Query 041465
Match_columns 216
No_of_seqs 246 out of 1201
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.5 1.9E-13 4E-18 130.2 11.8 107 9-133 611-718 (1153)
2 PLN03210 Resistant to P. syrin 99.5 1.7E-13 3.7E-18 130.4 11.5 61 7-73 632-694 (1153)
3 PLN00113 leucine-rich repeat r 99.2 5.1E-11 1.1E-15 112.1 9.3 160 8-181 117-295 (968)
4 PLN00113 leucine-rich repeat r 99.2 6.8E-11 1.5E-15 111.3 9.7 159 8-181 92-271 (968)
5 KOG4194 Membrane glycoprotein 98.7 2.3E-08 4.9E-13 86.7 4.5 159 9-180 173-351 (873)
6 KOG4194 Membrane glycoprotein 98.6 3.8E-09 8.3E-14 91.4 -1.5 37 143-181 391-427 (873)
7 KOG3207 Beta-tubulin folding c 98.6 7.9E-09 1.7E-13 86.5 -0.2 189 8-210 120-309 (505)
8 PRK15370 E3 ubiquitin-protein 98.6 1.2E-07 2.7E-12 86.5 7.2 56 8-72 198-253 (754)
9 PRK15370 E3 ubiquitin-protein 98.5 2.8E-07 6.1E-12 84.2 6.6 53 144-212 325-377 (754)
10 PF13855 LRR_8: Leucine rich r 98.5 1.4E-07 3.1E-12 58.7 3.0 60 9-71 1-60 (61)
11 KOG0617 Ras suppressor protein 98.4 5.5E-09 1.2E-13 77.8 -4.7 78 10-100 34-111 (264)
12 KOG3207 Beta-tubulin folding c 98.4 1.3E-07 2.7E-12 79.4 2.5 136 7-155 170-312 (505)
13 KOG0617 Ras suppressor protein 98.4 1.5E-08 3.2E-13 75.5 -3.2 135 8-161 55-189 (264)
14 KOG0444 Cytoskeletal regulator 98.2 1.6E-07 3.4E-12 82.5 -0.7 90 88-186 170-260 (1255)
15 PRK15387 E3 ubiquitin-protein 98.2 4.7E-06 1E-10 76.3 8.4 52 9-71 222-273 (788)
16 PRK15387 E3 ubiquitin-protein 98.2 5.3E-06 1.1E-10 76.0 8.4 146 6-186 239-397 (788)
17 cd00116 LRR_RI Leucine-rich re 98.2 5.3E-07 1.1E-11 74.2 1.5 61 119-181 193-261 (319)
18 PF13855 LRR_8: Leucine rich r 98.2 2E-06 4.3E-11 53.4 3.5 59 35-101 1-59 (61)
19 KOG4658 Apoptotic ATPase [Sign 98.2 1.9E-06 4.1E-11 80.1 4.2 70 117-189 715-789 (889)
20 PRK15386 type III secretion pr 98.1 1.2E-05 2.6E-10 68.3 7.7 56 8-73 51-107 (426)
21 KOG0444 Cytoskeletal regulator 98.0 3.2E-07 7E-12 80.6 -3.6 126 37-179 152-277 (1255)
22 cd00116 LRR_RI Leucine-rich re 98.0 1.5E-06 3.3E-11 71.5 0.1 89 118-212 164-260 (319)
23 KOG4658 Apoptotic ATPase [Sign 98.0 6.7E-06 1.5E-10 76.5 4.3 64 34-107 570-634 (889)
24 PF14580 LRR_9: Leucine-rich r 97.9 1.7E-05 3.8E-10 60.0 5.2 105 10-130 20-124 (175)
25 KOG2120 SCF ubiquitin ligase, 97.8 9E-07 2E-11 71.3 -4.1 135 35-180 234-373 (419)
26 KOG0618 Serine/threonine phosp 97.8 6.7E-07 1.5E-11 81.2 -5.7 41 140-182 448-488 (1081)
27 KOG0618 Serine/threonine phosp 97.8 3.4E-06 7.4E-11 76.8 -1.3 131 6-156 356-488 (1081)
28 PF14580 LRR_9: Leucine-rich r 97.7 2.2E-05 4.9E-10 59.3 3.0 130 34-180 18-150 (175)
29 KOG3665 ZYG-1-like serine/thre 97.6 2.4E-05 5.1E-10 71.2 1.0 135 33-180 120-260 (699)
30 KOG4341 F-box protein containi 97.5 1.3E-06 2.7E-11 73.2 -7.0 68 5-73 160-229 (483)
31 PRK15386 type III secretion pr 97.5 0.00021 4.6E-09 60.8 5.9 70 34-127 51-120 (426)
32 KOG3665 ZYG-1-like serine/thre 97.4 5.2E-05 1.1E-09 69.0 0.8 157 9-182 122-287 (699)
33 KOG0472 Leucine-rich repeat pr 97.3 3.1E-06 6.6E-11 70.8 -7.3 59 117-181 250-308 (565)
34 KOG0532 Leucine-rich repeat (L 97.3 1.6E-05 3.4E-10 69.3 -3.5 80 8-101 97-176 (722)
35 KOG4237 Extracellular matrix p 97.2 0.00021 4.6E-09 59.9 2.1 83 7-99 272-354 (498)
36 KOG2120 SCF ubiquitin ligase, 97.2 2.2E-05 4.8E-10 63.5 -3.6 135 9-155 234-374 (419)
37 KOG0472 Leucine-rich repeat pr 96.9 0.00024 5.3E-09 59.8 0.2 117 48-182 424-540 (565)
38 PLN03150 hypothetical protein; 96.9 0.0022 4.7E-08 58.2 6.1 34 37-72 420-454 (623)
39 PF12799 LRR_4: Leucine Rich r 96.9 0.0013 2.8E-08 37.9 3.1 36 36-73 2-37 (44)
40 COG4886 Leucine-rich repeat (L 96.8 0.00081 1.8E-08 57.3 2.9 80 8-100 115-195 (394)
41 KOG2982 Uncharacterized conser 96.8 0.0011 2.4E-08 53.9 3.2 68 117-186 197-265 (418)
42 PF12799 LRR_4: Leucine Rich r 96.8 0.0016 3.4E-08 37.5 3.0 40 9-51 1-40 (44)
43 COG4886 Leucine-rich repeat (L 96.6 0.0015 3.1E-08 55.7 2.4 59 10-73 141-199 (394)
44 KOG1259 Nischarin, modulator o 96.5 0.00026 5.6E-09 57.6 -2.1 126 36-181 285-410 (490)
45 PLN03150 hypothetical protein; 96.5 0.0067 1.4E-07 55.1 6.2 59 34-101 441-500 (623)
46 KOG4341 F-box protein containi 96.3 0.0024 5.1E-08 54.1 2.1 13 6-18 213-225 (483)
47 KOG1947 Leucine rich repeat pr 96.1 0.00091 2E-08 58.0 -1.4 142 34-180 187-331 (482)
48 KOG1947 Leucine rich repeat pr 96.0 0.0014 3E-08 56.9 -0.6 144 34-183 160-308 (482)
49 KOG1259 Nischarin, modulator o 95.9 0.0018 3.8E-08 52.9 -0.6 126 8-155 283-410 (490)
50 KOG3864 Uncharacterized conser 95.7 0.0008 1.7E-08 51.6 -3.0 64 88-153 122-185 (221)
51 KOG2982 Uncharacterized conser 95.6 0.0012 2.6E-08 53.7 -2.3 40 33-73 69-110 (418)
52 KOG4237 Extracellular matrix p 95.4 0.00075 1.6E-08 56.7 -4.4 67 35-109 67-133 (498)
53 KOG2123 Uncharacterized conser 95.4 0.00084 1.8E-08 54.1 -4.0 36 34-72 18-53 (388)
54 KOG3864 Uncharacterized conser 94.8 0.0044 9.6E-08 47.6 -1.3 67 117-184 123-190 (221)
55 KOG1644 U2-associated snRNP A' 94.2 0.094 2E-06 40.5 4.7 106 36-154 43-150 (233)
56 KOG1644 U2-associated snRNP A' 94.1 0.076 1.7E-06 41.0 4.0 107 10-128 43-149 (233)
57 PF13504 LRR_7: Leucine rich r 93.7 0.05 1.1E-06 24.4 1.4 13 36-48 2-14 (17)
58 KOG0532 Leucine-rich repeat (L 93.7 0.011 2.4E-07 52.0 -1.4 150 8-180 120-270 (722)
59 KOG2123 Uncharacterized conser 92.6 0.0091 2E-07 48.3 -3.2 62 8-73 40-101 (388)
60 KOG0531 Protein phosphatase 1, 92.4 0.078 1.7E-06 45.7 2.0 61 7-73 93-153 (414)
61 KOG1909 Ran GTPase-activating 92.1 0.11 2.3E-06 43.3 2.3 37 35-71 92-131 (382)
62 PF13306 LRR_5: Leucine rich r 91.5 1.5 3.2E-05 30.6 7.5 11 58-68 33-43 (129)
63 KOG2739 Leucine-rich acidic nu 91.5 0.11 2.4E-06 41.4 1.7 111 8-131 42-155 (260)
64 KOG1859 Leucine-rich repeat pr 91.2 0.0049 1.1E-07 55.8 -6.8 107 57-181 184-290 (1096)
65 PF13306 LRR_5: Leucine rich r 91.0 0.63 1.4E-05 32.5 5.2 105 55-178 7-111 (129)
66 KOG1859 Leucine-rich repeat pr 90.2 0.03 6.6E-07 51.0 -2.8 61 7-73 185-245 (1096)
67 KOG2739 Leucine-rich acidic nu 89.8 0.25 5.5E-06 39.4 2.3 133 36-184 19-157 (260)
68 PF00560 LRR_1: Leucine Rich R 88.6 0.43 9.3E-06 22.7 1.9 9 121-129 2-10 (22)
69 KOG4579 Leucine-rich repeat (L 85.5 0.17 3.6E-06 37.0 -0.9 57 36-101 54-110 (177)
70 smart00367 LRR_CC Leucine-rich 85.4 0.45 9.8E-06 23.6 0.9 15 144-158 2-16 (26)
71 KOG1909 Ran GTPase-activating 83.3 0.095 2.1E-06 43.6 -3.3 116 8-130 184-309 (382)
72 KOG0531 Protein phosphatase 1, 83.0 0.39 8.5E-06 41.4 0.1 61 6-73 115-175 (414)
73 smart00370 LRR Leucine-rich re 81.1 1.4 3.1E-05 21.6 1.8 17 36-52 3-19 (26)
74 smart00369 LRR_TYP Leucine-ric 81.1 1.4 3.1E-05 21.6 1.8 17 36-52 3-19 (26)
75 KOG3763 mRNA export factor TAP 75.6 0.72 1.6E-05 40.8 -0.5 87 6-97 215-307 (585)
76 KOG4579 Leucine-rich repeat (L 71.4 0.95 2.1E-05 33.1 -0.7 82 37-130 29-111 (177)
77 PF13516 LRR_6: Leucine Rich r 62.9 4.6 9.9E-05 19.3 1.0 13 9-21 2-14 (24)
78 PF07725 LRR_3: Leucine Rich R 61.1 5.7 0.00012 18.6 1.1 18 10-27 1-18 (20)
79 smart00365 LRR_SD22 Leucine-ri 61.0 6.9 0.00015 19.6 1.5 15 9-23 2-16 (26)
80 smart00364 LRR_BAC Leucine-ric 55.1 7.5 0.00016 19.5 1.0 17 36-52 3-19 (26)
81 PF05725 FNIP: FNIP Repeat; I 50.5 36 0.00078 19.0 3.6 9 36-44 13-21 (44)
82 smart00368 LRR_RI Leucine rich 33.2 32 0.00069 17.1 1.4 12 10-21 3-14 (28)
83 COG5238 RNA1 Ran GTPase-activa 20.2 1.4E+02 0.0031 24.7 3.5 39 34-72 91-132 (388)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.49 E-value=1.9e-13 Score=130.22 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=63.1
Q ss_pred cccceEEcccccccccccCCCCccccCCccEEEEecCC-CCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 9 PNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDN-SACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 9 p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~-~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
.+|++|++.++.++.+|.+. ..+++|+.|++++|. ...+|. + ..+++|++|++++|..+ ..+|. .+
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~---~~l~~Lk~L~Ls~~~~l~~ip~--l-s~l~~Le~L~L~~c~~L-~~lp~------si 677 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGV---HSLTGLRNIDLRGSKNLKEIPD--L-SMATNLETLKLSDCSSL-VELPS------SI 677 (1153)
T ss_pred cCCcEEECcCcccccccccc---ccCCCCCEEECCCCCCcCcCCc--c-ccCCcccEEEecCCCCc-cccch------hh
Confidence 57777888777777766543 346777777777774 355553 2 36777777777777666 22331 23
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCce
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLL 133 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~ 133 (216)
+.+++|+.|++++|.+++.+... ..+++|+.|.+++|..++
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp~~-----i~l~sL~~L~Lsgc~~L~ 718 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILPTG-----INLKSLYRLNLSGCSRLK 718 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccCCc-----CCCCCCCEEeCCCCCCcc
Confidence 45666666666666666554321 134555555555554443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.49 E-value=1.7e-13 Score=130.42 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=36.5
Q ss_pred cccccceEEccc-ccccccccCCCCccccCCccEEEEecCC-CCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 7 IVPNLKELSLSG-KDVKLILQADFPQHFFGSLRELEIAEDN-SACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 7 ~~p~Le~L~l~~-~~l~~i~~~~~~~~~~~~L~~L~i~~c~-~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
.+++|+.|++++ .+++.+. . + ..+++|+.|++++|. ...+|.. + +.+++|++|.+++|..+
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip-~-l--s~l~~Le~L~L~~c~~L~~lp~s-i-~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIP-D-L--SMATNLETLKLSDCSSLVELPSS-I-QYLNKLEDLDMSRCENL 694 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCC-c-c--ccCCcccEEEecCCCCccccchh-h-hccCCCCEEeCCCCCCc
Confidence 367788888876 3444432 1 1 235677777777774 3556654 3 36666666666666555
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.21 E-value=5.1e-11 Score=112.13 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=72.8
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCC-CCcChHHHHhhCCCCcEEEEeecCCceeEeccC------
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNS-ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEE------ 80 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~-~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~------ 80 (216)
+.+|++|+++++++... .|...+++|++|++++|.. ..+|.. + +.+++|++|++++|... ...|..
