Query 041463
Match_columns 356
No_of_seqs 201 out of 3082
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 12:13:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.8E-42 1.3E-46 333.9 27.9 346 2-355 342-752 (768)
2 3v47_A TOLL-like receptor 5B a 100.0 4.8E-37 1.7E-41 281.6 21.3 338 3-353 30-413 (455)
3 3rgz_A Protein brassinosteroid 100.0 1E-36 3.4E-41 295.9 22.5 328 2-340 199-549 (768)
4 2id5_A Lingo-1, leucine rich r 100.0 2.8E-36 9.5E-41 278.1 22.7 322 6-352 14-337 (477)
5 3vq2_A TLR4, TOLL-like recepto 100.0 3.8E-35 1.3E-39 278.4 24.5 195 149-353 348-563 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-34 7.3E-39 276.8 28.2 343 3-353 222-627 (680)
7 3t6q_A CD180 antigen; protein- 100.0 5.2E-35 1.8E-39 277.5 22.7 302 29-353 255-565 (606)
8 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.9E-35 3.4E-39 272.9 23.3 114 229-352 399-514 (562)
9 3o6n_A APL1; leucine-rich repe 100.0 3.7E-34 1.3E-38 257.1 21.8 311 2-351 44-355 (390)
10 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-34 5.3E-39 269.3 19.9 322 3-352 21-485 (520)
11 1ogq_A PGIP-2, polygalacturona 100.0 2.1E-34 7.3E-39 250.6 18.5 260 51-351 50-312 (313)
12 2z63_A TOLL-like receptor 4, v 100.0 6.4E-34 2.2E-38 268.1 22.5 119 228-353 416-536 (570)
13 2id5_A Lingo-1, leucine rich r 100.0 3.5E-34 1.2E-38 264.1 20.0 304 3-321 32-336 (477)
14 4eco_A Uncharacterized protein 100.0 6.6E-34 2.3E-38 270.3 19.2 327 1-341 204-599 (636)
15 4eco_A Uncharacterized protein 100.0 3.3E-34 1.1E-38 272.4 16.9 297 2-322 248-604 (636)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-33 4.7E-38 264.6 20.2 143 3-150 26-171 (549)
17 3t6q_A CD180 antigen; protein- 100.0 6E-33 2.1E-37 263.3 24.4 146 4-154 34-180 (606)
18 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-33 7.5E-38 275.2 21.2 246 105-353 268-565 (844)
19 3oja_B Anopheles plasmodium-re 100.0 3.4E-33 1.2E-37 263.9 21.6 301 2-334 50-351 (597)
20 4g8a_A TOLL-like receptor 4; l 100.0 3.8E-33 1.3E-37 266.0 22.0 338 4-353 53-585 (635)
21 3v47_A TOLL-like receptor 5B a 100.0 1.3E-33 4.5E-38 258.8 18.1 317 1-328 52-418 (455)
22 3vq2_A TLR4, TOLL-like recepto 100.0 3.2E-32 1.1E-36 258.3 23.5 157 178-334 351-527 (606)
23 4ecn_A Leucine-rich repeat pro 100.0 5.5E-32 1.9E-36 262.0 23.5 322 1-339 489-837 (876)
24 4ecn_A Leucine-rich repeat pro 100.0 4.9E-32 1.7E-36 262.4 22.4 303 19-334 440-812 (876)
25 1ziw_A TOLL-like receptor 3; i 100.0 6.5E-31 2.2E-35 252.6 26.5 327 4-346 249-626 (680)
26 4fmz_A Internalin; leucine ric 100.0 5.7E-31 1.9E-35 232.7 23.9 301 2-339 43-343 (347)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-31 6.9E-36 250.4 19.8 334 3-353 52-546 (562)
28 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-31 4.8E-36 232.8 15.2 250 28-318 50-304 (313)
29 1xku_A Decorin; proteoglycan, 100.0 4.6E-30 1.6E-34 225.2 24.9 267 4-319 32-307 (330)
30 2z63_A TOLL-like receptor 4, v 100.0 1E-30 3.6E-35 246.2 21.8 327 4-339 29-504 (570)
31 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-30 6.3E-35 227.9 21.8 282 29-334 34-326 (332)
32 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-30 1.1E-34 252.7 25.2 312 3-319 24-376 (844)
33 2z7x_B TOLL-like receptor 1, v 100.0 2.3E-30 7.8E-35 241.1 22.9 301 1-322 43-485 (520)
34 4fmz_A Internalin; leucine ric 100.0 4.8E-30 1.6E-34 226.7 22.1 282 2-318 65-346 (347)
35 1o6v_A Internalin A; bacterial 100.0 1.2E-29 4E-34 232.9 25.2 300 2-339 67-385 (466)
36 3o6n_A APL1; leucine-rich repe 100.0 4.8E-30 1.7E-34 230.3 20.6 286 2-320 68-354 (390)
37 1xku_A Decorin; proteoglycan, 100.0 5.1E-29 1.7E-33 218.6 24.1 268 3-316 52-330 (330)
38 3oja_B Anopheles plasmodium-re 100.0 1.5E-29 5E-34 239.1 20.9 310 2-346 74-384 (597)
39 1o6v_A Internalin A; bacterial 100.0 1E-28 3.5E-33 226.7 23.6 295 2-334 45-359 (466)
40 2ft3_A Biglycan; proteoglycan, 100.0 4.3E-29 1.5E-33 219.2 20.0 287 4-316 34-331 (332)
41 3zyj_A Leucine-rich repeat-con 100.0 6.8E-29 2.3E-33 226.2 21.9 252 52-352 44-296 (440)
42 3zyi_A Leucine-rich repeat-con 100.0 7.7E-29 2.6E-33 226.7 21.3 252 53-353 56-308 (452)
43 2z66_A Variable lymphocyte rec 100.0 1.1E-28 3.6E-33 214.3 17.9 275 30-346 9-291 (306)
44 2z81_A CD282 antigen, TOLL-lik 100.0 5.7E-29 2E-33 233.3 16.6 161 4-172 6-169 (549)
45 4g8a_A TOLL-like receptor 4; l 100.0 9.9E-28 3.4E-32 228.6 24.4 307 1-320 74-582 (635)
46 2z80_A TOLL-like receptor 2, v 100.0 2.5E-28 8.5E-33 216.2 17.7 275 8-324 36-320 (353)
47 2z80_A TOLL-like receptor 2, v 100.0 2.5E-28 8.5E-33 216.2 16.6 278 28-352 31-318 (353)
48 2z66_A Variable lymphocyte rec 100.0 8.6E-28 2.9E-32 208.5 19.1 278 6-324 10-293 (306)
49 3bz5_A Internalin-J, INLJ; leu 100.0 3.3E-27 1.1E-31 215.3 23.1 276 2-319 41-353 (457)
50 3zyi_A Leucine-rich repeat-con 100.0 6.9E-27 2.4E-31 213.7 23.7 250 29-319 55-304 (452)
51 3zyj_A Leucine-rich repeat-con 100.0 8.5E-27 2.9E-31 212.4 23.6 250 29-319 44-293 (440)
52 4fcg_A Uncharacterized protein 100.0 5.1E-27 1.8E-31 205.2 19.1 224 51-317 81-313 (328)
53 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-27 8E-32 203.6 16.0 225 31-319 14-239 (285)
54 1ozn_A Reticulon 4 receptor; N 99.9 5.8E-27 2E-31 201.2 15.5 151 6-164 14-166 (285)
55 4fcg_A Uncharacterized protein 99.9 3.5E-26 1.2E-30 199.9 20.1 225 28-294 81-314 (328)
56 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-25 4.2E-30 205.0 23.7 281 2-324 63-393 (457)
57 3o53_A Protein LRIM1, AGAP0063 99.9 9.8E-28 3.4E-32 209.0 7.2 269 5-325 12-283 (317)
58 1jl5_A Outer protein YOPM; leu 99.9 1.1E-24 3.8E-29 198.4 23.5 277 3-319 111-410 (454)
59 1z7x_W Ribonuclease inhibitor; 99.9 1.2E-28 4.2E-33 226.1 -6.5 311 2-319 27-412 (461)
60 1wwl_A Monocyte differentiatio 99.9 1.2E-26 4E-31 201.8 6.0 250 28-319 43-310 (312)
61 2z62_A TOLL-like receptor 4, v 99.9 1.5E-24 5E-29 185.3 18.9 215 80-329 29-248 (276)
62 1p9a_G Platelet glycoprotein I 99.9 1.2E-24 4E-29 186.8 18.1 204 74-318 5-208 (290)
63 3g06_A SSPH2 (leucine-rich rep 99.9 5.7E-24 2E-28 199.7 24.2 263 4-324 41-303 (622)
64 1jl5_A Outer protein YOPM; leu 99.9 1.5E-23 5.1E-28 191.0 26.1 280 3-327 91-382 (454)
65 1z7x_W Ribonuclease inhibitor; 99.9 4.6E-29 1.6E-33 228.9 -10.6 315 2-319 2-355 (461)
66 2o6q_A Variable lymphocyte rec 99.9 3.7E-24 1.3E-28 182.1 20.3 207 79-322 16-222 (270)
67 3oja_A Leucine-rich immune mol 99.9 6.5E-26 2.2E-30 208.5 9.7 147 29-190 35-182 (487)
68 1wwl_A Monocyte differentiatio 99.9 4.7E-27 1.6E-31 204.2 1.8 240 50-334 42-302 (312)
69 3o53_A Protein LRIM1, AGAP0063 99.9 3.6E-25 1.2E-29 192.8 10.6 254 30-334 12-268 (317)
70 2z62_A TOLL-like receptor 4, v 99.9 5.1E-24 1.8E-28 181.9 16.9 209 103-353 28-242 (276)
71 3oja_A Leucine-rich immune mol 99.9 8.9E-25 3.1E-29 200.9 13.0 253 50-353 33-287 (487)
72 2o6q_A Variable lymphocyte rec 99.9 8E-23 2.7E-27 173.8 21.2 204 51-295 16-219 (270)
73 1p9a_G Platelet glycoprotein I 99.9 3.8E-22 1.3E-26 171.1 19.3 201 49-294 8-208 (290)
74 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-21 5.5E-26 183.1 24.6 256 28-340 40-295 (622)
75 3rfs_A Internalin B, repeat mo 99.9 3.4E-22 1.2E-26 170.1 16.2 222 29-324 20-241 (272)
76 3goz_A Leucine-rich repeat-con 99.9 1.6E-24 5.5E-29 192.2 0.8 159 7-166 2-182 (362)
77 3rfs_A Internalin B, repeat mo 99.9 1.3E-22 4.6E-27 172.6 12.5 226 6-306 22-247 (272)
78 2ca6_A RAN GTPase-activating p 99.9 8E-25 2.7E-29 196.0 -4.1 93 230-322 213-320 (386)
79 2ast_B S-phase kinase-associat 99.9 2.5E-23 8.6E-28 182.8 5.3 253 30-326 49-314 (336)
80 2ast_B S-phase kinase-associat 99.9 1E-23 3.5E-28 185.3 2.4 151 5-161 49-205 (336)
81 2xwt_C Thyrotropin receptor; s 99.9 2.3E-21 7.9E-26 161.8 16.5 85 80-164 32-118 (239)
82 2xwt_C Thyrotropin receptor; s 99.9 1.5E-21 5E-26 163.0 14.8 196 103-334 31-232 (239)
83 4glp_A Monocyte differentiatio 99.9 9E-23 3.1E-27 177.1 7.1 97 234-334 198-300 (310)
84 4ay9_X Follicle-stimulating ho 99.9 3.8E-21 1.3E-25 169.7 16.2 96 235-334 156-252 (350)
85 3ogk_B Coronatine-insensitive 99.9 1.1E-23 3.7E-28 199.2 -0.9 327 2-333 163-543 (592)
86 3m19_A Variable lymphocyte rec 99.9 7.9E-21 2.7E-25 159.7 16.4 184 80-324 15-198 (251)
87 2ca6_A RAN GTPase-activating p 99.9 7E-24 2.4E-28 189.9 -3.0 265 18-314 23-339 (386)
88 3goz_A Leucine-rich repeat-con 99.9 5.5E-23 1.9E-27 182.3 2.6 261 32-320 2-299 (362)
89 3ogk_B Coronatine-insensitive 99.9 1.1E-24 3.6E-29 206.1 -10.1 134 2-136 111-252 (592)
90 1h6u_A Internalin H; cell adhe 99.9 9E-21 3.1E-25 164.1 15.4 126 49-190 39-164 (308)
91 4glp_A Monocyte differentiatio 99.9 1.3E-21 4.6E-26 169.7 10.1 235 49-319 62-308 (310)
92 3m19_A Variable lymphocyte rec 99.9 2.1E-20 7.2E-25 157.1 17.0 115 231-352 81-197 (251)
93 1h6u_A Internalin H; cell adhe 99.8 4.7E-20 1.6E-24 159.7 15.6 124 28-164 41-164 (308)
94 2p1m_B Transport inhibitor res 99.8 3E-23 1E-27 196.3 -6.1 112 2-113 104-221 (594)
95 4ay9_X Follicle-stimulating ho 99.8 5.1E-19 1.8E-23 156.0 19.9 240 6-291 12-256 (350)
96 2p1m_B Transport inhibitor res 99.8 2.9E-22 1E-26 189.5 -3.7 310 2-319 129-520 (594)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 2.4E-19 8.3E-24 147.3 12.7 157 129-321 13-169 (220)
98 2v9t_B SLIT homolog 2 protein 99.8 2.8E-19 9.6E-24 146.9 13.1 111 235-352 58-169 (220)
99 2o6s_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 142.4 13.6 180 6-202 10-190 (208)
100 2xot_A Amphoterin-induced prot 99.8 1.8E-19 6.2E-24 159.5 9.6 115 233-352 88-206 (361)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-18 3.6E-23 143.5 12.0 152 106-294 14-166 (220)
102 3e6j_A Variable lymphocyte rec 99.8 3.6E-18 1.2E-22 141.3 13.9 157 128-322 20-176 (229)
103 2o6s_A Variable lymphocyte rec 99.8 5.8E-18 2E-22 138.0 13.8 87 231-324 98-184 (208)
104 1h6t_A Internalin B; cell adhe 99.8 7.9E-18 2.7E-22 144.4 12.9 84 75-164 42-125 (291)
105 3cvr_A Invasion plasmid antige 99.8 1.7E-17 5.9E-22 154.0 16.0 94 52-164 60-153 (571)
106 4ezg_A Putative uncharacterize 99.7 9.7E-18 3.3E-22 135.4 12.0 153 24-190 41-194 (197)
107 2v9t_B SLIT homolog 2 protein 99.7 3E-17 1E-21 134.8 14.4 153 106-319 14-166 (220)
108 3cvr_A Invasion plasmid antige 99.7 1.6E-17 5.4E-22 154.2 14.0 114 29-164 60-173 (571)
109 1m9s_A Internalin B; cell inva 99.7 8.2E-18 2.8E-22 157.8 12.1 84 75-164 39-122 (605)
110 1h6t_A Internalin B; cell adhe 99.7 1.5E-17 5.3E-22 142.5 12.6 122 30-164 26-147 (291)
111 2xot_A Amphoterin-induced prot 99.7 2E-17 6.7E-22 146.4 12.9 176 6-190 21-202 (361)
112 3sb4_A Hypothetical leucine ri 99.7 2.8E-17 9.5E-22 143.7 11.9 102 231-334 224-327 (329)
113 4ezg_A Putative uncharacterize 99.7 8.6E-17 3E-21 129.8 13.5 85 231-319 110-195 (197)
114 1m9s_A Internalin B; cell inva 99.7 9.5E-17 3.2E-21 150.6 14.7 145 29-190 22-166 (605)
115 3e6j_A Variable lymphocyte rec 99.7 1.7E-16 6E-21 131.1 14.7 154 105-296 21-174 (229)
116 1dce_A Protein (RAB geranylger 99.7 1.7E-19 5.7E-24 168.2 -7.6 101 230-333 460-565 (567)
117 2wfh_A SLIT homolog 2 protein 99.7 2.4E-16 8.3E-21 126.5 11.9 110 235-352 33-143 (193)
118 1xeu_A Internalin C; cellular 99.7 8.5E-17 2.9E-21 135.8 8.7 170 78-296 18-187 (263)
119 1w8a_A SLIT protein; signaling 99.7 1.8E-16 6.2E-21 127.2 8.9 133 154-322 11-143 (192)
120 1xeu_A Internalin C; cellular 99.6 1.9E-15 6.4E-20 127.5 13.1 169 3-192 19-187 (263)
121 1w8a_A SLIT protein; signaling 99.6 2E-15 6.7E-20 121.2 12.6 134 30-168 10-143 (192)
122 3sb4_A Hypothetical leucine ri 99.6 1.7E-16 5.9E-21 138.6 6.8 265 50-341 24-310 (329)
123 1dce_A Protein (RAB geranylger 99.6 1.6E-18 5.4E-23 161.6 -6.9 196 76-312 346-567 (567)
124 2ell_A Acidic leucine-rich nuc 99.6 1.4E-15 4.8E-20 119.4 10.0 131 28-164 24-160 (168)
125 4b8c_D Glucose-repressible alc 99.6 3E-16 1E-20 150.7 5.7 186 3-200 173-364 (727)
126 4b8c_D Glucose-repressible alc 99.6 8.2E-16 2.8E-20 147.7 6.5 90 96-190 217-306 (727)
127 2ell_A Acidic leucine-rich nuc 99.6 1.7E-14 5.8E-19 113.1 12.7 91 231-321 69-163 (168)
128 2o6r_A Variable lymphocyte rec 99.6 5.3E-15 1.8E-19 117.1 9.7 138 153-327 9-146 (177)
129 2wfh_A SLIT homolog 2 protein 99.6 2.3E-14 8E-19 114.9 13.3 128 31-165 13-140 (193)
130 2je0_A Acidic leucine-rich nuc 99.6 5.2E-15 1.8E-19 113.6 8.6 126 28-159 17-148 (149)
131 2je0_A Acidic leucine-rich nuc 99.6 2.7E-15 9.3E-20 115.2 6.8 129 2-136 16-149 (149)
132 3g39_A Variable lymphocyte rec 99.6 1.6E-14 5.3E-19 113.5 9.5 108 235-352 11-119 (170)
133 4fdw_A Leucine rich hypothetic 99.5 8.2E-13 2.8E-17 117.9 21.6 242 28-319 113-359 (401)
134 2o6r_A Variable lymphocyte rec 99.5 1.3E-13 4.3E-18 109.1 13.1 132 30-167 9-140 (177)
135 2r9u_A Variable lymphocyte rec 99.5 3.5E-14 1.2E-18 111.8 9.5 107 236-352 15-122 (174)
136 4fdw_A Leucine rich hypothetic 99.5 3.1E-12 1E-16 114.2 21.2 269 4-318 114-383 (401)
137 1a9n_A U2A', U2A'; complex (nu 99.5 9.9E-14 3.4E-18 109.6 9.1 135 147-320 15-155 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 5.3E-14 1.8E-18 111.2 7.5 128 28-164 19-153 (176)
139 1ds9_A Outer arm dynein; leuci 99.5 1.6E-15 5.4E-20 122.4 -3.6 128 4-140 19-153 (198)
140 3g39_A Variable lymphocyte rec 99.4 3.9E-13 1.3E-17 105.4 8.8 94 234-327 31-124 (170)
141 2r9u_A Variable lymphocyte rec 99.4 8.7E-13 3E-17 103.8 8.9 95 234-328 34-128 (174)
142 4fs7_A Uncharacterized protein 99.4 2.9E-11 9.9E-16 108.1 18.7 84 228-314 292-375 (394)
143 3un9_A NLR family member X1; l 99.4 1E-14 3.5E-19 129.0 -5.2 163 3-165 72-253 (372)
144 2ifg_A High affinity nerve gro 99.3 2.1E-12 7.3E-17 113.5 8.1 106 238-352 13-120 (347)
145 1ds9_A Outer arm dynein; leuci 99.3 3.9E-14 1.3E-18 114.2 -2.8 82 233-318 93-185 (198)
146 3un9_A NLR family member X1; l 99.3 1.9E-13 6.4E-18 120.9 -2.8 167 102-296 71-254 (372)
147 4fs7_A Uncharacterized protein 99.1 2.9E-09 1E-13 95.0 16.6 295 1-310 69-393 (394)
148 2ifg_A High affinity nerve gro 99.1 3.3E-10 1.1E-14 99.4 10.2 103 55-164 12-116 (347)
149 4gt6_A Cell surface protein; l 99.0 3.2E-08 1.1E-12 88.3 20.7 103 227-334 282-384 (394)
150 2ra8_A Uncharacterized protein 99.0 3.1E-10 1E-14 99.5 5.3 165 123-316 168-341 (362)
151 4gt6_A Cell surface protein; l 98.9 8.8E-08 3E-12 85.5 19.1 286 4-317 65-390 (394)
152 2ra8_A Uncharacterized protein 98.8 1.9E-09 6.5E-14 94.5 2.8 134 49-190 170-320 (362)
153 4h09_A Hypothetical leucine ri 98.8 1.2E-06 4.1E-11 77.6 20.7 286 3-315 46-343 (379)
154 4h09_A Hypothetical leucine ri 98.6 2.1E-05 7.3E-10 69.5 24.5 296 22-344 41-348 (379)
155 3e4g_A ATP synthase subunit S, 98.6 4.9E-09 1.7E-13 81.1 0.3 84 233-316 61-150 (176)
156 1io0_A Tropomodulin; LRR prote 98.6 3.6E-09 1.2E-13 83.8 -2.0 113 28-140 36-164 (185)
157 1io0_A Tropomodulin; LRR prote 98.5 1.2E-08 4.1E-13 80.8 -0.3 114 50-163 35-163 (185)
158 3rw6_A Nuclear RNA export fact 98.4 4.6E-08 1.6E-12 81.5 1.5 79 254-334 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.4 1.3E-07 4.4E-12 73.1 3.6 84 79-162 61-150 (176)
160 3rw6_A Nuclear RNA export fact 98.3 6.9E-07 2.4E-11 74.3 4.9 81 230-312 167-258 (267)
161 3rfe_A Platelet glycoprotein I 98.0 8.1E-06 2.8E-10 60.1 4.9 56 261-318 12-68 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 5.7E-06 1.9E-10 65.2 -0.3 112 28-139 41-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 6.5E-05 2.2E-09 59.1 -0.3 87 50-136 40-135 (197)
164 3rfe_A Platelet glycoprotein I 97.0 0.0016 5.6E-08 47.6 6.5 57 236-294 11-68 (130)
165 2lz0_A Uncharacterized protein 75.9 4.4 0.00015 27.5 4.6 40 273-313 12-51 (100)
166 2lz0_A Uncharacterized protein 68.5 15 0.00052 24.8 6.0 48 243-291 6-53 (100)
167 2hgo_A CASSIICOLIN; toxin, dis 33.3 6.5 0.00022 18.4 -0.5 8 342-349 17-24 (27)
168 1w9n_A Epilancin 15X; antibiot 31.1 31 0.0011 16.9 1.7 16 341-356 14-30 (31)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-42 Score=333.94 Aligned_cols=346 Identities=37% Similarity=0.580 Sum_probs=263.5
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-C--CCCCcEEecCCCcccCcCCCCCCcccCCc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-G--FNFPATVDLSSNNFEGRLPLCIPKSIGNL 78 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 78 (356)
+++|++|++++|.+++.+|..+..+.++|++|++++|.+.+..+..+ . +++|++|++++|.+++. +|..+..+
T Consensus 342 l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l 417 (768)
T 3rgz_A 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK----IPPTLSNC 417 (768)
T ss_dssp CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE----CCGGGGGC
T ss_pred CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc----cCHHHhcC
Confidence 45667777777776666666666652267777777666665444444 2 56677777777776653 34566777
Q ss_pred ccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEe
Q 041463 79 KQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDL 158 (356)
Q Consensus 79 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 158 (356)
++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+.|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 78888888888777777777777777888888877777677777777777777777777777777777777777777777
Q ss_pred cCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeee-------------------
Q 041463 159 GDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRV------------------- 219 (356)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~------------------- 219 (356)
++|.+.+..|.++.. ++. |+.|++++|.+.+.+|..+..+++|+.+........+.++.
T Consensus 498 ~~N~l~~~~p~~~~~-l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGR-LEN-LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp CSSCCCSCCCGGGGG-CTT-CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred cCCccCCcCChHHhc-CCC-CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 777777667766654 333 77777777777777777777777766644433222211110
Q ss_pred -------------------------------------------eecCCccccccccccccEEeecCCcccccCchhhhcc
Q 041463 220 -------------------------------------------VTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSL 256 (356)
Q Consensus 220 -------------------------------------------~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~ 256 (356)
...+..+..+..+++|+.|++++|.+.+..|..+..+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 0011122345667899999999999999999999999
Q ss_pred cccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCcccc
Q 041463 257 VHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIY 336 (356)
Q Consensus 257 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~ 336 (356)
+.|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..++.++.|++|++++|+++|.+|....++.+.... |
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~-~ 734 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK-F 734 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG-G
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHH-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888887 8
Q ss_pred ccCccccCCCCCCCCCCCC
Q 041463 337 EGNLALCGDPLPKKCPENG 355 (356)
Q Consensus 337 ~~~~~~~~~~~~~~c~~~~ 355 (356)
.+|+.+||.|.. .|+..+
T Consensus 735 ~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 735 LNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp CSCTEEESTTSC-CCCSCC
T ss_pred cCCchhcCCCCc-CCCCCc
Confidence 999999999988 888764
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.8e-37 Score=281.56 Aligned_cols=338 Identities=21% Similarity=0.223 Sum_probs=236.8
Q ss_pred ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcC-CCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRV-PNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ 80 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 80 (356)
++|++|++++|.+++..|..+..+ ++|++|++++|.+.+.+ +..+ ++++|++|++++|.+.+. .|..+..+++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL----ETGAFNGLAN 104 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE----CTTTTTTCTT
T ss_pred CccCEEEecCCccCcCChhHhccC-ccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc----ChhhccCccc
Confidence 468889999988887777777777 78999999888876443 4444 588899999998888753 3467788888
Q ss_pred ccEEeccccccccccccc--ccCCCCCcEEEcccCccccccccc-ccCCCCCcEEEeeccccccccCccccCC--CCCcE
Q 041463 81 LITLVISNNNLSGEIPLL--FSNSSFLYILDMSNNSLSGSIPES-IGSLRTLRFLVLRNNYLSGELPLSLKNC--TFMES 155 (356)
Q Consensus 81 L~~L~l~~~~i~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~l~~l--~~L~~ 155 (356)
|++|++++|.+.+..+.. +..+++|++|++++|.+....|.. +..+++|++|++++|.+++..+..+..+ .+|+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 999999988887644443 788888999999988888666655 7788889999998888876666666554 45566
Q ss_pred EEecCCcccccCCchhh-------cccccceeEEEcccCcccccCCCCcCCC---CCCcccCCC----------------
Q 041463 156 LDLGDNNLSGNIPAWIG-------ASMPGLLHILDLSHNDLSGFIPPRVGNL---SDMKVEPPK---------------- 209 (356)
Q Consensus 156 L~l~~~~l~~~~~~~~~-------~~~~~~L~~L~l~~~~l~~~~~~~~~~l---~~L~~~~~~---------------- 209 (356)
|++++|.+.+..+..+. ...+ .++.|++++|.+.+..+..+... .+++.+...
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNT-SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTC-EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred cccccCcccccchhhccccccccccccc-eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 66666655432222111 0011 26666666665543222211110 111100000
Q ss_pred -------CC--ccCCCeeeee---cCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCc
Q 041463 210 -------SV--QHEGRLRVVT---KGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEI 277 (356)
Q Consensus 210 -------~~--~~~~~~~~~~---~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 277 (356)
.. .....+.... ....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 00 0111111111 11234557788999999999999998888889899999999999999987778888
Q ss_pred CCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCccccccCccccCCCCCCCCCC
Q 041463 278 GNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCPE 353 (356)
Q Consensus 278 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~~ 353 (356)
..+++|++|++++|++++..|..|..+++|++|++++|++++.++.. ..++.|+.++ +.+|||.|+|+.
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-------l~~N~l~~~~~~ 413 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW-------LHTNPWDCSCPR 413 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE-------CCSSCBCCCTTT
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEE-------ccCCCcccCCCc
Confidence 99999999999999999878888999999999999999999877765 6677777655 456788888873
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-36 Score=295.92 Aligned_cols=328 Identities=32% Similarity=0.422 Sum_probs=194.5
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCC-----------
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPL----------- 69 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~----------- 69 (356)
+++|++|++++|.+++..|. +..+ ++|++|++++|.+++..+..+ .+++|++|++++|.+.+.+|.
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L 276 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL 276 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTC-CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEEC
T ss_pred CCcCCEEECcCCcCCCCCcc-cccC-CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEEC
Confidence 45566666666665554444 4444 555555555555554444333 355555555555555433221
Q ss_pred -------CCCcccCC-cccccEEecccccccccccccccCCCCCcEEEcccCccccccccc-ccCCCCCcEEEeeccccc
Q 041463 70 -------CIPKSIGN-LKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPES-IGSLRTLRFLVLRNNYLS 140 (356)
Q Consensus 70 -------~~~~~~~~-l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~ 140 (356)
.+|..+.. +++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|.. +..+++|++|++++|.++
T Consensus 277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 11223322 255555555555555555555555555555555555554333332 555555555555555555
Q ss_pred cccCccccCCC-CCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeee
Q 041463 141 GELPLSLKNCT-FMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRV 219 (356)
Q Consensus 141 ~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~ 219 (356)
+..|..+..++ +|+.|++++|.+.+..+..+.......++.|++++|.+.+.+|..+..+++|+.+.......
T Consensus 357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l------ 430 (768)
T 3rgz_A 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL------ 430 (768)
T ss_dssp ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE------
T ss_pred ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc------
Confidence 55555555544 55555555555554444443332122366666666666656666666666665543333221
Q ss_pred eecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCc
Q 041463 220 VTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPP 299 (356)
Q Consensus 220 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~ 299 (356)
.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|.
T Consensus 431 --~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 431 --SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp --ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred --cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence 123345566777788888888877777777777777888888888887777777777778888888888888777777
Q ss_pred cccCcCCCCEEEcccCcccccCCCC-cccCcCCCccccccCc
Q 041463 300 SMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYEGNL 340 (356)
Q Consensus 300 ~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~ 340 (356)
.++.+++|++|++++|++++.+|.. ..++.|+.++ +.+|.
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~-Ls~N~ 549 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD-LNTNL 549 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE-CCSSE
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE-CCCCc
Confidence 7777788888888888887776654 6677777776 44443
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=278.09 Aligned_cols=322 Identities=22% Similarity=0.215 Sum_probs=241.8
Q ss_pred eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEE
Q 041463 6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITL 84 (356)
Q Consensus 6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 84 (356)
+.++.+++.++ .+|..+. +++++|++++|.+++..+..+ ++++|++|++++|.+.+. .|..|..+++|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L 85 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV----EPGAFNNLFNLRTL 85 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEE
T ss_pred CEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe----ChhhhhCCccCCEE
Confidence 45666777776 4555443 578888888888887666655 588888888888877642 24667788888888
Q ss_pred ecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463 85 VISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS 164 (356)
Q Consensus 85 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 164 (356)
++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 86 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp ECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred ECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 88888887555566778888888888888888777777888888888888888887666777888888888888888877
Q ss_pred ccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCc
Q 041463 165 GNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTN 244 (356)
Q Consensus 165 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 244 (356)
..+......++. |+.|++++|.+.+..+..+..+++|+.+........... +.......+|+.|++++|.
T Consensus 166 -~~~~~~l~~l~~-L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 166 -SIPTEALSHLHG-LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM--------TPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp -SCCHHHHTTCTT-CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE--------CTTTTTTCCCSEEEEESSC
T ss_pred -ccChhHhcccCC-CcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc--------CcccccCccccEEECcCCc
Confidence 444433333443 888888888877666667777777766443332221111 1112223489999999999
Q ss_pred ccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC
Q 041463 245 LSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT 324 (356)
Q Consensus 245 l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 324 (356)
+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..+..|.++++|++|++++|++++..+..
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence 98666678889999999999999998777778899999999999999999888889999999999999999999877655
Q ss_pred -cccCcCCCccccccCccccCCCCCCCCC
Q 041463 325 -NQFQTLNDPSIYEGNLALCGDPLPKKCP 352 (356)
Q Consensus 325 -~~l~~l~~~~~~~~~~~~~~~~~~~~c~ 352 (356)
..++.|+.++ +.+|||.|||.
T Consensus 316 ~~~l~~L~~L~-------l~~N~l~c~c~ 337 (477)
T 2id5_A 316 FHSVGNLETLI-------LDSNPLACDCR 337 (477)
T ss_dssp BSCGGGCCEEE-------CCSSCEECSGG
T ss_pred cCCCcccCEEE-------ccCCCccCccc
Confidence 5666676554 45688888886
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.8e-35 Score=278.39 Aligned_cols=195 Identities=19% Similarity=0.157 Sum_probs=125.8
Q ss_pred CCCCCcEEEecCCccccc--CCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCC-----------
Q 041463 149 NCTFMESLDLGDNNLSGN--IPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG----------- 215 (356)
Q Consensus 149 ~l~~L~~L~l~~~~l~~~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~----------- 215 (356)
.+++|+.|++++|.+.+. .+..+.. ++. ++.|++++|.+.+ ++..+..+++|+.+.........
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~-L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLG-TNS-LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHC-CSC-CCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred cCCCCCEEECcCCccCCCcchhhhhcc-CCc-ccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 456777777777776533 2444332 333 8888888887763 44666667766664433221111
Q ss_pred Ceeeee------cCCccccccccccccEEeecCCcccc-cCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEc
Q 041463 216 RLRVVT------KGSERKYFTTLYLVNLLDLSSTNLSA-EIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDL 288 (356)
Q Consensus 216 ~~~~~~------~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L 288 (356)
.+.... ....+..+..+++|+.|++++|.+.+ ..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 111110 11123345667777777777777765 35666777777888888888777666777777788888888
Q ss_pred cCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccC-cCCCccccccCccccCCCCCCCCCC
Q 041463 289 SKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQ-TLNDPSIYEGNLALCGDPLPKKCPE 353 (356)
Q Consensus 289 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~c~~ 353 (356)
++|++++..|..+.++++|++|++++|+++..++.+..++ .|+.++ +.||||.|+|+.
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~-------l~~N~~~c~c~~ 563 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN-------LTNNSVACICEH 563 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEE-------CCSCCCCCSSTT
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEE-------ccCCCcccCCcc
Confidence 8888876667777778888888888888776555555554 355443 567899999974
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-34 Score=276.79 Aligned_cols=343 Identities=23% Similarity=0.236 Sum_probs=184.7
Q ss_pred ccceEEEcccccccccCCchHHhhc-cCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCC-----------
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLS-LTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPL----------- 69 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~----------- 69 (356)
++|++|++++|.+++..+..+..+. ++|++|++++|.+++..+..+ .+++|++|++++|.+.+..+.
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 5566677777666665555555541 236666666666665555544 466666666666665543221
Q ss_pred --------------CCC----cccCCcccccEEecccccccccccccccCCCCCcEEEcccCccc--ccccccccC--CC
Q 041463 70 --------------CIP----KSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLS--GSIPESIGS--LR 127 (356)
Q Consensus 70 --------------~~~----~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~--l~ 127 (356)
.+| ..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+. ......+.. .+
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 011 13445566666666666666555555666666666666665432 111112221 23
Q ss_pred CCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccC
Q 041463 128 TLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEP 207 (356)
Q Consensus 128 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~ 207 (356)
+|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+......++. ++.|++++|.+.+..+..+..+++|+.+.
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN-IFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTT-CCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccc-ccEEecCCCCcceeChhhhhcCcccccch
Confidence 56666666666665566667777778888888777765555443343443 77777777777666666666666665543
Q ss_pred CCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCC--------cCcCC
Q 041463 208 PKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIP--------EEIGN 279 (356)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~--------~~~~~ 279 (356)
....... ..+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+ ..+..
T Consensus 461 l~~n~l~------~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~ 534 (680)
T 1ziw_A 461 LRRVALK------NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534 (680)
T ss_dssp CTTSCCB------CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred hcccccc------ccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcC
Confidence 3322110 011123334455555555555555554444445555555555555555442111 12344
Q ss_pred CCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCcccccc-------------------C
Q 041463 280 FEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYEG-------------------N 339 (356)
Q Consensus 280 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~-------------------~ 339 (356)
+++|++|++++|++++..+..|.++++|++|++++|++++.++.. ..++.|+.++ +.+ .
T Consensus 535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~-L~~N~l~~~~~~~~~~~~~~L~~ 613 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN-LQKNLITSVEKKVFGPAFRNLTE 613 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CTTSCCCBCCHHHHHHHHTTCSE
T ss_pred CCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEE-CCCCcCCccChhHhcccccccCE
Confidence 455555555555555333334455555555555555555444433 3444444433 111 1
Q ss_pred ccccCCCCCCCCCC
Q 041463 340 LALCGDPLPKKCPE 353 (356)
Q Consensus 340 ~~~~~~~~~~~c~~ 353 (356)
+.+.||||.|+|+.
T Consensus 614 l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 614 LDMRFNPFDCTCES 627 (680)
T ss_dssp EECTTCCCCBCCCC
T ss_pred EEccCCCcccCCcc
Confidence 23578999999984
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.2e-35 Score=277.49 Aligned_cols=302 Identities=22% Similarity=0.255 Sum_probs=193.3
Q ss_pred CCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463 29 TLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107 (356)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 107 (356)
+|++|++++|.+++..+..+ .+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-----ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-----CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-----CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 45566666666555444444 3556666666666554 23344555566666666666655444555556666666
Q ss_pred EEcccCcccccc-cccccCCCCCcEEEeecccccccc--CccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEc
Q 041463 108 LDMSNNSLSGSI-PESIGSLRTLRFLVLRNNYLSGEL--PLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDL 184 (356)
Q Consensus 108 L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~--~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l 184 (356)
|++++|.+.... +..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+..+..+.. ++. ++.|++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~-L~~L~l 407 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE-CPQ-LELLDL 407 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT-CTT-CSEEEC
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC-Ccc-CCeEEC
Confidence 666666554222 233555566666666666555333 445555566666666666555333333322 222 566666
Q ss_pred ccCcccccCCC-CcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCccccc---CchhhhcccccC
Q 041463 185 SHNDLSGFIPP-RVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAE---IPAELTSLVHLG 260 (356)
Q Consensus 185 ~~~~l~~~~~~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~L~ 260 (356)
++|.+.+..+. .+..+++|+.+....... ....+..+..+++|+.|++++|.+.+. .+..+..+++|+
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLL--------DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCC--------BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCcc--------CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 66655543332 245555554433332211 111233456677888899999998762 235688899999
Q ss_pred eEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCccccccC
Q 041463 261 TLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYEGN 339 (356)
Q Consensus 261 ~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~ 339 (356)
+|++++|.+++..|..+..+++|++|++++|++++..|..+.+++.| .|++++|++++.+|.. ..++.|+.++
T Consensus 480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~----- 553 (606)
T 3t6q_A 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN----- 553 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE-----
T ss_pred EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe-----
Confidence 99999999997778899999999999999999998889999999999 9999999999888875 6677776554
Q ss_pred ccccCCCCCCCCCC
Q 041463 340 LALCGDPLPKKCPE 353 (356)
Q Consensus 340 ~~~~~~~~~~~c~~ 353 (356)
+.||||.|+|+.
T Consensus 554 --l~~N~~~c~c~~ 565 (606)
T 3t6q_A 554 --LRQNPLDCTCSN 565 (606)
T ss_dssp --CTTCCEECSGGG
T ss_pred --CCCCCccccCCc
Confidence 567899999973
No 8
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.9e-35 Score=272.89 Aligned_cols=114 Identities=25% Similarity=0.327 Sum_probs=74.1
Q ss_pred ccccccccEEeecCCcccc-cCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCC
Q 041463 229 FTTLYLVNLLDLSSTNLSA-EIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFM 307 (356)
Q Consensus 229 ~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 307 (356)
+..+++|+.|++++|.+.+ .....+..+++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|
T Consensus 399 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L 475 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL 475 (562)
T ss_dssp TTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC
T ss_pred hcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC
Confidence 4455555556666655554 2222344555566666666655544333332 57888888888887 566555688899
Q ss_pred CEEEcccCcccccCCC-CcccCcCCCccccccCccccCCCCCCCCC
Q 041463 308 NHLNLSYNNLSGEIPN-TNQFQTLNDPSIYEGNLALCGDPLPKKCP 352 (356)
Q Consensus 308 ~~L~l~~n~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~c~ 352 (356)
++|++++|++++.++. +..++.|+.++ +.||||.|+|+
T Consensus 476 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~-------l~~N~~~c~c~ 514 (562)
T 3a79_B 476 QELNVASNQLKSVPDGVFDRLTSLQYIW-------LHDNPWDCTCP 514 (562)
T ss_dssp SEEECCSSCCCCCCTTSTTTCTTCCCEE-------CCSCCBCCCHH
T ss_pred CEEECCCCCCCCCCHHHHhcCCCCCEEE-------ecCCCcCCCcc
Confidence 9999999999866665 56677666554 45689999985
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.7e-34 Score=257.11 Aligned_cols=311 Identities=18% Similarity=0.166 Sum_probs=245.9
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ 80 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 80 (356)
++++++|+++++.++...+..+..+ ++|++|++++|.+++..+..+ .+++|++|++++|.+.+. .+..+..+++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL----PPHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTT
T ss_pred cCCceEEEecCCchhhCChhHhccc-ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC----CHHHhcCCCC
Confidence 5789999999999985444444555 999999999999997777666 699999999999998753 2466888999
Q ss_pred ccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecC
Q 041463 81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGD 160 (356)
Q Consensus 81 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 160 (356)
|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.++.. .+..+++|+.+++++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY 195 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCS
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccc
Confidence 99999999999855555678999999999999999977788899999999999999999843 356788999999999
Q ss_pred CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463 161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL 240 (356)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 240 (356)
|.+.+.. .+..++.|++++|.+........ ++|+.+........ ....+..+++|+.|++
T Consensus 196 n~l~~~~-------~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~----------~~~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 196 NLLSTLA-------IPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLT----------DTAWLLNYPGLVEVDL 255 (390)
T ss_dssp SCCSEEE-------CCSSCSEEECCSSCCCEEECCCC---SSCCEEECCSSCCC----------CCGGGGGCTTCSEEEC
T ss_pred ccccccC-------CCCcceEEECCCCeeeecccccc---ccccEEECCCCCCc----------ccHHHcCCCCccEEEC
Confidence 9876321 22348999999998875433222 34444333332211 1245778899999999
Q ss_pred cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccccc
Q 041463 241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGE 320 (356)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 320 (356)
++|.+.+..+..+..+++|++|++++|.++ .++..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++..
