Query 041465
Match_columns 216
No_of_seqs 246 out of 1201
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 12:17:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.7 5.3E-16 1.8E-20 127.7 12.8 61 8-73 103-163 (328)
2 4fcg_A Uncharacterized protein 99.6 5.9E-15 2E-19 121.5 13.6 159 8-184 80-243 (328)
3 2o6q_A Variable lymphocyte rec 99.6 1.9E-14 6.7E-19 115.0 13.5 181 8-213 36-216 (270)
4 3zyi_A Leucine-rich repeat-con 99.6 2.3E-14 7.8E-19 122.6 13.1 160 9-180 75-252 (452)
5 3zyj_A Leucine-rich repeat-con 99.6 2.2E-14 7.6E-19 122.3 12.5 161 8-180 63-241 (440)
6 2xwt_C Thyrotropin receptor; s 99.6 1.9E-14 6.7E-19 112.8 11.0 190 8-215 30-239 (239)
7 2xwt_C Thyrotropin receptor; s 99.6 5.5E-14 1.9E-18 110.2 13.0 155 8-180 54-215 (239)
8 1ozn_A Reticulon 4 receptor; N 99.5 3.2E-14 1.1E-18 114.4 11.5 85 8-101 31-115 (285)
9 1ozn_A Reticulon 4 receptor; N 99.5 1.1E-13 3.9E-18 111.2 13.3 181 8-213 55-236 (285)
10 3zyi_A Leucine-rich repeat-con 99.5 6.5E-14 2.2E-18 119.8 12.5 153 11-181 56-229 (452)
11 3zyj_A Leucine-rich repeat-con 99.5 1.1E-13 3.8E-18 118.0 13.6 152 11-180 45-217 (440)
12 3rfs_A Internalin B, repeat mo 99.5 1.4E-13 4.7E-18 110.2 12.6 176 8-212 40-215 (272)
13 2id5_A Lingo-1, leucine rich r 99.5 1.4E-13 4.7E-18 118.3 12.6 63 8-73 31-93 (477)
14 3o6n_A APL1; leucine-rich repe 99.5 1.1E-13 3.9E-18 115.9 11.6 38 34-72 116-153 (390)
15 2id5_A Lingo-1, leucine rich r 99.5 7E-13 2.4E-17 113.9 16.0 180 8-212 55-234 (477)
16 2z80_A TOLL-like receptor 2, v 99.5 8E-14 2.7E-18 115.4 9.5 158 8-180 51-208 (353)
17 2o6q_A Variable lymphocyte rec 99.5 2.6E-13 9.1E-18 108.3 11.9 157 8-181 60-216 (270)
18 3m19_A Variable lymphocyte rec 99.5 4.9E-13 1.7E-17 105.6 11.8 157 8-181 34-190 (251)
19 3oja_B Anopheles plasmodium-re 99.5 2.7E-13 9.2E-18 119.9 11.4 38 34-72 122-159 (597)
20 3rfs_A Internalin B, repeat mo 99.5 5.1E-13 1.8E-17 106.8 11.2 155 8-181 62-216 (272)
21 3m19_A Variable lymphocyte rec 99.4 8.7E-13 3E-17 104.2 12.2 177 9-213 14-190 (251)
22 2z66_A Variable lymphocyte rec 99.4 4.7E-13 1.6E-17 108.5 10.6 188 8-213 51-259 (306)
23 1xku_A Decorin; proteoglycan, 99.4 2.5E-12 8.5E-17 105.4 14.2 192 8-213 75-304 (330)
24 2z66_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 106.3 11.6 179 8-212 27-233 (306)
25 2z80_A TOLL-like receptor 2, v 99.4 1.9E-12 6.3E-17 107.2 12.9 159 8-181 75-233 (353)
26 1p9a_G Platelet glycoprotein I 99.4 1.8E-12 6.1E-17 104.8 12.5 182 8-212 9-205 (290)
27 3t6q_A CD180 antigen; protein- 99.4 1.9E-12 6.4E-17 114.2 13.2 60 8-71 277-336 (606)
28 3v47_A TOLL-like receptor 5B a 99.4 2.1E-12 7.1E-17 110.0 13.0 62 117-181 297-358 (455)
29 2ast_B S-phase kinase-associat 99.4 4.1E-14 1.4E-18 116.0 2.3 114 89-212 166-282 (336)
30 1h6u_A Internalin H; cell adhe 99.4 1.2E-12 4E-17 106.7 10.7 59 8-73 40-98 (308)
31 3o6n_A APL1; leucine-rich repe 99.4 3.7E-12 1.2E-16 106.7 13.7 63 8-73 68-130 (390)
32 1p9a_G Platelet glycoprotein I 99.4 2E-12 6.7E-17 104.6 11.6 153 8-181 54-206 (290)
33 2z81_A CD282 antigen, TOLL-lik 99.4 8.8E-13 3E-17 114.9 10.0 135 8-155 25-159 (549)
34 3oja_B Anopheles plasmodium-re 99.4 2.6E-12 9E-17 113.6 12.5 63 8-73 74-136 (597)
35 3vq2_A TLR4, TOLL-like recepto 99.4 1.4E-12 4.7E-17 115.1 10.5 182 8-213 349-556 (606)
36 2z62_A TOLL-like receptor 4, v 99.4 5.1E-12 1.7E-16 101.0 12.8 156 8-180 27-187 (276)
37 4ezg_A Putative uncharacterize 99.4 4.1E-12 1.4E-16 96.8 11.7 149 8-180 43-191 (197)
38 2ast_B S-phase kinase-associat 99.4 4.9E-14 1.7E-18 115.6 0.8 57 9-70 70-128 (336)
39 4fmz_A Internalin; leucine ric 99.4 4.1E-12 1.4E-16 104.6 12.3 177 8-213 154-344 (347)
40 2z62_A TOLL-like receptor 4, v 99.4 1.2E-12 4E-17 104.7 8.7 157 8-181 51-211 (276)
41 1ogq_A PGIP-2, polygalacturona 99.4 2.3E-12 7.8E-17 105.2 10.5 183 8-214 100-303 (313)
42 4ay9_X Follicle-stimulating ho 99.4 6.7E-12 2.3E-16 103.9 12.9 164 8-186 29-217 (350)
43 3t6q_A CD180 antigen; protein- 99.4 5.6E-12 1.9E-16 111.2 13.1 86 8-101 300-386 (606)
44 1wwl_A Monocyte differentiatio 99.4 9.1E-13 3.1E-17 107.4 7.5 163 8-181 94-264 (312)
45 3v47_A TOLL-like receptor 5B a 99.4 6.4E-12 2.2E-16 107.0 13.0 86 117-213 321-406 (455)
46 2ft3_A Biglycan; proteoglycan, 99.4 9.4E-12 3.2E-16 102.1 13.3 166 8-181 53-275 (332)
47 3o53_A Protein LRIM1, AGAP0063 99.3 2.1E-12 7.3E-17 105.4 8.7 181 8-212 33-224 (317)
48 2z81_A CD282 antigen, TOLL-lik 99.3 1.6E-11 5.4E-16 107.0 14.7 159 7-181 48-207 (549)
49 3oja_A Leucine-rich immune mol 99.3 3E-12 1E-16 110.7 9.8 182 7-212 32-224 (487)
50 3vq2_A TLR4, TOLL-like recepto 99.3 8.8E-13 3E-17 116.3 6.5 184 7-212 326-531 (606)
51 1ogq_A PGIP-2, polygalacturona 99.3 2.7E-12 9.2E-17 104.7 9.0 153 8-180 75-231 (313)
52 4fmz_A Internalin; leucine ric 99.3 8.8E-12 3E-16 102.6 11.8 59 8-73 43-101 (347)
53 2z63_A TOLL-like receptor 4, v 99.3 8.3E-13 2.8E-17 115.4 5.9 185 7-213 323-529 (570)
54 3o53_A Protein LRIM1, AGAP0063 99.3 7.3E-12 2.5E-16 102.2 10.9 177 8-213 57-248 (317)
55 1xku_A Decorin; proteoglycan, 99.3 1.1E-11 3.9E-16 101.4 12.0 188 8-212 51-273 (330)
56 3rgz_A Protein brassinosteroid 99.3 1.5E-11 5.1E-16 111.8 13.6 61 118-181 631-691 (768)
57 1h6u_A Internalin H; cell adhe 99.3 2.1E-11 7E-16 99.3 12.3 166 8-212 62-227 (308)
58 1h6t_A Internalin B; cell adhe 99.3 1.2E-11 4.1E-16 99.9 10.5 144 8-180 45-188 (291)
59 3oja_A Leucine-rich immune mol 99.3 1.3E-11 4.5E-16 106.7 11.2 177 8-213 57-248 (487)
60 3rgz_A Protein brassinosteroid 99.3 9.8E-12 3.4E-16 113.0 10.0 154 35-212 394-548 (768)
61 1ziw_A TOLL-like receptor 3; i 99.3 2.4E-11 8.4E-16 108.5 12.3 158 8-181 24-182 (680)
62 1o6v_A Internalin A; bacterial 99.3 4.1E-11 1.4E-15 102.8 12.9 58 8-72 176-233 (466)
63 4eco_A Uncharacterized protein 99.3 3.9E-11 1.3E-15 106.9 13.0 168 10-186 403-581 (636)
64 2v9t_B SLIT homolog 2 protein 99.3 3.9E-11 1.3E-15 93.1 11.2 150 12-181 14-163 (220)
65 2z63_A TOLL-like receptor 4, v 99.3 2E-11 6.8E-16 106.7 10.6 178 10-212 305-504 (570)
66 1m9s_A Internalin B; cell inva 99.3 1.8E-11 6.1E-16 108.5 10.2 144 8-180 42-185 (605)
67 1ziw_A TOLL-like receptor 3; i 99.3 9.6E-11 3.3E-15 104.7 14.4 64 9-73 222-285 (680)
68 2v70_A SLIT-2, SLIT homolog 2 99.2 5.7E-11 1.9E-15 92.1 11.0 151 11-181 13-164 (220)
69 1h6t_A Internalin B; cell adhe 99.2 4.2E-11 1.4E-15 96.7 10.7 145 8-181 67-211 (291)
70 4ezg_A Putative uncharacterize 99.2 2.4E-11 8.2E-16 92.5 8.7 151 32-212 41-191 (197)
71 1o6v_A Internalin A; bacterial 99.2 5.9E-11 2E-15 101.7 11.7 59 8-73 198-256 (466)
72 2o6s_A Variable lymphocyte rec 99.2 8.4E-11 2.9E-15 90.0 11.4 130 35-179 28-157 (208)
73 4g8a_A TOLL-like receptor 4; l 99.2 4.9E-11 1.7E-15 105.0 11.2 137 9-161 52-189 (635)
74 4glp_A Monocyte differentiatio 99.2 1.2E-11 4.2E-16 100.5 6.4 87 8-102 90-180 (310)
75 4ecn_A Leucine-rich repeat pro 99.2 1.1E-10 3.8E-15 107.2 13.4 160 35-213 673-838 (876)
76 2o6s_A Variable lymphocyte rec 99.2 9.8E-11 3.3E-15 89.7 10.8 133 8-155 27-159 (208)
77 3e6j_A Variable lymphocyte rec 99.2 6.4E-11 2.2E-15 92.3 9.8 131 34-180 39-169 (229)
78 3j0a_A TOLL-like receptor 5; m 99.2 2.1E-10 7.2E-15 105.2 14.7 162 6-182 21-186 (844)
79 3e6j_A Variable lymphocyte rec 99.2 1.2E-10 4E-15 90.8 11.1 132 8-155 39-170 (229)
80 2xot_A Amphoterin-induced prot 99.2 8.4E-11 2.9E-15 97.7 10.6 157 8-180 38-199 (361)
81 1wwl_A Monocyte differentiatio 99.2 1E-11 3.5E-16 101.1 4.4 183 6-212 118-306 (312)
82 4glp_A Monocyte differentiatio 99.2 5.4E-12 1.8E-16 102.7 2.7 185 6-212 114-304 (310)
83 2z7x_B TOLL-like receptor 1, v 99.2 1.2E-10 4.2E-15 100.8 11.4 59 119-181 421-479 (520)
84 3bz5_A Internalin-J, INLJ; leu 99.2 1.9E-10 6.5E-15 98.6 12.4 58 8-73 41-98 (457)
85 1m9s_A Internalin B; cell inva 99.2 7.3E-11 2.5E-15 104.6 10.0 146 8-182 64-209 (605)
86 4ay9_X Follicle-stimulating ho 99.2 3E-10 1E-14 93.9 12.9 153 12-180 12-164 (350)
87 2v9t_B SLIT homolog 2 protein 99.2 1.5E-10 5E-15 89.8 10.3 133 8-155 31-163 (220)
88 2ft3_A Biglycan; proteoglycan, 99.2 1.2E-10 4.2E-15 95.4 10.2 149 10-181 34-183 (332)
89 4g8a_A TOLL-like receptor 4; l 99.2 1.2E-10 4E-15 102.6 10.5 133 35-181 52-184 (635)
90 3bz5_A Internalin-J, INLJ; leu 99.2 8.5E-11 2.9E-15 100.8 9.2 57 8-73 126-183 (457)
91 2v70_A SLIT-2, SLIT homolog 2 99.1 2.5E-10 8.5E-15 88.5 10.5 134 8-155 31-164 (220)
92 4eco_A Uncharacterized protein 99.1 8.2E-11 2.8E-15 104.8 7.7 187 8-216 432-633 (636)
93 3j0a_A TOLL-like receptor 5; m 99.1 6.6E-10 2.2E-14 102.0 13.7 148 15-181 10-159 (844)
94 2xot_A Amphoterin-induced prot 99.1 5.2E-10 1.8E-14 92.9 11.5 155 11-186 20-178 (361)
95 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 3.7E-10 1.3E-14 98.9 11.1 156 7-181 351-508 (562)
96 1xeu_A Internalin C; cellular 99.1 6.3E-11 2.2E-15 94.4 5.6 144 8-181 40-183 (263)
97 2z7x_B TOLL-like receptor 1, v 99.1 1.7E-09 5.9E-14 93.6 14.6 145 12-182 3-150 (520)
98 3g06_A SSPH2 (leucine-rich rep 99.1 1.4E-09 4.9E-14 96.6 14.0 39 7-51 79-117 (622)
99 1xeu_A Internalin C; cellular 99.1 8.5E-10 2.9E-14 87.8 10.7 144 8-181 18-161 (263)
100 4ecn_A Leucine-rich repeat pro 99.0 3.5E-10 1.2E-14 104.0 7.8 153 9-182 673-839 (876)
101 2ell_A Acidic leucine-rich nuc 99.0 2.8E-10 9.5E-15 84.2 5.9 136 34-187 23-163 (168)
102 2ell_A Acidic leucine-rich nuc 99.0 4.3E-10 1.5E-14 83.1 6.1 132 7-155 22-158 (168)
103 2p1m_B Transport inhibitor res 99.0 9.7E-11 3.3E-15 102.8 2.8 37 143-180 288-324 (594)
104 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 6.6E-09 2.3E-13 91.0 13.5 149 8-182 30-181 (562)
105 1w8a_A SLIT protein; signaling 99.0 4.2E-09 1.4E-13 79.7 10.4 128 11-155 10-137 (192)
106 2o6r_A Variable lymphocyte rec 99.0 4E-09 1.4E-13 78.6 9.7 128 10-155 8-135 (177)
107 2p1m_B Transport inhibitor res 99.0 2.5E-10 8.6E-15 100.1 3.6 162 8-178 65-243 (594)
108 2wfh_A SLIT homolog 2 protein 99.0 5.7E-09 2E-13 79.2 10.6 125 12-155 13-137 (193)
109 3g06_A SSPH2 (leucine-rich rep 98.9 9.7E-09 3.3E-13 91.2 13.2 58 117-182 239-296 (622)
110 1jl5_A Outer protein YOPM; leu 98.9 1.1E-08 3.6E-13 87.7 12.6 56 117-181 193-248 (454)
111 1jl5_A Outer protein YOPM; leu 98.9 1E-08 3.4E-13 87.8 12.4 129 35-186 131-272 (454)
112 2ca6_A RAN GTPase-activating p 98.9 1.7E-09 6E-14 90.3 6.6 12 201-212 302-313 (386)
113 2je0_A Acidic leucine-rich nuc 98.9 5.4E-10 1.9E-14 80.9 3.0 59 118-178 87-148 (149)
114 3ogk_B Coronatine-insensitive 98.9 2.3E-09 7.9E-14 94.0 6.2 14 8-21 163-176 (592)
115 3ogk_B Coronatine-insensitive 98.9 1.6E-09 5.3E-14 95.1 4.9 61 8-72 136-204 (592)
116 2ca6_A RAN GTPase-activating p 98.8 3.9E-10 1.3E-14 94.2 0.8 63 8-73 59-135 (386)
117 3cvr_A Invasion plasmid antige 98.8 1.2E-08 4E-13 89.8 10.0 54 10-73 60-113 (571)
118 2je0_A Acidic leucine-rich nuc 98.8 1.3E-09 4.4E-14 78.9 2.8 39 142-181 86-124 (149)
119 1a9n_A U2A', U2A'; complex (nu 98.8 1.3E-08 4.4E-13 75.8 7.8 133 34-183 18-153 (176)
120 2o6r_A Variable lymphocyte rec 98.8 3.5E-08 1.2E-12 73.4 8.8 110 7-130 26-135 (177)
121 2wfh_A SLIT homolog 2 protein 98.7 4.7E-08 1.6E-12 74.0 9.3 125 38-181 13-137 (193)
122 3cvr_A Invasion plasmid antige 98.7 5.4E-08 1.8E-12 85.6 10.8 56 7-73 78-133 (571)
123 1w8a_A SLIT protein; signaling 98.7 9.4E-08 3.2E-12 72.2 10.1 110 8-130 28-137 (192)
124 1a9n_A U2A', U2A'; complex (nu 98.7 1.2E-08 4E-13 76.1 4.7 131 8-155 18-151 (176)
125 3sb4_A Hypothetical leucine ri 98.7 2.6E-07 8.9E-12 75.5 11.8 64 8-73 48-137 (329)
126 3goz_A Leucine-rich repeat-con 98.6 1.8E-08 6.1E-13 83.6 4.2 14 10-23 23-36 (362)
127 3goz_A Leucine-rich repeat-con 98.6 2.4E-08 8.2E-13 82.7 4.6 66 8-73 49-122 (362)
128 1z7x_W Ribonuclease inhibitor; 98.6 1.9E-09 6.4E-14 91.8 -3.6 12 201-212 255-266 (461)
129 1dce_A Protein (RAB geranylger 98.5 2.4E-07 8.2E-12 81.5 9.1 123 35-176 441-566 (567)
130 3g39_A Variable lymphocyte rec 98.5 4E-07 1.4E-11 67.4 7.8 79 10-101 10-88 (170)
131 3e4g_A ATP synthase subunit S, 98.5 8.5E-08 2.9E-12 71.6 3.9 90 91-185 61-154 (176)
132 2r9u_A Variable lymphocyte rec 98.5 3E-07 1E-11 68.4 6.9 103 11-130 14-116 (174)
133 3g39_A Variable lymphocyte rec 98.5 3.1E-07 1.1E-11 68.0 6.9 84 8-101 29-112 (170)
134 4b8c_D Glucose-repressible alc 98.5 1.1E-07 3.8E-12 86.0 5.2 108 34-159 223-330 (727)
135 3e4g_A ATP synthase subunit S, 98.5 8.3E-08 2.8E-12 71.6 3.5 93 60-159 61-154 (176)
136 1dce_A Protein (RAB geranylger 98.4 4.9E-07 1.7E-11 79.5 8.6 154 33-209 407-567 (567)
137 3sb4_A Hypothetical leucine ri 98.4 1.7E-06 5.9E-11 70.6 11.4 165 8-186 100-312 (329)
138 1ds9_A Outer arm dynein; leuci 98.4 1.7E-08 5.7E-13 76.6 -0.9 125 33-176 46-180 (198)
139 4b8c_D Glucose-repressible alc 98.4 1.8E-07 6.1E-12 84.6 5.2 153 8-182 172-328 (727)
140 2r9u_A Variable lymphocyte rec 98.4 9.5E-07 3.2E-11 65.7 7.9 103 37-155 14-116 (174)
141 1z7x_W Ribonuclease inhibitor; 98.4 2.1E-08 7.2E-13 85.2 -1.7 61 118-181 340-409 (461)
142 1ds9_A Outer arm dynein; leuci 98.3 6.9E-08 2.4E-12 73.2 -1.2 154 35-209 23-181 (198)
143 2ra8_A Uncharacterized protein 98.2 1E-06 3.5E-11 73.2 5.3 64 117-181 250-318 (362)
144 3un9_A NLR family member X1; l 97.9 2.7E-07 9.1E-12 77.0 -4.1 169 7-181 70-250 (372)
145 2ifg_A High affinity nerve gro 97.9 2E-05 6.8E-10 64.5 6.2 62 9-73 31-93 (347)
146 2ra8_A Uncharacterized protein 97.9 1.9E-05 6.5E-10 65.6 6.0 65 89-155 250-318 (362)
147 2ifg_A High affinity nerve gro 97.8 5.5E-05 1.9E-09 61.8 7.9 101 13-130 12-114 (347)
148 4fdw_A Leucine rich hypothetic 97.8 0.00031 1.1E-08 59.0 12.0 59 87-153 222-280 (401)
149 4fdw_A Leucine rich hypothetic 97.4 0.004 1.4E-07 52.2 13.3 149 9-180 203-355 (401)
150 3rw6_A Nuclear RNA export fact 97.1 0.00014 4.7E-09 57.8 1.8 61 33-102 168-231 (267)
151 3un9_A NLR family member X1; l 97.1 3E-05 1E-09 64.5 -2.6 144 9-159 101-253 (372)
152 3rfe_A Platelet glycoprotein I 94.9 0.031 1E-06 39.0 4.3 39 34-73 30-68 (130)
153 3rw6_A Nuclear RNA export fact 94.7 0.027 9.2E-07 44.5 4.1 65 57-130 167-231 (267)
154 4fs7_A Uncharacterized protein 92.9 0.61 2.1E-05 38.3 9.3 80 89-178 295-374 (394)
155 4fs7_A Uncharacterized protein 91.9 0.77 2.6E-05 37.7 8.7 60 87-153 316-375 (394)
156 4gt6_A Cell surface protein; l 90.2 1.6 5.6E-05 35.7 9.0 106 57-180 262-367 (394)
157 3rfe_A Platelet glycoprotein I 90.1 0.34 1.2E-05 33.6 4.1 42 4-47 25-67 (130)
158 4h09_A Hypothetical leucine ri 89.1 2.7 9.3E-05 34.0 9.5 125 9-152 217-341 (379)
159 4h09_A Hypothetical leucine ri 87.7 3.6 0.00012 33.3 9.4 126 34-178 216-341 (379)
160 1io0_A Tropomodulin; LRR prote 86.4 0.16 5.5E-06 37.3 0.4 113 34-155 35-162 (185)
161 4gt6_A Cell surface protein; l 84.8 5.1 0.00017 32.7 8.9 80 89-178 263-342 (394)
162 1io0_A Tropomodulin; LRR prote 71.3 1.5 5.1E-05 32.0 1.4 87 8-101 64-161 (185)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.67 E-value=5.3e-16 Score=127.73 Aligned_cols=61 Identities=13% Similarity=0.273 Sum_probs=39.2
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
+++|++|+++++.+..+. ..+ ..+++|++|++++|....+|.. + ..+++|++|++++|...
T Consensus 103 l~~L~~L~L~~n~l~~lp-~~~--~~l~~L~~L~Ls~n~l~~lp~~-l-~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELP-DTM--QQFAGLETLTLARNPLRALPAS-I-ASLNRLRELSIRACPEL 163 (328)
T ss_dssp GTTCSEEEEESSCCCCCC-SCG--GGGTTCSEEEEESCCCCCCCGG-G-GGCTTCCEEEEEEETTC
T ss_pred CCCCCEEECCCCCccchh-HHH--hccCCCCEEECCCCccccCcHH-H-hcCcCCCEEECCCCCCc
Confidence 566777777776665432 212 3467777777777766566665 4 36777777777777665
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.62 E-value=5.9e-15 Score=121.46 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=102.0
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
++++++|+++++++..+.+. + ..+++|++|++++|....+|.. + ..+++|++|++++|... .+ | ..+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l--~~l~~L~~L~L~~n~l~~lp~~-~-~~l~~L~~L~Ls~n~l~-~l-p------~~l 146 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-A--FRLSHLQHMTIDAAGLMELPDT-M-QQFAGLETLTLARNPLR-AL-P------ASI 146 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-G--GGGTTCSEEEEESSCCCCCCSC-G-GGGTTCSEEEEESCCCC-CC-C------GGG
T ss_pred ccceeEEEccCCCchhcChh-h--hhCCCCCEEECCCCCccchhHH-H-hccCCCCEEECCCCccc-cC-c------HHH
Confidence 57899999999888865432 2 3489999999999987788875 4 58999999999998766 43 3 135
Q ss_pred cccccccEEecCcccccceecccCc-----ccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCC
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDS-----KLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVT 162 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~-----~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~ 162 (216)
+.+++|+.|+++++..+..+..... .....+++|+.|++++| .++.++.. +..+++|++|++++|. ++.+++
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~N~-l~~l~~ 223 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-IANLQNLKSLKIRNSP-LSALGP 223 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG-GGGCTTCCEEEEESSC-CCCCCG
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh-hcCCCCCCEEEccCCC-CCcCch
Confidence 5788888888887665554432110 00112566666666665 34444322 4556666666666653 444321
Q ss_pred chHHhhccCCcEEEEecCccch
Q 041465 163 SSTAKTLVQLVTVSICGCSAMT 184 (216)
Q Consensus 163 ~~~~~~l~~L~~L~i~~C~~l~ 184 (216)
....+++|++|++++|....
T Consensus 224 --~l~~l~~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 224 --AIHHLPKLEELDLRGCTALR 243 (328)
T ss_dssp --GGGGCTTCCEEECTTCTTCC
T ss_pred --hhccCCCCCEEECcCCcchh
Confidence 23455666666666655443
No 3
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.9e-14 Score=114.97 Aligned_cols=181 Identities=20% Similarity=0.213 Sum_probs=121.8
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
.+++++|+++++++..+.+..+ ..+++|++|++++|....+|.. .+..+++|++|++++|... .+.+ ..+
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~l~-~~~~------~~~ 105 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAF--HRLTKLRLLYLNDNKLQTLPAG-IFKELKNLETLWVTDNKLQ-ALPI------GVF 105 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSS--SSCTTCCEEECCSSCCSCCCTT-TTSSCTTCCEEECCSSCCC-CCCT------TTT
T ss_pred CCCCCEEECcCCCCCeeCHHHh--cCCCCCCEEECCCCccCeeChh-hhcCCCCCCEEECCCCcCC-cCCH------hHc
Confidence 4578899998888776544333 3478899999999887777766 5567889999999888655 3322 124
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
..+++|++|++++. .+..+....+ ..+++|+.|+++++. ++.+++..+..+++|++|++++|. ++.+.+ ....
T Consensus 106 ~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~ 178 (270)
T 2o6q_A 106 DQLVNLAELRLDRN-QLKSLPPRVF---DSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQ-LKRVPE-GAFD 178 (270)
T ss_dssp TTCSSCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-TTTT
T ss_pred ccccCCCEEECCCC-ccCeeCHHHh---CcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCc-CcEeCh-hHhc
Confidence 56788888888875 4554432221 357888888888874 666655544567888888888874 666533 3345
Q ss_pred hccCCcEEEEecCccchhhccCCccccccceeecccccceecccCC
Q 041465 168 TLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDLE 213 (216)
Q Consensus 168 ~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~lp 213 (216)
.+++|++|+++++. +..+....- ..+++|+.|++.+-|
T Consensus 179 ~l~~L~~L~L~~N~-l~~~~~~~~-------~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 179 KLTELKTLKLDNNQ-LKRVPEGAF-------DSLEKLKMLQLQENP 216 (270)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTTT-------TTCTTCCEEECCSSC
T ss_pred cCCCcCEEECCCCc-CCcCCHHHh-------ccccCCCEEEecCCC
Confidence 67888888888874 544431110 136777888776654
No 4
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.57 E-value=2.3e-14 Score=122.59 Aligned_cols=160 Identities=14% Similarity=0.188 Sum_probs=73.5
Q ss_pred cccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccC-c------
Q 041465 9 PNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEE-G------ 81 (216)
Q Consensus 9 p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~-~------ 81 (216)
+++++|+++++++..+.+..+ ..+++|++|++++|....++.. .+..+++|++|++++|... .+.+.. +
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTF--RHLHHLEVLQLGRNSIRQIEVG-AFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCC
T ss_pred CCccEEECcCCcCceECHHHc--CCCCCCCEEECCCCccCCcChh-hccCcccCCEEECCCCcCC-ccChhhhcccCCCC
Confidence 466666666666655443332 2355666666666654444333 2335556666666555433 221100 0
Q ss_pred -----------cccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEE
Q 041465 82 -----------CLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLV 150 (216)
Q Consensus 82 -----------~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~ 150 (216)
.....+..+++|+.|+++++..+..+....+ ..+++|+.|++++|. ++.+ |. +..+++|++|+
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~---~~l~~L~~L~L~~n~-l~~~-~~-~~~l~~L~~L~ 224 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF---EGLFNLKYLNLGMCN-IKDM-PN-LTPLVGLEELE 224 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT---TTCTTCCEEECTTSC-CSSC-CC-CTTCTTCCEEE
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc---cCCCCCCEEECCCCc-cccc-cc-ccccccccEEE
Confidence 0001233455666666655555555433221 134555555555442 3333 22 33445555555
Q ss_pred EecCCCCcccCCchHHhhccCCcEEEEecC
Q 041465 151 AFGCKKLLHMVTSSTAKTLVQLVTVSICGC 180 (216)
Q Consensus 151 i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 180 (216)
++++. ++.+.+ .....+++|++|+++++
T Consensus 225 Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 225 MSGNH-FPEIRP-GSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp CTTSC-CSEECG-GGGTTCTTCCEEECTTS
T ss_pred CcCCc-CcccCc-ccccCccCCCEEEeCCC
Confidence 55442 333322 22344555555555544
No 5
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.57 E-value=2.2e-14 Score=122.29 Aligned_cols=161 Identities=16% Similarity=0.221 Sum_probs=73.5
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccC-c-----
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEE-G----- 81 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~-~----- 81 (216)
.++++.|++++++++.+.+..+ ..+++|++|++++|....++.. .+..+++|++|++++|... .+.+.. +
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 138 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSF--KHLRHLEILQLSRNHIRTIEIG-AFNGLANLNTLELFDNRLT-TIPNGAFVYLSKL 138 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTT--SSCSSCCEEECCSSCCCEECGG-GGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSC
T ss_pred CCCCcEEEccCCcCCeeCHHHh--hCCCCCCEEECCCCcCCccChh-hccCCccCCEEECCCCcCC-eeCHhHhhccccC
Confidence 3566666666666655443332 2355666666666655444433 3345666666666655433 221100 0
Q ss_pred ------------cccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEE
Q 041465 82 ------------CLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKL 149 (216)
Q Consensus 82 ------------~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L 149 (216)
.....+..+++|+.|+++++..+..+....+ ..+++|+.|++++|. ++.+ |. +..+++|++|
T Consensus 139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~---~~l~~L~~L~L~~n~-l~~~-~~-~~~l~~L~~L 212 (440)
T 3zyj_A 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF---EGLSNLRYLNLAMCN-LREI-PN-LTPLIKLDEL 212 (440)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT---TTCSSCCEEECTTSC-CSSC-CC-CTTCSSCCEE
T ss_pred ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh---hcccccCeecCCCCc-Cccc-cc-cCCCcccCEE
Confidence 0001133455556665555544444432211 134455555555442 3333 22 3344455555
Q ss_pred EEecCCCCcccCCchHHhhccCCcEEEEecC
Q 041465 150 VAFGCKKLLHMVTSSTAKTLVQLVTVSICGC 180 (216)
Q Consensus 150 ~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 180 (216)
++++| +++.+.+ .....+++|++|++.++
T Consensus 213 ~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 213 DLSGN-HLSAIRP-GSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp ECTTS-CCCEECT-TTTTTCTTCCEEECTTC
T ss_pred ECCCC-ccCccCh-hhhccCccCCEEECCCC
Confidence 55544 2433322 22334445555554444
No 6
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=1.9e-14 Score=112.84 Aligned_cols=190 Identities=14% Similarity=0.092 Sum_probs=102.2
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCC-CCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDN-SACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKH 86 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~-~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~ 86 (216)
.++|++|++++++++.+.+..+ ..+++|++|++++|. ...+|.. .+..+++|++|++++|..++.+.+ ..