T Consensus 117 l~~L~~L~Ls~n~l~~~----~p~~~l~~L~~L~Ls~n~~~~~~p~~-~-~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~ 189 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGS----IPRGSIPNLETLDLSNNMLSGEIPND-I-GSFSSLKVLDLGGNVLV-GKIPNSLTNLTS 189 (968)
T ss_pred CCCCCEEECcCCccccc----cCccccCCCCEEECcCCcccccCChH-H-hcCCCCCEEECccCccc-ccCChhhhhCcC
Confidence 46777777777655432 2223455666666666643 344543 3 35666666666655443 222210
Q ss_pred ------------ccccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccE
Q 041465 81 ------------GCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTK 148 (216)
Q Consensus 81 ------------~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~ 148 (216)
+..+..++.+++|+.|+++++.-...+ +.....+++|+.|++++|.-...+ |..+..+++|++
T Consensus 190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~ 264 (968)
T PLN00113 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI----PYEIGGLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQY 264 (968)
T ss_pred CCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC----ChhHhcCCCCCEEECcCceecccc-ChhHhCCCCCCE
Confidence 000011233444444444433211111 001123556666666655422222 322445566666
Q ss_pred EEEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 149 LVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 149 L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
|++++|. +....+ .....+++|++|++++|.
T Consensus 265 L~L~~n~-l~~~~p-~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 265 LFLYQNK-LSGPIP-PSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCe-eeccCc-hhHhhccCcCEEECcCCe
Confidence 6666553 222222 223455566666666553
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.20 E-value=6.8e-11 Score=111.30 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=94.3
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCC-CCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNS-ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKH 86 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~-~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~ 86 (216)
+++|++|+++++++..-.+... ...+++|++|++++|.. ..+|.. .+++|++|++++|... ..+| ..
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~-~~~l~~L~~L~Ls~n~l~~~~p~~----~l~~L~~L~Ls~n~~~-~~~p------~~ 159 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDI-FTTSSSLRYLNLSNNNFTGSIPRG----SIPNLETLDLSNNMLS-GEIP------ND 159 (968)
T ss_pred CCCCCEEECCCCccCCcCChHH-hccCCCCCEEECcCCccccccCcc----ccCCCCEEECcCCccc-ccCC------hH
Confidence 7899999999987753222111 02478999999999965 567754 7899999999998765 3333 12
Q ss_pred ccccccccEEecCccc-------------ccceecccCc-------ccCCcCCcccEEEEecCcCceeecCCCcccCCCc
Q 041465 87 VGKLAMIKTLELNRHY-------------HLKQLCKQDS-------KLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNL 146 (216)
Q Consensus 87 ~~~l~~L~~L~l~~~~-------------~L~~l~~~~~-------~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L 146 (216)
++.+++|+.|+++++. +|+.+...+. .....+++|+.|++++|.-...+ |..+..+++|
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L 238 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI-PYEIGGLTSL 238 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC-ChhHhcCCCC
Confidence 4567777777776542 1222211110 01123556666666655432223 3224556677
Q ss_pred cEEEEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 147 TKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 147 ~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
++|++++|. +....+ .....+++|++|.+++|.
T Consensus 239 ~~L~L~~n~-l~~~~p-~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 239 NHLDLVYNN-LTGPIP-SSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred CEEECcCce-eccccC-hhHhCCCCCCEEECcCCe
Confidence 777776664 332222 234566777777777664
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.66 E-value=2.3e-08 Score=86.74 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=99.5
Q ss_pred cccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccccc
Q 041465 9 PNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVG 88 (216)
Q Consensus 9 p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~ 88 (216)
+++++|++++|.+..+-.+.+ +.|.+|..|.++.+....+|.. .+.+|++|+.|++..+... .+ . |. .++
T Consensus 173 ~ni~~L~La~N~It~l~~~~F--~~lnsL~tlkLsrNrittLp~r-~Fk~L~~L~~LdLnrN~ir-iv-e--~l---tFq 242 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHF--DSLNSLLTLKLSRNRITTLPQR-SFKRLPKLESLDLNRNRIR-IV-E--GL---TFQ 242 (873)
T ss_pred CCceEEeeccccccccccccc--cccchheeeecccCcccccCHH-Hhhhcchhhhhhcccccee-ee-h--hh---hhc
Confidence 357777777766665443333 3467888888888888888877 6767999999999877554 22 1 11 234
Q ss_pred ccccccEEecC-------------cccccceecccCc-------ccCCcCCcccEEEEecCcCceeecCCCcccCCCccE
Q 041465 89 KLAMIKTLELN-------------RHYHLKQLCKQDS-------KLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTK 148 (216)
Q Consensus 89 ~l~~L~~L~l~-------------~~~~L~~l~~~~~-------~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~ 148 (216)
++++|+.|.+. +|.+++.+..+.. +..-.+++|+.|+++.+. +..+-+++....++|+.
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKE 321 (873)
T ss_pred CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-hheeecchhhhccccee
Confidence 56666655442 2333333322111 111357788888887754 44444442334678999
Q ss_pred EEEecCCCCcccCCchHHhhccCCcEEEEecC
Q 041465 149 LVAFGCKKLLHMVTSSTAKTLVQLVTVSICGC 180 (216)
Q Consensus 149 L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 180 (216)
|++++. +++.+.+ .....|.+|++|.++..
T Consensus 322 LdLs~N-~i~~l~~-~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 322 LDLSSN-RITRLDE-GSFRVLSQLEELNLSHN 351 (873)
T ss_pred Eecccc-ccccCCh-hHHHHHHHhhhhccccc
Confidence 999875 4887654 44567888999988765
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.61 E-value=3.8e-09 Score=91.42 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=19.0
Q ss_pred CCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 143 FRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 143 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
+++|+.|.+.+. +++.+.. ..+..+.+|++|++.+..
T Consensus 391 l~~LrkL~l~gN-qlk~I~k-rAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 391 LPSLRKLRLTGN-QLKSIPK-RAFSGLEALEHLDLGDNA 427 (873)
T ss_pred chhhhheeecCc-eeeecch-hhhccCcccceecCCCCc
Confidence 555666665553 3555432 233455566666655553
No 7
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=7.9e-09 Score=86.50 Aligned_cols=189 Identities=20% Similarity=0.218 Sum_probs=103.2
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCC-cChHHHHhhCCCCcEEEEeecCCceeEeccCcccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSAC-FPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKH 86 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~-~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~ 86 (216)
+..|++..+.+..+........ ...|++.+.|+++.+-... .|.-.++++||+|+.|.++.+... ++... ..
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~-~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~---~~~~s---~~ 192 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEY-SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS---NFISS---NT 192 (505)
T ss_pred HHhhhheeecCccccccchhhh-hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc---CCccc---cc
Confidence 4566666776655543221111 1348888888888884322 222226678899999998887655 22111 11
Q ss_pred ccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHH
Q 041465 87 VGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTA 166 (216)
Q Consensus 87 ~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~ 166 (216)
...+++||.|.+++|. +. |..-.+....+|+|+.|.+..+......... ...+..|+.|++++.+. .+.......
T Consensus 193 ~~~l~~lK~L~l~~CG-ls--~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~l-i~~~~~~~~ 267 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCG-LS--WKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNL-IDFDQGYKV 267 (505)
T ss_pred hhhhhhhheEEeccCC-CC--HHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcc-ccccccccc
Confidence 2257888888888872 32 1111122235777777777776432221111 23466777788777653 333222344
Q ss_pred hhccCCcEEEEecCccchhhccCCccccccceeecccccceecc
Q 041465 167 KTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILS 210 (216)
Q Consensus 167 ~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~ 210 (216)
..++.|+.|.++.|. +.++-..+. ++.+....||+|++|.+.
T Consensus 268 ~~l~~L~~Lnls~tg-i~si~~~d~-~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTG-IASIAEPDV-ESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred ccccchhhhhccccC-cchhcCCCc-cchhhhcccccceeeecc
Confidence 567777777777774 444421111 111223467777777654
No 8
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.58 E-value=1.2e-07 Score=86.52 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=32.3
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCC
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSF 72 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~ 72 (216)
.++|+.|++++++++.++. ..+++|+.|++++|....+|.. + .++|+.|++++|..
T Consensus 198 p~~L~~L~Ls~N~LtsLP~-----~l~~nL~~L~Ls~N~LtsLP~~-l---~~~L~~L~Ls~N~L 253 (754)
T PRK15370 198 PEQITTLILDNNELKSLPE-----NLQGNIKTLYANSNQLTSIPAT-L---PDTIQEMELSINRI 253 (754)
T ss_pred ccCCcEEEecCCCCCcCCh-----hhccCCCEEECCCCccccCChh-h---hccccEEECcCCcc
Confidence 3467777777777765432 2245667777666655555643 2 23555565555543
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.48 E-value=2.8e-07 Score=84.21 Aligned_cols=53 Identities=19% Similarity=0.090 Sum_probs=27.8
Q ss_pred CCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccC
Q 041465 144 RNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 144 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~l 212 (216)
++|++|++++|. ++.++ ... .++|+.|++++|. +..+. ....++|++|++.++
T Consensus 325 ~sL~~L~Ls~N~-Lt~LP-~~l---~~sL~~L~Ls~N~-L~~LP----------~~lp~~L~~LdLs~N 377 (754)
T PRK15370 325 PGLKTLEAGENA-LTSLP-ASL---PPELQVLDVSKNQ-ITVLP----------ETLPPTITTLDVSRN 377 (754)
T ss_pred ccceeccccCCc-cccCC-hhh---cCcccEEECCCCC-CCcCC----------hhhcCCcCEEECCCC
Confidence 456666666653 44432 111 2466666666663 33221 012357888888765
No 10
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=1.4e-07 Score=58.69 Aligned_cols=60 Identities=27% Similarity=0.362 Sum_probs=38.0
Q ss_pred cccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecC
Q 041465 9 PNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFS 71 (216)
Q Consensus 9 p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~ 71 (216)
|+|++|++++++++.+.++.+ ..+++|++|++++|....+|.. .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f--~~l~~L~~L~l~~N~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSF--SNLPNLETLDLSNNNLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTT--TTGTTESEEEETSSSESEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHH--cCCCCCCEeEccCCccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 567777777766666544443 2466777777776666566555 44567777777776654
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.42 E-value=5.5e-09 Score=77.78 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=37.8
Q ss_pred ccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccc
Q 041465 10 NLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGK 89 (216)
Q Consensus 10 ~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~ 89 (216)
+...|.++.+++..+.++. ..+.+|+.|+++++....+|.. + +.+++|+.|.++-+... +.|. .+|.