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 256 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred CCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee
Confidence 999999888888999999999999999998 46667788999999999999998 5676788899999999999999876
Q ss_pred CCCCcccCcCCCccccccCccccCCCCCCCC
Q 041463 321 IPNTNQFQTLNDPSIYEGNLALCGDPLPKKC 351 (356)
Q Consensus 321 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~c 351 (356)
. ...++.|+.++ + .||||.|+|
T Consensus 334 ~--~~~~~~L~~L~-l------~~N~~~~~~ 355 (390)
T 3o6n_A 334 K--LSTHHTLKNLT-L------SHNDWDCNS 355 (390)
T ss_dssp C--CCTTCCCSEEE-C------CSSCEEHHH
T ss_pred C--chhhccCCEEE-c------CCCCccchh
Confidence 3 56677777666 3 345555544
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=269.31 Aligned_cols=322 Identities=22% Similarity=0.208 Sum_probs=182.9
Q ss_pred ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL 81 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 81 (356)
++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ++++|++|++++|.++ .+ |.. .+++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l----p~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSL-SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KI----SCH--PTVNL 92 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTC-TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EE----ECC--CCCCC
T ss_pred ccccEEECCCCcccccChhhcccc-ccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ec----Ccc--ccCCc
Confidence 356777777777765555556655 677777777777766555554 4677777777777665 22 222 56677
Q ss_pred cEEecccccccc-cccccccCCCCCcEEEcccCcccccccccccCCCCC--cEEEeecccc--ccccCccccCC------
Q 041463 82 ITLVISNNNLSG-EIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTL--RFLVLRNNYL--SGELPLSLKNC------ 150 (356)
Q Consensus 82 ~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~l--~~~~~~~l~~l------ 150 (356)
++|++++|.+.+ ..|..|..+++|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|..+..+
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~ 169 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEE
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEE
Confidence 777777776664 245666667777777776666553 123333334 5555555444 22222222211
Q ss_pred -----------------------------------------------------------------------------CCC
Q 041463 151 -----------------------------------------------------------------------------TFM 153 (356)
Q Consensus 151 -----------------------------------------------------------------------------~~L 153 (356)
++|
T Consensus 170 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L 249 (520)
T 2z7x_B 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249 (520)
T ss_dssp EECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSC
T ss_pred EEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcc
Confidence 123
Q ss_pred cEEEecCCcccccCCchhh----------------------------------------------------cccccceeE
Q 041463 154 ESLDLGDNNLSGNIPAWIG----------------------------------------------------ASMPGLLHI 181 (356)
Q Consensus 154 ~~L~l~~~~l~~~~~~~~~----------------------------------------------------~~~~~~L~~ 181 (356)
+.|++++|.+.+.+|..+. ..++ .++.
T Consensus 250 ~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~-~L~~ 328 (520)
T 2z7x_B 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS-PFLH 328 (520)
T ss_dssp SEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC-CCCE
T ss_pred cEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCC-cccE
Confidence 3333333333222222210 1111 2455
Q ss_pred EEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCch-hhhcccccC
Q 041463 182 LDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPA-ELTSLVHLG 260 (356)
Q Consensus 182 L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~L~ 260 (356)
|++++|.+.+..|..+..+++|+.+......... ....+..+..+++|+.|++++|.+.+..|. .+..+++|+
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKE------LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB------HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCc------cccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 5555555544444444444444443332221110 000112345566677777777766653333 355566677
Q ss_pred eEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCC-CcccCcCCCccccccC
Q 041463 261 TLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN-TNQFQTLNDPSIYEGN 339 (356)
Q Consensus 261 ~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~l~~~~~~~~~ 339 (356)
+|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++..++. +..++.|+.++
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~----- 474 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW----- 474 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-----
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEE-----
Confidence 777777776655444443 67888888888888 6777667899999999999999866555 46666666554
Q ss_pred ccccCCCCCCCCC
Q 041463 340 LALCGDPLPKKCP 352 (356)
Q Consensus 340 ~~~~~~~~~~~c~ 352 (356)
+.+|||.|+|+
T Consensus 475 --l~~N~~~c~c~ 485 (520)
T 2z7x_B 475 --LHTNPWDCSCP 485 (520)
T ss_dssp --CCSSCBCCCHH
T ss_pred --CcCCCCcccCC
Confidence 46789999996
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.1e-34 Score=250.55 Aligned_cols=260 Identities=33% Similarity=0.553 Sum_probs=228.8
Q ss_pred CCCcEEecCCCcccC--cCCCCCCcccCCcccccEEeccc-ccccccccccccCCCCCcEEEcccCcccccccccccCCC
Q 041463 51 NFPATVDLSSNNFEG--RLPLCIPKSIGNLKQLITLVISN-NNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLR 127 (356)
Q Consensus 51 ~~L~~L~l~~n~~~~--~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 127 (356)
.+++.|++++|.+.+ .+ |..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+....|..+..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~----~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPI----PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEEC----CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCccc----ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 579999999998876 43 46788899999999995 888888899999999999999999999888888899999
Q ss_pred CCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccC
Q 041463 128 TLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEP 207 (356)
Q Consensus 128 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~ 207 (356)
+|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+.. +...++.|++++|.+.+..|..+..+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~~~~l------- 197 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANL------- 197 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGC-------
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEECcCCeeeccCChHHhCC-------
Confidence 9999999999999888999999999999999999998788877765 33249999999999876666554332
Q ss_pred CCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEE
Q 041463 208 PKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLD 287 (356)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~ 287 (356)
. |+.|++++|.+.+..+..+..+++|++|++++|.+++..+. +..+++|++|+
T Consensus 198 -------------------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~ 250 (313)
T 1ogq_A 198 -------------------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLD 250 (313)
T ss_dssp -------------------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEE
T ss_pred -------------------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEE
Confidence 2 67799999999988888999999999999999999855554 78899999999
Q ss_pred ccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCccccccCccccCCCCCCCC
Q 041463 288 LSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKC 351 (356)
Q Consensus 288 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~c 351 (356)
+++|++++..|..+..+++|++|++++|++++.+|....++.|+.++ +.+|+.+||.|.. .|
T Consensus 251 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~-l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA-YANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG-TCSSSEEESTTSS-CC
T ss_pred CcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHH-hcCCCCccCCCCC-CC
Confidence 99999998899999999999999999999999999999999999999 8899999999876 45
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=268.12 Aligned_cols=119 Identities=24% Similarity=0.344 Sum_probs=94.5
Q ss_pred cccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCc-CCCCcCcCCCCCccEEEccCCcccccCCccccCcCC
Q 041463 228 YFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLV-GKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIF 306 (356)
Q Consensus 228 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 306 (356)
.+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 4566777888888888877767777788888888888888876 357778888888888888888888777888888888
Q ss_pred CCEEEcccCcccccCCCC-cccCcCCCccccccCccccCCCCCCCCCC
Q 041463 307 MNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCPE 353 (356)
Q Consensus 307 L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~~ 353 (356)
|++|++++|++++.+|.. ..++.|+.++ +.+|||.|+|+.
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------l~~N~~~~~~~~ 536 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIW-------LHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEE-------CCSSCBCCCTTT
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEEE-------ecCCcccCCCcc
Confidence 999999999888877764 6666666554 567899999975
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=264.07 Aligned_cols=304 Identities=22% Similarity=0.208 Sum_probs=253.5
Q ss_pred ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL 81 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 81 (356)
+++++|++++|.+++..+..|..+ ++|++|++++|.+++..+..+ ++++|++|++++|.+.. ++ +..|..+++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~---~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASF-PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IP---LGVFTGLSNL 106 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS-CC---TTSSTTCTTC
T ss_pred CCCcEEECCCCccceECHhHccCC-CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc-cC---cccccCCCCC
Confidence 468999999999998777888887 899999999999998777777 69999999999999873 22 2457889999
Q ss_pred cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCC
Q 041463 82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN 161 (356)
Q Consensus 82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 161 (356)
++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 99999999998788888999999999999999999888889999999999999999998655566889999999999999
Q ss_pred cccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeec
Q 041463 162 NLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLS 241 (356)
Q Consensus 162 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 241 (356)
.+.+..+..+ ..++. |+.|++++|...+.++.......+|+.+....... .......+..+++|+.|+++
T Consensus 187 ~i~~~~~~~~-~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 187 NINAIRDYSF-KRLYR-LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL--------TAVPYLAVRHLVYLRFLNLS 256 (477)
T ss_dssp CCCEECTTCS-CSCTT-CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC--------CSCCHHHHTTCTTCCEEECC
T ss_pred cCcEeChhhc-ccCcc-cceeeCCCCccccccCcccccCccccEEECcCCcc--------cccCHHHhcCccccCeeECC
Confidence 9885444333 33444 99999999887666665555444555433222111 11223456788999999999
Q ss_pred CCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccC
Q 041463 242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEI 321 (356)
Q Consensus 242 ~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 321 (356)
+|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|++....
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp SSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred CCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 99999888888999999999999999999888899999999999999999999777778899999999999999998653
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.6e-34 Score=270.32 Aligned_cols=327 Identities=19% Similarity=0.265 Sum_probs=240.3
Q ss_pred CcccceEEEccccccccc-----------------CCchHH--hhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCC
Q 041463 1 NQTELRTLVLNKARISDT-----------------IPDWFW--QLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSS 60 (356)
Q Consensus 1 ~l~~L~~L~l~~~~i~~~-----------------~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~ 60 (356)
++++|++|+|++|.+++. +|..+. .+ ++|++|++++|.+.+.+|..+ ++++|++|++++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc-CCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 478899999999999975 888887 77 899999999999998888877 599999999999
Q ss_pred Cc-ccC-cCCCCCCcccCCc------ccccEEecccccccccccc--cccCCCCCcEEEcccCcccccccccccCCCCCc
Q 041463 61 NN-FEG-RLPLCIPKSIGNL------KQLITLVISNNNLSGEIPL--LFSNSSFLYILDMSNNSLSGSIPESIGSLRTLR 130 (356)
Q Consensus 61 n~-~~~-~~~~~~~~~~~~l------~~L~~L~l~~~~i~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 130 (356)
|. +++ .+| ..+..+ ++|++|++++|.++ .+|. .+..+++|++|++++|.+.+..| .+..+++|+
T Consensus 283 n~~l~~~~lp----~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 283 NRGISGEQLK----DDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp CTTSCHHHHH----HHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred CCCCccccch----HHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 98 765 443 445444 88999999999888 6777 78888899999999988886666 777888888
Q ss_pred EEEeeccccccccCccccCCCC-CcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcC-------CCCC
Q 041463 131 FLVLRNNYLSGELPLSLKNCTF-MESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVG-------NLSD 202 (356)
Q Consensus 131 ~L~l~~~~l~~~~~~~l~~l~~-L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-------~l~~ 202 (356)
+|++++|.++ .+|..+..+++ |+.|++++|.+. .+|..+.......++.|++++|.+.+..|..+. .+.+
T Consensus 357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred EEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 8888888888 77777888888 888888888887 666654432212378888888887776666666 4445
Q ss_pred CcccCCCCCccC-------------CCeeeeec---CCccccc-------cccccccEEeecCCcccccCchhhh--ccc
Q 041463 203 MKVEPPKSVQHE-------------GRLRVVTK---GSERKYF-------TTLYLVNLLDLSSTNLSAEIPAELT--SLV 257 (356)
Q Consensus 203 L~~~~~~~~~~~-------------~~~~~~~~---~~~~~~~-------~~~~~L~~L~L~~~~l~~~~~~~~~--~~~ 257 (356)
|+.+........ ..+..... ......+ .++++|+.|++++|.+. .+|..+. .++
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 513 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP 513 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC
Confidence 544333221111 01111000 0111111 12338888999998888 5666665 788
Q ss_pred ccCeEEccCCcCcCCCCcCcCCCCCccEEEc------cCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCC
Q 041463 258 HLGTLNLSHNHLVGKIPEEIGNFEWLETLDL------SKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLN 331 (356)
Q Consensus 258 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L------~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~ 331 (356)
+|++|++++|.+++ +|..+..+++|++|++ ++|++.+.+|..+..+++|++|++++|++ +.+|... .+.|+
T Consensus 514 ~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~ 590 (636)
T 4eco_A 514 YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNIS 590 (636)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCC
T ss_pred CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCC
Confidence 89999999999885 7888888899999998 45667778888888899999999999999 4555542 26777
Q ss_pred CccccccCcc
Q 041463 332 DPSIYEGNLA 341 (356)
Q Consensus 332 ~~~~~~~~~~ 341 (356)
.++ +.+|+.
T Consensus 591 ~L~-Ls~N~l 599 (636)
T 4eco_A 591 VLD-IKDNPN 599 (636)
T ss_dssp EEE-CCSCTT
T ss_pred EEE-CcCCCC
Confidence 777 555543
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.3e-34 Score=272.42 Aligned_cols=297 Identities=19% Similarity=0.235 Sum_probs=175.7
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCc-cCC-cCCCCC-CC------CCCcEEecCCCcccCcCCCCCC
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNE-LRG-RVPNSL-GF------NFPATVDLSSNNFEGRLPLCIP 72 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~-~~------~~L~~L~l~~n~~~~~~~~~~~ 72 (356)
+++|++|++++|.+.+.+|..+.++ ++|++|++++|. +++ .+|..+ .+ ++|++|++++|.++ . +|
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~----ip 321 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T----FP 321 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTC-SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S----CC
T ss_pred cCCCCEEEecCCcCCccChHHHhcC-CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c----cC
Confidence 4566666666666666666666555 566666666665 554 333332 12 55556666555554 2 33
Q ss_pred c--ccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCC-CcEEEeeccccc---------
Q 041463 73 K--SIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRT-LRFLVLRNNYLS--------- 140 (356)
Q Consensus 73 ~--~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~--------- 140 (356)
. .+..+++|++|++++|.+.+.+| .+..+++|++|++++|.+. ..|..+..+++ |++|++++|.++
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~ 399 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhc
Confidence 4 45555555555555555554444 4555555555555555554 44444444444 555555555554
Q ss_pred ----------------cccCcccc-------CCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCc
Q 041463 141 ----------------GELPLSLK-------NCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRV 197 (356)
Q Consensus 141 ----------------~~~~~~l~-------~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 197 (356)
+..|..+. .+++|+.|++++|.+. .+|..+...++. |+.|++++|.+. .+|...
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~-L~~L~Ls~N~l~-~i~~~~ 476 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSP-LSSINLMGNMLT-EIPKNS 476 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCC-CSEEECCSSCCS-BCCSSS
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCC-CCEEECCCCCCC-CcCHHH
Confidence 33333333 3344444444444444 333333322222 455555555444 222221
Q ss_pred CC-C-------CCCcccCCCCCccCCCeeeeecCCcccccc--ccccccEEeecCCcccccCchhhhcccccCeEEc---
Q 041463 198 GN-L-------SDMKVEPPKSVQHEGRLRVVTKGSERKYFT--TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNL--- 264 (356)
Q Consensus 198 ~~-l-------~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L--- 264 (356)
.. . ++|+.+........ ..+..+. .+++|+.|++++|.+.+ .|..+..+++|++|++
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~---------~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLT---------KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCC---------BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred hccccccccccCCccEEECcCCcCC---------ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 11 1 12332222211111 1223343 88999999999999996 7888889999999999
Q ss_pred ---cCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCC
Q 041463 265 ---SHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIP 322 (356)
Q Consensus 265 ---~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 322 (356)
++|.+.+.+|..+..+++|++|++++|+++ .+|..+. ++|+.|++++|++.....
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence 457777789999999999999999999996 6777655 799999999999986554
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-33 Score=264.63 Aligned_cols=143 Identities=20% Similarity=0.164 Sum_probs=104.9
Q ss_pred ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL 81 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 81 (356)
++|++|++++|.+++..|..+..+ ++|++|++++|.+++..+..+ ++++|++|++++|.+.+. .+..+..+++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL----SSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC----CHHHHTTCTTC
T ss_pred CCccEEECcCCccCccChhhhhcC-CcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc----CHHHhccCCCC
Confidence 468888888888887767777776 788888888888887666665 588888888888887742 23447778888
Q ss_pred cEEeccccccccc-ccccccCCCCCcEEEcccCc-ccccccccccCCCCCcEEEeeccccccccCccccCC
Q 041463 82 ITLVISNNNLSGE-IPLLFSNSSFLYILDMSNNS-LSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNC 150 (356)
Q Consensus 82 ~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 150 (356)
++|++++|.+.+. .+..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 8888888887653 45667788888888888887 443334567777888888888877776555555443
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6e-33 Score=263.30 Aligned_cols=146 Identities=15% Similarity=0.058 Sum_probs=76.6
Q ss_pred cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463 4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI 82 (356)
Q Consensus 4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 82 (356)
++++|++++|.+++..|..|..+ ++|++|++++|.+.+..+..+ ++++|++|++++|.+.+. .|..|..+++|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~ 108 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM----AETALSGPKALK 108 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE----CTTTTSSCTTCC
T ss_pred cCcEEEccCCccCcCChhHhccC-ccceEEECCCCccceeChhhccCccccCeeeCCCCccccc----Chhhhccccccc
Confidence 35666666666665555555555 566666666666655545544 456666666666655532 224455555555
Q ss_pred EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCc
Q 041463 83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFME 154 (356)
Q Consensus 83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 154 (356)
+|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|+
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 555555555544444455555555555555555533323333355555555555554433333333444433
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=275.16 Aligned_cols=246 Identities=17% Similarity=0.130 Sum_probs=124.0
Q ss_pred CcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEc
Q 041463 105 LYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDL 184 (356)
Q Consensus 105 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l 184 (356)
|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.. ++. |+.|++
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~-L~~L~L 345 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG-LPK-VAYIDL 345 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS-CTT-CCEEEC
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcC-CCC-CCEEEC
Confidence 333333333333333344444555555555555555444555555555666666655554333333322 222 566666
Q ss_pred ccCcccccCCCCcCCCCCCcccCCCCCccCC--------CeeeeecC------------------------Ccccccccc
Q 041463 185 SHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG--------RLRVVTKG------------------------SERKYFTTL 232 (356)
Q Consensus 185 ~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~--------~~~~~~~~------------------------~~~~~~~~~ 232 (356)
++|.+....+..+..+++|+.+......... .+...... .....+..+
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l 425 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV 425 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcC
Confidence 6665554444445555555443222111100 00000000 000112255
Q ss_pred ccccEEeecCCcccccCch-hhhcccccCeEEccCCcCcC-----CCCcCcCCCCCccEEEccCCcccccCCccccCcCC
Q 041463 233 YLVNLLDLSSTNLSAEIPA-ELTSLVHLGTLNLSHNHLVG-----KIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIF 306 (356)
Q Consensus 233 ~~L~~L~L~~~~l~~~~~~-~~~~~~~L~~L~L~~n~i~~-----~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 306 (356)
++|+.|++++|.+.+..+. .+..+++|++|++++|.+.. ..+..+..+++|+.|+|++|++++..+..|.++++
T Consensus 426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred CccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 6666677766666532221 23334556666666665541 22344566677777777777777666666777777
Q ss_pred CCEEEcccCcccccCCCCcccCcCCCcccccc--------------CccccCCCCCCCCCC
Q 041463 307 MNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEG--------------NLALCGDPLPKKCPE 353 (356)
Q Consensus 307 L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~--------------~~~~~~~~~~~~c~~ 353 (356)
|+.|+|++|++++.+|.... +.|+.+++-.+ .+.+.||||.|+|+.
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSC
T ss_pred hheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHhCCcCEEEecCCCccccccc
Confidence 77777777777765554422 44444331111 234668999999975
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.4e-33 Score=263.92 Aligned_cols=301 Identities=19% Similarity=0.173 Sum_probs=242.4
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ 80 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 80 (356)
+++++.|+++++.+....+..+..+ ++|++|++++|.+.+..+..+ .+++|++|++++|.+.+. .+..|..+++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL----PPHVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccC-CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC----CHHHHcCCCC
Confidence 4678999999999985444445555 899999999999998777666 699999999999998853 2356788999
Q ss_pred ccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecC
Q 041463 81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGD 160 (356)
Q Consensus 81 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 160 (356)
|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+++. .+..+++|+.|++++
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY 201 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCS
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhhhccc
Confidence 99999999999866666689999999999999999988888899999999999999999843 356788999999999
Q ss_pred CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463 161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL 240 (356)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 240 (356)
|.+.+.. .+..++.|++++|.+....+.... +|+.+........ ....+..+++|+.|++
T Consensus 202 n~l~~l~-------~~~~L~~L~ls~n~l~~~~~~~~~---~L~~L~L~~n~l~----------~~~~l~~l~~L~~L~L 261 (597)
T 3oja_B 202 NLLSTLA-------IPIAVEELDASHNSINVVRGPVNV---ELTILKLQHNNLT----------DTAWLLNYPGLVEVDL 261 (597)
T ss_dssp SCCSEEE-------CCTTCSEEECCSSCCCEEECSCCS---CCCEEECCSSCCC----------CCGGGGGCTTCSEEEC
T ss_pred Ccccccc-------CCchhheeeccCCcccccccccCC---CCCEEECCCCCCC----------CChhhccCCCCCEEEC
Confidence 9876321 223489999999988754333332 3443333322211 1245778899999999
Q ss_pred cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccccc
Q 041463 241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGE 320 (356)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 320 (356)
++|.+.+..|..+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++.
T Consensus 262 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 262 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred CCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc
Confidence 999999888889999999999999999998 46777788999999999999999 6777788899999999999999876
Q ss_pred CCCCcccCcCCCcc
Q 041463 321 IPNTNQFQTLNDPS 334 (356)
Q Consensus 321 ~~~~~~l~~l~~~~ 334 (356)
. ...++.|+.++
T Consensus 340 ~--~~~~~~L~~L~ 351 (597)
T 3oja_B 340 K--LSTHHTLKNLT 351 (597)
T ss_dssp C--CCTTCCCSEEE
T ss_pred C--hhhcCCCCEEE
Confidence 4 55677777666
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.8e-33 Score=266.05 Aligned_cols=338 Identities=19% Similarity=0.201 Sum_probs=221.5
Q ss_pred cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463 4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI 82 (356)
Q Consensus 4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 82 (356)
++++|+|++|.|++..+..|..+ ++|++|+|++|.+++..+.++ ++++|++|+|++|++++ +| +..|..+++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l-~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~---~~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LA---LGAFSGLSSLQ 127 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-EC---GGGGTTCTTCC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCC-CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CC---HHHhcCCCCCC
Confidence 68999999999987767778877 899999999999987777777 58999999999998873 22 35688899999
Q ss_pred EEecccccccccccccccCCCCCcEEEcccCccccc-ccccccCCCCCcEEEeeccccccccCccccCCCC----CcEEE
Q 041463 83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS-IPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTF----MESLD 157 (356)
Q Consensus 83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~----L~~L~ 157 (356)
+|++++|.+++..+..|+.+++|++|++++|.+... .|..+..+++|++|++++|.+++..+..+..+.+ ...++
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 999999999877677789999999999999988753 4667788899999999998876544333322111 11222
Q ss_pred ecCCcccccCCchh------------------------------------------------------------------
Q 041463 158 LGDNNLSGNIPAWI------------------------------------------------------------------ 171 (356)
Q Consensus 158 l~~~~l~~~~~~~~------------------------------------------------------------------ 171 (356)
++.|.+....+...
T Consensus 208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence 22221110000000
Q ss_pred -----------------------------------hcccccceeEEEcccCcccccCCCCc-------------------
Q 041463 172 -----------------------------------GASMPGLLHILDLSHNDLSGFIPPRV------------------- 197 (356)
Q Consensus 172 -----------------------------------~~~~~~~L~~L~l~~~~l~~~~~~~~------------------- 197 (356)
.......++.|++.++.+.......+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 00000013333333333221111111
Q ss_pred CCCCCCcccCCCCCc-----------------------------------cCCCeeee----------------------
Q 041463 198 GNLSDMKVEPPKSVQ-----------------------------------HEGRLRVV---------------------- 220 (356)
Q Consensus 198 ~~l~~L~~~~~~~~~-----------------------------------~~~~~~~~---------------------- 220 (356)
..+++++........ ....+...
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 111122111000000 00000000
Q ss_pred ---------ecCCccccccccccccEEeecCCccc-ccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccC
Q 041463 221 ---------TKGSERKYFTTLYLVNLLDLSSTNLS-AEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSK 290 (356)
Q Consensus 221 ---------~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~ 290 (356)
........+..++.++.|++++|.+. ...|..|..+++|++|++++|.+++..|..|..+++|++|+|++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 00111223445667788888887643 34566788888999999999999877788899999999999999
Q ss_pred CcccccCCccccCcCCCCEEEcccCcccccCCCC-ccc-CcCCCccccccCccccCCCCCCCCCC
Q 041463 291 NKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQF-QTLNDPSIYEGNLALCGDPLPKKCPE 353 (356)
Q Consensus 291 n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l-~~l~~~~~~~~~~~~~~~~~~~~c~~ 353 (356)
|++++..+..|.++++|++|++++|++++.+|.. ..+ +.|+.+ .+.||||.|||+.
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L-------~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL-------NLTQNDFACTCEH 585 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE-------ECTTCCBCCSGGG
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE-------EeeCCCCcccCCc
Confidence 9999778888999999999999999999888876 444 345544 4567999999973
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-33 Score=258.76 Aligned_cols=317 Identities=19% Similarity=0.196 Sum_probs=251.0
Q ss_pred CcccceEEEcccccccccC-CchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCc
Q 041463 1 NQTELRTLVLNKARISDTI-PDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNL 78 (356)
Q Consensus 1 ~l~~L~~L~l~~~~i~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 78 (356)
++++|++|++++|.+.+.+ +..|..+ ++|++|++++|.+++..+..+ ++++|++|++++|.+++..+. ...+..+
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~l 128 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGL-SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPL 128 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTC-TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH--SSTTTTC
T ss_pred cCccccEEECcCCcccceECccccccc-ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccC--cccccCc
Confidence 4789999999999987544 4556666 899999999999998777777 599999999999998753221 1337889
Q ss_pred ccccEEeccccccccccccc-ccCCCCCcEEEcccCcccccccccccCC--CCCcEEEeeccccccccCcc--------c
Q 041463 79 KQLITLVISNNNLSGEIPLL-FSNSSFLYILDMSNNSLSGSIPESIGSL--RTLRFLVLRNNYLSGELPLS--------L 147 (356)
Q Consensus 79 ~~L~~L~l~~~~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~~~~~~--------l 147 (356)
++|++|++++|.+.+..|.. +..+++|++|++++|.+....+..+..+ .+|+.|++++|.+.+..+.. +
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence 99999999999998776765 8899999999999999987777766654 56777777777766433222 2
Q ss_pred cCCCCCcEEEecCCcccccCCchhhcc-------------------------------------cccceeEEEcccCccc
Q 041463 148 KNCTFMESLDLGDNNLSGNIPAWIGAS-------------------------------------MPGLLHILDLSHNDLS 190 (356)
Q Consensus 148 ~~l~~L~~L~l~~~~l~~~~~~~~~~~-------------------------------------~~~~L~~L~l~~~~l~ 190 (356)
..+++|+.|++++|.+.+..+..+... ....++.|++++|.+.
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 288 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc
Confidence 345667777777776654333222111 1134899999999998
Q ss_pred ccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCc
Q 041463 191 GFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLV 270 (356)
Q Consensus 191 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~ 270 (356)
+..+..+..+++|+.+........ ...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 289 ~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 289 ALLKSVFSHFTDLEQLTLAQNEIN--------KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCC--------EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred ccchhhcccCCCCCEEECCCCccc--------ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence 888888999998888665543322 123445778899999999999999888889999999999999999999
Q ss_pred CCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccC
Q 041463 271 GKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQ 328 (356)
Q Consensus 271 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~ 328 (356)
+..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|....+.
T Consensus 361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~ 418 (455)
T 3v47_A 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 418 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHH
T ss_pred ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHH
Confidence 7788999999999999999999997777788999999999999999999999775553
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.2e-32 Score=258.32 Aligned_cols=157 Identities=25% Similarity=0.176 Sum_probs=108.8
Q ss_pred ceeEEEcccCccccc--CCCCcCCCCCCcccCCCCCcc---------CCCeeeee------cCCcc-ccccccccccEEe
Q 041463 178 LLHILDLSHNDLSGF--IPPRVGNLSDMKVEPPKSVQH---------EGRLRVVT------KGSER-KYFTTLYLVNLLD 239 (356)
Q Consensus 178 ~L~~L~l~~~~l~~~--~~~~~~~l~~L~~~~~~~~~~---------~~~~~~~~------~~~~~-~~~~~~~~L~~L~ 239 (356)
.++.|++++|.+.+. .+..+..+++|+.+....... ...+.... ....+ ..+..+++|+.|+
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence 389999999998755 366777777777755443221 11111111 11111 3456677788888
Q ss_pred ecCCcccccCchhhhcccccCeEEccCCcCcC-CCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463 240 LSSTNLSAEIPAELTSLVHLGTLNLSHNHLVG-KIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS 318 (356)
Q Consensus 240 L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 318 (356)
+++|.+.+..+..+..+++|++|++++|.+.+ ..|..++.+++|++|++++|++++..|..+.++++|++|++++|+++
T Consensus 431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence 88887776677777777888888888888775 35777778888888888888887777777788888888888888888
Q ss_pred ccCCCC-cccCcCCCcc
Q 041463 319 GEIPNT-NQFQTLNDPS 334 (356)
Q Consensus 319 ~~~~~~-~~l~~l~~~~ 334 (356)
+.+|.. ..++.|+.++
T Consensus 511 ~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 511 FLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp CEEGGGTTTCTTCCEEE
T ss_pred CcCHHHccCCCcCCEEE
Confidence 776554 6677777777
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.5e-32 Score=262.02 Aligned_cols=322 Identities=17% Similarity=0.229 Sum_probs=249.1
Q ss_pred CcccceEEEcccccccccCCchHHhhccCCcEeeccCCc-cCC-cCCC--------CCCCCCCcEEecCCCcccCcCCCC
Q 041463 1 NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNE-LRG-RVPN--------SLGFNFPATVDLSSNNFEGRLPLC 70 (356)
Q Consensus 1 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~--------~~~~~~L~~L~l~~n~~~~~~~~~ 70 (356)
++++|++|+|++|.+.+.+|..+..+ ++|++|++++|. +++ .+|. ...+++|++|++++|.+. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L-~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~---- 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDL-PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-E---- 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGC-SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-B----
T ss_pred cCCCCCEEECcCCCCCccChHHHhCC-CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-c----
Confidence 46889999999999999999989888 899999999998 776 4443 234679999999999988 3
Q ss_pred CCc--ccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCC-CcEEEeeccccccccCccc
Q 041463 71 IPK--SIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRT-LRFLVLRNNYLSGELPLSL 147 (356)
Q Consensus 71 ~~~--~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~~~~~~l 147 (356)
+|. .+..+++|+.|++++|.+. .+| .|..+++|++|++++|.+. ..|..+..+++ |++|++++|.++ .+|..+
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~ 638 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF 638 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence 556 7889999999999999998 677 8899999999999999999 77878888888 999999999998 778777
Q ss_pred cCCCC--CcEEEecCCcccccCCchh---hcccccceeEEEcccCcccccCCCCc-CCCCCCcccCCCCCccCCCeeeee
Q 041463 148 KNCTF--MESLDLGDNNLSGNIPAWI---GASMPGLLHILDLSHNDLSGFIPPRV-GNLSDMKVEPPKSVQHEGRLRVVT 221 (356)
Q Consensus 148 ~~l~~--L~~L~l~~~~l~~~~~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~~~~~~~~~~~~~~~~~ 221 (356)
..++. |+.|++++|.+.+..|... .......|+.|++++|.+. .+|..+ ..+++|+.+........ .++...
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 76654 9999999999876554322 1111124999999999988 455443 36777776555443222 111111
Q ss_pred cCCccccccccccccEEeecCCcccccCchhhh--cccccCeEEccCCcCcCCCCcCcCCCCCccEEEccC------Ccc
Q 041463 222 KGSERKYFTTLYLVNLLDLSSTNLSAEIPAELT--SLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSK------NKL 293 (356)
Q Consensus 222 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~--~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~------n~i 293 (356)
.........++++|+.|+|++|.+. .+|..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|+|++ |.+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence 1111112345568999999999998 5666775 88999999999999985 788888999999999976 777
Q ss_pred cccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCccccccC
Q 041463 294 SGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGN 339 (356)
Q Consensus 294 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~ 339 (356)
.+.+|..+..+++|+.|+|++|++ +.+|... .+.|+.++ +.+|
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~Ld-Ls~N 837 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILD-IADN 837 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEE-CCSC
T ss_pred cccChHHHhcCCCCCEEECCCCCC-CccCHhh-cCCCCEEE-CCCC
Confidence 778898999999999999999999 5666542 36777777 4444
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.9e-32 Score=262.35 Aligned_cols=303 Identities=20% Similarity=0.227 Sum_probs=170.4
Q ss_pred CCchHHhhccCCcEeeccCCccCC-----------------cCCCCC---CCCCCcEEecCCCcccCcCCCCCCcccCCc
Q 041463 19 IPDWFWQLSLTLDELDVAYNELRG-----------------RVPNSL---GFNFPATVDLSSNNFEGRLPLCIPKSIGNL 78 (356)
Q Consensus 19 ~~~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 78 (356)
+|..+..+ ++|++|+|++|.+++ .+|..+ ++++|++|++++|.+.+. +|..+..+
T Consensus 440 IP~~l~~L-~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~----iP~~l~~L 514 (876)
T 4ecn_A 440 ISKAIQRL-TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ----LPDFLYDL 514 (876)
T ss_dssp ECGGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS----CCGGGGGC
T ss_pred hhHHHhcC-CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc----ChHHHhCC
Confidence 45555555 666777777666665 134433 466677777766665553 33556666
Q ss_pred ccccEEeccccc-ccc-cccccccCCC-------CCcEEEcccCcccccccc--cccCCCCCcEEEeeccccccccCccc
Q 041463 79 KQLITLVISNNN-LSG-EIPLLFSNSS-------FLYILDMSNNSLSGSIPE--SIGSLRTLRFLVLRNNYLSGELPLSL 147 (356)
Q Consensus 79 ~~L~~L~l~~~~-i~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~~~~~~l 147 (356)
++|++|++++|. +++ .+|..+..++ +|++|++++|.+. ..|. .+..+++|++|++++|.++ .+| .+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hh
Confidence 666666666665 554 4554444333 6666666666666 4555 5666666666666666666 455 56
Q ss_pred cCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCC--CcccCCCCCccCCCe--------
Q 041463 148 KNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSD--MKVEPPKSVQHEGRL-------- 217 (356)
Q Consensus 148 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~--L~~~~~~~~~~~~~~-------- 217 (356)
..+++|+.|++++|.+. .+|..+.. ++..|+.|++++|.+. .+|..+..+.. |+.+........+..
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred cCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 66666666666666665 55544332 2222666666666655 44544444332 333222222111110
Q ss_pred -------eeee------cCCccccccccccccEEeecCCcccccCchhhh-------cccccCeEEccCCcCcCCCCcCc
Q 041463 218 -------RVVT------KGSERKYFTTLYLVNLLDLSSTNLSAEIPAELT-------SLVHLGTLNLSHNHLVGKIPEEI 277 (356)
Q Consensus 218 -------~~~~------~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-------~~~~L~~L~L~~n~i~~~~~~~~ 277 (356)
.... .......+..+++|+.|+|++|.+.......+. ++++|++|+|++|.++ .+|..+
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l 747 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDF 747 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGG
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHh
Confidence 0000 011122233556677777777776632222222 1226777777777776 566666
Q ss_pred C--CCCCccEEEccCCcccccCCccccCcCCCCEEEccc------CcccccCCCC-cccCcCCCcc
Q 041463 278 G--NFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSY------NNLSGEIPNT-NQFQTLNDPS 334 (356)
Q Consensus 278 ~--~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~------n~~~~~~~~~-~~l~~l~~~~ 334 (356)
. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|.. ..++.|+.++
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~ 812 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812 (876)
T ss_dssp STTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred hhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence 5 67777777777777774 566666777777777755 5566666643 6666676666
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.98 E-value=6.5e-31 Score=252.60 Aligned_cols=327 Identities=21% Similarity=0.189 Sum_probs=239.5
Q ss_pred cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC----------------------------------C
Q 041463 4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL----------------------------------G 49 (356)
Q Consensus 4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------------------------~ 49 (356)
+|++|++++|.+++..+..+..+ ++|++|++++|.+.+..+..+ .
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCCEEECCCCCcCccCcccccCc-ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 47777777777776666666665 677777777776665443322 3
Q ss_pred CCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccc--ccccccCC--CCCcEEEcccCcccccccccccC
Q 041463 50 FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE--IPLLFSNS--SFLYILDMSNNSLSGSIPESIGS 125 (356)
Q Consensus 50 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~ 125 (356)
+++|++|++++|.+.+. .+..|..+++|++|++++|.+... ....|..+ +.|++|++++|.+....+..+..
T Consensus 328 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGI----KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp CTTCCEEECCSCCBCCC----CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred CCCCCEEECCCCccCCC----ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 56677777777776642 345688899999999999875322 22233332 57999999999998888888888
Q ss_pred CCCCcEEEeeccccccccC-ccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCccc--ccCCCCcCCCCC
Q 041463 126 LRTLRFLVLRNNYLSGELP-LSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLS--GFIPPRVGNLSD 202 (356)
Q Consensus 126 l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~ 202 (356)
+++|++|++++|.+++.++ ..+..+++|+.|++++|.+.+..+..+. .++. ++.|++.+|.+. +..|..+..+++
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~-L~~L~l~~n~l~~~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPS-LQRLMLRRVALKNVDSSPSPFQPLRN 481 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTT-CCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-cCcc-cccchhccccccccccCCcccccCCC
Confidence 9999999999999876555 5788889999999999987744444443 3444 899999888775 456777888888
Q ss_pred CcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCc--------hhhhcccccCeEEccCCcCcCCCC
Q 041463 203 MKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIP--------AELTSLVHLGTLNLSHNHLVGKIP 274 (356)
Q Consensus 203 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--------~~~~~~~~L~~L~L~~n~i~~~~~ 274 (356)
|+.+........ ...+..+..+++|+.|++++|.+.+... ..+..+++|++|++++|.+....+
T Consensus 482 L~~L~Ls~N~l~--------~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 482 LTILDLSNNNIA--------NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp CCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCEEECCCCCCC--------cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 877555443221 2234456778889999999988875422 236778889999999998884444
Q ss_pred cCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-c-ccCcCCCccccccCccccCCC
Q 041463 275 EEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-N-QFQTLNDPSIYEGNLALCGDP 346 (356)
Q Consensus 275 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~-~l~~l~~~~~~~~~~~~~~~~ 346 (356)
..|..+++|++|++++|++++..+..|..+++|+.|++++|++++.+|.. . .++.|+.++ +.+|+..|..+
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~-l~~N~~~c~c~ 626 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD-MRFNPFDCTCE 626 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEE-CTTCCCCBCCC
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEE-ccCCCcccCCc
Confidence 56888899999999999998767777888889999999999988877765 2 578888888 78888888654
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=5.7e-31 Score=232.71 Aligned_cols=301 Identities=20% Similarity=0.320 Sum_probs=240.7
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL 81 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 81 (356)
+++|++|+++++.+.. ++ .+..+ ++|++|++++|.+++..+ +..+++|++|++++|.++. + ..+..+++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~-~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-----~-~~~~~l~~L 112 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYL-TNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-----I-SALQNLTNL 112 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGC-TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----C-GGGTTCTTC
T ss_pred cccccEEEEeCCcccc-ch-hhhhc-CCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-----c-hHHcCCCcC
Confidence 5789999999999974 44 36666 899999999999985544 5579999999999998873 2 358899999
Q ss_pred cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCC
Q 041463 82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN 161 (356)
Q Consensus 82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 161 (356)
++|++++|.+.+..+ +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999999999985433 889999999999999765333 348899999999999999874332 888999999999999
Q ss_pred cccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeec
Q 041463 162 NLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLS 241 (356)
Q Consensus 162 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 241 (356)
.+.+ .+. + ..++. ++.+++++|.+.+..+ +..+++|+.+......... ...+..+++|+.|+++
T Consensus 188 ~l~~-~~~-~-~~l~~-L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~----------~~~~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 188 QIED-ISP-L-ASLTS-LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD----------LSPLANLSQLTWLEIG 251 (347)
T ss_dssp CCCC-CGG-G-GGCTT-CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC----------CGGGTTCTTCCEEECC
T ss_pred cccc-ccc-c-cCCCc-cceeecccCCCCCCch--hhcCCcCCEEEccCCccCC----------CcchhcCCCCCEEECC
Confidence 9873 333 2 22333 9999999998875433 6667777665544432211 1116788999999999
Q ss_pred CCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccC
Q 041463 242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEI 321 (356)
Q Consensus 242 ~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 321 (356)
+|.+.+. ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus 252 ~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 252 TNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred CCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence 9999853 468889999999999999984 3 46788999999999999999888888999999999999999999887
Q ss_pred CCCcccCcCCCccccccC
Q 041463 322 PNTNQFQTLNDPSIYEGN 339 (356)
Q Consensus 322 ~~~~~l~~l~~~~~~~~~ 339 (356)
| ...++.|+.++ +.+|
T Consensus 328 ~-~~~l~~L~~L~-l~~N 343 (347)
T 4fmz_A 328 P-LASLSKMDSAD-FANQ 343 (347)
T ss_dssp G-GGGCTTCSEES-SSCC
T ss_pred C-hhhhhccceee-hhhh
Confidence 7 88888888887 4333
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=2e-31 Score=250.39 Aligned_cols=334 Identities=17% Similarity=0.150 Sum_probs=223.2
Q ss_pred ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL 81 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 81 (356)
+++++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ++++|++|++++|.++ .+| .. .+++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp----~~--~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFL-SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS----CC--PMASL 123 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EEC----SC--CCTTC
T ss_pred CCcCEEECCCCCccccChhhhccC-CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccC----cc--ccccC
Confidence 468899999999987666777777 889999999999887777766 5889999999999887 333 33 68888
Q ss_pred cEEeccccccccc-ccccccCCCCCcEEEcccCcccccccccccCCCCC--cEEEeecccc--ccccCccccCCC-----
Q 041463 82 ITLVISNNNLSGE-IPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTL--RFLVLRNNYL--SGELPLSLKNCT----- 151 (356)
Q Consensus 82 ~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~l--~~~~~~~l~~l~----- 151 (356)
++|++++|.+.+. .|..|..+++|++|++++|.+.... +..+++| ++|++++|.+ ++..+..+..+.
