BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041464
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2GA61|HTPX_LACF3 Protease HtpX homolog OS=Lactobacillus fermentum (strain NBRC 3956
/ LMG 18251) GN=htpX PE=3 SV=1
Length = 299
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 42 ANEI-GAEYTPNFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQ 100
A EI A+ P +W + + R +P+V IDD P A T NN H
Sbjct: 71 AREIHSADEAPE-LWHIVEDMALVARVPMPRV-FIIDDPSPNAFA-TGNNPQHAAVAATT 127
Query: 101 NIPVDLIKQEFSGVMYHEMTHA-NY 124
+ + ++E VM HEMTH NY
Sbjct: 128 GLLAIMNREELESVMAHEMTHVRNY 152
>sp|Q2T2A9|HTPX_BURTA Protease HtpX homolog OS=Burkholderia thailandensis (strain E264 /
ATCC 700388 / DSM 13276 / CIP 106301) GN=htpX PE=3 SV=1
Length = 285
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 42 ANEIGAEYTPNFIWRLFQQNTEADRKNIPQVDLF-IDDMKPGEIAFTSNNGIHYGDDFIQ 100
A E+ P F +R+ ++ A R N+P ++ ID+ +P A T N H
Sbjct: 59 AQEVDETTAPQF-YRMVRE--LATRANLPMPRVYLIDESQPNAFA-TGRNPEHAAVAATT 114
Query: 101 NIPVDLIKQEFSGVMYHEMTHANY 124
I L ++E GVM HE+ H +
Sbjct: 115 GILRVLSEREMRGVMAHELAHVKH 138
>sp|Q8Y3A6|HTPX_RALSO Protease HtpX homolog OS=Ralstonia solanacearum (strain GMI1000)
GN=htpX PE=3 SV=1
Length = 286
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 42 ANEIGAEYTPNFIWRLFQQNTEADRKNIPQVDLF-IDDMKPGEIAFTSNNGIHYGDDFIQ 100
A E+ P F +R+ Q+ A R +P ++ ID+ +P A T N H
Sbjct: 59 AQEVSETTAPQF-YRMVQE--LAGRAGLPMPRVYLIDEAQPNAFA-TGRNPEHAAVAATT 114
Query: 101 NIPVDLIKQEFSGVMYHEMTHANY 124
I L ++E GVM HE+ H +
Sbjct: 115 GILNILSERELRGVMAHELAHVQH 138
>sp|Q88Z48|HTPX_LACPL Protease HtpX homolog OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=htpX PE=3 SV=1
Length = 299
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 54 IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 113
+W + + + +P+V IDD P A T N+ H I L ++E G
Sbjct: 83 LWHIVEDMALVAKVPMPRV-FIIDDESPNAFA-TGNDPEHAAVAVTTGIQARLTREEMEG 140
Query: 114 VMYHEMTHA-NY 124
V+ HEM+H NY
Sbjct: 141 VIGHEMSHVRNY 152
>sp|B2U793|HTPX_RALPJ Protease HtpX homolog OS=Ralstonia pickettii (strain 12J) GN=htpX
PE=3 SV=1
Length = 286
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 42 ANEIGAEYTPNFIWRLFQQNTEADRKNIPQVDLF-IDDMKPGEIAFTSNNGIHYGDDFIQ 100
A E+ P F +R+ Q+ A R +P ++ ID+ +P A T N H
Sbjct: 59 AQEVNETSAPQF-YRMVQE--LAGRAGLPMPRVYLIDEAQPNAFA-TGRNPEHAAVAATT 114
Query: 101 NIPVDLIKQEFSGVMYHEMTHANY 124
I L ++E GVM HE+ H +
Sbjct: 115 GILNILSERELRGVMAHELAHVQH 138
>sp|Q03T13|HTPX_LACBA Protease HtpX homolog OS=Lactobacillus brevis (strain ATCC 367 /
JCM 1170) GN=htpX PE=3 SV=1
Length = 298
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 38 GMRFANEIGAEYTPNFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDD 97
M A EI +W L + + +P+V IDD P A T N+ H
Sbjct: 67 SMNHAREIKDVSQAPQLWHLIEDMALVAQVPMPRV-FIIDDPSPNAFA-TGNDPKHAAVA 124
Query: 98 FIQNIPVDLIKQEFSGVMYHEMTHA-NY 124
I L ++E GV+ HEM+H NY
Sbjct: 125 VTTGIMERLNREELEGVIGHEMSHVRNY 152