T Consensus 34 ~ITrLtLSHNKl~~vppni---a~l~nlevln~~nnqie~lp~~-i-ssl~klr~lnvgmnrl~--~lpr------gfgs 100 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNI---AELKNLEVLNLSNNQIEELPTS-I-SSLPKLRILNVGMNRLN--ILPR------GFGS 100 (264)
T ss_pred hhhhhhcccCceeecCCcH---HHhhhhhhhhcccchhhhcChh-h-hhchhhhheecchhhhh--cCcc------ccCC
Confidence 3444555555554433321 2255566666666655555554 3 25566666655543322 2231 1345
Q ss_pred cccccEEecCc
Q 041465 90 LAMIKTLELNR 100 (216)
Q Consensus 90 l~~L~~L~l~~ 100 (216)
||.|+.|++.+
T Consensus 101 ~p~levldlty 111 (264)
T KOG0617|consen 101 FPALEVLDLTY 111 (264)
T ss_pred Cchhhhhhccc
Confidence 56666555544
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.3e-07 Score=79.45 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=69.5
Q ss_pred cccccceEEcccccccccccCCCCccccCCccEEEEecCCC-CCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccc
Q 041465 7 IVPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNS-ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEK 85 (216)
Q Consensus 7 ~~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~-~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~ 85 (216)
.+|+|+.|+++.|.+...|.+... ..++.||.|.+++|+. +.--.| .+..+|+|+.|.+..+... -+.. .
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~-~~l~~lK~L~l~~CGls~k~V~~-~~~~fPsl~~L~L~~N~~~-~~~~------~ 240 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTT-LLLSHLKQLVLNSCGLSWKDVQW-ILLTFPSLEVLYLEANEII-LIKA------T 240 (505)
T ss_pred hcccchhcccccccccCCccccch-hhhhhhheEEeccCCCCHHHHHH-HHHhCCcHHHhhhhccccc-ceec------c
Confidence 356666666666555544443322 3466666666666654 111222 3346666666666655322 1111 0
Q ss_pred cccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceee-cCCC-----cccCCCccEEEEecCC
Q 041465 86 HVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLIL-LPSS-----SVSFRNLTKLVAFGCK 155 (216)
Q Consensus 86 ~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l-~~~~-----~~~l~~L~~L~i~~C~ 155 (216)
+...+..|+.|+|++-+ +.++.. ......++.|..|.+++|. +.++ .|+. ...|++|++|.+...+
T Consensus 241 ~~~i~~~L~~LdLs~N~-li~~~~--~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 241 STKILQTLQELDLSNNN-LIDFDQ--GYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhhhhHHhhccccCCc-cccccc--ccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc
Confidence 12246677777777653 333211 1122467777777777664 2222 1220 1357788888877654
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.39 E-value=1.5e-08 Score=75.52 Aligned_cols=135 Identities=21% Similarity=0.224 Sum_probs=72.4
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+.+||.|+++++.++++... ..++++|+.|++.-+....+|.+ + +.+|.||.|++.+++.-|..+|. .+
T Consensus 55 l~nlevln~~nnqie~lp~~---issl~klr~lnvgmnrl~~lprg-f-gs~p~levldltynnl~e~~lpg------nf 123 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEELPTS---ISSLPKLRILNVGMNRLNILPRG-F-GSFPALEVLDLTYNNLNENSLPG------NF 123 (264)
T ss_pred hhhhhhhhcccchhhhcChh---hhhchhhhheecchhhhhcCccc-c-CCCchhhhhhccccccccccCCc------ch
Confidence 44666666666666653321 13466777777766666666665 4 36677777777666655455441 12
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccC
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMV 161 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~ 161 (216)
-.+..|+.|++++- ..+.+.. -.+.+++|+.|.+.+.. |-+++.. +..++.|+.|+|.+. +|+.++
T Consensus 124 f~m~tlralyl~dn-dfe~lp~----dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 124 FYMTTLRALYLGDN-DFEILPP----DVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred hHHHHHHHHHhcCC-CcccCCh----hhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccc-eeeecC
Confidence 23455555555542 2333211 11345666666666654 3334322 555666666666654 355543
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.24 E-value=1.6e-07 Score=82.48 Aligned_cols=90 Identities=22% Similarity=0.255 Sum_probs=55.2
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCc-CceeecCCCcccCCCccEEEEecCCCCcccCCchHH
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQ-SLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTA 166 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~-~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~ 166 (216)
..+.+|++|.+++-| |..+... ..+.+++|+.|.+++-. -+..++++ +..+.||..++++ |++|..++ ...
T Consensus 170 RRL~~LqtL~Ls~NP-L~hfQLr---QLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS-~N~Lp~vP--ecl 241 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNP-LNHFQLR---QLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLS-ENNLPIVP--ECL 241 (1255)
T ss_pred HHHhhhhhhhcCCCh-hhHHHHh---cCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhcccc-ccCCCcch--HHH
Confidence 356677777777765 2221111 12456777788777633 34455444 6778888888887 45676652 344
Q ss_pred hhccCCcEEEEecCccchhh
Q 041465 167 KTLVQLVTVSICGCSAMTEV 186 (216)
Q Consensus 167 ~~l~~L~~L~i~~C~~l~~i 186 (216)
-.+++|+.|++++.. ++++
T Consensus 242 y~l~~LrrLNLS~N~-iteL 260 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNK-ITEL 260 (1255)
T ss_pred hhhhhhheeccCcCc-eeee
Confidence 567888888888764 4443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.23 E-value=4.7e-06 Score=76.31 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=28.0
Q ss_pred cccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecC
Q 041465 9 PNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFS 71 (216)
Q Consensus 9 p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~ 71 (216)
++|+.|.+.+++++.+.. ..++|++|++++|....+|.. .++|+.|++++|.
T Consensus 222 ~~L~~L~L~~N~Lt~LP~------lp~~Lk~LdLs~N~LtsLP~l-----p~sL~~L~Ls~N~ 273 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPVL-----PPGLLELSIFSNP 273 (788)
T ss_pred cCCCEEEccCCcCCCCCC------CCCCCcEEEecCCccCcccCc-----ccccceeeccCCc
Confidence 356666666655554321 135666666666655555531 2455666665554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.22 E-value=5.3e-06 Score=75.99 Aligned_cols=146 Identities=20% Similarity=0.203 Sum_probs=79.0
Q ss_pred ccccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccc
Q 041465 6 QIVPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEK 85 (216)
Q Consensus 6 ~~~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~ 85 (216)
...++|++|++++|+++.++. ..++|+.|++++|....+|.. .++|+.|++++|... .+ |.
T Consensus 239 ~lp~~Lk~LdLs~N~LtsLP~------lp~sL~~L~Ls~N~L~~Lp~l-----p~~L~~L~Ls~N~Lt-~L-P~------ 299 (788)
T PRK15387 239 ALPPELRTLEVSGNQLTSLPV------LPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLT-SL-PV------ 299 (788)
T ss_pred CCCCCCcEEEecCCccCcccC------cccccceeeccCCchhhhhhc-----hhhcCEEECcCCccc-cc-cc------
Confidence 346899999999998887532 236788888888866555532 245677777766544 32 20
Q ss_pred cccccccccEEecCcccccceecc----------cCcc--cC-CcCCcccEEEEecCcCceeecCCCcccCCCccEEEEe
Q 041465 86 HVGKLAMIKTLELNRHYHLKQLCK----------QDSK--LG-PIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAF 152 (216)
Q Consensus 86 ~~~~l~~L~~L~l~~~~~L~~l~~----------~~~~--~~-~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~ 152 (216)
.+++|+.|++++. +++.+.. .+.. .. ....+|+.|+++++ +++.+++. .++|+.|+++
T Consensus 300 ---~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N-~Ls~LP~l----p~~L~~L~Ls 370 (788)
T PRK15387 300 ---LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDN-QLASLPTL----PSELYKLWAY 370 (788)
T ss_pred ---cccccceeECCCC-ccccCCCCcccccccccccCccccccccccccceEecCCC-ccCCCCCC----Ccccceehhh
Confidence 2355666666553 3333211 0000 00 01235666666653 35544321 3456666665
Q ss_pred cCCCCcccCCchHHhhccCCcEEEEecCccchhh
Q 041465 153 GCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEV 186 (216)
Q Consensus 153 ~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i 186 (216)
++ .+..++. ...+|+.|+++++. +..+
T Consensus 371 ~N-~L~~LP~-----l~~~L~~LdLs~N~-Lt~L 397 (788)
T PRK15387 371 NN-RLTSLPA-----LPSGLKELIVSGNR-LTSL 397 (788)
T ss_pred cc-ccccCcc-----cccccceEEecCCc-ccCC
Confidence 53 3544321 12467788887764 4443
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.20 E-value=5.3e-07 Score=74.25 Aligned_cols=61 Identities=20% Similarity=0.124 Sum_probs=30.3
Q ss_pred CcccEEEEecCcCceeec----CCCcccCCCccEEEEecCCCCcccCCchHHhh----ccCCcEEEEecCc
Q 041465 119 QYLEILKVYHCQSLLILL----PSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKT----LVQLVTVSICGCS 181 (216)
Q Consensus 119 ~~L~~L~i~~c~~L~~l~----~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~----l~~L~~L~i~~C~ 181 (216)
++|+.|++++|. +.... ...+..+++|++|++++|+ +........+.. .+.|++|++.+|.
T Consensus 193 ~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 193 CNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred CCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 467777777664 22110 0012345677777777764 433111111222 2567777777774
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=2e-06 Score=53.42 Aligned_cols=59 Identities=19% Similarity=0.284 Sum_probs=40.5
Q ss_pred CCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcc
Q 041465 35 GSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRH 101 (216)
Q Consensus 35 ~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~ 101 (216)
|+|++|++++|....+|.. .++.+++|++|++++|... .+.+ ..+..+++|++|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~-~f~~l~~L~~L~l~~N~l~-~i~~------~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD-SFSNLPNLETLDLSNNNLT-SIPP------DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTT-TTTTGTTESEEEETSSSES-EEET------TTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHH-HHcCCCCCCEeEccCCccC-ccCH------HHHcCCCCCCEEeCcCC
Confidence 4678888888876777766 5567888888888876654 4433 13456777777777664
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.15 E-value=1.9e-06 Score=80.13 Aligned_cols=70 Identities=20% Similarity=0.365 Sum_probs=39.1
Q ss_pred cCCcccEEEEecCcCceeec----CCCccc-CCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhhccC
Q 041465 117 IFQYLEILKVYHCQSLLILL----PSSSVS-FRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVIN 189 (216)
Q Consensus 117 ~l~~L~~L~i~~c~~L~~l~----~~~~~~-l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~ 189 (216)
.+.+|+.|.|.+|...+... ...... |+++..+.+.+|..++.+. +..-.++|+.|.+.+|..++++.+.
T Consensus 715 ~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~---~~~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 715 SLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT---WLLFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred cccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc---hhhccCcccEEEEecccccccCCCH
Confidence 45666666666666543211 000111 4455555555555554432 2234578888888888888877654
No 20
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.10 E-value=1.2e-05 Score=68.27 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=30.9
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCC-CCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNS-ACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~-~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
++++.+|++++++++.+. .+| ++|+.|.+++|.. ..+|.. + .++|++|.+++|..+
T Consensus 51 ~~~l~~L~Is~c~L~sLP--~LP----~sLtsL~Lsnc~nLtsLP~~-L---P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP--VLP----NELTEITIENCNNLTTLPGS-I---PEGLEKLTVCHCPEI 107 (426)
T ss_pred hcCCCEEEeCCCCCcccC--CCC----CCCcEEEccCCCCcccCCch-h---hhhhhheEccCcccc
Confidence 356666666666555532 122 3566666666643 555543 2 246666666666544
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.00 E-value=3.2e-07 Score=80.55 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=58.0
Q ss_pred ccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcccCC
Q 041465 37 LRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGP 116 (216)
Q Consensus 37 L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~ 116 (216)
|-+|+++++....+|.. + .++.+|++|.+++++.. .|. ...+|++++|..-.|.+-+.-....+....