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~ 200 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEE
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceEE
Confidence 8889988888753 3577888888888888888776422 2333333 6666666655 333333322211
Q ss_pred ----------------------------------------------------------------------------CCcE
Q 041463 152 ----------------------------------------------------------------------------FMES 155 (356)
Q Consensus 152 ----------------------------------------------------------------------------~L~~ 155 (356)
+|++
T Consensus 201 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~ 280 (562)
T 3a79_B 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280 (562)
T ss_dssp EEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEE
T ss_pred EEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccE
Confidence 4555
Q ss_pred EEecCCcccccCCchhh----------------------------------------------------cccccceeEEE
Q 041463 156 LDLGDNNLSGNIPAWIG----------------------------------------------------ASMPGLLHILD 183 (356)
Q Consensus 156 L~l~~~~l~~~~~~~~~----------------------------------------------------~~~~~~L~~L~ 183 (356)
|++++|.+.+.+|..++ ... ..++.|+
T Consensus 281 L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l-~~L~~L~ 359 (562)
T 3a79_B 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP-SSFTFLN 359 (562)
T ss_dssp EEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSC-CCCCEEE
T ss_pred EEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCC-CCceEEE
Confidence 55555554433333220 112 2377777
Q ss_pred cccCcccccCCCCcCCCCCCcccCCCCCccCC------------Ceeeee------cC-CccccccccccccEEeecCCc
Q 041463 184 LSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG------------RLRVVT------KG-SERKYFTTLYLVNLLDLSSTN 244 (356)
Q Consensus 184 l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~------------~~~~~~------~~-~~~~~~~~~~~L~~L~L~~~~ 244 (356)
+++|.+.+..+..+..+++|+.+......... .+.... .. .....+..+++|+.|++++|.
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 77777776666677777766664443322111 111111 11 223346778999999999999
Q ss_pred ccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC
Q 041463 245 LSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT 324 (356)
Q Consensus 245 l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 324 (356)
+.+..+..+. ++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+-.
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred CCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 9865554443 68999999999998 78887779999999999999999444444899999999999999998765543
Q ss_pred cccCcC---CCccccccCccccCCCCCCCCCC
Q 041463 325 NQFQTL---NDPSIYEGNLALCGDPLPKKCPE 353 (356)
Q Consensus 325 ~~l~~l---~~~~~~~~~~~~~~~~~~~~c~~ 353 (356)
..+..+ .... +. +...|+.|+...|..
T Consensus 517 ~~~~~~~~~~~~~-~~-~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 517 RYLSEWINKHSGV-VR-NSAGSVAPDSAKCSG 546 (562)
T ss_dssp HHHHHHHHHTTTT-EE-CSSSSBCSSSSCBSS
T ss_pred HHHHHHHHhcCCc-cc-ccccCCCCCCCccCC
Confidence 221211 1111 11 112347788888865
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.4e-31 Score=232.77 Aligned_cols=250 Identities=29% Similarity=0.442 Sum_probs=214.9
Q ss_pred cCCcEeeccCCccCC--cCCCCC-CCCCCcEEecCC-CcccCcCCCCCCcccCCcccccEEecccccccccccccccCCC
Q 041463 28 LTLDELDVAYNELRG--RVPNSL-GFNFPATVDLSS-NNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSS 103 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~--~~~~~~-~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~ 103 (356)
.++++|+++++.+.+ ..+..+ ++++|++|++++ |.+.+. +|..+..+++|++|++++|.+.+..|..|..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc----CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 478899999999887 666666 589999999995 877764 457788899999999999999888888999999
Q ss_pred CCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCC-CCcEEEecCCcccccCCchhhcccccceeEE
Q 041463 104 FLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCT-FMESLDLGDNNLSGNIPAWIGASMPGLLHIL 182 (356)
Q Consensus 104 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L 182 (356)
+|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..++ +|+.|++++|.+.+..|..+... . ++.|
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~--L~~L 202 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-N--LAFV 202 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-C--CSEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-c--ccEE
Confidence 999999999999988888899999999999999999888899999888 99999999999987777776553 3 9999
Q ss_pred EcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeE
Q 041463 183 DLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTL 262 (356)
Q Consensus 183 ~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 262 (356)
++++|.+.+..+..+ ..+++|+.|++++|.+.+..+. +..+++|++|
T Consensus 203 ~Ls~N~l~~~~~~~~--------------------------------~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L 249 (313)
T 1ogq_A 203 DLSRNMLEGDASVLF--------------------------------GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGL 249 (313)
T ss_dssp ECCSSEEEECCGGGC--------------------------------CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEE
T ss_pred ECcCCcccCcCCHHH--------------------------------hcCCCCCEEECCCCceeeecCc-ccccCCCCEE
Confidence 999998876555444 3455666799999999865554 7778999999
Q ss_pred EccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463 263 NLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS 318 (356)
Q Consensus 263 ~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 318 (356)
++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+..
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 99999999889999999999999999999999888876 88999999999999844
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.6e-30 Score=225.23 Aligned_cols=267 Identities=20% Similarity=0.240 Sum_probs=184.5
Q ss_pred cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463 4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI 82 (356)
Q Consensus 4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 82 (356)
++++++++++.++ .+|..+. +++++|++++|.+++..+..+ ++++|++|++++|.+++. .|..+..+++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI----SPGAFAPLVKLE 103 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB----CTTTTTTCTTCC
T ss_pred CCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee----CHHHhcCCCCCC
Confidence 5677777777776 3554332 577778888777776655444 577788888887777642 245677777788
Q ss_pred EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeecccccc--ccCccccCCCCCcEEEecC
Q 041463 83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSG--ELPLSLKNCTFMESLDLGD 160 (356)
Q Consensus 83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~ 160 (356)
+|++++|.+. .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++
T Consensus 104 ~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 104 RLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp EEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred EEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 8888777776 3343332 677788887777776666667777778888887777643 4556677777788888877
Q ss_pred CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463 161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL 240 (356)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 240 (356)
|.+. .++..+. ..++.|++++|.+.+..+..+ ..+++|+.|++
T Consensus 181 n~l~-~l~~~~~----~~L~~L~l~~n~l~~~~~~~~--------------------------------~~l~~L~~L~L 223 (330)
T 1xku_A 181 TNIT-TIPQGLP----PSLTELHLDGNKITKVDAASL--------------------------------KGLNNLAKLGL 223 (330)
T ss_dssp SCCC-SCCSSCC----TTCSEEECTTSCCCEECTGGG--------------------------------TTCTTCCEEEC
T ss_pred Cccc-cCCcccc----ccCCEEECCCCcCCccCHHHh--------------------------------cCCCCCCEEEC
Confidence 7776 3444332 337777777777664433333 34455666888
Q ss_pred cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccC------cCCCCEEEccc
Q 041463 241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMAS------LIFMNHLNLSY 314 (356)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~------l~~L~~L~l~~ 314 (356)
++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.++.+++++
T Consensus 224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeec
Confidence 888887766667777888888888888887 67777788888888888888888665555543 36777888888
Q ss_pred Ccccc
Q 041463 315 NNLSG 319 (356)
Q Consensus 315 n~~~~ 319 (356)
|++..
T Consensus 303 N~~~~ 307 (330)
T 1xku_A 303 NPVQY 307 (330)
T ss_dssp SSSCG
T ss_pred Ccccc
Confidence 88764
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=246.20 Aligned_cols=327 Identities=20% Similarity=0.196 Sum_probs=206.1
Q ss_pred cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463 4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI 82 (356)
Q Consensus 4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 82 (356)
++++|++++|.+++..+..|..+ ++|++|++++|.+++..+..+ ++++|++|++++|.+++. .+..|..+++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~ 103 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQ 103 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTC-SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE----CTTTTTTCTTCC
T ss_pred cccEEEccCCccCccChhHhhCC-CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc----CHhhhcCccccc
Confidence 57888888888887666677776 888888888888887666666 588888888888887642 235677888888
Q ss_pred EEecccccccccccccccCCCCCcEEEcccCccccc-ccccccCCCCCcEEEeeccccccccCccccCCCCC----cEEE
Q 041463 83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS-IPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFM----ESLD 157 (356)
Q Consensus 83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L----~~L~ 157 (356)
+|++++|.+....+..+..+++|++|++++|.+... .|..+.++++|++|++++|.+++..+..+..+++| +.++
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcc
Confidence 888888888755555678888888888888887753 47778888888888888888775555556555555 5666
Q ss_pred ecCCcccccCCchhhc----------------------------------------------------------------
Q 041463 158 LGDNNLSGNIPAWIGA---------------------------------------------------------------- 173 (356)
Q Consensus 158 l~~~~l~~~~~~~~~~---------------------------------------------------------------- 173 (356)
+++|.+.+..+..+..
T Consensus 184 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred cCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 6666554322221110
Q ss_pred ----------------ccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCC--------------------------
Q 041463 174 ----------------SMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSV-------------------------- 211 (356)
Q Consensus 174 ----------------~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~-------------------------- 211 (356)
.+ ..++.|+++++.+. .+|..+..+ .|+.+.....
T Consensus 264 l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EEETTEEESCSTTTTGGG-TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCB
T ss_pred hhcchhhhhhchhhhcCc-CcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccc
Confidence 01 12455555555443 233222222 1111100000
Q ss_pred ------ccCCCeeeeecC----------------------------CccccccccccccEEeecCCcccccCc-hhhhcc
Q 041463 212 ------QHEGRLRVVTKG----------------------------SERKYFTTLYLVNLLDLSSTNLSAEIP-AELTSL 256 (356)
Q Consensus 212 ------~~~~~~~~~~~~----------------------------~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~~~~~ 256 (356)
.....+...... ..+..+..+++|+.|++++|.+.+..+ ..+..+
T Consensus 341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC
Confidence 000000000000 000113445556666666666554333 345666
Q ss_pred cccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCccc-ccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCcc
Q 041463 257 VHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS-GSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPS 334 (356)
Q Consensus 257 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~ 334 (356)
++|++|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|.. ..++.|+.++
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 77777777777776666677777778888888888776 356777777888888888888888776644 6777777777
Q ss_pred ccccC
Q 041463 335 IYEGN 339 (356)
Q Consensus 335 ~~~~~ 339 (356)
+.+|
T Consensus 501 -l~~n 504 (570)
T 2z63_A 501 -MASN 504 (570)
T ss_dssp -CCSS
T ss_pred -CCCC
Confidence 4344
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.9e-30 Score=227.89 Aligned_cols=282 Identities=20% Similarity=0.238 Sum_probs=168.9
Q ss_pred CCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463 29 TLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL 108 (356)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 108 (356)
+++.++++++.++. +|..+ .++|+.|++++|.+.+. .+..+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI-SPDTTLLDLQNNDISEL----RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC-CTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCccc-cCCCC-CCCCeEEECCCCcCCcc----CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 46666666666653 33222 25666666666666531 12455666666666666666665556666666666666
Q ss_pred EcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccc--cCCchhhcccccceeEEEccc
Q 041463 109 DMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSG--NIPAWIGASMPGLLHILDLSH 186 (356)
Q Consensus 109 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~~~L~~L~l~~ 186 (356)
++++|.+. ..|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+.. + .++.|++++
T Consensus 108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l--~L~~L~l~~ 181 (332)
T 2ft3_A 108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-L--KLNYLRISE 181 (332)
T ss_dssp ECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS-C--CCSCCBCCS
T ss_pred ECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC-C--ccCEEECcC
Confidence 66666666 3333222 566666666666664444446666666666666666542 22222222 2 266666666
Q ss_pred CcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccC
Q 041463 187 NDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSH 266 (356)
Q Consensus 187 ~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~ 266 (356)
|.+.+ +|..+. ++|+.+....... .......+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 182 n~l~~-l~~~~~--~~L~~L~l~~n~i--------~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 182 AKLTG-IPKDLP--ETLNELHLDHNKI--------QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp SBCSS-CCSSSC--SSCSCCBCCSSCC--------CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred CCCCc-cCcccc--CCCCEEECCCCcC--------CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 66553 332221 2222211111100 111223455666777788888888876666788888888888888
Q ss_pred CcCcCCCCcCcCCCCCccEEEccCCcccccCCccccC------cCCCCEEEcccCccc--ccCCCC-cccCcCCCcc
Q 041463 267 NHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMAS------LIFMNHLNLSYNNLS--GEIPNT-NQFQTLNDPS 334 (356)
Q Consensus 267 n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~------l~~L~~L~l~~n~~~--~~~~~~-~~l~~l~~~~ 334 (356)
|.+. .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|++. +..|.. ..++.|+.++
T Consensus 251 N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 251 NKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp SCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred CcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence 8887 67777888888888888888888666665554 356788888888887 334433 5566666665
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=252.75 Aligned_cols=312 Identities=21% Similarity=0.175 Sum_probs=179.7
Q ss_pred ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcC-CCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRV-PNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ 80 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 80 (356)
+++++|+|++|.+++..+..|..+ ++|++|++++|.....+ +..+ ++++|++|++++|.+.+. .|..|..+++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~ 98 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL----HPDAFQGLFH 98 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSC-CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE----CTTSSCSCSS
T ss_pred CCcCEEECCCCcCCccChhHCccc-ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc----CHhHccCCcc
Confidence 456777777777766666666665 67777777766443333 4444 467777777777766542 2356666777
Q ss_pred ccEEeccccccccccccc--ccCCCCCcEEEcccCccccccc-ccccCCCCCcEEEeeccccccccCccccCC--CCCcE
Q 041463 81 LITLVISNNNLSGEIPLL--FSNSSFLYILDMSNNSLSGSIP-ESIGSLRTLRFLVLRNNYLSGELPLSLKNC--TFMES 155 (356)
Q Consensus 81 L~~L~l~~~~i~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l--~~L~~ 155 (356)
|++|++++|.+.+..+.. |..+++|++|++++|.+....+ ..+.++++|++|++++|.+++..+..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 777777777666544333 6667777777777776664433 356667777777777777665555555555 66777
Q ss_pred EEecCCcccccCCchhhccc----ccceeEEEcccCcccccCCCCcCCC---CCCcccCCC-------------------
Q 041463 156 LDLGDNNLSGNIPAWIGASM----PGLLHILDLSHNDLSGFIPPRVGNL---SDMKVEPPK------------------- 209 (356)
Q Consensus 156 L~l~~~~l~~~~~~~~~~~~----~~~L~~L~l~~~~l~~~~~~~~~~l---~~L~~~~~~------------------- 209 (356)
|++++|.+.+..+..+.... ...++.|++++|.+.+..+..+... ..+......
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 77777766544443321100 0026777777776554444333221 001100000
Q ss_pred ---CC--ccCCCeeeee---cCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCC
Q 041463 210 ---SV--QHEGRLRVVT---KGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFE 281 (356)
Q Consensus 210 ---~~--~~~~~~~~~~---~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~ 281 (356)
.. .....+.... ....+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..++
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 00 0000000000 011223455666677777777776666666666667777777777776655566666677
Q ss_pred CccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463 282 WLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 282 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
+|++|++++|.+....+..|..+++|++|++++|.+++
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 77777777777665555566667777777777776654
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=241.14 Aligned_cols=301 Identities=21% Similarity=0.209 Sum_probs=225.3
Q ss_pred CcccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463 1 NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ 80 (356)
Q Consensus 1 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 80 (356)
++++|++|++++|.+++..|..|..+ ++|++|++++|.++. ++.. .+++|++|++++|.+++. .+|..+..+++
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~-lp~~-~l~~L~~L~L~~N~l~~~---~~p~~~~~l~~ 116 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFN-QELEYLDLSHNKLVK-ISCH-PTVNLKHLDLSFNAFDAL---PICKEFGNMSQ 116 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTC-TTCCEEECCSSCCCE-EECC-CCCCCSEEECCSSCCSSC---CCCGGGGGCTT
T ss_pred ccccccEEecCCCccCCcChHHhhcc-cCCCEEecCCCceee-cCcc-ccCCccEEeccCCccccc---cchhhhccCCc
Confidence 46899999999999998778888888 899999999999984 5555 899999999999998741 23567888999
Q ss_pred ccEEecccccccccccccccCCCCC--cEEEcccCcc--cccccccccCC------------------------------
Q 041463 81 LITLVISNNNLSGEIPLLFSNSSFL--YILDMSNNSL--SGSIPESIGSL------------------------------ 126 (356)
Q Consensus 81 L~~L~l~~~~i~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~l------------------------------ 126 (356)
|++|++++|.+.+ ..+..+++| ++|++++|.+ ....|..+..+
T Consensus 117 L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 193 (520)
T 2z7x_B 117 LKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193 (520)
T ss_dssp CCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred ceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence 9999999988764 234455555 6666666655 32333222221
Q ss_pred -----------------------------------------------------CCCcEEEeeccccccccCccc------
Q 041463 127 -----------------------------------------------------RTLRFLVLRNNYLSGELPLSL------ 147 (356)
Q Consensus 127 -----------------------------------------------------~~L~~L~l~~~~l~~~~~~~l------ 147 (356)
++|++|++++|.+++.+|..+
T Consensus 194 ~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 273 (520)
T 2z7x_B 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273 (520)
T ss_dssp ECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred eccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccc
Confidence 145555555555544333332
Q ss_pred -----------------------------------------------cCCCCCcEEEecCCcccccCCchhhccccccee
Q 041463 148 -----------------------------------------------KNCTFMESLDLGDNNLSGNIPAWIGASMPGLLH 180 (356)
Q Consensus 148 -----------------------------------------------~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~ 180 (356)
..+++|++|++++|.+.+..+..+.. ++. |+
T Consensus 274 ~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~-L~ 351 (520)
T 2z7x_B 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH-LTE-LE 351 (520)
T ss_dssp CCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCC-CSS-CC
T ss_pred cCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhcc-CCC-CC
Confidence 56788999999999988766766543 444 99
Q ss_pred EEEcccCcccc--cCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccc
Q 041463 181 ILDLSHNDLSG--FIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVH 258 (356)
Q Consensus 181 ~L~l~~~~l~~--~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 258 (356)
.|++++|.+.+ .+|..+..+++|+.+..........+ ....+..+++|+.|++++|.+.+..+..+. ++
T Consensus 352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l-------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~ 422 (520)
T 2z7x_B 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE-------KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR 422 (520)
T ss_dssp EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG-------GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TT
T ss_pred EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc-------ccchhccCccCCEEECcCCCCCcchhhhhc--cc
Confidence 99999999875 44566778888887655544332211 223466788999999999999876665553 79
Q ss_pred cCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCC
Q 041463 259 LGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIP 322 (356)
Q Consensus 259 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 322 (356)
|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+
T Consensus 423 L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999999999999 788888899999999999999995444458899999999999999987544
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.8e-30 Score=226.74 Aligned_cols=282 Identities=24% Similarity=0.312 Sum_probs=226.2
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL 81 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 81 (356)
+++|++|++++|.+++. +. +..+ ++|++|++++|.+++ .+.+..+++|++|++++|.+.+ ++. +..+++|
T Consensus 65 ~~~L~~L~l~~n~i~~~-~~-~~~l-~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~l~~n~i~~-----~~~-~~~l~~L 134 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDI-SP-LSNL-VKLTNLYIGTNKITD-ISALQNLTNLRELYLNEDNISD-----ISP-LANLTKM 134 (347)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTC-TTCCEEECCSSCCCC-CGGGTTCTTCSEEECTTSCCCC-----CGG-GTTCTTC
T ss_pred cCCccEEEccCCccccc-hh-hhcC-CcCCEEEccCCcccC-chHHcCCCcCCEEECcCCcccC-----chh-hccCCce
Confidence 67899999999999854 33 6666 899999999999985 4555579999999999999873 233 7889999
Q ss_pred cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCC
Q 041463 82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN 161 (356)
Q Consensus 82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 161 (356)
++|++++|...... ..+..+++|++|++++|.+....+ +..+++|++|++++|.+.+. +. +..+++|+.+++++|
T Consensus 135 ~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 135 YSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVN 209 (347)
T ss_dssp CEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSS
T ss_pred eEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccC
Confidence 99999999655333 448899999999999999885444 78899999999999999743 33 888999999999999
Q ss_pred cccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeec
Q 041463 162 NLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLS 241 (356)
Q Consensus 162 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 241 (356)
.+.+..+ + ..++. ++.|++++|.+.+..+ +..+++|+.+......... ...+..+++|+.|+++
T Consensus 210 ~l~~~~~--~-~~~~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----------~~~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 210 QITDITP--V-ANMTR-LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD----------INAVKDLTKLKMLNVG 273 (347)
T ss_dssp CCCCCGG--G-GGCTT-CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC----------CGGGTTCTTCCEEECC
T ss_pred CCCCCch--h-hcCCc-CCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC----------ChhHhcCCCcCEEEcc
Confidence 9874333 2 22333 9999999999875433 7777777775554432221 1346788999999999
Q ss_pred CCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463 242 STNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS 318 (356)
Q Consensus 242 ~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 318 (356)
+|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 274 ~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 274 SNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999854 458889999999999999987778889999999999999999996555 888999999999999986
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.2e-29 Score=232.93 Aligned_cols=300 Identities=24% Similarity=0.319 Sum_probs=153.4
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL 81 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 81 (356)
+++|++|++++|.+++..+ +..+ ++|++|++++|.+.+..+ ..++++|++|++++|.+.+ ++ .+..+++|
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-----~~-~~~~l~~L 136 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNL-TKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD-----ID-PLKNLTNL 136 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----CG-GGTTCTTC
T ss_pred hcCCCEEECCCCccCCchh--hhcc-ccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCC-----Ch-HHcCCCCC
Confidence 3455555555555553222 3333 555555555555553333 3345555555555555542 11 14555556
Q ss_pred cEEeccccccccccc-------------------ccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccc
Q 041463 82 ITLVISNNNLSGEIP-------------------LLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGE 142 (356)
Q Consensus 82 ~~L~l~~~~i~~~~~-------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 142 (356)
++|++++|.+.+... ..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.
T Consensus 137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccc
Confidence 666665555542210 0122333334444444433321 1133344444444444444322
Q ss_pred cCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeec
Q 041463 143 LPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTK 222 (356)
Q Consensus 143 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~ 222 (356)
.+ +..+++|+.|++++|.+.+ .+ .+ ..++. |+.|++++|.+.+..+ +..+++|+.+.........
T Consensus 215 ~~--~~~l~~L~~L~l~~n~l~~-~~-~l-~~l~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~------- 279 (466)
T 1o6v_A 215 TP--LGILTNLDELSLNGNQLKD-IG-TL-ASLTN-LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN------- 279 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCC-CG-GG-GGCTT-CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-------
T ss_pred cc--ccccCCCCEEECCCCCccc-ch-hh-hcCCC-CCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-------
Confidence 11 3334444444444444431 11 11 11222 5555555554443221 3444444443322221110
Q ss_pred CCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCcccc
Q 041463 223 GSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMA 302 (356)
Q Consensus 223 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 302 (356)
...+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|++++. ..+.
T Consensus 280 ---~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~ 350 (466)
T 1o6v_A 280 ---ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLA 350 (466)
T ss_dssp ---CGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGT
T ss_pred ---cccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhc
Confidence 0115566777777777777765333 6677778888888887775443 56777888888888877743 3567
Q ss_pred CcCCCCEEEcccCcccccCCCCcccCcCCCccccccC
Q 041463 303 SLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGN 339 (356)
Q Consensus 303 ~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~ 339 (356)
.+++|+.|++++|++++..| ...++.|+.++ +.+|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~-l~~n 385 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTP-LANLTRITQLG-LNDQ 385 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGG-GTTCTTCCEEE-CCCE
T ss_pred cCCCCCEEeCCCCccCccch-hhcCCCCCEEe-ccCC
Confidence 77888888888888877776 67777777766 4444
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4.8e-30 Score=230.29 Aligned_cols=286 Identities=24% Similarity=0.260 Sum_probs=230.7
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ 80 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 80 (356)
+++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ++++|++|++++|.+.. +| +..|..+++
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~---~~~~~~l~~ 142 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LP---RGIFHNTPK 142 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC---TTTTTTCTT
T ss_pred cccCcEEECCCCcccccChhhccCC-CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CC---HHHhcCCCC
Confidence 6889999999999997777778777 899999999999998877776 69999999999999873 22 234688999
Q ss_pred ccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecC
Q 041463 81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGD 160 (356)
Q Consensus 81 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 160 (356)
|++|++++|.+.+..+..+..+++|++|++++|.+... .+..+++|++|++++|.++. +...++|+.|++++
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~ 214 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASH 214 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCS
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCC
Confidence 99999999999977788899999999999999998854 24567899999999998863 23446899999999
Q ss_pred CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463 161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL 240 (356)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 240 (356)
|.+... +... ...++.|++++|.+.+. ..+..+++|+.+........ ...+..+..+++|+.|++
T Consensus 215 n~l~~~-~~~~----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 215 NSINVV-RGPV----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE--------KIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp SCCCEE-ECCC----CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC--------EEESGGGTTCSSCCEEEC
T ss_pred Ceeeec-cccc----cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC--------CcChhHccccccCCEEEC
Confidence 988733 3222 23489999999988643 46667777776554443221 112455778899999999
Q ss_pred cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccccc
Q 041463 241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGE 320 (356)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 320 (356)
++|.+.+ .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++. + +..+++|+.|++++|++.+.
T Consensus 280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 9999985 4555677899999999999998 6777788899999999999999844 3 67789999999999999874
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.1e-29 Score=218.58 Aligned_cols=268 Identities=17% Similarity=0.241 Sum_probs=218.6
Q ss_pred ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL 81 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 81 (356)
+++++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ .+++|++|++++|.++ .+ |..+. ++|
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l----~~~~~--~~L 123 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL----PEKMP--KTL 123 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BC----CSSCC--TTC
T ss_pred CCCeEEECCCCcCCEeChhhhccC-CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-cc----Chhhc--ccc
Confidence 468999999999997766678777 899999999999998777777 6899999999999987 33 33332 799
Q ss_pred cEEecccccccccccccccCCCCCcEEEcccCcccc--cccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEec
Q 041463 82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSG--SIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLG 159 (356)
Q Consensus 82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 159 (356)
++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+. ++|+.|+++
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~ 200 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLD 200 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECT
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECC
Confidence 999999999997777789999999999999999864 56778889999999999999998 4555443 799999999
Q ss_pred CCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEe
Q 041463 160 DNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLD 239 (356)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 239 (356)
+|.+.+..+..+.. ++. |+.|++++|.+.+..+.. +..+++|+.|+
T Consensus 201 ~n~l~~~~~~~~~~-l~~-L~~L~Ls~n~l~~~~~~~--------------------------------~~~l~~L~~L~ 246 (330)
T 1xku_A 201 GNKITKVDAASLKG-LNN-LAKLGLSFNSISAVDNGS--------------------------------LANTPHLRELH 246 (330)
T ss_dssp TSCCCEECTGGGTT-CTT-CCEEECCSSCCCEECTTT--------------------------------GGGSTTCCEEE
T ss_pred CCcCCccCHHHhcC-CCC-CCEEECCCCcCceeChhh--------------------------------ccCCCCCCEEE
Confidence 99998655555543 444 999999999887554433 34556677799
Q ss_pred ecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCC------CCCccEEEccCCcccc--cCCccccCcCCCCEEE
Q 041463 240 LSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGN------FEWLETLDLSKNKLSG--SIPPSMASLIFMNHLN 311 (356)
Q Consensus 240 L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~------~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~ 311 (356)
+++|.+. ..|..+..+++|++|++++|.+++..+..|.. .++++.|++++|++.. ..|..|..++.++.++
T Consensus 247 L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~ 325 (330)
T 1xku_A 247 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325 (330)
T ss_dssp CCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred CCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEE
Confidence 9999998 67778889999999999999999666666643 3789999999999863 5677888899999999
Q ss_pred cccCc
Q 041463 312 LSYNN 316 (356)
Q Consensus 312 l~~n~ 316 (356)
+++|+
T Consensus 326 L~~N~ 330 (330)
T 1xku_A 326 LGNYK 330 (330)
T ss_dssp C----
T ss_pred ecccC
Confidence 99885
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-29 Score=239.09 Aligned_cols=310 Identities=24% Similarity=0.259 Sum_probs=244.0
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ 80 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 80 (356)
+++|++|++++|.+++..+..|..+ ++|++|++++|.+++..+..+ ++++|++|++++|.+++ +| +..|..+++
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~---~~~~~~l~~ 148 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LP---RGIFHNTPK 148 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC---TTTTTTCTT
T ss_pred CCCCcEEECCCCCCCCCChHHhcCC-CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CC---HHHhccCCC
Confidence 6789999999999998777778877 899999999999998887776 69999999999999883 22 234688999
Q ss_pred ccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecC
Q 041463 81 LITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGD 160 (356)
Q Consensus 81 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 160 (356)
|++|++++|.+.+..+..|..+++|++|++++|.+.... +..+++|+.|++++|.+++ +...++|+.|++++
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~ 220 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASH 220 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCS
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccC
Confidence 999999999999888888999999999999999988543 4567899999999998863 24456899999999
Q ss_pred CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463 161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL 240 (356)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 240 (356)
|.+.. .+..+ +..++.|++++|.+.+ +..+..++.|+.+........ ...+..+..+++|+.|+|
T Consensus 221 n~l~~-~~~~~----~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~L 285 (597)
T 3oja_B 221 NSINV-VRGPV----NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE--------KIMYHPFVKMQRLERLYI 285 (597)
T ss_dssp SCCCE-EECSC----CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC--------EEESGGGTTCSSCCEEEC
T ss_pred Ccccc-ccccc----CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC--------CCCHHHhcCccCCCEEEC
Confidence 98863 22222 2348999999998875 356777777777555443221 113456778899999999
Q ss_pred cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccccc
Q 041463 241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGE 320 (356)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 320 (356)
++|.+.+ ++..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++. + +..+++|+.|++++|++.+.
T Consensus 286 s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 286 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 9999985 4566677899999999999998 7888888999999999999999854 3 66789999999999999865
Q ss_pred CCCCcccCcCCCccccccCccccCCC
Q 041463 321 IPNTNQFQTLNDPSIYEGNLALCGDP 346 (356)
Q Consensus 321 ~~~~~~l~~l~~~~~~~~~~~~~~~~ 346 (356)
... ..+..+.... +.++...|+.+
T Consensus 361 ~~~-~~~~~~~~~~-~~~~~~~C~~~ 384 (597)
T 3oja_B 361 SLR-ALFRNVARPA-VDDADQHCKID 384 (597)
T ss_dssp HHH-HHTTTCCTTT-BCCCCCCCCTT
T ss_pred hHH-HHHHHHhhhc-cccccccCCcc
Confidence 321 2333333333 45566667654
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1e-28 Score=226.73 Aligned_cols=295 Identities=25% Similarity=0.317 Sum_probs=186.3
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL 81 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 81 (356)
++++++|++.++.+.. ++. +..+ ++|++|++++|.+++..+ ..++++|++|++++|.+.+ ++. +..+++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~~-~~~l-~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-----~~~-~~~l~~L 114 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-IDG-VEYL-NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD-----ITP-LANLTNL 114 (466)
T ss_dssp HHTCCEEECCSSCCCC-CTT-GGGC-TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----CGG-GTTCTTC
T ss_pred hccccEEecCCCCCcc-Ccc-hhhh-cCCCEEECCCCccCCchh-hhccccCCEEECCCCcccc-----Chh-hcCCCCC
Confidence 4689999999999974 553 6665 899999999999986554 5579999999999999874 233 8889999
Q ss_pred cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCC
Q 041463 82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN 161 (356)
Q Consensus 82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 161 (356)
++|++++|.+.+..+ +..+++|++|++++|.+... + .+..+++|++|.+.+ .+.+. ..+..+++|+.|++++|
T Consensus 115 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSN 187 (466)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCC
Confidence 999999999985543 88999999999999998743 2 355555666665542 22211 12445555555555555
Q ss_pred cccccCCchhhcccccceeEEEcccCcccccCC--------------------CCcCCCCCCcccCCCCCccCCCeeeee
Q 041463 162 NLSGNIPAWIGASMPGLLHILDLSHNDLSGFIP--------------------PRVGNLSDMKVEPPKSVQHEGRLRVVT 221 (356)
Q Consensus 162 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--------------------~~~~~l~~L~~~~~~~~~~~~~~~~~~ 221 (356)
.+.+ .+ .+ ..++. |+.|++++|.+.+..+ ..+..+++|+.+.........
T Consensus 188 ~l~~-~~-~l-~~l~~-L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~------ 257 (466)
T 1o6v_A 188 KVSD-IS-VL-AKLTN-LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN------ 257 (466)
T ss_dssp CCCC-CG-GG-GGCTT-CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC------
T ss_pred cCCC-Ch-hh-ccCCC-CCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc------
Confidence 5432 11 11 11222 5555555554443222 123333333332222211110
Q ss_pred cCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccc
Q 041463 222 KGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM 301 (356)
Q Consensus 222 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 301 (356)
...+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|++++..+ +
T Consensus 258 ----~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~ 327 (466)
T 1o6v_A 258 ----LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V 327 (466)
T ss_dssp ----CGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--G
T ss_pred ----chhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--h
Confidence 0114556667777777776664332 5566777777777777663322 5667777777777777765444 5
Q ss_pred cCcCCCCEEEcccCcccccCCCCcccCcCCCcc
Q 041463 302 ASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPS 334 (356)
Q Consensus 302 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~ 334 (356)
..+++|++|++++|++++. +.+..++.|+.++
T Consensus 328 ~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNKVSDV-SSLANLTNINWLS 359 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEE
T ss_pred ccCccCCEeECCCCccCCc-hhhccCCCCCEEe
Confidence 6677777777777777665 4556666666666
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.3e-29 Score=219.20 Aligned_cols=287 Identities=20% Similarity=0.220 Sum_probs=233.5
Q ss_pred cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463 4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI 82 (356)
Q Consensus 4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 82 (356)
++++++++++.++ .+|..+. +++++|++++|.+++..+..+ ++++|++|++++|.+++. .+..+..+++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI----HEKAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE----CGGGSTTCTTCC
T ss_pred cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc----CHhHhhCcCCCC
Confidence 6899999999997 5666553 789999999999997777666 699999999999998753 357789999999
Q ss_pred EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeecccccc--ccCccccCCCCCcEEEecC
Q 041463 83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSG--ELPLSLKNCTFMESLDLGD 160 (356)
Q Consensus 83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~ 160 (356)
+|++++|.+. .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.++. ..+..+..+ +|+.|++++
T Consensus 106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred EEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 9999999998 4454443 899999999999997777778999999999999999863 556677777 999999999
Q ss_pred CcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463 161 NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL 240 (356)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 240 (356)
|.+. .+|..+. ..++.|++++|.+.+..+..+..+++|+.+........ ......+..+++|+.|++
T Consensus 182 n~l~-~l~~~~~----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 182 AKLT-GIPKDLP----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR--------MIENGSLSFLPTLRELHL 248 (332)
T ss_dssp SBCS-SCCSSSC----SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC--------CCCTTGGGGCTTCCEEEC
T ss_pred CCCC-ccCcccc----CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC--------cCChhHhhCCCCCCEEEC
Confidence 9988 4555443 34999999999998777788888888887655543222 123345778999999999
Q ss_pred cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCC------CCCccEEEccCCccc--ccCCccccCcCCCCEEEc
Q 041463 241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGN------FEWLETLDLSKNKLS--GSIPPSMASLIFMNHLNL 312 (356)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~------~~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~l 312 (356)
++|.+. .+|..+..+++|++|++++|.+++..+..|.. .++|+.|++++|++. +..+..|..+++|+.+++
T Consensus 249 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp CSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred CCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 999998 67778999999999999999999666666654 467999999999987 567788999999999999
Q ss_pred ccCc
Q 041463 313 SYNN 316 (356)
Q Consensus 313 ~~n~ 316 (356)
++|+
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 9885
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=6.8e-29 Score=226.21 Aligned_cols=252 Identities=24% Similarity=0.272 Sum_probs=167.2
Q ss_pred CCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcE
Q 041463 52 FPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRF 131 (356)
Q Consensus 52 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 131 (356)
..+.++.++..++ .+|..+. ++++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++
T Consensus 44 ~~~~v~c~~~~l~-----~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 44 QFSKVICVRKNLR-----EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp TSCEEECCSCCCS-----SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred CCCEEEeCCCCcC-----cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence 3456666666665 2333332 56777777777777666667777777777777777777666667777777777
Q ss_pred EEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCC
Q 041463 132 LVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSV 211 (356)
Q Consensus 132 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~ 211 (356)
|++++|.++...+..+..+++|+.|++++|.+. .++......++. |+.|+++++...+.++.
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~-L~~L~l~~~~~l~~i~~---------------- 178 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPS-LRRLDLGELKRLSYISE---------------- 178 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTT-CCEEECCCCTTCCEECT----------------
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcc-cCEeCCCCCCCcceeCc----------------
Confidence 777777777544456777777777777777776 333333333443 77777776432212111
Q ss_pred ccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCC
Q 041463 212 QHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKN 291 (356)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n 291 (356)
..+..+++|+.|++++|.+.. .| .+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 179 ---------------~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 179 ---------------GAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp ---------------TTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ---------------chhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 123445556667888877763 33 3666777888888888877666777777888888888888
Q ss_pred cccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCccccccCccccCCCCCCCCC
Q 041463 292 KLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCP 352 (356)
Q Consensus 292 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~ 352 (356)
++++..+..|.++++|++|+|++|++++.++.. ..++.|+.++ +.+|||.|||+
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-------L~~Np~~CdC~ 296 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH-------LHHNPWNCNCD 296 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE-------CCSSCEECSST
T ss_pred ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE-------cCCCCccCCCC
Confidence 887777777777888888888888887666655 4555555443 45677888885
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=7.7e-29 Score=226.66 Aligned_cols=252 Identities=23% Similarity=0.273 Sum_probs=174.4
Q ss_pred CcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEE
Q 041463 53 PATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFL 132 (356)
Q Consensus 53 L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 132 (356)
...++.++..++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|
T Consensus 56 ~~~v~c~~~~l~-----~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 56 FSKVVCTRRGLS-----EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp SCEEECCSSCCS-----SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CcEEEECCCCcC-----ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence 456777766665 2333332 577788888888776667777788888888888888776666777778888888
Q ss_pred EeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCc
Q 041463 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQ 212 (356)
Q Consensus 133 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~ 212 (356)
++++|.++...+..+..+++|+.|++++|.+. .++......++. |+.|+++++...+.++.