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~--~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~------~~ 100 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAF--SNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDP------DA 100 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTT--TTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECT------TS
T ss_pred CCcccEEEEeCCcceEECHHHc--cCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCH------HH
Confidence 3478999999888887655443 347889999999986 6777765 445788999999988444424332 12
Q ss_pred ccccccccEEecCcccccceecccCcccCCcCCccc---EEEEecCcCceeecCCCcccCCCcc-EEEEecCCCCcccCC
Q 041465 87 VGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLE---ILKVYHCQSLLILLPSSSVSFRNLT-KLVAFGCKKLLHMVT 162 (216)
Q Consensus 87 ~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~---~L~i~~c~~L~~l~~~~~~~l~~L~-~L~i~~C~~L~~l~~ 162 (216)
+..+++|+.|+++++ .++.+.. + ..+++|+ .|++++++.++.+++..+..+++|+ +|+++++. ++.+..
T Consensus 101 f~~l~~L~~L~l~~n-~l~~lp~--~---~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~ 173 (239)
T 2xwt_C 101 LKELPLLKFLGIFNT-GLKMFPD--L---TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQG 173 (239)
T ss_dssp EECCTTCCEEEEEEE-CCCSCCC--C---TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECT
T ss_pred hCCCCCCCEEeCCCC-CCccccc--c---ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCH
Confidence 345667777776654 2333211 1 1233333 5666655455555444334455555 55555542 443322
Q ss_pred chHHhhccCCcEEEEecCccchhhccCCcccc---------------ccceeecccccceecccCCCC
Q 041465 163 SSTAKTLVQLVTVSICGCSAMTEVVINGKEGV---------------EKEEIVFCKLKALILSDLESL 215 (216)
Q Consensus 163 ~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~---------------~~~~~~~~~L~~L~l~~lp~L 215 (216)
..... ++|++|++.+|..++.+....-... ......|++|+.|++.+..+|
T Consensus 174 -~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 174 -YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp -TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC---
T ss_pred -hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCccCC
Confidence 11111 4555555555543333321100000 000114788888888887654
No 7
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=5.5e-14 Score=110.23 Aligned_cols=155 Identities=13% Similarity=0.091 Sum_probs=62.4
Q ss_pred ccccceEEccccc-ccccccCCCCccccCCccEEEEec-CCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccc
Q 041465 8 VPNLKELSLSGKD-VKLILQADFPQHFFGSLRELEIAE-DNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEK 85 (216)
Q Consensus 8 ~p~Le~L~l~~~~-l~~i~~~~~~~~~~~~L~~L~i~~-c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~ 85 (216)
+++|++|+++++. ++.+.+..+ ..+++|++|++++ +....+|.. .+..+++|++|++++|... . +|.
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f--~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~~L~~L~l~~n~l~-~-lp~------ 122 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSF--YNLSKVTHIEIRNTRNLTYIDPD-ALKELPLLKFLGIFNTGLK-M-FPD------ 122 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTE--ESCTTCCEEEEEEETTCCEECTT-SEECCTTCCEEEEEEECCC-S-CCC------
T ss_pred CCCCcEEeCCCCCCcceeCHhHc--CCCcCCcEEECCCCCCeeEcCHH-HhCCCCCCCEEeCCCCCCc-c-ccc------
Confidence 3445555555443 443322211 1244555555554 333333332 2234455555555544433 2 110
Q ss_pred ccccccccc---EEecCcccccceecccCcccCCcCCccc-EEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccC
Q 041465 86 HVGKLAMIK---TLELNRHYHLKQLCKQDSKLGPIFQYLE-ILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMV 161 (216)
Q Consensus 86 ~~~~l~~L~---~L~l~~~~~L~~l~~~~~~~~~~l~~L~-~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~ 161 (216)
++.+++|+ .|++++.+++..+....+ ..+++|+ .|+++++. ++.+++. ....++|++|++++|+.++.+.
T Consensus 123 -~~~l~~L~~L~~L~l~~N~~l~~i~~~~~---~~l~~L~~~L~l~~n~-l~~i~~~-~~~~~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 123 -LTKVYSTDIFFILEITDNPYMTSIPVNAF---QGLCNETLTLKLYNNG-FTSVQGY-AFNGTKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp -CTTCCBCCSEEEEEEESCTTCCEECTTTT---TTTBSSEEEEECCSCC-CCEECTT-TTTTCEEEEEECTTCTTCCEEC
T ss_pred -cccccccccccEEECCCCcchhhcCcccc---cchhcceeEEEcCCCC-CcccCHh-hcCCCCCCEEEcCCCCCcccCC
Confidence 22233333 555544444444432211 1244444 55554432 3333332 2222445555555444344432
Q ss_pred CchHHhhc-cCCcEEEEecC
Q 041465 162 TSSTAKTL-VQLVTVSICGC 180 (216)
Q Consensus 162 ~~~~~~~l-~~L~~L~i~~C 180 (216)
+ .....+ ++|++|+++++
T Consensus 197 ~-~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 197 K-DAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp T-TTTTTCSBCCSEEECTTC
T ss_pred H-HHhhccccCCcEEECCCC
Confidence 2 122334 44555555443
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.55 E-value=3.2e-14 Score=114.39 Aligned_cols=85 Identities=20% Similarity=0.141 Sum_probs=53.1
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
.++|++|+++++.+..+.+..+ ..+++|++|++++|....++.. .+..+++|++|++++|..+..+.+ ..+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~------~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASF--RACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDP------ATF 101 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCT------TTT
T ss_pred CCCceEEEeeCCcCCccCHHHc--ccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCH------HHh
Confidence 5688888888887776554333 3477888888888866555333 334788888888888764413322 123
Q ss_pred cccccccEEecCcc
Q 041465 88 GKLAMIKTLELNRH 101 (216)
Q Consensus 88 ~~l~~L~~L~l~~~ 101 (216)
..+++|++|+++++
T Consensus 102 ~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 102 HGLGRLHTLHLDRC 115 (285)
T ss_dssp TTCTTCCEEECTTS
T ss_pred cCCcCCCEEECCCC
Confidence 34555666655543
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.53 E-value=1.1e-13 Score=111.16 Aligned_cols=181 Identities=17% Similarity=0.141 Sum_probs=126.1
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCC-CCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDN-SACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKH 86 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~-~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~ 86 (216)
+++|++|+++++.+..+.+..+ ..+++|++|++++|. ...++.. .+..+++|++|++++|... .+.+ ..
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~~~~------~~ 124 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAF--TGLALLEQLDLSDNAQLRSVDPA-TFHGLGRLHTLHLDRCGLQ-ELGP------GL 124 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSCTTCCCCCTT-TTTTCTTCCEEECTTSCCC-CCCT------TT
T ss_pred CCCCCEEECCCCccceeCHhhc--CCccCCCEEeCCCCCCccccCHH-HhcCCcCCCEEECCCCcCC-EECH------hH
Confidence 6889999999888877644433 347889999999996 6666433 3458899999999888765 3322 23
Q ss_pred ccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHH
Q 041465 87 VGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTA 166 (216)
Q Consensus 87 ~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~ 166 (216)
++.+++|++|+++++ .+..+.... ...+++|+.|+++++ .++.+++..+..+++|++|+++++. ++.+.+ ...
T Consensus 125 ~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~ 197 (285)
T 1ozn_A 125 FRGLAALQYLYLQDN-ALQALPDDT---FRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHP-HAF 197 (285)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECT-TTT
T ss_pred hhCCcCCCEEECCCC-cccccCHhH---hccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCH-hHc
Confidence 557889999999886 455443221 235788999999987 4777766546678899999999875 666543 345
Q ss_pred hhccCCcEEEEecCccchhhccCCccccccceeecccccceecccCC
Q 041465 167 KTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDLE 213 (216)
Q Consensus 167 ~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~lp 213 (216)
..+++|++|+++++. +..+.... -..+++|++|++.+-|
T Consensus 198 ~~l~~L~~L~l~~n~-l~~~~~~~-------~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 198 RDLGRLMTLYLFANN-LSALPTEA-------LAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCTTCCEEECCSSC-CSCCCHHH-------HTTCTTCCEEECCSSC
T ss_pred cCcccccEeeCCCCc-CCcCCHHH-------cccCcccCEEeccCCC
Confidence 678899999999884 44332100 0146788888887654
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.53 E-value=6.5e-14 Score=119.77 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=88.3
Q ss_pred cceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccccccc
Q 041465 11 LKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKL 90 (216)
Q Consensus 11 Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l 90 (216)
...++..+.++..+ |.+..+++++|++++|....++.. .+..+++|++|++++|... .+.+. .+..+
T Consensus 56 ~~~v~c~~~~l~~i-----P~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~-~~~~~------~~~~l 122 (452)
T 3zyi_A 56 FSKVVCTRRGLSEV-----PQGIPSNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIR-QIEVG------AFNGL 122 (452)
T ss_dssp SCEEECCSSCCSSC-----CSCCCTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCC-EECTT------TTTTC
T ss_pred CcEEEECCCCcCcc-----CCCCCCCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccC-CcChh------hccCc
Confidence 45566666666653 323347899999999987666554 4568999999999998766 55431 23456
Q ss_pred ccccEEecCcccccceecccCcc---------------------cCCcCCcccEEEEecCcCceeecCCCcccCCCccEE
Q 041465 91 AMIKTLELNRHYHLKQLCKQDSK---------------------LGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKL 149 (216)
Q Consensus 91 ~~L~~L~l~~~~~L~~l~~~~~~---------------------~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L 149 (216)
++|++|++++. ++..+....+. ....+++|+.|++++|..++.+++..+..+++|++|
T Consensus 123 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 123 ASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp TTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred ccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 66666666543 23332211110 112345556666665555555544434455566666
Q ss_pred EEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 150 VAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 150 ~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
++++|. ++.+. ....+++|++|+++++.
T Consensus 202 ~L~~n~-l~~~~---~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 202 NLGMCN-IKDMP---NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp ECTTSC-CSSCC---CCTTCTTCCEEECTTSC
T ss_pred ECCCCc-ccccc---cccccccccEEECcCCc
Confidence 666553 44432 13445666666666653
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.53 E-value=1.1e-13 Score=117.97 Aligned_cols=152 Identities=18% Similarity=0.181 Sum_probs=92.1
Q ss_pred cceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccccccc
Q 041465 11 LKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKL 90 (216)
Q Consensus 11 Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l 90 (216)
...++..+.+++.+ |.+..++++.|++++|....++.. .+..+++|++|++++|... .+.+ ..+..+
T Consensus 45 ~~~v~c~~~~l~~i-----P~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~-~i~~------~~~~~l 111 (440)
T 3zyj_A 45 FSKVICVRKNLREV-----PDGISTNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIR-TIEI------GAFNGL 111 (440)
T ss_dssp SCEEECCSCCCSSC-----CSCCCTTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCC-EECG------GGGTTC
T ss_pred CCEEEeCCCCcCcC-----CCCCCCCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCC-ccCh------hhccCC
Confidence 45666666666654 333457899999999987777655 4568999999999998766 4433 123456
Q ss_pred ccccEEecCcccccceecccCcc---------------------cCCcCCcccEEEEecCcCceeecCCCcccCCCccEE
Q 041465 91 AMIKTLELNRHYHLKQLCKQDSK---------------------LGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKL 149 (216)
Q Consensus 91 ~~L~~L~l~~~~~L~~l~~~~~~---------------------~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L 149 (216)
++|++|++++. +++.+....+. ....+++|+.|++++|..+..+++..+..+++|++|
T Consensus 112 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 112 ANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp SSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred ccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 66666666543 23322211110 112355666666666666666555444556666666
Q ss_pred EEecCCCCcccCCchHHhhccCCcEEEEecC
Q 041465 150 VAFGCKKLLHMVTSSTAKTLVQLVTVSICGC 180 (216)
Q Consensus 150 ~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 180 (216)
++++|. ++.+. ....+++|++|++++|
T Consensus 191 ~L~~n~-l~~~~---~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 191 NLAMCN-LREIP---NLTPLIKLDELDLSGN 217 (440)
T ss_dssp ECTTSC-CSSCC---CCTTCSSCCEEECTTS
T ss_pred cCCCCc-Ccccc---ccCCCcccCEEECCCC
Confidence 666653 55442 1345667777777766
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=1.4e-13 Score=110.18 Aligned_cols=176 Identities=19% Similarity=0.175 Sum_probs=108.2
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|++|.+.++.++.+. + ...+++|++|++++|....++. +..+++|++|++++|... .+.+ ..+
T Consensus 40 l~~L~~L~l~~~~i~~~~-~---l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~n~l~-~~~~------~~~ 105 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-G---IQYLPNVRYLALGGNKLHDISA---LKELTNLTYLILTGNQLQ-SLPN------GVF 105 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-T---GGGCTTCCEEECTTSCCCCCGG---GTTCTTCCEEECTTSCCC-CCCT------TTT
T ss_pred ccceeeeeeCCCCccccc-c---cccCCCCcEEECCCCCCCCchh---hcCCCCCCEEECCCCccC-ccCh------hHh
Confidence 577888888876666531 1 2347888888888886655542 247888888888877655 3322 124
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
+.+++|++|+++++ ++..+.... ...+++|++|++++| .++.+++..+..+++|++|++++|. ++.+.+ ....
T Consensus 106 ~~l~~L~~L~L~~n-~l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~ 178 (272)
T 3rfs_A 106 DKLTNLKELVLVEN-QLQSLPDGV---FDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPE-GVFD 178 (272)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTT
T ss_pred cCCcCCCEEECCCC-cCCccCHHH---hccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccCH-HHhc
Confidence 46778888888776 344442221 124677888888777 4666655534567788888888774 655432 3345
Q ss_pred hccCCcEEEEecCccchhhccCCccccccceeecccccceecccC
Q 041465 168 TLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 168 ~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~l 212 (216)
.+++|++|++++|. +..+....- ..+++|++|++.+.
T Consensus 179 ~l~~L~~L~L~~N~-l~~~~~~~~-------~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQ-LKSVPDGVF-------DRLTSLQYIWLHDN 215 (272)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTTT-------TTCTTCCEEECCSS
T ss_pred CCccCCEEECCCCc-CCccCHHHH-------hCCcCCCEEEccCC
Confidence 67778888877774 433321110 13566777776653
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.51 E-value=1.4e-13 Score=118.27 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=33.8
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
.+++++|++++++++.+.+..+ ..+++|++|++++|....++.. .+..+++|++|++++|...
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEF--ASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTT--TTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCC
T ss_pred CCCCcEEECCCCccceECHhHc--cCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCCCcCC
Confidence 3466777776666665443333 2356666666666654433222 2335666666666655433
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.50 E-value=1.1e-13 Score=115.94 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=19.6
Q ss_pred cCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCC
Q 041465 34 FGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSF 72 (216)
Q Consensus 34 ~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~ 72 (216)
+++|++|++++|....+|.. ++..+++|++|++++|..
T Consensus 116 l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRG-IFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCccCcCCHH-HhcCCCCCcEEECCCCcc
Confidence 45555555555544445543 333555555555555543
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.49 E-value=7e-13 Score=113.86 Aligned_cols=180 Identities=19% Similarity=0.206 Sum_probs=125.0
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|++|+++++.+..+.+..+ ..+++|++|++++|....+|.. .+..+++|++|++++|... .+.+ ..+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~-~~~~------~~~ 124 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAF--NNLFNLRTLGLRSNRLKLIPLG-VFTGLSNLTKLDISENKIV-ILLD------YMF 124 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCSCCTT-SSTTCTTCCEEECTTSCCC-EECT------TTT
T ss_pred CCCCCEEECCCCccCEeChhhh--hCCccCCEEECCCCcCCccCcc-cccCCCCCCEEECCCCccc-cCCh------hHc
Confidence 6889999999888877655444 3478899999999887777765 5568899999999888766 4433 135
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
+.+++|++|++++. .+..+....+ ..+++|+.|++++|. ++.+++..+..+++|++|+++++. +..+.+ ....
T Consensus 125 ~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~-~~~~ 197 (477)
T 2id5_A 125 QDLYNLKSLEVGDN-DLVYISHRAF---SGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLN-INAIRD-YSFK 197 (477)
T ss_dssp TTCTTCCEEEECCT-TCCEECTTSS---TTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCC-CCEECT-TCSC
T ss_pred cccccCCEEECCCC-ccceeChhhc---cCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCc-CcEeCh-hhcc
Confidence 57889999998875 4555543322 357889999998874 555544334568899999999875 555533 3446
Q ss_pred hccCCcEEEEecCccchhhccCCccccccceeecccccceecccC
Q 041465 168 TLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 168 ~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~l 212 (216)
.+++|++|++++|..+..+..... ..++|++|++.++
T Consensus 198 ~l~~L~~L~l~~~~~~~~~~~~~~--------~~~~L~~L~l~~n 234 (477)
T 2id5_A 198 RLYRLKVLEISHWPYLDTMTPNCL--------YGLNLTSLSITHC 234 (477)
T ss_dssp SCTTCCEEEEECCTTCCEECTTTT--------TTCCCSEEEEESS
T ss_pred cCcccceeeCCCCccccccCcccc--------cCccccEEECcCC
Confidence 778899999999887665532111 1236666666543
No 16
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.49 E-value=8e-14 Score=115.42 Aligned_cols=158 Identities=17% Similarity=0.155 Sum_probs=75.8
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|++|++++++++.+.+..+ ..+++|++|++++|....++.. .+..+++|++|++++|... .+.+ ..+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~-~~~~------~~~ 120 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDL--QRCVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYNYLS-NLSS------SWF 120 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCS-SCCH------HHH
T ss_pred cccCcEEECCCCcCcccCHHHh--ccCCCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCCcCC-cCCH------hHh
Confidence 4567777777766665543322 2356677777766655444332 2346666666666666544 2211 113
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
+.+++|++|++++. .++.+... .....+++|++|++++|..++.+.+..+..+++|++|++++|. ++...+ ....
T Consensus 121 ~~l~~L~~L~L~~n-~l~~l~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~ 195 (353)
T 2z80_A 121 KPLSSLTFLNLLGN-PYKTLGET--SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEP-KSLK 195 (353)
T ss_dssp TTCTTCSEEECTTC-CCSSSCSS--CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECT-TTTT
T ss_pred CCCccCCEEECCCC-CCcccCch--hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCH-HHHh
Confidence 34555555555553 23332210 0112345555555555544444443333444555555555543 333221 1223
Q ss_pred hccCCcEEEEecC
Q 041465 168 TLVQLVTVSICGC 180 (216)
Q Consensus 168 ~l~~L~~L~i~~C 180 (216)
.+++|++|+++++
T Consensus 196 ~l~~L~~L~l~~n 208 (353)
T 2z80_A 196 SIQNVSHLILHMK 208 (353)
T ss_dssp TCSEEEEEEEECS
T ss_pred ccccCCeecCCCC
Confidence 3444444444444
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.49 E-value=2.6e-13 Score=108.34 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=120.6
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|++|+++++.+..+.+..+ ..+++|++|++++|....+|.. .+..+++|++|++++|... .+.+ ..+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~--~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~~~~------~~~ 129 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIF--KELKNLETLWVTDNKLQALPIG-VFDQLVNLAELRLDRNQLK-SLPP------RVF 129 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTT--SSCTTCCEEECCSSCCCCCCTT-TTTTCSSCCEEECCSSCCC-CCCT------TTT
T ss_pred CCCCCEEECCCCccCeeChhhh--cCCCCCCEEECCCCcCCcCCHh-HcccccCCCEEECCCCccC-eeCH------HHh
Confidence 6899999999988887654433 3478999999999988777766 5668999999999998766 4332 235
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
+.+++|++|+++++ .+..+.... ...+++|+.|++++|. ++.+++..+..+++|++|++++| .++.+.+ ....
T Consensus 130 ~~l~~L~~L~Ls~n-~l~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~ 202 (270)
T 2o6q_A 130 DSLTKLTYLSLGYN-ELQSLPKGV---FDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPE-GAFD 202 (270)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTT
T ss_pred CcCcCCCEEECCCC-cCCccCHhH---ccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCH-HHhc
Confidence 67999999999987 466554322 2357999999999884 66676654567899999999998 5777543 3456
Q ss_pred hccCCcEEEEecCc
Q 041465 168 TLVQLVTVSICGCS 181 (216)
Q Consensus 168 ~l~~L~~L~i~~C~ 181 (216)
.+++|+.|++.+++
T Consensus 203 ~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 203 SLEKLKMLQLQENP 216 (270)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccCCCEEEecCCC
Confidence 78999999998764
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.46 E-value=4.9e-13 Score=105.65 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=113.9
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
.+++++|+++++++..+.+..+ ..+++|++|++++|....++.. .+..+++|++|++++|... .+.+ ..+
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-~~~~------~~~ 103 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATF--RGLTKLTWLNLDYNQLQTLSAG-VFDDLTELGTLGLANNQLA-SLPL------GVF 103 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCC-CCCT------TTT
T ss_pred CCCCCEEEccCCCcCccCHhHh--cCcccCCEEECCCCcCCccCHh-HhccCCcCCEEECCCCccc-ccCh------hHh
Confidence 4678899998888777554433 3478899999999876656554 4558899999999888765 3322 124
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
+.+++|++|++++. +++.+....+ ..+++|+.|+++++ .++.+++..+..+++|++|+++++. ++.+.+ ....
T Consensus 104 ~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~ 176 (251)
T 3m19_A 104 DHLTQLDKLYLGGN-QLKSLPSGVF---DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPH-GAFD 176 (251)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-TTTT
T ss_pred cccCCCCEEEcCCC-cCCCcChhHh---ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc-CCccCH-HHHh
Confidence 57889999999886 5665533221 35789999999987 5777766546678999999999874 776543 3456
Q ss_pred hccCCcEEEEecCc
Q 041465 168 TLVQLVTVSICGCS 181 (216)
Q Consensus 168 ~l~~L~~L~i~~C~ 181 (216)
.+++|++|++++++
T Consensus 177 ~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 177 RLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSCC
T ss_pred CCCCCCEEEeeCCc
Confidence 78899999998865
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=2.7e-13 Score=119.91 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=18.4
Q ss_pred cCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCC
Q 041465 34 FGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSF 72 (216)
Q Consensus 34 ~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~ 72 (216)
+++|++|++++|....+|.. ++..+++|++|++++|..
T Consensus 122 l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRG-IFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCC
T ss_pred CCCCCEEEeeCCCCCCCCHH-HhccCCCCCEEEeeCCcC
Confidence 44555555555544444443 333455555555555443
No 20
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.45 E-value=5.1e-13 Score=106.84 Aligned_cols=155 Identities=21% Similarity=0.223 Sum_probs=119.1
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|++|+++++.+..+ + . ...+++|++|++++|....+|.. .+..+++|++|++++|... .+.+ ..+
T Consensus 62 l~~L~~L~l~~n~l~~~-~-~--l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-~~~~------~~~ 129 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDI-S-A--LKELTNLTYLILTGNQLQSLPNG-VFDKLTNLKELVLVENQLQ-SLPD------GVF 129 (272)
T ss_dssp CTTCCEEECTTSCCCCC-G-G--GTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCC-CCCT------TTT
T ss_pred CCCCcEEECCCCCCCCc-h-h--hcCCCCCCEEECCCCccCccChh-HhcCCcCCCEEECCCCcCC-ccCH------HHh
Confidence 79999999999887763 2 1 23588999999999987777765 5568999999999998765 4333 224
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
+.+++|+.|+++++ ++..+.... ...+++|+.|++++|. ++.+++..+..+++|++|++++|. ++.+.+ ....
T Consensus 130 ~~l~~L~~L~L~~n-~l~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~ 202 (272)
T 3rfs_A 130 DKLTNLTYLNLAHN-QLQSLPKGV---FDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPD-GVFD 202 (272)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-TTTT
T ss_pred ccCCCCCEEECCCC-ccCccCHHH---hccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc-CCccCH-HHHh
Confidence 57899999999987 566553322 2358899999999984 777766645678999999999985 776543 4456
Q ss_pred hccCCcEEEEecCc
Q 041465 168 TLVQLVTVSICGCS 181 (216)
Q Consensus 168 ~l~~L~~L~i~~C~ 181 (216)
.+++|++|++.+++
T Consensus 203 ~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 203 RLTSLQYIWLHDNP 216 (272)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCcCCCEEEccCCC
Confidence 78999999998864
No 21
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=8.7e-13 Score=104.22 Aligned_cols=177 Identities=17% Similarity=0.107 Sum_probs=129.2
Q ss_pred cccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccccc
Q 041465 9 PNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVG 88 (216)
Q Consensus 9 p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~ 88 (216)
++.+++++++++++.+.. ...++++.|++++|....++.. .+..+++|++|++++|... .+.+ ..+.
T Consensus 14 ~~~~~l~~~~~~l~~~p~-----~~~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-~~~~------~~~~ 80 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPS-----GIPADTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQ-TLSA------GVFD 80 (251)
T ss_dssp GGGTEEECTTCCCSSCCS-----CCCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCC-CCCT------TTTT
T ss_pred CCCeEEecCCCCccccCC-----CCCCCCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCC-ccCH------hHhc
Confidence 467889999888876432 2347899999999987666654 4568999999999998766 4333 2356
Q ss_pred ccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhh
Q 041465 89 KLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKT 168 (216)
Q Consensus 89 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 168 (216)
.+++|+.|++++. ++..+....+ ..+++|++|+++++ .++.+++..+..+++|++|+++++ +++.+.+ .....
T Consensus 81 ~l~~L~~L~L~~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~ 153 (251)
T 3m19_A 81 DLTELGTLGLANN-QLASLPLGVF---DHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA-GAFDK 153 (251)
T ss_dssp TCTTCCEEECTTS-CCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTT
T ss_pred cCCcCCEEECCCC-cccccChhHh---cccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCH-HHcCc
Confidence 7999999999986 4665543322 35899999999997 577776664467999999999998 5777643 34567
Q ss_pred ccCCcEEEEecCccchhhccCCccccccceeecccccceecccCC
Q 041465 169 LVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDLE 213 (216)
Q Consensus 169 l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~lp 213 (216)
+++|++|+++++. +..+....- ..+++|++|++.+-|
T Consensus 154 l~~L~~L~L~~N~-l~~~~~~~~-------~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 154 LTNLQTLSLSTNQ-LQSVPHGAF-------DRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTCCEEECCSSC-CSCCCTTTT-------TTCTTCCEEECCSCC
T ss_pred CcCCCEEECCCCc-CCccCHHHH-------hCCCCCCEEEeeCCc
Confidence 8999999999985 544432111 146788888887653
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.44 E-value=4.7e-13 Score=108.54 Aligned_cols=188 Identities=16% Similarity=0.136 Sum_probs=95.1
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCc------
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEG------ 81 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~------ 81 (216)
+++|++|+++++.+..+.........+++|++|++++|....+|.. + ..+++|++|++++|... .+.+...