T Consensus 152 LLfLDLS~NrLe~LPPQ-~-RRL~~LqtL~Ls~NPL~--hfQ--------LrQLPsmtsL~vLhms~TqRTl~N~Ptsld 219 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQ-I-RRLSMLQTLKLSNNPLN--HFQ--------LRQLPSMTSLSVLHMSNTQRTLDNIPTSLD 219 (1255)
T ss_pred HhhhccccchhhhcCHH-H-HHHhhhhhhhcCCChhh--HHH--------HhcCccchhhhhhhcccccchhhcCCCchh
Confidence 44556666655556554 3 25666666666665543 111 223444444333222221110001111223
Q ss_pred cCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEec
Q 041465 117 IFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICG 179 (216)
Q Consensus 117 ~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 179 (216)
.+.+|..++++. ++|..++.. ...+++|+.|.+++. +++.+. .......+|++|+++.
T Consensus 220 ~l~NL~dvDlS~-N~Lp~vPec-ly~l~~LrrLNLS~N-~iteL~--~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 220 DLHNLRDVDLSE-NNLPIVPEC-LYKLRNLRRLNLSGN-KITELN--MTEGEWENLETLNLSR 277 (1255)
T ss_pred hhhhhhhccccc-cCCCcchHH-HhhhhhhheeccCcC-ceeeee--ccHHHHhhhhhhcccc
Confidence 455666666543 345544322 556667777777664 355442 1223344555555554
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.98 E-value=1.5e-06 Score=71.46 Aligned_cols=89 Identities=17% Similarity=-0.023 Sum_probs=40.7
Q ss_pred CCcccEEEEecCcCcee-----ecCCCcccCCCccEEEEecCCCCcccCC---chHHhhccCCcEEEEecCccchhhccC
Q 041465 118 FQYLEILKVYHCQSLLI-----LLPSSSVSFRNLTKLVAFGCKKLLHMVT---SSTAKTLVQLVTVSICGCSAMTEVVIN 189 (216)
Q Consensus 118 l~~L~~L~i~~c~~L~~-----l~~~~~~~l~~L~~L~i~~C~~L~~l~~---~~~~~~l~~L~~L~i~~C~~l~~i~~~ 189 (216)
+++|+.|++.+|. ++. +... ...+++|++|++++|. +..... ......+++|++|++++|. +......
T Consensus 164 ~~~L~~L~l~~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~ 239 (319)
T cd00116 164 NRDLKELNLANNG-IGDAGIRALAEG-LKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAA 239 (319)
T ss_pred CCCcCEEECcCCC-CchHHHHHHHHH-HHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHH
Confidence 3456666666654 221 1000 1234577777777664 322110 1122345667777777764 2221000
Q ss_pred CccccccceeecccccceecccC
Q 041465 190 GKEGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 190 ~~~~~~~~~~~~~~L~~L~l~~l 212 (216)
.-. .......+.|++|.+.++
T Consensus 240 ~l~--~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 240 ALA--SALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHH--HHHhccCCCceEEEccCC
Confidence 000 000002367888887776
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.97 E-value=6.7e-06 Score=76.53 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=37.5
Q ss_pred cCCccEEEEecCC-CCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCccccccee
Q 041465 34 FGSLRELEIAEDN-SACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQL 107 (216)
Q Consensus 34 ~~~L~~L~i~~c~-~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 107 (216)
++.|+.|++++|. ...+|.. + +.|-+|++|++++.... . +| ..++.+.+|.+|++.....+..+
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~-I-~~Li~LryL~L~~t~I~-~-LP------~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSS-I-GELVHLRYLDLSDTGIS-H-LP------SGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred CcceEEEECCCCCccCcCChH-H-hhhhhhhcccccCCCcc-c-cc------hHHHHHHhhheeccccccccccc
Confidence 6677777777774 4677765 4 36777777777766543 2 22 12345556666666555444443
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.94 E-value=1.7e-05 Score=59.96 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=35.2
Q ss_pred ccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccc
Q 041465 10 NLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGK 89 (216)
Q Consensus 10 ~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~ 89 (216)
.+++|++.++.+..|- + +. ..+.+|+.|++++|....++. + ..+++|+.|++++|... .+-+ + ....
T Consensus 20 ~~~~L~L~~n~I~~Ie-~-L~-~~l~~L~~L~Ls~N~I~~l~~--l-~~L~~L~~L~L~~N~I~-~i~~--~----l~~~ 86 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-N-LG-ATLDKLEVLDLSNNQITKLEG--L-PGLPRLKTLDLSNNRIS-SISE--G----LDKN 86 (175)
T ss_dssp -----------------S----TT-TT--EEE-TTS--S--TT-------TT--EEE--SS----S-CH--H----HHHH
T ss_pred cccccccccccccccc-c-hh-hhhcCCCEEECCCCCCccccC--c-cChhhhhhcccCCCCCC-cccc--c----hHHh
Confidence 5889999998887652 1 21 247899999999998766663 2 47899999999998766 3311 0 0125
Q ss_pred cccccEEecCcccccceecccCcccCCcCCcccEEEEecCc
Q 041465 90 LAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQ 130 (216)
Q Consensus 90 l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~ 130 (216)
+|+|++|++++- ++..+.. ......+++|+.|++.++|
T Consensus 87 lp~L~~L~L~~N-~I~~l~~--l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 87 LPNLQELYLSNN-KISDLNE--LEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -TT--EEE-TTS----SCCC--CGGGGG-TT--EEE-TT-G
T ss_pred CCcCCEEECcCC-cCCChHH--hHHHHcCCCcceeeccCCc
Confidence 899999998763 3433311 1112358999999999887
No 25
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=9e-07 Score=71.34 Aligned_cols=135 Identities=18% Similarity=0.128 Sum_probs=67.9
Q ss_pred CCccEEEEecCCC-CCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcc
Q 041465 35 GSLRELEIAEDNS-ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSK 113 (216)
Q Consensus 35 ~~L~~L~i~~c~~-~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 113 (216)
.+|+.|+++.|.+ ..+...-++++++.|..|.+++|....+.... .....-++|+.|.++|+.. .+......
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv-----~V~hise~l~~LNlsG~rr--nl~~sh~~ 306 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV-----AVAHISETLTQLNLSGYRR--NLQKSHLS 306 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH-----HHhhhchhhhhhhhhhhHh--hhhhhHHH
Confidence 3566666666633 33332214456667777777776544111100 0001234566666665532 11000000
Q ss_pred -cCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchH---HhhccCCcEEEEecC
Q 041465 114 -LGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSST---AKTLVQLVTVSICGC 180 (216)
Q Consensus 114 -~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~---~~~l~~L~~L~i~~C 180 (216)
....+++|..|++++|..++.-.-.++..|+.|++|.++.|-.+ ++.+ ..+.++|.+|++.+|
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i----~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI----IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC----ChHHeeeeccCcceEEEEeccc
Confidence 01246677777777777665311112345777777777777542 2222 245577777777776
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.77 E-value=6.7e-07 Score=81.23 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=20.3
Q ss_pred cccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCcc
Q 041465 140 SVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSA 182 (216)
Q Consensus 140 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 182 (216)
...++.|+.+|++ |++|..+..+.... -++|++|++++...
T Consensus 448 ~~~l~qL~~lDlS-~N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLS-CNNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhcCcceEEecc-cchhhhhhhhhhCC-CcccceeeccCCcc
Confidence 4455666666665 44555443211111 14666666666553
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.77 E-value=3.4e-06 Score=76.80 Aligned_cols=131 Identities=21% Similarity=0.298 Sum_probs=83.2
Q ss_pred ccccccceEEcccccccc-cccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccc
Q 041465 6 QIVPNLKELSLSGKDVKL-ILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLE 84 (216)
Q Consensus 6 ~~~p~Le~L~l~~~~l~~-i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~ 84 (216)
..++.|+.|.+.+|.+.+ .|+- ...|.+||.|+++++...+||.. .+.++..||+|.++++... .+ |+
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~---l~~~~hLKVLhLsyNrL~~fpas-~~~kle~LeeL~LSGNkL~-~L-p~----- 424 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPV---LVNFKHLKVLHLSYNRLNSFPAS-KLRKLEELEELNLSGNKLT-TL-PD----- 424 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhh---hccccceeeeeecccccccCCHH-HHhchHHhHHHhcccchhh-hh-hH-----
Confidence 446778888888876653 3321 24589999999999999999988 6779999999999998765 33 31
Q ss_pred ccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeec-CCCcccCCCccEEEEecCCC
Q 041465 85 KHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILL-PSSSVSFRNLTKLVAFGCKK 156 (216)
Q Consensus 85 ~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~-~~~~~~l~~L~~L~i~~C~~ 156 (216)
.+..++.|+.|..++- .+.+++ + ...++.|+.++++ |++|+... +. ....++|++|++++...
T Consensus 425 -tva~~~~L~tL~ahsN-~l~~fP-e----~~~l~qL~~lDlS-~N~L~~~~l~~-~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 425 -TVANLGRLHTLRAHSN-QLLSFP-E----LAQLPQLKVLDLS-CNNLSEVTLPE-ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -HHHhhhhhHHHhhcCC-ceeech-h----hhhcCcceEEecc-cchhhhhhhhh-hCCCcccceeeccCCcc
Confidence 2335666666655442 233322 1 1245666666665 34454332 21 22236778888777665
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.74 E-value=2.2e-05 Score=59.35 Aligned_cols=130 Identities=18% Similarity=0.135 Sum_probs=44.7
Q ss_pred cCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcc
Q 041465 34 FGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSK 113 (216)
Q Consensus 34 ~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 113 (216)
..++++|++.++....+.. +...+.+|+.|++++|... .+ + | +..+++|+.|.+++- .++++... .
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~-~l-~--~-----l~~L~~L~~L~L~~N-~I~~i~~~-l- 83 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQIT-KL-E--G-----LPGLPRLKTLDLSNN-RISSISEG-L- 83 (175)
T ss_dssp ------------------S----TT-TT--EEE-TTS--S----T--T---------TT--EEE--SS----S-CHH-H-
T ss_pred ccccccccccccccccccc--hhhhhcCCCEEECCCCCCc-cc-c--C-----ccChhhhhhcccCCC-CCCccccc-h-
Confidence 3468999999997766542 3336889999999998766 43 1 1 346899999999874 56555221 1
Q ss_pred cCCcCCcccEEEEecCcCceeecC-CCcccCCCccEEEEecCCCCcccCC--chHHhhccCCcEEEEecC
Q 041465 114 LGPIFQYLEILKVYHCQSLLILLP-SSSVSFRNLTKLVAFGCKKLLHMVT--SSTAKTLVQLVTVSICGC 180 (216)
Q Consensus 114 ~~~~l~~L~~L~i~~c~~L~~l~~-~~~~~l~~L~~L~i~~C~~L~~l~~--~~~~~~l~~L~~L~i~~C 180 (216)
...+++|+.|.+.++. +..+.. .....+++|++|++.+++ +..-.. ......+|+|+.|+-...
T Consensus 84 -~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 84 -DKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred -HHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 1247899999998753 333211 113468999999999876 222111 123456788888864433
No 29
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.56 E-value=2.4e-05 Score=71.18 Aligned_cols=135 Identities=14% Similarity=0.149 Sum_probs=76.1
Q ss_pred ccCCccEEEEecCCC--CCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceeccc
Q 041465 33 FFGSLRELEIAEDNS--ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQ 110 (216)
Q Consensus 33 ~~~~L~~L~i~~c~~--~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~ 110 (216)
+-.+|++|+|+|-.. ..-|.. +...||+|++|.|.+-.....-|. .....||+|.+|+|++. ++..+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~k-ig~~LPsL~sL~i~~~~~~~~dF~------~lc~sFpNL~sLDIS~T-nI~nl--- 188 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKK-IGTMLPSLRSLVISGRQFDNDDFS------QLCASFPNLRSLDISGT-NISNL--- 188 (699)
T ss_pred HHHhhhhcCccccchhhccHHHH-HhhhCcccceEEecCceecchhHH------HHhhccCccceeecCCC-CccCc---
Confidence 456888888888532 222332 455788899998877433211111 11236888999988886 45444
Q ss_pred CcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCccc-CC---chHHhhccCCcEEEEecC
Q 041465 111 DSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHM-VT---SSTAKTLVQLVTVSICGC 180 (216)
Q Consensus 111 ~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l-~~---~~~~~~l~~L~~L~i~~C 180 (216)
.+...+++|+.|.+.+.+--..-.-..++.+++|+.|||+.=.+...- .. ......||.|+.|+.++-
T Consensus 189 --~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 189 --SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred --HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 233467888888877754222110001456888888888864432221 00 011123667777766654
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.52 E-value=1.3e-06 Score=73.19 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=38.4
Q ss_pred cccccccceEEccc-ccccccccCCCCccccCCccEEEEecCCC-CCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 5 DQIVPNLKELSLSG-KDVKLILQADFPQHFFGSLRELEIAEDNS-ACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 5 ~~~~p~Le~L~l~~-~~l~~i~~~~~~~~~~~~L~~L~i~~c~~-~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
...+||+|+|.+.+ .++++.--..+ ...+++|++|++..|.. +.....+....+++|++|.+++|+..