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~-L~~L~l~~~~~l~~i~~----------------- 189 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPS-LMRLDLGELKKLEYISE----------------- 189 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTT-CCEEECCCCTTCCEECT-----------------
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCc-ccEEeCCCCCCccccCh-----------------
Confidence 88888877555555777788888888888776 344333333444 77888776432212111
Q ss_pred cCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCc
Q 041463 213 HEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNK 292 (356)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~ 292 (356)
..+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+.+..+..|..+++|++|++++|+
T Consensus 190 --------------~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 190 --------------GAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp --------------TTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred --------------hhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 1234455666788888887743 3 36667788888888888876667778888888888888888
Q ss_pred ccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCccccccCccccCCCCCCCCCC
Q 041463 293 LSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCPE 353 (356)
Q Consensus 293 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~~ 353 (356)
+++..+..|.++++|+.|+|++|++++.++.. ..++.|+.++ +.+|||.|||+-
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-------L~~Np~~CdC~~ 308 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH-------LHHNPWNCDCDI 308 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE-------CCSSCEECSTTT
T ss_pred CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE-------ccCCCcCCCCCc
Confidence 88777777888888888888888888766655 4555555443 456788888863
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-28 Score=214.27 Aligned_cols=275 Identities=23% Similarity=0.277 Sum_probs=208.5
Q ss_pred CcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccc--ccccccCCCCCcE
Q 041463 30 LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE--IPLLFSNSSFLYI 107 (356)
Q Consensus 30 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~ 107 (356)
-+.++..++.++. +|..+ .++|++|++++|.++. +| +..|..+++|++|++++|.+... .+..+..+++|++
T Consensus 9 ~~~l~c~~~~l~~-ip~~~-~~~l~~L~L~~n~l~~-i~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 9 GTEIRCNSKGLTS-VPTGI-PSSATRLELESNKLQS-LP---HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp TTEEECCSSCCSS-CCSCC-CTTCCEEECCSSCCCC-CC---TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred CCEEEcCCCCccc-CCCCC-CCCCCEEECCCCccCc-cC---HhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 4578888888774 34322 3689999999998873 22 23478899999999999988733 2566778899999
Q ss_pred EEcccCcccccccccccCCCCCcEEEeeccccccccC-ccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEccc
Q 041463 108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELP-LSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSH 186 (356)
Q Consensus 108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 186 (356)
|++++|.+. ..+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..+.. ++. ++.|++++
T Consensus 83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~-L~~L~l~~ 159 (306)
T 2z66_A 83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSS-LEVLKMAG 159 (306)
T ss_dssp EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-CTT-CCEEECTT
T ss_pred EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-CcC-CCEEECCC
Confidence 999999988 456668889999999999999985444 57888999999999999887555554433 343 99999999
Q ss_pred Ccccc-cCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEcc
Q 041463 187 NDLSG-FIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLS 265 (356)
Q Consensus 187 ~~l~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~ 265 (356)
|.+.+ ..|..+ ..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 160 n~l~~~~~~~~~--------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 160 NSFQENFLPDIF--------------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CEEGGGEECSCC--------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CccccccchhHH--------------------------------hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 98764 334333 345567779999999998778888899999999999
Q ss_pred CCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcC-CCCEEEcccCcccccCCCC---cccCcCCCccccccCcc
Q 041463 266 HNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLI-FMNHLNLSYNNLSGEIPNT---NQFQTLNDPSIYEGNLA 341 (356)
Q Consensus 266 ~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~---~~l~~l~~~~~~~~~~~ 341 (356)
+|.+++..+..+..+++|++|++++|++++..+..+..++ +|++|++++|++.+..+.. ..+...+... ...+..
T Consensus 208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~-~~~~~~ 286 (306)
T 2z66_A 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL-VEVERM 286 (306)
T ss_dssp TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGB-SCGGGC
T ss_pred CCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhh-cccccc
Confidence 9999866666788899999999999999988888888885 8999999999998653321 3343444333 333445
Q ss_pred ccCCC
Q 041463 342 LCGDP 346 (356)
Q Consensus 342 ~~~~~ 346 (356)
.|..|
T Consensus 287 ~C~~p 291 (306)
T 2z66_A 287 ECATP 291 (306)
T ss_dssp BEEES
T ss_pred ccCCc
Confidence 55444
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=5.7e-29 Score=233.26 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=133.1
Q ss_pred cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463 4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI 82 (356)
Q Consensus 4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 82 (356)
...+.+.+++.++ .+|..+. ++|++|++++|.+++..+..+ ++++|++|++++|.+.+. .+..|..+++|+
T Consensus 6 ~~~~c~~~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~ 77 (549)
T 2z81_A 6 ASGVCDGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI----EGDAFYSLGSLE 77 (549)
T ss_dssp TTSEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE----CTTTTTTCTTCC
T ss_pred CCceEECCCCccc-cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc----ChhhccccccCC
Confidence 3345677788887 5666553 689999999999998777666 699999999999999853 236788999999
Q ss_pred EEecccccccccccccccCCCCCcEEEcccCccccc-ccccccCCCCCcEEEeeccccccccC-ccccCCCCCcEEEecC
Q 041463 83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGS-IPESIGSLRTLRFLVLRNNYLSGELP-LSLKNCTFMESLDLGD 160 (356)
Q Consensus 83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~ 160 (356)
+|++++|.+.+..+..|..+++|++|++++|.+... .+..+..+++|++|++++|.+.+.++ ..+..+++|+.|++++
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 999999999977777799999999999999999853 45678999999999999998443444 6789999999999999
Q ss_pred CcccccCCchhh
Q 041463 161 NNLSGNIPAWIG 172 (356)
Q Consensus 161 ~~l~~~~~~~~~ 172 (356)
|.+.+..+..+.
T Consensus 158 n~l~~~~~~~l~ 169 (549)
T 2z81_A 158 LSLRNYQSQSLK 169 (549)
T ss_dssp TTCCEECTTTTT
T ss_pred CcccccChhhhh
Confidence 998866665543
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=9.9e-28 Score=228.61 Aligned_cols=307 Identities=23% Similarity=0.209 Sum_probs=209.6
Q ss_pred CcccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcc
Q 041463 1 NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLK 79 (356)
Q Consensus 1 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 79 (356)
++++|++|+|++|.|++..+.+|.++ ++|++|+|++|.+++..+..+ ++++|++|++++|.+++. .+..|..++
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l----~~~~~~~L~ 148 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL----ENFPIGHLK 148 (635)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCS----TTCCCTTCT
T ss_pred CCCCCCEEECCCCcCCCcChhHhcCC-CCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCC----ChhhhhcCc
Confidence 47889999999999987666677777 899999999999987666666 589999999999988742 224578888
Q ss_pred cccEEeccccccccc-ccccccCCCCCcEEEcccCcccccccccc-----------------------------------
Q 041463 80 QLITLVISNNNLSGE-IPLLFSNSSFLYILDMSNNSLSGSIPESI----------------------------------- 123 (356)
Q Consensus 80 ~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----------------------------------- 123 (356)
+|++|++++|.+... .|..+..+++|++|++++|.+....+..+
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~ 228 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 228 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhh
Confidence 999999999888653 46777888888888888876542111110
Q ss_pred --------------------------------------------------------------------------------
Q 041463 124 -------------------------------------------------------------------------------- 123 (356)
Q Consensus 124 -------------------------------------------------------------------------------- 123 (356)
T Consensus 229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence
Q ss_pred ----------------cCCCCCcEEEeecccccc---------------------------------------------c
Q 041463 124 ----------------GSLRTLRFLVLRNNYLSG---------------------------------------------E 142 (356)
Q Consensus 124 ----------------~~l~~L~~L~l~~~~l~~---------------------------------------------~ 142 (356)
.....++.|.+.++.+.. .
T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred ccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccc
Confidence 001122333333322210 0
Q ss_pred cCccccCCCCCcEEEecCCcccc-----------------------cCCchhhcccccceeEEEcccCcccccCCCCcCC
Q 041463 143 LPLSLKNCTFMESLDLGDNNLSG-----------------------NIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGN 199 (356)
Q Consensus 143 ~~~~l~~l~~L~~L~l~~~~l~~-----------------------~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 199 (356)
.+..+..+.+|+.+++..+.... ..+......+.. ++.++++.|.+....+..+..
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~-l~~l~ls~n~l~~~~~~~~~~ 467 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAFNGIFNG 467 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT-CCEEECTTSCCEECCTTTTTT
T ss_pred cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccc-ccccccccccccccccccccc
Confidence 11112233455566665554331 111111121222 455555555554444444444
Q ss_pred CCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCC
Q 041463 200 LSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGN 279 (356)
Q Consensus 200 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 279 (356)
++.++.+........ ....+..+..+++|+.|+|++|.+.+..|..|.++++|++|+|++|.+++..+..|..
T Consensus 468 ~~~L~~L~Ls~N~~~-------~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~ 540 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQ-------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 540 (635)
T ss_dssp CTTCCEEECTTCEEG-------GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTT
T ss_pred chhhhhhhhhhcccc-------cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhC
Confidence 444444322221111 1123456788899999999999999888999999999999999999999777888999
Q ss_pred CCCccEEEccCCcccccCCccccCc-CCCCEEEcccCccccc
Q 041463 280 FEWLETLDLSKNKLSGSIPPSMASL-IFMNHLNLSYNNLSGE 320 (356)
Q Consensus 280 ~~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~l~~n~~~~~ 320 (356)
+++|++|++++|++++..|..+..+ ++|+.|++++|++...
T Consensus 541 l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 541 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999999999999998889999988 6899999999999864
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.5e-28 Score=216.17 Aligned_cols=275 Identities=18% Similarity=0.173 Sum_probs=142.6
Q ss_pred EEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEec
Q 041463 8 LVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVI 86 (356)
Q Consensus 8 L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l 86 (356)
.+++++.++ .+|..+. ++|++|++++|.+++..+..+ ++++|++|++++|.+++. .+..|..+++|++|++
T Consensus 36 c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 36 CKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI----EEDSFSSLGSLEHLDL 107 (353)
T ss_dssp EECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEEC
T ss_pred eeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc----CHhhcCCCCCCCEEEC
Confidence 444444444 2343322 355555555555554433333 355555555555555431 1234455555555555
Q ss_pred ccccccccccccccCCCCCcEEEcccCccccccc-ccccCCCCCcEEEeecc-ccccccCccccCCCCCcEEEecCCccc
Q 041463 87 SNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP-ESIGSLRTLRFLVLRNN-YLSGELPLSLKNCTFMESLDLGDNNLS 164 (356)
Q Consensus 87 ~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~~l~ 164 (356)
++|.+++..+..+..+++|++|++++|.+..... ..+..+++|++|++++| .+....+..+..+++|+.|++++|.+.
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 5555553333335555555555555555553322 24455555555555555 244333444555555555555555554
Q ss_pred ccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCc
Q 041463 165 GNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTN 244 (356)
Q Consensus 165 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 244 (356)
+..+..+.. ++. ++.|++++|.+... ....+..+++|+.|++++|.
T Consensus 188 ~~~~~~l~~-l~~-L~~L~l~~n~l~~~--------------------------------~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 188 SYEPKSLKS-IQN-VSHLILHMKQHILL--------------------------------LEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EECTTTTTT-CSE-EEEEEEECSCSTTH--------------------------------HHHHHHHTTTEEEEEEESCB
T ss_pred ccCHHHHhc-ccc-CCeecCCCCccccc--------------------------------hhhhhhhcccccEEECCCCc
Confidence 333333322 222 55555555543211 01122345566667777777
Q ss_pred ccccCchhh---hcccccCeEEccCCcCcC----CCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcc
Q 041463 245 LSAEIPAEL---TSLVHLGTLNLSHNHLVG----KIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL 317 (356)
Q Consensus 245 l~~~~~~~~---~~~~~L~~L~L~~n~i~~----~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 317 (356)
+.+..+..+ .....++.++++++.+.+ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++
T Consensus 234 l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 665433222 223456666666666553 2455566677777777777777743334456777777777777777
Q ss_pred cccCCCC
Q 041463 318 SGEIPNT 324 (356)
Q Consensus 318 ~~~~~~~ 324 (356)
.+..|.+
T Consensus 314 ~~~~~~l 320 (353)
T 2z80_A 314 DCSCPRI 320 (353)
T ss_dssp CCCHHHH
T ss_pred cCcCCCc
Confidence 7665544
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.5e-28 Score=216.18 Aligned_cols=278 Identities=18% Similarity=0.174 Sum_probs=213.8
Q ss_pred cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463 28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 107 (356)
+.....+.+++.++. +|..+ .++|++|++++|.+++. + +..+..+++|++|++++|.+.+..+..|..+++|++
T Consensus 31 ~~~~~c~~~~~~l~~-iP~~~-~~~L~~L~l~~n~i~~~-~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 31 DRNGICKGSSGSLNS-IPSGL-TEAVKSLDLSNNRITYI-S---NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CTTSEEECCSTTCSS-CCTTC-CTTCCEEECTTSCCCEE-C---TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCeEeeCCCCCccc-ccccc-cccCcEEECCCCcCccc-C---HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 666778888888884 44433 25899999999998742 2 246888999999999999998777788999999999
Q ss_pred EEcccCcccccccccccCCCCCcEEEeeccccccccC-ccccCCCCCcEEEecCCc-ccccCCchhhcccccceeEEEcc
Q 041463 108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELP-LSLKNCTFMESLDLGDNN-LSGNIPAWIGASMPGLLHILDLS 185 (356)
Q Consensus 108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~L~~L~l~ 185 (356)
|++++|.+....+..+..+++|++|++++|.++.... ..+..+++|+.|++++|. +.+..+..+. .++. ++.|+++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~-L~~L~l~ 182 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTF-LEELEID 182 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCE-EEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCC-CCEEECC
Confidence 9999999996666668899999999999999984333 368899999999999984 5533334443 3444 9999999
Q ss_pred cCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEcc
Q 041463 186 HNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLS 265 (356)
Q Consensus 186 ~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~ 265 (356)
+|.+.+..+..+. .+++|+.|++++|.+.......+..+++|++|+++
T Consensus 183 ~n~l~~~~~~~l~--------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 183 ASDLQSYEPKSLK--------------------------------SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp ETTCCEECTTTTT--------------------------------TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred CCCcCccCHHHHh--------------------------------ccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence 9988765555444 44556779999999875444456668999999999
Q ss_pred CCcCcCCCCcCc---CCCCCccEEEccCCcccc----cCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCccccc
Q 041463 266 HNHLVGKIPEEI---GNFEWLETLDLSKNKLSG----SIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIYE 337 (356)
Q Consensus 266 ~n~i~~~~~~~~---~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~ 337 (356)
+|.+++..+..+ ...+.++.++++++.+.+ .+|..+..+++|++|++++|+++..++.. ..++.|+.++
T Consensus 231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~--- 307 (353)
T 2z80_A 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW--- 307 (353)
T ss_dssp SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE---
T ss_pred CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEE---
Confidence 999986544443 346778899999988875 35677888999999999999999666654 6777777665
Q ss_pred cCccccCCCCCCCCC
Q 041463 338 GNLALCGDPLPKKCP 352 (356)
Q Consensus 338 ~~~~~~~~~~~~~c~ 352 (356)
+.+|||.|+|+
T Consensus 308 ----L~~N~~~~~~~ 318 (353)
T 2z80_A 308 ----LHTNPWDCSCP 318 (353)
T ss_dssp ----CCSSCBCCCHH
T ss_pred ----eeCCCccCcCC
Confidence 45678888885
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=8.6e-28 Score=208.52 Aligned_cols=278 Identities=19% Similarity=0.229 Sum_probs=207.7
Q ss_pred eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEE
Q 041463 6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITL 84 (356)
Q Consensus 6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 84 (356)
+.++.+++.++ .+|..+. +++++|++++|.++...+..+ ++++|++|++++|.+.... ..+..+..+++|++|
T Consensus 10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG--CCSQSDFGTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE--EEEHHHHSCSCCCEE
T ss_pred CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc--CcccccccccccCEE
Confidence 46778888887 4565443 689999999999886555555 6899999999999876311 113455568899999
Q ss_pred ecccccccccccccccCCCCCcEEEcccCccccccc-ccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463 85 VISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP-ESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL 163 (356)
Q Consensus 85 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 163 (356)
++++|.+. ..+..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 84 ~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 84 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp ECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 99999887 456668889999999999998885554 5678889999999999998877777888889999999999988
Q ss_pred cc-cCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecC
Q 041463 164 SG-NIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSS 242 (356)
Q Consensus 164 ~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 242 (356)
.+ ..+..+.. ++. |+.|++++|.+.+..+..+. .+++|+.|++++
T Consensus 163 ~~~~~~~~~~~-l~~-L~~L~Ls~n~l~~~~~~~~~--------------------------------~l~~L~~L~L~~ 208 (306)
T 2z66_A 163 QENFLPDIFTE-LRN-LTFLDLSQCQLEQLSPTAFN--------------------------------SLSSLQVLNMSH 208 (306)
T ss_dssp GGGEECSCCTT-CTT-CCEEECTTSCCCEECTTTTT--------------------------------TCTTCCEEECTT
T ss_pred ccccchhHHhh-CcC-CCEEECCCCCcCCcCHHHhc--------------------------------CCCCCCEEECCC
Confidence 75 34544433 333 89999999988765454443 344566699999
Q ss_pred CcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCC-CccEEEccCCcccccC--CccccCcCCCCEEEcccCcccc
Q 041463 243 TNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFE-WLETLDLSKNKLSGSI--PPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 243 ~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~-~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
|.+.+..+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|+++... ......+...+.+.+..+.+..
T Consensus 209 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C 288 (306)
T 2z66_A 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC 288 (306)
T ss_dssp SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBE
T ss_pred CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccccccc
Confidence 999877777788889999999999999877888888884 8999999999887432 1122334455556666667776
Q ss_pred cCCCC
Q 041463 320 EIPNT 324 (356)
Q Consensus 320 ~~~~~ 324 (356)
..|..
T Consensus 289 ~~p~~ 293 (306)
T 2z66_A 289 ATPSD 293 (306)
T ss_dssp EESGG
T ss_pred CCchh
Confidence 65554
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=3.3e-27 Score=215.28 Aligned_cols=276 Identities=16% Similarity=0.142 Sum_probs=174.5
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL 81 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 81 (356)
+++|++|++++|.+++. | .+..+ ++|++|++++|.+++. + +..+++|++|++++|.+++ + .+..+++|
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l-~~L~~L~Ls~n~l~~~-~-~~~l~~L~~L~Ls~N~l~~-----~--~~~~l~~L 108 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKL-TGLTKLICTSNNITTL-D-LSQNTNLTYLACDSNKLTN-----L--DVTPLTKL 108 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGC-TTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSC-----C--CCTTCTTC
T ss_pred cCCCCEEEccCCCcccC-h-hhccc-CCCCEEEccCCcCCeE-c-cccCCCCCEEECcCCCCce-----e--ecCCCCcC
Confidence 57899999999999864 5 56666 8999999999998864 2 4468899999999998874 2 26778889
Q ss_pred cEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCC
Q 041463 82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDN 161 (356)
Q Consensus 82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 161 (356)
++|++++|.+.+. + +..+++|++|++++|.+... .+..+++|++|++++|...+.+ .+..+++|+.|++++|
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 9999999988753 3 77888888888888888753 2566777777777777443233 3556667777777777
Q ss_pred cccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeec
Q 041463 162 NLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLS 241 (356)
Q Consensus 162 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 241 (356)
.+.+ ++ + ..++. ++.|++++|.+.+. .+..+++|+.+........+ + .+..+++|+.|+++
T Consensus 181 ~l~~-l~--l-~~l~~-L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-i----------p~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 181 KITE-LD--V-SQNKL-LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-I----------DVTPLTQLTYFDCS 241 (457)
T ss_dssp CCCC-CC--C-TTCTT-CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-C----------CCTTCTTCSEEECC
T ss_pred ccce-ec--c-ccCCC-CCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-c----------CccccCCCCEEEee
Confidence 6653 33 1 11222 66666666665533 24444444443333222111 0 02334444444444
Q ss_pred CCcccccCchh-----------------------------hhcccccCeEEccCCcCcCCCCc--------CcCCCCCcc
Q 041463 242 STNLSAEIPAE-----------------------------LTSLVHLGTLNLSHNHLVGKIPE--------EIGNFEWLE 284 (356)
Q Consensus 242 ~~~l~~~~~~~-----------------------------~~~~~~L~~L~L~~n~i~~~~~~--------~~~~~~~L~ 284 (356)
+|.+.+..+.. +..+++|++|++++|...+.+|. .++.+++|+
T Consensus 242 ~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 242 VNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLV 321 (457)
T ss_dssp SSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred CCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCC
Confidence 44444322211 23345566666666653322221 245567777
Q ss_pred EEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463 285 TLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 285 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
+|++++|++++. + +..+++|+.|++++|++++
T Consensus 322 ~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 322 YLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp EEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred EEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 777777777753 2 6677777777777777775
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=6.9e-27 Score=213.70 Aligned_cols=250 Identities=20% Similarity=0.217 Sum_probs=206.6
Q ss_pred CCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463 29 TLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL 108 (356)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 108 (356)
..+.++..+..++. +|..+ .+++++|++++|.+.+. .+..|..+++|++|++++|.+.+..+..|..+++|++|
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~-~~~l~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGI-PSNTRYLNLMENNIQMI----QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCC-CTTCSEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcEEEECCCCcCc-cCCCC-CCCccEEECcCCcCceE----CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence 35677777777763 34332 36899999999998753 24678889999999999999987777889999999999
Q ss_pred EcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCc
Q 041463 109 DMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHND 188 (356)
Q Consensus 109 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 188 (356)
++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|...+.++......++. |+.|++++|.
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L~~L~L~~n~ 207 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN-LKYLNLGMCN 207 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT-CCEEECTTSC
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC-CCEEECCCCc
Confidence 999999997777778899999999999999986666678899999999999865433555544444554 9999999998
Q ss_pred ccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCc
Q 041463 189 LSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH 268 (356)
Q Consensus 189 l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~ 268 (356)
+.+. + . +..+++|+.|++++|.+.+..+..|..+++|++|++++|.
T Consensus 208 l~~~-~-~--------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 208 IKDM-P-N--------------------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp CSSC-C-C--------------------------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred cccc-c-c--------------------------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 7632 2 1 2345678889999999998888999999999999999999
Q ss_pred CcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463 269 LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 269 i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
+.+..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++..
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 998888899999999999999999997778888999999999999999764
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=8.5e-27 Score=212.35 Aligned_cols=250 Identities=23% Similarity=0.265 Sum_probs=206.1
Q ss_pred CCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463 29 TLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL 108 (356)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 108 (356)
..+.++..+..++. +|..+ .++++.|++++|.+.... +..|..+++|++|++++|.+....+..|..+++|++|
T Consensus 44 ~~~~v~c~~~~l~~-iP~~~-~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-VPDGI-STNTRLLNLHENQIQIIK----VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp TSCEEECCSCCCSS-CCSCC-CTTCSEEECCSCCCCEEC----TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred CCCEEEeCCCCcCc-CCCCC-CCCCcEEEccCCcCCeeC----HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence 45677777777773 44333 378999999999887532 3678889999999999999987777889999999999
Q ss_pred EcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCc
Q 041463 109 DMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHND 188 (356)
Q Consensus 109 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 188 (356)
++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|...+.++......++. |+.|++++|.
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L~~L~L~~n~ 196 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN-LRYLNLAMCN 196 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS-CCEEECTTSC
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc-cCeecCCCCc
Confidence 999999997777788999999999999999986666788899999999999865443555544444554 9999999998
Q ss_pred ccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCc
Q 041463 189 LSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH 268 (356)
Q Consensus 189 l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~ 268 (356)
+.. +| . +..+++|+.|++++|.+.+..+..|..+++|++|++++|.
T Consensus 197 l~~-~~-~--------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 197 LRE-IP-N--------------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp CSS-CC-C--------------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred Ccc-cc-c--------------------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence 762 22 1 2345668889999999998888899999999999999999
Q ss_pred CcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463 269 LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 269 i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
+.+..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++..
T Consensus 243 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 998888899999999999999999997788888999999999999999864
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.1e-27 Score=205.18 Aligned_cols=224 Identities=25% Similarity=0.264 Sum_probs=141.9
Q ss_pred CCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCc
Q 041463 51 NFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLR 130 (356)
Q Consensus 51 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 130 (356)
..++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. ..|..+..+++|+
T Consensus 81 ~~l~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSVPLP-----QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153 (328)
T ss_dssp TTCCEEEEESSCCS-----SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred cceeEEEccCCCch-----hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence 56666666666665 23445555666666666666666 55666666666777777666666 4555666666677
Q ss_pred EEEeeccccccccCccccC---------CCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCC
Q 041463 131 FLVLRNNYLSGELPLSLKN---------CTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLS 201 (356)
Q Consensus 131 ~L~l~~~~l~~~~~~~l~~---------l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~ 201 (356)
+|++++|.+.+.+|..+.. +++|+.|++++|.+. .+|..+.. ++. |+.|++++|.+.+ ++..
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~-L~~L~L~~N~l~~-l~~~----- 224 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQN-LKSLKIRNSPLSA-LGPA----- 224 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-CTT-CCEEEEESSCCCC-CCGG-----
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-CCC-CCEEEccCCCCCc-Cchh-----
Confidence 7777666555555554433 666666666666665 55544332 222 6666666665542 2222
Q ss_pred CCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCC
Q 041463 202 DMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFE 281 (356)
Q Consensus 202 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~ 281 (356)
+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..++
T Consensus 225 ---------------------------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 225 ---------------------------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp ---------------------------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred ---------------------------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 23344555577777766666666677777777777777776666777777777
Q ss_pred CccEEEccCCcccccCCccccCcCCCCEEEcccCcc
Q 041463 282 WLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL 317 (356)
Q Consensus 282 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 317 (356)
+|++|++++|.+.+.+|..+.++++|+.+++..+.+
T Consensus 278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 777777777777767777777777777777765544
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.3e-27 Score=203.62 Aligned_cols=225 Identities=23% Similarity=0.186 Sum_probs=110.8
Q ss_pred cEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEc
Q 041463 31 DELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDM 110 (356)
Q Consensus 31 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 110 (356)
++++..++.++.. |.. ..++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 14 ~~~~c~~~~l~~i-p~~-~~~~l~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVG-IPAASQRIFLHGNRISHV----PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSSC-CTT-CCTTCSEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCcccC-CcC-CCCCceEEEeeCCcCCcc----CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 3455555555422 221 134555566655555431 1134455555555555555555444555555555555555
Q ss_pred ccCc-ccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcc
Q 041463 111 SNNS-LSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDL 189 (356)
Q Consensus 111 ~~~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l 189 (356)
++|. +....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+..
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~------------------- 147 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDD------------------- 147 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTT-------------------
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-cCHh-------------------
Confidence 5554 443444455555555555555555554444445555555555555555442 2211
Q ss_pred cccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcC
Q 041463 190 SGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHL 269 (356)
Q Consensus 190 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i 269 (356)
.+ ..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 148 ------~~--------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 148 ------TF--------------------------------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ------TT--------------------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ------Hh--------------------------------ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 11 2223333455555555443333444555555555555555
Q ss_pred cCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463 270 VGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 270 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
.+..|..+..+++|++|++++|++++..+..+..+++|++|++++|++..
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 54445555555555555555555554333445555555555555555543
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.8e-27 Score=201.15 Aligned_cols=151 Identities=19% Similarity=0.141 Sum_probs=129.9
Q ss_pred eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEE
Q 041463 6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITL 84 (356)
Q Consensus 6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 84 (356)
++++.+++.++ .+|..+. +++++|++++|.+++..+..+ .+++|++|++++|.+++. .+..+..+++|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI----DAAAFTGLALLEQL 85 (285)
T ss_dssp CEEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEE
T ss_pred eEEEcCcCCcc-cCCcCCC---CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee----CHhhcCCccCCCEE
Confidence 57888888887 4565442 789999999999997776666 689999999999998753 24678889999999
Q ss_pred eccccc-ccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463 85 VISNNN-LSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL 163 (356)
Q Consensus 85 ~l~~~~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 163 (356)
++++|. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence 999997 7766688899999999999999999977788899999999999999999866666688899999999999887
Q ss_pred c
Q 041463 164 S 164 (356)
Q Consensus 164 ~ 164 (356)
.
T Consensus 166 ~ 166 (285)
T 1ozn_A 166 S 166 (285)
T ss_dssp C
T ss_pred c
Confidence 6
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.5e-26 Score=199.88 Aligned_cols=225 Identities=20% Similarity=0.236 Sum_probs=189.0
Q ss_pred cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463 28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 107 (356)
+++++|++++|.++...+....+++|++|++++|.+. . +|..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~----lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-E----LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-C----CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-c----hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 6899999999998844444446899999999999887 3 4567888999999999999988 67888999999999
Q ss_pred EEcccCcccccccccccC---------CCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccc
Q 041463 108 LDMSNNSLSGSIPESIGS---------LRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGL 178 (356)
Q Consensus 108 L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 178 (356)
|++++|.+.+..|..+.. +++|++|++++|.++ .+|..+..+++|+.|++++|.+. .++..+.. ++.
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~-l~~- 230 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH-LPK- 230 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG-CTT-
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc-CCC-
Confidence 999998777677766543 899999999999998 78888999999999999999998 46655443 444
Q ss_pred eeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccc
Q 041463 179 LHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVH 258 (356)
Q Consensus 179 L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 258 (356)
|+.|++++|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~--------------------------------l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGG--------------------------------RAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTC--------------------------------CCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred CCEEECcCCcchhhhHHHhcC--------------------------------CCCCCEEECCCCCchhhcchhhhcCCC
Confidence 999999999887666655544 445666999999988889999999999
Q ss_pred cCeEEccCCcCcCCCCcCcCCCCCccEEEccCCccc
Q 041463 259 LGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294 (356)
Q Consensus 259 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~ 294 (356)
|++|++++|.+.+.+|..++.+++|+.+++..+.+.
T Consensus 279 L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 999999999998899999999999999999987665
No 56
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.2e-25 Score=204.96 Aligned_cols=281 Identities=17% Similarity=0.158 Sum_probs=172.2
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQL 81 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 81 (356)
+++|++|++++|.+++. + +..+ ++|++|++++|.+++. +..++++|++|++++|.+++ ++ +..+++|
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l-~~L~~L~Ls~N~l~~~--~~~~l~~L~~L~L~~N~l~~-----l~--~~~l~~L 129 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQN-TNLTYLACDSNKLTNL--DVTPLTKLTYLNCDTNKLTK-----LD--VSQNPLL 129 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTC-TTCSEEECCSSCCSCC--CCTTCTTCCEEECCSSCCSC-----CC--CTTCTTC
T ss_pred cCCCCEEEccCCcCCeE-c--cccC-CCCCEEECcCCCCcee--ecCCCCcCCEEECCCCcCCe-----ec--CCCCCcC
Confidence 56788888888888753 3 5555 7788888888877754 24457788888888877763 22 5666777
Q ss_pred cEEecccccccccccccccCCCCCcEEEcccC----------------------cccccccccccCCCCCcEEEeecccc
Q 041463 82 ITLVISNNNLSGEIPLLFSNSSFLYILDMSNN----------------------SLSGSIPESIGSLRTLRFLVLRNNYL 139 (356)
Q Consensus 82 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~----------------------~~~~~~~~~~~~l~~L~~L~l~~~~l 139 (356)
++|++++|.+++. + +..+++|++|++++| .+.. .+ +..+++|++|++++|.+
T Consensus 130 ~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 130 TYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcC
Confidence 7777777776642 1 444555555555555 4442 11 34445555555555555
Q ss_pred ccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCC-------cccCCCCCc
Q 041463 140 SGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDM-------KVEPPKSVQ 212 (356)
Q Consensus 140 ~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L-------~~~~~~~~~ 212 (356)
++. .+..+++|+.|++++|.+.+ +| + ..++. ++.|++++|.+.+..+..+..++.+ +........
T Consensus 204 ~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~-~~l~~-L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 204 TKL---DLNQNIQLTFLDCSSNKLTE-ID--V-TPLTQ-LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp SCC---CCTTCTTCSEEECCSSCCSC-CC--C-TTCTT-CSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred Cee---ccccCCCCCEEECcCCcccc-cC--c-cccCC-CCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCc
Confidence 422 24555566666666666553 33 1 11222 6666666666654433333333311 111111111
Q ss_pred cCCCeeeeecCCccccccccccccEEeecCCcccccCch--------hhhcccccCeEEccCCcCcCCCCcCcCCCCCcc
Q 041463 213 HEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPA--------ELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLE 284 (356)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~--------~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 284 (356)
..+ ...+..+++|+.|++++|...+..|. .+..+++|++|++++|.+++ + .++.+++|+
T Consensus 276 ~~~----------~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l--~l~~l~~L~ 342 (457)
T 3bz5_A 276 QLI----------YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-L--DVSHNTKLK 342 (457)
T ss_dssp TCC----------EEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-C--CCTTCTTCS
T ss_pred cCC----------cccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-c--ccccCCcCc
Confidence 111 11235678999999999976544332 25567899999999999986 3 388999999
Q ss_pred EEEccCCcccccCCcccc-------------CcCCCCEEEcccCcccccCCCC
Q 041463 285 TLDLSKNKLSGSIPPSMA-------------SLIFMNHLNLSYNNLSGEIPNT 324 (356)
Q Consensus 285 ~L~L~~n~i~~~~~~~~~-------------~l~~L~~L~l~~n~~~~~~~~~ 324 (356)
.|++++|++++. +. +. .+..|..+++++|+++|.+|..
T Consensus 343 ~L~l~~N~l~~l-~~-L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 343 SLSCVNAHIQDF-SS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp EEECCSSCCCBC-TT-GGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTT
T ss_pred EEECCCCCCCCc-cc-cccccccCCcEEecceeeecCccccccCcEEEEcChh
Confidence 999999999852 21 11 2356788899999999998865
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=9.8e-28 Score=209.01 Aligned_cols=269 Identities=22% Similarity=0.176 Sum_probs=206.5
Q ss_pred ceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463 5 LRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT 83 (356)
Q Consensus 5 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 83 (356)
++..+++.+.+.... ..+...+++|++|++++|.+++..+..+ .+++|++|++++|.+++. + .+..+++|++
T Consensus 12 l~i~~ls~~~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~-~~~~l~~L~~ 84 (317)
T 3o53_A 12 YKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-----L-DLESLSTLRT 84 (317)
T ss_dssp EEEESCCTTTHHHHH-HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-----E-EETTCTTCCE
T ss_pred eeEeeccccchhhhH-HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-----h-hhhhcCCCCE
Confidence 445556666665332 3333334799999999999987665555 689999999999998742 1 2788999999
Q ss_pred EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463 84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL 163 (356)
Q Consensus 84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 163 (356)
|++++|.+++.. ..++|++|++++|.+....+.. +++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 85 L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 85 LDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp EECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred EECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 999999987432 3489999999999998655443 57899999999999876677888899999999999998
Q ss_pred cccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCC
Q 041463 164 SGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSST 243 (356)
Q Consensus 164 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 243 (356)
.+..+..+...++. ++.|++++|.+.+. +. ...+++|+.|++++|
T Consensus 157 ~~~~~~~~~~~l~~-L~~L~L~~N~l~~~-~~---------------------------------~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 157 DTVNFAELAASSDT-LEHLNLQYNFIYDV-KG---------------------------------QVVFAKLKTLDLSSN 201 (317)
T ss_dssp CEEEGGGGGGGTTT-CCEEECTTSCCCEE-EC---------------------------------CCCCTTCCEEECCSS
T ss_pred CcccHHHHhhccCc-CCEEECCCCcCccc-cc---------------------------------ccccccCCEEECCCC
Confidence 86555555444444 99999999987643 11 112556777999999
Q ss_pred cccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCccc-ccCCccccCcCCCCEEEcccC-cccccC
Q 041463 244 NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS-GSIPPSMASLIFMNHLNLSYN-NLSGEI 321 (356)
Q Consensus 244 ~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n-~~~~~~ 321 (356)
.+.+.. ..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++. +..+.++..+++|+.++++++ .+.+..
T Consensus 202 ~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 202 KLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred cCCcch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 998544 45888899999999999998 67778888999999999999998 667788888999999999844 566666
Q ss_pred CCCc
Q 041463 322 PNTN 325 (356)
Q Consensus 322 ~~~~ 325 (356)
|...
T Consensus 280 ~~~~ 283 (317)
T 3o53_A 280 EEEC 283 (317)
T ss_dssp SCCC
T ss_pred hhcc
Confidence 5553
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.1e-24 Score=198.44 Aligned_cols=277 Identities=27% Similarity=0.391 Sum_probs=169.8
Q ss_pred ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI 82 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 82 (356)
++|++|++++|.+++ ++. ..++|++|++++|.+++ ++.+.++++|++|++++|.+++ +| .. .++|+
T Consensus 111 ~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~~-lp----~~---~~~L~ 176 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKK-LP----DL---PPSLE 176 (454)
T ss_dssp TTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSC-CC----CC---CTTCC
T ss_pred CCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcCcc-cC----CC---ccccc
Confidence 456777777776663 222 11589999999998885 5555578899999999998873 33 22 25888
Q ss_pred EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCc
Q 041463 83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNN 162 (356)
Q Consensus 83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 162 (356)
+|++++|.+.+ .| .+..+++|++|++++|.+.. .|.. .++|++|++++|.++ .+| .+..+++|+.|++++|.
T Consensus 177 ~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 177 FIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNL 248 (454)
T ss_dssp EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSC
T ss_pred EEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCc
Confidence 88888888875 44 57888888888888888774 3322 247888888888887 555 47788888888888888
Q ss_pred ccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCC------Ceeeee-cCCcccccccc-cc
Q 041463 163 LSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG------RLRVVT-KGSERKYFTTL-YL 234 (356)
Q Consensus 163 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~-~~ 234 (356)
+. .++... ..++.|++++|.+.+ +|.... +|+.+........+ .+.... .......+... ++
T Consensus 249 l~-~l~~~~-----~~L~~L~l~~N~l~~-l~~~~~---~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~ 318 (454)
T 1jl5_A 249 LK-TLPDLP-----PSLEALNVRDNYLTD-LPELPQ---SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS 318 (454)
T ss_dssp CS-SCCSCC-----TTCCEEECCSSCCSC-CCCCCT---TCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTT
T ss_pred CC-cccccc-----cccCEEECCCCcccc-cCcccC---cCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCc
Confidence 76 344321 337888888887764 444333 33332222211110 000000 00000111222 47
Q ss_pred ccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccc--cCCccccCc--------
Q 041463 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSG--SIPPSMASL-------- 304 (356)
Q Consensus 235 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l-------- 304 (356)
|+.|++++|.+.+ .|.. +++|++|++++|.++ .+|. .+++|++|++++|++++ .+|..+..+
T Consensus 319 L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~ 390 (454)
T 1jl5_A 319 LEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAE 390 (454)
T ss_dssp CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----
T ss_pred CCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccc
Confidence 8888888888875 3332 477888888888887 4555 46788888888888886 567777766
Q ss_pred -----CCCCEEEcccCcccc
Q 041463 305 -----IFMNHLNLSYNNLSG 319 (356)
Q Consensus 305 -----~~L~~L~l~~n~~~~ 319 (356)
++|+.|++++|++++
T Consensus 391 i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 391 VPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp --------------------
T ss_pred cccccCcCCEEECCCCcCCc
Confidence 778888888888887
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=1.2e-28 Score=226.10 Aligned_cols=311 Identities=19% Similarity=0.156 Sum_probs=154.4
Q ss_pred cccceEEEccccccccc----CCchHHhhccCCcEeeccCCccCCcCCCCC--CCC----CCcEEecCCCcccCcCCCCC
Q 041463 2 QTELRTLVLNKARISDT----IPDWFWQLSLTLDELDVAYNELRGRVPNSL--GFN----FPATVDLSSNNFEGRLPLCI 71 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~----~L~~L~l~~n~~~~~~~~~~ 71 (356)
+++|++|++++|.+++. ++..+..+ ++|++|++++|.+.+.....+ .+. +|++|++++|.++......+
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 45677777777777642 23334444 677777777777654322221 222 57777777777653221123
Q ss_pred CcccCCcccccEEeccccccccccccccc-----CCCCCcEEEcccCcccccc----cccccCCCCCcEEEeeccccccc
Q 041463 72 PKSIGNLKQLITLVISNNNLSGEIPLLFS-----NSSFLYILDMSNNSLSGSI----PESIGSLRTLRFLVLRNNYLSGE 142 (356)
Q Consensus 72 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~ 142 (356)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+.... +..+..+++|++|++++|.+++.
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 45566677777777777776533222221 2345777777776665432 33344456666666666665533
Q ss_pred cCcccc-----CCCCCcEEEecCCccccc----CCchhhcccccceeEEEcccCcccccC-----CCCcCCCCCCcccCC
Q 041463 143 LPLSLK-----NCTFMESLDLGDNNLSGN----IPAWIGASMPGLLHILDLSHNDLSGFI-----PPRVGNLSDMKVEPP 208 (356)
Q Consensus 143 ~~~~l~-----~l~~L~~L~l~~~~l~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~~-----~~~~~~l~~L~~~~~ 208 (356)
.+..+. ..++|+.|++++|.+.+. ++..+. .++ .++.|++++|.+.+.. +.....+++|+.+..
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~-~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKA-SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCC-CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 222221 234566666666655432 111111 122 2566666655543211 111112333333222
Q ss_pred CCCccCCCeeeeecCCcccccccc-----------------------------ccccEEeecCCccccc----Cchhhhc
Q 041463 209 KSVQHEGRLRVVTKGSERKYFTTL-----------------------------YLVNLLDLSSTNLSAE----IPAELTS 255 (356)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~L~~L~L~~~~l~~~----~~~~~~~ 255 (356)
........ . .......+..+ ++|+.|++++|.+++. .+..+..