T Consensus 51 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~-~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~ 127 (306)
T 2z66_A 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F-LGLEQLEHLDFQHSNLK-QMSEFSVFLSLRN 127 (306)
T ss_dssp CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-E-ETCTTCCEEECTTSEEE-SSTTTTTTTTCTT
T ss_pred cccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-c-CCCCCCCEEECCCCccc-ccccchhhhhccC
Confidence 5778888887766553210000001245666666666654444443 2 25566666666554332 1111000
Q ss_pred -------------cccccccccccccEEecCcccccce-ecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCcc
Q 041465 82 -------------CLEKHVGKLAMIKTLELNRHYHLKQ-LCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLT 147 (216)
Q Consensus 82 -------------~~~~~~~~l~~L~~L~l~~~~~L~~-l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~ 147 (216)
.....++.+++|+.|+++++. +.. ... .....+++|+.|++++|. ++.+.+..+..+++|+
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLP---DIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEEC---SCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCC
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccch---hHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCC
Confidence 000112345555555555542 111 111 112346677777777764 5555554455677777
Q ss_pred EEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecc-cccceecccCC
Q 041465 148 KLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFC-KLKALILSDLE 213 (216)
Q Consensus 148 ~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~-~L~~L~l~~lp 213 (216)
+|++++|. ++.+.+ .....+++|++|++++|. +....... -..+| +|++|++.+.|
T Consensus 203 ~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~-------~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 203 VLNMSHNN-FFSLDT-FPYKCLNSLQVLDYSLNH-IMTSKKQE-------LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EEECTTSC-CSBCCS-GGGTTCTTCCEEECTTSC-CCBCSSSS-------CCCCCTTCCEEECTTCC
T ss_pred EEECCCCc-cCccCh-hhccCcccCCEeECCCCC-CcccCHHH-------HHhhhccCCEEEccCCC
Confidence 77777764 555432 234567777777777774 33222111 11343 78888887653
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.43 E-value=2.5e-12 Score=105.37 Aligned_cols=192 Identities=13% Similarity=0.065 Sum_probs=91.0
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcC---------------------hHHHHhhCCCCcEEE
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFP---------------------IWNVLERFHNLEKLI 66 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p---------------------~~~~~~~l~~L~~L~ 66 (216)
+++|++|+++++.+..+.+..+ ..+++|++|++++|....+| .. .+..+++|++|+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~ 151 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAF--APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS-VFNGLNQMIVVE 151 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHH-HHTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCeeCHHHh--cCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHh-HhcCCccccEEE
Confidence 5677777777766655433322 13455555555555443343 33 334555555555
Q ss_pred EeecCCceeEeccCccccccccccccccEEecCccc----------ccceecccCc-------ccCCcCCcccEEEEecC
Q 041465 67 LVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHY----------HLKQLCKQDS-------KLGPIFQYLEILKVYHC 129 (216)
Q Consensus 67 i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------~L~~l~~~~~-------~~~~~l~~L~~L~i~~c 129 (216)
+++|... .. +.....++.+++|+.|+++++. +|+.+...+. .....+++|+.|++++|
T Consensus 152 l~~n~l~-~~----~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 152 LGTNPLK-SS----GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp CCSSCCC-GG----GBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred CCCCcCC-cc----CcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 5555432 10 0001123345666666665431 2222211110 01123556666666665
Q ss_pred cCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceec
Q 041465 130 QSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALIL 209 (216)
Q Consensus 130 ~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l 209 (216)
. ++.+.+..+..+++|++|++++|. ++.++ .....+++|++|++++|. +..+....-.. ......++.|+.|++
T Consensus 227 ~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp--~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~-~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 227 S-ISAVDNGSLANTPHLRELHLNNNK-LVKVP--GGLADHKYIQVVYLHNNN-ISAIGSNDFCP-PGYNTKKASYSGVSL 300 (330)
T ss_dssp C-CCEECTTTGGGSTTCCEEECCSSC-CSSCC--TTTTTCSSCCEEECCSSC-CCCCCTTSSSC-SSCCTTSCCCSEEEC
T ss_pred c-CceeChhhccCCCCCCEEECCCCc-CccCC--hhhccCCCcCEEECCCCc-CCccChhhcCC-cccccccccccceEe
Confidence 4 444444334556666677666663 55432 223456667777776664 44332211100 000112466777777
Q ss_pred ccCC
Q 041465 210 SDLE 213 (216)
Q Consensus 210 ~~lp 213 (216)
.+-|
T Consensus 301 ~~N~ 304 (330)
T 1xku_A 301 FSNP 304 (330)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 6644
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.43 E-value=1.1e-12 Score=106.34 Aligned_cols=179 Identities=16% Similarity=0.114 Sum_probs=105.9
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCc---ChHHHHhhCCCCcEEEEeecCCceeEeccCcccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACF---PIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLE 84 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~---p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~ 84 (216)
.++|++|++++++++.+.+..+ ..+++|++|++++|....+ |.. +. .+++|++|++++|... .+.+
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~-~~-~~~~L~~L~Ls~n~i~-~l~~------ 95 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVF--DKLTQLTKLSLSSNGLSFKGCCSQS-DF-GTTSLKYLDLSFNGVI-TMSS------ 95 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTT--TTCTTCSEEECCSSCCCEEEEEEHH-HH-SCSCCCEEECCSCSEE-EEEE------
T ss_pred CCCCCEEECCCCccCccCHhHh--hccccCCEEECCCCccCcccCcccc-cc-cccccCEEECCCCccc-cChh------
Confidence 5699999999988887554333 3578999999999976433 454 44 7999999999998765 4322
Q ss_pred ccccccccccEEecC-------------------------cccccceecccCcccCCcCCcccEEEEecCcCceeecCCC
Q 041465 85 KHVGKLAMIKTLELN-------------------------RHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSS 139 (216)
Q Consensus 85 ~~~~~l~~L~~L~l~-------------------------~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~ 139 (216)
.+..+++|++|+++ ++. +..+... ....+++|++|++++|.--....|..
T Consensus 96 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 96 -NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG---IFNGLSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp -EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTT---TTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred -hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchh---hcccCcCCCEEECCCCccccccchhH
Confidence 12234555555444 331 2211111 11245667777776664222122333
Q ss_pred cccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccC
Q 041465 140 SVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 140 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~l 212 (216)
+..+++|++|++++|. ++.+.+ .....+++|++|++++|. +..+.... -..+++|++|++.+.
T Consensus 171 ~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~-------~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQ-LEQLSP-TAFNSLSSLQVLNMSHNN-FFSLDTFP-------YKCLNSLQVLDYSLN 233 (306)
T ss_dssp CTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTSC-CSBCCSGG-------GTTCTTCCEEECTTS
T ss_pred HhhCcCCCEEECCCCC-cCCcCH-HHhcCCCCCCEEECCCCc-cCccChhh-------ccCcccCCEeECCCC
Confidence 5566777777777763 555432 234566777777777764 33221100 013678888888765
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.42 E-value=1.9e-12 Score=107.17 Aligned_cols=159 Identities=16% Similarity=0.238 Sum_probs=123.0
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|++|+++++.+..+.+..+ ..+++|++|++++|....+|.. .+..+++|++|++++|... .+ +.. ..+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-~l-~~~----~~~ 145 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSF--SSLGSLEHLDLSYNYLSNLSSS-WFKPLSSLTFLNLLGNPYK-TL-GET----SLF 145 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCSSCCHH-HHTTCTTCSEEECTTCCCS-SS-CSS----CSC
T ss_pred CCCCCEEECCCCccCccCHhhc--CCCCCCCEEECCCCcCCcCCHh-HhCCCccCCEEECCCCCCc-cc-Cch----hhh
Confidence 7899999999988887654443 3578999999999988888876 6678999999999998765 32 210 135
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
+.+++|+.|+++++..+..+....+ ..+++|++|++++|. ++...+..+..+++|++|+++++. ++.+. .....
T Consensus 146 ~~l~~L~~L~l~~n~~~~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~ 219 (353)
T 2z80_A 146 SHLTKLQILRVGNMDTFTKIQRKDF---AGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ-HILLL-EIFVD 219 (353)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTT---TTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC-STTHH-HHHHH
T ss_pred ccCCCCcEEECCCCccccccCHHHc---cCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc-cccch-hhhhh
Confidence 5799999999999877777644332 357899999999986 666656657788999999999886 55542 33445
Q ss_pred hccCCcEEEEecCc
Q 041465 168 TLVQLVTVSICGCS 181 (216)
Q Consensus 168 ~l~~L~~L~i~~C~ 181 (216)
.+++|++|++++|.
T Consensus 220 ~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 220 VTSSVECLELRDTD 233 (353)
T ss_dssp HTTTEEEEEEESCB
T ss_pred hcccccEEECCCCc
Confidence 68899999999985
No 26
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.42 E-value=1.8e-12 Score=104.82 Aligned_cols=182 Identities=16% Similarity=0.084 Sum_probs=88.6
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCc------
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEG------ 81 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~------ 81 (216)
+++++++++.+++++.+.. +.+++++.|++++|....++.. .+..+++|++|++++|... .+.+..+
T Consensus 9 l~~l~~l~~~~~~l~~ip~-----~~~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPP-----DLPKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGT 81 (290)
T ss_dssp STTCCEEECTTSCCSSCCS-----CCCTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCC-EEECCSCCTTCCE
T ss_pred cCCccEEECCCCCCCcCCC-----CCCCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccC-cccCCCCCCcCCE
Confidence 4566666666666655321 2235666666666655444433 3346666666666665544 3322100
Q ss_pred ---------cccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEe
Q 041465 82 ---------CLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAF 152 (216)
Q Consensus 82 ---------~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~ 152 (216)
..+..+..+++|+.|++++. +++.+....+ ..+++|+.|+++++. ++.+++..+..+++|++|+++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGAL---RGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTT---TTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECT
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHH---cCCCCCCEEECCCCC-CCccChhhcccccCCCEEECC
Confidence 00001223444555555443 2333321111 235566666666653 455544433455666666666
Q ss_pred cCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccC
Q 041465 153 GCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 153 ~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~l 212 (216)
++. ++.+++ .....+++|++|+++++. +..+... ....++|+.|.+.+-
T Consensus 157 ~N~-l~~l~~-~~~~~l~~L~~L~L~~N~-l~~ip~~--------~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 157 NNN-LTELPA-GLLNGLENLDTLLLQENS-LYTIPKG--------FFGSHLLPFAFLHGN 205 (290)
T ss_dssp TSC-CSCCCT-TTTTTCTTCCEEECCSSC-CCCCCTT--------TTTTCCCSEEECCSC
T ss_pred CCc-CCccCH-HHhcCcCCCCEEECCCCc-CCccChh--------hcccccCCeEEeCCC
Confidence 553 555432 233456666666666653 3333210 012446777776643
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.41 E-value=1.9e-12 Score=114.21 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=27.4
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecC
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFS 71 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~ 71 (216)
+++|++|+++++.+..+.+. + ..+++|++|++++|....++.. .+..+++|++|++++|.
T Consensus 277 l~~L~~L~l~~n~l~~lp~~-l--~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSG-L--VGLSTLKKLVLSANKFENLCQI-SASNFPSLTHLSIKGNT 336 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSS-C--CSCTTCCEEECTTCCCSBGGGG-CGGGCTTCSEEECCSCS
T ss_pred ccCCCEEeccCCccCCCChh-h--cccccCCEEECccCCcCcCchh-hhhccCcCCEEECCCCC
Confidence 34555555555544432211 1 2245555555555544333222 22355555555555554
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.41 E-value=2.1e-12 Score=110.05 Aligned_cols=62 Identities=16% Similarity=0.050 Sum_probs=35.3
Q ss_pred cCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 117 IFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 117 ~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
.+++|+.|++++|. ++.+.+..+..+++|++|++++|. ++.+.+ .....+++|++|++++|.
T Consensus 297 ~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~ 358 (455)
T 3v47_A 297 HFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNF-LGSIDS-RMFENLDKLEVLDLSYNH 358 (455)
T ss_dssp TCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECG-GGGTTCTTCCEEECCSSC
T ss_pred cCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCc-cCCcCh-hHhcCcccCCEEECCCCc
Confidence 35566666666554 444444434556677777776663 444432 334556677777776663
No 29
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=4.1e-14 Score=116.01 Aligned_cols=114 Identities=16% Similarity=0.054 Sum_probs=53.0
Q ss_pred ccccccEEecCcccccceecccCcccCCcCC-cccEEEEecCc-Ccee-ecCCCcccCCCccEEEEecCCCCcccCCchH
Q 041465 89 KLAMIKTLELNRHYHLKQLCKQDSKLGPIFQ-YLEILKVYHCQ-SLLI-LLPSSSVSFRNLTKLVAFGCKKLLHMVTSST 165 (216)
Q Consensus 89 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~-~L~~L~i~~c~-~L~~-l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~ 165 (216)
.+++|++|++++++++...... .....++ +|++|++++|. .++. -.+..+..+++|++|++++|..++.... ..
T Consensus 166 ~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~ 242 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QE 242 (336)
T ss_dssp HCTTCCEEECCCCTTCCHHHHH--HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-GG
T ss_pred cCCCCCEEcCCCCCCcChHHHH--HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-HH
Confidence 3455555555555444321000 0012345 66666666664 2321 1111123466666666666654443222 12
Q ss_pred HhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccC
Q 041465 166 AKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 166 ~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~l 212 (216)
...+++|++|++++|..+.... ...-..+++|+.|++.++
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~-------~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPET-------LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGG-------GGGGGGCTTCCEEECTTS
T ss_pred HhCCCCCCEeeCCCCCCCCHHH-------HHHHhcCCCCCEEeccCc
Confidence 3455666666666665221110 000113678888887765
No 30
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.41 E-value=1.2e-12 Score=106.75 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=36.1
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
+++|++|+++++.++.+. + ...+++|++|++++|....++. +..+++|++|++++|...
T Consensus 40 l~~L~~L~l~~~~i~~l~-~---~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-G---VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-T---GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCS
T ss_pred cCCcCEEEeeCCCccCch-h---hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCC
Confidence 567777777776665531 1 1346677777777776544443 236677777777766543
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.40 E-value=3.7e-12 Score=106.71 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=43.1
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
+++|++|+++++.+..+.+..+ ..+++|++|++++|....+|.. .++.+++|++|++++|...
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~ 130 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAF--AYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLS 130 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC
T ss_pred cccCcEEECCCCcccccChhhc--cCCCCcCEEECCCCCCCcCCHH-HhcCCCCCCEEECCCCccC
Confidence 5677777777766666544333 3467888888888876555544 4457888888888887654
No 32
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.40 E-value=2e-12 Score=104.57 Aligned_cols=153 Identities=16% Similarity=0.108 Sum_probs=102.8
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|++|+++++.+..+... ..+++|++|++++|....+|.. + ..+++|++|++++|... .+.+ ..+
T Consensus 54 l~~L~~L~L~~n~l~~~~~~----~~l~~L~~L~Ls~N~l~~l~~~-~-~~l~~L~~L~l~~N~l~-~l~~------~~~ 120 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQVD----GTLPVLGTLDLSHNQLQSLPLL-G-QTLPALTVLDVSFNRLT-SLPL------GAL 120 (290)
T ss_dssp CTTCCEEECTTSCCCEEECC----SCCTTCCEEECCSSCCSSCCCC-T-TTCTTCCEEECCSSCCC-CCCS------STT
T ss_pred CCCCCEEECCCCccCcccCC----CCCCcCCEEECCCCcCCcCchh-h-ccCCCCCEEECCCCcCc-ccCH------HHH
Confidence 34455555555444433211 2466777777777766666654 3 36777888888777655 3322 235
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
+.+++|+.|++++. ++..+..+.+ ..+++|+.|+++++. ++.+++..+..+++|++|+++++. ++.++. .+.
T Consensus 121 ~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~--~~~ 192 (290)
T 1p9a_G 121 RGLGELQELYLKGN-ELKTLPPGLL---TPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-LYTIPK--GFF 192 (290)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTTTT---TTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-CCCCCT--TTT
T ss_pred cCCCCCCEEECCCC-CCCccChhhc---ccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCc-CCccCh--hhc
Confidence 67899999999986 5666543322 357899999999874 777876644579999999999874 776642 344
Q ss_pred hccCCcEEEEecCc
Q 041465 168 TLVQLVTVSICGCS 181 (216)
Q Consensus 168 ~l~~L~~L~i~~C~ 181 (216)
...+|+.+.+.+.+
T Consensus 193 ~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 193 GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCCSEEECCSCC
T ss_pred ccccCCeEEeCCCC
Confidence 56789999998765
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.40 E-value=8.8e-13 Score=114.94 Aligned_cols=135 Identities=19% Similarity=0.172 Sum_probs=80.8
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|++|+++++.+..+.+..+ ..+++|++|++++|....++.. .+..+++|++|++++|... .+.+ ..+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~-~~~~------~~~ 94 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDL--RACANLQVLILKSSRINTIEGD-AFYSLGSLEHLDLSDNHLS-SLSS------SWF 94 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTT--SSCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCC-SCCH------HHH
T ss_pred CCCccEEECcCCccCccChhhh--hcCCcccEEECCCCCcCccChh-hccccccCCEEECCCCccC-ccCH------HHh
Confidence 4678888888877776654433 3467788888888866555543 3447788888888777655 3322 124
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCC
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCK 155 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~ 155 (216)
+.+++|++|+++++ .+..+... .....+++|++|++++|..+..+++..+..+++|++|++++|.
T Consensus 95 ~~l~~L~~L~Ls~n-~l~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 95 GPLSSLKYLNLMGN-PYQTLGVT--SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp TTCTTCCEEECTTC-CCSSSCSS--CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ccCCCCcEEECCCC-cccccchh--hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 45677777777665 23322110 1123456666777666665555544434556666666666654
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.39 E-value=2.6e-12 Score=113.57 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=48.6
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
+++|++|+++++.+..+.+..+ ..+++|++|++++|....+|.. .++.+++|++|++++|...
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~ 136 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAF--AYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLS 136 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC
T ss_pred CCCCcEEECCCCCCCCCChHHh--cCCCCCCEEECCCCcCCCCCHH-HHcCCCCCCEEEeeCCCCC
Confidence 5788888888888777654443 3578999999999977666655 5568999999999988665
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.39 E-value=1.4e-12 Score=115.05 Aligned_cols=182 Identities=17% Similarity=0.103 Sum_probs=95.5
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeec-----------------
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCF----------------- 70 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c----------------- 70 (216)
+++|++|+++++.+..+.........+++|++|++++|....+|.. + ..+++|++|++++|
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-F-MGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCC-C-TTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhh-c-cCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 5677777777665544310000012345555555555544334422 2 24455555555444
Q ss_pred --------CCceeEeccCccccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCccc
Q 041465 71 --------SFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVS 142 (216)
Q Consensus 71 --------~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~ 142 (216)
... ...+ ..++.+++|+.|+++++.--..+... ....+++|+.|++++|. ++...+..+..
T Consensus 427 ~~L~l~~n~l~-~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 495 (606)
T 3vq2_A 427 LYLDISYTNTK-IDFD------GIFLGLTSLNTLKMAGNSFKDNTLSN---VFANTTNLTFLDLSKCQ-LEQISWGVFDT 495 (606)
T ss_dssp CEEECTTSCCE-ECCT------TTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSC-CCEECTTTTTT
T ss_pred CEEECcCCCCC-ccch------hhhcCCCCCCEEECCCCcCCCcchHH---hhccCCCCCEEECCCCc-CCccChhhhcc
Confidence 333 2211 12344566666666655211111111 12356778888887774 55555554566
Q ss_pred CCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecc-cccceecccCC
Q 041465 143 FRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFC-KLKALILSDLE 213 (216)
Q Consensus 143 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~-~L~~L~l~~lp 213 (216)
+++|++|++++|. ++.+.+ .....+++|++|++++|. +..+... - ..+| +|++|++.+.|
T Consensus 496 l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~p~~-~-------~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 496 LHRLQLLNMSHNN-LLFLDS-SHYNQLYSLSTLDCSFNR-IETSKGI-L-------QHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CTTCCEEECCSSC-CSCEEG-GGTTTCTTCCEEECTTSC-CCCEESC-G-------GGSCTTCCEEECCSCC
T ss_pred cccCCEEECCCCc-CCCcCH-HHccCCCcCCEEECCCCc-CcccCHh-H-------hhhcccCcEEEccCCC
Confidence 7788888888774 555433 344567778888888775 5444311 0 1355 48888887654
No 36
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.38 E-value=5.1e-12 Score=100.97 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=104.2
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
.++|++|+++++++..+.+..+ ..+++|++|++++|....++.. .+..+++|++|++++|... .+.+ ..+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-~~~~------~~~ 96 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQ-SLAL------GAF 96 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTT--TTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCC-EECT------TTT
T ss_pred CCCccEEECCCCcccccCHhHh--ccccCCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCccC-ccCh------hhh
Confidence 3579999999988887654333 3588999999999987677654 4558999999999998766 4433 135
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeec-CCCcccCCCccEEEEecCCCCcccCCchHH
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILL-PSSSVSFRNLTKLVAFGCKKLLHMVTSSTA 166 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~-~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~ 166 (216)
..+++|++|+++++ ++..+.... ...+++|++|+++++. ++.+. |..+..+++|++|++++|. ++.+.+ ...
T Consensus 97 ~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~ 169 (276)
T 2z62_A 97 SGLSSLQKLVAVET-NLASLENFP---IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC-TDL 169 (276)
T ss_dssp TTCTTCCEEECTTS-CCCCSTTCC---CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECG-GGG
T ss_pred cCCccccEEECCCC-CccccCchh---cccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcCCH-HHh
Confidence 57888999988876 344432211 2357788888888765 44321 4435677888888888874 555432 222
Q ss_pred hhccCCc----EEEEecC
Q 041465 167 KTLVQLV----TVSICGC 180 (216)
Q Consensus 167 ~~l~~L~----~L~i~~C 180 (216)
..+.+|+ +|+++++
T Consensus 170 ~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp HHHHTCTTCCEEEECCSS
T ss_pred hhhhhccccceeeecCCC
Confidence 3334444 5555554
No 37
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=4.1e-12 Score=96.75 Aligned_cols=149 Identities=9% Similarity=0.084 Sum_probs=64.6
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|++|+++++.+..+. + ...+++|++|++++|....++ . +..+++|++|++++|... ...+ ..+
T Consensus 43 l~~L~~L~l~~n~i~~l~-~---l~~l~~L~~L~l~~n~~~~~~-~--l~~l~~L~~L~l~~n~l~-~~~~------~~l 108 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-G---IEYAHNIKDLTINNIHATNYN-P--ISGLSNLERLRIMGKDVT-SDKI------PNL 108 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-T---GGGCTTCSEEEEESCCCSCCG-G--GTTCTTCCEEEEECTTCB-GGGS------CCC
T ss_pred cCCccEEeccCCCccChH-H---HhcCCCCCEEEccCCCCCcch-h--hhcCCCCCEEEeECCccC-cccC------hhh
Confidence 445555555555444322 1 123455555555555333332 1 124555555555555433 1111 113
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
+.+++|+.|+++++ .+...... ....+++|+.|++++|..++.++ . +..+++|++|++++|. ++.+. ...
T Consensus 109 ~~l~~L~~L~Ls~n-~i~~~~~~---~l~~l~~L~~L~L~~n~~i~~~~-~-l~~l~~L~~L~l~~n~-i~~~~---~l~ 178 (197)
T 4ezg_A 109 SGLTSLTLLDISHS-AHDDSILT---KINTLPKVNSIDLSYNGAITDIM-P-LKTLPELKSLNIQFDG-VHDYR---GIE 178 (197)
T ss_dssp TTCTTCCEEECCSS-BCBGGGHH---HHTTCSSCCEEECCSCTBCCCCG-G-GGGCSSCCEEECTTBC-CCCCT---TGG
T ss_pred cCCCCCCEEEecCC-ccCcHhHH---HHhhCCCCCEEEccCCCCccccH-h-hcCCCCCCEEECCCCC-CcChH---Hhc
Confidence 34555555555554 12211010 11234555555555554344432 1 3445555555555543 33321 223
Q ss_pred hccCCcEEEEecC
Q 041465 168 TLVQLVTVSICGC 180 (216)
Q Consensus 168 ~l~~L~~L~i~~C 180 (216)
.+++|++|++++.
T Consensus 179 ~l~~L~~L~l~~N 191 (197)
T 4ezg_A 179 DFPKLNQLYAFSQ 191 (197)
T ss_dssp GCSSCCEEEECBC
T ss_pred cCCCCCEEEeeCc
Confidence 4455555555544
No 38
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.38 E-value=4.9e-14 Score=115.56 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=23.3
Q ss_pred cccceEEcccccccccccCCCCccccCCccEEEEecCCCC-C-cChHHHHhhCCCCcEEEEeec
Q 041465 9 PNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSA-C-FPIWNVLERFHNLEKLILVCF 70 (216)
Q Consensus 9 p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~-~-~p~~~~~~~l~~L~~L~i~~c 70 (216)
++++.|++.++.+...++.. ..+++|++|++++|... . +|. .+..+++|++|++++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~---~~~~~L~~L~L~~~~l~~~~~~~--~~~~~~~L~~L~L~~~ 128 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEH---FSPFRVQHMDLSNSVIEVSTLHG--ILSQCSKLQNLSLEGL 128 (336)
T ss_dssp TTCSEEECTTCEECSCCCSC---CCCBCCCEEECTTCEECHHHHHH--HHTTBCCCSEEECTTC
T ss_pred ccceEEEcCCccccccchhh---ccCCCCCEEEccCCCcCHHHHHH--HHhhCCCCCEEeCcCc
Confidence 44455555444443322211 12444555555544321 1 222 2234455555555444
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.38 E-value=4.1e-12 Score=104.59 Aligned_cols=177 Identities=13% Similarity=0.112 Sum_probs=99.1
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCc------
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEG------ 81 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~------ 81 (216)
+++|++|+++++.+..+.+ ...+++|+.|++++|....++. ...+++|++|++++|... .+.+...
T Consensus 154 l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~-~~~~~~~~~~L~~ 225 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQIT-DITPVANMTRLNS 225 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCC-CCGGGGGCTTCCE
T ss_pred CCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCccccccc---ccCCCccceeecccCCCC-CCchhhcCCcCCE
Confidence 5678888887766554321 2346777777777776544442 235666666666665433 2111000
Q ss_pred -----c---ccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEec
Q 041465 82 -----C---LEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFG 153 (216)
Q Consensus 82 -----~---~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~ 153 (216)
. ....+..+++|+.|+++++ .+..+ .....+++|+.|++++|. ++.+ +. ...+++|++|++++
T Consensus 226 L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~-----~~~~~l~~L~~L~l~~n~-l~~~-~~-~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 226 LKIGNNKITDLSPLANLSQLTWLEIGTN-QISDI-----NAVKDLTKLKMLNVGSNQ-ISDI-SV-LNNLSQLNSLFLNN 296 (347)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCC-----GGGTTCTTCCEEECCSSC-CCCC-GG-GGGCTTCSEEECCS
T ss_pred EEccCCccCCCcchhcCCCCCEEECCCC-ccCCC-----hhHhcCCCcCEEEccCCc-cCCC-hh-hcCCCCCCEEECcC
Confidence 0 0001234556666666554 23332 112346777777777763 4444 22 45677788888877
Q ss_pred CCCCcccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccCC
Q 041465 154 CKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDLE 213 (216)
Q Consensus 154 C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~lp 213 (216)
|. ++... +.....+++|++|++++|+ +..+.. ...+++|++|++.+.+
T Consensus 297 n~-l~~~~-~~~l~~l~~L~~L~L~~n~-l~~~~~---------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 297 NQ-LGNED-MEVIGGLTNLTTLFLSQNH-ITDIRP---------LASLSKMDSADFANQV 344 (347)
T ss_dssp SC-CCGGG-HHHHHTCTTCSEEECCSSS-CCCCGG---------GGGCTTCSEESSSCC-
T ss_pred Cc-CCCcC-hhHhhccccCCEEEccCCc-cccccC---------hhhhhccceeehhhhc
Confidence 74 44433 2344567788888888876 444321 1147889999888765
No 40
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.38 E-value=1.2e-12 Score=104.69 Aligned_cols=157 Identities=14% Similarity=0.179 Sum_probs=95.7
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|++|+++++.+..+.+..+ ..+++|++|++++|....++.. .+..+++|++|++++|... .+.+ ..+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~~~~------~~~ 120 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAY--QSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLA-SLEN------FPI 120 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTT--TTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTSCCC-CSTT------CCC
T ss_pred ccCCcEEECCCCcCCccCHHHc--cCCcCCCEEECCCCccCccChh-hhcCCccccEEECCCCCcc-ccCc------hhc
Confidence 6899999999988877654433 3478999999999987666644 4458899999999888655 3222 124
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCcc----EEEEecCCCCcccCCc
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLT----KLVAFGCKKLLHMVTS 163 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~----~L~i~~C~~L~~l~~~ 163 (216)
+.+++|++|++++. .+..+.. ......+++|+.|++++|. ++.+++..+..+++|+ +|+++++. ++.+.+.
T Consensus 121 ~~l~~L~~L~l~~n-~l~~~~l--~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~ 195 (276)
T 2z62_A 121 GHLKTLKELNVAHN-LIQSFKL--PEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPG 195 (276)
T ss_dssp TTCTTCCEEECCSS-CCCCCCC--CGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSC-CCEECTT
T ss_pred ccCCCCCEEECcCC-ccceecC--chhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCCc-ccccCcc
Confidence 56788888888765 3333210 1112346777777777764 4444333233344444 56666553 4443221
Q ss_pred hHHhhccCCcEEEEecCc
Q 041465 164 STAKTLVQLVTVSICGCS 181 (216)
Q Consensus 164 ~~~~~l~~L~~L~i~~C~ 181 (216)
.....+|++|+++++.
T Consensus 196 --~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 196 --AFKEIRLKELALDTNQ 211 (276)
T ss_dssp --SSCSCCEEEEECCSSC
T ss_pred --ccCCCcccEEECCCCc
Confidence 1122356666666654
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.38 E-value=2.3e-12 Score=105.16 Aligned_cols=183 Identities=12% Similarity=0.093 Sum_probs=113.4
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCC-CCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNS-ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKH 86 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~-~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~ 86 (216)
+++|++|+++++.+....+..+ ..+++|++|++++|.. ..+|.. + ..+++|++|++++|... ..+|. .
T Consensus 100 l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~-~-~~l~~L~~L~L~~N~l~-~~~p~------~ 168 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSGAIPDFL--SQIKTLVTLDFSYNALSGTLPPS-I-SSLPNLVGITFDGNRIS-GAIPD------S 168 (313)
T ss_dssp CTTCSEEEEEEECCEEECCGGG--GGCTTCCEEECCSSEEESCCCGG-G-GGCTTCCEEECCSSCCE-EECCG------G
T ss_pred CCCCCEEECcCCeeCCcCCHHH--hCCCCCCEEeCCCCccCCcCChH-H-hcCCCCCeEECcCCccc-CcCCH------H
Confidence 6889999999988774443322 3578999999999965 467765 4 48899999999888765 34441 2
Q ss_pred ccccc-cccEEecCcccc------------cceecccC-------cccCCcCCcccEEEEecCcCceeecCCCcccCCCc
Q 041465 87 VGKLA-MIKTLELNRHYH------------LKQLCKQD-------SKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNL 146 (216)
Q Consensus 87 ~~~l~-~L~~L~l~~~~~------------L~~l~~~~-------~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L 146 (216)
++.++ +|+.|++++..- |+.+...+ ......+++|+.|+++++. ++...+. +..+++|
T Consensus 169 l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~l~~L 246 (313)
T 1ogq_A 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGK-VGLSKNL 246 (313)
T ss_dssp GGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGGG-CCCCTTC
T ss_pred HhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeecCc-ccccCCC
Confidence 33344 566665554310 11111110 1111346777777777765 3333333 4567888
Q ss_pred cEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccCCC
Q 041465 147 TKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDLES 214 (216)
Q Consensus 147 ~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~lp~ 214 (216)
++|++++|. ++...+ .....+++|++|+++++.--..+.. . ..+++|+.|++.+-|.
T Consensus 247 ~~L~Ls~N~-l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~-~--------~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 247 NGLDLRNNR-IYGTLP-QGLTQLKFLHSLNVSFNNLCGEIPQ-G--------GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CEEECCSSC-CEECCC-GGGGGCTTCCEEECCSSEEEEECCC-S--------TTGGGSCGGGTCSSSE
T ss_pred CEEECcCCc-ccCcCC-hHHhcCcCCCEEECcCCcccccCCC-C--------ccccccChHHhcCCCC
Confidence 888888775 554333 3456788888888888863333321 1 1478888888887664
No 42
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.37 E-value=6.7e-12 Score=103.89 Aligned_cols=164 Identities=14% Similarity=0.125 Sum_probs=90.3
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCC-CCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNS-ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKH 86 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~-~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~ 86 (216)
.+++++|++++++++.+.++.+ ..+++|++|++++|.. ..+|.+ .+..+++|+++.+.+++.+..+.+. .
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f--~~l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~l~~~l~~~~N~l~~l~~~------~ 99 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAF--SGFGDLEKIEISQNDVLEVIEAD-VFSNLPKLHEIRIEKANNLLYINPE------A 99 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSS--TTCTTCCEEEEECCTTCCEECTT-SBCSCTTCCEEEEEEETTCCEECTT------S
T ss_pred CCCCCEEEccCCcCCCcCHHHH--cCCCCCCEEECcCCCCCCccChh-HhhcchhhhhhhcccCCcccccCch------h
Confidence 4689999999988888765554 3478999999999964 556655 4456777776655544444244331 2
Q ss_pred ccccccccEEecCcc------------------------cccceecccCcccCCcCCcccEEEEecCcCceeecCCCccc
Q 041465 87 VGKLAMIKTLELNRH------------------------YHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVS 142 (216)
Q Consensus 87 ~~~l~~L~~L~l~~~------------------------~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~ 142 (216)
++.+++|+.|++++. .++..+....+. .....++.|+++++ +++.+++. +..