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sl-a~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSL-ARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHH-HHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence 34578888887777 43332110001 12467777777777743 11111114457788888888888655
No 31
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.50 E-value=0.00021 Score=60.81 Aligned_cols=70 Identities=10% Similarity=0.080 Sum_probs=51.0
Q ss_pred cCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcc
Q 041465 34 FGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSK 113 (216)
Q Consensus 34 ~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 113 (216)
+.+++.|++++|....+|. --++|++|.+++|..+ ..+|. ...++|++|.+++|.++..+
T Consensus 51 ~~~l~~L~Is~c~L~sLP~-----LP~sLtsL~Lsnc~nL-tsLP~--------~LP~nLe~L~Ls~Cs~L~sL------ 110 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV-----LPNELTEITIENCNNL-TTLPG--------SIPEGLEKLTVCHCPEISGL------ 110 (426)
T ss_pred hcCCCEEEeCCCCCcccCC-----CCCCCcEEEccCCCCc-ccCCc--------hhhhhhhheEccCccccccc------
Confidence 6789999999997777772 2347999999998887 55552 12468999999999877654
Q ss_pred cCCcCCcccEEEEe
Q 041465 114 LGPIFQYLEILKVY 127 (216)
Q Consensus 114 ~~~~l~~L~~L~i~ 127 (216)
.++|+.|.+.
T Consensus 111 ----P~sLe~L~L~ 120 (426)
T PRK15386 111 ----PESVRSLEIK 120 (426)
T ss_pred ----ccccceEEeC
Confidence 2346666665
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=5.2e-05 Score=69.00 Aligned_cols=157 Identities=17% Similarity=0.133 Sum_probs=79.4
Q ss_pred cccceEEcccc-cccccccCCCCccccCCccEEEEecCCC--CCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccc
Q 041465 9 PNLKELSLSGK-DVKLILQADFPQHFFGSLRELEIAEDNS--ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEK 85 (216)
Q Consensus 9 p~Le~L~l~~~-~l~~i~~~~~~~~~~~~L~~L~i~~c~~--~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~ 85 (216)
.+|++|+|+|. ....=|+.... ..||.|+.|.+.+-.. ..|-. ...++|||..|+|++++.. .+..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig-~~LPsL~sL~i~~~~~~~~dF~~--lc~sFpNL~sLDIS~TnI~-nl~G------- 190 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIG-TMLPSLRSLVISGRQFDNDDFSQ--LCASFPNLRSLDISGTNIS-NLSG------- 190 (699)
T ss_pred HhhhhcCccccchhhccHHHHHh-hhCcccceEEecCceecchhHHH--HhhccCccceeecCCCCcc-CcHH-------
Confidence 46777777772 22222443322 3478888888877532 22222 4457788888888877554 3211
Q ss_pred cccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceee------cCCCcccCCCccEEEEecCCCCcc
Q 041465 86 HVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLIL------LPSSSVSFRNLTKLVAFGCKKLLH 159 (216)
Q Consensus 86 ~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l------~~~~~~~l~~L~~L~i~~C~~L~~ 159 (216)
++.+.+|+.|.+.+++=-..-. ......+++|+.|+|+.=.+...- ... ...+|+|+.||.++=. +..
T Consensus 191 -IS~LknLq~L~mrnLe~e~~~~---l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec-~~~LpeLrfLDcSgTd-i~~ 264 (699)
T KOG3665|consen 191 -ISRLKNLQVLSMRNLEFESYQD---LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC-GMVLPELRFLDCSGTD-INE 264 (699)
T ss_pred -HhccccHHHHhccCCCCCchhh---HHHHhcccCCCeeeccccccccchHHHHHHHHh-cccCccccEEecCCcc-hhH
Confidence 3356777776665553111000 000124777888888764433221 011 1237777777766422 211
Q ss_pred cCCchHHhhccCCcEEEEecCcc
Q 041465 160 MVTSSTAKTLVQLVTVSICGCSA 182 (216)
Q Consensus 160 l~~~~~~~~l~~L~~L~i~~C~~ 182 (216)
-+-.....+-++|+.+.+.+|..
T Consensus 265 ~~le~ll~sH~~L~~i~~~~~~~ 287 (699)
T KOG3665|consen 265 EILEELLNSHPNLQQIAALDCLA 287 (699)
T ss_pred HHHHHHHHhCccHhhhhhhhhhc
Confidence 11112233445666655555543
No 33
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.30 E-value=3.1e-06 Score=70.84 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=40.5
Q ss_pred cCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 117 IFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 117 ~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
.++++..|++++. +++++|.+ +.-+.+|++||+++.. +.+++. ..+++ +|+.|.+.+.|
T Consensus 250 ~L~~l~vLDLRdN-klke~Pde-~clLrsL~rLDlSNN~-is~Lp~--sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 250 HLNSLLVLDLRDN-KLKEVPDE-ICLLRSLERLDLSNND-ISSLPY--SLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccceeeecccc-ccccCchH-HHHhhhhhhhcccCCc-cccCCc--ccccc-eeeehhhcCCc
Confidence 5777888888875 47777444 6677888888888653 666532 34566 77777777765
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.28 E-value=1.6e-05 Score=69.27 Aligned_cols=80 Identities=18% Similarity=0.278 Sum_probs=48.6
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
|..|+.+.++.+.+..|.. +...+..|++|+++.+....+|.. +. .+| |+.|.+++++.. .+ |+ .+
T Consensus 97 f~~Le~liLy~n~~r~ip~---~i~~L~~lt~l~ls~NqlS~lp~~-lC-~lp-Lkvli~sNNkl~-~l-p~------~i 162 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRTIPE---AICNLEALTFLDLSSNQLSHLPDG-LC-DLP-LKVLIVSNNKLT-SL-PE------EI 162 (722)
T ss_pred HHHHHHHHHHhccceecch---hhhhhhHHHHhhhccchhhcCChh-hh-cCc-ceeEEEecCccc-cC-Cc------cc
Confidence 4566677776655554432 123467788888888888778876 54 455 888888887665 33 31 13
Q ss_pred cccccccEEecCcc
Q 041465 88 GKLAMIKTLELNRH 101 (216)
Q Consensus 88 ~~l~~L~~L~l~~~ 101 (216)
+..++|..|+.+.+
T Consensus 163 g~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKN 176 (722)
T ss_pred ccchhHHHhhhhhh
Confidence 34555555555443
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.17 E-value=0.00021 Score=59.91 Aligned_cols=83 Identities=23% Similarity=0.273 Sum_probs=66.3
Q ss_pred cccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccc
Q 041465 7 IVPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKH 86 (216)
Q Consensus 7 ~~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~ 86 (216)
.+|+|++|+++++.++.|-++++ .....++.|.+..+....+..+ ++..+..|+.|++++++.. .+.|. +
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aF--e~~a~l~eL~L~~N~l~~v~~~-~f~~ls~L~tL~L~~N~it-~~~~~------a 341 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAF--EGAAELQELYLTRNKLEFVSSG-MFQGLSGLKTLSLYDNQIT-TVAPG------A 341 (498)
T ss_pred hcccceEeccCCCccchhhhhhh--cchhhhhhhhcCcchHHHHHHH-hhhccccceeeeecCCeeE-EEecc------c
Confidence 47999999999999998877766 3478899999999988888888 8889999999999998876 55442 2
Q ss_pred ccccccccEEecC
Q 041465 87 VGKLAMIKTLELN 99 (216)
Q Consensus 87 ~~~l~~L~~L~l~ 99 (216)
+..+.+|.+|.+-
T Consensus 342 F~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 342 FQTLFSLSTLNLL 354 (498)
T ss_pred ccccceeeeeehc
Confidence 4456666666654
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=2.2e-05 Score=63.52 Aligned_cols=135 Identities=24% Similarity=0.249 Sum_probs=84.3
Q ss_pred cccceEEccc-ccccccccCCCCccccCCccEEEEecCCC--CCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccc
Q 041465 9 PNLKELSLSG-KDVKLILQADFPQHFFGSLRELEIAEDNS--ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEK 85 (216)
Q Consensus 9 p~Le~L~l~~-~~l~~i~~~~~~~~~~~~L~~L~i~~c~~--~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~ 85 (216)
.+|+.|+|+. +++.+-- -+.--.+++.|..|++++|.. .....- +.+-=++|..|.++||... +... ....
T Consensus 234 ~~L~~lnlsm~sG~t~n~-~~ll~~scs~L~~LNlsWc~l~~~~Vtv~-V~hise~l~~LNlsG~rrn---l~~s-h~~t 307 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENA-LQLLLSSCSRLDELNLSWCFLFTEKVTVA-VAHISETLTQLNLSGYRRN---LQKS-HLST 307 (419)
T ss_pred ccceeeccccccccchhH-HHHHHHhhhhHhhcCchHhhccchhhhHH-HhhhchhhhhhhhhhhHhh---hhhh-HHHH
Confidence 3566666666 3333210 001113578899999999964 112211 3334478999999998643 1100 0011
Q ss_pred cccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCC---cccCCCccEEEEecCC
Q 041465 86 HVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSS---SVSFRNLTKLVAFGCK 155 (216)
Q Consensus 86 ~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~---~~~l~~L~~L~i~~C~ 155 (216)
-...+|+|.+|+++++-.++.=+ +.....|+.|++|+++.|..+. |.. ....|+|.+|++.+|-
T Consensus 308 L~~rcp~l~~LDLSD~v~l~~~~---~~~~~kf~~L~~lSlsRCY~i~---p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 308 LVRRCPNLVHLDLSDSVMLKNDC---FQEFFKFNYLQHLSLSRCYDII---PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHhCCceeeeccccccccCchH---HHHHHhcchheeeehhhhcCCC---hHHeeeeccCcceEEEEecccc
Confidence 12368999999999998877511 1122368999999999998663 331 2357899999999985
No 37
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.90 E-value=0.00024 Score=59.77 Aligned_cols=117 Identities=23% Similarity=0.226 Sum_probs=58.7
Q ss_pred CCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEe
Q 041465 48 ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVY 127 (216)
Q Consensus 48 ~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~ 127 (216)
..|+.. .+.++++|..|+++++..- . +|. .++.+..|+.|+|+.- ..+.++.- ...++.++.+..+
T Consensus 424 isfv~~-~l~~l~kLt~L~L~NN~Ln-~-LP~------e~~~lv~Lq~LnlS~N-rFr~lP~~----~y~lq~lEtllas 489 (565)
T KOG0472|consen 424 ISFVPL-ELSQLQKLTFLDLSNNLLN-D-LPE------EMGSLVRLQTLNLSFN-RFRMLPEC----LYELQTLETLLAS 489 (565)
T ss_pred cccchH-HHHhhhcceeeecccchhh-h-cch------hhhhhhhhheeccccc-ccccchHH----HhhHHHHHHHHhc
Confidence 344444 4456666777766665433 2 231 1334555666666543 22222110 0012223333333
Q ss_pred cCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCcc
Q 041465 128 HCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSA 182 (216)
Q Consensus 128 ~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 182 (216)
+ ..+..++++.+..+.+|.+|++.... ++.++ ...+++++|++|.+++.+.
T Consensus 490 ~-nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IP--p~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 490 N-NQIGSVDPSGLKNMRNLTTLDLQNND-LQQIP--PILGNMTNLRHLELDGNPF 540 (565)
T ss_pred c-ccccccChHHhhhhhhcceeccCCCc-hhhCC--hhhccccceeEEEecCCcc
Confidence 2 23555555545566777777776543 55543 3456777777777777763
No 38
>PLN03150 hypothetical protein; Provisional
Probab=96.88 E-value=0.0022 Score=58.16 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=15.6
Q ss_pred ccEEEEecCCC-CCcChHHHHhhCCCCcEEEEeecCC
Q 041465 37 LRELEIAEDNS-ACFPIWNVLERFHNLEKLILVCFSF 72 (216)
Q Consensus 37 L~~L~i~~c~~-~~~p~~~~~~~l~~L~~L~i~~c~~ 72 (216)
++.|+++++.. ..+|.. + ..+++|+.|++++|..