T Consensus 264 ~~n~l~~~-~---~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 264 WECGITAK-G---CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339 (461)
T ss_dssp TTSCCCHH-H---HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred cCCCCCHH-H---HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence 21110000 0 00000111222 4566666666665543 2334444
Q ss_pred ccccCeEEccCCcCcCCCCcCcC-----CCCCccEEEccCCcccc----cCCccccCcCCCCEEEcccCcccc
Q 041463 256 LVHLGTLNLSHNHLVGKIPEEIG-----NFEWLETLDLSKNKLSG----SIPPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 256 ~~~L~~L~L~~n~i~~~~~~~~~-----~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
+++|++|++++|.+++..+..+. ..++|++|++++|++++ .++..+..+++|++|++++|++++
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 56666666666666543222222 14566666666666664 345555556666666666666654
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.2e-26 Score=201.78 Aligned_cols=250 Identities=21% Similarity=0.219 Sum_probs=173.4
Q ss_pred cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccC-------CcccccEEecccccccccccccc-
Q 041463 28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIG-------NLKQLITLVISNNNLSGEIPLLF- 99 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~i~~~~~~~~- 99 (356)
++|++|++++|.+ ..|..+. ..|+.|++++|.+... .++..+. .+++|++|++++|.+.+..|..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~-~~L~~L~L~~n~l~~~---~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFT-DIIKSLSLKRLTVRAA---RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHH-HHHHHCCCCEEEEEEE---ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCceeEeeccccc--ccHHHHH-HHHhhcccccccccCC---CcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 5677777777776 2333221 1277777777776421 1223332 57788888888888876666654
Q ss_pred -cCCCCCcEEEcccCcccccccccccCC-----CCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccC--Cchh
Q 041463 100 -SNSSFLYILDMSNNSLSGSIPESIGSL-----RTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNI--PAWI 171 (356)
Q Consensus 100 -~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~ 171 (356)
..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.. +..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 7788888888888887755 5555554 78888888888887666677888888888888888765331 2122
Q ss_pred -hcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCc
Q 041463 172 -GASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIP 250 (356)
Q Consensus 172 -~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 250 (356)
...++. |+.|++++|.+.+. +.. ....+..+++|+.|++++|.+.+..+
T Consensus 196 ~~~~l~~-L~~L~L~~N~l~~~-~~~----------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 196 CPLKFPT-LQVLALRNAGMETP-SGV----------------------------CSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp CTTSCTT-CCEEECTTSCCCCH-HHH----------------------------HHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HhccCCC-CCEEECCCCcCcch-HHH----------------------------HHHHHhcCCCCCEEECCCCcCCcccc
Confidence 122333 88888888876521 100 01123455677889999999886553
Q ss_pred -hhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463 251 -AELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 251 -~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 34556789999999999998 7777766 8999999999999955 65 8889999999999999875
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.5e-24 Score=185.30 Aligned_cols=215 Identities=23% Similarity=0.227 Sum_probs=140.5
Q ss_pred cccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEec
Q 041463 80 QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLG 159 (356)
Q Consensus 80 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 159 (356)
++++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45556666655554444455556666666666666554444555556666666666666654444555666666666666
Q ss_pred CCcccccCCchhhcccccceeEEEcccCccccc-CCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEE
Q 041463 160 DNNLSGNIPAWIGASMPGLLHILDLSHNDLSGF-IPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLL 238 (356)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 238 (356)
+|.+.+..+..+ ..++. |+.|++++|.+.+. +|. .+..+++|+.|
T Consensus 109 ~n~l~~~~~~~~-~~l~~-L~~L~l~~n~l~~~~l~~--------------------------------~~~~l~~L~~L 154 (276)
T 2z62_A 109 ETNLASLENFPI-GHLKT-LKELNVAHNLIQSFKLPE--------------------------------YFSNLTNLEHL 154 (276)
T ss_dssp TSCCCCSTTCCC-TTCTT-CCEEECCSSCCCCCCCCG--------------------------------GGGGCTTCCEE
T ss_pred CCCccccCchhc-ccCCC-CCEEECcCCccceecCch--------------------------------hhccCCCCCEE
Confidence 665553222222 22222 66666666655421 122 23455667778
Q ss_pred eecCCcccccCchhhhcccccC----eEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEccc
Q 041463 239 DLSSTNLSAEIPAELTSLVHLG----TLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSY 314 (356)
Q Consensus 239 ~L~~~~l~~~~~~~~~~~~~L~----~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 314 (356)
++++|.+.+..+..+..+++|+ +|++++|.+.+..+..+ ...+|++|++++|++++..+..|..+++|++|++++
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 9999988877777777777777 89999999985444444 445899999999999977777789999999999999
Q ss_pred CcccccCCCCcccCc
Q 041463 315 NNLSGEIPNTNQFQT 329 (356)
Q Consensus 315 n~~~~~~~~~~~l~~ 329 (356)
|++.+..|.+..+..
T Consensus 234 N~~~c~c~~l~~l~~ 248 (276)
T 2z62_A 234 NPWDCSCPRIDYLSR 248 (276)
T ss_dssp SCBCCCTTTTHHHHH
T ss_pred CcccccCCchHHHHH
Confidence 999988877754433
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.2e-24 Score=186.80 Aligned_cols=204 Identities=24% Similarity=0.246 Sum_probs=116.7
Q ss_pred ccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCC
Q 041463 74 SIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFM 153 (356)
Q Consensus 74 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L 153 (356)
.+..++++++++++++.++ .+|..+. +++++|++++|.+....+..+..+++|++|++++|.+++..+ ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 4556777888888887776 4444332 577888888888776666777777788888888877764322 2566677
Q ss_pred cEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccc
Q 041463 154 ESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLY 233 (356)
Q Consensus 154 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (356)
+.|++++|.+. .+|..+.. ++. ++.|++++|.+++..+..+ ..++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~-l~~-L~~L~l~~N~l~~l~~~~~--------------------------------~~l~ 124 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQT-LPA-LTVLDVSFNRLTSLPLGAL--------------------------------RGLG 124 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTT-CTT-CCEEECCSSCCCCCCSSTT--------------------------------TTCT
T ss_pred CEEECCCCcCC-cCchhhcc-CCC-CCEEECCCCcCcccCHHHH--------------------------------cCCC
Confidence 77777777665 44433321 222 5566665555543222222 2233
Q ss_pred cccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463 234 LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS 313 (356)
Q Consensus 234 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 313 (356)
+|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.++++
T Consensus 125 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECC
T ss_pred CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeC
Confidence 3444555555555444444555555555555555555333334455555555555555555 344444444555555555
Q ss_pred cCccc
Q 041463 314 YNNLS 318 (356)
Q Consensus 314 ~n~~~ 318 (356)
+|++.
T Consensus 204 ~Np~~ 208 (290)
T 1p9a_G 204 GNPWL 208 (290)
T ss_dssp SCCBC
T ss_pred CCCcc
Confidence 55554
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=5.7e-24 Score=199.69 Aligned_cols=263 Identities=24% Similarity=0.266 Sum_probs=202.4
Q ss_pred cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463 4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT 83 (356)
Q Consensus 4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 83 (356)
++++|+++++.++ .+|..+. ++|++|++++|.++. ++. .+++|++|++++|.+++ +|. .+++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~ 105 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTS-----LPV---LPPGLLE 105 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC--CCTTCCEEEECSCCCSC-----CCC---CCTTCCE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC--cCCCCCEEEcCCCcCCc-----CCC---CCCCCCE
Confidence 5889999999998 5676554 689999999999984 444 57899999999999872 333 5799999
Q ss_pred EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463 84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL 163 (356)
Q Consensus 84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 163 (356)
|++++|.+.+ ++. .+++|++|++++|.+.. .|.. +++|++|++++|.++ .+|. .+++|+.|++++|.+
T Consensus 106 L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 106 LSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQL 173 (622)
T ss_dssp EEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC
T ss_pred EECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCC
Confidence 9999999884 343 57889999999999884 4433 489999999999998 4443 356899999999998
Q ss_pred cccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCC
Q 041463 164 SGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSST 243 (356)
Q Consensus 164 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 243 (356)
. .++. ....|+.|++++|.+.+ +|.....+..|. ....... . ....+++|+.|++++|
T Consensus 174 ~-~l~~-----~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~---L~~N~l~-~-----------l~~~~~~L~~L~Ls~N 231 (622)
T 3g06_A 174 T-SLPM-----LPSGLQELSVSDNQLAS-LPTLPSELYKLW---AYNNRLT-S-----------LPALPSGLKELIVSGN 231 (622)
T ss_dssp S-CCCC-----CCTTCCEEECCSSCCSC-CCCCCTTCCEEE---CCSSCCS-S-----------CCCCCTTCCEEECCSS
T ss_pred C-CCcc-----cCCCCcEEECCCCCCCC-CCCccchhhEEE---CcCCccc-c-----------cCCCCCCCCEEEccCC
Confidence 7 4552 22349999999999874 444443333332 2221111 1 1123478999999999
Q ss_pred cccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCC
Q 041463 244 NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPN 323 (356)
Q Consensus 244 ~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 323 (356)
.+++ +| ..+++|++|++++|.++ .+|. .+++|+.|++++|+++ .+|..+.++++|+.|++++|++++.+|.
T Consensus 232 ~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 232 RLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 9985 44 45689999999999998 5665 5789999999999999 7788899999999999999999987665
Q ss_pred C
Q 041463 324 T 324 (356)
Q Consensus 324 ~ 324 (356)
.
T Consensus 303 ~ 303 (622)
T 3g06_A 303 A 303 (622)
T ss_dssp H
T ss_pred H
Confidence 4
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.5e-23 Score=191.02 Aligned_cols=280 Identities=24% Similarity=0.322 Sum_probs=195.5
Q ss_pred ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI 82 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 82 (356)
++|++|++++|.+++ +|.. .++|++|++++|.+++. +.. .++|++|++++|.+++ +| .+..+++|+
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l-~~~--~~~L~~L~L~~n~l~~-----lp-~~~~l~~L~ 156 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKAL-SDL--PPLLEYLGVSNNQLEK-----LP-ELQNSSFLK 156 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSCC-CSC--CTTCCEEECCSSCCSS-----CC-CCTTCTTCC
T ss_pred CCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCcc-cCC--CCCCCEEECcCCCCCC-----Cc-ccCCCCCCC
Confidence 468999999999986 5543 27899999999988853 222 2799999999999883 44 488999999
Q ss_pred EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCc
Q 041463 83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNN 162 (356)
Q Consensus 83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 162 (356)
+|++++|.+++ +|.. ..+|++|++++|.+.. .| .+..+++|++|++++|.+++ +|.. .++|+.|++++|.
T Consensus 157 ~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 157 IIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNI 226 (454)
T ss_dssp EEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSC
T ss_pred EEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCc
Confidence 99999999984 4543 3599999999999985 45 68999999999999999984 4432 2589999999999
Q ss_pred ccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCC------Ceeeeec-CCccccc-ccccc
Q 041463 163 LSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEG------RLRVVTK-GSERKYF-TTLYL 234 (356)
Q Consensus 163 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~------~~~~~~~-~~~~~~~-~~~~~ 234 (356)
+. .+|. + ..++. ++.|++++|.+.+ +|.... +|+.+........+ .+..... ......+ .-.++
T Consensus 227 l~-~lp~-~-~~l~~-L~~L~l~~N~l~~-l~~~~~---~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~ 298 (454)
T 1jl5_A 227 LE-ELPE-L-QNLPF-LTTIYADNNLLKT-LPDLPP---SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 298 (454)
T ss_dssp CS-SCCC-C-TTCTT-CCEEECCSSCCSS-CCSCCT---TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTT
T ss_pred CC-cccc-c-CCCCC-CCEEECCCCcCCc-cccccc---ccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCc
Confidence 87 6664 3 33444 9999999999874 454433 34433222221111 0000000 0000000 11245
Q ss_pred ccEEeecCCcccccCchhhhcc-cccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463 235 VNLLDLSSTNLSAEIPAELTSL-VHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS 313 (356)
Q Consensus 235 L~~L~L~~~~l~~~~~~~~~~~-~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 313 (356)
|+.|++++|.+.+. ..+ ++|++|++++|.+.+ +|.. +++|++|++++|+++ .+|. .+++|++|+++
T Consensus 299 L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~ 365 (454)
T 1jl5_A 299 LYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVE 365 (454)
T ss_dssp CCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred CCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECC
Confidence 66666666666531 122 478899999988884 5544 578999999999998 5565 46889999999
Q ss_pred cCcccc--cCCCC-ccc
Q 041463 314 YNNLSG--EIPNT-NQF 327 (356)
Q Consensus 314 ~n~~~~--~~~~~-~~l 327 (356)
+|++++ .+|.. ..+
T Consensus 366 ~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 366 YNPLREFPDIPESVEDL 382 (454)
T ss_dssp SSCCSSCCCCCTTCCEE
T ss_pred CCCCCcCCCChHHHHhh
Confidence 999998 44443 444
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=4.6e-29 Score=228.95 Aligned_cols=315 Identities=16% Similarity=0.122 Sum_probs=204.2
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCc----CCCCC-CCCCCcEEecCCCcccCcCCCCCCcccC
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGR----VPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIG 76 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 76 (356)
.++|++|+++++.+++.....+...+++|++|++++|.+++. ++..+ .+++|++|++++|.+.+..+..+...+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 367999999999998655444334449999999999998743 23333 5799999999999886432211112222
Q ss_pred Ccc-cccEEecccccccc----cccccccCCCCCcEEEcccCcccccccccc-----cCCCCCcEEEeecccccccc---
Q 041463 77 NLK-QLITLVISNNNLSG----EIPLLFSNSSFLYILDMSNNSLSGSIPESI-----GSLRTLRFLVLRNNYLSGEL--- 143 (356)
Q Consensus 77 ~l~-~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~l~~~~--- 143 (356)
... +|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 222 79999999999874 347788999999999999999875444332 23568999999999988543
Q ss_pred -CccccCCCCCcEEEecCCcccccCCchhhccc---ccceeEEEcccCccccc----CCCCcCCCCCCcccCCCCCccCC
Q 041463 144 -PLSLKNCTFMESLDLGDNNLSGNIPAWIGASM---PGLLHILDLSHNDLSGF----IPPRVGNLSDMKVEPPKSVQHEG 215 (356)
Q Consensus 144 -~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~~~~~~~~~~~ 215 (356)
+..+..+++|+.|++++|.+.+..+..+...+ ...++.|++++|.+... ++..+..+++|+.+.........
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 45567789999999999998754444443322 12499999999988753 34455556666664443322110
Q ss_pred CeeeeecCCccccccccccccEEeecCCccccc----CchhhhcccccCeEEccCCcCcCCCCcCcC-----CCCCccEE
Q 041463 216 RLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAE----IPAELTSLVHLGTLNLSHNHLVGKIPEEIG-----NFEWLETL 286 (356)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-----~~~~L~~L 286 (356)
.. ........+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|
T Consensus 242 -~~--~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 242 -VG--MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp -HH--HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred -HH--HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 00 0000112233578999999999998864 455666788899999988887643222221 12355555
Q ss_pred EccCCccccc----CCccccCcCCCCEEEcccCcccc
Q 041463 287 DLSKNKLSGS----IPPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 287 ~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
++++|.+++. ++..+..+++|++|++++|++.+
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 5555555432 22333334445555555544443
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=3.7e-24 Score=182.08 Aligned_cols=207 Identities=24% Similarity=0.243 Sum_probs=145.2
Q ss_pred ccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEe
Q 041463 79 KQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDL 158 (356)
Q Consensus 79 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 158 (356)
...+.++++++.++ .+|..+. +++++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35778888888887 4555442 67889999998888666677888888999999888888554555677888888888
Q ss_pred cCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEE
Q 041463 159 GDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLL 238 (356)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 238 (356)
++|.+. ..+......++. |+.|++++|.+....+..+ ..+++|+.|
T Consensus 93 ~~n~l~-~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~--------------------------------~~l~~L~~L 138 (270)
T 2o6q_A 93 TDNKLQ-ALPIGVFDQLVN-LAELRLDRNQLKSLPPRVF--------------------------------DSLTKLTYL 138 (270)
T ss_dssp CSSCCC-CCCTTTTTTCSS-CCEEECCSSCCCCCCTTTT--------------------------------TTCTTCCEE
T ss_pred CCCcCC-cCCHhHcccccC-CCEEECCCCccCeeCHHHh--------------------------------CcCcCCCEE
Confidence 888877 344333333433 7788887777654333222 344455567
Q ss_pred eecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463 239 DLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS 318 (356)
Q Consensus 239 ~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 318 (356)
++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus 139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 77777777655555677777777777777777555556777777777777777777555556777777777777777776
Q ss_pred ccCC
Q 041463 319 GEIP 322 (356)
Q Consensus 319 ~~~~ 322 (356)
...+
T Consensus 219 c~c~ 222 (270)
T 2o6q_A 219 CTCN 222 (270)
T ss_dssp CSSS
T ss_pred CCCc
Confidence 5544
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=6.5e-26 Score=208.51 Aligned_cols=147 Identities=25% Similarity=0.187 Sum_probs=78.6
Q ss_pred CCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463 29 TLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107 (356)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 107 (356)
+|++|++++|.+++..+..+ .+++|++|++++|.+++.. .+..+++|++|++++|.+.+.. ..++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL------DLESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE------ECTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc------ccccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 66667776666665544444 4666666666666665321 1555666666666666655221 1255666
Q ss_pred EEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccC
Q 041463 108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN 187 (356)
Q Consensus 108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 187 (356)
|++++|.+....+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+...++. |+.|++++|
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~-L~~L~Ls~N 179 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-LEHLNLQYN 179 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT-CCEEECTTS
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc-ccEEecCCC
Confidence 66666665543332 23456666666666654445555555556666665555554333333322222 555555554
Q ss_pred ccc
Q 041463 188 DLS 190 (356)
Q Consensus 188 ~l~ 190 (356)
.+.
T Consensus 180 ~l~ 182 (487)
T 3oja_A 180 FIY 182 (487)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=4.7e-27 Score=204.23 Aligned_cols=240 Identities=20% Similarity=0.215 Sum_probs=181.4
Q ss_pred CCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccc-cccccccc-------CCCCCcEEEcccCcccccccc
Q 041463 50 FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLS-GEIPLLFS-------NSSFLYILDMSNNSLSGSIPE 121 (356)
Q Consensus 50 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~ 121 (356)
..+|+.+++++|.+ .+| ..+... ++.|++++|.+. ...+..+. .+++|++|++++|.+.+..|.
T Consensus 42 ~~~L~~l~l~~n~l--~~p----~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADL----GQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEECTTHHHHCCTT--CCC----HHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred CCCceeEeeccccc--ccH----HHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 56788889999887 333 333322 888899999884 23444444 689999999999999877777
Q ss_pred cc--cCCCCCcEEEeeccccccccCccccCC-----CCCcEEEecCCcccccCCchhhcccccceeEEEcccCccccc--
Q 041463 122 SI--GSLRTLRFLVLRNNYLSGELPLSLKNC-----TFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGF-- 192 (356)
Q Consensus 122 ~~--~~l~~L~~L~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-- 192 (356)
.+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+.. ++. |+.|++++|.+.+.
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~-l~~-L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV-FPA-LSTLDLSDNPELGERG 190 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC-CSS-CCEEECCSCTTCHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc-CCC-CCEEECCCCCcCcchH
Confidence 65 7899999999999999865 7767666 89999999999998555455543 444 99999999986543
Q ss_pred CCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCccccc---CchhhhcccccCeEEccCCcC
Q 041463 193 IPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAE---IPAELTSLVHLGTLNLSHNHL 269 (356)
Q Consensus 193 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~L~~L~L~~n~i 269 (356)
.+..+ .+..+++|+.|++++|.+.+. ....+..+++|++|++++|.+
T Consensus 191 ~~~~~------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 191 LISAL------------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp HHHHS------------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred HHHHH------------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 12111 123455677799999998832 223445678999999999999
Q ss_pred cCCCC-cCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCcc
Q 041463 270 VGKIP-EEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPS 334 (356)
Q Consensus 270 ~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~ 334 (356)
.+..| ..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |....++.|+.++
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~ 302 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLS 302 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEE
T ss_pred CcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEe
Confidence 86664 45667899999999999999 6676665 7899999999999987 6688888888776
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=3.6e-25 Score=192.82 Aligned_cols=254 Identities=19% Similarity=0.156 Sum_probs=188.9
Q ss_pred CcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463 30 LDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL 108 (356)
Q Consensus 30 L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 108 (356)
++..++..+.+.......+ .+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 85 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC----CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcC----CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence 4455555555543333333 367899999999988752 23678889999999999999875544 8889999999
Q ss_pred EcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCc
Q 041463 109 DMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHND 188 (356)
Q Consensus 109 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 188 (356)
++++|.+.... ..++|++|++++|.+++..+. .+++|+.|++++|.+.+..+..+.. ++. ++.|++++|.
T Consensus 86 ~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~-l~~-L~~L~Ls~N~ 155 (317)
T 3o53_A 86 DLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC-RSR-VQYLDLKLNE 155 (317)
T ss_dssp ECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGG-GSS-EEEEECTTSC
T ss_pred ECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhc-cCC-CCEEECCCCC
Confidence 99999887433 237899999999998854433 3678999999999987544434432 333 8999999988
Q ss_pred ccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCc
Q 041463 189 LSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH 268 (356)
Q Consensus 189 l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~ 268 (356)
+.+..+..+ ...+++|+.|++++|.+.+.. . ...+++|++|++++|.
T Consensus 156 l~~~~~~~~-------------------------------~~~l~~L~~L~L~~N~l~~~~-~-~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 156 IDTVNFAEL-------------------------------AASSDTLEHLNLQYNFIYDVK-G-QVVFAKLKTLDLSSNK 202 (317)
T ss_dssp CCEEEGGGG-------------------------------GGGTTTCCEEECTTSCCCEEE-C-CCCCTTCCEEECCSSC
T ss_pred CCcccHHHH-------------------------------hhccCcCCEEECCCCcCcccc-c-ccccccCCEEECCCCc
Confidence 765432222 235667888999999998542 2 2247899999999999
Q ss_pred CcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc-ccCCCC-cccCcCCCcc
Q 041463 269 LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS-GEIPNT-NQFQTLNDPS 334 (356)
Q Consensus 269 i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~-~~l~~l~~~~ 334 (356)
++ .++..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.+|.. ..++.|+.++
T Consensus 203 l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp CC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred CC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 98 45566889999999999999999 56777889999999999999998 444444 6677777766
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5.1e-24 Score=181.89 Aligned_cols=209 Identities=20% Similarity=0.202 Sum_probs=169.5
Q ss_pred CCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEE
Q 041463 103 SFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHIL 182 (356)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L 182 (356)
++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.. ++. |+.|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~-L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSS-LQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTT-CCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC-Ccc-ccEE
Confidence 57999999999999777778999999999999999998666778999999999999999998555444433 444 9999
Q ss_pred EcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCccccc-CchhhhcccccCe
Q 041463 183 DLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAE-IPAELTSLVHLGT 261 (356)
Q Consensus 183 ~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~~~L~~ 261 (356)
++++|.+.+..+.. +..+++|+.|++++|.+.+. .|..+..+++|++
T Consensus 106 ~l~~n~l~~~~~~~--------------------------------~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 106 VAVETNLASLENFP--------------------------------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (276)
T ss_dssp ECTTSCCCCSTTCC--------------------------------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred ECCCCCccccCchh--------------------------------cccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence 99999876443323 34556677799999999864 5888999999999
Q ss_pred EEccCCcCcCCCCcCcCCCCCcc----EEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-cccCcCCCcccc
Q 041463 262 LNLSHNHLVGKIPEEIGNFEWLE----TLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQTLNDPSIY 336 (356)
Q Consensus 262 L~L~~n~i~~~~~~~~~~~~~L~----~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~~~~~ 336 (356)
|++++|.+++..+..+..+++|+ .|++++|.+++..+..+.. .+|++|++++|++++.++.. ..++.|+.++
T Consensus 154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-- 230 (276)
T 2z62_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIW-- 230 (276)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEE--
T ss_pred EECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEE--
Confidence 99999999866667777666666 8999999999666665554 58999999999999887765 6677777665
Q ss_pred ccCccccCCCCCCCCCC
Q 041463 337 EGNLALCGDPLPKKCPE 353 (356)
Q Consensus 337 ~~~~~~~~~~~~~~c~~ 353 (356)
+.+|||.|+|+.
T Consensus 231 -----l~~N~~~c~c~~ 242 (276)
T 2z62_A 231 -----LHTNPWDCSCPR 242 (276)
T ss_dssp -----CCSSCBCCCTTT
T ss_pred -----ccCCcccccCCc
Confidence 456899999963
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8.9e-25 Score=200.95 Aligned_cols=253 Identities=19% Similarity=0.133 Sum_probs=187.0
Q ss_pred CCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCC
Q 041463 50 FNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTL 129 (356)
Q Consensus 50 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 129 (356)
+++|++|++++|.+.+. .|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+....+ .++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSI 101 (487)
T ss_dssp GGGCCEEECCSSCCCCC----CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTC
T ss_pred CCCccEEEeeCCcCCCC----CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCc
Confidence 45899999999988752 34678888999999999998875554 8888999999999998874432 2789
Q ss_pred cEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCC
Q 041463 130 RFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPK 209 (356)
Q Consensus 130 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~ 209 (356)
++|++++|.+++..+. .+++|+.|++++|.+.+..+..+.. ++. |+.|++++|.+.+..|..+
T Consensus 102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~-l~~-L~~L~Ls~N~l~~~~~~~l------------ 164 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC-RSR-VQYLDLKLNEIDTVNFAEL------------ 164 (487)
T ss_dssp CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG-GSS-EEEEECTTSCCCEEEGGGG------------
T ss_pred CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC-CCC-CCEEECCCCCCCCcChHHH------------
Confidence 9999999988855443 4578999999999887655555433 333 8999999988775444332
Q ss_pred CCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEcc
Q 041463 210 SVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLS 289 (356)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~ 289 (356)
...+++|+.|+|++|.+.+..+ ...+++|+.|++++|.+++ +|..+..+++|+.|+++
T Consensus 165 -------------------~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls 222 (487)
T 3oja_A 165 -------------------AASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLR 222 (487)
T ss_dssp -------------------GGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECT
T ss_pred -------------------hhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEec
Confidence 2345677889999999986532 3357899999999999984 55568889999999999
Q ss_pred CCcccccCCccccCcCCCCEEEcccCccc-ccCCCC-cccCcCCCccccccCccccCCCCCCCCCC
Q 041463 290 KNKLSGSIPPSMASLIFMNHLNLSYNNLS-GEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCPE 353 (356)
Q Consensus 290 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~~ 353 (356)
+|.++ .+|..+..+++|+.|++++|++. +.+|.. ..++.|+.+.+........++|+.|.|..
T Consensus 223 ~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp TSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred CCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 99999 56777888999999999999998 444333 55666665542111112236778888764
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=8e-23 Score=173.85 Aligned_cols=204 Identities=24% Similarity=0.239 Sum_probs=161.4
Q ss_pred CCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCc
Q 041463 51 NFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLR 130 (356)
Q Consensus 51 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 130 (356)
...++++++++.++ .+ |..+. +++++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+
T Consensus 16 ~~~~~l~~~~~~l~-~i----p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AI----PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88 (270)
T ss_dssp TTTTEEECTTSCCS-SC----CSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred CCCCEEEccCCCCC-cc----CCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence 35788999999887 33 33332 6789999999999877677889999999999999999866666778899999
Q ss_pred EEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCC
Q 041463 131 FLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKS 210 (356)
Q Consensus 131 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~ 210 (356)
+|++++|.++...+..+..+++|+.|++++|.+.+..+..+ ..++. |+.|++++|.+.+..+..+
T Consensus 89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~-L~~L~Ls~n~l~~~~~~~~------------- 153 (270)
T 2o6q_A 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF-DSLTK-LTYLSLGYNELQSLPKGVF------------- 153 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT-TTCTT-CCEEECCSSCCCCCCTTTT-------------
T ss_pred EEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh-CcCcC-CCEEECCCCcCCccCHhHc-------------
Confidence 99999999986666677889999999999999874444333 33444 9999999998764333223
Q ss_pred CccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccC
Q 041463 211 VQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSK 290 (356)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~ 290 (356)
..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 154 -------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 154 -------------------DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp -------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred -------------------cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 3455667799999999877777788899999999999999865566788899999999999
Q ss_pred Ccccc
Q 041463 291 NKLSG 295 (356)
Q Consensus 291 n~i~~ 295 (356)
|++..
T Consensus 215 N~~~c 219 (270)
T 2o6q_A 215 NPWDC 219 (270)
T ss_dssp SCBCC
T ss_pred CCeeC
Confidence 98863
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.8e-22 Score=171.14 Aligned_cols=201 Identities=24% Similarity=0.212 Sum_probs=162.3
Q ss_pred CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCC
Q 041463 49 GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRT 128 (356)
Q Consensus 49 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 128 (356)
.++++++++++++.++ . +|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+....+. ..+++
T Consensus 8 ~l~~l~~l~~~~~~l~-~----ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~ 78 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-A----LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPV 78 (290)
T ss_dssp CSTTCCEEECTTSCCS-S----CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTT
T ss_pred ccCCccEEECCCCCCC-c----CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCc
Confidence 5788999999999887 3 344442 6899999999999877788899999999999999998854432 67899
Q ss_pred CcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCC
Q 041463 129 LRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPP 208 (356)
Q Consensus 129 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~ 208 (356)
|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..+ ..++. |+.|++++|.+.+..+..+
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~l~~-L~~L~L~~N~l~~~~~~~~----------- 144 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGE-LQELYLKGNELKTLPPGLL----------- 144 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT-TTCTT-CCEEECTTSCCCCCCTTTT-----------
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH-cCCCC-CCEEECCCCCCCccChhhc-----------
Confidence 999999999998 778888899999999999999984333434 33444 9999999998874433333
Q ss_pred CCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEc
Q 041463 209 KSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDL 288 (356)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L 288 (356)
..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+...++|+.|++
T Consensus 145 ---------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 145 ---------------------TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp ---------------------TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEEC
T ss_pred ---------------------ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEe
Confidence 34556677999999999766677888999999999999998 77888888889999999
Q ss_pred cCCccc
Q 041463 289 SKNKLS 294 (356)
Q Consensus 289 ~~n~i~ 294 (356)
++|++.
T Consensus 203 ~~Np~~ 208 (290)
T 1p9a_G 203 HGNPWL 208 (290)
T ss_dssp CSCCBC
T ss_pred CCCCcc
Confidence 999876
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=1.6e-21 Score=183.13 Aligned_cols=256 Identities=25% Similarity=0.244 Sum_probs=194.3
Q ss_pred cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463 28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 107 (356)
.++++|+++++.++ .+|..+. ++|++|++++|.++ . +|. .+++|++|++++|.++ .+|. .+++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~-~----lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLT-S----LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCS-C----CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCE
T ss_pred CCCcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCC-C----CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCE
Confidence 46999999999998 5555444 89999999999987 2 333 4789999999999998 4444 6799999
Q ss_pred EEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccC
Q 041463 108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN 187 (356)
Q Consensus 108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 187 (356)
|++++|.+... |. .+++|++|++++|.++ .+|.. +++|++|++++|.+. .++.. +..++.|++++|
T Consensus 106 L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~-~l~~~-----~~~L~~L~L~~N 171 (622)
T 3g06_A 106 LSIFSNPLTHL-PA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL-----PSELCKLWAYNN 171 (622)
T ss_dssp EEECSCCCCCC-CC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC-----CTTCCEEECCSS
T ss_pred EECcCCcCCCC-CC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCC-CcCCc-----cCCCCEEECCCC
Confidence 99999999843 43 5679999999999998 45543 489999999999987 44432 234999999999
Q ss_pred cccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCC
Q 041463 188 DLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHN 267 (356)
Q Consensus 188 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n 267 (356)
.+.. +|. .+++|+.+......... .....++|+.|++++|.+.. ++. .+++|++|++++|
T Consensus 172 ~l~~-l~~---~~~~L~~L~Ls~N~l~~------------l~~~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N 231 (622)
T 3g06_A 172 QLTS-LPM---LPSGLQELSVSDNQLAS------------LPTLPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGN 231 (622)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC------------CCCCCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSS
T ss_pred CCCC-Ccc---cCCCCcEEECCCCCCCC------------CCCccchhhEEECcCCcccc-cCC---CCCCCCEEEccCC
Confidence 9874 453 34445543333322111 11134789999999999984 433 2478999999999
Q ss_pred cCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCCcccCcCCCccccccCc
Q 041463 268 HLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNTNQFQTLNDPSIYEGNL 340 (356)
Q Consensus 268 ~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~~~~~~~ 340 (356)
.++ .+| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++..++.+..++.|+.++ +.+|+
T Consensus 232 ~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~-L~~N~ 295 (622)
T 3g06_A 232 RLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVN-LEGNP 295 (622)
T ss_dssp CCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEE-CCSCC
T ss_pred ccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEE-ecCCC
Confidence 998 455 45689999999999999 5565 56899999999999996655568888888877 44443
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=3.4e-22 Score=170.12 Aligned_cols=222 Identities=19% Similarity=0.165 Sum_probs=142.1
Q ss_pred CCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463 29 TLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL 108 (356)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 108 (356)
.+..+++..+.+.+. .....+++|+.|+++++.+.. + ..+..+++|++|++++|.+.+. ..+..+++|++|
T Consensus 20 ~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~-----~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 90 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-----V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCC-----C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEE
T ss_pred HHHHHHhcCcccccc-cccccccceeeeeeCCCCccc-----c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEE
Confidence 444566666555422 222246677777777776652 1 2355667777777777766532 245566666666
Q ss_pred EcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCc
Q 041463 109 DMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHND 188 (356)
Q Consensus 109 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 188 (356)
++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------------ 146 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ------------------------ 146 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC------------------------
Confidence 66666666555555566666666666666665444444555555555555555543
Q ss_pred ccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCc
Q 041463 189 LSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH 268 (356)
Q Consensus 189 l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~ 268 (356)
+..+.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 147 --~~~~~~--------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 147 --SLPKGV--------------------------------FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp --CCCTTT--------------------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred --ccCHHH--------------------------------hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 221111 2233445557777777776666667778888888888888
Q ss_pred CcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC
Q 041463 269 LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT 324 (356)
Q Consensus 269 i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 324 (356)
+.+..+..+..+++|++|++++|.+. +.++.|+.+++..|.++|.+|..
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCc
Confidence 88666667788888999999988776 33567888888888998888776
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.6e-24 Score=192.21 Aligned_cols=159 Identities=19% Similarity=0.172 Sum_probs=85.9
Q ss_pred EEEcccccccccCCchHHhhccCCcEeeccCCccCCcCC----CCC-CCC-CCcEEecCCCcccCcCCCCCCcccCCc-c
Q 041463 7 TLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVP----NSL-GFN-FPATVDLSSNNFEGRLPLCIPKSIGNL-K 79 (356)
Q Consensus 7 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~-~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~l-~ 79 (356)
.+.++++.+++.+|..+... ++|++|++++|.+++..+ ..+ .++ +|++|++++|.+++..+..+...+... +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 35677788876666544333 558888888887775544 333 455 677777777776643221111111222 6
Q ss_pred cccEEeccccccccccccc----ccCC-CCCcEEEcccCcccccccccc----cC-CCCCcEEEeeccccccccC----c
Q 041463 80 QLITLVISNNNLSGEIPLL----FSNS-SFLYILDMSNNSLSGSIPESI----GS-LRTLRFLVLRNNYLSGELP----L 145 (356)
Q Consensus 80 ~L~~L~l~~~~i~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~----~~-l~~L~~L~l~~~~l~~~~~----~ 145 (356)
+|++|++++|.+++..+.. +..+ ++|++|++++|.+.+..+..+ .. .++|++|++++|.+++..+ .
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 6677777777665444432 2233 566666666666654443322 22 2356666666666553222 2
Q ss_pred cccCCC-CCcEEEecCCccccc
Q 041463 146 SLKNCT-FMESLDLGDNNLSGN 166 (356)
Q Consensus 146 ~l~~l~-~L~~L~l~~~~l~~~ 166 (356)
.+...+ +|+.|++++|.+.+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGS
T ss_pred HHhcCCccccEeeecCCCCchh
Confidence 223333 566666666655533
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.3e-22 Score=172.59 Aligned_cols=226 Identities=21% Similarity=0.191 Sum_probs=165.5
Q ss_pred eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEe
Q 041463 6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLV 85 (356)
Q Consensus 6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ 85 (356)
..+++..+.+.+.. ....+ ++|++|++.++.++ ..+....+++|++|++++|.+.+ + ..+..+++|++|+
T Consensus 22 ~~l~l~~~~~~~~~--~~~~l-~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 22 IKANLKKKSVTDAV--TQNEL-NSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHD-----I-SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHTCSCTTSEE--CHHHH-TTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCC-----C-GGGTTCTTCCEEE
T ss_pred HHHHhcCccccccc--ccccc-cceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCC-----c-hhhcCCCCCCEEE
Confidence 34455555565432 35555 89999999999987 44445579999999999999874 2 3678899999999
Q ss_pred cccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccc
Q 041463 86 ISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSG 165 (356)
Q Consensus 86 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~ 165 (356)
+++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 99999997777778999999999999999997777778999999999999999986666667888888888888887763
Q ss_pred cCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcc
Q 041463 166 NIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNL 245 (356)
Q Consensus 166 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l 245 (356)
.+.... ..+++|+.|++++|.+
T Consensus 172 -~~~~~~---------------------------------------------------------~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 172 -LPEGVF---------------------------------------------------------DKLTQLKDLRLYQNQL 193 (272)
T ss_dssp -CCTTTT---------------------------------------------------------TTCTTCCEEECCSSCC
T ss_pred -cCHHHh---------------------------------------------------------cCCccCCEEECCCCcC
Confidence 222111 1222344466666666
Q ss_pred cccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCC
Q 041463 246 SAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIF 306 (356)
Q Consensus 246 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 306 (356)
.+..+..+..+++|++|++++|.+. +.+++|+.|+++.|.+++.+|..++.++.