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~--~~~~~l~~L~L~~N-~i~~i~~~-~f~ 175 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV--GLSFESVILWLNKN-GIQEIHNS-AFN 175 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSST--TSBSSCEEEECCSS-CCCEECTT-SST
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchh--hcchhhhhhccccc-cccCCChh-hcc
Confidence 334555555554432 222222211111 01123445555443 24444433 334
Q ss_pred CCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhh
Q 041465 143 FRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEV 186 (216)
Q Consensus 143 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i 186 (216)
.++|+++.+.++..++.+.. .....+++|++|+++++. ++.+
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~-l~~l 217 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTR-IHSL 217 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSC-CCCC
T ss_pred ccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCC-cCcc
Confidence 45566666666666665432 233556666666666663 4444
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.37 E-value=5.6e-12 Score=111.19 Aligned_cols=86 Identities=23% Similarity=0.246 Sum_probs=58.7
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCC-CCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNS-ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKH 86 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~-~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~ 86 (216)
+++|++|+++++.+..+.+..+ ..+++|++|++++|.. ..+|.. .+..+++|++|++++|... .+... ...
T Consensus 300 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~-~~~~~----~~~ 371 (606)
T 3t6q_A 300 LSTLKKLVLSANKFENLCQISA--SNFPSLTHLSIKGNTKRLELGTG-CLENLENLRELDLSHDDIE-TSDCC----NLQ 371 (606)
T ss_dssp CTTCCEEECTTCCCSBGGGGCG--GGCTTCSEEECCSCSSCCBCCSS-TTTTCTTCCEEECCSSCCC-EEEES----TTT
T ss_pred cccCCEEECccCCcCcCchhhh--hccCcCCEEECCCCCcccccchh-hhhccCcCCEEECCCCccc-cccCc----chh
Confidence 6899999999988776544332 3578999999999864 456654 4558899999999888766 33210 012
Q ss_pred ccccccccEEecCcc
Q 041465 87 VGKLAMIKTLELNRH 101 (216)
Q Consensus 87 ~~~l~~L~~L~l~~~ 101 (216)
++.+++|++|+++++
T Consensus 372 ~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYN 386 (606)
T ss_dssp TTTCTTCCEEECCSC
T ss_pred cccCCCCCEEECCCC
Confidence 345667777766654
No 44
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.37 E-value=9.1e-13 Score=107.41 Aligned_cols=163 Identities=15% Similarity=0.100 Sum_probs=91.9
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhC-----CCCcEEEEeecCCceeEeccCcc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERF-----HNLEKLILVCFSFNEEVFSEEGC 82 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l-----~~L~~L~i~~c~~~e~~~~~~~~ 82 (216)
+++|++|+++++.+....+..+-...+++|++|++++|....+|.. + ..+ ++|++|++++|... .+.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~-~~l~~~~~~~L~~L~L~~N~l~-~~~~---- 166 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-L-AELQQWLKPGLKVLSIAQAHSL-NFSC---- 166 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-H-HHHHTTCCTTCCEEEEESCSCC-CCCT----
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-H-HHHHHhhcCCCcEEEeeCCCCc-cchH----
Confidence 7899999999988775443322113578999999999976555754 4 355 89999999998766 4432
Q ss_pred ccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceee---cCCCcccCCCccEEEEecCCCCcc
Q 041465 83 LEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLIL---LPSSSVSFRNLTKLVAFGCKKLLH 159 (216)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l---~~~~~~~l~~L~~L~i~~C~~L~~ 159 (216)
..++.+++|+.|++++..-...+..........+++|++|++++|. ++.+ +......+++|++|+++++. ++.
T Consensus 167 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 242 (312)
T 1wwl_A 167 --EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRD 242 (312)
T ss_dssp --TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCS
T ss_pred --HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCc
Confidence 2355678888888877642211100000000245666666666653 3311 11101234566666666553 444
Q ss_pred cCCchHHhhccCCcEEEEecCc
Q 041465 160 MVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 160 l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
..+......+++|++|++++|.
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTSC
T ss_pred ccchhhhhhcCCCCEEECCCCc
Confidence 3221222334566666666553
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.37 E-value=6.4e-12 Score=106.99 Aligned_cols=86 Identities=12% Similarity=-0.074 Sum_probs=62.5
Q ss_pred cCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCcccccc
Q 041465 117 IFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEK 196 (216)
Q Consensus 117 ~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~ 196 (216)
.+++|+.|++++|. ++.+.+..+..+++|++|++++|. ++.+.+ .....+++|++|++++|. +..+....-
T Consensus 321 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~----- 391 (455)
T 3v47_A 321 GLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNH-IRALGD-QSFLGLPNLKELALDTNQ-LKSVPDGIF----- 391 (455)
T ss_dssp TCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSC-CSCCCTTTT-----
T ss_pred CcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCCc-ccccCh-hhccccccccEEECCCCc-cccCCHhHh-----
Confidence 57899999999984 666666546678999999999985 666543 345678999999999985 554432111
Q ss_pred ceeecccccceecccCC
Q 041465 197 EEIVFCKLKALILSDLE 213 (216)
Q Consensus 197 ~~~~~~~L~~L~l~~lp 213 (216)
..+++|++|++.+.|
T Consensus 392 --~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 392 --DRLTSLQKIWLHTNP 406 (455)
T ss_dssp --TTCTTCCEEECCSSC
T ss_pred --ccCCcccEEEccCCC
Confidence 146788888887653
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.36 E-value=9.4e-12 Score=102.08 Aligned_cols=166 Identities=17% Similarity=0.132 Sum_probs=84.0
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccC-------
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEE------- 80 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~------- 80 (216)
+++|++|+++++++..+.+..+ ..+++|++|++++|....++.. .+..+++|++|++++|... .+.+..
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L 128 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDF--KGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYISKNHLV-EIPPNLPSSLVEL 128 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEECCSSCCC-SCCSSCCTTCCEE
T ss_pred CCCCeEEECCCCcCCccCHhHh--hCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEECCCCcCC-ccCccccccCCEE
Confidence 4567777777766665443332 2356677777776655444322 2346666666666665443 221100
Q ss_pred --------ccccccccccccccEEecCccc-----------------------------------ccceecccCc-----
Q 041465 81 --------GCLEKHVGKLAMIKTLELNRHY-----------------------------------HLKQLCKQDS----- 112 (216)
Q Consensus 81 --------~~~~~~~~~l~~L~~L~l~~~~-----------------------------------~L~~l~~~~~----- 112 (216)
+.....++.+++|+.|++++.. +|+.+...+.
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI 208 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc
Confidence 0001113345666666655431 1111111000
Q ss_pred --ccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 113 --KLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 113 --~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
.....+++|+.|++++|. ++.+++..+..+++|++|++++|. ++.++ .....+++|++|+++++.
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp--~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNK-LSRVP--AGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSC-CCBCC--TTGGGCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCc-CeecC--hhhhcCccCCEEECCCCC
Confidence 011234556666665543 444444334566777777777763 65543 234567777777777764
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.35 E-value=2.1e-12 Score=105.44 Aligned_cols=181 Identities=17% Similarity=0.071 Sum_probs=91.3
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcc-----
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGC----- 82 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~----- 82 (216)
+++|++|+++++.+..+.+..+ ..+++|++|++++|.....+. +..+++|++|++++|... .+.+....
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~-~l~~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADL--APFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHH--TTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEE-EEEECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHh--hCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccc-cccCCCCcCEEEC
Confidence 4678888888877766433222 246788888888886533332 237788888888777544 32210000
Q ss_pred -----ccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCc-ccCCCccEEEEecCCC
Q 041465 83 -----LEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSS-VSFRNLTKLVAFGCKK 156 (216)
Q Consensus 83 -----~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~-~~l~~L~~L~i~~C~~ 156 (216)
.......+++|+.|+++++ ++..+....+ ..+++|+.|++++|. ++.+.+... ..+++|++|++++|.
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N-~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~- 180 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDE---GCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF- 180 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSS-CCCSGGGBCT---GGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-
T ss_pred CCCccCCcCccccCCCCEEECCCC-CCCCccchhh---hccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-
Confidence 0000112444455544443 2222211111 235566666666653 333322212 245666666666653
Q ss_pred CcccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccC
Q 041465 157 LLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 157 L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~l 212 (216)
++.+.. ...+++|++|++++|. +..+... -..+++|++|++.+.
T Consensus 181 l~~~~~---~~~l~~L~~L~Ls~N~-l~~l~~~--------~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 181 IYDVKG---QVVFAKLKTLDLSSNK-LAFMGPE--------FQSAAGVTWISLRNN 224 (317)
T ss_dssp CCEEEC---CCCCTTCCEEECCSSC-CCEECGG--------GGGGTTCSEEECTTS
T ss_pred Cccccc---ccccccCCEEECCCCc-CCcchhh--------hcccCcccEEECcCC
Confidence 444421 1235666666666663 3333210 113567777777654
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.35 E-value=1.6e-11 Score=106.96 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=119.2
Q ss_pred cccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeE-eccCccccc
Q 041465 7 IVPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEV-FSEEGCLEK 85 (216)
Q Consensus 7 ~~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~-~~~~~~~~~ 85 (216)
.+++|++|+++++.+..+.+..+ ..+++|++|++++|....+|.. .+..+++|++|++++|... .+ .+ .
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~-~~~~~------~ 117 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAF--YSLGSLEHLDLSDNHLSSLSSS-WFGPLSSLKYLNLMGNPYQ-TLGVT------S 117 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTSCCCSCCHH-HHTTCTTCCEEECTTCCCS-SSCSS------C
T ss_pred cCCcccEEECCCCCcCccChhhc--cccccCCEEECCCCccCccCHH-HhccCCCCcEEECCCCccc-ccchh------h
Confidence 37899999999998887665444 3589999999999988777765 5679999999999998765 22 11 1
Q ss_pred cccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchH
Q 041465 86 HVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSST 165 (216)
Q Consensus 86 ~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~ 165 (216)
.++.+++|++|+++++..+..+....+ ..+++|++|++++|. ++...|..+..+++|++|+++++. +..+ +...
T Consensus 118 ~~~~l~~L~~L~L~~n~~~~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-~~~~-~~~~ 191 (549)
T 2z81_A 118 LFPNLTNLQTLRIGNVETFSEIRRIDF---AGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLSE-SAFL-LEIF 191 (549)
T ss_dssp SCTTCTTCCEEEEEESSSCCEECTTTT---TTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSB-STTH-HHHH
T ss_pred hhhccCCccEEECCCCccccccCHhhh---hcccccCeeeccCCc-ccccChhhhhccccCceEecccCc-cccc-chhh
Confidence 356799999999999876666643322 358899999999986 555555556778899999998875 3332 2233
Q ss_pred HhhccCCcEEEEecCc
Q 041465 166 AKTLVQLVTVSICGCS 181 (216)
Q Consensus 166 ~~~l~~L~~L~i~~C~ 181 (216)
...+++|++|+++++.
T Consensus 192 ~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 192 ADILSSVRYLELRDTN 207 (549)
T ss_dssp HHSTTTBSEEEEESCB
T ss_pred HhhcccccEEEccCCc
Confidence 4567889999998875
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=3e-12 Score=110.73 Aligned_cols=182 Identities=16% Similarity=0.066 Sum_probs=101.5
Q ss_pred cccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcc----
Q 041465 7 IVPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGC---- 82 (216)
Q Consensus 7 ~~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~---- 82 (216)
.+++|++|+++++.+..+.+..+ ..+++|++|++++|.....+. +..+++|++|++++|... .+.+....
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~-~l~~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADL--APFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ-ELLVGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGG--TTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEE-EEEECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHH--hCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCC-CCCCCCCcCEEE
Confidence 35689999999988877654433 357899999999997643332 238899999999888654 33221000
Q ss_pred ------ccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcc-cCCCccEEEEecCC
Q 041465 83 ------LEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSV-SFRNLTKLVAFGCK 155 (216)
Q Consensus 83 ------~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~-~l~~L~~L~i~~C~ 155 (216)
.......+++|+.|+++++ .+..+.... ...+++|+.|++++|. ++...|..+. .+++|++|++++|.
T Consensus 106 L~~N~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 106 AANNNISRVSCSRGQGKKNIYLANN-KITMLRDLD---EGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CCSSCCCCEEECCCSSCEEEECCSS-CCCSGGGBC---GGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CcCCcCCCCCccccCCCCEEECCCC-CCCCCCchh---hcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCc
Confidence 0000113455555555544 232221111 1235667777776654 4433333232 46677777777664
Q ss_pred CCcccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccC
Q 041465 156 KLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 156 ~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~l 212 (216)
++.+.+ ...+++|++|++++|. +..+... -..+++|+.|++.+.
T Consensus 181 -l~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~~--------~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 181 -IYDVKG---QVVFAKLKTLDLSSNK-LAFMGPE--------FQSAAGVTWISLRNN 224 (487)
T ss_dssp -CCEEEC---CCCCTTCCEEECCSSC-CCEECGG--------GGGGTTCSEEECTTS
T ss_pred -cccccc---cccCCCCCEEECCCCC-CCCCCHh--------HcCCCCccEEEecCC
Confidence 554421 1236677777777664 3333211 114677888877653
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.34 E-value=8.8e-13 Score=116.30 Aligned_cols=184 Identities=17% Similarity=0.004 Sum_probs=107.8
Q ss_pred cccccceEEccccc-ccccccCCCCccccCCccEEEEecCCCCCc---ChHHHHhhCCCCcEEEEeecCCceeEeccCc-
Q 041465 7 IVPNLKELSLSGKD-VKLILQADFPQHFFGSLRELEIAEDNSACF---PIWNVLERFHNLEKLILVCFSFNEEVFSEEG- 81 (216)
Q Consensus 7 ~~p~Le~L~l~~~~-l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~---p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~- 81 (216)
.+++|++|+++++. ...+ +...+++|++|++++|..... |.. ...+++|++|++++|... .+....+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n~l~~~~~~~~~--~~~~~~L~~L~L~~n~l~-~~~~~~~~ 397 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF-----KKVALPSLSYLDLSRNALSFSGCCSYS--DLGTNSLRHLDLSFNGAI-IMSANFMG 397 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC-----CCCCCTTCCEEECCSSCEEEEEECCHH--HHCCSCCCEEECCSCSEE-EECCCCTT
T ss_pred CCCccceeeccCCcCccch-----hhccCCCCCEEECcCCccCCCcchhhh--hccCCcccEeECCCCccc-cchhhccC
Confidence 47899999999963 3332 224589999999999975433 554 458999999999998755 3321000
Q ss_pred ----------------ccc-ccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCC
Q 041465 82 ----------------CLE-KHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFR 144 (216)
Q Consensus 82 ----------------~~~-~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~ 144 (216)
... ..++.+++|+.|+++++. +...... ....+++|++|++++|.--....|..+..++
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDG---IFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC-CEECCTT---TTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC-CCccchh---hhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 000 112234445555554442 2221111 1134667777777776533222344355677
Q ss_pred CccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccC
Q 041465 145 NLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 145 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~l 212 (216)
+|++|++++|. ++.+.+ .....+++|++|++++|. +..+.+..- ..+++|++|++.+.
T Consensus 474 ~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-------~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 474 NLTFLDLSKCQ-LEQISW-GVFDTLHRLQLLNMSHNN-LLFLDSSHY-------NQLYSLSTLDCSFN 531 (606)
T ss_dssp TCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CSCEEGGGT-------TTCTTCCEEECTTS
T ss_pred CCCEEECCCCc-CCccCh-hhhcccccCCEEECCCCc-CCCcCHHHc-------cCCCcCCEEECCCC
Confidence 78888887773 555433 344567788888888774 433321111 13677888887765
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.34 E-value=2.7e-12 Score=104.74 Aligned_cols=153 Identities=11% Similarity=0.130 Sum_probs=93.6
Q ss_pred ccccceEEccc-ccccccccCCCCccccCCccEEEEecCCCC-CcChHHHHhhCCCCcEEEEeecCCceeEeccCccccc
Q 041465 8 VPNLKELSLSG-KDVKLILQADFPQHFFGSLRELEIAEDNSA-CFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEK 85 (216)
Q Consensus 8 ~p~Le~L~l~~-~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~-~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~ 85 (216)
+++|++|++++ +++....+..+ ..+++|++|++++|... .+|.. + ..+++|++|++++|... ...| .
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~-~-~~l~~L~~L~Ls~N~l~-~~~p------~ 143 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNVSGAIPDF-L-SQIKTLVTLDFSYNALS-GTLP------P 143 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEECCEEECCGG-G-GGCTTCCEEECCSSEEE-SCCC------G
T ss_pred CCCCCeeeCCCCCcccccCChhH--hcCCCCCEEECcCCeeCCcCCHH-H-hCCCCCCEEeCCCCccC-CcCC------h
Confidence 78999999995 77765443333 35899999999999874 77765 4 58999999999998655 3333 2
Q ss_pred cccccccccEEecCcccccc-eecccCcccCCcCC-cccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCc
Q 041465 86 HVGKLAMIKTLELNRHYHLK-QLCKQDSKLGPIFQ-YLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTS 163 (216)
Q Consensus 86 ~~~~l~~L~~L~l~~~~~L~-~l~~~~~~~~~~l~-~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~ 163 (216)
.++.+++|++|+++++. +. .+. .. ...++ +|+.|+++++. ++...|..+..++ |++|++++|. ++...+
T Consensus 144 ~~~~l~~L~~L~L~~N~-l~~~~p-~~---l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~- 214 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNR-ISGAIP-DS---YGSFSKLFTSMTISRNR-LTGKIPPTFANLN-LAFVDLSRNM-LEGDAS- 214 (313)
T ss_dssp GGGGCTTCCEEECCSSC-CEEECC-GG---GGCCCTTCCEEECCSSE-EEEECCGGGGGCC-CSEEECCSSE-EEECCG-
T ss_pred HHhcCCCCCeEECcCCc-ccCcCC-HH---HhhhhhcCcEEECcCCe-eeccCChHHhCCc-ccEEECcCCc-ccCcCC-
Confidence 35679999999998863 33 221 11 11333 66777776654 3322233233333 5555555543 333221
Q ss_pred hHHhhccCCcEEEEecC
Q 041465 164 STAKTLVQLVTVSICGC 180 (216)
Q Consensus 164 ~~~~~l~~L~~L~i~~C 180 (216)
.....+++|++|+++++
T Consensus 215 ~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 215 VLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp GGCCTTSCCSEEECCSS
T ss_pred HHHhcCCCCCEEECCCC
Confidence 22234455555555544
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.34 E-value=8.8e-12 Score=102.58 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=33.9
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
+++|++|++.++.+..+. + ...+++|++|++++|....+|. +..+++|++|++++|...
T Consensus 43 l~~L~~L~l~~~~i~~~~-~---~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~ 101 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ-G---IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKIT 101 (347)
T ss_dssp HTTCSEEECCSSCCCCCT-T---GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred cccccEEEEeCCccccch-h---hhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCccc
Confidence 566777777765555431 1 1346667777776665544442 236666666666666443
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.34 E-value=8.3e-13 Score=115.42 Aligned_cols=185 Identities=17% Similarity=0.079 Sum_probs=109.2
Q ss_pred cccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCc---ChHHHHhhCCCCcEEEEeecCCceeEeccCc--
Q 041465 7 IVPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACF---PIWNVLERFHNLEKLILVCFSFNEEVFSEEG-- 81 (216)
Q Consensus 7 ~~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~---p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~-- 81 (216)
.+++|++|++.++...... +...+++|++|++++|..... |.. + ..+++|++|++++|... .+.+..+
T Consensus 323 ~l~~L~~L~l~~n~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~-~-~~~~~L~~L~l~~n~l~-~~~~~~~~l 395 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAF----SEVDLPSLEFLDLSRNGLSFKGCCSQS-D-FGTTSLKYLDLSFNGVI-TMSSNFLGL 395 (570)
T ss_dssp BCSSCCEEEEESCBSCCBC----CCCBCTTCCEEECCSSCCBEEEEEEHH-H-HTCSCCCEEECCSCSEE-EEEEEEETC
T ss_pred cccccCEEeCcCCcccccc----ccccCCCCCEEeCcCCccCcccccccc-c-cccCccCEEECCCCccc-ccccccccc
Confidence 4788888888886654422 224578888888888865433 443 3 47888888888887654 3322000
Q ss_pred ---------------ccc-ccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCce-eecCCCcccCC
Q 041465 82 ---------------CLE-KHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLL-ILLPSSSVSFR 144 (216)
Q Consensus 82 ---------------~~~-~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~-~l~~~~~~~l~ 144 (216)
... ..+..+++|++|+++++. +...... ....+++|+.|++++|.-.. .+ |..+..++
T Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-p~~~~~l~ 470 (570)
T 2z63_A 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG---IFNGLSSLEVLKMAGNSFQENFL-PDIFTELR 470 (570)
T ss_dssp TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCTT---TTTTCTTCCEEECTTCEEGGGEE-CSCCTTCT
T ss_pred CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccchh---hhhcCCcCcEEECcCCcCccccc-hhhhhccc
Confidence 000 112345566666665552 2222111 12346778888888776331 33 33356778
Q ss_pred CccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccCC
Q 041465 145 NLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDLE 213 (216)
Q Consensus 145 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~lp 213 (216)
+|++|++++|. ++.+.+ .....+++|++|++++|. +..+....- ..+++|+.|++.+.|
T Consensus 471 ~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~-------~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 471 NLTFLDLSQCQ-LEQLSP-TAFNSLSSLQVLNMASNQ-LKSVPDGIF-------DRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CSCCCTTTT-------TTCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-cccCCh-hhhhcccCCCEEeCCCCc-CCCCCHHHh-------hcccCCcEEEecCCc
Confidence 88888888774 555533 344567888888888874 444432111 146788888888743
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.33 E-value=7.3e-12 Score=102.24 Aligned_cols=177 Identities=15% Similarity=0.078 Sum_probs=96.7
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccC-------
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEE------- 80 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~------- 80 (216)
+++|++|+++++.+..+.+ ...+++|++|++++|....+| ..++|++|++++|... .+.+..
T Consensus 57 l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~l~------~~~~L~~L~l~~n~l~-~~~~~~~~~L~~L 125 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELL------VGPSIETLHAANNNIS-RVSCSRGQGKKNI 125 (317)
T ss_dssp CTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSEEEEEE------ECTTCCEEECCSSCCS-EEEECCCSSCEEE
T ss_pred CCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCCcccccc------CCCCcCEEECCCCccC-CcCccccCCCCEE
Confidence 5677888887766654332 134566666666666443333 1244444444444332 111100
Q ss_pred --------ccccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEe
Q 041465 81 --------GCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAF 152 (216)
Q Consensus 81 --------~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~ 152 (216)
+.....++.+++|+.|+++++ .+..+...... ..+++|+.|++++|. ++.++. ...+++|++|+++
T Consensus 126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~--~~~l~~L~~L~Ls 199 (317)
T 3o53_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELA--ASSDTLEHLNLQYNF-IYDVKG--QVVFAKLKTLDLS 199 (317)
T ss_dssp ECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGG--GGTTTCCEEECTTSC-CCEEEC--CCCCTTCCEEECC
T ss_pred ECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHh--hccCcCCEEECCCCc-Cccccc--ccccccCCEEECC
Confidence 000112445788888888775 45544322111 246778888888775 555533 2347788888888
Q ss_pred cCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccCC
Q 041465 153 GCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDLE 213 (216)
Q Consensus 153 ~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~lp 213 (216)
+|. ++.+.+ ....+++|++|++++|. +..+... -..+++|+.|++.+.+
T Consensus 200 ~N~-l~~l~~--~~~~l~~L~~L~L~~N~-l~~l~~~--------~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 200 SNK-LAFMGP--EFQSAAGVTWISLRNNK-LVLIEKA--------LRFSQNLEHFDLRGNG 248 (317)
T ss_dssp SSC-CCEECG--GGGGGTTCSEEECTTSC-CCEECTT--------CCCCTTCCEEECTTCC
T ss_pred CCc-CCcchh--hhcccCcccEEECcCCc-ccchhhH--------hhcCCCCCEEEccCCC
Confidence 764 666532 24567788888888774 4444210 0135666666666543
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.33 E-value=1.1e-11 Score=101.42 Aligned_cols=188 Identities=15% Similarity=0.124 Sum_probs=105.4
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCc-ChHHHHhhCCCCcEEEEeecCCceeEeccCc-----
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACF-PIWNVLERFHNLEKLILVCFSFNEEVFSEEG----- 81 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~-p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~----- 81 (216)
.+++++|++++++++.+.+..+ ..+++|++|++++|....+ |.. +..+++|++|++++|... .+.....
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~ 125 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDF--KNLKNLHTLILINNKISKISPGA--FAPLVKLERLYLSKNQLK-ELPEKMPKTLQE 125 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEECCSSCCCCBCTTT--TTTCTTCCEEECCSSCCS-BCCSSCCTTCCE
T ss_pred CCCCeEEECCCCcCCEeChhhh--ccCCCCCEEECCCCcCCeeCHHH--hcCCCCCCEEECCCCcCC-ccChhhcccccE
Confidence 5799999999998887655443 3589999999999977655 543 458999999999998755 3321100
Q ss_pred ----------cccccccccccccEEecCccc---------------ccceecccCccc----CCcCCcccEEEEecCcCc
Q 041465 82 ----------CLEKHVGKLAMIKTLELNRHY---------------HLKQLCKQDSKL----GPIFQYLEILKVYHCQSL 132 (216)
Q Consensus 82 ----------~~~~~~~~l~~L~~L~l~~~~---------------~L~~l~~~~~~~----~~~l~~L~~L~i~~c~~L 132 (216)
.....++.+++|+.|+++++. +|+.+....... ...+++|++|++++|. +
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-l 204 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK-I 204 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSC-C
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCc-C
Confidence 001113456777777766542 222221111000 0112344555554443 3
Q ss_pred eeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccC
Q 041465 133 LILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 133 ~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~l 212 (216)
+.+.+..+..+++|++|++++|. ++.+.+ .....+++|++|++++|. +..+... -..+++|++|++.+.
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~~--------l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNS-ISAVDN-GSLANTPHLRELHLNNNK-LVKVPGG--------LADHKYIQVVYLHNN 273 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSC-CCEECT-TTGGGSTTCCEEECCSSC-CSSCCTT--------TTTCSSCCEEECCSS
T ss_pred CccCHHHhcCCCCCCEEECCCCc-CceeCh-hhccCCCCCCEEECCCCc-CccCChh--------hccCCCcCEEECCCC
Confidence 33333334455666666666653 444332 233456666666666663 3333210 013567777777654
No 56
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.32 E-value=1.5e-11 Score=111.78 Aligned_cols=61 Identities=13% Similarity=-0.006 Sum_probs=34.4
Q ss_pred CCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 118 FQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 118 l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
+++|+.|+++++. ++...|..+..+++|++|+++++. ++..+| .....+++|++|+++++.
T Consensus 631 l~~L~~LdLs~N~-l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip-~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 631 NGSMMFLDMSYNM-LSGYIPKEIGSMPYLFILNLGHND-ISGSIP-DEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp SBCCCEEECCSSC-CBSCCCGGGGGCTTCCEEECCSSC-CCSCCC-GGGGGCTTCCEEECCSSC
T ss_pred cccccEEECcCCc-ccccCCHHHhccccCCEEeCcCCc-cCCCCC-hHHhCCCCCCEEECCCCc
Confidence 4566677776664 333334435566666666666653 443333 234556666666666664
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.31 E-value=2.1e-11 Score=99.31 Aligned_cols=166 Identities=17% Similarity=0.225 Sum_probs=121.8
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|++|+++++.+..+.+ ...+++|++|++++|....+|. +..+++|++|++++|... .+ + .+
T Consensus 62 l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~-~~-~-------~l 125 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNVSA---IAGLQSIKTLDLTSTQIT-DV-T-------PL 125 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCCGG---GTTCTTCCEEECTTSCCC-CC-G-------GG
T ss_pred cCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCCCchh---hcCCCCCCEEECCCCCCC-Cc-h-------hh
Confidence 7899999999988876543 2458899999999998766663 348999999999998765 32 2 25
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
+.+++|+.|+++++ .+..+.. ...+++|+.|++++|. ++.+++ +..+++|++|++++|. ++.+.+ ..
T Consensus 126 ~~l~~L~~L~l~~n-~l~~~~~-----l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~---l~ 192 (308)
T 1h6u_A 126 AGLSNLQVLYLDLN-QITNISP-----LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNK-ISDISP---LA 192 (308)
T ss_dssp TTCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSC-CCCCGG---GG
T ss_pred cCCCCCCEEECCCC-ccCcCcc-----ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCc-cCcChh---hc
Confidence 57899999999887 4554422 2367899999999884 666543 5678999999999884 666532 56
Q ss_pred hccCCcEEEEecCccchhhccCCccccccceeecccccceecccC
Q 041465 168 TLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 168 ~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~l 212 (216)
.+++|++|++++|. +..+.+ -..+++|+.|++.+.
T Consensus 193 ~l~~L~~L~L~~N~-l~~~~~---------l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 193 SLPNLIEVHLKNNQ-ISDVSP---------LANTSNLFIVTLTNQ 227 (308)
T ss_dssp GCTTCCEEECTTSC-CCBCGG---------GTTCTTCCEEEEEEE
T ss_pred CCCCCCEEEccCCc-cCcccc---------ccCCCCCCEEEccCC
Confidence 78999999999985 444431 114678888887654
No 58
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.30 E-value=1.2e-11 Score=99.93 Aligned_cols=144 Identities=15% Similarity=0.177 Sum_probs=80.9
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|++|+++++.++.+. + ...+++|++|++++|....++. +..+++|++|++++|... .+ + .+
T Consensus 45 l~~L~~L~l~~~~i~~~~-~---~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~-~~-~-------~l 108 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-G---IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVK-DL-S-------SL 108 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-T---GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC-CG-G-------GG
T ss_pred cCcccEEEccCCCcccCh-h---HhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCC-CC-h-------hh
Confidence 677888888887766541 1 2347788888888886655553 237788888888777654 21 1 14
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
+.+++|+.|+++++ ++..+. ....+++|+.|++++|. ++.+ +. +..+++|++|++++|. ++.+.+ ..