T Consensus 420 v~~L~L~~n~L~g~ip~~-i-~~L~~L~~L~Ls~N~l 454 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-I-SKLRHLQSINLSGNSI 454 (623)
T ss_pred EEEEECCCCCccccCCHH-H-hCCCCCCEEECCCCcc
Confidence 44455555433 344433 2 2455555555555443
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.88 E-value=0.0013 Score=37.87 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=18.9
Q ss_pred CccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 36 SLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 36 ~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
+|++|++++|....+|.. ++++++|+.|++++|...
T Consensus 2 ~L~~L~l~~N~i~~l~~~--l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPE--LSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGH--GTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCch--HhCCCCCCEEEecCCCCC
Confidence 456666666655555542 235666666666665433
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.85 E-value=0.00081 Score=57.29 Aligned_cols=80 Identities=20% Similarity=0.346 Sum_probs=50.1
Q ss_pred ccccceEEcccccccccccCCCCccccC-CccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFG-SLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKH 86 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~-~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~ 86 (216)
++++..|.+.++.+.++.+.. ..+. +|+.|+++++....+|.. + ..+++|+.|.+++|+.. .+.+.
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~---~~~~~nL~~L~l~~N~i~~l~~~-~-~~l~~L~~L~l~~N~l~-~l~~~------- 181 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLI---GLLKSNLKELDLSDNKIESLPSP-L-RNLPNLKNLDLSFNDLS-DLPKL------- 181 (394)
T ss_pred ccceeEEecCCcccccCcccc---ccchhhcccccccccchhhhhhh-h-hccccccccccCCchhh-hhhhh-------
Confidence 356777888777776653221 2243 788888888877777533 3 37888888888887766 44331
Q ss_pred ccccccccEEecCc
Q 041465 87 VGKLAMIKTLELNR 100 (216)
Q Consensus 87 ~~~l~~L~~L~l~~ 100 (216)
.+..++|+.|++++
T Consensus 182 ~~~~~~L~~L~ls~ 195 (394)
T COG4886 182 LSNLSNLNNLDLSG 195 (394)
T ss_pred hhhhhhhhheeccC
Confidence 11455666666554
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.0011 Score=53.88 Aligned_cols=68 Identities=16% Similarity=0.110 Sum_probs=31.2
Q ss_pred cCCcccEEEEecCcCceeecCC-CcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhh
Q 041465 117 IFQYLEILKVYHCQSLLILLPS-SSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEV 186 (216)
Q Consensus 117 ~l~~L~~L~i~~c~~L~~l~~~-~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i 186 (216)
.||++..+.+-+|| +++.... +...+|.+.-|.+... ++.++........+++|..|++.+.|-.+.+
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hcccchheeeecCc-ccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 46677777777665 3222111 1223444443333322 2222211112345566777777766654433
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.80 E-value=0.0016 Score=37.54 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=30.4
Q ss_pred cccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcC
Q 041465 9 PNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFP 51 (216)
Q Consensus 9 p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p 51 (216)
++|++|++++++++.+.+ .+ ..+++|+.|++++|....++
T Consensus 1 ~~L~~L~l~~N~i~~l~~-~l--~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-EL--SNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-HG--TTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCc-hH--hCCCCCCEEEecCCCCCCCc
Confidence 589999999999988543 12 46899999999999776655
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.56 E-value=0.0015 Score=55.74 Aligned_cols=59 Identities=25% Similarity=0.376 Sum_probs=46.6
Q ss_pred ccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 10 NLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 10 ~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
+|+.|+++++.++.+. .+...+++|+.|++++|....+|.. . ...++|+.|.++++...
T Consensus 141 nL~~L~l~~N~i~~l~---~~~~~l~~L~~L~l~~N~l~~l~~~-~-~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 141 NLKELDLSDNKIESLP---SPLRNLPNLKNLDLSFNDLSDLPKL-L-SNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hcccccccccchhhhh---hhhhccccccccccCCchhhhhhhh-h-hhhhhhhheeccCCccc
Confidence 8999999998888752 1224578999999999988888864 2 27899999999988765
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.54 E-value=0.00026 Score=57.62 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=65.8
Q ss_pred CccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcccC
Q 041465 36 SLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLG 115 (216)
Q Consensus 36 ~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~ 115 (216)
.|+.++++++....+-.+ + .-+|.++.|+++.+... .+- ..+.+++|..|++++. .|..+.. ..
T Consensus 285 ~LtelDLS~N~I~~iDES-v-KL~Pkir~L~lS~N~i~-~v~--------nLa~L~~L~~LDLS~N-~Ls~~~G----wh 348 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDES-V-KLAPKLRRLILSQNRIR-TVQ--------NLAELPQLQLLDLSGN-LLAECVG----WH 348 (490)
T ss_pred hhhhccccccchhhhhhh-h-hhccceeEEecccccee-eeh--------hhhhcccceEeecccc-hhHhhhh----hH
Confidence 466666666655555444 3 24566677777666555 321 1345677777777663 2332210 01
Q ss_pred CcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 116 PIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 116 ~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
..+-+.+.|.+..+. ++++ .+ ...+.+|.+|++.+.. ++.+-.....++++.|+++.+.+.|
T Consensus 349 ~KLGNIKtL~La~N~-iE~L-SG-L~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNK-IETL-SG-LRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhcCEeeeehhhhh-Hhhh-hh-hHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 134556666665532 3332 11 3456666777776643 4444322334566777777666665
No 45
>PLN03150 hypothetical protein; Provisional
Probab=96.46 E-value=0.0067 Score=55.06 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=29.1
Q ss_pred cCCccEEEEecCCC-CCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcc
Q 041465 34 FGSLRELEIAEDNS-ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRH 101 (216)
Q Consensus 34 ~~~L~~L~i~~c~~-~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~ 101 (216)
+++|+.|++++|.. ..+|.. + +.+++|+.|++++|... ...| ..++.+++|+.|++++.
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~-~-~~l~~L~~LdLs~N~ls-g~iP------~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPS-L-GSITSLEVLDLSYNSFN-GSIP------ESLGQLTSLRILNLNGN 500 (623)
T ss_pred CCCCCEEECCCCcccCcCChH-H-hCCCCCCEEECCCCCCC-CCCc------hHHhcCCCCCEEECcCC
Confidence 45555666655543 345543 2 35555666655555443 2222 12344555555555554
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.30 E-value=0.0024 Score=54.08 Aligned_cols=13 Identities=38% Similarity=0.225 Sum_probs=9.7
Q ss_pred ccccccceEEccc
Q 041465 6 QIVPNLKELSLSG 18 (216)
Q Consensus 6 ~~~p~Le~L~l~~ 18 (216)
.++|+|++|+++|
T Consensus 213 ~gC~kL~~lNlSw 225 (483)
T KOG4341|consen 213 EGCRKLKYLNLSW 225 (483)
T ss_pred HhhhhHHHhhhcc
Confidence 4577788888877
No 47
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.09 E-value=0.00091 Score=58.00 Aligned_cols=142 Identities=16% Similarity=0.064 Sum_probs=71.5
Q ss_pred cCCccEEEEecCCC-CCcChHHHHhhCCCCcEEEEeec-CCceeEeccCccccccccccccccEEecCcccccceecccC
Q 041465 34 FGSLRELEIAEDNS-ACFPIWNVLERFHNLEKLILVCF-SFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQD 111 (216)
Q Consensus 34 ~~~L~~L~i~~c~~-~~~p~~~~~~~l~~L~~L~i~~c-~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~ 111 (216)
+++|+.|.+.+|.. .......+....++|+.|++++| ... ...+. .. ......+++|+.+++..+..+.......
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~-~~-~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLI-TLSPL-LL-LLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccc-ccchh-Hh-hhhhhhcCCcCccchhhhhccCchhHHH
Confidence 56777777777743 21111003447777888887763 222 11110 00 0012245777777777766544332211
Q ss_pred cccCCcCCcccEEEEecCcCceeecC-CCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecC
Q 041465 112 SKLGPIFQYLEILKVYHCQSLLILLP-SSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGC 180 (216)
Q Consensus 112 ~~~~~~l~~L~~L~i~~c~~L~~l~~-~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 180 (216)
.. ..+++|+.|.+.+|..++...- .....+++|++|++++|..++.......+.++++++.|.+..+
T Consensus 264 l~--~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 264 LA--SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HH--hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 11 1366788887777776442110 0123467788888888877643211222344555555544333
No 48
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.02 E-value=0.0014 Score=56.88 Aligned_cols=144 Identities=19% Similarity=0.156 Sum_probs=85.4
Q ss_pred cCCccEEEEecCCCCCcC---hHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcc-cccceecc
Q 041465 34 FGSLRELEIAEDNSACFP---IWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRH-YHLKQLCK 109 (216)
Q Consensus 34 ~~~L~~L~i~~c~~~~~p---~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~L~~l~~ 109 (216)
...++.+....+...... .. +....++|+.+.+.+|...... +. .......++|+.|+++++ ........
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~L~~l~l~~~~~~~~~----~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~ 233 (482)
T KOG1947|consen 160 LANLESLSLSCCGSLLLDKILLR-LLSSCPLLKRLSLSGCSKITDD----SL-DALALKCPNLEELDLSGCCLLITLSPL 233 (482)
T ss_pred HHHHheeeeecccccccHHHHHH-HHhhCchhhHhhhcccccCChh----hH-HHHHhhCchhheecccCcccccccchh
Confidence 345555666555332111 11 3345788888888887655110 00 012336889999999874 22111110
Q ss_pred cCcccCCcCCcccEEEEecCcCceeecCCC-cccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccc
Q 041465 110 QDSKLGPIFQYLEILKVYHCQSLLILLPSS-SVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAM 183 (216)
Q Consensus 110 ~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~-~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 183 (216)
........+++|+.|++..|..++...-.. ....++|++|.+.+|..++...-...+..+++|++|++++|..+
T Consensus 234 ~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 234 LLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 001122346889999999988654321110 12378999999999998655432345567889999999999887
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.85 E-value=0.0018 Score=52.90 Aligned_cols=126 Identities=25% Similarity=0.181 Sum_probs=75.8
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
...|+++++++|.++.|-.+. ...|+++.|+++.+....+.. +..+++|+.|+++++... ++ .|. .
T Consensus 283 Wq~LtelDLS~N~I~~iDESv---KL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls-~~---~Gw----h 348 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESV---KLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLA-EC---VGW----H 348 (490)
T ss_pred Hhhhhhccccccchhhhhhhh---hhccceeEEeccccceeeehh---hhhcccceEeecccchhH-hh---hhh----H
Confidence 457899999998888754321 347899999999997755553 348999999999988655 22 111 1
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCc--CceeecCCCcccCCCccEEEEecCC
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQ--SLLILLPSSSVSFRNLTKLVAFGCK 155 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~--~L~~l~~~~~~~l~~L~~L~i~~C~ 155 (216)
..+.+.|.|.+.+. .++++ .+...+=+|..|+++++. ++..+ .+ ++++|.|+++.+.+.+
T Consensus 349 ~KLGNIKtL~La~N-~iE~L-----SGL~KLYSLvnLDl~~N~Ie~ldeV-~~-IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQN-KIETL-----SGLRKLYSLVNLDLSSNQIEELDEV-NH-IGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhcCEeeeehhhh-hHhhh-----hhhHhhhhheeccccccchhhHHHh-cc-cccccHHHHHhhcCCC
Confidence 14666677766542 12222 111233445566665542 22222 12 5567777777666654
No 50
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.0008 Score=51.56 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=30.3
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEec
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFG 153 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~ 153 (216)
..+++++.|.+.+|..+...+.+.... ..++|+.|+|++|+.+++---..+..|++|+.|.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 345666666666666555543332221 3455555555555554432111122344555554444
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.0012 Score=53.72 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=26.4
Q ss_pred ccCCccEEEEecCCC--CCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 33 FFGSLRELEIAEDNS--ACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 33 ~~~~L~~L~i~~c~~--~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
..+..+.+++.++.. ++--.. ++.++|.|+.|.+++++.-
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCC
Confidence 356788888888843 211122 5678888888888877654
No 52
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.37 E-value=0.00075 Score=56.71 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=41.3
Q ss_pred CCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecc
Q 041465 35 GSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCK 109 (216)
Q Consensus 35 ~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~ 109 (216)
+.-..+++..+....+|.+ .++.+++|++|+++.|... .|-| ..+.++++|..|.+.+-.+++++..