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 5555555666677777777777654 23556777777777777777766665443
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=8e-25 Score=196.01 Aligned_cols=93 Identities=20% Similarity=0.220 Sum_probs=64.7
Q ss_pred cccccccEEeecCCccc----ccCchhhhcccccCeEEccCCcCcCC----CCcCc--CCCCCccEEEccCCcccc----
Q 041463 230 TTLYLVNLLDLSSTNLS----AEIPAELTSLVHLGTLNLSHNHLVGK----IPEEI--GNFEWLETLDLSKNKLSG---- 295 (356)
Q Consensus 230 ~~~~~L~~L~L~~~~l~----~~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~--~~~~~L~~L~L~~n~i~~---- 295 (356)
..+++|+.|+|++|.++ ..++..+..+++|++|++++|.+++. ++..+ +.+++|++|+|++|.+++
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 44556666888888775 34556677778888888888887643 34444 337788888888888875
Q ss_pred cCCccc-cCcCCCCEEEcccCcccccCC
Q 041463 296 SIPPSM-ASLIFMNHLNLSYNNLSGEIP 322 (356)
Q Consensus 296 ~~~~~~-~~l~~L~~L~l~~n~~~~~~~ 322 (356)
.++..+ .++++|+.|++++|++++..+
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 255555 457888888888888876654
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.5e-23 Score=182.78 Aligned_cols=253 Identities=19% Similarity=0.151 Sum_probs=159.7
Q ss_pred CcEeeccCCccCCcCCCCC-CC--CCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccc-ccccccCCCCC
Q 041463 30 LDELDVAYNELRGRVPNSL-GF--NFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE-IPLLFSNSSFL 105 (356)
Q Consensus 30 L~~L~l~~~~~~~~~~~~~-~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~~~~~l~~L 105 (356)
++.++++++.+.. ..+ .+ +.++.|++++|.+.+..+ .+..+++|++|++++|.+.+. .+..+..+++|
T Consensus 49 ~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~-----~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 49 WQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLA-----EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp SSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCC-----SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred heeeccccccCCH---HHHHhhhhccceEEEcCCccccccch-----hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 5666666655441 111 22 566666666666654322 234566777777777766543 55556667777
Q ss_pred cEEEcccCcccccccccccCCCCCcEEEeecc-ccccc-cCccccCCCCCcEEEecCC-cccccCCchhhcccccceeEE
Q 041463 106 YILDMSNNSLSGSIPESIGSLRTLRFLVLRNN-YLSGE-LPLSLKNCTFMESLDLGDN-NLSGNIPAWIGASMPGLLHIL 182 (356)
Q Consensus 106 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~L~~L 182 (356)
++|++++|.+.+..+..+..+++|++|++++| .+++. ++..+..+++|+.|++++| .+++.........++..|+.|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 77777777666556666666777777777777 45532 4444666777777777777 665331122223344137777
Q ss_pred EcccCc--ccc-cCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCc-ccccCchhhhcccc
Q 041463 183 DLSHND--LSG-FIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTN-LSAEIPAELTSLVH 258 (356)
Q Consensus 183 ~l~~~~--l~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~ 258 (356)
++++|. +.. .++ ..+..+++|+.|++++|. +++..+..+..+++
T Consensus 201 ~l~~~~~~~~~~~l~--------------------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 201 NLSGYRKNLQKSDLS--------------------------------TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp ECCSCGGGSCHHHHH--------------------------------HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred EeCCCcccCCHHHHH--------------------------------HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 777773 321 111 123456678889999998 66666778888899
Q ss_pred cCeEEccCCc-CcCCCCcCcCCCCCccEEEccCCcccccCCccccCc-CCCCEEEcccCcccccCCCCcc
Q 041463 259 LGTLNLSHNH-LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASL-IFMNHLNLSYNNLSGEIPNTNQ 326 (356)
Q Consensus 259 L~~L~L~~n~-i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~ 326 (356)
|++|++++|. +.+.....+..+++|++|++++| +++. .+..+ ..+..|++++|++++..|...+
T Consensus 249 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 249 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 9999999995 43333335778999999999999 5432 23333 3477778999999998887733
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1e-23 Score=185.30 Aligned_cols=151 Identities=17% Similarity=0.141 Sum_probs=75.0
Q ss_pred ceEEEcccccccccCCchHHhh-ccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463 5 LRTLVLNKARISDTIPDWFWQL-SLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT 83 (356)
Q Consensus 5 L~~L~l~~~~i~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 83 (356)
+++++++++.+.. ..+..+ .++++.|++.+|.+.+..+..+.+++|++|++++|.+.+. .++..+..+++|++
T Consensus 49 ~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH---HHHHHHTTBCCCSE
T ss_pred heeeccccccCCH---HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH---HHHHHHhhCCCCCE
Confidence 4455555555441 222221 1455555555555555544444555555555555554321 02234445555555
Q ss_pred EecccccccccccccccCCCCCcEEEcccC-ccccc-ccccccCCCCCcEEEeecc-ccccc-cCccccCCC-CCcEEEe
Q 041463 84 LVISNNNLSGEIPLLFSNSSFLYILDMSNN-SLSGS-IPESIGSLRTLRFLVLRNN-YLSGE-LPLSLKNCT-FMESLDL 158 (356)
Q Consensus 84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~l~~l~-~L~~L~l 158 (356)
|++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 555555555444455555555555555555 34321 3333444555555555555 55432 233445555 5555555
Q ss_pred cCC
Q 041463 159 GDN 161 (356)
Q Consensus 159 ~~~ 161 (356)
++|
T Consensus 203 ~~~ 205 (336)
T 2ast_B 203 SGY 205 (336)
T ss_dssp CSC
T ss_pred CCC
Confidence 555
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=2.3e-21 Score=161.80 Aligned_cols=85 Identities=21% Similarity=0.171 Sum_probs=46.4
Q ss_pred cccEEecccccccccccccccCCCCCcEEEcccCc-ccccccccccCCCCCcEEEeec-cccccccCccccCCCCCcEEE
Q 041463 80 QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS-LSGSIPESIGSLRTLRFLVLRN-NYLSGELPLSLKNCTFMESLD 157 (356)
Q Consensus 80 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~ 157 (356)
++++|++++|.+++..+..|..+++|++|++++|. +....+..|..+++|++|++++ |.++...+..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444455555566666666554 5544444555555666666655 555533344455555555555
Q ss_pred ecCCccc
Q 041463 158 LGDNNLS 164 (356)
Q Consensus 158 l~~~~l~ 164 (356)
+++|.+.
T Consensus 112 l~~n~l~ 118 (239)
T 2xwt_C 112 IFNTGLK 118 (239)
T ss_dssp EEEECCC
T ss_pred CCCCCCc
Confidence 5555544
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.5e-21 Score=162.99 Aligned_cols=196 Identities=15% Similarity=0.162 Sum_probs=156.9
Q ss_pred CCCcEEEcccCcccccccccccCCCCCcEEEeeccc-cccccCccccCCCCCcEEEecC-CcccccCCchhhccccccee
Q 041463 103 SFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNY-LSGELPLSLKNCTFMESLDLGD-NNLSGNIPAWIGASMPGLLH 180 (356)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~~~L~ 180 (356)
++|++|++++|.+....+..+..+++|++|++++|. ++...+..+..+++|+.|++++ |.+. .++......++. |+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~-L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPL-LK 108 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTT-CC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCC-CC
Confidence 489999999999997777789999999999999997 8866666889999999999998 8887 444433344544 99
Q ss_pred EEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCC-cccccCchhhhccccc
Q 041463 181 ILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSST-NLSAEIPAELTSLVHL 259 (356)
Q Consensus 181 ~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~L 259 (356)
.|++++|.+.+ +|. +..+++|+ .|+.|++++| .+.+..+..|..+++|
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~-----------------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L 157 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTD-----------------------------IFFILEITDNPYMTSIPVNAFQGLCNE 157 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCC-----------------------------SEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred EEeCCCCCCcc-ccc-cccccccc-----------------------------cccEEECCCCcchhhcCcccccchhcc
Confidence 99999998874 343 43333322 2447999999 8987777789999999
Q ss_pred C-eEEccCCcCcCCCCcCcCCCCCccEEEccCCc-ccccCCccccCc-CCCCEEEcccCcccccCCCCcccCcCCCcc
Q 041463 260 G-TLNLSHNHLVGKIPEEIGNFEWLETLDLSKNK-LSGSIPPSMASL-IFMNHLNLSYNNLSGEIPNTNQFQTLNDPS 334 (356)
Q Consensus 260 ~-~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~l~~l~~~~ 334 (356)
+ +|++++|.++...+..+.. ++|++|++++|+ +++..+..|.++ ++|++|++++|++++.++. .++.|+.++
T Consensus 158 ~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~ 232 (239)
T 2xwt_C 158 TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELI 232 (239)
T ss_dssp EEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEE
T ss_pred eeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceee
Confidence 9 9999999998333334444 899999999995 987777889999 9999999999999976655 577777766
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=9e-23 Score=177.10 Aligned_cols=97 Identities=24% Similarity=0.335 Sum_probs=55.4
Q ss_pred cccEEeecCCcccccCc--h-hhhcccccCeEEccCCcCcCCCCcCcCCC---CCccEEEccCCcccccCCccccCcCCC
Q 041463 234 LVNLLDLSSTNLSAEIP--A-ELTSLVHLGTLNLSHNHLVGKIPEEIGNF---EWLETLDLSKNKLSGSIPPSMASLIFM 307 (356)
Q Consensus 234 ~L~~L~L~~~~l~~~~~--~-~~~~~~~L~~L~L~~n~i~~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L 307 (356)
+|+.|++++|.++.... . .+..+++|++|++++|.+.+..|..+..+ ++|++|++++|+++ .+|..+. ++|
T Consensus 198 ~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L 274 (310)
T 4glp_A 198 AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKL 274 (310)
T ss_dssp CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCC
T ss_pred CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCC
Confidence 44446666666652111 1 23455666777777776665545555444 56777777777666 4444442 566
Q ss_pred CEEEcccCcccccCCCCcccCcCCCcc
Q 041463 308 NHLNLSYNNLSGEIPNTNQFQTLNDPS 334 (356)
Q Consensus 308 ~~L~l~~n~~~~~~~~~~~l~~l~~~~ 334 (356)
++|++++|++++. |....++.|+.++
T Consensus 275 ~~L~Ls~N~l~~~-~~~~~l~~L~~L~ 300 (310)
T 4glp_A 275 RVLDLSSNRLNRA-PQPDELPEVDNLT 300 (310)
T ss_dssp SCEECCSCCCCSC-CCTTSCCCCSCEE
T ss_pred CEEECCCCcCCCC-chhhhCCCccEEE
Confidence 6777777766654 3345556666555
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=3.8e-21 Score=169.69 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=42.7
Q ss_pred ccEEeecCCcccccCchhhhcccccCeEEccC-CcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSH-NHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS 313 (356)
Q Consensus 235 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 313 (356)
++.|++++|.++...+..|. ..+|+++.+.+ |.++...++.|..+++|++|++++|+++...+.. +.+|+.|.+.
T Consensus 156 l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l 231 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRAR 231 (350)
T ss_dssp CEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECT
T ss_pred hhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhc
Confidence 33455555555533333332 24455555543 3344222234455555555555555555222222 2334444444
Q ss_pred cCcccccCCCCcccCcCCCcc
Q 041463 314 YNNLSGEIPNTNQFQTLNDPS 334 (356)
Q Consensus 314 ~n~~~~~~~~~~~l~~l~~~~ 334 (356)
++.-...+|.+..++.|+.++
T Consensus 232 ~~~~l~~lP~l~~l~~L~~l~ 252 (350)
T 4ay9_X 232 STYNLKKLPTLEKLVALMEAS 252 (350)
T ss_dssp TCTTCCCCCCTTTCCSCCEEE
T ss_pred cCCCcCcCCCchhCcChhhCc
Confidence 444444445555555554443
No 85
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=1.1e-23 Score=199.20 Aligned_cols=327 Identities=14% Similarity=0.071 Sum_probs=195.6
Q ss_pred cccceEEEcccccccccCCch---HHhhccCCcEeeccCCccCCcC----CCCC-CCCCCcEEecCCCcccCcCC-----
Q 041463 2 QTELRTLVLNKARISDTIPDW---FWQLSLTLDELDVAYNELRGRV----PNSL-GFNFPATVDLSSNNFEGRLP----- 68 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~----~~~~-~~~~L~~L~l~~n~~~~~~~----- 68 (356)
+++|++|+|++|.+++....+ +...+++|++|++++|.+.+.. +..+ ++++|++|++++|.+.+ ++
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 678999999999887653332 2233488999999888876222 2222 47888888888887652 11
Q ss_pred ------------------CCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCccccccc-ccccCCCCC
Q 041463 69 ------------------LCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP-ESIGSLRTL 129 (356)
Q Consensus 69 ------------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L 129 (356)
...+..+..+++|+.+++.++... ..+..+..+++|++|++++|.+.+... ..+..+++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 011123334445555555443222 455566677888888888887654333 335677888
Q ss_pred cEEEeeccccccccCccccCCCCCcEEEecC-----------CcccccCCchhhcccccceeEEEcccCcccccCCCCcC
Q 041463 130 RFLVLRNNYLSGELPLSLKNCTFMESLDLGD-----------NNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVG 198 (356)
Q Consensus 130 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-----------~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 198 (356)
++|+++++-....++.....+++|+.|++++ +.+++.....+...++. |+.|++..+.+++..+..+.
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE-LEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT-CSEEEEEESCCCHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc-CeEEEeecCCccHHHHHHHH
Confidence 8888874322222333345677888888883 34443222232333443 88888877766544333333
Q ss_pred C-CCCCcccCCCCC---ccCCCeeeeecCCccccccccccccEEeecCCc--ccccCchhhh-cccccCeEEccCCcCcC
Q 041463 199 N-LSDMKVEPPKSV---QHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTN--LSAEIPAELT-SLVHLGTLNLSHNHLVG 271 (356)
Q Consensus 199 ~-l~~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~~~-~~~~L~~L~L~~n~i~~ 271 (356)
. +++|+.+..... ...+.... .......+..+++|+.|+++.|. +.+.....+. .+++|++|++++|.+++
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~--~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPL--DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCC--HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred hhCCCCcEEEEeecCCCccccCchH--HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 2 444443222110 00100000 00012235568899999997654 5544444443 37899999999999875
Q ss_pred C-CCcCcCCCCCccEEEccCCccccc-CCccccCcCCCCEEEcccCcccccCCC-C-cccCcCCCc
Q 041463 272 K-IPEEIGNFEWLETLDLSKNKLSGS-IPPSMASLIFMNHLNLSYNNLSGEIPN-T-NQFQTLNDP 333 (356)
Q Consensus 272 ~-~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~-~-~~l~~l~~~ 333 (356)
. ++..+..+++|++|++++|.+++. .+..+..+++|++|++++|+++..-.. + ..++.++..
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEE
T ss_pred HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEE
Confidence 3 344557889999999999998754 344456789999999999998865222 2 445555543
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=7.9e-21 Score=159.69 Aligned_cols=184 Identities=21% Similarity=0.205 Sum_probs=111.6
Q ss_pred cccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEec
Q 041463 80 QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLG 159 (356)
Q Consensus 80 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 159 (356)
..++++++++.++ .+|..+. +.+++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4556666666665 3343332 456666666666665555556666666666666666654444445555566666665
Q ss_pred CCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEe
Q 041463 160 DNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLD 239 (356)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 239 (356)
+|.+.+ .+ +.. +..+++|+.|+
T Consensus 92 ~n~l~~-~~-------------------------~~~--------------------------------~~~l~~L~~L~ 113 (251)
T 3m19_A 92 NNQLAS-LP-------------------------LGV--------------------------------FDHLTQLDKLY 113 (251)
T ss_dssp TSCCCC-CC-------------------------TTT--------------------------------TTTCTTCCEEE
T ss_pred CCcccc-cC-------------------------hhH--------------------------------hcccCCCCEEE
Confidence 555542 11 111 12333455566
Q ss_pred ecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463 240 LSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 240 L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
+++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 66666665555556667777777777777775545567777777777777777776566667777777777777777766
Q ss_pred cCCCC
Q 041463 320 EIPNT 324 (356)
Q Consensus 320 ~~~~~ 324 (356)
..+..
T Consensus 194 ~~~~~ 198 (251)
T 3m19_A 194 SRCEI 198 (251)
T ss_dssp TSTTH
T ss_pred Ccccc
Confidence 54444
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=7e-24 Score=189.86 Aligned_cols=265 Identities=17% Similarity=0.151 Sum_probs=186.1
Q ss_pred cCCchHHhhccCCcEeeccCCccCCcCC----CCC-CCCCCcEEecCCCcccCcCCCCCCcc-------cCCcccccEEe
Q 041463 18 TIPDWFWQLSLTLDELDVAYNELRGRVP----NSL-GFNFPATVDLSSNNFEGRLPLCIPKS-------IGNLKQLITLV 85 (356)
Q Consensus 18 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~-------~~~l~~L~~L~ 85 (356)
.++..+..+ ++|++|++++|.+....+ ..+ .+++|++|++++|.+.. +...+|.. +..+++|++|+
T Consensus 23 ~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~-l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 23 SVFAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR-VKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp TTSHHHHHC-SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS-CGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHhcC-CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc-cccchhHHHHHHHHHHhhCCcccEEE
Confidence 355666666 899999999998886432 223 58999999999975431 11122233 36789999999
Q ss_pred cccccccc----cccccccCCCCCcEEEcccCccccccccccc----CC---------CCCcEEEeecccccc-ccC---
Q 041463 86 ISNNNLSG----EIPLLFSNSSFLYILDMSNNSLSGSIPESIG----SL---------RTLRFLVLRNNYLSG-ELP--- 144 (356)
Q Consensus 86 l~~~~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~l---------~~L~~L~l~~~~l~~-~~~--- 144 (356)
+++|.+.. .++..+..+++|++|++++|.+....+..+. .+ ++|++|++++|.++. ..+
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99999986 3666788899999999999998754443333 33 899999999999873 333
Q ss_pred ccccCCCCCcEEEecCCcccccC----Cc-hhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeee
Q 041463 145 LSLKNCTFMESLDLGDNNLSGNI----PA-WIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRV 219 (356)
Q Consensus 145 ~~l~~l~~L~~L~l~~~~l~~~~----~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~ 219 (356)
..+..+++|+.|++++|.+.... .. .+ ..++ .|+.|++++|.+.......
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l-~~~~-~L~~L~Ls~n~l~~~g~~~----------------------- 235 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-AYCQ-ELKVLDLQDNTFTHLGSSA----------------------- 235 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG-GGCT-TCCEEECCSSCCHHHHHHH-----------------------
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh-hcCC-CccEEECcCCCCCcHHHHH-----------------------
Confidence 35678889999999999886321 11 22 2233 3999999999875210000
Q ss_pred eecCCccccccccccccEEeecCCccccc----Cchhhhc--ccccCeEEccCCcCcC----CCCcCc-CCCCCccEEEc
Q 041463 220 VTKGSERKYFTTLYLVNLLDLSSTNLSAE----IPAELTS--LVHLGTLNLSHNHLVG----KIPEEI-GNFEWLETLDL 288 (356)
Q Consensus 220 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~--~~~L~~L~L~~n~i~~----~~~~~~-~~~~~L~~L~L 288 (356)
.+..+..+++|+.|+|++|.+.+. ++..+.. +++|++|++++|.+++ .+|..+ ..+++|++|++
T Consensus 236 -----l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 236 -----LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp -----HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred -----HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 112345667788899999999865 3455533 8999999999999986 366666 56899999999
Q ss_pred cCCcccccCC--ccc-cCcCCCCEEEccc
Q 041463 289 SKNKLSGSIP--PSM-ASLIFMNHLNLSY 314 (356)
Q Consensus 289 ~~n~i~~~~~--~~~-~~l~~L~~L~l~~ 314 (356)
++|++++..+ ..+ ..++.++.+++..
T Consensus 311 ~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 311 NGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp TTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred cCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 9999996653 222 2355555555543
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=5.5e-23 Score=182.32 Aligned_cols=261 Identities=19% Similarity=0.181 Sum_probs=192.7
Q ss_pred EeeccCCccCCcCCCCCCCC-CCcEEecCCCcccCcCCCCCCcccCCcc-cccEEecccccccccccccccCC-----CC
Q 041463 32 ELDVAYNELRGRVPNSLGFN-FPATVDLSSNNFEGRLPLCIPKSIGNLK-QLITLVISNNNLSGEIPLLFSNS-----SF 104 (356)
Q Consensus 32 ~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~l-----~~ 104 (356)
.+.++.+.+++.++.+...+ +|++|++++|.+++..+..+...+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35778888888777777654 5999999999988533222225677788 89999999999987766666664 99
Q ss_pred CcEEEcccCccccccccc----ccCC-CCCcEEEeeccccccccCccc----cC-CCCCcEEEecCCcccccCCchhhcc
Q 041463 105 LYILDMSNNSLSGSIPES----IGSL-RTLRFLVLRNNYLSGELPLSL----KN-CTFMESLDLGDNNLSGNIPAWIGAS 174 (356)
Q Consensus 105 L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~l~~~~~~~l----~~-l~~L~~L~l~~~~l~~~~~~~~~~~ 174 (356)
|++|++++|.+.+..+.. +... ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+.....+...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998666553 3344 799999999999986544443 33 3699999999999885444443222
Q ss_pred ---cccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCcccccccc-ccccEEeecCCccccc--
Q 041463 175 ---MPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTL-YLVNLLDLSSTNLSAE-- 248 (356)
Q Consensus 175 ---~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~l~~~-- 248 (356)
.+..++.|++++|.+.+..+..+. ..+... ++|+.|++++|.+.+.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~----------------------------~~l~~~~~~L~~L~Ls~N~i~~~~~ 213 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELA----------------------------KFLASIPASVTSLDLSANLLGLKSY 213 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHH----------------------------HHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred HhcCCccccEeeecCCCCchhhHHHHH----------------------------HHHHhCCCCCCEEECCCCCCChhHH
Confidence 233599999999988644322211 123344 4899999999999864
Q ss_pred --Cchhhhc-ccccCeEEccCCcCcCCCC----cCcCCCCCccEEEccCCccccc-------CCccccCcCCCCEEEccc
Q 041463 249 --IPAELTS-LVHLGTLNLSHNHLVGKIP----EEIGNFEWLETLDLSKNKLSGS-------IPPSMASLIFMNHLNLSY 314 (356)
Q Consensus 249 --~~~~~~~-~~~L~~L~L~~n~i~~~~~----~~~~~~~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~l~~ 314 (356)
++..+.. .++|++|++++|.+++..+ ..+..+++|++|++++|.+.+. ++..+..+++|++||+++
T Consensus 214 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 214 AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 3444544 3599999999999986543 3457789999999999995432 334567788999999999
Q ss_pred Cccccc
Q 041463 315 NNLSGE 320 (356)
Q Consensus 315 n~~~~~ 320 (356)
|++...
T Consensus 294 N~l~~~ 299 (362)
T 3goz_A 294 KEIHPS 299 (362)
T ss_dssp CBCCGG
T ss_pred CcCCCc
Confidence 999866
No 89
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=1.1e-24 Score=206.14 Aligned_cols=134 Identities=10% Similarity=0.066 Sum_probs=79.9
Q ss_pred cccceEEEcccccccccCCchHHhhccC-CcEeeccCCc-cCCc-CCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCC
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLT-LDELDVAYNE-LRGR-VPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGN 77 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~-L~~L~l~~~~-~~~~-~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 77 (356)
+++|++|+|++|.+++..+..+...++. |++|++.+|. +... ..... ++++|++|++++|.+++.....++..+..
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 4677888888887766555556554455 8888887775 2111 11111 46788888888887654321112223445
Q ss_pred cccccEEecccccccc----cccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeec
Q 041463 78 LKQLITLVISNNNLSG----EIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRN 136 (356)
Q Consensus 78 l~~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 136 (356)
+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+ .+..+..+++|++|.++.
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence 6777777777777652 233445567777888777776653 334455555666665543
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=9e-21 Score=164.14 Aligned_cols=126 Identities=20% Similarity=0.326 Sum_probs=79.3
Q ss_pred CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCC
Q 041463 49 GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRT 128 (356)
Q Consensus 49 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 128 (356)
.+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++
T Consensus 39 ~l~~L~~L~l~~~~i~~-----l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~ 108 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-----IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQS 108 (308)
T ss_dssp HHHTCCEEECTTSCCCC-----CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTT
T ss_pred HcCCcCEEEeeCCCccC-----ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCC
Confidence 46778888888877662 22 46667778888888777764433 67777777777777777643 24666777
Q ss_pred CcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCccc
Q 041463 129 LRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLS 190 (356)
Q Consensus 129 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~ 190 (356)
|++|++++|.+++ ++ .+..+++|+.|++++|.+.+. +. + ..++. |+.|++++|.+.
T Consensus 109 L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l-~~l~~-L~~L~l~~n~l~ 164 (308)
T 1h6u_A 109 IKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-L-AGLTN-LQYLSIGNAQVS 164 (308)
T ss_dssp CCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-G-GGCTT-CCEEECCSSCCC
T ss_pred CCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-c-cCCCC-ccEEEccCCcCC
Confidence 7777777777763 22 366667777777777766522 21 1 11222 555555555443
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=169.68 Aligned_cols=235 Identities=20% Similarity=0.193 Sum_probs=171.5
Q ss_pred CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccc--cCCCCCcEEEcccCccccccc----cc
Q 041463 49 GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLF--SNSSFLYILDMSNNSLSGSIP----ES 122 (356)
Q Consensus 49 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~ 122 (356)
....++.+.+.++.+....-..+. .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+....+ ..
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGAL-RVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHH-HHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHH-HhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 445678888888766421000000 12235679999999999887887777 889999999999999885433 33
Q ss_pred ccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccccc--C-CchhhcccccceeEEEcccCcccccCCCCcCC
Q 041463 123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGN--I-PAWIGASMPGLLHILDLSHNDLSGFIPPRVGN 199 (356)
Q Consensus 123 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~--~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 199 (356)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. . +......++. |+.|++++|.++.. +...
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~l-~~~~-- 216 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPA-IQNLALRNTGMETP-TGVC-- 216 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCC-CCSCBCCSSCCCCH-HHHH--
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCC-CCEEECCCCCCCch-HHHH--
Confidence 45688999999999999877778888999999999999986532 1 1121123443 89999999987521 1110
Q ss_pred CCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcc---cccCeEEccCCcCcCCCCcC
Q 041463 200 LSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSL---VHLGTLNLSHNHLVGKIPEE 276 (356)
Q Consensus 200 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~ 276 (356)
...+..+++|+.|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..
T Consensus 217 --------------------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~ 269 (310)
T 4glp_A 217 --------------------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG 269 (310)
T ss_dssp --------------------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC
T ss_pred --------------------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh
Confidence 0112455667779999999987766666555 69999999999999 67776
Q ss_pred cCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463 277 IGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 277 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
+. ++|++|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 270 ~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 270 LP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred hc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 64 7999999999999943 43 6788999999999999874
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.1e-20 Score=157.08 Aligned_cols=115 Identities=22% Similarity=0.272 Sum_probs=96.8
Q ss_pred ccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEE
Q 041463 231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHL 310 (356)
Q Consensus 231 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 310 (356)
.+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 34456669999999987777888999999999999999996666678899999999999999997777789999999999
Q ss_pred EcccCcccccCCCC-cccCcCCCccccccCccccCCCCCCC-CC
Q 041463 311 NLSYNNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKK-CP 352 (356)
Q Consensus 311 ~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~-c~ 352 (356)
++++|++++.++.. ..++.|+.++ +.||||.|+ |+
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~-------l~~N~~~c~~~~ 197 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTIT-------LFGNQFDCSRCE 197 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEE-------CCSCCBCTTSTT
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEE-------eeCCceeCCccc
Confidence 99999999888754 6777777655 456788888 54
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=4.7e-20 Score=159.65 Aligned_cols=124 Identities=18% Similarity=0.248 Sum_probs=72.6
Q ss_pred cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463 28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 107 (356)
++|++|++.+|.++. .+....+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+. ..+..+++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~~~~~l~~L~~L~L~~n~i~~-----~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQITD-----LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCC-----CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred CCcCEEEeeCCCccC-chhhhccCCCCEEEccCCcCCC-----Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 566666666666653 3333346666666666666652 222 55666666666666666532 24556666666
Q ss_pred EEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463 108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS 164 (356)
Q Consensus 108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 164 (356)
|++++|.+... + .+..+++|++|++++|.+++. +. +..+++|+.|++++|.+.
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCC
Confidence 66666666533 2 255666666666666666532 21 556666666666666654
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=3e-23 Score=196.28 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=66.5
Q ss_pred cccceEEEcccccccccCCchHHhhccCCcEeeccCC-ccCCc-CCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCc
Q 041463 2 QTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYN-ELRGR-VPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNL 78 (356)
Q Consensus 2 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 78 (356)
+++|++|+++++.+++..+..+...+++|++|++.+| .++.. .+... ++++|++|++++|.+++..+..++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 4567777777777766555555533477888888777 33321 22222 477788888887776654332333344456
Q ss_pred ccccEEeccccc--cccc-ccccccCCCCCcEEEcccC
Q 041463 79 KQLITLVISNNN--LSGE-IPLLFSNSSFLYILDMSNN 113 (356)
Q Consensus 79 ~~L~~L~l~~~~--i~~~-~~~~~~~l~~L~~L~l~~~ 113 (356)
++|++|++++|. +... ....+..+++|++|++++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 777777777775 2111 1222344577777777766
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=5.1e-19 Score=155.99 Aligned_cols=240 Identities=21% Similarity=0.170 Sum_probs=136.9
Q ss_pred eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccE-
Q 041463 6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT- 83 (356)
Q Consensus 6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~- 83 (356)
++++.++++++ .+|..+. +++++|+|++|.++...+.++ ++++|++|+|++|.+.+.++ +..|..++++++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~---~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE---ADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC---TTSBCSCTTCCEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC---hhHhhcchhhhhh
Confidence 45666667776 4565442 567777777777775555555 47777777777777654333 134566666654
Q ss_pred EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeecc-ccccccCccccCCC-CCcEEEecCC
Q 041463 84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNN-YLSGELPLSLKNCT-FMESLDLGDN 161 (356)
Q Consensus 84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~l~~l~-~L~~L~l~~~ 161 (356)
+.+..|.+....+..|..+++|++|++++|.+....+..+....++..+++.++ .+....+..+..+. .++.|++++|
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 445556666555666777777777777777776555545555556666666553 44433333444443 4666777777
Q ss_pred cccccCCchhhcccccceeEEEcccC-cccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEee
Q 041463 162 NLSGNIPAWIGASMPGLLHILDLSHN-DLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDL 240 (356)
Q Consensus 162 ~l~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 240 (356)
.+. .++..++.... ++.+++.++ .++ .+|. ..|..+++|+.|++
T Consensus 165 ~i~-~i~~~~f~~~~--L~~l~l~~~n~l~-~i~~-------------------------------~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 165 GIQ-EIHNSAFNGTQ--LDELNLSDNNNLE-ELPN-------------------------------DVFHGASGPVILDI 209 (350)
T ss_dssp CCC-EECTTSSTTEE--EEEEECTTCTTCC-CCCT-------------------------------TTTTTEECCSEEEC
T ss_pred ccc-CCChhhccccc--hhHHhhccCCccc-CCCH-------------------------------HHhccCcccchhhc
Confidence 766 34443333222 666666543 333 2221 12344455556777
Q ss_pred cCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCC
Q 041463 241 SSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKN 291 (356)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n 291 (356)
++|.++...+.. +.+|++|.+.++.-...+| .+..+++|+.+++.++
T Consensus 210 s~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 210 SRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 777776433322 3455555555544222455 3556667777777654
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=2.9e-22 Score=189.46 Aligned_cols=310 Identities=13% Similarity=0.077 Sum_probs=156.2
Q ss_pred cccceEEEcccc-cccccCCchHHhhccCCcEeeccCCccCCcCCCCC-----CCCCCcEEecCCCcccCcCC-CCCCcc
Q 041463 2 QTELRTLVLNKA-RISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-----GFNFPATVDLSSNNFEGRLP-LCIPKS 74 (356)
Q Consensus 2 l~~L~~L~l~~~-~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~-~~~~~~ 74 (356)
+++|++|++.+| .+++.....+...+++|++|++++|.+++.....+ .+++|++|++++|. . .++ ..+...
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l 206 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERL 206 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHH
Confidence 578999999998 56543233344334899999999998765433222 57799999999886 1 111 011112
Q ss_pred cCCcccccEEecccc-cccccccccccCCC--------------------------------------------------
Q 041463 75 IGNLKQLITLVISNN-NLSGEIPLLFSNSS-------------------------------------------------- 103 (356)
Q Consensus 75 ~~~l~~L~~L~l~~~-~i~~~~~~~~~~l~-------------------------------------------------- 103 (356)
+..+++|++|++++| .+. ..+..+..++
T Consensus 207 ~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~ 285 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY 285 (594)
T ss_dssp HHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGH
T ss_pred HHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHH
Confidence 234577888888776 222 1333333444
Q ss_pred ----CCcEEEcccCccccccc-ccccCCCCCcEEEeeccccccc-cCccccCCCCCcEEEecC---------CcccccCC
Q 041463 104 ----FLYILDMSNNSLSGSIP-ESIGSLRTLRFLVLRNNYLSGE-LPLSLKNCTFMESLDLGD---------NNLSGNIP 168 (356)
Q Consensus 104 ----~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~---------~~l~~~~~ 168 (356)
+|++|++++|.+.+... ..+..+++|++|.+++| +.+. ++.....+++|+.|++.+ +.+++...
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 44444444444332111 11233444444444444 2111 111112344455555422 12221111
Q ss_pred chhhcccccceeEEEcccCcccccCCCCcC-CCCCCcccCCC-----CCccCCCeeeeecCCccccccccccccEEeecC
Q 041463 169 AWIGASMPGLLHILDLSHNDLSGFIPPRVG-NLSDMKVEPPK-----SVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSS 242 (356)
Q Consensus 169 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 242 (356)
..+...++. |+.|.+..+.+++.....+. .+++|+.+... .....+.... .......+..+++|+.|++++
T Consensus 365 ~~l~~~~~~-L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~--~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 365 VSVSMGCPK-LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL--DIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHCTT-CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT--HHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHhchh-HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch--hhHHHHHHhhCCCccEEeecC
Confidence 111111222 55554444444322111111 12222221111 0000000000 000111245667888888876
Q ss_pred CcccccCchhhhc-ccccCeEEccCCcCcCCCCcCc-CCCCCccEEEccCCcccccCCc-cccCcCCCCEEEcccCcccc
Q 041463 243 TNLSAEIPAELTS-LVHLGTLNLSHNHLVGKIPEEI-GNFEWLETLDLSKNKLSGSIPP-SMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 243 ~~l~~~~~~~~~~-~~~L~~L~L~~n~i~~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~l~~n~~~~ 319 (356)
.+++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|++|++++|+++.
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 555444444444 6788888888888765443333 5578888888888888654333 44557888888888888753
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=147.30 Aligned_cols=157 Identities=20% Similarity=0.201 Sum_probs=112.7
Q ss_pred CcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCC
Q 041463 129 LRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPP 208 (356)
Q Consensus 129 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~ 208 (356)
-+.++++++.++ .+|..+. ..++.|++++|.+.+..+......++. |+.|++++|.+.+..+..+.
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~-L~~L~L~~N~i~~i~~~~~~---------- 78 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQ-LRKINFSNNKITDIEEGAFE---------- 78 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTT-CCEEECCSSCCCEECTTTTT----------
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCC-CCEEECCCCcCCEECHHHhC----------
Confidence 357888888877 4565442 356788888888875444443343444 88888888877654443333
Q ss_pred CCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEc
Q 041463 209 KSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDL 288 (356)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L 288 (356)
.+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|+|
T Consensus 79 ----------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 79 ----------------------GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp ----------------------TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred ----------------------CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 3445555888888888777777888888888888888888666777888888888888
Q ss_pred cCCcccccCCccccCcCCCCEEEcccCcccccC
Q 041463 289 SKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEI 321 (356)
Q Consensus 289 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 321 (356)
++|++++..|..|..+++|+.|++++|++.+..
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 888888766778888888888888888887553
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.8e-19 Score=146.94 Aligned_cols=111 Identities=23% Similarity=0.257 Sum_probs=57.2
Q ss_pred ccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEccc
Q 041463 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSY 314 (356)
Q Consensus 235 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 314 (356)
|+.|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus 58 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence 34455555555544455555555555555555555533333445555555555555555544455555555555555555
Q ss_pred CcccccCCCC-cccCcCCCccccccCccccCCCCCCCCC
Q 041463 315 NNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCP 352 (356)
Q Consensus 315 n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~ 352 (356)
|++++..+.. ..++.|+.++ +.+|||.|+|+
T Consensus 138 N~l~~~~~~~~~~l~~L~~L~-------L~~N~~~c~c~ 169 (220)
T 2v9t_B 138 NKLQTIAKGTFSPLRAIQTMH-------LAQNPFICDCH 169 (220)
T ss_dssp SCCSCCCTTTTTTCTTCCEEE-------CCSSCEECSGG
T ss_pred CcCCEECHHHHhCCCCCCEEE-------eCCCCcCCCCc
Confidence 5555554432 3344444332 23455555554
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.1e-18 Score=142.41 Aligned_cols=180 Identities=21% Similarity=0.189 Sum_probs=148.3
Q ss_pred eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEE
Q 041463 6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITL 84 (356)
Q Consensus 6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 84 (356)
+.++..++.++ .+|..+. ++|++|++++|.+++..+..+ .+++|++|++++|.+++ ++ +..|..+++|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~---~~~~~~l~~L~~L 81 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LP---NGVFNKLTSLTYL 81 (208)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CC---TTTTTTCTTCCEE
T ss_pred CEEEecCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cC---hhhcCCCCCcCEE
Confidence 46777888776 4554442 689999999999997776666 69999999999999874 22 3457889999999
Q ss_pred ecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463 85 VISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS 164 (356)
Q Consensus 85 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 164 (356)
++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 99999998776777899999999999999999777777889999999999999999666666889999999999999876
Q ss_pred ccCCchhhcccccceeEEEcccCcccccCCCCcCCCCC
Q 041463 165 GNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSD 202 (356)
Q Consensus 165 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~ 202 (356)
+.. + .++.|++..+.+.+.+|..++.+..
T Consensus 162 ~~~--------~-~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 CTC--------P-GIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCT--------T-TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cCC--------C-CHHHHHHHHHhCCceeeccCccccC
Confidence 432 2 2888899999998888888776654
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=1.8e-19 Score=159.54 Aligned_cols=115 Identities=26% Similarity=0.243 Sum_probs=73.9
Q ss_pred ccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccc---cCcCCCCE
Q 041463 233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSM---ASLIFMNH 309 (356)
Q Consensus 233 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~ 309 (356)
++|+.|+|++|.+....+..|..+++|++|+|++|.|.+..+..|..+++|++|+|++|++++..+..| ..+++|+.
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCE
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCE
Confidence 345557777777766556667777777777777777776666777777788888888887775444444 45777888
Q ss_pred EEcccCcccccCCCC-cccCcCCCccccccCccccCCCCCCCCC
Q 041463 310 LNLSYNNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCP 352 (356)
Q Consensus 310 L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~ 352 (356)
|+|++|++++..+.. ..++.+. ...+.+.||||.|||.
T Consensus 168 L~L~~N~l~~l~~~~~~~l~~~~-----l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 168 LDLSSNKLKKLPLTDLQKLPAWV-----KNGLYLHNNPLECDCK 206 (361)
T ss_dssp EECCSSCCCCCCHHHHHHSCHHH-----HTTEECCSSCEECCHH
T ss_pred EECCCCCCCccCHHHhhhccHhh-----cceEEecCCCccCCcC
Confidence 888888777544332 3333210 1123456688888884
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=143.48 Aligned_cols=152 Identities=22% Similarity=0.244 Sum_probs=91.5
Q ss_pred cEEEcccCcccccccccccCCCCCcEEEeeccccccccC-ccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEc
Q 041463 106 YILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELP-LSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDL 184 (356)
Q Consensus 106 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l 184 (356)
+.++++++.+. ..|..+. ..+++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..+.. ++. |+.|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-l~~-L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-ASG-VNEILL 88 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-CTT-CCEEEC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-CCC-CCEEEC
Confidence 46667776666 3343332 345677777777664433 33566777777777777766333333322 333 677777
Q ss_pred ccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEc
Q 041463 185 SHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNL 264 (356)
Q Consensus 185 ~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L 264 (356)
++|.+.+..+.. +..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus 89 s~N~l~~~~~~~--------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 89 TSNRLENVQHKM--------------------------------FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp CSSCCCCCCGGG--------------------------------GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCccCccCHhH--------------------------------hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 777665332222 233444555777777776666666666777777777
Q ss_pred cCCcCcCCCCcCcCCCCCccEEEccCCccc
Q 041463 265 SHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294 (356)
Q Consensus 265 ~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~ 294 (356)
++|.+++..|..|..+++|++|++++|.+.
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 777776555666667777777777777665
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=3.6e-18 Score=141.26 Aligned_cols=157 Identities=25% Similarity=0.285 Sum_probs=97.1
Q ss_pred CCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccC
Q 041463 128 TLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEP 207 (356)
Q Consensus 128 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~ 207 (356)
..+.++.+++.++ .+|..+. ++|+.|++++|.+.+..+..+.. ++. |+.|++++|.+....+..
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~-l~~-L~~L~L~~N~l~~i~~~~----------- 83 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDS-LIN-LKELYLGSNQLGALPVGV----------- 83 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTT-CTT-CCEEECCSSCCCCCCTTT-----------
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhC-ccC-CcEEECCCCCCCCcChhh-----------
Confidence 3556677666666 4554333 66777777777776444443322 333 777777777664322222
Q ss_pred CCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEE
Q 041463 208 PKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLD 287 (356)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~ 287 (356)
+..+++|+.|+|++|.+.+..+..|..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 84 ---------------------~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 84 ---------------------FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141 (229)
T ss_dssp ---------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred ---------------------cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence 233444555777777776555555666777777777777776 5666666677777777
Q ss_pred ccCCcccccCCccccCcCCCCEEEcccCcccccCC
Q 041463 288 LSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIP 322 (356)
Q Consensus 288 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 322 (356)
+++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 142 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 77777775555566667777777777777765544
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=5.8e-18 Score=138.00 Aligned_cols=87 Identities=21% Similarity=0.172 Sum_probs=64.9
Q ss_pred ccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEE
Q 041463 231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHL 310 (356)
Q Consensus 231 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 310 (356)
.+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. ..++.|+.|
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L 170 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYL 170 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHH
T ss_pred CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHH
Confidence 3344555777777777655666777888888888888887555556778888888888888765 345678888
Q ss_pred EcccCcccccCCCC
Q 041463 311 NLSYNNLSGEIPNT 324 (356)
Q Consensus 311 ~l~~n~~~~~~~~~ 324 (356)
+++.|++++.+|..
T Consensus 171 ~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 171 SEWINKHSGVVRNS 184 (208)
T ss_dssp HHHHHHCTTTBBCT
T ss_pred HHHHHhCCceeecc
Confidence 88888888887765
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=7.9e-18 Score=144.38 Aligned_cols=84 Identities=24% Similarity=0.340 Sum_probs=57.2
Q ss_pred cCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCc
Q 041463 75 IGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFME 154 (356)
Q Consensus 75 ~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 154 (356)
+..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ + ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 34567777888887777633 2 36677777777777777774433 6677777777777777763 2 3366677777
Q ss_pred EEEecCCccc
Q 041463 155 SLDLGDNNLS 164 (356)
Q Consensus 155 ~L~l~~~~l~ 164 (356)
.|++++|.+.
T Consensus 116 ~L~L~~n~i~ 125 (291)
T 1h6t_A 116 SLSLEHNGIS 125 (291)
T ss_dssp EEECTTSCCC
T ss_pred EEECCCCcCC
Confidence 7777777665
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1.7e-17 Score=154.02 Aligned_cols=94 Identities=30% Similarity=0.441 Sum_probs=48.1
Q ss_pred CCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcE
Q 041463 52 FPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRF 131 (356)
Q Consensus 52 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 131 (356)
+|+.|++++|.+++ +| ..+ .++|++|++++|.+. .+| ..+++|++|++++|.+.. .|. +.. +|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp----~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LP----DNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKH 124 (571)
T ss_dssp TCSEEECCSSCCSC-CC----SCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCE
T ss_pred CccEEEeCCCCCCc-cC----HhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCE
Confidence 56666666665552 22 222 245666666666655 333 234556666666655553 333 332 5555
Q ss_pred EEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463 132 LVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS 164 (356)
Q Consensus 132 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 164 (356)
|++++|.+++ +|. .+++|+.|++++|.+.