>sp|Q47BD0|ACEK_DECAR Isocitrate dehydrogenase kinase/phosphatase OS=Dechloromonas
aromatica (strain RCB) GN=aceK PE=3 SV=1
Length = 593
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 17/122 (13%)
Query: 67 KNIPQVDLFIDDM--------KPGEIAFTSNNGIHYGDD--FIQNIPVDLIKQEFSGVMY 116
+ + Q ++F DM + G + F + I Y D F Q P + E SG ++
Sbjct: 459 REMAQANIFPGDMLWKNFGVTRFGRVVFYDYDEIEYMTDIKFRQIPPAPDFETEMSGEVW 518
Query: 117 HEMTHANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNG-FVAELNKKMRDGYNDN 175
+ ++ + PE +A + V F+ Y DL + F E +K+R GY ++
Sbjct: 519 YAVSRNDVFPEEFAT------FLLTSPQVRKIFIKYHKDLLSPRFWLEAQEKIRSGYVED 572
Query: 176 FF 177
FF
Sbjct: 573 FF 574
>sp|P35262|L_MABVP RNA-directed RNA polymerase L OS=Lake Victoria marburgvirus (strain
Popp-67) GN=L PE=3 SV=1
Length = 2331
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 140 QGHSSVAARFLDYCN-----DLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQ 187
QG + + LDY N DLRN F+ L K+ YND + L+ K++++
Sbjct: 2206 QGKQHLHSLMLDYENNSPLLDLRNHFICSLRGKITKYYNDILKLNLVIKAVEK 2258
>sp|Q1PD54|L_MABVA RNA-directed RNA polymerase L OS=Lake Victoria marburgvirus (strain
Angola/2005) GN=L PE=3 SV=1
Length = 2331
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 140 QGHSSVAARFLDYCN-----DLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQ 187
QG + + LDY N DLRN F+ L K+ YND + L+ K++++
Sbjct: 2206 QGKQHLHSLMLDYENNSPLLDLRNHFICSLRGKITKYYNDILKLNLVIKAVEK 2258
>sp|Q1WV87|HTPX_LACS1 Protease HtpX homolog OS=Lactobacillus salivarius (strain UCC118)
GN=htpX PE=3 SV=1
Length = 295
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 39 MRFANEIGAEYTPNFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDF 98
M A EI + P +W + + + +P+V IDD P A T + H
Sbjct: 68 MNNAQEITEQQAPE-LWHIVEDMAMVGKVPMPRV-FIIDDPSPNAFA-TGPDPEHAAVAA 124
Query: 99 IQNIPVDLIKQEFSGVMYHEMTH 121
I L ++E GVM HE++H
Sbjct: 125 TTGILQRLNREELEGVMAHEVSH 147
>sp|Q6UX39|AMTN_HUMAN Amelotin OS=Homo sapiens GN=AMTN PE=1 SV=1
Length = 209
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 7 FFLISLLTLTAMQGIHAVDYTVSNRAATTPG---------GMRFANEIGAEYTPNFIWRL 57
F +SL+ LT M + + ++ A TPG G+ ++ P F+ +L
Sbjct: 48 FPSLSLIPLTQMLTLGPDLHLLNPAAGMTPGTQTHPLTLGGLNVQQQLHPHVLPIFVTQL 107
Query: 58 FQQNTEADRKNIPQV--DLFIDDMKPGEIAFTSNNG 91
Q T + +PQ+ L I + PG I TS G
Sbjct: 108 GAQGTILSSEELPQIFTSLIIHSLFPGGILPTSQAG 143
>sp|B2G5L7|HTPX_LACRJ Protease HtpX homolog OS=Lactobacillus reuteri (strain JCM 1112)
GN=htpX PE=3 SV=1
Length = 298
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 39 MRFANEIGAEYTPNFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDF 98
M A E+ + +W + + R +P+V I D P A T N+ H
Sbjct: 68 MNNATEVRSASDAPELWHIVEDMALVARVPMPKV-YIIHDPSPNAFA-TGNDPEHAAVAA 125
Query: 99 IQNIPVDLIKQEFSGVMYHEMTHA-NY 124
+ + ++E GVM HEMTH NY
Sbjct: 126 TTGLMEKMNREELEGVMAHEMTHVRNY 152
>sp|A5VI38|HTPX_LACRD Protease HtpX homolog OS=Lactobacillus reuteri (strain DSM 20016)
GN=htpX PE=3 SV=1
Length = 298