T Consensus 67 ~~tveirLdqN~I~~iP~~-aF~~l~~LRrLdLS~N~Is-~I~p------~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPG-AFKTLHRLRRLDLSKNNIS-FIAP------DAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcceEEEeccCCcccCChh-hccchhhhceecccccchh-hcCh------HhhhhhHhhhHHHhhcCCchhhhhh
Confidence 4566777777777777777 6667777777777776655 4433 1244555666555555455555543
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.00084 Score=54.10 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=22.3
Q ss_pred cCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCC
Q 041465 34 FGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSF 72 (216)
Q Consensus 34 ~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~ 72 (216)
+.+.+.|+..||+...+. +..+++.||.|.++-|..
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkI 53 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKI 53 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeecccc
Confidence 456666777777665555 334677777777765543
No 54
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.0044 Score=47.59 Aligned_cols=67 Identities=12% Similarity=0.095 Sum_probs=43.7
Q ss_pred cCCcccEEEEecCcCceeecCC-CcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccch
Q 041465 117 IFQYLEILKVYHCQSLLILLPS-SSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMT 184 (216)
Q Consensus 117 ~l~~L~~L~i~~c~~L~~l~~~-~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~ 184 (216)
.++.++.|.+.+|..+...--+ ...-.++|+.|+|++|+++++- ...+...+++|+.|.|.+-+.+.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhh
Confidence 4677888888888876543111 0124688888888888887653 22344566777888777766443
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.24 E-value=0.094 Score=40.54 Aligned_cols=106 Identities=15% Similarity=0.085 Sum_probs=44.9
Q ss_pred CccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcccC
Q 041465 36 SLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLG 115 (216)
Q Consensus 36 ~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~ 115 (216)
+...++++++....++ .+.+++.|.+|.+.+|... .+-|.- ...+|+|+.|.+.+- +++.+..-. ..
T Consensus 43 ~~d~iDLtdNdl~~l~---~lp~l~rL~tLll~nNrIt-~I~p~L------~~~~p~l~~L~LtnN-si~~l~dl~--pL 109 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD---NLPHLPRLHTLLLNNNRIT-RIDPDL------DTFLPNLKTLILTNN-SIQELGDLD--PL 109 (233)
T ss_pred ccceecccccchhhcc---cCCCccccceEEecCCcce-eeccch------hhhccccceEEecCc-chhhhhhcc--hh
Confidence 3445555555432222 1125555666666555544 332210 113455666555542 222221110 11
Q ss_pred CcCCcccEEEEecCcCceee--cCCCcccCCCccEEEEecC
Q 041465 116 PIFQYLEILKVYHCQSLLIL--LPSSSVSFRNLTKLVAFGC 154 (216)
Q Consensus 116 ~~l~~L~~L~i~~c~~L~~l--~~~~~~~l~~L~~L~i~~C 154 (216)
..+|.|++|.+-+.+--..- ---.+..+|+|+.||..+-
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 23455565555554311100 0000234677777776643
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.11 E-value=0.076 Score=41.03 Aligned_cols=107 Identities=15% Similarity=0.123 Sum_probs=66.4
Q ss_pred ccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccc
Q 041465 10 NLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGK 89 (216)
Q Consensus 10 ~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~ 89 (216)
+...+++.++++..+. .+| .+++|.+|.+.++....+... +...+|+|+.|.+.+++.. ++-... ....
T Consensus 43 ~~d~iDLtdNdl~~l~--~lp--~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~-~l~dl~-----pLa~ 111 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD--NLP--HLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQ-ELGDLD-----PLAS 111 (233)
T ss_pred ccceecccccchhhcc--cCC--CccccceEEecCCcceeeccc-hhhhccccceEEecCcchh-hhhhcc-----hhcc
Confidence 5566677776655421 233 478899999999987666655 6678899999999988766 432211 1346
Q ss_pred cccccEEecCcccccceecccCcccCCcCCcccEEEEec
Q 041465 90 LAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYH 128 (216)
Q Consensus 90 l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~ 128 (216)
+|+|++|.+.+-|--.. ..-.......+|+|+.|+...
T Consensus 112 ~p~L~~Ltll~Npv~~k-~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHK-KNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCccceeeecCCchhcc-cCceeEEEEecCcceEeehhh
Confidence 88999988876542111 000011223567777776654
No 57
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.68 E-value=0.05 Score=24.43 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=4.8
Q ss_pred CccEEEEecCCCC
Q 041465 36 SLRELEIAEDNSA 48 (216)
Q Consensus 36 ~L~~L~i~~c~~~ 48 (216)
+|+.|++++|...
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444555544433
No 58
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=93.66 E-value=0.011 Score=52.05 Aligned_cols=150 Identities=18% Similarity=0.174 Sum_probs=86.4
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+..|.+|+|+.+.+..+..+. .+--|+.|.++++....+|.. +- .++.|..|+.+.|... .+.+ ..
T Consensus 120 L~~lt~l~ls~NqlS~lp~~l----C~lpLkvli~sNNkl~~lp~~-ig-~~~tl~~ld~s~nei~-slps-------ql 185 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLSHLPDGL----CDLPLKVLIVSNNKLTSLPEE-IG-LLPTLAHLDVSKNEIQ-SLPS-------QL 185 (722)
T ss_pred hhHHHHhhhccchhhcCChhh----hcCcceeEEEecCccccCCcc-cc-cchhHHHhhhhhhhhh-hchH-------Hh
Confidence 445666677666665432111 123488899999988888876 54 7888888888887655 3322 24
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHH-
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTA- 166 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~- 166 (216)
+.+.+|+.|.+..- ++.++..+-. .+ .|..|++ +|+++..++.+ +..+..|++|.+.+.+ |++-+..-..
T Consensus 186 ~~l~slr~l~vrRn-~l~~lp~El~----~L-pLi~lDf-ScNkis~iPv~-fr~m~~Lq~l~LenNP-LqSPPAqIC~k 256 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRN-HLEDLPEELC----SL-PLIRLDF-SCNKISYLPVD-FRKMRHLQVLQLENNP-LQSPPAQICEK 256 (722)
T ss_pred hhHHHHHHHHHhhh-hhhhCCHHHh----CC-ceeeeec-ccCceeecchh-hhhhhhheeeeeccCC-CCCChHHHHhc
Confidence 56777777766543 3333322210 01 2444444 36777777555 6677778888777655 6552111111
Q ss_pred hhccCCcEEEEecC
Q 041465 167 KTLVQLVTVSICGC 180 (216)
Q Consensus 167 ~~l~~L~~L~i~~C 180 (216)
+-..-.++|++.-|
T Consensus 257 GkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 257 GKVHIFKYLSTQAC 270 (722)
T ss_pred cceeeeeeecchhc
Confidence 12233567777766
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.61 E-value=0.0091 Score=48.29 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=28.8
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
+|.||.|.|+-|+++.+- |...+.+|+.|.+..|....+-.-..+.++|+|+.|++..|+-.
T Consensus 40 Mp~lEVLsLSvNkIssL~----pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLA----PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred cccceeEEeeccccccch----hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 445555555544444321 11235555555555553322221113446666666666554433
No 60
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.44 E-value=0.078 Score=45.68 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=40.7
Q ss_pred cccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 7 IVPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 7 ~~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
.+.+|+.|++.++.++.+... ...+++|++|+++++....+.. +..++.|+.|++.+|...
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~---l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENL---LSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSGNLIS 153 (414)
T ss_pred cccceeeeeccccchhhcccc---hhhhhcchheeccccccccccc---hhhccchhhheeccCcch
Confidence 367788888887777764321 2457788888888886655542 136677888888777654
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.09 E-value=0.11 Score=43.30 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=16.5
Q ss_pred CCccEEEEecCC-CCCcC--hHHHHhhCCCCcEEEEeecC
Q 041465 35 GSLRELEIAEDN-SACFP--IWNVLERFHNLEKLILVCFS 71 (216)
Q Consensus 35 ~~L~~L~i~~c~-~~~~p--~~~~~~~l~~L~~L~i~~c~ 71 (216)
++|++|++++|- ....+ ...++.+...|++|.+.+|.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 455566666551 11111 11133345555555555554
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.50 E-value=1.5 Score=30.62 Aligned_cols=11 Identities=9% Similarity=0.172 Sum_probs=4.2
Q ss_pred hCCCCcEEEEe
Q 041465 58 RFHNLEKLILV 68 (216)
Q Consensus 58 ~l~~L~~L~i~ 68 (216)
..++|+.+.+.
T Consensus 33 ~~~~l~~i~~~ 43 (129)
T PF13306_consen 33 NCTSLKSINFP 43 (129)
T ss_dssp T-TT-SEEEES
T ss_pred ccccccccccc
Confidence 44445555443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.48 E-value=0.11 Score=41.44 Aligned_cols=111 Identities=20% Similarity=0.266 Sum_probs=63.5
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecC--CC-CCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAED--NS-ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLE 84 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c--~~-~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~ 84 (216)
+.+|+.|.+.+..+..+- .+| .+++||+|.++.+ .. ..++. .+..+|+|+++.+++|... . +.. .
T Consensus 42 ~~~le~ls~~n~gltt~~--~~P--~Lp~LkkL~lsdn~~~~~~~l~v--l~e~~P~l~~l~ls~Nki~-~-lst--l-- 109 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT--NFP--KLPKLKKLELSDNYRRVSGGLEV--LAEKAPNLKVLNLSGNKIK-D-LST--L-- 109 (260)
T ss_pred ccchhhhhhhccceeecc--cCC--CcchhhhhcccCCccccccccee--hhhhCCceeEEeecCCccc-c-ccc--c--
Confidence 456666766664444321 233 4789999999998 32 33433 2346799999999988655 1 110 0
Q ss_pred ccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcC
Q 041465 85 KHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQS 131 (216)
Q Consensus 85 ~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~ 131 (216)
.....+.+|+.|.+.+|+-.+ +-.........+++|++|+-.++..
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred chhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 013357788888888886544 1100000112456677666665543
No 64
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=91.16 E-value=0.0049 Score=55.85 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=64.7
Q ss_pred hhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeec
Q 041465 57 ERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILL 136 (216)
Q Consensus 57 ~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~ 136 (216)
+-++.|+.|+++.|... .+ ..+..+++|++|+|++. .|+.+..-+. ..+ .|+.|.++++. ++++
T Consensus 184 qll~ale~LnLshNk~~-~v--------~~Lr~l~~LkhLDlsyN-~L~~vp~l~~---~gc-~L~~L~lrnN~-l~tL- 247 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFT-KV--------DNLRRLPKLKHLDLSYN-CLRHVPQLSM---VGC-KLQLLNLRNNA-LTTL- 247 (1096)
T ss_pred HHHHHhhhhccchhhhh-hh--------HHHHhcccccccccccc-hhccccccch---hhh-hheeeeecccH-HHhh-
Confidence 46788999999888766 32 12456899999999763 4555432111 122 38888888753 5554
Q ss_pred CCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 137 PSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 137 ~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
-+ +.++.+|+.||+++.- |.....-.....|..|+.|.+.+.|
T Consensus 248 ~g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 248 RG-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hh-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 22 5678888888887642 2221111223345666777776654
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.04 E-value=0.63 Score=32.53 Aligned_cols=105 Identities=12% Similarity=0.123 Sum_probs=49.3
Q ss_pred HHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCcee
Q 041465 55 VLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLI 134 (216)
Q Consensus 55 ~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~ 134 (216)
.+....+|+.+.+.. .++.+-. ..+..+++|+.+.+.+ +++.+....+. ..++++.+.+.+ .+..
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~------~~F~~~~~l~~i~~~~--~~~~i~~~~F~---~~~~l~~i~~~~--~~~~ 71 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGE------NAFSNCTSLKSINFPN--NLTSIGDNAFS---NCKSLESITFPN--NLKS 71 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-T------TTTTT-TT-SEEEESS--TTSCE-TTTTT---T-TT-EEEEETS--TT-E
T ss_pred HHhCCCCCCEEEECC--CeeEeCh------hhcccccccccccccc--cccccceeeee---cccccccccccc--cccc
Confidence 334667788887753 2313322 2344677888888876 47776544332 355788888865 4555
Q ss_pred ecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEe
Q 041465 135 LLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSIC 178 (216)
Q Consensus 135 l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~ 178 (216)
+........++|+.+.+.. ++..+.. ....+. .|+.+.+.