T Consensus 109 ~~l~~L~~L~L~~n-~i~~~~-----~l~~l~~L~~L~l~~n~-l~~~-~~-l~~l~~L~~L~L~~N~-l~~~~~---l~ 175 (291)
T 1h6t_A 109 KDLKKLKSLSLEHN-GISDIN-----GLVHLPQLESLYLGNNK-ITDI-TV-LSRLTKLDTLSLEDNQ-ISDIVP---LA 175 (291)
T ss_dssp TTCTTCCEEECTTS-CCCCCG-----GGGGCTTCCEEECCSSC-CCCC-GG-GGGCTTCSEEECCSSC-CCCCGG---GT
T ss_pred ccCCCCCEEECCCC-cCCCCh-----hhcCCCCCCEEEccCCc-CCcc-hh-hccCCCCCEEEccCCc-cccchh---hc
Confidence 45667777776655 233321 11235556666665553 3333 21 3445556666655552 444321 34
Q ss_pred hccCCcEEEEecC
Q 041465 168 TLVQLVTVSICGC 180 (216)
Q Consensus 168 ~l~~L~~L~i~~C 180 (216)
.+++|++|++++|
T Consensus 176 ~l~~L~~L~L~~N 188 (291)
T 1h6t_A 176 GLTKLQNLYLSKN 188 (291)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCccCEEECCCC
Confidence 4555555555555
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=1.3e-11 Score=106.69 Aligned_cols=177 Identities=15% Similarity=0.088 Sum_probs=104.2
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccC-------
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEE------- 80 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~------- 80 (216)
+++|++|+++++.+..+.+ ...+++|++|++++|....+|. .++|++|++++|... .+.+..
T Consensus 57 l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l~~------~~~L~~L~L~~N~l~-~~~~~~l~~L~~L 125 (487)
T 3oja_A 57 FTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLV------GPSIETLHAANNNIS-RVSCSRGQGKKNI 125 (487)
T ss_dssp CTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEEEEEEE------CTTCCEEECCSSCCC-CEEECCCSSCEEE
T ss_pred CCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcCCCCCC------CCCcCEEECcCCcCC-CCCccccCCCCEE
Confidence 6788888888877765432 2346677777777664433331 144444444444332 111100
Q ss_pred --------ccccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEe
Q 041465 81 --------GCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAF 152 (216)
Q Consensus 81 --------~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~ 152 (216)
+..+..++.+++|+.|++++. .+..+....+. ..+++|+.|++++|. ++.+++. ..+++|++|+++
T Consensus 126 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~l~~L~~L~Ls~N~-l~~~~~~--~~l~~L~~L~Ls 199 (487)
T 3oja_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELA--ASSDTLEHLNLQYNF-IYDVKGQ--VVFAKLKTLDLS 199 (487)
T ss_dssp ECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGG--GGTTTCCEEECTTSC-CCEEECC--CCCTTCCEEECC
T ss_pred ECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHh--hhCCcccEEecCCCc-ccccccc--ccCCCCCEEECC
Confidence 111123456888999988876 45544322211 246888888888876 6666443 458888888888
Q ss_pred cCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccCC
Q 041465 153 GCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDLE 213 (216)
Q Consensus 153 ~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~lp 213 (216)
+|. ++.+++ . ...+++|+.|++++|. +..+... -..+++|+.|++.+.+
T Consensus 200 ~N~-l~~~~~-~-~~~l~~L~~L~Ls~N~-l~~lp~~--------l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 200 SNK-LAFMGP-E-FQSAAGVTWISLRNNK-LVLIEKA--------LRFSQNLEHFDLRGNG 248 (487)
T ss_dssp SSC-CCEECG-G-GGGGTTCSEEECTTSC-CCEECTT--------CCCCTTCCEEECTTCC
T ss_pred CCC-CCCCCH-h-HcCCCCccEEEecCCc-Ccccchh--------hccCCCCCEEEcCCCC
Confidence 874 776543 2 4577888888888875 4443211 1135677777776654
No 60
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.28 E-value=9.8e-12 Score=112.95 Aligned_cols=154 Identities=17% Similarity=0.087 Sum_probs=72.3
Q ss_pred CCccEEEEecCCC-CCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcc
Q 041465 35 GSLRELEIAEDNS-ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSK 113 (216)
Q Consensus 35 ~~L~~L~i~~c~~-~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 113 (216)
++|++|++++|.. ..+|.+ + ..+++|++|++++|... ...| ..++.+++|+.|+++++.--..+. .
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~-l-~~l~~L~~L~Ls~N~l~-~~~p------~~l~~l~~L~~L~L~~n~l~~~~p----~ 460 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPT-L-SNCSELVSLHLSFNYLS-GTIP------SSLGSLSKLRDLKLWLNMLEGEIP----Q 460 (768)
T ss_dssp CCCCEEECCSSEEEEECCGG-G-GGCTTCCEEECCSSEEE-SCCC------GGGGGCTTCCEEECCSSCCCSCCC----G
T ss_pred CCccEEECCCCccccccCHH-H-hcCCCCCEEECcCCccc-Cccc------HHHhcCCCCCEEECCCCcccCcCC----H
Confidence 3444444444432 233433 2 24555555555554332 1212 123445566666665543111111 1
Q ss_pred cCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCccc
Q 041465 114 LGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEG 193 (216)
Q Consensus 114 ~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~ 193 (216)
....+++|++|++++|. ++...|..+..+++|++|++++|. +....+ .+...+++|++|++++|.....+.. .
T Consensus 461 ~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~-~--- 533 (768)
T 3rgz_A 461 ELMYVKTLETLILDFND-LTGEIPSGLSNCTNLNWISLSNNR-LTGEIP-KWIGRLENLAILKLSNNSFSGNIPA-E--- 533 (768)
T ss_dssp GGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSC-CCSCCC-GGGGGCTTCCEEECCSSCCEEECCG-G---
T ss_pred HHcCCCCceEEEecCCc-ccCcCCHHHhcCCCCCEEEccCCc-cCCcCC-hHHhcCCCCCEEECCCCcccCcCCH-H---
Confidence 11245666666666664 332223335566667777776664 433332 3445566677777766653322210 0
Q ss_pred cccceeecccccceecccC
Q 041465 194 VEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 194 ~~~~~~~~~~L~~L~l~~l 212 (216)
-..+++|+.|++.++
T Consensus 534 ----l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 534 ----LGDCRSLIWLDLNTN 548 (768)
T ss_dssp ----GGGCTTCCEEECCSS
T ss_pred ----HcCCCCCCEEECCCC
Confidence 013566666666544
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.28 E-value=2.4e-11 Score=108.52 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=114.7
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
.+++++|+++++.++.+.+..+ ..+++|++|++++|....++.. .+..+++|++|++++|... .+.+ ..+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-~l~~------~~~ 93 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANF--TRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELS-QLSD------KTF 93 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGG--GGGTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSSCCC-CCCT------TTT
T ss_pred CCCCcEEECCCCCCCCcCHHHH--hCCCcCcEEECCCCccCccCHH-HHhcccCcCEEECCCCccC-ccCh------hhh
Confidence 3689999999988887654433 3589999999999977555444 4569999999999998765 4322 235
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchH-H
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSST-A 166 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~-~ 166 (216)
+.+++|++|+++++ ++..+....+ ..+++|++|++++|. +....+..+..+++|++|++++|. ++.+.+... .
T Consensus 94 ~~l~~L~~L~L~~n-~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 167 (680)
T 1ziw_A 94 AFCTNLTELHLMSN-SIQKIKNNPF---VKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDI 167 (680)
T ss_dssp TTCTTCSEEECCSS-CCCCCCSCTT---TTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGG
T ss_pred ccCCCCCEEECCCC-ccCccChhHc---cccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCc-ccccCHHHhhc
Confidence 67999999999987 4555533322 368899999999985 555555546678999999999874 665543222 1
Q ss_pred hhccCCcEEEEecCc
Q 041465 167 KTLVQLVTVSICGCS 181 (216)
Q Consensus 167 ~~l~~L~~L~i~~C~ 181 (216)
..+++|++|++++|.
T Consensus 168 ~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 168 FANSSLKKLELSSNQ 182 (680)
T ss_dssp GTTCEESEEECTTCC
T ss_pred cccccccEEECCCCc
Confidence 245789999998884
No 62
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.28 E-value=4.1e-11 Score=102.75 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=31.6
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCC
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSF 72 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~ 72 (216)
+++|++|+++++.+..+.. ...+++|++|++++|....++. .+.+++|++|++++|..
T Consensus 176 l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDISV----LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQL 233 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG----GGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCC
T ss_pred CCCCCEEECcCCcCCCChh----hccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCc
Confidence 5677777777766554311 1235666666666665433321 12556666666655543
No 63
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.27 E-value=3.9e-11 Score=106.90 Aligned_cols=168 Identities=11% Similarity=0.117 Sum_probs=96.4
Q ss_pred ccceEEcccccccccccCCCCc---c--ccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccc-
Q 041465 10 NLKELSLSGKDVKLILQADFPQ---H--FFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCL- 83 (216)
Q Consensus 10 ~Le~L~l~~~~l~~i~~~~~~~---~--~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~- 83 (216)
+|++|+++++.+....+..++. . .+++|++|++++|....+|.. +...+++|++|++++|... .+.+.....
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~-~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~ 480 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE-LFSTGSPLSSINLMGNMLT-EIPKNSLKDE 480 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH-HHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHH-HHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence 5666666665554433222210 0 245888888888877788877 6667899999999888765 332211000
Q ss_pred cccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCC-----CCc
Q 041465 84 EKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCK-----KLL 158 (216)
Q Consensus 84 ~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~-----~L~ 158 (216)
......+++|+.|+++++ ++..+..... ...+++|+.|++++|. ++.+ |..+..+++|++|++++++ ++.
T Consensus 481 ~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~--~~~l~~L~~L~Ls~N~-l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFN-KLTKLSDDFR--ATTLPYLVGIDLSYNS-FSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp TEECTTGGGCCEEECCSS-CCCBCCGGGS--TTTCTTCCEEECCSSC-CSSC-CCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred cccccccCCccEEECcCC-cCCccChhhh--hccCCCcCEEECCCCC-CCCc-ChhhhcCCCCCEEECCCCcccccCccc
Confidence 000123348888888775 4554432110 0156778888887764 4444 3336677777887775432 222
Q ss_pred ccCCchHHhhccCCcEEEEecCccchhh
Q 041465 159 HMVTSSTAKTLVQLVTVSICGCSAMTEV 186 (216)
Q Consensus 159 ~l~~~~~~~~l~~L~~L~i~~C~~l~~i 186 (216)
...+ .....+++|++|++++|.- ..+
T Consensus 556 ~~~p-~~l~~l~~L~~L~Ls~N~l-~~i 581 (636)
T 4eco_A 556 REWP-EGITLCPSLTQLQIGSNDI-RKV 581 (636)
T ss_dssp CCCC-TTGGGCSSCCEEECCSSCC-CBC
T ss_pred ccCh-HHHhcCCCCCEEECCCCcC-Ccc
Confidence 2222 2345677777777777753 444
No 64
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=3.9e-11 Score=93.06 Aligned_cols=150 Identities=16% Similarity=0.192 Sum_probs=94.9
Q ss_pred ceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccc
Q 041465 12 KELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLA 91 (216)
Q Consensus 12 e~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~ 91 (216)
+.++.++++++.+. ....++|+.|+++++....+|.. .+..+++|++|++++|... .+.+ ..+..++
T Consensus 14 ~~v~c~~~~l~~iP-----~~l~~~l~~L~l~~n~i~~i~~~-~~~~l~~L~~L~Ls~N~i~-~~~~------~~~~~l~ 80 (220)
T 2v9t_B 14 NIVDCRGKGLTEIP-----TNLPETITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQIS-ELAP------DAFQGLR 80 (220)
T ss_dssp TEEECTTSCCSSCC-----SSCCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECCSSCCC-EECT------TTTTTCS
T ss_pred CEEEcCCCCcCcCC-----CccCcCCCEEECCCCcCCCcCHh-HhhCCCCCCEEECCCCcCC-CcCH------HHhhCCc
Confidence 45566665665532 12236788888888876666654 3457778888888777665 4433 1345677
Q ss_pred cccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccC
Q 041465 92 MIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQ 171 (216)
Q Consensus 92 ~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~ 171 (216)
+|+.|++++. .++.+....+ ..+++|+.|+++++. ++.+.+..+..+++|++|+++++. ++.+.+ .....+++
T Consensus 81 ~L~~L~Ls~N-~l~~l~~~~f---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~ 153 (220)
T 2v9t_B 81 SLNSLVLYGN-KITELPKSLF---EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAK-GTFSPLRA 153 (220)
T ss_dssp SCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTT
T ss_pred CCCEEECCCC-cCCccCHhHc---cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECH-HHHhCCCC
Confidence 8888888775 4555533222 246778888887764 666655545667888888888764 665533 33456777
Q ss_pred CcEEEEecCc
Q 041465 172 LVTVSICGCS 181 (216)
Q Consensus 172 L~~L~i~~C~ 181 (216)
|++|++.+++
T Consensus 154 L~~L~L~~N~ 163 (220)
T 2v9t_B 154 IQTMHLAQNP 163 (220)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEeCCCC
Confidence 8888877654
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.27 E-value=2e-11 Score=106.66 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=102.3
Q ss_pred ccceEEcccccccccccCCCCccccCCccEEEEecCCC-CCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccccc
Q 041465 10 NLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNS-ACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVG 88 (216)
Q Consensus 10 ~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~-~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~ 88 (216)
+|++|+++++.+..+ |...+++|+.|++++|.. ..++. ..+++|++|++++|... ..... ...+.
T Consensus 305 ~L~~L~l~~n~~~~l-----~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~-~~~~~----~~~~~ 370 (570)
T 2z63_A 305 GWQHLELVNCKFGQF-----PTLKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLS-FKGCC----SQSDF 370 (570)
T ss_dssp CCSEEEEESCBCSSC-----CBCBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCCB-EEEEE----EHHHH
T ss_pred CccEEeeccCccccc-----CcccccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCccC-ccccc----ccccc
Confidence 899999999877643 334689999999999965 44443 38999999999998765 33100 01123
Q ss_pred ccccccEEecCcc------------cccceecccCc--------ccCCcCCcccEEEEecCcCceeecCCCcccCCCccE
Q 041465 89 KLAMIKTLELNRH------------YHLKQLCKQDS--------KLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTK 148 (216)
Q Consensus 89 ~l~~L~~L~l~~~------------~~L~~l~~~~~--------~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~ 148 (216)
.+++|+.|+++++ ++|+.+...+. .....+++|++|++++|. +....+..+..+++|++
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 449 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEV 449 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCE
T ss_pred ccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcE
Confidence 4556666655543 12222211100 011245667777777664 33333443455677777
Q ss_pred EEEecCCCCc-ccCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccC
Q 041465 149 LVAFGCKKLL-HMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 149 L~i~~C~~L~-~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~l 212 (216)
|++++|. +. ...+ .....+++|++|++++|. +..+....- ..+++|++|++.++
T Consensus 450 L~l~~n~-l~~~~~p-~~~~~l~~L~~L~l~~n~-l~~~~~~~~-------~~l~~L~~L~l~~n 504 (570)
T 2z63_A 450 LKMAGNS-FQENFLP-DIFTELRNLTFLDLSQCQ-LEQLSPTAF-------NSLSSLQVLNMASN 504 (570)
T ss_dssp EECTTCE-EGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTTTT-------TTCTTCCEEECCSS
T ss_pred EECcCCc-Cccccch-hhhhcccCCCEEECCCCc-cccCChhhh-------hcccCCCEEeCCCC
Confidence 7777764 32 1122 234566777777777774 333321111 13567777777654
No 66
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.26 E-value=1.8e-11 Score=108.48 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=77.2
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|+.|.++++.+..+. ....+++|+.|++++|....+|. +..+++|++|++++|... .+ + .+
T Consensus 42 L~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~-~l-~-------~l 105 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIK-DL-S-------SL 105 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT----TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCC-CC-T-------TS
T ss_pred CCCCCEEECcCCCCCCCh----HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCC-CC-h-------hh
Confidence 567777777776665532 12346777777777776554543 236777777777776544 21 1 23
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
..+++|+.|+++++ .+..+. ....+++|+.|.+++|. +..+ +. +..+++|+.|++++|. +..+.+ ..
T Consensus 106 ~~l~~L~~L~Ls~N-~l~~l~-----~l~~l~~L~~L~Ls~N~-l~~l-~~-l~~l~~L~~L~Ls~N~-l~~~~~---l~ 172 (605)
T 1m9s_A 106 KDLKKLKSLSLEHN-GISDIN-----GLVHLPQLESLYLGNNK-ITDI-TV-LSRLTKLDTLSLEDNQ-ISDIVP---LA 172 (605)
T ss_dssp TTCTTCCEEECTTS-CCCCCG-----GGGGCTTCSEEECCSSC-CCCC-GG-GGSCTTCSEEECCSSC-CCCCGG---GT
T ss_pred ccCCCCCEEEecCC-CCCCCc-----cccCCCccCEEECCCCc-cCCc-hh-hcccCCCCEEECcCCc-CCCchh---hc
Confidence 45666666666654 233321 11235556666665553 3333 21 3445556666665553 444321 34
Q ss_pred hccCCcEEEEecC
Q 041465 168 TLVQLVTVSICGC 180 (216)
Q Consensus 168 ~l~~L~~L~i~~C 180 (216)
.+++|++|++++|
T Consensus 173 ~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 173 GLTKLQNLYLSKN 185 (605)
T ss_dssp TCTTCCEEECCSS
T ss_pred cCCCCCEEECcCC
Confidence 4555555555555
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.25 E-value=9.6e-11 Score=104.68 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=38.1
Q ss_pred cccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 9 PNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 9 p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
++|++|+++++.+..+.+..+..-..++|+.|++++|....++.. .+..+++|++|++++|...
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND-SFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSCCBS
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc-cccCcccccEeeCCCCccC
Confidence 567777777766655443333211124578888877765444433 3347777788777777655
No 68
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.24 E-value=5.7e-11 Score=92.12 Aligned_cols=151 Identities=11% Similarity=0.142 Sum_probs=103.4
Q ss_pred cceEEcccccccccccCCCCccccCCccEEEEecCCCCCc-ChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccc
Q 041465 11 LKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACF-PIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGK 89 (216)
Q Consensus 11 Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~-p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~ 89 (216)
-+.++++++.++.+. ....+.+++|+++++....+ |.. .+..+++|++|++++|... .+.+ ..++.
T Consensus 13 ~~~l~~s~n~l~~iP-----~~~~~~~~~L~L~~N~l~~~~~~~-~~~~l~~L~~L~L~~N~i~-~i~~------~~~~~ 79 (220)
T 2v70_A 13 GTTVDCSNQKLNKIP-----EHIPQYTAELRLNNNEFTVLEATG-IFKKLPQLRKINFSNNKIT-DIEE------GAFEG 79 (220)
T ss_dssp TTEEECCSSCCSSCC-----SCCCTTCSEEECCSSCCCEECCCC-CGGGCTTCCEEECCSSCCC-EECT------TTTTT
T ss_pred CCEeEeCCCCcccCc-----cCCCCCCCEEEcCCCcCCccCchh-hhccCCCCCEEECCCCcCC-EECH------HHhCC
Confidence 357778777776643 22345678889888876555 333 4458888999999888765 4433 13557
Q ss_pred cccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhc
Q 041465 90 LAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTL 169 (216)
Q Consensus 90 l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l 169 (216)
+++|+.|++++. .+..+....+ ..+++|++|+++++. ++.+.+..+..+++|++|+++++ +++.+.+ .....+
T Consensus 80 l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l 152 (220)
T 2v70_A 80 ASGVNEILLTSN-RLENVQHKMF---KGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN-QITTVAP-GAFDTL 152 (220)
T ss_dssp CTTCCEEECCSS-CCCCCCGGGG---TTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTS-CCCCBCT-TTTTTC
T ss_pred CCCCCEEECCCC-ccCccCHhHh---cCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCC-cCCEECH-HHhcCC
Confidence 888888888875 4555433222 357888888888875 66665655667888999998886 4666543 345678
Q ss_pred cCCcEEEEecCc
Q 041465 170 VQLVTVSICGCS 181 (216)
Q Consensus 170 ~~L~~L~i~~C~ 181 (216)
++|++|++++++
T Consensus 153 ~~L~~L~L~~N~ 164 (220)
T 2v70_A 153 HSLSTLNLLANP 164 (220)
T ss_dssp TTCCEEECCSCC
T ss_pred CCCCEEEecCcC
Confidence 888888887764
No 69
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.24 E-value=4.2e-11 Score=96.71 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=113.3
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|++|+++++.+..+.+ ...+++|++|++++|....+|. +..+++|++|++++|... .+ + .+
T Consensus 67 l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~n~i~-~~-~-------~l 130 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLSLEHNGIS-DI-N-------GL 130 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCGGG---GTTCTTCCEEECTTSCCC-CC-G-------GG
T ss_pred CCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCcCCCChh---hccCCCCCEEECCCCcCC-CC-h-------hh
Confidence 7899999999988887543 2458999999999998766663 358999999999998765 32 2 25
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
..+++|+.|+++++ ++..+ .....+++|+.|++++|. ++.+.+ +..+++|++|++++| .++.+. ...
T Consensus 131 ~~l~~L~~L~l~~n-~l~~~-----~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N-~i~~l~---~l~ 197 (291)
T 1h6t_A 131 VHLPQLESLYLGNN-KITDI-----TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKN-HISDLR---ALA 197 (291)
T ss_dssp GGCTTCCEEECCSS-CCCCC-----GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-CCCBCG---GGT
T ss_pred cCCCCCCEEEccCC-cCCcc-----hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCC-cCCCCh---hhc
Confidence 57899999999987 45554 122368999999999984 666644 567999999999998 477652 357
Q ss_pred hccCCcEEEEecCc
Q 041465 168 TLVQLVTVSICGCS 181 (216)
Q Consensus 168 ~l~~L~~L~i~~C~ 181 (216)
.+++|+.|++++++
T Consensus 198 ~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 198 GLKNLDVLELFSQE 211 (291)
T ss_dssp TCTTCSEEEEEEEE
T ss_pred cCCCCCEEECcCCc
Confidence 78999999999885
No 70
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.24 E-value=2.4e-11 Score=92.47 Aligned_cols=151 Identities=15% Similarity=0.090 Sum_probs=109.8
Q ss_pred cccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccC
Q 041465 32 HFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQD 111 (216)
Q Consensus 32 ~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~ 111 (216)
..+++|+.|++++|....+| . + ..+++|++|++++|... . ++ .+..+++|++|+++++ .+......
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~-l-~~l~~L~~L~l~~n~~~-~-~~-------~l~~l~~L~~L~l~~n-~l~~~~~~- 106 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-G-I-EYAHNIKDLTINNIHAT-N-YN-------PISGLSNLERLRIMGK-DVTSDKIP- 106 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-T-G-GGCTTCSEEEEESCCCS-C-CG-------GGTTCTTCCEEEEECT-TCBGGGSC-
T ss_pred hhcCCccEEeccCCCccChH-H-H-hcCCCCCEEEccCCCCC-c-ch-------hhhcCCCCCEEEeECC-ccCcccCh-
Confidence 45889999999999877777 3 3 48999999999998443 2 22 2557999999999986 34432222
Q ss_pred cccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCc
Q 041465 112 SKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGK 191 (216)
Q Consensus 112 ~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~ 191 (216)
....+++|+.|++++|. ++...+..+..+++|++|++++|..++.+. ....+++|++|++++|. +..+. .
T Consensus 107 --~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~-i~~~~---~ 176 (197)
T 4ezg_A 107 --NLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG-VHDYR---G 176 (197)
T ss_dssp --CCTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC-CCCCT---T
T ss_pred --hhcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC-CcChH---H
Confidence 22368999999999986 443223335678999999999997676652 45788999999999985 44432 1
Q ss_pred cccccceeecccccceecccC
Q 041465 192 EGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 192 ~~~~~~~~~~~~L~~L~l~~l 212 (216)
-..+++|++|++.+-
T Consensus 177 ------l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 177 ------IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp ------GGGCSSCCEEEECBC
T ss_pred ------hccCCCCCEEEeeCc
Confidence 115789999988763
No 71
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.23 E-value=5.9e-11 Score=101.74 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=40.0
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
+++|++|+++++.+..+.+ ...+++|+.|++++|....++. +..+++|++|++++|...
T Consensus 198 l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQIS 256 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCC
T ss_pred CCCCCEEEecCCccccccc----ccccCCCCEEECCCCCcccchh---hhcCCCCCEEECCCCccc
Confidence 6788888888877665432 2346778888888876655542 246777888877777554
No 72
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.23 E-value=8.4e-11 Score=90.02 Aligned_cols=130 Identities=17% Similarity=0.155 Sum_probs=56.6
Q ss_pred CCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCccc
Q 041465 35 GSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKL 114 (216)
Q Consensus 35 ~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~ 114 (216)
++|++|+++++....+|.. .+..+++|++|++++|... .+.+ ..++.+++|++|++++. ++..+....
T Consensus 28 ~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~~~~------~~~~~l~~L~~L~Ls~n-~l~~~~~~~--- 95 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGNKLQ-SLPN------GVFNKLTSLTYLNLSTN-QLQSLPNGV--- 95 (208)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCC-CCCT------TTTTTCTTCCEEECCSS-CCCCCCTTT---
T ss_pred CCCcEEEcCCCccCcCChh-hhcccccCcEEECCCCccC-ccCh------hhcCCCCCcCEEECCCC-cCCccCHhH---
Confidence 4555555555544444433 3334555555555554333 2211 11234455555555543 233322111
Q ss_pred CCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEec
Q 041465 115 GPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICG 179 (216)
Q Consensus 115 ~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 179 (216)
...+++|+.|+++++. ++.+++..+..+++|++|+++++. ++.+.+ .....+++|++|++.+
T Consensus 96 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPD-GVFDRLTSLQYIWLHD 157 (208)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCS
T ss_pred hcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCH-HHhccCCCccEEEecC
Confidence 1234555555555442 444433323345555555555542 443322 2233455555555554
No 73
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.23 E-value=4.9e-11 Score=105.05 Aligned_cols=137 Identities=19% Similarity=0.166 Sum_probs=99.9
Q ss_pred cccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccccc
Q 041465 9 PNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVG 88 (216)
Q Consensus 9 p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~ 88 (216)
+++++|++++++++.+.+..+ ..+++|++|++++|....+|.. .++.+++|++|++++|... .+.+ ..++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f--~~l~~L~~L~Ls~N~i~~i~~~-~f~~L~~L~~L~Ls~N~l~-~l~~------~~f~ 121 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQ-SLAL------GAFS 121 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCC-EECG------GGGT
T ss_pred cCCCEEEeeCCCCCCCCHHHH--hCCCCCCEEECCCCcCCCcChh-HhcCCCCCCEEEccCCcCC-CCCH------HHhc
Confidence 379999999998888765554 3578999999999988777766 5568999999999988765 4433 2356
Q ss_pred ccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceee-cCCCcccCCCccEEEEecCCCCcccC
Q 041465 89 KLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLIL-LPSSSVSFRNLTKLVAFGCKKLLHMV 161 (216)
Q Consensus 89 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l-~~~~~~~l~~L~~L~i~~C~~L~~l~ 161 (216)
.+++|++|+++++ +++.+....+ ..+++|++|+++++. ++.+ .|.....+++|++|+++++. ++.+.
T Consensus 122 ~L~~L~~L~Ls~N-~l~~l~~~~~---~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 189 (635)
T 4g8a_A 122 GLSSLQKLVAVET-NLASLENFPI---GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIY 189 (635)
T ss_dssp TCTTCCEEECTTS-CCCCSTTCCC---TTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEEC
T ss_pred CCCCCCEEECCCC-cCCCCChhhh---hcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcc-ccccc
Confidence 7899999999887 5666543322 357889999998875 4333 23334568899999998874 65553
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=100.53 Aligned_cols=87 Identities=15% Similarity=0.017 Sum_probs=53.0
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCC-CcC---hHHHHhhCCCCcEEEEeecCCceeEeccCccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSA-CFP---IWNVLERFHNLEKLILVCFSFNEEVFSEEGCL 83 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~-~~p---~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~ 83 (216)
+++|++|+++++.+....+..+....+++|++|++++|... ..| .. ....+++|++|++++|... .+.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~-~~~~~~~L~~L~Ls~n~l~-~~~~----- 162 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL-QQWLKPGLKVLSIAQAHSP-AFSC----- 162 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH-HTTBCSCCCEEEEECCSSC-CCCT-----
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH-HhhhccCCCEEEeeCCCcc-hhhH-----
Confidence 35688888888776654433221134678888888888643 222 11 1226788888888887765 3332
Q ss_pred cccccccccccEEecCccc
Q 041465 84 EKHVGKLAMIKTLELNRHY 102 (216)
Q Consensus 84 ~~~~~~l~~L~~L~l~~~~ 102 (216)
..++.+++|++|+++++.
T Consensus 163 -~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 163 -EQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp -TSCCCCTTCCEEECCSCT
T ss_pred -HHhccCCCCCEEECCCCC
Confidence 124456777777776653
No 75
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=1.1e-10 Score=107.20 Aligned_cols=160 Identities=13% Similarity=0.123 Sum_probs=99.6
Q ss_pred CCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccc-cccccccccccEEecCcccccceecccCcc
Q 041465 35 GSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCL-EKHVGKLAMIKTLELNRHYHLKQLCKQDSK 113 (216)
Q Consensus 35 ~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 113 (216)
++|+.|++++|....+|.+ +...+++|++|++++|... .+.+..... ......+++|+.|+++++ ++..+.....
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~-~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~- 748 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTE-LFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFR- 748 (876)
T ss_dssp CCEEEEECCSSCCCSCCHH-HHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGS-
T ss_pred CCcCEEEccCCcCCccCHH-HHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC-CCccchHHhh-
Confidence 4788888888877788887 6668899999999888655 332211000 000123458889988887 5655532210
Q ss_pred cCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCC-----CCcccCCchHHhhccCCcEEEEecCccchhhcc
Q 041465 114 LGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCK-----KLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVI 188 (216)
Q Consensus 114 ~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~-----~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~ 188 (216)
...+++|+.|++++|. ++.+ |..+..+++|+.|++++|+ ++....+ .....+++|++|++++|.. ..+..