T Consensus 125 L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 125 LDVDNNQLTM-LPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred EECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence 5555555553 333 3455555555555554
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=9.7e-18 Score=135.38 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=112.7
Q ss_pred HhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCC
Q 041463 24 WQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSS 103 (356)
Q Consensus 24 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~ 103 (356)
..+ ++|++|++++|.+. .++....+++|++|++++|.+.. +..+..+++|++|++++|.+.+..+..+..++
T Consensus 41 ~~l-~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~~~------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 41 AQM-NSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HHH-HTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCCSC------CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred hhc-CCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCCCc------chhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 444 78888888888887 44444468888888888886542 23677788888888888888766777788888
Q ss_pred CCcEEEcccCcccccccccccCCCCCcEEEeeccc-cccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEE
Q 041463 104 FLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNY-LSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHIL 182 (356)
Q Consensus 104 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L 182 (356)
+|++|++++|.+.+..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+.+ .+ .+ ..++. |+.|
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l-~~l~~-L~~L 186 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GI-EDFPK-LNQL 186 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TG-GGCSS-CCEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hh-ccCCC-CCEE
Confidence 88888888888887677778888888888888887 55 344 67888888888888888764 33 22 22443 8888
Q ss_pred EcccCccc
Q 041463 183 DLSHNDLS 190 (356)
Q Consensus 183 ~l~~~~l~ 190 (356)
++++|.+.
T Consensus 187 ~l~~N~i~ 194 (197)
T 4ezg_A 187 YAFSQTIG 194 (197)
T ss_dssp EECBC---
T ss_pred EeeCcccC
Confidence 88888764
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=3e-17 Score=134.80 Aligned_cols=153 Identities=21% Similarity=0.254 Sum_probs=92.6
Q ss_pred cEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcc
Q 041463 106 YILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLS 185 (356)
Q Consensus 106 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~ 185 (356)
+.++++++.+. ..|..+. ++++.|++++|.++...+..+..+++|+.|++++|.+.+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-------------------- 70 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-------------------- 70 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--------------------
Confidence 45666666655 3343332 456666666666664444455556666666666665542
Q ss_pred cCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEcc
Q 041463 186 HNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLS 265 (356)
Q Consensus 186 ~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~ 265 (356)
..+..+. .+++|+.|+|++|.+....+..|..+++|++|+++
T Consensus 71 ------~~~~~~~--------------------------------~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 71 ------LAPDAFQ--------------------------------GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp ------ECTTTTT--------------------------------TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ------cCHHHhh--------------------------------CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 2222222 22334446666666665455556666777777777
Q ss_pred CCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463 266 HNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 266 ~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
+|.+.+..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++..
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 777775556667777777777777777776556666777777777777777654
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=1.6e-17 Score=154.25 Aligned_cols=114 Identities=28% Similarity=0.363 Sum_probs=52.7
Q ss_pred CCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463 29 TLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL 108 (356)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 108 (356)
+++.|++++|.+++ +|..+ .++|++|++++|.++ . +| ..+++|++|++++|.+++ +|. +.. +|++|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-~~~L~~L~Ls~N~l~-~----ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-PPQITVLEITQNALI-S----LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-CTTCSEEECCSSCCS-C----CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEE
T ss_pred CccEEEeCCCCCCc-cCHhH-cCCCCEEECcCCCCc-c----cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEE
Confidence 45555555555543 22221 245555555555544 1 22 123455555555555543 333 322 55555
Q ss_pred EcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463 109 DMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS 164 (356)
Q Consensus 109 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 164 (356)
++++|.+.. .|. .+++|++|++++|.+++ +|. .+++|+.|++++|.+.
T Consensus 126 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 126 DVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred ECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 555555543 222 34455555555555542 332 3344555555555544
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=8.2e-18 Score=157.78 Aligned_cols=84 Identities=24% Similarity=0.338 Sum_probs=53.1
Q ss_pred cCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCc
Q 041463 75 IGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFME 154 (356)
Q Consensus 75 ~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 154 (356)
+..+++|+.|++++|.+... + .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+ + ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence 34566677777777776532 2 36667777777777777664433 5666777777777776652 2 2566666666
Q ss_pred EEEecCCccc
Q 041463 155 SLDLGDNNLS 164 (356)
Q Consensus 155 ~L~l~~~~l~ 164 (356)
.|++++|.+.
T Consensus 113 ~L~Ls~N~l~ 122 (605)
T 1m9s_A 113 SLSLEHNGIS 122 (605)
T ss_dssp EEECTTSCCC
T ss_pred EEEecCCCCC
Confidence 6666666655
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.5e-17 Score=142.54 Aligned_cols=122 Identities=20% Similarity=0.252 Sum_probs=83.0
Q ss_pred CcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEE
Q 041463 30 LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILD 109 (356)
Q Consensus 30 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 109 (356)
+..+.+....+.+. ...-.+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 26 ~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~-----~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~ 96 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-----V-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF 96 (291)
T ss_dssp HHHHHTTCSCTTSE-ECHHHHHTCCEEECTTSCCCC-----C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred HHHHHhcCCCcccc-cchhhcCcccEEEccCCCccc-----C-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEE
Confidence 33444555444421 111246788888888887763 2 246677888888888888875444 77888888888
Q ss_pred cccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCccc
Q 041463 110 MSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLS 164 (356)
Q Consensus 110 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 164 (356)
+++|.+... ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.
T Consensus 97 l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 97 LDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp CCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC
Confidence 888887742 2377788888888888887742 45667777777777777765
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=2e-17 Score=146.45 Aligned_cols=176 Identities=22% Similarity=0.168 Sum_probs=141.4
Q ss_pred eEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC--CCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463 6 RTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL--GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT 83 (356)
Q Consensus 6 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 83 (356)
++++++++.++ .+|..+. +.+++|++++|.+++..+..+ ++++|++|++++|.+.+. .+..|..+++|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i----~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI----SSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE----CTTTTTTCTTCCE
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc----ChhhccCCCCCCE
Confidence 57888999887 4666554 578999999999998777766 789999999999998742 2357888999999
Q ss_pred EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccc---cCCCCCcEEEecC
Q 041463 84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSL---KNCTFMESLDLGD 160 (356)
Q Consensus 84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l---~~l~~L~~L~l~~ 160 (356)
|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.++...+..+ ..+++|+.|++++
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 9999999987777789999999999999999998888899999999999999999984333334 5689999999999
Q ss_pred CcccccCCchhhcccccc-eeEEEcccCccc
Q 041463 161 NNLSGNIPAWIGASMPGL-LHILDLSHNDLS 190 (356)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~-L~~L~l~~~~l~ 190 (356)
|.+. .++......++.. ++.|++.+|++.
T Consensus 173 N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 173 NKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCCC-CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCC-ccCHHHhhhccHhhcceEEecCCCcc
Confidence 9998 5554333334331 478999998764
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=2.8e-17 Score=143.65 Aligned_cols=102 Identities=15% Similarity=-0.005 Sum_probs=82.5
Q ss_pred ccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCcc-EEEccCCcccccCCccccCcCCCCE
Q 041463 231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLE-TLDLSKNKLSGSIPPSMASLIFMNH 309 (356)
Q Consensus 231 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~ 309 (356)
.+++|+.+++++|.++.....+|.++.+|++|++.+| +.......|.++++|+ .+++.+ .++...+..|.+|++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 3567888999988888777788888889999999887 6656667888899998 999988 777677788899999999
Q ss_pred EEcccCcccccCCCC-cccCcCCCcc
Q 041463 310 LNLSYNNLSGEIPNT-NQFQTLNDPS 334 (356)
Q Consensus 310 L~l~~n~~~~~~~~~-~~l~~l~~~~ 334 (356)
+++++|.+....+.. .+.++|+.++
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 999888888777755 6677776654
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=8.6e-17 Score=129.79 Aligned_cols=85 Identities=19% Similarity=0.304 Sum_probs=67.2
Q ss_pred ccccccEEeecCCcccccCchhhhcccccCeEEccCCc-CcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCE
Q 041463 231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH-LVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNH 309 (356)
Q Consensus 231 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 309 (356)
.+++|+.|++++|.+.+..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|++++ ++ .+..+++|++
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQ 185 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence 34456669999999887778888889999999999998 66 454 68889999999999999985 44 6788999999
Q ss_pred EEcccCcccc
Q 041463 310 LNLSYNNLSG 319 (356)
Q Consensus 310 L~l~~n~~~~ 319 (356)
|++++|++.+
T Consensus 186 L~l~~N~i~~ 195 (197)
T 4ezg_A 186 LYAFSQTIGG 195 (197)
T ss_dssp EEECBC----
T ss_pred EEeeCcccCC
Confidence 9999999864
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=9.5e-17 Score=150.59 Aligned_cols=145 Identities=21% Similarity=0.266 Sum_probs=103.4
Q ss_pred CCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEE
Q 041463 29 TLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYIL 108 (356)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 108 (356)
.+..+.+..+.+.+. ...-.++.|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|++|
T Consensus 22 ~l~~l~l~~~~i~~~-~~~~~L~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-----VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHTTCSCTTSE-ECHHHHTTCCCCBCTTCCCCC-----CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHHhccCCCcccc-cchhcCCCCCEEECcCCCCCC-----Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 345566666665532 222357899999999998863 22 57789999999999999886554 8889999999
Q ss_pred EcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCc
Q 041463 109 DMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHND 188 (356)
Q Consensus 109 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 188 (356)
++++|.+... ..+..+++|+.|++++|.+.+ ...+..+++|+.|++++|.+.+. ..+ ..++. |+.|++++|.
T Consensus 93 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l-~~l~~-L~~L~Ls~N~ 164 (605)
T 1m9s_A 93 FLDENKIKDL--SSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVL-SRLTK-LDTLSLEDNQ 164 (605)
T ss_dssp ECCSSCCCCC--TTSTTCTTCCEEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGG-GSCTT-CSEEECCSSC
T ss_pred ECcCCCCCCC--hhhccCCCCCEEEecCCCCCC--CccccCCCccCEEECCCCccCCc--hhh-cccCC-CCEEECcCCc
Confidence 9999998842 367889999999999999874 24678888888888888887632 121 11222 5555555554
Q ss_pred cc
Q 041463 189 LS 190 (356)
Q Consensus 189 l~ 190 (356)
+.
T Consensus 165 l~ 166 (605)
T 1m9s_A 165 IS 166 (605)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=1.7e-16 Score=131.09 Aligned_cols=154 Identities=23% Similarity=0.291 Sum_probs=109.9
Q ss_pred CcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEc
Q 041463 105 LYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDL 184 (356)
Q Consensus 105 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l 184 (356)
-+.++++++.+. ..|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+. .++......++. |+.|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~-L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ-LTVLDL 95 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT-CCEEEC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCC-cCEEEC
Confidence 566778777776 4444332 67888888888888666777888888888888888876 444444343444 888888
Q ss_pred ccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEc
Q 041463 185 SHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNL 264 (356)
Q Consensus 185 ~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L 264 (356)
++|.+.+..+..+ ..+++|+.|++++|.+. .+|..+..+++|++|++
T Consensus 96 s~N~l~~l~~~~~--------------------------------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 96 GTNQLTVLPSAVF--------------------------------DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142 (229)
T ss_dssp CSSCCCCCCTTTT--------------------------------TTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEEC
T ss_pred CCCcCCccChhHh--------------------------------CcchhhCeEeccCCccc-ccCcccccCCCCCEEEC
Confidence 8887764333323 34445666888888887 56667778888888888
Q ss_pred cCCcCcCCCCcCcCCCCCccEEEccCCccccc
Q 041463 265 SHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS 296 (356)
Q Consensus 265 ~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~ 296 (356)
++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 143 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 143 DQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 88888855556677888888888888887643
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=1.7e-19 Score=168.24 Aligned_cols=101 Identities=30% Similarity=0.346 Sum_probs=87.2
Q ss_pred cccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccC-CccccCcCCCC
Q 041463 230 TTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSI-PPSMASLIFMN 308 (356)
Q Consensus 230 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~ 308 (356)
..+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+
T Consensus 460 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 460 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence 45566777999999999 678899999999999999999994 66 8899999999999999999766 89999999999
Q ss_pred EEEcccCcccccCCCCcc----cCcCCCc
Q 041463 309 HLNLSYNNLSGEIPNTNQ----FQTLNDP 333 (356)
Q Consensus 309 ~L~l~~n~~~~~~~~~~~----l~~l~~~ 333 (356)
.|++++|++++.+|.... ++.|+.+
T Consensus 537 ~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 537 LLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp EEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred EEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 999999999998886633 5666654
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=126.50 Aligned_cols=110 Identities=27% Similarity=0.354 Sum_probs=60.2
Q ss_pred ccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEccc
Q 041463 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSY 314 (356)
Q Consensus 235 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 314 (356)
++.|++++|.+. .+|..|..+++|++|++++|.|++..+..|..+++|++|+|++|++++..+..|.++++|++|++++
T Consensus 33 l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp CCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 444555555555 3445555556666666666666544445555566666666666666655555555566666666666
Q ss_pred CcccccCCCC-cccCcCCCccccccCccccCCCCCCCCC
Q 041463 315 NNLSGEIPNT-NQFQTLNDPSIYEGNLALCGDPLPKKCP 352 (356)
Q Consensus 315 n~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~c~ 352 (356)
|+++...+.. ..++.|+.++ +.+|||.|||+
T Consensus 112 N~l~~~~~~~~~~l~~L~~L~-------L~~N~~~C~c~ 143 (193)
T 2wfh_A 112 NDISVVPEGAFNDLSALSHLA-------IGANPLYCDCN 143 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEE-------CCSSCEECSGG
T ss_pred CCCCeeChhhhhcCccccEEE-------eCCCCeecCCc
Confidence 6665544432 3444444332 23455666654
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=8.5e-17 Score=135.80 Aligned_cols=170 Identities=19% Similarity=0.222 Sum_probs=107.9
Q ss_pred cccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEE
Q 041463 78 LKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLD 157 (356)
Q Consensus 78 l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 157 (356)
+.+++.++++++.+.+.. .+..+++|++|++++|.+... + .+..+++|++|++++|.+++. +. +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEE
Confidence 455666666666665332 456677777777777776632 3 466677777777777777633 32 66777777777
Q ss_pred ecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccE
Q 041463 158 LGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNL 237 (356)
Q Consensus 158 l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 237 (356)
+++|.+.+ ++.... ..|+.|++++|.+.+. +. +..+++|+.
T Consensus 92 L~~N~l~~-l~~~~~----~~L~~L~L~~N~l~~~--~~--------------------------------l~~l~~L~~ 132 (263)
T 1xeu_A 92 VNRNRLKN-LNGIPS----ACLSRLFLDNNELRDT--DS--------------------------------LIHLKNLEI 132 (263)
T ss_dssp CCSSCCSC-CTTCCC----SSCCEEECCSSCCSBS--GG--------------------------------GTTCTTCCE
T ss_pred CCCCccCC-cCcccc----CcccEEEccCCccCCC--hh--------------------------------hcCcccccE
Confidence 77777653 332221 2377777777765531 11 234455666
Q ss_pred EeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCccccc
Q 041463 238 LDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGS 296 (356)
Q Consensus 238 L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~ 296 (356)
|++++|.+++. + .+..+++|++|++++|.+.+. ..+..+++|+.|++++|+++..
T Consensus 133 L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 133 LSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp EECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred EECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 77777777643 2 566777777788877777744 5667777777777777777744
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=1.8e-16 Score=127.24 Aligned_cols=133 Identities=24% Similarity=0.280 Sum_probs=93.1
Q ss_pred cEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccc
Q 041463 154 ESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLY 233 (356)
Q Consensus 154 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (356)
+.++++++.+. .+|..+.. .++.|++++|.+.+..+.. .+..++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~----~l~~L~l~~n~i~~~~~~~-------------------------------~~~~l~ 54 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL----HTTELLLNDNELGRISSDG-------------------------------LFGRLP 54 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT----TCSEEECCSCCCCSBCCSC-------------------------------SGGGCT
T ss_pred CEEEcCCCCcC-cCccCCCC----CCCEEECCCCcCCccCCcc-------------------------------ccccCC
Confidence 45666666664 44443322 3677777777665332211 134555
Q ss_pred cccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463 234 LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS 313 (356)
Q Consensus 234 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 313 (356)
+|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..|..+..+++|++|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 66668888888887777778888888888888888886666677888888888888888887777788888888888888
Q ss_pred cCcccccCC
Q 041463 314 YNNLSGEIP 322 (356)
Q Consensus 314 ~n~~~~~~~ 322 (356)
+|++.+..+
T Consensus 135 ~N~l~c~c~ 143 (192)
T 1w8a_A 135 SNPFNCNCH 143 (192)
T ss_dssp TCCBCCSGG
T ss_pred CCCccCcCc
Confidence 888876544
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=1.9e-15 Score=127.52 Aligned_cols=169 Identities=20% Similarity=0.259 Sum_probs=129.8
Q ss_pred ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI 82 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 82 (356)
.+++.++++++.+++.. .+..+ ++|++|++++|.++. ++..-.+++|++|++++|.+++ ++. +..+++|+
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~L~~N~i~~-----~~~-l~~l~~L~ 88 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQS-LAGMQFFTNLKELHLSHNQISD-----LSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCC-----CGG-GTTCSSCC
T ss_pred HHHHHHHhcCCCccccc--chhhc-CcCcEEECcCCCccc-chHHhhCCCCCEEECCCCccCC-----Chh-hccCCCCC
Confidence 45667778888887533 46666 899999999998884 4444468999999999998874 333 78899999
Q ss_pred EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCc
Q 041463 83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNN 162 (356)
Q Consensus 83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 162 (356)
+|++++|.+.+. +. +.. ++|++|++++|.+... ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.
T Consensus 89 ~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 89 ELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp EEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSC
T ss_pred EEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCc
Confidence 999999998753 33 223 8899999999998853 3578899999999999999843 368889999999999999
Q ss_pred ccccCCchhhcccccceeEEEcccCccccc
Q 041463 163 LSGNIPAWIGASMPGLLHILDLSHNDLSGF 192 (356)
Q Consensus 163 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 192 (356)
+.+. ..+ ..++. |+.|++++|.+...
T Consensus 162 i~~~--~~l-~~l~~-L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 162 ITNT--GGL-TRLKK-VNWIDLTGQKCVNE 187 (263)
T ss_dssp CCBC--TTS-TTCCC-CCEEEEEEEEEECC
T ss_pred Ccch--HHh-ccCCC-CCEEeCCCCcccCC
Confidence 8754 222 22443 89999999987643
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=2e-15 Score=121.18 Aligned_cols=134 Identities=22% Similarity=0.293 Sum_probs=106.4
Q ss_pred CcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEE
Q 041463 30 LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILD 109 (356)
Q Consensus 30 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 109 (356)
-++++++++.++. +|..+ ..++++|++++|.+.+..+ ...+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 10 ~~~l~~s~~~l~~-ip~~~-~~~l~~L~l~~n~i~~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 10 GTTVDCTGRGLKE-IPRDI-PLHTTELLLNDNELGRISS---DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTSCCSS-CCSCC-CTTCSEEECCSCCCCSBCC---SCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCEEEcCCCCcCc-CccCC-CCCCCEEECCCCcCCccCC---ccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 3677888887763 44332 2388888888888764211 02377888999999999999877788888999999999
Q ss_pred cccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCC
Q 041463 110 MSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIP 168 (356)
Q Consensus 110 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 168 (356)
+++|.+....+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+....+
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999987777788889999999999999987778888899999999999998875544
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.7e-16 Score=138.61 Aligned_cols=265 Identities=12% Similarity=0.035 Sum_probs=133.9
Q ss_pred CCCCcEEecCCCcccCcCCCCCCcccCC-cccccEEeccccccc--ccccccccCCCCCcEEEcccCcccccccccccC-
Q 041463 50 FNFPATVDLSSNNFEGRLPLCIPKSIGN-LKQLITLVISNNNLS--GEIPLLFSNSSFLYILDMSNNSLSGSIPESIGS- 125 (356)
Q Consensus 50 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~i~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~- 125 (356)
+..+++|.++++--...+ ..+.. +++|++|++++|.+. ..... .++.++.+.+..+. +...+|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~-----~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~ 92 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDF-----RHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNV 92 (329)
T ss_dssp HHHCSEEEEEEEECHHHH-----HHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEE
T ss_pred hCceeEEEEeccccHHHH-----HHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhccc
Confidence 456777777754211100 12222 677888888888776 11111 11223333333332 22344555
Q ss_pred -------CCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcc----cccCC
Q 041463 126 -------LRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDL----SGFIP 194 (356)
Q Consensus 126 -------l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l----~~~~~ 194 (356)
+++|+.+.+.+ .++......|..+++|+.+++.+|.+. .++...+..+.. +..+....... .....
T Consensus 93 ~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~-l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 93 VNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVT-AIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp ETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTC-EEEECTTCTHHHHTSTTTTT
T ss_pred ccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCc-eEEecCcchhhhhccccccc
Confidence 66777777766 555444555666677777777666655 333332222221 34443332111 00011
Q ss_pred CCcCCCCCCcccCCCCCccCCCeeeeecCCccc----cccccccccEEeecCCcccccCchhh-hcccccCeEEccCCcC
Q 041463 195 PRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERK----YFTTLYLVNLLDLSSTNLSAEIPAEL-TSLVHLGTLNLSHNHL 269 (356)
Q Consensus 195 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~L~~L~L~~n~i 269 (356)
..+..+..++.. .........+. ..-...+++.+.+.+.-.. .....+ ..+++|+++++.+|.+
T Consensus 170 ~~f~~~~~L~~~----------i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i 238 (329)
T 3sb4_A 170 FAFIEGEPLETT----------IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNA 238 (329)
T ss_dssp SCEEESCCCEEE----------EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCC
T ss_pred ccccccccccee----------EEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCc
Confidence 112122222100 00000000000 0012344555666554222 111222 2367888888888887
Q ss_pred cCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCC-EEEcccCcccccCCCC-cccCcCCCccccccCcc
Q 041463 270 VGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMN-HLNLSYNNLSGEIPNT-NQFQTLNDPSIYEGNLA 341 (356)
Q Consensus 270 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~-~~l~~l~~~~~~~~~~~ 341 (356)
+......|.++++|+.|++.+| ++.....+|.++++|+ .+++.+ .++...+.. .+++.|+.+++..+++.
T Consensus 239 ~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 239 TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 7555567888888888888887 6656777788888888 888876 666555444 66777777763234443
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.6e-18 Score=161.65 Aligned_cols=196 Identities=21% Similarity=0.215 Sum_probs=129.3
Q ss_pred CCcccccEEecccccccccccccccCCCCCcEEEcccCc-------------ccccccccccCCCCCcEEE-eecccccc
Q 041463 76 GNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS-------------LSGSIPESIGSLRTLRFLV-LRNNYLSG 141 (356)
Q Consensus 76 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~l~~ 141 (356)
...++|+.|++++|.+. .+|..+..+++|+.|+++++. .....|..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34556666666666665 556666666666666665443 2223344455555565555 33332210
Q ss_pred ccCc------ccc--CCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCcc
Q 041463 142 ELPL------SLK--NCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQH 213 (356)
Q Consensus 142 ~~~~------~l~--~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~ 213 (356)
++. .+. ....|+.|++++|.+. .+|. +. .++. |+.|++++|.+. .+|..+
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~-~l~~-L~~L~Ls~N~l~-~lp~~~---------------- 482 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LE-QLLL-VTHLDLSHNRLR-ALPPAL---------------- 482 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GG-GGTT-CCEEECCSSCCC-CCCGGG----------------
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCC-CCcC-cc-cccc-CcEeecCccccc-ccchhh----------------
Confidence 000 000 0125888889888887 3554 33 3443 889999888876 445444
Q ss_pred CCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCC-CcCcCCCCCccEEEccCCc
Q 041463 214 EGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKI-PEEIGNFEWLETLDLSKNK 292 (356)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~L~~n~ 292 (356)
+.+++|+.|+|++|.+++ +| .+..+++|++|++++|.+++.. |..++.+++|+.|++++|+
T Consensus 483 ----------------~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 483 ----------------AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp ----------------GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred ----------------hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 445566679999999986 56 7889999999999999999665 8999999999999999999
Q ss_pred ccccCCcc---ccCcCCCCEEEc
Q 041463 293 LSGSIPPS---MASLIFMNHLNL 312 (356)
Q Consensus 293 i~~~~~~~---~~~l~~L~~L~l 312 (356)
+++..+.. +..+++|+.|++
T Consensus 545 l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 545 LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCccHHHHHHHHCcccCccCC
Confidence 99654432 334789998864
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.4e-15 Score=119.39 Aligned_cols=131 Identities=21% Similarity=0.185 Sum_probs=101.6
Q ss_pred cCCcEeeccCCccC-CcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCC
Q 041463 28 LTLDELDVAYNELR-GRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFL 105 (356)
Q Consensus 28 ~~L~~L~l~~~~~~-~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L 105 (356)
++|++|++++|.++ +.++..+ .+++|++|++++|.+++ + ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-----C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-----h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 67888888888887 4555554 57888888888888763 2 467778888888888888886677777778889
Q ss_pred cEEEcccCccccccc-ccccCCCCCcEEEeeccccccccC---ccccCCCCCcEEEecCCccc
Q 041463 106 YILDMSNNSLSGSIP-ESIGSLRTLRFLVLRNNYLSGELP---LSLKNCTFMESLDLGDNNLS 164 (356)
Q Consensus 106 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l~~~~l~ 164 (356)
++|++++|.+.+... ..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 999998888875432 677888889999999988884433 36788888999998888775
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=3e-16 Score=150.73 Aligned_cols=186 Identities=22% Similarity=0.214 Sum_probs=118.4
Q ss_pred ccceEEEcccccccccCCchHHhhccCCcE-----eeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccC
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLSLTLDE-----LDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIG 76 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~-----L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 76 (356)
++++.|+|..+.+.. .+..+... ..|+. +++..+.+. ..+..+ .+..|+.|+|++|.+. .++..+.
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~-l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-----~l~~~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQH-KKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-----NISANIF 244 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-----CCCGGGG
T ss_pred CccceEEeeCCCCCc-chhhHhhc-CccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-----CCChhhc
Confidence 346788888888764 33333222 22222 223333333 334444 6899999999999987 3456666
Q ss_pred CcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEE
Q 041463 77 NLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESL 156 (356)
Q Consensus 77 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 156 (356)
.+++|++|+|++|.++ .+|..|..+++|++|++++|.+. ..|..+..+++|++|++++|.++ .+|..+..+++|+.|
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL 321 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence 8999999999999998 78888999999999999999999 67888999999999999999998 778889999999999
Q ss_pred EecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCC
Q 041463 157 DLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNL 200 (356)
Q Consensus 157 ~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l 200 (356)
++++|.+.+..|..+...... ...+++.+|.+.+.+|..+..+
T Consensus 322 ~L~~N~l~~~~p~~~~~~~~~-~~~l~l~~N~l~~~~p~~l~~l 364 (727)
T 4b8c_D 322 GVEGNPLEKQFLKILTEKSVT-GLIFYLRDNRPEIPLPHERRFI 364 (727)
T ss_dssp ECTTSCCCSHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCC----
T ss_pred eCCCCccCCCChHHHhhcchh-hhHHhhccCcccCcCcccccee
Confidence 999999987777665442221 3457788888887777655443
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=8.2e-16 Score=147.71 Aligned_cols=90 Identities=29% Similarity=0.332 Sum_probs=38.9
Q ss_pred cccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhccc
Q 041463 96 PLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASM 175 (356)
Q Consensus 96 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 175 (356)
+..+..+++|+.|++++|.+. ..+..+..+++|++|++++|.++ .+|..+..+++|+.|+|++|.+. .+|..+.. +
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-C 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG-G
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC-C
Confidence 333444444555555554444 23333334445555555555444 44444445555555555555544 33443322 2
Q ss_pred ccceeEEEcccCccc
Q 041463 176 PGLLHILDLSHNDLS 190 (356)
Q Consensus 176 ~~~L~~L~l~~~~l~ 190 (356)
.. |+.|++++|.+.
T Consensus 293 ~~-L~~L~L~~N~l~ 306 (727)
T 4b8c_D 293 FQ-LKYFYFFDNMVT 306 (727)
T ss_dssp TT-CSEEECCSSCCC
T ss_pred CC-CCEEECCCCCCC
Confidence 22 555555555443
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=1.7e-14 Score=113.13 Aligned_cols=91 Identities=22% Similarity=0.164 Sum_probs=74.3
Q ss_pred ccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCC-CcCcCCCCCccEEEccCCcccccCC---ccccCcCC
Q 041463 231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKI-PEEIGNFEWLETLDLSKNKLSGSIP---PSMASLIF 306 (356)
Q Consensus 231 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~ 306 (356)
.+++|+.|++++|.+.+..+..+..+++|++|++++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++
T Consensus 69 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 148 (168)
T 2ell_A 69 KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148 (168)
T ss_dssp CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence 4455677999999998767778888999999999999998432 2678889999999999999995544 47888999
Q ss_pred CCEEEcccCcccccC
Q 041463 307 MNHLNLSYNNLSGEI 321 (356)
Q Consensus 307 L~~L~l~~n~~~~~~ 321 (356)
|++|++++|++....
T Consensus 149 L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 149 LTYLDGYDREDQEAP 163 (168)
T ss_dssp CCEETTEETTSCBCC
T ss_pred CcEecCCCCChhhcc
Confidence 999999999887544
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=5.3e-15 Score=117.14 Aligned_cols=138 Identities=20% Similarity=0.217 Sum_probs=101.1
Q ss_pred CcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCcccccccc
Q 041463 153 MESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTL 232 (356)
Q Consensus 153 L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (356)
.+.++++++.+. .+|..+. ..++.|++++|.+.+..+.. +..+
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~----~~l~~L~l~~n~l~~~~~~~--------------------------------~~~l 51 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP----SSATRLELESNKLQSLPHGV--------------------------------FDKL 51 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC----TTCSEEECCSSCCCCCCTTT--------------------------------TTTC
T ss_pred CCEEEecCCCCc-cCCCCCC----CCCcEEEeCCCcccEeCHHH--------------------------------hcCc
Confidence 355666666655 3443321 23777777777765333222 2344
Q ss_pred ccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEc
Q 041463 233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNL 312 (356)
Q Consensus 233 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 312 (356)
++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 55666999999988766667788899999999999998666667888999999999999999666667788999999999
Q ss_pred ccCcccccCCCCccc
Q 041463 313 SYNNLSGEIPNTNQF 327 (356)
Q Consensus 313 ~~n~~~~~~~~~~~l 327 (356)
++|++.+..|.+..+
T Consensus 132 ~~N~~~~~~~~l~~l 146 (177)
T 2o6r_A 132 HTNPWDCSCPRIDYL 146 (177)
T ss_dssp CSSCBCCCHHHHHHH
T ss_pred cCCCeeccCccHHHH
Confidence 999998877655433
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=2.3e-14 Score=114.89 Aligned_cols=128 Identities=27% Similarity=0.336 Sum_probs=100.7
Q ss_pred cEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEEc
Q 041463 31 DELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDM 110 (356)
Q Consensus 31 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 110 (356)
++++++++.++. +|..+ .++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 13 ~~l~~~~~~l~~-ip~~~-~~~l~~L~L~~n~i~-----~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI-PRDVTELYLDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSS-CCSCC-CTTCCEEECCSSCCC-----SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCCc-CCCCC-CCCCCEEECCCCcCc-----hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 567777777773 33322 367888888888876 34567888888888888888888777777888888999999
Q ss_pred ccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccc
Q 041463 111 SNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSG 165 (356)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~ 165 (356)
++|.+....+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+..
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9988887777788888889999999998885555567888889999998888753
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=5.2e-15 Score=113.64 Aligned_cols=126 Identities=20% Similarity=0.183 Sum_probs=89.5
Q ss_pred cCCcEeeccCCccC-CcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCC
Q 041463 28 LTLDELDVAYNELR-GRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFL 105 (356)
Q Consensus 28 ~~L~~L~l~~~~~~-~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L 105 (356)
+++++|++++|.++ +..+..+ .+++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 57888888888877 4455554 577888888888877632 456677888888888888776566667777888
Q ss_pred cEEEcccCccccc-ccccccCCCCCcEEEeeccccccccC---ccccCCCCCcEEEec
Q 041463 106 YILDMSNNSLSGS-IPESIGSLRTLRFLVLRNNYLSGELP---LSLKNCTFMESLDLG 159 (356)
Q Consensus 106 ~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l~ 159 (356)
++|++++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888877743 23567777778888888887774433 356777777777765
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=2.7e-15 Score=115.24 Aligned_cols=129 Identities=19% Similarity=0.166 Sum_probs=108.2
Q ss_pred cccceEEEccccccc-ccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCccc
Q 041463 2 QTELRTLVLNKARIS-DTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQ 80 (356)
Q Consensus 2 l~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 80 (356)
.+++++|++++|.++ +.+|..+..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++. +|..+..+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEF-EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG----LEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTC-TTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC----THHHHHHCTT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhc-CCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch----HHHHhhhCCC
Confidence 367999999999998 6777767776 8999999999999866 4444799999999999999853 4466667999
Q ss_pred ccEEeccccccccc-ccccccCCCCCcEEEcccCccccccc---ccccCCCCCcEEEeec
Q 041463 81 LITLVISNNNLSGE-IPLLFSNSSFLYILDMSNNSLSGSIP---ESIGSLRTLRFLVLRN 136 (356)
Q Consensus 81 L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~ 136 (356)
|++|++++|.+.+. .+..+..+++|++|++++|.+....+ ..+..+++|++|++++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999999864 34779999999999999999986655 4678899999998763
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=1.6e-14 Score=113.46 Aligned_cols=108 Identities=21% Similarity=0.284 Sum_probs=72.1
Q ss_pred ccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEccc
Q 041463 235 VNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSY 314 (356)
Q Consensus 235 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 314 (356)
.+.++++++.++. +|..+ .++|++|++++|.|++..+..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4557777777763 44333 26677777777777755566777777777777777777765666667777777777777
Q ss_pred CcccccCCC-CcccCcCCCccccccCccccCCCCCCCCC
Q 041463 315 NNLSGEIPN-TNQFQTLNDPSIYEGNLALCGDPLPKKCP 352 (356)
Q Consensus 315 n~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~c~ 352 (356)
|++++..+. +..++.|+.++ +.+|||.|+|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~-------L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIW-------LLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEE-------CCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEE-------eCCCCCCCCch
Confidence 777766664 35566665544 34567777774
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=8.2e-13 Score=117.92 Aligned_cols=242 Identities=10% Similarity=0.068 Sum_probs=135.4
Q ss_pred cCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcE
Q 041463 28 LTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYI 107 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 107 (356)
..++.+.+.. .++.....++.-.+|+.+.+..+ +. .++ ..+|.. .+|+.+.+.. .+.......|..+++|+.
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~-~I~---~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LK-SIG---DMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CC-EEC---TTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-cc-EEC---HHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 5677777754 34445555554347888887765 33 111 234555 3578887775 455455567788888888
Q ss_pred EEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccC
Q 041463 108 LDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHN 187 (356)
Q Consensus 108 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 187 (356)
+++..+.+......+|. ..+|+.+.+..+ +.......|..+++|+.+++..+ +. .++...+... .++.+.+..
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~~--~L~~i~lp~- 257 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRES--GITTVKLPN- 257 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTTC--CCSEEEEET-
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-CccccccccC--CccEEEeCC-
Confidence 88888777756556665 477888888744 55455567777888888888764 33 3333333332 377777743
Q ss_pred cccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCccc-----ccCchhhhcccccCeE
Q 041463 188 DLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLS-----AEIPAELTSLVHLGTL 262 (356)
Q Consensus 188 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~~~~~~~~~~~~L~~L 262 (356)
.+.......+..+++|+. +.+.++.+. .....+|.++++|+.+
T Consensus 258 ~i~~I~~~aF~~c~~L~~--------------------------------l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l 305 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAE--------------------------------VTTYGSTFNDDPEAMIHPYCLEGCPKLARF 305 (401)
T ss_dssp TCCEECTTTTTTCTTCCE--------------------------------EEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred CccEEChhHhhCCCCCCE--------------------------------EEeCCccccCCcccEECHHHhhCCccCCeE
Confidence 344344445555544443 444443332 2333445555555555
Q ss_pred EccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccc
Q 041463 263 NLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSG 319 (356)
Q Consensus 263 ~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 319 (356)
.+.+ .+.......|.++++|+.+.|..+ ++......|.++ +|+.+++++|....
T Consensus 306 ~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 306 EIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred EeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 5552 233233344555555555555333 333444455555 55555555554443
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.3e-13 Score=109.12 Aligned_cols=132 Identities=20% Similarity=0.170 Sum_probs=92.3
Q ss_pred CcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCcEEE
Q 041463 30 LDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILD 109 (356)
Q Consensus 30 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 109 (356)
.+.+++.++.++.. +.. ..++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 9 ~~~l~~~~~~l~~~-p~~-~~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-PTG-IPSSATRLELESNKLQSL----PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSCCSSC-CTT-CCTTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCCCccC-CCC-CCCCCcEEEeCCCcccEe----CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 45666766666633 221 135777777777776631 123456777888888888887755556677788888888
Q ss_pred cccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccC
Q 041463 110 MSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNI 167 (356)
Q Consensus 110 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 167 (356)
+++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 8888887666666777888888888888887544445677888888888888876443
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=3.5e-14 Score=111.84 Aligned_cols=107 Identities=21% Similarity=0.312 Sum_probs=68.6
Q ss_pred cEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccC
Q 041463 236 NLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYN 315 (356)
Q Consensus 236 ~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 315 (356)
+.++++++.+. .+|..+. ++|++|++++|.+.+..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 44677777765 3443332 56777777777777555666777777777777777777555555667777777777777
Q ss_pred cccccCCC-CcccCcCCCccccccCccccCCCCCCCCC
Q 041463 316 NLSGEIPN-TNQFQTLNDPSIYEGNLALCGDPLPKKCP 352 (356)
Q Consensus 316 ~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~c~ 352 (356)
++.+.++. +..++.|+.++ +.+|||.|+|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~-------L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIY-------LYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEE-------CCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEE-------eCCCCcccccc
Confidence 77766655 35566665544 33466666664
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=3.1e-12 Score=114.20 Aligned_cols=269 Identities=8% Similarity=0.009 Sum_probs=192.4
Q ss_pred cceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCcccccE
Q 041463 4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLIT 83 (356)
Q Consensus 4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 83 (356)
.++.+.+.+ .++..-..+|.+ .+|+.+.+..+ ++.....+|.-.+|+.+.+.. .+.. .-..+|..+++|+.
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~--~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~----I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRN--SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQ----LKEDIFYYCYNLKK 184 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTT--CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCE----ECSSTTTTCTTCCE
T ss_pred CccEEEECC-ccCEehHhhccc--CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccE----ehHHHhhCcccCCe
Confidence 455555554 343334455555 37999999776 666666677556899999986 3432 12367889999999
Q ss_pred EecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcc
Q 041463 84 LVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNL 163 (356)
Q Consensus 84 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 163 (356)
+++..|.+.......|. +.+|+.+.+..+ +......+|.++++|+.+.+..+ ++......|.. .+|+.+.+..+ +
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-V 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-C
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-c
Confidence 99999988855555665 689999999855 76677888999999999999875 44345556666 78999999543 4
Q ss_pred cccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCC
Q 041463 164 SGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSST 243 (356)
Q Consensus 164 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 243 (356)
. .++...+..+.. |+.+.+.++.+...... ......|..+++|+.+.+..
T Consensus 260 ~-~I~~~aF~~c~~-L~~l~l~~~~~~~~~~~---------------------------~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 260 T-NIASRAFYYCPE-LAEVTTYGSTFNDDPEA---------------------------MIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp C-EECTTTTTTCTT-CCEEEEESSCCCCCTTC---------------------------EECTTTTTTCTTCCEECCCT-
T ss_pred c-EEChhHhhCCCC-CCEEEeCCccccCCccc---------------------------EECHHHhhCCccCCeEEeCC-
Confidence 4 455555555554 99999987654310000 01233466777788899884
Q ss_pred cccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcC-CCCEEEcccCccc
Q 041463 244 NLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLI-FMNHLNLSYNNLS 318 (356)
Q Consensus 244 ~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~~~ 318 (356)
.+......+|.++.+|+.+.+..+ ++......|.++ +|+.+++.+|.........|.+++ .++.|++..+.+.
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 476677788999999999999655 664667789898 999999999988877777888875 7889998877654
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=9.9e-14 Score=109.60 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=97.2
Q ss_pred ccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCcc
Q 041463 147 LKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSER 226 (356)
Q Consensus 147 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 226 (356)
+..+.+|+.|++++|.+. .++. +.. ....++.|++++|.+.+. ..