T Consensus 72 i~~~~F~~~~~l~~i~~~~--~~~~i~~-~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPS--NITEIGS-SSFSNC-NLKEINIP 111 (129)
T ss_dssp E-TTTTTT-TTECEEEETT--T-BEEHT-TTTTT--T--EEE-T
T ss_pred cccccccccccccccccCc--cccEEch-hhhcCC-CceEEEEC
Confidence 5444334477888888753 3554422 223333 66665544
No 66
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=90.18 E-value=0.03 Score=50.96 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=41.3
Q ss_pred cccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 7 IVPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 7 ~~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
.+|.|++|+++.|++..+- .+ ..+++|+.|+|++|....+|.- -.... +|+.|.+++|...
T Consensus 185 ll~ale~LnLshNk~~~v~--~L--r~l~~LkhLDlsyN~L~~vp~l-~~~gc-~L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD--NL--RRLPKLKHLDLSYNCLRHVPQL-SMVGC-KLQLLNLRNNALT 245 (1096)
T ss_pred HHHHhhhhccchhhhhhhH--HH--Hhcccccccccccchhcccccc-chhhh-hheeeeecccHHH
Confidence 3688999999998776532 11 3478899999999977666632 11122 3888888887544
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.77 E-value=0.25 Score=39.45 Aligned_cols=133 Identities=21% Similarity=0.246 Sum_probs=79.3
Q ss_pred CccEEEEecCCC--CCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcc
Q 041465 36 SLRELEIAEDNS--ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSK 113 (216)
Q Consensus 36 ~L~~L~i~~c~~--~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 113 (216)
+.+.+.+.+|.. ..+.. ....+..|+.|++.++... ..- .+-.+|+||+|.++.-. . ++..+...
T Consensus 19 ~v~~l~lD~~~s~~g~~~g--l~d~~~~le~ls~~n~glt-t~~--------~~P~Lp~LkkL~lsdn~-~-~~~~~l~v 85 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGG--LTDEFVELELLSVINVGLT-TLT--------NFPKLPKLKKLELSDNY-R-RVSGGLEV 85 (260)
T ss_pred hhhhhhcchhhhcCCCccc--ccccccchhhhhhhcccee-ecc--------cCCCcchhhhhcccCCc-c-ccccccee
Confidence 345566667743 22332 3347788999998887665 221 12257899999887641 1 11111001
Q ss_pred cCCcCCcccEEEEecCcC--ceeecCCCcccCCCccEEEEecCCCCcccCC--chHHhhccCCcEEEEecCccch
Q 041465 114 LGPIFQYLEILKVYHCQS--LLILLPSSSVSFRNLTKLVAFGCKKLLHMVT--SSTAKTLVQLVTVSICGCSAMT 184 (216)
Q Consensus 114 ~~~~l~~L~~L~i~~c~~--L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~~~~l~~L~~L~i~~C~~l~ 184 (216)
....+++|++|.++++.. +.++.| ...+.+|..|+...|+-.. +-. ...+.-+++|+.|+-.++..-+
T Consensus 86 l~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 86 LAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred hhhhCCceeEEeecCCccccccccch--hhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCcc
Confidence 112458999999988642 334433 3568899999999997533 211 1245567888988877776544
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=88.63 E-value=0.43 Score=22.73 Aligned_cols=9 Identities=33% Similarity=0.301 Sum_probs=3.9
Q ss_pred ccEEEEecC
Q 041465 121 LEILKVYHC 129 (216)
Q Consensus 121 L~~L~i~~c 129 (216)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 344444444
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=85.53 E-value=0.17 Score=36.97 Aligned_cols=57 Identities=18% Similarity=0.328 Sum_probs=30.4
Q ss_pred CccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcc
Q 041465 36 SLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRH 101 (216)
Q Consensus 36 ~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~ 101 (216)
.|+..+++++....||.. +...+|.++.|.+.++... ++ |+ .+..+|.|+.|.+..-
T Consensus 54 el~~i~ls~N~fk~fp~k-ft~kf~t~t~lNl~~neis-dv-Pe------E~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKK-FTIKFPTATTLNLANNEIS-DV-PE------ELAAMPALRSLNLRFN 110 (177)
T ss_pred eEEEEecccchhhhCCHH-Hhhccchhhhhhcchhhhh-hc-hH------HHhhhHHhhhcccccC
Confidence 455556666665666655 5555556666666655444 22 21 1334566666655543
No 70
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.44 E-value=0.45 Score=23.64 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=8.3
Q ss_pred CCccEEEEecCCCCc
Q 041465 144 RNLTKLVAFGCKKLL 158 (216)
Q Consensus 144 ~~L~~L~i~~C~~L~ 158 (216)
++|++|++++|.+++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 455556666665544
No 71
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=83.26 E-value=0.095 Score=43.63 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=66.1
Q ss_pred ccccceEEcccccccccccCC--C--CccccCCccEEEEecCCCC---CcChHHHHhhCCCCcEEEEeecCCceeEeccC
Q 041465 8 VPNLKELSLSGKDVKLILQAD--F--PQHFFGSLRELEIAEDNSA---CFPIWNVLERFHNLEKLILVCFSFNEEVFSEE 80 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~--~--~~~~~~~L~~L~i~~c~~~---~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~ 80 (216)
.|.|+.+.+..+.+.. ++. . ....+++|+.|++.+|..+ .......+..+++|+.|++++|... . .
T Consensus 184 ~~~leevr~~qN~I~~--eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~-~----~ 256 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRP--EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE-N----E 256 (382)
T ss_pred ccccceEEEecccccC--chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc-c----c
Confidence 5889999998866541 111 0 0124789999999999421 1110002346678999999998654 1 2
Q ss_pred cccc---ccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCc
Q 041465 81 GCLE---KHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQ 130 (216)
Q Consensus 81 ~~~~---~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~ 130 (216)
|... ..-...|+|+.|.+.++.--+.=...-.......+.|+.|.+++|.
T Consensus 257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 257 GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 2210 0112488999999887632111000000001236789999998886
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=83.02 E-value=0.39 Score=41.36 Aligned_cols=61 Identities=20% Similarity=0.144 Sum_probs=44.5
Q ss_pred ccccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 6 QIVPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 6 ~~~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
..+++|++|+++++.+..++.- ..++.|+.|++++|....+..- ..+++|+.++++++...
T Consensus 115 ~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~~---~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISGL---ESLKSLKLLDLSYNRIV 175 (414)
T ss_pred hhhhcchheeccccccccccch----hhccchhhheeccCcchhccCC---ccchhhhcccCCcchhh
Confidence 3488999999999988876532 3466789999999877665532 25778888888777654
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.14 E-value=1.4 Score=21.63 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=7.7
Q ss_pred CccEEEEecCCCCCcCh
Q 041465 36 SLRELEIAEDNSACFPI 52 (216)
Q Consensus 36 ~L~~L~i~~c~~~~~p~ 52 (216)
+|++|++++|....+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44444444444444443
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.14 E-value=1.4 Score=21.63 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=7.7
Q ss_pred CccEEEEecCCCCCcCh
Q 041465 36 SLRELEIAEDNSACFPI 52 (216)
Q Consensus 36 ~L~~L~i~~c~~~~~p~ 52 (216)
+|++|++++|....+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44444444444444443
No 75
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.57 E-value=0.72 Score=40.79 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=53.5
Q ss_pred ccccccceEEcccccccccccCCCCccccCCccEEEEecCCC-----CCcChHHHHhhCCCCcEEEEeecCCceeEeccC
Q 041465 6 QIVPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNS-----ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEE 80 (216)
Q Consensus 6 ~~~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~-----~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~ 80 (216)
..+|.+..+++++|.+..+-.-.--....|+|+.|+++++.. ..++.. +..-||+|.+.+|+.+ .-|...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~----k~l~Leel~l~GNPlc-~tf~~~ 289 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL----KGLPLEELVLEGNPLC-TTFSDR 289 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh----cCCCHHHeeecCCccc-cchhhh
Confidence 457889999999977765321000113479999999999933 223322 4556999999999888 555321
Q ss_pred cccccc-ccccccccEEe
Q 041465 81 GCLEKH-VGKLAMIKTLE 97 (216)
Q Consensus 81 ~~~~~~-~~~l~~L~~L~ 97 (216)
...... ...||+|..|+
T Consensus 290 s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 290 SEYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHHhcchheeec
Confidence 110001 12588887775
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=71.45 E-value=0.95 Score=33.14 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=39.0
Q ss_pred ccEEEEecCCCCCcChH-HHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcccC
Q 041465 37 LRELEIAEDNSACFPIW-NVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLG 115 (216)
Q Consensus 37 L~~L~i~~c~~~~~p~~-~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~ 115 (216)
+-.+++++|....++.- +.......|...+++++.+. -||.. ....+|.++.+.+.+- ++..+..+ .+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk--~fp~k-----ft~kf~t~t~lNl~~n-eisdvPeE-~A-- 97 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK--KFPKK-----FTIKFPTATTLNLANN-EISDVPEE-LA-- 97 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh--hCCHH-----Hhhccchhhhhhcchh-hhhhchHH-Hh--
Confidence 44556666654333322 01224455555666666544 23311 1124555666655442 34444433 21
Q ss_pred CcCCcccEEEEecCc
Q 041465 116 PIFQYLEILKVYHCQ 130 (216)
Q Consensus 116 ~~l~~L~~L~i~~c~ 130 (216)
.++.|+.|.++.++
T Consensus 98 -am~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 98 -AMPALRSLNLRFNP 111 (177)
T ss_pred -hhHHhhhcccccCc
Confidence 35666777666654
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=62.93 E-value=4.6 Score=19.31 Aligned_cols=13 Identities=46% Similarity=0.831 Sum_probs=5.7
Q ss_pred cccceEEcccccc
Q 041465 9 PNLKELSLSGKDV 21 (216)
Q Consensus 9 p~Le~L~l~~~~l 21 (216)
++|++|+|+++.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 4555555555443
No 78
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=61.13 E-value=5.7 Score=18.58 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=14.2
Q ss_pred ccceEEcccccccccccC
Q 041465 10 NLKELSLSGKDVKLILQA 27 (216)
Q Consensus 10 ~Le~L~l~~~~l~~i~~~ 27 (216)
+|-+|++.+.+++.+|.+
T Consensus 1 ~LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEG 18 (20)
T ss_pred CcEEEECCCCChHHhcCc
Confidence 467888888888888865
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=61.02 E-value=6.9 Score=19.56 Aligned_cols=15 Identities=47% Similarity=0.620 Sum_probs=10.6
Q ss_pred cccceEEcccccccc
Q 041465 9 PNLKELSLSGKDVKL 23 (216)
Q Consensus 9 p~Le~L~l~~~~l~~ 23 (216)
.+|+.|+++.|.++.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 567777777776655
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=55.11 E-value=7.5 Score=19.50 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=10.5
Q ss_pred CccEEEEecCCCCCcCh
Q 041465 36 SLRELEIAEDNSACFPI 52 (216)
Q Consensus 36 ~L~~L~i~~c~~~~~p~ 52 (216)
+|+.|+++++....+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666666666655553
No 81
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=50.54 E-value=36 Score=19.01 Aligned_cols=9 Identities=33% Similarity=0.449 Sum_probs=4.5
Q ss_pred CccEEEEec
Q 041465 36 SLRELEIAE 44 (216)
Q Consensus 36 ~L~~L~i~~ 44 (216)
++++|.+.+
T Consensus 13 ~l~~L~~g~ 21 (44)
T PF05725_consen 13 SLKSLIFGS 21 (44)
T ss_pred CCeEEEECC
Confidence 455555533
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=33.20 E-value=32 Score=17.15 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=6.3
Q ss_pred ccceEEcccccc
Q 041465 10 NLKELSLSGKDV 21 (216)
Q Consensus 10 ~Le~L~l~~~~l 21 (216)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555443
No 83
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=20.20 E-value=1.4e+02 Score=24.73 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=23.6
Q ss_pred cCCccEEEEecC-CCCCcChH--HHHhhCCCCcEEEEeecCC
Q 041465 34 FGSLRELEIAED-NSACFPIW--NVLERFHNLEKLILVCFSF 72 (216)
Q Consensus 34 ~~~L~~L~i~~c-~~~~~p~~--~~~~~l~~L~~L~i~~c~~ 72 (216)
+|+|+..+++++ ....+|.. .++++-+.|++|.+.+|..
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 567777777777 23444422 1344666777777777654
Done!