T Consensus 749 -~~~l~~L~~L~Ls~N~-L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 749 -ATTLPYLSNMDVSYNC-FSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp -TTTCTTCCEEECCSSC-CSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred -hccCCCcCEEEeCCCC-CCcc-chhhhcCCCCCEEECCCCCCcccccccccCh-HHHhcCCCCCEEECCCCCC-CccCH
Confidence 0257888888888874 5555 3336778888888887633 2333333 3446788888888888863 44431
Q ss_pred CCccccccceeecccccceecccCC
Q 041465 189 NGKEGVEKEEIVFCKLKALILSDLE 213 (216)
Q Consensus 189 ~~~~~~~~~~~~~~~L~~L~l~~lp 213 (216)
. .+++|+.|++.+.|
T Consensus 824 ~----------l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 824 K----------LTPQLYILDIADNP 838 (876)
T ss_dssp C----------CCSSSCEEECCSCT
T ss_pred h----------hcCCCCEEECCCCC
Confidence 1 23566666666554
No 76
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.21 E-value=9.8e-11 Score=89.66 Aligned_cols=133 Identities=20% Similarity=0.188 Sum_probs=101.7
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
.++|++|++++++++.+.+..+ ..+++|++|++++|....+|.. .+..+++|++|++++|... .+.+ ..+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~-~~~~------~~~ 96 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVF--DELTSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTNQLQ-SLPN------GVF 96 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT--TTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC-CCCT------TTT
T ss_pred CCCCcEEEcCCCccCcCChhhh--cccccCcEEECCCCccCccChh-hcCCCCCcCEEECCCCcCC-ccCH------hHh
Confidence 5789999999988887554433 3589999999999987777766 5568999999999998765 4322 224
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCC
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCK 155 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~ 155 (216)
+.+++|+.|++++. ++..+.... ...+++|+.|+++++. ++.+++..+..+++|++|++++++
T Consensus 97 ~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 97 DKLTQLKELALNTN-QLQSLPDGV---FDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCccCCCEEEcCCC-cCcccCHhH---hccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 57899999999886 566553322 2358899999999974 666766545678999999999874
No 77
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.21 E-value=6.4e-11 Score=92.34 Aligned_cols=131 Identities=17% Similarity=0.109 Sum_probs=69.2
Q ss_pred cCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcc
Q 041465 34 FGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSK 113 (216)
Q Consensus 34 ~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 113 (216)
.++|++|++++|....++.. .+..+++|++|++++|... .+.+ ..++.+++|+.|++++. +++.+....+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N~l~-~i~~------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~- 108 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPG-VFDSLINLKELYLGSNQLG-ALPV------GVFDSLTQLTVLDLGTN-QLTVLPSAVF- 108 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC-CCCT------TTTTTCTTCCEEECCSS-CCCCCCTTTT-
T ss_pred CCCCCEEEcCCCccCccCHH-HhhCccCCcEEECCCCCCC-CcCh------hhcccCCCcCEEECCCC-cCCccChhHh-
Confidence 35666666666655444322 2345666666666666543 2221 12345666666666664 4444432211
Q ss_pred cCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecC
Q 041465 114 LGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGC 180 (216)
Q Consensus 114 ~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 180 (216)
..+++|+.|+++++. ++.++.. +..+++|++|+++++ +++.+.+ .....+++|++|++.++
T Consensus 109 --~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 109 --DRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp --TTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred --CcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCC
Confidence 245666666666653 4444333 556666666666665 3555432 33445666666666554
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.21 E-value=2.1e-10 Score=105.23 Aligned_cols=162 Identities=17% Similarity=0.124 Sum_probs=114.5
Q ss_pred ccccccceEEcccccccccccCCCCccccCCccEEEEecCC-CCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccc
Q 041465 6 QIVPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDN-SACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLE 84 (216)
Q Consensus 6 ~~~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~-~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~ 84 (216)
...+++++|+++++.+..+.+..+ ..+++|++|++++|. ...++.. .+.++++|++|++++|... .+.|
T Consensus 21 ~lp~~l~~LdLs~N~i~~i~~~~~--~~l~~L~~LdLs~n~~~~~i~~~-~f~~L~~L~~L~Ls~N~l~-~~~p------ 90 (844)
T 3j0a_A 21 QVLNTTERLLLSFNYIRTVTASSF--PFLEQLQLLELGSQYTPLTIDKE-AFRNLPNLRILDLGSSKIY-FLHP------ 90 (844)
T ss_dssp SSCTTCCEEEEESCCCCEECSSSC--SSCCSCSEEEECTTCCCCEECTT-TTSSCTTCCEEECTTCCCC-EECT------
T ss_pred CCCCCcCEEECCCCcCCccChhHC--cccccCeEEeCCCCCCccccCHH-HhcCCCCCCEEECCCCcCc-ccCH------
Confidence 345789999999988887665544 358999999999994 4566444 4468999999999998876 5544
Q ss_pred ccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecC-CCcccCCCccEEEEecCCCCcccCCc
Q 041465 85 KHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLP-SSSVSFRNLTKLVAFGCKKLLHMVTS 163 (216)
Q Consensus 85 ~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~-~~~~~l~~L~~L~i~~C~~L~~l~~~ 163 (216)
..++.+++|++|+++++ .+....... .....+++|+.|++++|. ++.+.+ ..+..+++|++|+++++. ++...+.
T Consensus 91 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~ 166 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFC-GLSDAVLKD-GYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEH 166 (844)
T ss_dssp TSSCSCSSCCCEECTTC-CCSSCCSTT-CCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSG
T ss_pred hHccCCcccCEeeCcCC-CCCcccccC-ccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc-CCeeCHH
Confidence 23668999999999987 344311111 012368999999999986 444433 335679999999999874 5554332
Q ss_pred hHHhhc--cCCcEEEEecCcc
Q 041465 164 STAKTL--VQLVTVSICGCSA 182 (216)
Q Consensus 164 ~~~~~l--~~L~~L~i~~C~~ 182 (216)
....+ ++|+.|.+++|..
T Consensus 167 -~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 167 -ELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp -GGHHHHHCSSCCCEECCSBS
T ss_pred -HcccccCCccceEECCCCcc
Confidence 23334 7889999888853
No 79
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.20 E-value=1.2e-10 Score=90.83 Aligned_cols=132 Identities=19% Similarity=0.185 Sum_probs=103.4
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
.++|++|+++++.+..+.+..+ ..+++|++|++++|....+|.. .+..+++|++|++++|... .+.+ ..+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~-~l~~------~~~ 108 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVF--DSLINLKELYLGSNQLGALPVG-VFDSLTQLTVLDLGTNQLT-VLPS------AVF 108 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC-CCCT------TTT
T ss_pred CCCCCEEEcCCCccCccCHHHh--hCccCCcEEECCCCCCCCcChh-hcccCCCcCEEECCCCcCC-ccCh------hHh
Confidence 5799999999999887655443 3579999999999988888866 5568999999999998765 4332 224
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCC
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCK 155 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~ 155 (216)
..+++|+.|++++. +++.+... ...+++|+.|+++++ .++.+++..+..+++|++|++.+++
T Consensus 109 ~~l~~L~~L~Ls~N-~l~~lp~~----~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 109 DRLVHLKELFMCCN-KLTELPRG----IERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCTTCCEEECCSS-CCCSCCTT----GGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcchhhCeEeccCC-cccccCcc----cccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 57999999999886 56665322 246899999999987 5777766556678999999998765
No 80
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=8.4e-11 Score=97.72 Aligned_cols=157 Identities=14% Similarity=0.050 Sum_probs=109.3
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
.++++.|+++++++..+.+..+. ..+++|++|++++|....++.. .+..+++|++|++++|... .+.+ ..+
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~-~~l~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l~-~~~~------~~~ 108 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTP-TRLTNLHSLLLSHNHLNFISSE-AFVPVPNLRYLDLSSNHLH-TLDE------FLF 108 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSS-SCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCC-EECT------TTT
T ss_pred CCCCCEEECCCCCCCccChhhhh-hcccccCEEECCCCcCCccChh-hccCCCCCCEEECCCCcCC-cCCH------HHh
Confidence 45689999999888876655442 2478999999999987777654 4558899999999988765 4433 135
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCc---ccCCCccEEEEecCCCCcccCCch
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSS---VSFRNLTKLVAFGCKKLLHMVTSS 164 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~---~~l~~L~~L~i~~C~~L~~l~~~~ 164 (216)
..+++|+.|++++. ++..+....+ ..+++|+.|+++++. ++.+++..+ ..+++|++|+++++ +++.+. ..
T Consensus 109 ~~l~~L~~L~L~~N-~i~~~~~~~~---~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~-~~ 181 (361)
T 2xot_A 109 SDLQALEVLLLYNN-HIVVVDRNAF---EDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP-LT 181 (361)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCCC-HH
T ss_pred CCCcCCCEEECCCC-cccEECHHHh---CCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCccC-HH
Confidence 57899999999886 4666543322 357889999998874 666644412 35889999999986 477653 23
Q ss_pred HHhhccC--CcEEEEecC
Q 041465 165 TAKTLVQ--LVTVSICGC 180 (216)
Q Consensus 165 ~~~~l~~--L~~L~i~~C 180 (216)
....++. ++.|++.++
T Consensus 182 ~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp HHHHSCHHHHTTEECCSS
T ss_pred HhhhccHhhcceEEecCC
Confidence 4455555 477887764
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.19 E-value=1e-11 Score=101.14 Aligned_cols=183 Identities=17% Similarity=0.012 Sum_probs=121.9
Q ss_pred ccccccceEEcccccccccccCCCCcccc-----CCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccC
Q 041465 6 QIVPNLKELSLSGKDVKLILQADFPQHFF-----GSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEE 80 (216)
Q Consensus 6 ~~~p~Le~L~l~~~~l~~i~~~~~~~~~~-----~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~ 80 (216)
..+++|++|+++++.+..+ +..+ ..+ ++|++|++++|....++.. .+..+++|++|++++|... ...+..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~--~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~~~~~~ 192 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWL--AELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSDNPEL-GERGLI 192 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHH--HHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCSCTTC-HHHHHH
T ss_pred hcCCCccEEEccCCCCcch-hHHH--HHHHHhhcCCCcEEEeeCCCCccchHH-HhccCCCCCEEECCCCCcC-cchHHH
Confidence 3478999999999888775 3221 123 8999999999987666644 4458999999999999865 211100
Q ss_pred ccccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecC-CCcccCCCccEEEEecCCCCcc
Q 041465 81 GCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLP-SSSVSFRNLTKLVAFGCKKLLH 159 (216)
Q Consensus 81 ~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~-~~~~~l~~L~~L~i~~C~~L~~ 159 (216)
.....+.+++|++|+++++ ++..+..........+++|+.|+++++. ++...+ .....+++|++|++++|. ++.
T Consensus 193 --~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 267 (312)
T 1wwl_A 193 --SALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQ 267 (312)
T ss_dssp --HHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSC-CSS
T ss_pred --HHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCc-cCh
Confidence 0001257899999999987 4543211100111246899999999985 555432 223457899999999985 776
Q ss_pred cCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccC
Q 041465 160 MVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 160 l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~l 212 (216)
++. .. . ++|++|+++++. +..+.. - ..+++|++|++.+=
T Consensus 268 ip~-~~-~--~~L~~L~Ls~N~-l~~~p~--~-------~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 268 VPK-GL-P--AKLSVLDLSYNR-LDRNPS--P-------DELPQVGNLSLKGN 306 (312)
T ss_dssp CCS-SC-C--SEEEEEECCSSC-CCSCCC--T-------TTSCEEEEEECTTC
T ss_pred hhh-hc-c--CCceEEECCCCC-CCCChh--H-------hhCCCCCEEeccCC
Confidence 532 22 2 789999999984 554421 1 14788888888763
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.19 E-value=5.4e-12 Score=102.67 Aligned_cols=185 Identities=16% Similarity=0.044 Sum_probs=122.5
Q ss_pred ccccccceEEcccccccccccCC--CCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeE-eccCcc
Q 041465 6 QIVPNLKELSLSGKDVKLILQAD--FPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEV-FSEEGC 82 (216)
Q Consensus 6 ~~~p~Le~L~l~~~~l~~i~~~~--~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~-~~~~~~ 82 (216)
..+++|++|+++++.+....+.. .....+++|++|++++|....++.. .+..+++|++|++++|...... ++..
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-- 190 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAA-- 190 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTT--
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH-HhccCCCCCEEECCCCCCccchhhhHH--
Confidence 34789999999998876522110 0012478999999999987666654 4458999999999999764110 1100
Q ss_pred ccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccC---CCccEEEEecCCCCcc
Q 041465 83 LEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSF---RNLTKLVAFGCKKLLH 159 (216)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l---~~L~~L~i~~C~~L~~ 159 (216)
...+.+++|++|+++++ +++.+..........+++|++|+++++. ++...|.....+ ++|++|++++|. ++.
T Consensus 191 --~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~ 265 (310)
T 4glp_A 191 --LCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAG-LEQ 265 (310)
T ss_dssp --SCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSC-CCS
T ss_pred --HhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCC-CCc
Confidence 11246899999999987 4554422100011246899999999886 555533324444 799999999874 776
Q ss_pred cCCchHHhhccCCcEEEEecCccchhhccCCccccccceeecccccceecccC
Q 041465 160 MVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGVEKEEIVFCKLKALILSDL 212 (216)
Q Consensus 160 l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~l 212 (216)
++. .. .++|++|+++++. +..+.. ...+++|+.|++.+=
T Consensus 266 lp~-~~---~~~L~~L~Ls~N~-l~~~~~---------~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 266 VPK-GL---PAKLRVLDLSSNR-LNRAPQ---------PDELPEVDNLTLDGN 304 (310)
T ss_dssp CCS-CC---CSCCSCEECCSCC-CCSCCC---------TTSCCCCSCEECSST
T ss_pred hhh-hh---cCCCCEEECCCCc-CCCCch---------hhhCCCccEEECcCC
Confidence 532 22 2799999999985 544421 114789999988764
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.18 E-value=1.2e-10 Score=100.83 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=28.4
Q ss_pred CcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 119 QYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 119 ~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
++|+.|++++|. ++.++.. +..+++|++|++++| +++.++. .....+++|++|++++++
T Consensus 421 ~~L~~L~Ls~N~-l~~ip~~-~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 421 PRIKVLDLHSNK-IKSIPKQ-VVKLEALQELNVASN-QLKSVPD-GIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTCCEEECCSSC-CCCCCGG-GGGCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred ccCCEEECCCCc-ccccchh-hhcCCCCCEEECCCC-cCCccCH-HHhccCCcccEEECcCCC
Confidence 455555555552 4444332 345555555555555 2444322 223445555555555543
No 84
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.18 E-value=1.9e-10 Score=98.63 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=36.7
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
+++|++|+++++.+..+ ++ ...+++|++|++++|....+|.. .+++|++|++++|...
T Consensus 41 l~~L~~L~Ls~n~l~~~-~~---l~~l~~L~~L~Ls~n~l~~~~~~----~l~~L~~L~Ls~N~l~ 98 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-TG---IEKLTGLTKLICTSNNITTLDLS----QNTNLTYLACDSNKLT 98 (457)
T ss_dssp HTTCCEEECCSSCCCCC-TT---GGGCTTCSEEECCSSCCSCCCCT----TCTTCSEEECCSSCCS
T ss_pred cCCCCEEEccCCCcccC-hh---hcccCCCCEEEccCCcCCeEccc----cCCCCCEEECcCCCCc
Confidence 57777777777666653 21 13467777777777765555533 6677777777666544
No 85
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.18 E-value=7.3e-11 Score=104.57 Aligned_cols=146 Identities=16% Similarity=0.228 Sum_probs=114.2
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|+.|+|+++.+..+.+ ...+++|+.|++++|....+|. +..+++|++|++++|... .+ + .+
T Consensus 64 l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l~~---l~~l~~L~~L~Ls~N~l~-~l-~-------~l 127 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENKIKDLSS---LKDLKKLKSLSLEHNGIS-DI-N-------GL 127 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCTT---STTCTTCCEEECTTSCCC-CC-G-------GG
T ss_pred CCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCCCCCChh---hccCCCCCEEEecCCCCC-CC-c-------cc
Confidence 7999999999988877543 3468999999999998766663 348999999999998766 32 2 25
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
..+++|+.|+++++ .+..+ .....+++|+.|++++|. +..+.+ +..+++|+.|++++|. +..+ ....
T Consensus 128 ~~l~~L~~L~Ls~N-~l~~l-----~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~-i~~l---~~l~ 194 (605)
T 1m9s_A 128 VHLPQLESLYLGNN-KITDI-----TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNH-ISDL---RALA 194 (605)
T ss_dssp GGCTTCSEEECCSS-CCCCC-----GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSC-CCBC---GGGT
T ss_pred cCCCccCEEECCCC-ccCCc-----hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCC-CCCC---hHHc
Confidence 57999999999987 45554 122468999999999985 666544 5679999999999984 7765 2356
Q ss_pred hccCCcEEEEecCcc
Q 041465 168 TLVQLVTVSICGCSA 182 (216)
Q Consensus 168 ~l~~L~~L~i~~C~~ 182 (216)
.+++|+.|++++|+-
T Consensus 195 ~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 195 GLKNLDVLELFSQEC 209 (605)
T ss_dssp TCTTCSEEECCSEEE
T ss_pred cCCCCCEEEccCCcC
Confidence 789999999998864
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.18 E-value=3e-10 Score=93.91 Aligned_cols=153 Identities=12% Similarity=0.048 Sum_probs=97.3
Q ss_pred ceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccc
Q 041465 12 KELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLA 91 (216)
Q Consensus 12 e~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~ 91 (216)
++++-++++++.|. .+..+++++|+++++....+|.+ .+..+++|++|++++|... +.++. ..+..++
T Consensus 12 ~~v~C~~~~Lt~iP-----~~l~~~l~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~i~-~~i~~-----~~f~~L~ 79 (350)
T 4ay9_X 12 RVFLCQESKVTEIP-----SDLPRNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVL-EVIEA-----DVFSNLP 79 (350)
T ss_dssp TEEEEESTTCCSCC-----TTCCTTCSEEEEESCCCSEECTT-SSTTCTTCCEEEEECCTTC-CEECT-----TSBCSCT
T ss_pred CEEEecCCCCCccC-----cCcCCCCCEEEccCCcCCCcCHH-HHcCCCCCCEEECcCCCCC-CccCh-----hHhhcch
Confidence 34555556676643 23347899999999998889876 5668999999999999887 44442 1245677
Q ss_pred cccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccC
Q 041465 92 MIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQ 171 (216)
Q Consensus 92 ~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~ 171 (216)
+++++.+.+..+++.+..+.+ ..+++|++|+++++. ++.+++.......++..+++.++.+++.+...........
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f---~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~ 155 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAF---QNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSB---CCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred hhhhhhcccCCcccccCchhh---hhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchh
Confidence 888777766677777754433 246777788777764 4444443233445566677766666665543222222234
Q ss_pred CcEEEEecC
Q 041465 172 LVTVSICGC 180 (216)
Q Consensus 172 L~~L~i~~C 180 (216)
++.|+++++
T Consensus 156 l~~L~L~~N 164 (350)
T 4ay9_X 156 SVILWLNKN 164 (350)
T ss_dssp CEEEECCSS
T ss_pred hhhhccccc
Confidence 555555554
No 87
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.18 E-value=1.5e-10 Score=89.80 Aligned_cols=133 Identities=16% Similarity=0.236 Sum_probs=101.5
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
.+++++|+++++.++.+.+..+ ..+++|++|++++|....++.. .+..+++|++|++++|... .+.+ ..+
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~--~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~-~l~~------~~f 100 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAF--SPYKKLRRIDLSNNQISELAPD-AFQGLRSLNSLVLYGNKIT-ELPK------SLF 100 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECCSSCCCEECTT-TTTTCSSCCEEECCSSCCC-CCCT------TTT
T ss_pred CcCCCEEECCCCcCCCcCHhHh--hCCCCCCEEECCCCcCCCcCHH-HhhCCcCCCEEECCCCcCC-ccCH------hHc
Confidence 4689999999999888665444 3588999999999987666433 3458999999999998766 4322 124
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCC
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCK 155 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~ 155 (216)
..+++|+.|++++. ++..+....+ ..+++|+.|+++++. ++.+++..+..+++|++|++++++
T Consensus 101 ~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 101 EGLFSLQLLLLNAN-KINCLRVDAF---QDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCC-CCCEeCHHHc---CCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 57899999999986 5666543322 358899999999975 777766556678999999998765
No 88
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.17 E-value=1.2e-10 Score=95.39 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=103.3
Q ss_pred ccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccc
Q 041465 10 NLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGK 89 (216)
Q Consensus 10 ~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~ 89 (216)
+++.+++++++++.+. ...+++|++|++++|....++.. .+..+++|++|++++|... .+.+ ..++.
T Consensus 34 ~l~~l~~~~~~l~~ip-----~~~~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~-~~~~------~~~~~ 100 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP-----KEISPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKIS-KIHE------KAFSP 100 (332)
T ss_dssp ETTEEECCSSCCSSCC-----SCCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCC-EECG------GGSTT
T ss_pred cCCEEECCCCCccccC-----CCCCCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccC-ccCH------hHhhC
Confidence 6899999888777643 23357999999999987667654 4468999999999998766 5544 23567
Q ss_pred cccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCccc-CCchHHhh
Q 041465 90 LAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHM-VTSSTAKT 168 (216)
Q Consensus 90 l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l-~~~~~~~~ 168 (216)
+++|++|++++. .+..+... .+++|++|+++++. ++.+++..+..+++|++|+++++. ++.. ..+.....
T Consensus 101 l~~L~~L~L~~n-~l~~l~~~------~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~ 171 (332)
T 2ft3_A 101 LRKLQKLYISKN-HLVEIPPN------LPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDG 171 (332)
T ss_dssp CTTCCEEECCSS-CCCSCCSS------CCTTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCS
T ss_pred cCCCCEEECCCC-cCCccCcc------ccccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccC
Confidence 899999999886 45554321 23789999998875 555655445678899999998875 4321 11122233
Q ss_pred ccCCcEEEEecCc
Q 041465 169 LVQLVTVSICGCS 181 (216)
Q Consensus 169 l~~L~~L~i~~C~ 181 (216)
+ +|++|+++++.
T Consensus 172 l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 172 L-KLNYLRISEAK 183 (332)
T ss_dssp C-CCSCCBCCSSB
T ss_pred C-ccCEEECcCCC
Confidence 4 67777777664
No 89
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.17 E-value=1.2e-10 Score=102.58 Aligned_cols=133 Identities=14% Similarity=0.091 Sum_probs=106.2
Q ss_pred CCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCccc
Q 041465 35 GSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKL 114 (216)
Q Consensus 35 ~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~ 114 (216)
+++++|+++++....+|.. .+.++++|++|++++|... .+.+ .+++.+++|++|+++++ +++.+..+.+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~-~f~~l~~L~~L~Ls~N~i~-~i~~------~~f~~L~~L~~L~Ls~N-~l~~l~~~~f-- 120 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQ-TIED------GAYQSLSHLSTLILTGN-PIQSLALGAF-- 120 (635)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCC-EECT------TTTTTCTTCCEEECTTC-CCCEECGGGG--
T ss_pred cCCCEEEeeCCCCCCCCHH-HHhCCCCCCEEECCCCcCC-CcCh------hHhcCCCCCCEEEccCC-cCCCCCHHHh--
Confidence 5899999999988888765 4569999999999999766 5543 23668999999999997 5887755433
Q ss_pred CCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 115 GPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 115 ~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
..+++|++|++++|. ++.+++..+..+++|++|+++++. ++.+..+.....+++|++|+++++.
T Consensus 121 -~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 121 -SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp -TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred -cCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcc
Confidence 358999999999984 777776656789999999999875 6554444566789999999999874
No 90
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.16 E-value=8.5e-11 Score=100.82 Aligned_cols=57 Identities=16% Similarity=0.063 Sum_probs=33.3
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCC-CCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDN-SACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~-~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
+++|++|+++++.++.+ +...+++|++|++++|. ...++.. .+++|++|++++|...
T Consensus 126 l~~L~~L~l~~N~l~~l-----~l~~l~~L~~L~l~~n~~~~~~~~~----~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTEI-----DVSHNTQLTELDCHLNKKITKLDVT----PQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CTTCCEEECTTSCCSCC-----CCTTCTTCCEEECTTCSCCCCCCCT----TCTTCCEEECCSSCCC
T ss_pred CCcCCEEECCCCcccee-----ccccCCcCCEEECCCCCcccccccc----cCCcCCEEECCCCccc
Confidence 45555555555554442 12346677777777773 3444432 6677777777776544
No 91
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.15 E-value=2.5e-10 Score=88.46 Aligned_cols=134 Identities=15% Similarity=0.211 Sum_probs=102.4
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
.+.+++|+++++.++.+.+... ...+++|++|++++|....++.. .+..+++|++|++++|... .+.+ ..+
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~-~~~l~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l~-~~~~------~~~ 101 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGI-FKKLPQLRKINFSNNKITDIEEG-AFEGASGVNEILLTSNRLE-NVQH------KMF 101 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCC-GGGCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCC-CCCG------GGG
T ss_pred CCCCCEEEcCCCcCCccCchhh-hccCCCCCEEECCCCcCCEECHH-HhCCCCCCCEEECCCCccC-ccCH------hHh
Confidence 4579999999998887643211 13589999999999988777765 4568999999999998776 4433 235
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCC
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCK 155 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~ 155 (216)
+.+++|++|++++. ++..+....+ ..+++|+.|+++++. ++.+.|..+..+++|++|++++++
T Consensus 102 ~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 102 KGLESLKTLMLRSN-RITCVGNDSF---IGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCSSCCEEECTTS-CCCCBCTTSS---TTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred cCCcCCCEEECCCC-cCCeECHhHc---CCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 67999999999986 4665543322 358999999999874 777766657789999999999875
No 92
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.13 E-value=8.2e-11 Score=104.82 Aligned_cols=187 Identities=12% Similarity=0.062 Sum_probs=123.9
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhC-------CCCcEEEEeecCCceeEeccC
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERF-------HNLEKLILVCFSFNEEVFSEE 80 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l-------~~L~~L~i~~c~~~e~~~~~~ 80 (216)
+++|++|+++++.+..+....+ ..+++|++|++++|....+|.+ ..... ++|++|++++|... .+ |.
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~--~~l~~L~~L~Ls~N~l~~i~~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l-p~- 505 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELF--STGSPLSSINLMGNMLTEIPKN-SLKDENENFKNTYLLTSIDLRFNKLT-KL-SD- 505 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHH--HTTCCCSEEECCSSCCSBCCSS-SSEETTEECTTGGGCCEEECCSSCCC-BC-CG-
T ss_pred CCCCCEEECcCCccCcCCHHHH--ccCCCCCEEECCCCCCCCcCHH-HhccccccccccCCccEEECcCCcCC-cc-Ch-
Confidence 4589999999988876432211 2378999999999987788876 44333 29999999998766 43 31
Q ss_pred cccccccc--ccccccEEecCcccccceecccCcccCCcCCcccEEEEecCc-----CceeecCCCcccCCCccEEEEec
Q 041465 81 GCLEKHVG--KLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQ-----SLLILLPSSSVSFRNLTKLVAFG 153 (216)
Q Consensus 81 ~~~~~~~~--~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~-----~L~~l~~~~~~~l~~L~~L~i~~ 153 (216)
.+. .+++|+.|+++++ ++..+.. ....+++|+.|++++|. .+....|.++..+++|++|++++
T Consensus 506 -----~~~~~~l~~L~~L~Ls~N-~l~~ip~----~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 506 -----DFRATTLPYLVGIDLSYN-SFSKFPT----QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp -----GGSTTTCTTCCEEECCSS-CCSSCCC----GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred -----hhhhccCCCcCEEECCCC-CCCCcCh----hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence 233 7999999999986 4555422 22368999999996533 23333455477899999999999
Q ss_pred CCCCcccCCchHHhhccCCcEEEEecCccchhhccCCcccc-ccceeecccccceecccCCCCC
Q 041465 154 CKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKEGV-EKEEIVFCKLKALILSDLESLT 216 (216)
Q Consensus 154 C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~-~~~~~~~~~L~~L~l~~lp~L~ 216 (216)
|. ++.++. .. .++|++|++++|+.. .+-....... ......+...+..++.+||.|.
T Consensus 576 N~-l~~ip~-~~---~~~L~~L~Ls~N~l~-~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 576 ND-IRKVNE-KI---TPNISVLDIKDNPNI-SIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp SC-CCBCCS-CC---CTTCCEEECCSCTTC-EEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred Cc-CCccCH-hH---hCcCCEEECcCCCCc-cccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 86 566643 22 279999999999743 2211110000 0111234455667788888763
No 93
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.12 E-value=6.6e-10 Score=101.95 Aligned_cols=148 Identities=14% Similarity=0.085 Sum_probs=106.6
Q ss_pred EcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccccccccccc
Q 041465 15 SLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIK 94 (216)
Q Consensus 15 ~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~ 94 (216)
+-++.+++.+. . ..++|+.|++++|....++.. .+..+++|++|++++|.....+.+ ..++.+++|+
T Consensus 10 dcs~~~L~~vP-----~-lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~------~~f~~L~~L~ 76 (844)
T 3j0a_A 10 FYRFCNLTQVP-----Q-VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDK------EAFRNLPNLR 76 (844)
T ss_dssp EESCCCSSCCC-----S-SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECT------TTTSSCTTCC
T ss_pred EccCCCCCCCC-----C-CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCH------HHhcCCCCCC
Confidence 33445666543 2 347899999999977555433 345899999999999866523323 2466899999
Q ss_pred EEecCcccccceecccCcccCCcCCcccEEEEecCcCcee-ecC-CCcccCCCccEEEEecCCCCcccCCchHHhhccCC
Q 041465 95 TLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLI-LLP-SSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQL 172 (216)
Q Consensus 95 ~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~-l~~-~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L 172 (216)
.|+++++ ++..+....+ ..+++|++|++++|. +.. .++ ..+..+++|++|++++|. ++.+.++.....+++|
T Consensus 77 ~L~Ls~N-~l~~~~p~~~---~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 77 ILDLGSS-KIYFLHPDAF---QGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSL 150 (844)
T ss_dssp EEECTTC-CCCEECTTSS---CSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSC
T ss_pred EEECCCC-cCcccCHhHc---cCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCC
Confidence 9999987 4666544333 368999999999985 443 222 125679999999999985 6665444456789999
Q ss_pred cEEEEecCc
Q 041465 173 VTVSICGCS 181 (216)
Q Consensus 173 ~~L~i~~C~ 181 (216)
++|+++++.
T Consensus 151 ~~L~Ls~N~ 159 (844)
T 3j0a_A 151 KSIDFSSNQ 159 (844)
T ss_dssp CEEEEESSC
T ss_pred CEEECCCCc
Confidence 999999985
No 94
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.11 E-value=5.2e-10 Score=92.89 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=114.7
Q ss_pred cceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHh-hCCCCcEEEEeecCCceeEeccCccccccccc
Q 041465 11 LKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLE-RFHNLEKLILVCFSFNEEVFSEEGCLEKHVGK 89 (216)
Q Consensus 11 Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~-~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~ 89 (216)
-+.++.++++++.+. ....+.++.|++++|....++.. .+. .+++|++|++++|... .+.+ ..+..
T Consensus 20 ~~~l~c~~~~l~~iP-----~~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~-~i~~------~~~~~ 86 (361)
T 2xot_A 20 SNILSCSKQQLPNVP-----QSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLN-FISS------EAFVP 86 (361)
T ss_dssp TTEEECCSSCCSSCC-----SSCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCC-EECT------TTTTT
T ss_pred CCEEEeCCCCcCccC-----ccCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCC-ccCh------hhccC
Confidence 357788877777643 23346799999999988777765 444 7899999999998776 5543 23567
Q ss_pred cccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHH---
Q 041465 90 LAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTA--- 166 (216)
Q Consensus 90 l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~--- 166 (216)
+++|+.|++++. +++.+....+ ..+++|+.|+++++. ++.+.+..+..+++|++|+++++. ++.+.. ...