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~-~~~~L~~L~Ls~N~l~~~--~~------------------------------ 59 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGA-TLDQFDAIDFSDNEIRKL--DG------------------------------ 59 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGG-GTTCCSEEECCSSCCCEE--CC------------------------------
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhh-cCCCCCEEECCCCCCCcc--cc------------------------------
Confidence 345566677777776665 3332 222 222377777777766532 22
Q ss_pred ccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCc--CcCCCCCccEEEccCCcccccCCc----c
Q 041463 227 KYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPE--EIGNFEWLETLDLSKNKLSGSIPP----S 300 (356)
Q Consensus 227 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~--~~~~~~~L~~L~L~~n~i~~~~~~----~ 300 (356)
+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|. .+..+++|++|++++|+++ ..|. .
T Consensus 60 --l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~ 135 (176)
T 1a9n_A 60 --FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYV 135 (176)
T ss_dssp --CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHH
T ss_pred --cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHH
Confidence 234556777999999998766566788999999999999997 5555 7888999999999999998 4555 4
Q ss_pred ccCcCCCCEEEcccCccccc
Q 041463 301 MASLIFMNHLNLSYNNLSGE 320 (356)
Q Consensus 301 ~~~l~~L~~L~l~~n~~~~~ 320 (356)
+..+++|+.|++++|.....
T Consensus 136 ~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 136 IYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp HHHCTTCSEETTEECCHHHH
T ss_pred HHHCCccceeCCCcCCHHHH
Confidence 78899999999999987653
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=5.3e-14 Score=111.19 Aligned_cols=128 Identities=22% Similarity=0.221 Sum_probs=78.3
Q ss_pred cCCcEeeccCCccCCcCCCCCCCC-CCcEEecCCCcccCcCCCCCCcccCCcccccEEecccccccccccccccCCCCCc
Q 041463 28 LTLDELDVAYNELRGRVPNSLGFN-FPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLY 106 (356)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 106 (356)
++|++|++++|.++. ++....+. +|++|++++|.+++ + ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 19 ~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~-----~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCc-----c-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 567777777776663 33333333 67777777776653 1 3456667777777777776644334446667777
Q ss_pred EEEcccCcccccccc--cccCCCCCcEEEeeccccccccCcc----ccCCCCCcEEEecCCccc
Q 041463 107 ILDMSNNSLSGSIPE--SIGSLRTLRFLVLRNNYLSGELPLS----LKNCTFMESLDLGDNNLS 164 (356)
Q Consensus 107 ~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~~~l~ 164 (356)
+|++++|.+.. .+. .+..+++|++|++++|.++ ..|.. +..+++|+.|++++|...
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777776653 332 5566667777777777666 34442 566666777766666543
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.6e-15 Score=122.44 Aligned_cols=128 Identities=21% Similarity=0.208 Sum_probs=64.1
Q ss_pred cceEEEcccccccccCCc------hHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCC
Q 041463 4 ELRTLVLNKARISDTIPD------WFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGN 77 (356)
Q Consensus 4 ~L~~L~l~~~~i~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 77 (356)
.++.++++.+.+.+..|. .+..+ ++|++|++++|.+++ ++.+..+++|++|++++|.+. .+|..+..
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l-~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~-----~l~~~~~~ 91 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTL-KACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIK-----KIENLDAV 91 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHT-TTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEEC-----SCSSHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcC-CCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcc-----cccchhhc
Confidence 344444444444444443 45544 566666666665553 232223555666666655554 12333444
Q ss_pred cccccEEecccccccccccccccCCCCCcEEEcccCccccccc-ccccCCCCCcEEEeeccccc
Q 041463 78 LKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIP-ESIGSLRTLRFLVLRNNYLS 140 (356)
Q Consensus 78 l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~ 140 (356)
+++|++|++++|.+.+ .+ .+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 4555555555555553 22 34455555555555555553221 23445555555555555554
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=3.9e-13 Score=105.41 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=79.6
Q ss_pred cccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463 234 LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS 313 (356)
Q Consensus 234 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 313 (356)
+++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 46679999999987778888899999999999999986666678899999999999999997667778999999999999
Q ss_pred cCcccccCCCCccc
Q 041463 314 YNNLSGEIPNTNQF 327 (356)
Q Consensus 314 ~n~~~~~~~~~~~l 327 (356)
+|++....+.+..+
T Consensus 111 ~N~~~c~c~~l~~l 124 (170)
T 3g39_A 111 NNPWDCACSDILYL 124 (170)
T ss_dssp SSCBCTTBGGGHHH
T ss_pred CCCCCCCchhHHHH
Confidence 99998776655433
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=8.7e-13 Score=103.80 Aligned_cols=95 Identities=21% Similarity=0.219 Sum_probs=75.7
Q ss_pred cccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463 234 LVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS 313 (356)
Q Consensus 234 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 313 (356)
+|+.|++++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 46668888888887777788888899999999999885555567888999999999999986666668888999999999
Q ss_pred cCcccccCCCCcccC
Q 041463 314 YNNLSGEIPNTNQFQ 328 (356)
Q Consensus 314 ~n~~~~~~~~~~~l~ 328 (356)
+|++....+.+..+.
T Consensus 114 ~N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 114 NNPWDCECRDIMYLR 128 (174)
T ss_dssp SSCBCTTBGGGHHHH
T ss_pred CCCcccccccHHHHH
Confidence 999886655454433
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.38 E-value=2.9e-11 Score=108.12 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=53.6
Q ss_pred cccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCC
Q 041463 228 YFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFM 307 (356)
Q Consensus 228 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 307 (356)
.+..+.+|+.+.+..+ +......+|.++.+|+.+.+..+ ++......|.++.+|+.+++..+ ++.....+|.+|++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3455666777766543 44345566777777777777543 44344556777777777777665 554566677777777
Q ss_pred CEEEccc
Q 041463 308 NHLNLSY 314 (356)
Q Consensus 308 ~~L~l~~ 314 (356)
+.+++..
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 7777754
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=1e-14 Score=128.95 Aligned_cols=163 Identities=21% Similarity=0.163 Sum_probs=77.7
Q ss_pred ccceEEEcccccccccCCchHHhhc----cCCcEeeccCCccCCcCCCCC--CCCCCcEEecCCCcccCcCCCCCCccc-
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLS----LTLDELDVAYNELRGRVPNSL--GFNFPATVDLSSNNFEGRLPLCIPKSI- 75 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~- 75 (356)
++|++|++++|.++......+...+ ++|++|+|++|.+++.....+ .+.+|++|++++|.++......+...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3456666666666543333333321 356666666665543222222 244566666666655432111111111
Q ss_pred CCcccccEEeccccccccc----ccccccCCCCCcEEEcccCcccccc----cccccCCCCCcEEEeeccccccc----c
Q 041463 76 GNLKQLITLVISNNNLSGE----IPLLFSNSSFLYILDMSNNSLSGSI----PESIGSLRTLRFLVLRNNYLSGE----L 143 (356)
Q Consensus 76 ~~l~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~----~ 143 (356)
...++|++|++++|.+++. +...+..+++|++|++++|.+.+.. +..+...++|++|++++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 1245566666666655422 2223345555666666666554322 23344445566666666655432 1
Q ss_pred CccccCCCCCcEEEecCCcccc
Q 041463 144 PLSLKNCTFMESLDLGDNNLSG 165 (356)
Q Consensus 144 ~~~l~~l~~L~~L~l~~~~l~~ 165 (356)
...+...++|+.|++++|.+.+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 2223344556666666665553
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=2.1e-12 Score=113.50 Aligned_cols=106 Identities=25% Similarity=0.288 Sum_probs=66.4
Q ss_pred EeecCC-cccccCchhhhcccccCeEEccC-CcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccC
Q 041463 238 LDLSST-NLSAEIPAELTSLVHLGTLNLSH-NHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYN 315 (356)
Q Consensus 238 L~L~~~-~l~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 315 (356)
++++++ .+++ +|. +..+.+|++|+|++ |.+.+..+..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 566665 5653 444 66666777777775 6676555556777777777777777777666666777777777777777
Q ss_pred cccccCCCCcccCcCCCccccccCccccCCCCCCCCC
Q 041463 316 NLSGEIPNTNQFQTLNDPSIYEGNLALCGDPLPKKCP 352 (356)
Q Consensus 316 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~c~ 352 (356)
++++.++.......|+.++ +.+|+|.|+|+
T Consensus 91 ~l~~~~~~~~~~~~L~~l~-------l~~N~~~c~c~ 120 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELV-------LSGNPLHCSCA 120 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEE-------CCSSCCCCCGG
T ss_pred ccceeCHHHcccCCceEEE-------eeCCCccCCCc
Confidence 7776655542222244333 33466777764
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=3.9e-14 Score=114.22 Aligned_cols=82 Identities=20% Similarity=0.232 Sum_probs=47.9
Q ss_pred ccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCC-cCcCCCCCccEEEccCCcccccCCc----------cc
Q 041463 233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIP-EEIGNFEWLETLDLSKNKLSGSIPP----------SM 301 (356)
Q Consensus 233 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~----------~~ 301 (356)
++|+.|++++|.+.+ .+ .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..|. .+
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 344555555555553 22 45566667777777776663211 2456677777777777777644333 25
Q ss_pred cCcCCCCEEEcccCccc
Q 041463 302 ASLIFMNHLNLSYNNLS 318 (356)
Q Consensus 302 ~~l~~L~~L~l~~n~~~ 318 (356)
..+++|+.|| +++++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 6677777765 55554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=1.9e-13 Score=120.87 Aligned_cols=167 Identities=21% Similarity=0.090 Sum_probs=85.6
Q ss_pred CCCCcEEEcccCccccccccccc-----CCCCCcEEEeeccccccccCccc-cCCCCCcEEEecCCcccccCCchhhccc
Q 041463 102 SSFLYILDMSNNSLSGSIPESIG-----SLRTLRFLVLRNNYLSGELPLSL-KNCTFMESLDLGDNNLSGNIPAWIGASM 175 (356)
Q Consensus 102 l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 175 (356)
++.|++|++++|.+.......+. ..++|++|++++|.+++.....+ ..+++|+.|++++|.+++.....+...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46688888888877643332222 22577777777777754322222 2345677777777776543333332211
Q ss_pred ---ccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccC---
Q 041463 176 ---PGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEI--- 249 (356)
Q Consensus 176 ---~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~--- 249 (356)
...++.|++++|.++......+ ...+...++|+.|+|++|.+.+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l----------------------------~~~L~~~~~L~~L~Ls~N~l~~~g~~~ 202 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVL----------------------------MEGLAGNTSVTHLSLLHTGLGDEGLEL 202 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHH----------------------------HHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHH----------------------------HHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence 1226666666665542110000 011223445555666666665422
Q ss_pred -chhhhcccccCeEEccCCcCcCCC----CcCcCCCCCccEEEccCCccccc
Q 041463 250 -PAELTSLVHLGTLNLSHNHLVGKI----PEEIGNFEWLETLDLSKNKLSGS 296 (356)
Q Consensus 250 -~~~~~~~~~L~~L~L~~n~i~~~~----~~~~~~~~~L~~L~L~~n~i~~~ 296 (356)
+..+...++|++|+|++|.|++.. ...+...++|++|+|++|.+++.
T Consensus 203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 233444556666666666665321 12223345666666666666543
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.10 E-value=2.9e-09 Score=95.05 Aligned_cols=295 Identities=12% Similarity=0.048 Sum_probs=155.5
Q ss_pred CcccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCccc-------C------c
Q 041463 1 NQTELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFE-------G------R 66 (356)
Q Consensus 1 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~-------~------~ 66 (356)
++.+|+++.+..+ ++..-..+|.++ ++|+.+++..+ ++.....++ ++..|+.+.+..+-.. + .
T Consensus 69 ~c~~L~~i~lp~~-i~~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VREIGEFAFENC-SKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TCTTEEEEECCTT-CCEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCCceEEEeCCC-ccCcchhHhhCC-CCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence 4678999999754 554445556666 89999999754 443444445 4777777666543110 0 0
Q ss_pred CC----CCCCcccCCcccccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccc
Q 041463 67 LP----LCIPKSIGNLKQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGE 142 (356)
Q Consensus 67 ~~----~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 142 (356)
.+ ..-..+|..+++|+.+.+..+... .....|..+.+|+.+++..+ +......+|.++..|+.+.+..+...
T Consensus 146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-- 221 (394)
T 4fs7_A 146 IPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-- 221 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--
T ss_pred cCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--
Confidence 00 001134555666666666543221 33445666666666666554 33344445555555555544433221
Q ss_pred cCccccCCCCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCC----------CCc
Q 041463 143 LPLSLKNCTFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPK----------SVQ 212 (356)
Q Consensus 143 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~----------~~~ 212 (356)
..........|+.+.+..... .+.......+.. ++.+.+..+... .....+..+..++..... .+.
T Consensus 222 i~~~~~~~~~l~~i~ip~~~~--~i~~~~f~~~~~-l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~ 297 (394)
T 4fs7_A 222 LGDFALSKTGVKNIIIPDSFT--ELGKSVFYGCTD-LESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCS 297 (394)
T ss_dssp ECTTTTTTCCCCEEEECTTCC--EECSSTTTTCSS-CCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCT
T ss_pred eehhhcccCCCceEEECCCce--eccccccccccc-ceeEEcCCCcce-eeccccccccccceeccCceeeccccccccc
Confidence 111222233444444433211 111111111211 444444333211 122222222222221100 000
Q ss_pred cCCCeeeee--cCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccC
Q 041463 213 HEGRLRVVT--KGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSK 290 (356)
Q Consensus 213 ~~~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~ 290 (356)
....+.... .......|..+.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++......|.++++|+.+++..
T Consensus 298 ~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 298 SLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred cccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 111111100 1112345778899999999754 66566788999999999999876 6646667899999999999986
Q ss_pred CcccccCCccccCcCCCCEE
Q 041463 291 NKLSGSIPPSMASLIFMNHL 310 (356)
Q Consensus 291 n~i~~~~~~~~~~l~~L~~L 310 (356)
+ ++ .....|.++++|+.+
T Consensus 376 ~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 376 R-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp G-GG-GGGGGBCTTCEEEEE
T ss_pred C-CE-EhhheecCCCCCcEE
Confidence 5 33 334578888888765
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=3.3e-10 Score=99.41 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=65.2
Q ss_pred EEecCCC-cccCcCCCCCCcccCCcccccEEeccc-ccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEE
Q 041463 55 TVDLSSN-NFEGRLPLCIPKSIGNLKQLITLVISN-NNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFL 132 (356)
Q Consensus 55 ~L~l~~n-~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 132 (356)
.++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+....+..|..+++|++|
T Consensus 12 ~v~~~~~n~l~-----~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALD-----SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCT-----TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred EEEcCCCCCCC-----ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 4455555 554 2444 56666677777764 66665555667777777777777777766666666777777777
Q ss_pred EeeccccccccCccccCCCCCcEEEecCCccc
Q 041463 133 VLRNNYLSGELPLSLKNCTFMESLDLGDNNLS 164 (356)
Q Consensus 133 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 164 (356)
++++|.++...+..+..++ |+.|++.+|.+.
T Consensus 86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred eCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7777777643333344443 777777777665
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.04 E-value=3.2e-08 Score=88.33 Aligned_cols=103 Identities=10% Similarity=0.151 Sum_probs=73.7
Q ss_pred ccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCC
Q 041463 227 KYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIF 306 (356)
Q Consensus 227 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 306 (356)
..|..+..|+.+.+.. .+......+|.++.+|+.+.+..+ ++.+....|.++.+|+.+.|..+ ++.....+|.+|++
T Consensus 282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred cccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 4566788899998864 455566678999999999999765 55455678999999999999765 66567788999999
Q ss_pred CCEEEcccCcccccCCCCcccCcCCCcc
Q 041463 307 MNHLNLSYNNLSGEIPNTNQFQTLNDPS 334 (356)
Q Consensus 307 L~~L~l~~n~~~~~~~~~~~l~~l~~~~ 334 (356)
|+.+++.++.... ........|+.+.
T Consensus 359 L~~i~~~~~~~~~--~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 359 LNNIEYSGSRSQW--NAISTDSGLQNLP 384 (394)
T ss_dssp CCEEEESSCHHHH--HTCBCCCCC----
T ss_pred CCEEEECCceeeh--hhhhccCCCCEEE
Confidence 9999999876542 1233334444444
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=3.1e-10 Score=99.54 Aligned_cols=165 Identities=13% Similarity=0.129 Sum_probs=92.1
Q ss_pred ccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhc-ccccceeEEEcccCcccccCCCCcCCCC
Q 041463 123 IGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGA-SMPGLLHILDLSHNDLSGFIPPRVGNLS 201 (356)
Q Consensus 123 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~ 201 (356)
+..+|+|+.|.++++.-. .++. + .+++|+.|++..+.+.......+.. .++. |+.|+++.+.-.......+ .
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~-L~~L~L~~~~~~~~~~~~~---~ 240 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPN-LEKLVLYVGVEDYGFDGDM---N 240 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTT-CCEEEEECBCGGGTCCSCG---G
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCC-CcEEEEeccccccccchhH---H
Confidence 345667777777665211 2222 2 2667777777766654333223322 2333 7777764311000000000 0
Q ss_pred CCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhh---cccccCeEEccCCcCcCC----CC
Q 041463 202 DMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELT---SLVHLGTLNLSHNHLVGK----IP 274 (356)
Q Consensus 202 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~---~~~~L~~L~L~~n~i~~~----~~ 274 (356)
.+.. ......+++|+.|+|.+|.+.+..+..+. .+++|++|+|+.|.+.+. ++
T Consensus 241 ~l~~--------------------~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~ 300 (362)
T 2ra8_A 241 VFRP--------------------LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300 (362)
T ss_dssp GTGG--------------------GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH
T ss_pred HHHH--------------------HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH
Confidence 0000 00012467888899999888754333333 468899999999988753 23
Q ss_pred cCcCCCCCccEEEccCCcccccCCccccC-cCCCCEEEcccCc
Q 041463 275 EEIGNFEWLETLDLSKNKLSGSIPPSMAS-LIFMNHLNLSYNN 316 (356)
Q Consensus 275 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~l~~n~ 316 (356)
..+..+++|+.|++++|.+++.....+.. + ..++++++++
T Consensus 301 ~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp TTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 33355788999999999888654444433 2 3568888776
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.93 E-value=8.8e-08 Score=85.45 Aligned_cols=286 Identities=9% Similarity=0.105 Sum_probs=162.3
Q ss_pred cceEEEcccccccccCCchHHhhccCCcEeeccCC---ccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcc
Q 041463 4 ELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYN---ELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLK 79 (356)
Q Consensus 4 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 79 (356)
.|+++.+..+ ++..-..+|.++ .+|+.+.+..+ .++.....++ ++..|+.+.+..+- + .+ -...|..+.
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C-~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~-~-~I---~~~aF~~c~ 137 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNC-TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSV-T-EI---DSEAFHHCE 137 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTC-TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTC-S-EE---CTTTTTTCT
T ss_pred cCEEEEECCC-eeEEhHHHhhCC-ccCceEeecCCCCCeeeEechhhchhcccceeeccCCcc-c-ee---hhhhhhhhc
Confidence 4788888754 554455666666 78999988765 3554445555 57788877776542 1 11 124667778
Q ss_pred cccEEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEec
Q 041463 80 QLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLG 159 (356)
Q Consensus 80 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 159 (356)
+|+.+.+..+. .......|..+..|+.+.+..+ +......+|.. ..|+.+.+..+-.. .....+..+..+......
T Consensus 138 ~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 138 ELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSD 213 (394)
T ss_dssp TCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEEC
T ss_pred cccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceeccc
Confidence 88888876543 2244456777777777777654 33234444443 45666665443221 222333333333333322
Q ss_pred CCc------------------------------------ccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCC
Q 041463 160 DNN------------------------------------LSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDM 203 (356)
Q Consensus 160 ~~~------------------------------------l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L 203 (356)
... +. .+....+..+.. ++.+.+..... ......+..+..|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~-~i~~~aF~~c~~-L~~i~lp~~~~-~I~~~aF~~c~~L 290 (394)
T 4gt6_A 214 SESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVA-RIETHAFDSCAY-LASVKMPDSVV-SIGTGAFMNCPAL 290 (394)
T ss_dssp CSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEE-EECTTTTTTCSS-CCEEECCTTCC-EECTTTTTTCTTC
T ss_pred ccccccccceeecccccccccccccccccccceEEcCCcce-Ecccceeeeccc-ccEEecccccc-eecCccccccccc
Confidence 110 00 111222222222 67777754432 2444556666666
Q ss_pred cccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCc
Q 041463 204 KVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWL 283 (356)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L 283 (356)
+...... .+ .......|..+.+|+.+.+..+ ++.....+|.++.+|+++.+-.+ ++......|.++.+|
T Consensus 291 ~~i~l~~-----~i----~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 291 QDIEFSS-----RI----TELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp CEEECCT-----TC----CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred ccccCCC-----cc----cccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 5532221 00 1112345778899999999764 55566778999999999999654 554556789999999
Q ss_pred cEEEccCCcccccCCccccCcCCCCEEEcccCcc
Q 041463 284 ETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNL 317 (356)
Q Consensus 284 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 317 (356)
+.+++.++.... ..+..+..|+.+.+..+.+
T Consensus 360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 999999986542 3466778899988876544
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=1.9e-09 Score=94.52 Aligned_cols=134 Identities=13% Similarity=0.100 Sum_probs=61.2
Q ss_pred CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccccccccc--CCCCCcEEEcccC--cc-cc----cc
Q 041463 49 GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFS--NSSFLYILDMSNN--SL-SG----SI 119 (356)
Q Consensus 49 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~--~l~~L~~L~l~~~--~~-~~----~~ 119 (356)
.+++|+.|+++++.-. .++. + .+++|+.|++..+.+.......+. .+++|++|++..+ .. .+ ..
T Consensus 170 ~~P~L~~L~L~g~~~l-----~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-----SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp TCTTCCEEEEECCBTC-----BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred cCCCCcEEEEeCCCCc-----eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 3566666666655211 1111 2 256666666666555432222222 4566666665421 10 00 00
Q ss_pred cccc--cCCCCCcEEEeeccccccccCccc---cCCCCCcEEEecCCcccccCCchhhc---ccccceeEEEcccCccc
Q 041463 120 PESI--GSLRTLRFLVLRNNYLSGELPLSL---KNCTFMESLDLGDNNLSGNIPAWIGA---SMPGLLHILDLSHNDLS 190 (356)
Q Consensus 120 ~~~~--~~l~~L~~L~l~~~~l~~~~~~~l---~~l~~L~~L~l~~~~l~~~~~~~~~~---~~~~~L~~L~l~~~~l~ 190 (356)
...+ ..+++|++|.+.+|.+.+..+..+ ..+++|++|+++.|.+.+.....+.. .++ .|+.|+++.|.+.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~-~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK-HLKFINMKYNYLS 320 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHT-TCSEEECCSBBCC
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCC-cceEEECCCCcCC
Confidence 1111 135666666666666543222222 13456666666666655432222211 122 2666666666544
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.77 E-value=1.2e-06 Score=77.64 Aligned_cols=286 Identities=7% Similarity=-0.014 Sum_probs=160.2
Q ss_pred ccceEEEcccccccccCCchHHhhccCCcEeeccCCccCCcCCCCCCCCCCcEEecCCCcccCcCCCCCCcccCCccccc
Q 041463 3 TELRTLVLNKARISDTIPDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLI 82 (356)
Q Consensus 3 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 82 (356)
.+|+.+.+.. .++..-..+|.++ .+|+.+.+..+ ++.....++.-.+|+.+.+..+ +. .+. ..+|.. .+|+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C-~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~-~I~---~~aF~~-~~L~ 116 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSC-YNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VK-KFG---DYVFQG-TDLD 116 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTC-TTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CC-EEC---TTTTTT-CCCS
T ss_pred cCCEEEEeCC-CccChHHHHhhCC-CCCCEEEeCCc-ceEechhhhcCCCCceEECCce-ee-Eec---cceecc-CCcc
Confidence 4677887764 4554445556665 89999999754 6656666675457888887654 22 111 133443 4788
Q ss_pred EEecccccccccccccccCCCCCcEEEcccCcccccccccccCCCCCcEEEeecccccc------------ccCccccCC
Q 041463 83 TLVISNNNLSGEIPLLFSNSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSG------------ELPLSLKNC 150 (356)
Q Consensus 83 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~------------~~~~~l~~l 150 (356)
.+.+..+-.. .....|..+ .++.+.+..+ +......++..+.+++.+.+....... .....+...
T Consensus 117 ~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 8888765321 333344443 5666665543 333555667777777777765432210 111122333
Q ss_pred CCCcEEEecCCcccccCCchhhcccccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCcccccc
Q 041463 151 TFMESLDLGDNNLSGNIPAWIGASMPGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFT 230 (356)
Q Consensus 151 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (356)
..+..+.+..... .......... ..++.+.+..+ +.......+..+..|+....... ........+.
T Consensus 194 ~~~~~~~~~~~~~--~i~~~~f~~~-~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~---------v~~I~~~aF~ 260 (379)
T 4h09_A 194 KTGTEFTIPSTVK--TVTAYGFSYG-KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN---------VTSIGSFLLQ 260 (379)
T ss_dssp CCCSEEECCTTCC--EECTTTTTTC-SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT---------CCEECTTTTT
T ss_pred cccccccccccee--EEeecccccc-cccceeeeccc-eeEEccccccCCccceEEEcCCC---------ccEeCccccc
Confidence 4445544433321 1111111112 22566665433 22233344444444443211100 0011223456
Q ss_pred ccccccEEeecCCcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEE
Q 041463 231 TLYLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHL 310 (356)
Q Consensus 231 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 310 (356)
.+.+|+.+.+..+ +......+|.++.+|+.+.+.++.++......|.++.+|+.+.|..+ ++.....+|.+|.+|+.+
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 6677777777553 44455567788888888888887777555667888888888888754 555666778888888888
Q ss_pred EcccC
Q 041463 311 NLSYN 315 (356)
Q Consensus 311 ~l~~n 315 (356)
.+..+
T Consensus 339 ~ip~~ 343 (379)
T 4h09_A 339 SYPKS 343 (379)
T ss_dssp CCCTT
T ss_pred EECCc
Confidence 87543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.63 E-value=2.1e-05 Score=69.51 Aligned_cols=296 Identities=9% Similarity=0.038 Sum_probs=176.3
Q ss_pred hHHhhccCCcEeeccCCccCCcCCCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccccccccc
Q 041463 22 WFWQLSLTLDELDVAYNELRGRVPNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEIPLLFS 100 (356)
Q Consensus 22 ~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~ 100 (356)
++... .+|+.+.+.. .++.....+| ++.+|+.+.+..+ ++ .+. ..+|..+ +|+.+.+..+ +.......|.
T Consensus 41 ~~~~~-~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig---~~aF~~c-~l~~i~~~~~-l~~I~~~aF~ 111 (379)
T 4h09_A 41 WYKDR-DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIG---DGAFADT-KLQSYTGMER-VKKFGDYVFQ 111 (379)
T ss_dssp TGGGG-GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EEC---TTTTTTC-CCCEEEECTT-CCEECTTTTT
T ss_pred ccccc-cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-Eec---hhhhcCC-CCceEECCce-eeEeccceec
Confidence 34444 7899999975 4665666667 6899999999755 33 222 2456665 5777766543 3323344555
Q ss_pred CCCCCcEEEcccCcccccccccccCCCCCcEEEeeccccccccCccccCCCCCcEEEecCCcccccCCchhhccc-----
Q 041463 101 NSSFLYILDMSNNSLSGSIPESIGSLRTLRFLVLRNNYLSGELPLSLKNCTFMESLDLGDNNLSGNIPAWIGASM----- 175 (356)
Q Consensus 101 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~----- 175 (356)
. .+|+.+.+..+ +......+|.+. +++.+.+..+ ++......+..+..++...+.................
T Consensus 112 ~-~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (379)
T 4h09_A 112 G-TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL 187 (379)
T ss_dssp T-CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred c-CCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceeccccccee
Confidence 4 48999999875 333445556554 6776666544 3324455677788888888765432211100000000
Q ss_pred -----ccceeEEEcccCcccccCCCCcCCCCCCcccCCCCCccCCCeeeeecCCccccccccccccEEeecCCcccccCc
Q 041463 176 -----PGLLHILDLSHNDLSGFIPPRVGNLSDMKVEPPKSVQHEGRLRVVTKGSERKYFTTLYLVNLLDLSSTNLSAEIP 250 (356)
Q Consensus 176 -----~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 250 (356)
...+..+.+.... .......+.....++...... .. .......+..+..|+.+.+..+ ++....
T Consensus 188 ~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~-----~~----~~i~~~~f~~~~~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITS-----GV----TTLGDGAFYGMKALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp EECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCT-----TC----CEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred ccccccccccccccccce-eEEeecccccccccceeeecc-----ce----eEEccccccCCccceEEEcCCC-ccEeCc
Confidence 0012233222211 112222333333333211110 00 0112234567788999988765 555666
Q ss_pred hhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCcccccCCCC-cccCc
Q 041463 251 AELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLSGEIPNT-NQFQT 329 (356)
Q Consensus 251 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~ 329 (356)
.+|..+.+|+.+.+..+ +.......|..+++|+.+.+.++.++......|.++.+|+.+++..+ ++..-... ...+.
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 78888899999999654 44355568899999999999999998778889999999999999754 55443333 55677
Q ss_pred CCCccccccCccccC
Q 041463 330 LNDPSIYEGNLALCG 344 (356)
Q Consensus 330 l~~~~~~~~~~~~~~ 344 (356)
|+.+. +-.++...|
T Consensus 335 L~~i~-ip~~v~~I~ 348 (379)
T 4h09_A 335 LSTIS-YPKSITLIE 348 (379)
T ss_dssp CCCCC-CCTTCCEEC
T ss_pred CCEEE-ECCccCEEc
Confidence 77766 444554443
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.61 E-value=4.9e-09 Score=81.10 Aligned_cols=84 Identities=11% Similarity=0.118 Sum_probs=70.7
Q ss_pred ccccEEeecCCcccccCchhhhcccccCeEEccCCc-CcCCCCcCcCCC----CCccEEEccCC-cccccCCccccCcCC
Q 041463 233 YLVNLLDLSSTNLSAEIPAELTSLVHLGTLNLSHNH-LVGKIPEEIGNF----EWLETLDLSKN-KLSGSIPPSMASLIF 306 (356)
Q Consensus 233 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~----~~L~~L~L~~n-~i~~~~~~~~~~l~~ 306 (356)
..|+.|++++|.+++.....+.++++|++|+|++|. |++.....++.+ ++|++|+|++| +||+.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999999987766778899999999999996 776554555554 47999999999 599777777888999
Q ss_pred CCEEEcccCc
Q 041463 307 MNHLNLSYNN 316 (356)
Q Consensus 307 L~~L~l~~n~ 316 (356)
|++|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999996
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=3.6e-09 Score=83.81 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=81.2
Q ss_pred cCCcEeeccCC-ccCCcCCC----CC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccc----ccc
Q 041463 28 LTLDELDVAYN-ELRGRVPN----SL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE----IPL 97 (356)
Q Consensus 28 ~~L~~L~l~~~-~~~~~~~~----~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~----~~~ 97 (356)
+.|++|+|++| .+.+.... .+ ..++|++|+|++|.+.......+...+...+.|++|++++|.+.+. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 68899999888 77643222 22 4678999999999886543323344555667899999999988743 345
Q ss_pred cccCCCCCcEEEc--ccCcccccc----cccccCCCCCcEEEeeccccc
Q 041463 98 LFSNSSFLYILDM--SNNSLSGSI----PESIGSLRTLRFLVLRNNYLS 140 (356)
Q Consensus 98 ~~~~l~~L~~L~l--~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~ 140 (356)
.+...+.|++|++ ++|.+.+.. ...+...++|++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5677788999999 888887543 334455688999999998875
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=1.2e-08 Score=80.80 Aligned_cols=114 Identities=15% Similarity=0.106 Sum_probs=57.3
Q ss_pred CCCCcEEecCCC-cccCcCCCCCCcccCCcccccEEeccccccccc----ccccccCCCCCcEEEcccCccccc----cc
Q 041463 50 FNFPATVDLSSN-NFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE----IPLLFSNSSFLYILDMSNNSLSGS----IP 120 (356)
Q Consensus 50 ~~~L~~L~l~~n-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~ 120 (356)
.+.|++|++++| .+.......+...+...++|++|++++|.+.+. +...+...+.|++|++++|.+.+. ..
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 566666777666 554322212233444556666666666665432 122334445566666666665532 22
Q ss_pred ccccCCCCCcEEEe--eccccccc----cCccccCCCCCcEEEecCCcc
Q 041463 121 ESIGSLRTLRFLVL--RNNYLSGE----LPLSLKNCTFMESLDLGDNNL 163 (356)
Q Consensus 121 ~~~~~l~~L~~L~l--~~~~l~~~----~~~~l~~l~~L~~L~l~~~~l 163 (356)
..+...++|++|++ ++|.+.+. +...+...++|+.|++++|.+
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 33444455666666 55555432 122333345555555555554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=4.6e-08 Score=81.46 Aligned_cols=79 Identities=24% Similarity=0.302 Sum_probs=57.4
Q ss_pred hcccccCeEEccCCcCcC--CCCcCcCCCCCccEEEccCCcccccCCccccCcC--CCCEEEcccCcccccCCC------
Q 041463 254 TSLVHLGTLNLSHNHLVG--KIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLI--FMNHLNLSYNNLSGEIPN------ 323 (356)
Q Consensus 254 ~~~~~L~~L~L~~n~i~~--~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~------ 323 (356)
..+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|++++. ..+..+. +|++|++++|++.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 557889999999998875 2345556788999999999988854 2234444 889999999998876653
Q ss_pred --CcccCcCCCcc
Q 041463 324 --TNQFQTLNDPS 334 (356)
Q Consensus 324 --~~~l~~l~~~~ 334 (356)
...+++|+.++
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 25667776655
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=1.3e-07 Score=73.14 Aligned_cols=84 Identities=7% Similarity=0.052 Sum_probs=53.6
Q ss_pred ccccEEecccccccccccccccCCCCCcEEEcccCc-ccccccccccCC----CCCcEEEeeccc-cccccCccccCCCC
Q 041463 79 KQLITLVISNNNLSGEIPLLFSNSSFLYILDMSNNS-LSGSIPESIGSL----RTLRFLVLRNNY-LSGELPLSLKNCTF 152 (356)
Q Consensus 79 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-l~~~~~~~l~~l~~ 152 (356)
.+|+.|++++|.+++.....+..+++|++|++++|. +++..-..++.+ ++|++|++++|. +++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 456777777776665555556667777777777774 555444445443 357777777764 66544455666777
Q ss_pred CcEEEecCCc
Q 041463 153 MESLDLGDNN 162 (356)
Q Consensus 153 L~~L~l~~~~ 162 (356)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=6.9e-07 Score=74.33 Aligned_cols=81 Identities=23% Similarity=0.211 Sum_probs=64.2
Q ss_pred cccccccEEeecCCccccc--CchhhhcccccCeEEccCCcCcCCCCcCcCCCC--CccEEEccCCcccccCCc------
Q 041463 230 TTLYLVNLLDLSSTNLSAE--IPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFE--WLETLDLSKNKLSGSIPP------ 299 (356)
Q Consensus 230 ~~~~~L~~L~L~~~~l~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~------ 299 (356)
..+++|+.|+|++|.+.+. ++..+..+++|+.|+|++|.|.+. ..+..+. +|+.|+|++|.+++..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4678999999999999873 346677899999999999999854 2333333 899999999999876552
Q ss_pred -cccCcCCCCEEEc
Q 041463 300 -SMASLIFMNHLNL 312 (356)
Q Consensus 300 -~~~~l~~L~~L~l 312 (356)
.+..+|+|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 4667899998863
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.96 E-value=8.1e-06 Score=60.13 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=32.0
Q ss_pred eEEccCCcCc-CCCCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcccCccc
Q 041463 261 TLNLSHNHLV-GKIPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLSYNNLS 318 (356)
Q Consensus 261 ~L~L~~n~i~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 318 (356)
.++-+++.++ ..+|..+ -++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 2344332 125677777777776555556666666666666655554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.65 E-value=5.7e-06 Score=65.16 Aligned_cols=112 Identities=12% Similarity=0.056 Sum_probs=65.7
Q ss_pred cCCcEeeccCC-ccCCcC----CCCC-CCCCCcEEecCCCcccCcCCCCCCcccCCcccccEEeccccccccc----ccc
Q 041463 28 LTLDELDVAYN-ELRGRV----PNSL-GFNFPATVDLSSNNFEGRLPLCIPKSIGNLKQLITLVISNNNLSGE----IPL 97 (356)
Q Consensus 28 ~~L~~L~l~~~-~~~~~~----~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~----~~~ 97 (356)
+.|++|+|+++ .+.+.. .+.+ .-+.|+.|+|++|.+.......+.+.+..-+.|+.|+|++|.|.+. +..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 46777777764 554321 1222 3567777777777776544434445555566778888888877633 223
Q ss_pred cccCCCCCcEEEcccC---ccccc----ccccccCCCCCcEEEeecccc
Q 041463 98 LFSNSSFLYILDMSNN---SLSGS----IPESIGSLRTLRFLVLRNNYL 139 (356)
Q Consensus 98 ~~~~l~~L~~L~l~~~---~~~~~----~~~~~~~l~~L~~L~l~~~~l 139 (356)
.+..-..|++|+++++ .+.+. ....+..-+.|+.|+++.+.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 4555566888888754 33322 223344456788888776544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.11 E-value=6.5e-05 Score=59.14 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=41.2
Q ss_pred CCCCcEEecCCC-cccCcCCCCCCcccCCcccccEEecccccccccc----cccccCCCCCcEEEcccCccccccc----
Q 041463 50 FNFPATVDLSSN-NFEGRLPLCIPKSIGNLKQLITLVISNNNLSGEI----PLLFSNSSFLYILDMSNNSLSGSIP---- 120 (356)
Q Consensus 50 ~~~L~~L~l~~n-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~---- 120 (356)
-+.|++|+++++ .+.......+.+.+..-+.|+.|+|++|.+.+.. ...+..-+.|++|+|++|.|.+...
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 356666666654 4432221122334444555666666666654322 2223344556666666665543221
Q ss_pred ccccCCCCCcEEEeec
Q 041463 121 ESIGSLRTLRFLVLRN 136 (356)
Q Consensus 121 ~~~~~l~~L~~L~l~~ 136 (356)
.++..-..|++|.+++
T Consensus 120 ~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHTTTTCCCSEEECCC
T ss_pred HHHhhCCceeEEECCC
Confidence 2233334455555543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.01 E-value=0.0016 Score=47.63 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=42.9
Q ss_pred cEEeecCCccc-ccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCCccc
Q 041463 236 NLLDLSSTNLS-AEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKNKLS 294 (356)
Q Consensus 236 ~~L~L~~~~l~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~i~ 294 (356)
..++.++..++ ..+|..+. ++|++|+|++|.|+...+..|..+++|+.|+|.+|...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36888888876 23444332 46899999999998555667788899999999999775
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=75.94 E-value=4.4 Score=27.55 Aligned_cols=40 Identities=8% Similarity=0.021 Sum_probs=19.4
Q ss_pred CCcCcCCCCCccEEEccCCcccccCCccccCcCCCCEEEcc
Q 041463 273 IPEEIGNFEWLETLDLSKNKLSGSIPPSMASLIFMNHLNLS 313 (356)
Q Consensus 273 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 313 (356)
....|.++.+|+.+.|-.+ ++.+....|.+|.+|+.+.+.
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3344555555555555543 222444455555555555554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.51 E-value=15 Score=24.77 Aligned_cols=48 Identities=10% Similarity=-0.038 Sum_probs=34.7
Q ss_pred CcccccCchhhhcccccCeEEccCCcCcCCCCcCcCCCCCccEEEccCC
Q 041463 243 TNLSAEIPAELTSLVHLGTLNLSHNHLVGKIPEEIGNFEWLETLDLSKN 291 (356)
Q Consensus 243 ~~l~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n 291 (356)
..++.+...+|.++.+|+++.+-.+- +.+....|..|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 34555556678888888888887653 3355668888888998888765
No 167
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=33.35 E-value=6.5 Score=18.40 Aligned_cols=8 Identities=25% Similarity=0.605 Sum_probs=5.8
Q ss_pred ccCCCCCC
Q 041463 342 LCGDPLPK 349 (356)
Q Consensus 342 ~~~~~~~~ 349 (356)
.|||.|-|
T Consensus 17 ncgnswac 24 (27)
T 2hgo_A 17 NCGNSWAC 24 (27)
T ss_dssp SSSCEEEC
T ss_pred CcCCcccc
Confidence 47888876
No 168
>1w9n_A Epilancin 15X; antibiotic, type A lantibiotic, lanthionine, antibacterial,; HET: 2OP DBU DBB; NMR {Staphylococcus epidermidis}
Probab=31.12 E-value=31 Score=16.85 Aligned_cols=16 Identities=38% Similarity=0.650 Sum_probs=12.5
Q ss_pred ccc-CCCCCCCCCCCCC
Q 041463 341 ALC-GDPLPKKCPENGG 356 (356)
Q Consensus 341 ~~~-~~~~~~~c~~~~~ 356 (356)
-+| |..+.|-|..+++
T Consensus 14 k~Ckg~tLtCgC~~tg~ 30 (31)
T 1w9n_A 14 KLCRGFXLXCGCHFXGK 30 (31)
T ss_dssp SSCSSSSSSSSCCCSCC
T ss_pred HHhccccEEEEEEecCC
Confidence 456 7889999988775
Done!