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 39 MRFANEIGAEYTPNFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDF 98
M A E+ + +W + + R +P+V I D P A T N+ H
Sbjct: 68 MNNATEVRSASDAPELWHIVEDMALVARVPMPKV-YIIHDPSPNAFA-TGNDPEHAAVAA 125
Query: 99 IQNIPVDLIKQEFSGVMYHEMTHA-NY 124
+ + ++E GVM HEMTH NY
Sbjct: 126 TTGLMEKMNREELEGVMAHEMTHVRNY 152
>sp|Q6UY63|L_MABVO RNA-directed RNA polymerase L OS=Lake Victoria marburgvirus (strain
Ozolin-75) GN=L PE=3 SV=1
Length = 2331
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 140 QGHSSVAARFLDYCN-----DLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQ 187
QG + + LDY N DLRN F+ L K+ YND + L+ K++++
Sbjct: 2206 QGKQHLHSLMLDYENNSPLLDLRNHFICSLRGKITKYYNDILKLNLVIKAVEK 2258
>sp|P31352|L_MABVM RNA-directed RNA polymerase L OS=Lake Victoria marburgvirus (strain
Musoke-80) GN=L PE=3 SV=2
Length = 2331
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 140 QGHSSVAARFLDYCN-----DLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQ 187
QG + + LDY N DLRN F+ L K+ YND + L+ K++++
Sbjct: 2206 QGKQHLHSLMLDYENNSPLLDLRNHFICSLRGKITKYYNDILKLNLVIKAVEK 2258
>sp|Q1PDC4|L_MABVR RNA-directed RNA polymerase L OS=Lake Victoria marburgvirus (strain
Ravn-87) GN=L PE=3 SV=1
Length = 2327
Score = 31.6 bits (70), Expect = 4.1, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 140 QGHSSVAARFLDYCN-----DLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQ 187
QG + + LDY N DLRN F+ L K+ YND + L+ +++++
Sbjct: 2206 QGRQHLHSLMLDYENNSPLLDLRNHFICSLRGKITKYYNDILKLNLVVRAVER 2258
>sp|Q1QLA8|SYP_NITHX Proline--tRNA ligase OS=Nitrobacter hamburgensis (strain X14 / DSM
10229) GN=proS PE=3 SV=1
Length = 439
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 23/136 (16%)
Query: 85 AFTSNNGIHYGDDFIQNIP---------VDLIKQEFSGVMYHEMTHANYV-PEGWAKPGE 134
A+ + +H G + + +P +++ + + G Y E A P+G +P
Sbjct: 253 AYAATEDVHDGARYEREVPEERRVHTRGIEVGQIFYFGTKYSESMKALVAGPDGVEQPIH 312
Query: 135 GTMWNQGHSSVAARFLDYCND---------LRNGFVAELNKKMRDGYND----NFFMELL 181
G + G S + ++ C+D + VA LN K G D + EL
Sbjct: 313 GGSYGVGVSRLVGAIIEACHDDAGIKWPEAVAPFTVAILNLKQGAGDTDAACERLYRELS 372
Query: 182 GKSIDQLWNDYKAKYG 197
K +D L++D + G
Sbjct: 373 AKGVDVLYDDTDQRAG 388
>sp|Q5ZJF4|PRDX6_CHICK Peroxiredoxin-6 OS=Gallus gallus GN=PRDX6 PE=2 SV=3
Length = 224
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 18 MQGIHAVDYTVSNRAATTPGGMRFANEIG----------AEYTP---NFIWRLFQQNTEA 64
M G+ D + A TT GG+RF + +G ++TP + R + E
Sbjct: 1 MPGLLLGDEAPNFEADTTQGGIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEF 60
Query: 65 DRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLI 107
++N+ + L ID + P +A++ + + GD ++ +P +I
Sbjct: 61 SKRNVKMIALSIDSV-PDHLAWSKDINAYNGDQPVEKLPFPII 102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,824,370
Number of Sequences: 539616
Number of extensions: 3361357
Number of successful extensions: 7394
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 7393
Number of HSP's gapped (non-prelim): 20
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)