T Consensus 87 l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~-~~~~~~ 159 (361)
T 2xot_A 87 VPNLRYLDLSSN-HLHTLDEFLF---SDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPV-ELIKDG 159 (361)
T ss_dssp CTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCG-GGTC--
T ss_pred CCCCCEEECCCC-cCCcCCHHHh---CCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCH-HHhcCc
Confidence 999999999986 5777654332 358999999999976 666766657789999999999874 777543 232
Q ss_pred hhccCCcEEEEecCccchhh
Q 041465 167 KTLVQLVTVSICGCSAMTEV 186 (216)
Q Consensus 167 ~~l~~L~~L~i~~C~~l~~i 186 (216)
..+++|+.|+++++. +..+
T Consensus 160 ~~l~~L~~L~L~~N~-l~~l 178 (361)
T 2xot_A 160 NKLPKLMLLDLSSNK-LKKL 178 (361)
T ss_dssp --CTTCCEEECCSSC-CCCC
T ss_pred ccCCcCCEEECCCCC-CCcc
Confidence 468999999999874 4433
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.11 E-value=3.7e-10 Score=98.91 Aligned_cols=156 Identities=12% Similarity=0.087 Sum_probs=91.4
Q ss_pred cccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChH-HHHhhCCCCcEEEEeecCCceeEeccCccccc
Q 041465 7 IVPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIW-NVLERFHNLEKLILVCFSFNEEVFSEEGCLEK 85 (216)
Q Consensus 7 ~~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~-~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~ 85 (216)
.+++|++|+++++.+....+..+ ..+++|++|++++|....++.. ..+..+++|++|++++|... ..++. .
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~-----~ 422 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGC--STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN-SHAYD-----R 422 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTC--CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB-SCCSS-----C
T ss_pred CCCCceEEECCCCccccchhhhh--cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC-CccCh-----h
Confidence 35667777777666554333222 2466777777777765444421 01346677777777776654 21221 1
Q ss_pred cccccccccEEecCcccccceecccCcccCCcC-CcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCch
Q 041465 86 HVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIF-QYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSS 164 (216)
Q Consensus 86 ~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l-~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~ 164 (216)
.+..+++|+.|+++++. +... .+. .+ ++|+.|++++| .++.+++. +..+++|++|+++++. ++.++. .
T Consensus 423 ~~~~l~~L~~L~l~~n~-l~~~---~~~---~l~~~L~~L~L~~N-~l~~ip~~-~~~l~~L~~L~L~~N~-l~~l~~-~ 491 (562)
T 3a79_B 423 TCAWAESILVLNLSSNM-LTGS---VFR---CLPPKVKVLDLHNN-RIMSIPKD-VTHLQALQELNVASNQ-LKSVPD-G 491 (562)
T ss_dssp CCCCCTTCCEEECCSSC-CCGG---GGS---SCCTTCSEEECCSS-CCCCCCTT-TTSSCCCSEEECCSSC-CCCCCT-T
T ss_pred hhcCcccCCEEECCCCC-CCcc---hhh---hhcCcCCEEECCCC-cCcccChh-hcCCCCCCEEECCCCC-CCCCCH-H
Confidence 23456777777777653 2211 011 12 57888888877 46666554 5577888888888764 666532 2
Q ss_pred HHhhccCCcEEEEecCc
Q 041465 165 TAKTLVQLVTVSICGCS 181 (216)
Q Consensus 165 ~~~~l~~L~~L~i~~C~ 181 (216)
....+++|++|++++++
T Consensus 492 ~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp STTTCTTCCCEECCSCC
T ss_pred HHhcCCCCCEEEecCCC
Confidence 34567788888877754
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.11 E-value=6.3e-11 Score=94.35 Aligned_cols=144 Identities=16% Similarity=0.243 Sum_probs=96.0
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+++|++|+++++++..+. . ...+++|++|++++|....+|. +..+++|++|++++|... .+ +. .
T Consensus 40 l~~L~~L~l~~n~i~~l~--~--l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~-~l-~~-------~ 103 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA--G--MQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLK-NL-NG-------I 103 (263)
T ss_dssp HTTCSEEECTTSCCCCCT--T--GGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCS-CC-TT-------C
T ss_pred cCcCcEEECcCCCcccch--H--HhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccC-Cc-Cc-------c
Confidence 577888888887766532 1 2347788888888886655553 247788888888877655 32 21 1
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
.. ++|+.|+++++ ++..+. ....+++|+.|+++++. ++.++ . +..+++|++|++++|. ++.+ ....
T Consensus 104 ~~-~~L~~L~L~~N-~l~~~~-----~l~~l~~L~~L~Ls~N~-i~~~~-~-l~~l~~L~~L~L~~N~-i~~~---~~l~ 169 (263)
T 1xeu_A 104 PS-ACLSRLFLDNN-ELRDTD-----SLIHLKNLEILSIRNNK-LKSIV-M-LGFLSKLEVLDLHGNE-ITNT---GGLT 169 (263)
T ss_dssp CC-SSCCEEECCSS-CCSBSG-----GGTTCTTCCEEECTTSC-CCBCG-G-GGGCTTCCEEECTTSC-CCBC---TTST
T ss_pred cc-CcccEEEccCC-ccCCCh-----hhcCcccccEEECCCCc-CCCCh-H-HccCCCCCEEECCCCc-Ccch---HHhc
Confidence 12 77888888776 455431 12357888888888774 55553 2 5678888888888874 5554 2345
Q ss_pred hccCCcEEEEecCc
Q 041465 168 TLVQLVTVSICGCS 181 (216)
Q Consensus 168 ~l~~L~~L~i~~C~ 181 (216)
.+++|+.|++++++
T Consensus 170 ~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 170 RLKKVNWIDLTGQK 183 (263)
T ss_dssp TCCCCCEEEEEEEE
T ss_pred cCCCCCEEeCCCCc
Confidence 67888888888775
No 97
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.10 E-value=1.7e-09 Score=93.55 Aligned_cols=145 Identities=12% Similarity=0.015 Sum_probs=105.6
Q ss_pred ceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccc
Q 041465 12 KELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLA 91 (216)
Q Consensus 12 e~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~ 91 (216)
++|++++++++.+.. ..+++|++|++++|....++.. .+..+++|++|++++|... .+.+ ..++.++
T Consensus 3 ~~l~ls~n~l~~ip~-----~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~-~~~~------~~~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPK-----DLSQKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQ-YLDI------SVFKFNQ 69 (520)
T ss_dssp CEEECTTSCCSSCCC-----SCCTTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCC-EEEG------GGGTTCT
T ss_pred ceEecCCCCcccccc-----cccccccEEECCCCcccccChh-hccccccccEEecCCCccC-CcCh------HHhhccc
Confidence 468888888876432 2237899999999987777655 4568999999999998766 5544 2356789
Q ss_pred cccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceee-cCCCcccCCCccEEEEecCCCCcccCCchHHhhcc
Q 041465 92 MIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLIL-LPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLV 170 (216)
Q Consensus 92 ~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l-~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~ 170 (216)
+|++|++++. +++.+... .+++|++|++++|. ++.+ .|..+..+++|++|+++++. ++. .....++
T Consensus 70 ~L~~L~Ls~N-~l~~lp~~------~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~----~~~~~l~ 136 (520)
T 2z7x_B 70 ELEYLDLSHN-KLVKISCH------PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK----SSVLPIA 136 (520)
T ss_dssp TCCEEECCSS-CCCEEECC------CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG----GGGGGGT
T ss_pred CCCEEecCCC-ceeecCcc------ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch----hhccccc
Confidence 9999999886 56666432 57899999999886 4432 24446778999999999875 443 2345667
Q ss_pred CC--cEEEEecCcc
Q 041465 171 QL--VTVSICGCSA 182 (216)
Q Consensus 171 ~L--~~L~i~~C~~ 182 (216)
+| ++|++++|..
T Consensus 137 ~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 137 HLNISKVLLVLGET 150 (520)
T ss_dssp TSCEEEEEEEECTT
T ss_pred cceeeEEEeecccc
Confidence 77 9999988864
No 98
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.09 E-value=1.4e-09 Score=96.59 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=20.2
Q ss_pred cccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcC
Q 041465 7 IVPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFP 51 (216)
Q Consensus 7 ~~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p 51 (216)
.+++|++|+++++.++.+.. .+++|++|++++|....+|
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l~~l~ 117 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV------LPPGLLELSIFSNPLTHLP 117 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC------CCTTCCEEEECSCCCCCCC
T ss_pred cCCCCCEEEcCCCcCCcCCC------CCCCCCEEECcCCcCCCCC
Confidence 34566666666655554321 3455555555555443333
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.07 E-value=8.5e-10 Score=87.78 Aligned_cols=144 Identities=22% Similarity=0.263 Sum_probs=103.2
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+.++..+.++++.++.+. ....+++|+.|++++|....+| + + ..+++|++|++++|... .+.+ +
T Consensus 18 l~~l~~l~l~~~~i~~~~----~~~~l~~L~~L~l~~n~i~~l~-~-l-~~l~~L~~L~L~~N~i~-~~~~--------l 81 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV----SQKELSGVQNFNGDNSNIQSLA-G-M-QFFTNLKELHLSHNQIS-DLSP--------L 81 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE----CHHHHTTCSEEECTTSCCCCCT-T-G-GGCTTCCEEECCSSCCC-CCGG--------G
T ss_pred HHHHHHHHhcCCCccccc----chhhcCcCcEEECcCCCcccch-H-H-hhCCCCCEEECCCCccC-CChh--------h
Confidence 456677777776666543 1245889999999999777777 3 3 48899999999888655 3321 4
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHh
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAK 167 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 167 (216)
..+++|+.|+++++ +++.+.. . .. ++|+.|++++|. ++.+ +. +..+++|++|+++++. ++.+. ...
T Consensus 82 ~~l~~L~~L~L~~N-~l~~l~~----~-~~-~~L~~L~L~~N~-l~~~-~~-l~~l~~L~~L~Ls~N~-i~~~~---~l~ 147 (263)
T 1xeu_A 82 KDLTKLEELSVNRN-RLKNLNG----I-PS-ACLSRLFLDNNE-LRDT-DS-LIHLKNLEILSIRNNK-LKSIV---MLG 147 (263)
T ss_dssp TTCSSCCEEECCSS-CCSCCTT----C-CC-SSCCEEECCSSC-CSBS-GG-GTTCTTCCEEECTTSC-CCBCG---GGG
T ss_pred ccCCCCCEEECCCC-ccCCcCc----c-cc-CcccEEEccCCc-cCCC-hh-hcCcccccEEECCCCc-CCCCh---HHc
Confidence 57899999999886 4555421 1 12 789999999884 6655 33 5678899999999874 77652 356
Q ss_pred hccCCcEEEEecCc
Q 041465 168 TLVQLVTVSICGCS 181 (216)
Q Consensus 168 ~l~~L~~L~i~~C~ 181 (216)
.+++|++|++++|.
T Consensus 148 ~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 148 FLSKLEVLDLHGNE 161 (263)
T ss_dssp GCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCCc
Confidence 78899999998885
No 100
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=3.5e-10 Score=103.98 Aligned_cols=153 Identities=12% Similarity=0.113 Sum_probs=106.4
Q ss_pred cccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhh-------CCCCcEEEEeecCCceeEeccCc
Q 041465 9 PNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLER-------FHNLEKLILVCFSFNEEVFSEEG 81 (216)
Q Consensus 9 p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~-------l~~L~~L~i~~c~~~e~~~~~~~ 81 (216)
++|++|+++++.+..+....+ ..+++|+.|++++|....+|.+ .... +++|++|++++|... .+ |.
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~--~~l~~L~~L~Ls~N~L~~ip~~-~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l-p~-- 745 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELF--ATGSPISTIILSNNLMTSIPEN-SLKPKDGNYKNTYLLTTIDLRFNKLT-SL-SD-- 745 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHH--HTTCCCSEEECCSCCCSCCCTT-SSSCTTSCCTTGGGCCEEECCSSCCC-CC-CG--
T ss_pred CCcCEEEccCCcCCccCHHHH--ccCCCCCEEECCCCcCCccChH-HhccccccccccCCccEEECCCCCCc-cc-hH--
Confidence 367777777766654321110 1368999999999987788876 4322 239999999999765 33 31
Q ss_pred ccccccc--ccccccEEecCcccccceecccCcccCCcCCcccEEEEecCc-----CceeecCCCcccCCCccEEEEecC
Q 041465 82 CLEKHVG--KLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQ-----SLLILLPSSSVSFRNLTKLVAFGC 154 (216)
Q Consensus 82 ~~~~~~~--~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~-----~L~~l~~~~~~~l~~L~~L~i~~C 154 (216)
.+. .+++|+.|+++++ ++..+.. ....+++|+.|++++|+ ++....|..+..+++|++|++++|
T Consensus 746 ----~l~~~~l~~L~~L~Ls~N-~L~~lp~----~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 746 ----DFRATTLPYLSNMDVSYN-CFSSFPT----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp ----GGSTTTCTTCCEEECCSS-CCSSCCC----GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred ----HhhhccCCCcCEEEeCCC-CCCccch----hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 233 7899999999986 4555422 22368999999998743 334344555778999999999998
Q ss_pred CCCcccCCchHHhhccCCcEEEEecCcc
Q 041465 155 KKLLHMVTSSTAKTLVQLVTVSICGCSA 182 (216)
Q Consensus 155 ~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 182 (216)
. +..++. .. .++|+.|++++|+.
T Consensus 817 ~-L~~Ip~-~l---~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 817 D-IRKVDE-KL---TPQLYILDIADNPN 839 (876)
T ss_dssp C-CCBCCS-CC---CSSSCEEECCSCTT
T ss_pred C-CCccCH-hh---cCCCCEEECCCCCC
Confidence 6 566543 22 26899999999974
No 101
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.03 E-value=2.8e-10 Score=84.17 Aligned_cols=136 Identities=24% Similarity=0.204 Sum_probs=73.9
Q ss_pred cCCccEEEEecCCCC--CcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccC
Q 041465 34 FGSLRELEIAEDNSA--CFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQD 111 (216)
Q Consensus 34 ~~~L~~L~i~~c~~~--~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~ 111 (216)
.++|+.|++++|... .+|.. + ..+++|++|++++|... .+ + .++.+++|+.|+++++. +.....
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~-~~l~~L~~L~l~~n~l~-~~-~-------~~~~l~~L~~L~Ls~N~-l~~~~~-- 88 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-T-AEFVNLEFLSLINVGLI-SV-S-------NLPKLPKLKKLELSENR-IFGGLD-- 88 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-C-GGGGGCCEEEEESSCCC-CC-S-------SCCCCSSCCEEEEESCC-CCSCCC--
T ss_pred cccCCEEECCCCCCChhhHHHH-H-HhCCCCCEEeCcCCCCC-Ch-h-------hhccCCCCCEEECcCCc-CchHHH--
Confidence 355666666666443 55543 2 35666666666665533 22 1 23345666666665542 222100
Q ss_pred cccCCcCCcccEEEEecCcCceeecC-CCcccCCCccEEEEecCCCCcccCC--chHHhhccCCcEEEEecCccchhhc
Q 041465 112 SKLGPIFQYLEILKVYHCQSLLILLP-SSSVSFRNLTKLVAFGCKKLLHMVT--SSTAKTLVQLVTVSICGCSAMTEVV 187 (216)
Q Consensus 112 ~~~~~~l~~L~~L~i~~c~~L~~l~~-~~~~~l~~L~~L~i~~C~~L~~l~~--~~~~~~l~~L~~L~i~~C~~l~~i~ 187 (216)
.....+++|+.|++++|. ++.++. ..+..+++|++|++++|+ +..+.+ ......+++|++|++.+|. ..++.
T Consensus 89 -~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 89 -MLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp -HHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred -HHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 011135666666666663 444321 224567888888888874 555432 1245678888888888886 33443
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.01 E-value=4.3e-10 Score=83.13 Aligned_cols=132 Identities=20% Similarity=0.186 Sum_probs=96.8
Q ss_pred cccccceEEccccccc--ccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccc
Q 041465 7 IVPNLKELSLSGKDVK--LILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLE 84 (216)
Q Consensus 7 ~~p~Le~L~l~~~~l~--~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~ 84 (216)
..++|++|+++++.+. .+ +..+ ..+++|++|++++|....++ .+..+++|++|++++|... ..++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i-~~~~--~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~Ls~N~l~-~~~~------ 88 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKI-EGLT--AEFVNLEFLSLINVGLISVS---NLPKLPKLKKLELSENRIF-GGLD------ 88 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBC-SSCC--GGGGGCCEEEEESSCCCCCS---SCCCCSSCCEEEEESCCCC-SCCC------
T ss_pred CcccCCEEECCCCCCChhhH-HHHH--HhCCCCCEEeCcCCCCCChh---hhccCCCCCEEECcCCcCc-hHHH------
Confidence 3588999999998876 43 2222 45899999999999765553 3358999999999999876 4333
Q ss_pred ccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecC---CCcccCCCccEEEEecCC
Q 041465 85 KHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLP---SSSVSFRNLTKLVAFGCK 155 (216)
Q Consensus 85 ~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~---~~~~~l~~L~~L~i~~C~ 155 (216)
...+.+++|+.|+++++ ++..+... .....+++|+.|++++|+ +..+++ ..+..+++|++|++++|.
T Consensus 89 ~~~~~l~~L~~L~Ls~N-~l~~~~~~--~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGN-KLKDISTL--EPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHHHCTTCCEEECBSS-SCCSSGGG--GGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HHHhhCCCCCEEeccCC-ccCcchhH--HHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 12345999999999987 56654321 122468999999999985 555544 235679999999999986
No 103
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.00 E-value=9.7e-11 Score=102.76 Aligned_cols=37 Identities=11% Similarity=-0.088 Sum_probs=18.3
Q ss_pred CCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecC
Q 041465 143 FRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGC 180 (216)
Q Consensus 143 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 180 (216)
+++|++|++++|. +...........+++|++|++.+|
T Consensus 288 ~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 288 CSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 4566666666655 332111122335556666666655
No 104
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.98 E-value=6.6e-09 Score=90.95 Aligned_cols=149 Identities=11% Similarity=0.036 Sum_probs=107.6
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
+...+++++++++++.+.. ..+++|+.|++++|....+|.. .+..+++|++|++++|... .+.+ ..+
T Consensus 30 ~~~~~~l~ls~~~L~~ip~-----~~~~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~-~~~~------~~~ 96 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPK-----DLPPRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIR-SLDF------HVF 96 (562)
T ss_dssp ---CCEEECTTSCCCSCCT-----TSCTTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCC-EECT------TTT
T ss_pred cCCCcEEEcCCCCCccCCC-----CCCCCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCC-cCCH------HHh
Confidence 3455789999888887432 2347999999999987777654 4568999999999998766 5544 235
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeec-CCCcccCCCccEEEEecCCCCcccCCchHH
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILL-PSSSVSFRNLTKLVAFGCKKLLHMVTSSTA 166 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~-~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~ 166 (216)
+.+++|++|++++. +++.+... .+++|++|++++|. ++.++ |..+..+++|++|+++++. ++.. ..
T Consensus 97 ~~l~~L~~L~Ls~N-~l~~lp~~------~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~----~~ 163 (562)
T 3a79_B 97 LFNQDLEYLDVSHN-RLQNISCC------PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQL----DL 163 (562)
T ss_dssp TTCTTCCEEECTTS-CCCEECSC------CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCTT----TT
T ss_pred CCCCCCCEEECCCC-cCCccCcc------ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-cccC----ch
Confidence 67899999999986 47776432 58899999999986 55543 3446788999999999864 4432 22
Q ss_pred hhccCC--cEEEEecCcc
Q 041465 167 KTLVQL--VTVSICGCSA 182 (216)
Q Consensus 167 ~~l~~L--~~L~i~~C~~ 182 (216)
..+++| ++|+++++..
T Consensus 164 ~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 164 LPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp GGGTTSCEEEEEEEESSC
T ss_pred hhhhhceeeEEEeecccc
Confidence 345555 9999988854
No 105
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.97 E-value=4.2e-09 Score=79.72 Aligned_cols=128 Identities=18% Similarity=0.198 Sum_probs=92.7
Q ss_pred cceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccccccc
Q 041465 11 LKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKL 90 (216)
Q Consensus 11 Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l 90 (216)
-+++++++++++.+.. ..+.+|++|+++++....++...++..+++|++|++++|... .+.+ ..++.+
T Consensus 10 ~~~l~~s~~~l~~ip~-----~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~------~~~~~l 77 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPR-----DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEP------NAFEGA 77 (192)
T ss_dssp TTEEECTTSCCSSCCS-----CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCT------TTTTTC
T ss_pred CCEEEcCCCCcCcCcc-----CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCH------hHcCCc
Confidence 3778888888776432 234589999999997766653103458999999999998766 4433 235678
Q ss_pred ccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCC
Q 041465 91 AMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCK 155 (216)
Q Consensus 91 ~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~ 155 (216)
++|+.|++++. +++.+....+ ..+++|+.|+++++. ++.+.|..+..+++|++|++++++
T Consensus 78 ~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 78 SHIQELQLGEN-KIKEISNKMF---LGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTCCEEECCSC-CCCEECSSSS---TTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred ccCCEEECCCC-cCCccCHHHh---cCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence 99999999886 5666643322 357889999998874 666666656678899999998764
No 106
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.96 E-value=4e-09 Score=78.59 Aligned_cols=128 Identities=17% Similarity=0.131 Sum_probs=85.8
Q ss_pred ccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccc
Q 041465 10 NLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGK 89 (216)
Q Consensus 10 ~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~ 89 (216)
+.+.++++++++..+. ...+++|+.|+++++....+|.. .+..+++|++|++++|... .+.+ ..++.
T Consensus 8 ~~~~l~~~~~~l~~~p-----~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~~~~------~~~~~ 74 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVP-----TGIPSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSQNQIQ-SLPD------GVFDK 74 (177)
T ss_dssp ETTEEECCSSCCSSCC-----TTCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCC-CCCT------TTTTT
T ss_pred CCCEEEecCCCCccCC-----CCCCCCCcEEEeCCCcccEeCHH-HhcCcccccEEECCCCcce-EeCh------hHccC
Confidence 3566777777766532 23357899999999877677765 5558899999999888655 3322 12456
Q ss_pred cccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCC
Q 041465 90 LAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCK 155 (216)
Q Consensus 90 l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~ 155 (216)
+++|+.|++++. ++..+.... ...+++|+.|+++++ .++.+++..+..+++|++|++++++
T Consensus 75 l~~L~~L~l~~N-~l~~~~~~~---~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 75 LTKLTILYLHEN-KLQSLPNGV---FDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEEECCCC-CccccCHHH---hhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 888888888875 455443221 134678888888876 4666655533557788888887764
No 107
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.96 E-value=2.5e-10 Score=100.14 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=89.1
Q ss_pred ccccceEEcccc-ccccc------ccCCC----C--ccccCCccEEEEecCCCC-CcChHHHHhhCCCCcEEEEeecCCc
Q 041465 8 VPNLKELSLSGK-DVKLI------LQADF----P--QHFFGSLRELEIAEDNSA-CFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 8 ~p~Le~L~l~~~-~l~~i------~~~~~----~--~~~~~~L~~L~i~~c~~~-~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
||+|++|.++++ .+..+ |.+.. . ...+++|++|++++|... ..+.. +...+++|++|++++|...
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~-l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL-IAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH-HHHHCTTCCEEEEESCEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH-HHHhCCCCcEEeCCCcCCC
Confidence 689999999883 23221 10100 0 124789999999998642 22333 4447899999999988544
Q ss_pred eeEeccCccccccccccccccEEecCcccccceecccCcc-cCCcCCcccEEEEecCc-Cceee-cCCCcccCCCccEEE
Q 041465 74 EEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSK-LGPIFQYLEILKVYHCQ-SLLIL-LPSSSVSFRNLTKLV 150 (216)
Q Consensus 74 e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~-~~~~l~~L~~L~i~~c~-~L~~l-~~~~~~~l~~L~~L~ 150 (216)
.. .+. ......+++|++|+++++. +......... ....+++|+.|++++|. .+..- .......+++|++|+
T Consensus 144 ~~----~~l-~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~ 217 (594)
T 2p1m_B 144 ST----DGL-AAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK 217 (594)
T ss_dssp EH----HHH-HHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CH----HHH-HHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEe
Confidence 11 000 0112357888999888875 3322111111 11246678888887775 11100 000012357777777
Q ss_pred EecCCCCcccCCchHHhhccCCcEEEEe
Q 041465 151 AFGCKKLLHMVTSSTAKTLVQLVTVSIC 178 (216)
Q Consensus 151 i~~C~~L~~l~~~~~~~~l~~L~~L~i~ 178 (216)
+++|..++.+ +.....+++|++|.+.
T Consensus 218 L~~~~~~~~l--~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 218 LNRAVPLEKL--ATLLQRAPQLEELGTG 243 (594)
T ss_dssp CCTTSCHHHH--HHHHHHCTTCSEEECS
T ss_pred cCCCCcHHHH--HHHHhcCCcceEcccc
Confidence 7777555542 2344556666666543
No 108
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.95 E-value=5.7e-09 Score=79.16 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=91.1
Q ss_pred ceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccc
Q 041465 12 KELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLA 91 (216)
Q Consensus 12 e~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~ 91 (216)
+.+++++++++.+. ...+++|++|+++++....+|.. +..+++|++|++++|... .+.+ ..+..++
T Consensus 13 ~~l~~~~~~l~~ip-----~~~~~~l~~L~L~~n~i~~ip~~--~~~l~~L~~L~Ls~N~i~-~i~~------~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-----KGIPRDVTELYLDGNQFTLVPKE--LSNYKHLTLIDLSNNRIS-TLSN------QSFSNMT 78 (193)
T ss_dssp TEEECTTSCCSSCC-----SCCCTTCCEEECCSSCCCSCCGG--GGGCTTCCEEECCSSCCC-CCCT------TTTTTCT
T ss_pred CEEEcCCCCCCcCC-----CCCCCCCCEEECCCCcCchhHHH--hhcccCCCEEECCCCcCC-EeCH------hHccCCC
Confidence 56778777777643 23357899999999988888854 458999999999998766 4332 2356789
Q ss_pred cccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCC
Q 041465 92 MIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCK 155 (216)
Q Consensus 92 ~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~ 155 (216)
+|+.|++++. .++.+....+ ..+++|+.|+++++. ++.+++..+..+++|++|++.+.+
T Consensus 79 ~L~~L~Ls~N-~l~~i~~~~f---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 79 QLLTLILSYN-RLRCIPPRTF---DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TCCEEECCSS-CCCBCCTTTT---TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-ccCEeCHHHh---CCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 9999999886 4666543322 357889999998864 666766545568889999888654
No 109
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.94 E-value=9.7e-09 Score=91.25 Aligned_cols=58 Identities=21% Similarity=0.102 Sum_probs=36.3
Q ss_pred cCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCcc
Q 041465 117 IFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSA 182 (216)
Q Consensus 117 ~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 182 (216)
.+++|+.|++++| +++.+++ .+++|++|++++| +++.++ .....+++|+.|++++++-
T Consensus 239 ~l~~L~~L~Ls~N-~L~~lp~----~~~~L~~L~Ls~N-~L~~lp--~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 239 LPSELKELMVSGN-RLTSLPM----LPSGLLSLSVYRN-QLTRLP--ESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCCSCC--GGGGGSCTTCEEECCSCCC
T ss_pred CCCcCcEEECCCC-CCCcCCc----ccccCcEEeCCCC-CCCcCC--HHHhhccccCEEEecCCCC
Confidence 3566777777765 3555432 3567777777776 466542 2345677777777777753
No 110
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.93 E-value=1.1e-08 Score=87.67 Aligned_cols=56 Identities=18% Similarity=0.036 Sum_probs=31.1
Q ss_pred cCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 117 IFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 117 ~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
.+++|+.|++++|. ++.++. ..++|++|++++| .++.++ . ...+++|++|++++|.
T Consensus 193 ~l~~L~~L~l~~N~-l~~l~~----~~~~L~~L~l~~n-~l~~lp--~-~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 193 NLPFLTAIYADNNS-LKKLPD----LPLSLESIVAGNN-ILEELP--E-LQNLPFLTTIYADNNL 248 (454)
T ss_dssp TCTTCCEEECCSSC-CSSCCC----CCTTCCEEECCSS-CCSSCC--C-CTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc-CCcCCC----CcCcccEEECcCC-cCCccc--c-cCCCCCCCEEECCCCc
Confidence 45566666666553 333321 1246667777666 355432 1 3466777777777763
No 111
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.93 E-value=1e-08 Score=87.84 Aligned_cols=129 Identities=16% Similarity=0.108 Sum_probs=75.0
Q ss_pred CCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccC-c-c-------c----cccccccccccEEecCcc
Q 041465 35 GSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEE-G-C-------L----EKHVGKLAMIKTLELNRH 101 (216)
Q Consensus 35 ~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~-~-~-------~----~~~~~~l~~L~~L~l~~~ 101 (216)
++|++|++++|....+|. + ..+++|++|++++|... .+ |.. + . + ...++.+++|+.|+++++
T Consensus 131 ~~L~~L~L~~n~l~~lp~--~-~~l~~L~~L~l~~N~l~-~l-p~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPE--L-QNSSFLKIIDVDNNSLK-KL-PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCC--C-TTCTTCCEEECCSSCCS-CC-CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcc--c-CCCCCCCEEECCCCcCc-cc-CCCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 467777777775555662 2 36777777777776544 22 210 0 0 0 001234455555555544
Q ss_pred cccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 102 YHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 102 ~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
.+..+. ...++|++|++++| .++.+ |. +..+++|++|++++|. ++.+.. .+++|++|++++|.
T Consensus 206 -~l~~l~-------~~~~~L~~L~l~~n-~l~~l-p~-~~~l~~L~~L~l~~N~-l~~l~~-----~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 206 -SLKKLP-------DLPLSLESIVAGNN-ILEEL-PE-LQNLPFLTTIYADNNL-LKTLPD-----LPPSLEALNVRDNY 268 (454)
T ss_dssp -CCSSCC-------CCCTTCCEEECCSS-CCSSC-CC-CTTCTTCCEEECCSSC-CSSCCS-----CCTTCCEEECCSSC
T ss_pred -cCCcCC-------CCcCcccEEECcCC-cCCcc-cc-cCCCCCCCEEECCCCc-CCcccc-----cccccCEEECCCCc
Confidence 222211 12468999999988 46655 44 6678899999998874 665421 24688899988875
Q ss_pred cchhh
Q 041465 182 AMTEV 186 (216)
Q Consensus 182 ~l~~i 186 (216)
+..+
T Consensus 269 -l~~l 272 (454)
T 1jl5_A 269 -LTDL 272 (454)
T ss_dssp -CSCC
T ss_pred -cccc
Confidence 4433
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.90 E-value=1.7e-09 Score=90.27 Aligned_cols=12 Identities=25% Similarity=0.055 Sum_probs=7.8
Q ss_pred cccccceecccC
Q 041465 201 FCKLKALILSDL 212 (216)
Q Consensus 201 ~~~L~~L~l~~l 212 (216)
+|+|++|++.++
T Consensus 302 l~~L~~L~l~~N 313 (386)
T 2ca6_A 302 MPDLLFLELNGN 313 (386)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCceEEEccCC
Confidence 566777776655
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.90 E-value=5.4e-10 Score=80.94 Aligned_cols=59 Identities=20% Similarity=0.189 Sum_probs=32.0
Q ss_pred CCcccEEEEecCcCceeec-CCCcccCCCccEEEEecCCCCcccCC--chHHhhccCCcEEEEe
Q 041465 118 FQYLEILKVYHCQSLLILL-PSSSVSFRNLTKLVAFGCKKLLHMVT--SSTAKTLVQLVTVSIC 178 (216)
Q Consensus 118 l~~L~~L~i~~c~~L~~l~-~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~~~~l~~L~~L~i~ 178 (216)
+++|+.|++++|. ++.++ +..+..+++|++|++++|+ ++.+.+ ......+++|++|+++
T Consensus 87 l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 3444444444443 33221 1224567778888887773 555432 1345667788877654
No 114
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.86 E-value=2.3e-09 Score=94.03 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=9.5
Q ss_pred ccccceEEcccccc
Q 041465 8 VPNLKELSLSGKDV 21 (216)
Q Consensus 8 ~p~Le~L~l~~~~l 21 (216)
+|+|++|+++++.+
T Consensus 163 ~~~L~~L~L~~~~~ 176 (592)
T 3ogk_B 163 CRKIKTLLMEESSF 176 (592)
T ss_dssp CTTCSEEECTTCEE
T ss_pred CCCCCEEECccccc
Confidence 57777777777544
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.86 E-value=1.6e-09 Score=95.11 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=35.7
Q ss_pred ccc-cceEEccccc-cccc-ccCCCCccccCCccEEEEecCCC-CC----cChHHHHhhCCCCcEEEEeecCC
Q 041465 8 VPN-LKELSLSGKD-VKLI-LQADFPQHFFGSLRELEIAEDNS-AC----FPIWNVLERFHNLEKLILVCFSF 72 (216)
Q Consensus 8 ~p~-Le~L~l~~~~-l~~i-~~~~~~~~~~~~L~~L~i~~c~~-~~----~p~~~~~~~l~~L~~L~i~~c~~ 72 (216)
+|+ |++|+++++. +... +.. . ...+++|++|++++|.. .. ++. +...+++|++|+++++..
T Consensus 136 ~~~~L~~L~L~~~~~~~~~~l~~-~-~~~~~~L~~L~L~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~n~~ 204 (592)
T 3ogk_B 136 RADDLETLKLDKCSGFTTDGLLS-I-VTHCRKIKTLLMEESSFSEKDGKWLHE--LAQHNTSLEVLNFYMTEF 204 (592)
T ss_dssp HGGGCCEEEEESCEEEEHHHHHH-H-HHHCTTCSEEECTTCEEECCCSHHHHH--HHHHCCCCCEEECTTCCC
T ss_pred ccccCcEEECcCCCCcCHHHHHH-H-HhhCCCCCEEECccccccCcchhHHHH--HHhcCCCccEEEeeccCC
Confidence 455 9999998743 2110 000 0 12478888888888842 11 221 344778888888876544
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.85 E-value=3.9e-10 Score=94.21 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=40.2
Q ss_pred ccccceEEcccccccccccCCCCc---------cccCCccEEEEecCCCCC-----cChHHHHhhCCCCcEEEEeecCCc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQ---------HFFGSLRELEIAEDNSAC-----FPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~---------~~~~~L~~L~i~~c~~~~-----~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
+++|++|+++++.+..+. +..|. ..+++|++|++++|.... +|.. + ..+++|++|++++|...
T Consensus 59 ~~~L~~L~Ls~~~~~~l~-~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l-~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVK-DEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF-L-SKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp CTTCCEEECCSCCTTSCG-GGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHH-H-HHCTTCCEEECCSSCCH
T ss_pred CCCccEEeCcccccCccc-cchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHH-H-HhCCCCCEEECcCCCCC
Confidence 788899988875433211 11111 236788888888886433 4543 3 47888888888887653
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.84 E-value=1.2e-08 Score=89.79 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=31.4
Q ss_pred ccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 10 NLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 10 ~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
++++|+++++++..+. ...+++|++|++++|....+| . .+++|++|++++|...
T Consensus 60 ~L~~L~Ls~n~L~~lp-----~~l~~~L~~L~Ls~N~l~~ip-~----~l~~L~~L~Ls~N~l~ 113 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLP-----DNLPPQITVLEITQNALISLP-E----LPASLEYLDACDNRLS 113 (571)
T ss_dssp TCSEEECCSSCCSCCC-----SCCCTTCSEEECCSSCCSCCC-C----CCTTCCEEECCSSCCS
T ss_pred CccEEEeCCCCCCccC-----HhHcCCCCEEECcCCCCcccc-c----ccCCCCEEEccCCCCC
Confidence 6667777666665522 122456666666666555566 3 4566666666666443
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.83 E-value=1.3e-09 Score=78.91 Aligned_cols=39 Identities=28% Similarity=0.378 Sum_probs=24.0
Q ss_pred cCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 142 SFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 142 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
.+++|++|++++|. ++.+........+++|++|++++|.
T Consensus 86 ~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 86 KCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp HCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred hCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc
Confidence 46777777777764 5543222344566777777777764
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.81 E-value=1.3e-08 Score=75.81 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=81.2
Q ss_pred cCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcc
Q 041465 34 FGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSK 113 (216)
Q Consensus 34 ~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 113 (216)
..+|+.|++++|....+|. +....++|++|++++|... .+ + .++.+++|+.|+++++ .+..+....+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~-~~-~-------~l~~l~~L~~L~Ls~N-~l~~~~~~~~- 84 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIR-KL-D-------GFPLLRRLKTLLVNNN-RICRIGEGLD- 84 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCC-EE-C-------CCCCCSSCCEEECCSS-CCCEECSCHH-
T ss_pred cCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCC-cc-c-------ccccCCCCCEEECCCC-cccccCcchh-
Confidence 4567777777776555553 2223347777777776554 33 2 2445677777777765 3555422111
Q ss_pred cCCcCCcccEEEEecCcCceeecC-CCcccCCCccEEEEecCCCCcccCCc--hHHhhccCCcEEEEecCccc
Q 041465 114 LGPIFQYLEILKVYHCQSLLILLP-SSSVSFRNLTKLVAFGCKKLLHMVTS--STAKTLVQLVTVSICGCSAM 183 (216)
Q Consensus 114 ~~~~l~~L~~L~i~~c~~L~~l~~-~~~~~l~~L~~L~i~~C~~L~~l~~~--~~~~~l~~L~~L~i~~C~~l 183 (216)
..+++|+.|++++|. ++.+++ ..+..+++|++|++++++ +..+... .....+++|+.|+++++..-
T Consensus 85 --~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 85 --QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp --HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred --hcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 246777777777764 444433 125578889999998875 5554221 13567889999998888643
No 120
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.76 E-value=3.5e-08 Score=73.41 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=83.4
Q ss_pred cccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccc
Q 041465 7 IVPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKH 86 (216)
Q Consensus 7 ~~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~ 86 (216)
.+++|++|+++++.+..+.+..+ ..+++|++|++++|....+|.. .+..+++|++|++++|... .+.+ ..
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~-~~~~------~~ 95 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSLPHGVF--DKLTQLTKLSLSQNQIQSLPDG-VFDKLTKLTILYLHENKLQ-SLPN------GV 95 (177)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTT--TTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC-CCCT------TT
T ss_pred CCCCCcEEEeCCCcccEeCHHHh--cCcccccEEECCCCcceEeChh-HccCCCccCEEECCCCCcc-ccCH------HH
Confidence 35799999999988887554433 3478999999999988777765 5568999999999998766 4332 12
Q ss_pred ccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCc
Q 041465 87 VGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQ 130 (216)
Q Consensus 87 ~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~ 130 (216)
++.+++|+.|++++. ++..+.... ...+++|+.|++++++
T Consensus 96 ~~~l~~L~~L~l~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 96 FDKLTQLKELALDTN-QLKSVPDGI---FDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTT---TTTCTTCCEEECCSSC
T ss_pred hhCCcccCEEECcCC-cceEeCHHH---hcCCcccCEEEecCCC
Confidence 457899999999986 566654322 1357899999999875
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.75 E-value=4.7e-08 Score=74.03 Aligned_cols=125 Identities=15% Similarity=0.166 Sum_probs=95.3
Q ss_pred cEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcccCCc
Q 041465 38 RELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPI 117 (216)
Q Consensus 38 ~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~ 117 (216)
+.++++++....+|.. -.++|++|+++++... .+ + ..+..+++|+.|++++. .+..+....+ ..
T Consensus 13 ~~l~~~~~~l~~ip~~----~~~~l~~L~L~~n~i~-~i-p------~~~~~l~~L~~L~Ls~N-~i~~i~~~~f---~~ 76 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG----IPRDVTELYLDGNQFT-LV-P------KELSNYKHLTLIDLSNN-RISTLSNQSF---SN 76 (193)
T ss_dssp TEEECTTSCCSSCCSC----CCTTCCEEECCSSCCC-SC-C------GGGGGCTTCCEEECCSS-CCCCCCTTTT---TT
T ss_pred CEEEcCCCCCCcCCCC----CCCCCCEEECCCCcCc-hh-H------HHhhcccCCCEEECCCC-cCCEeCHhHc---cC
Confidence 6788888877888876 3478999999998765 33 2 13567999999999986 5666543322 36
Q ss_pred CCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCc
Q 041465 118 FQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 118 l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
+++|++|+++++. ++.+++..+..+++|++|+++++. ++.+.+ .....+++|++|++.+.+
T Consensus 77 l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 77 MTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPE-GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeCh-hhhhcCccccEEEeCCCC
Confidence 8999999999975 777777656789999999999874 776543 445678999999998754
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.74 E-value=5.4e-08 Score=85.59 Aligned_cols=56 Identities=16% Similarity=0.292 Sum_probs=38.5
Q ss_pred cccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 7 IVPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 7 ~~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
.+++|++|++++++++.+ | ..+++|++|++++|....+|. +. . +|++|++++|...
T Consensus 78 l~~~L~~L~Ls~N~l~~i-----p-~~l~~L~~L~Ls~N~l~~ip~--l~-~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 78 LPPQITVLEITQNALISL-----P-ELPASLEYLDACDNRLSTLPE--LP-A--SLKHLDVDNNQLT 133 (571)
T ss_dssp CCTTCSEEECCSSCCSCC-----C-CCCTTCCEEECCSSCCSCCCC--CC-T--TCCEEECCSSCCS
T ss_pred HcCCCCEEECcCCCCccc-----c-cccCCCCEEEccCCCCCCcch--hh-c--CCCEEECCCCcCC
Confidence 357888888888877753 2 346788888888886655664 11 2 7778887777654
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.71 E-value=9.4e-08 Score=72.20 Aligned_cols=110 Identities=17% Similarity=0.129 Sum_probs=82.6
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
++++++|+++++.+..+.+... ...+++|++|++++|....++.. .+..+++|++|++++|... .+.+ ..+
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~~~~------~~~ 98 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGL-FGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGENKIK-EISN------KMF 98 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCS-GGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSCCCC-EECS------SSS
T ss_pred CCCCCEEECCCCcCCccCCccc-cccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECCCCcCC-ccCH------HHh
Confidence 5699999999998887654311 14589999999999987666433 3458999999999999876 5544 235
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCc
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQ 130 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~ 130 (216)
+.+++|+.|++++. ++..+....+ ..+++|+.|++++++
T Consensus 99 ~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 99 LGLHQLKTLNLYDN-QISCVMPGSF---EHLNSLTSLNLASNP 137 (192)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTSS---TTCTTCCEEECTTCC
T ss_pred cCCCCCCEEECCCC-cCCeeCHHHh---hcCCCCCEEEeCCCC
Confidence 57899999999986 5666543322 357899999998875
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.70 E-value=1.2e-08 Score=76.06 Aligned_cols=131 Identities=12% Similarity=0.084 Sum_probs=93.8
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
.++|++|+++++++..+ +. + ...+++|++|++++|....++ .+..+++|++|++++|... .+.+ ..+
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~-~-~~~~~~L~~L~Ls~N~l~~~~---~l~~l~~L~~L~Ls~N~l~-~~~~------~~~ 84 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-EN-L-GATLDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNNRIC-RIGE------GLD 84 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CC-G-GGGTTCCSEEECCSSCCCEEC---CCCCCSSCCEEECCSSCCC-EECS------CHH
T ss_pred cCCceEEEeeCCCCchh-HH-h-hhcCCCCCEEECCCCCCCccc---ccccCCCCCEEECCCCccc-ccCc------chh
Confidence 57899999999888865 22 1 123459999999999776663 2348999999999999776 5432 113
Q ss_pred cccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCC---CcccCCCccEEEEecCC
Q 041465 88 GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPS---SSVSFRNLTKLVAFGCK 155 (216)
Q Consensus 88 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~---~~~~l~~L~~L~i~~C~ 155 (216)
+.+++|+.|++++. .+..+..- .....+++|+.|++++|+ +..++.. .+..+++|++|+++++.
T Consensus 85 ~~l~~L~~L~L~~N-~i~~~~~~--~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNN-SLVELGDL--DPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSC-CCCCGGGG--GGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCC-cCCcchhh--HhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 57899999999986 45554320 112368899999999986 4444321 24578999999998875
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=2.6e-07 Score=75.48 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=42.6
Q ss_pred ccccceEEccccccc--ccccCCC-------------Cc---cc--------cCCccEEEEecCCCCCcChHHHHhhCCC
Q 041465 8 VPNLKELSLSGKDVK--LILQADF-------------PQ---HF--------FGSLRELEIAEDNSACFPIWNVLERFHN 61 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~--~i~~~~~-------------~~---~~--------~~~L~~L~i~~c~~~~~p~~~~~~~l~~ 61 (216)
+++|+.|+|+++.+. ....+.+ +. .. +++|+.+++.+ ....++.. .+..+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~-aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA-AFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT-TTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHH-HhhcCcc
Confidence 678999999987766 1111111 11 13 67888888888 66667766 5568899
Q ss_pred CcEEEEeecCCc
Q 041465 62 LEKLILVCFSFN 73 (216)
Q Consensus 62 L~~L~i~~c~~~ 73 (216)
|+.+.+.++...
T Consensus 126 L~~l~l~~n~i~ 137 (329)
T 3sb4_A 126 LKICQIRKKTAP 137 (329)
T ss_dssp CCEEEBCCSSCC
T ss_pred cceEEcCCCCcc
Confidence 999999877543
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.63 E-value=1.8e-08 Score=83.55 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=7.8
Q ss_pred ccceEEcccccccc
Q 041465 10 NLKELSLSGKDVKL 23 (216)
Q Consensus 10 ~Le~L~l~~~~l~~ 23 (216)
+|++|+++++.+..
T Consensus 23 ~L~~L~Ls~n~l~~ 36 (362)
T 3goz_A 23 GVTSLDLSLNNLYS 36 (362)
T ss_dssp TCCEEECTTSCGGG
T ss_pred CceEEEccCCCCCh
Confidence 36666666655443
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.62 E-value=2.4e-08 Score=82.75 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=43.6
Q ss_pred cc-ccceEEcccccccccccCCCCc---cccCCccEEEEecCCCCCcChHHH---HhhC-CCCcEEEEeecCCc
Q 041465 8 VP-NLKELSLSGKDVKLILQADFPQ---HFFGSLRELEIAEDNSACFPIWNV---LERF-HNLEKLILVCFSFN 73 (216)
Q Consensus 8 ~p-~Le~L~l~~~~l~~i~~~~~~~---~~~~~L~~L~i~~c~~~~~p~~~~---~~~l-~~L~~L~i~~c~~~ 73 (216)
++ +|++|+++++.+.......+.. ..+++|++|++++|.....+...+ +..+ ++|++|++++|...
T Consensus 49 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 49 TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 45 8999999998876532211110 013899999999997643332212 2244 89999999998754
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.57 E-value=1.9e-09 Score=91.76 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=8.9
Q ss_pred cccccceecccC
Q 041465 201 FCKLKALILSDL 212 (216)
Q Consensus 201 ~~~L~~L~l~~l 212 (216)
+++|++|++.++
T Consensus 255 ~~~L~~L~L~~n 266 (461)
T 1z7x_W 255 SSRLRTLWIWEC 266 (461)
T ss_dssp TCCCCEEECTTS
T ss_pred CCCceEEECcCC
Confidence 567888887776
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.54 E-value=2.4e-07 Score=81.45 Aligned_cols=123 Identities=17% Similarity=0.125 Sum_probs=88.6
Q ss_pred CCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCccc
Q 041465 35 GSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKL 114 (216)
Q Consensus 35 ~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~ 114 (216)
..|+.|++++|....+|. +..+++|+.|++++|... .+ | ..++.+++|+.|++++. .++.+. .
T Consensus 441 ~~L~~L~Ls~n~l~~lp~---~~~l~~L~~L~Ls~N~l~-~l-p------~~~~~l~~L~~L~Ls~N-~l~~lp-----~ 503 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLR-AL-P------PALAALRCLEVLQASDN-ALENVD-----G 503 (567)
T ss_dssp TTCSEEECTTSCCSSCCC---GGGGTTCCEEECCSSCCC-CC-C------GGGGGCTTCCEEECCSS-CCCCCG-----G
T ss_pred cCceEEEecCCCCCCCcC---ccccccCcEeecCccccc-cc-c------hhhhcCCCCCEEECCCC-CCCCCc-----c
Confidence 468899999997777774 348889999999888765 33 3 13567889999999875 455542 2
Q ss_pred CCcCCcccEEEEecCcCceeec-CCCcccCCCccEEEEecCCCCcccCCc--hHHhhccCCcEEE
Q 041465 115 GPIFQYLEILKVYHCQSLLILL-PSSSVSFRNLTKLVAFGCKKLLHMVTS--STAKTLVQLVTVS 176 (216)
Q Consensus 115 ~~~l~~L~~L~i~~c~~L~~l~-~~~~~~l~~L~~L~i~~C~~L~~l~~~--~~~~~l~~L~~L~ 176 (216)
...+++|+.|++++|. ++.+. |..+..+++|++|++++++ ++..++. .....+++|+.|+
T Consensus 504 l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 504 VANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred cCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 2468899999998874 66664 5547789999999999875 6665432 2334578888874
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.49 E-value=4e-07 Score=67.39 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=47.4
Q ss_pred ccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccc
Q 041465 10 NLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGK 89 (216)
Q Consensus 10 ~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~ 89 (216)
..+.++++++.++.+.. ..+++|++|++++|....++.. .+..+++|++|++++|... .+.+ ..++.
T Consensus 10 ~~~~l~~s~n~l~~ip~-----~~~~~l~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~-~l~~------~~f~~ 76 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-----GIPTTTQVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQLT-VLPA------GVFDK 76 (170)
T ss_dssp ETTEEECTTSCCSSCCS-----CCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCC-CCCT------TTTTT
T ss_pred CCCEEEeCCCCcCccCc-----cCCCCCcEEEcCCCcCCccChh-hhcCcccCCEEECCCCCcC-ccCh------hhccC
Confidence 45677777777665332 2246778888888776555443 3447777888888777654 3322 11335
Q ss_pred cccccEEecCcc
Q 041465 90 LAMIKTLELNRH 101 (216)
Q Consensus 90 l~~L~~L~l~~~ 101 (216)
+++|+.|++++.
T Consensus 77 l~~L~~L~L~~N 88 (170)
T 3g39_A 77 LTQLTQLSLNDN 88 (170)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 566666666553
No 131
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=8.5e-08 Score=71.56 Aligned_cols=90 Identities=9% Similarity=0.141 Sum_probs=61.4
Q ss_pred ccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccC----CCccEEEEecCCCCcccCCchHH
Q 041465 91 AMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSF----RNLTKLVAFGCKKLLHMVTSSTA 166 (216)
Q Consensus 91 ~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l----~~L~~L~i~~C~~L~~l~~~~~~ 166 (216)
.+|++|++++|. +...+ ......+++|+.|++++|..++.-.-..+... ++|++|++++|.+++.--- ...
T Consensus 61 ~~L~~LDLs~~~-Itd~G---L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIG---FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IAL 135 (176)
T ss_dssp CCEEEEEEESCC-CCGGG---GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHG
T ss_pred ceEeEEeCcCCC-ccHHH---HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHH
Confidence 468999999986 54432 22234688999999999988765311111222 4699999999998876321 223
Q ss_pred hhccCCcEEEEecCccchh
Q 041465 167 KTLVQLVTVSICGCSAMTE 185 (216)
Q Consensus 167 ~~l~~L~~L~i~~C~~l~~ 185 (216)
..+++|++|++++|+.+.+
T Consensus 136 ~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCEEECCCCCCCCc
Confidence 4678999999999987765
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.48 E-value=3e-07 Score=68.41 Aligned_cols=103 Identities=15% Similarity=0.174 Sum_probs=73.9
Q ss_pred cceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccccccc
Q 041465 11 LKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKL 90 (216)
Q Consensus 11 Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l 90 (216)
-..++++++.+..+. ....++|+.|++++|....++.. .+..+++|++|++++|... .+.+ ..++.+
T Consensus 14 ~~~l~~~~n~l~~iP-----~~~~~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~i~~------~~~~~l 80 (174)
T 2r9u_A 14 QTLVNCQNIRLASVP-----AGIPTDKQRLWLNNNQITKLEPG-VFDHLVNLQQLYFNSNKLT-AIPT------GVFDKL 80 (174)
T ss_dssp SSEEECCSSCCSSCC-----SCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC-CCCT------TTTTTC
T ss_pred CcEEEeCCCCCCccC-----CCcCCCCcEEEeCCCCccccCHH-HhcCCcCCCEEECCCCCCC-ccCh------hHhCCc
Confidence 467888887777643 22347899999999987666544 4568999999999998765 4322 124578
Q ss_pred ccccEEecCcccccceecccCcccCCcCCcccEEEEecCc
Q 041465 91 AMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQ 130 (216)
Q Consensus 91 ~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~ 130 (216)
++|+.|++++. +++.+....+ ..+++|+.|++++++
T Consensus 81 ~~L~~L~L~~N-~l~~l~~~~~---~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 81 TQLTQLDLNDN-HLKSIPRGAF---DNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCCEEECCSS-CCCCCCTTTT---TTCTTCSEEECCSSC
T ss_pred chhhEEECCCC-ccceeCHHHh---ccccCCCEEEeCCCC
Confidence 99999999885 5666543322 357899999998875
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.47 E-value=3.1e-07 Score=67.99 Aligned_cols=84 Identities=14% Similarity=0.204 Sum_probs=66.6
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHV 87 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~ 87 (216)
.++|++|+++++.++.+.+..+ ..+++|++|++++|....+|.. .+..+++|++|++++|... .+.+ ..+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~~N~l~-~~~~------~~~ 98 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVF--DRLTQLTRLDLDNNQLTVLPAG-VFDKLTQLTQLSLNDNQLK-SIPR------GAF 98 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT--TTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC-CCCT------TTT
T ss_pred CCCCcEEEcCCCcCCccChhhh--cCcccCCEEECCCCCcCccChh-hccCCCCCCEEECCCCccC-EeCH------HHh
Confidence 5799999999999988755444 3589999999999988788876 5668999999999998766 4333 135
Q ss_pred cccccccEEecCcc
Q 041465 88 GKLAMIKTLELNRH 101 (216)
Q Consensus 88 ~~l~~L~~L~l~~~ 101 (216)
+.+++|+.|++++.
T Consensus 99 ~~l~~L~~L~L~~N 112 (170)
T 3g39_A 99 DNLKSLTHIWLLNN 112 (170)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cCCCCCCEEEeCCC
Confidence 56888888888764
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.47 E-value=1.1e-07 Score=85.97 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=73.8
Q ss_pred cCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcc
Q 041465 34 FGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSK 113 (216)
Q Consensus 34 ~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 113 (216)
+++|+.|++++|....+|.. +. .+++|++|++++|... .+ | ..++.+++|+.|+|++. .+..+..
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~-~~-~l~~L~~L~Ls~N~l~-~l-p------~~~~~l~~L~~L~Ls~N-~l~~lp~---- 287 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISAN-IF-KYDFLTRLYLNGNSLT-EL-P------AEIKNLSNLRVLDLSHN-RLTSLPA---- 287 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGG-GG-GCCSCSCCBCTTSCCS-CC-C------GGGGGGTTCCEEECTTS-CCSSCCS----
T ss_pred CCCCcEEECCCCCCCCCChh-hc-CCCCCCEEEeeCCcCc-cc-C------hhhhCCCCCCEEeCcCC-cCCccCh----
Confidence 57788888888877677766 54 7888888888877655 32 3 13556788888888876 3555422
Q ss_pred cCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcc
Q 041465 114 LGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLH 159 (216)
Q Consensus 114 ~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~ 159 (216)
....+++|++|++++| .++.++.. +..+++|++|+++++. +..
T Consensus 288 ~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~-l~~ 330 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNP-LEK 330 (727)
T ss_dssp SGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSC-CCS
T ss_pred hhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCc-cCC
Confidence 1235778888888877 46666444 6678888888888775 544
No 135
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=8.3e-08 Score=71.59 Aligned_cols=93 Identities=12% Similarity=0.103 Sum_probs=62.4
Q ss_pred CCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcccCC-cCCcccEEEEecCcCceeecCC
Q 041465 60 HNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGP-IFQYLEILKVYHCQSLLILLPS 138 (216)
Q Consensus 60 ~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~-~l~~L~~L~i~~c~~L~~l~~~ 138 (216)
.+|++|++++|... . .|. ..+..+++|++|++++|..+..-+........ ..++|++|++++|++++.---.
T Consensus 61 ~~L~~LDLs~~~It-d----~GL--~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIM-S----IGF--DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCCCC-G----GGG--GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCCcc-H----HHH--HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 46999999998633 1 222 23457899999999999877653322111100 1347999999999988752111
Q ss_pred CcccCCCccEEEEecCCCCcc
Q 041465 139 SSVSFRNLTKLVAFGCKKLLH 159 (216)
Q Consensus 139 ~~~~l~~L~~L~i~~C~~L~~ 159 (216)
.+..+++|++|++++|++++.
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 134689999999999998875
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.45 E-value=4.9e-07 Score=79.46 Aligned_cols=154 Identities=14% Similarity=0.213 Sum_probs=102.1
Q ss_pred ccCCccEEE-EecCCCCCcChH----HHHh--hCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccc
Q 041465 33 FFGSLRELE-IAEDNSACFPIW----NVLE--RFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLK 105 (216)
Q Consensus 33 ~~~~L~~L~-i~~c~~~~~p~~----~~~~--~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~ 105 (216)
.+++|+.|+ ++.+....++.- +-+. ....|+.|++++|... . +| .++.+++|+.|++++. ++.
T Consensus 407 ~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~-lp-------~~~~l~~L~~L~Ls~N-~l~ 476 (567)
T 1dce_A 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-V-LC-------HLEQLLLVTHLDLSHN-RLR 476 (567)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-S-CC-------CGGGGTTCCEEECCSS-CCC
T ss_pred HHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCC-C-Cc-------CccccccCcEeecCcc-ccc
Confidence 467788887 444422222211 0011 2246999999998765 3 23 1567999999999986 566
Q ss_pred eecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchh
Q 041465 106 QLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTE 185 (216)
Q Consensus 106 ~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~ 185 (216)
.+.. ....+++|+.|+++++. ++.++ . +..+++|++|+++++ +++.+..+.....+++|+.|++++++ +..
T Consensus 477 ~lp~----~~~~l~~L~~L~Ls~N~-l~~lp-~-l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~ 547 (567)
T 1dce_A 477 ALPP----ALAALRCLEVLQASDNA-LENVD-G-VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQ 547 (567)
T ss_dssp CCCG----GGGGCTTCCEEECCSSC-CCCCG-G-GTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGG
T ss_pred ccch----hhhcCCCCCEEECCCCC-CCCCc-c-cCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCC
Confidence 6532 22468999999999974 66664 4 788999999999987 47776413456789999999999986 544
Q ss_pred hccCCccccccceeecccccceec
Q 041465 186 VVINGKEGVEKEEIVFCKLKALIL 209 (216)
Q Consensus 186 i~~~~~~~~~~~~~~~~~L~~L~l 209 (216)
+..... .....+|+|+.|.+
T Consensus 548 ~~~~~~----~l~~~lp~L~~L~l 567 (567)
T 1dce_A 548 EEGIQE----RLAEMLPSVSSILT 567 (567)
T ss_dssp SSSCTT----HHHHHCTTCSEEEC
T ss_pred CccHHH----HHHHHCcccCccCC
Confidence 432111 01114788988853
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=1.7e-06 Score=70.56 Aligned_cols=165 Identities=15% Similarity=0.078 Sum_probs=105.8
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEE-----------------Eeec
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLI-----------------LVCF 70 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~-----------------i~~c 70 (216)
+++|++|.|.. +++.|.++.+ ..+++|+.+++.++....++.. .+....++..+. +.+|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF--~~~~~L~~l~l~~n~i~~i~~~-aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAF--KGCDNLKICQIRKKTAPNLLPE-ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTT--TTCTTCCEEEBCCSSCCEECTT-SSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc-cccchhHHHh--hcCcccceEEcCCCCccccchh-hhcCCCceEEecCcchhhhhccccccccccccc
Confidence 78899999988 8887766555 3578999999998866555544 333333333333 2233
Q ss_pred CCceeEec--cCccc----------cc-----------------cc-cccccccEEecCcccccceecccCcccCCcCCc
Q 041465 71 SFNEEVFS--EEGCL----------EK-----------------HV-GKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQY 120 (216)
Q Consensus 71 ~~~e~~~~--~~~~~----------~~-----------------~~-~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~ 120 (216)
..++.... ..+.. .. .+ ..+++|+.+++.+. +++.|....+. .+++
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~---~~~~ 251 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFA---QKKY 251 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTT---TCTT
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhh---CCCC
Confidence 33311110 00000 00 00 12789999999864 47787665443 5789
Q ss_pred ccEEEEecCcCceeecCCCcccCCCcc-EEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhh
Q 041465 121 LEILKVYHCQSLLILLPSSSVSFRNLT-KLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEV 186 (216)
Q Consensus 121 L~~L~i~~c~~L~~l~~~~~~~l~~L~-~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i 186 (216)
|+.+.+.+. ++.+.+.++..+++|+ .+++.+ +++.+.. ....++++|+++.+.+. .++.+
T Consensus 252 L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-~aF~~c~~L~~l~l~~n-~i~~I 312 (329)
T 3sb4_A 252 LLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-GAFMGCDNLRYVLATGD-KITTL 312 (329)
T ss_dssp CCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-TTTTTCTTEEEEEECSS-CCCEE
T ss_pred CCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-hhhhCCccCCEEEeCCC-ccCcc
Confidence 999999874 8888777666788999 999987 6777643 45567889999988654 35444
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.44 E-value=1.7e-08 Score=76.61 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=87.3
Q ss_pred ccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCc
Q 041465 33 FFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDS 112 (216)
Q Consensus 33 ~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 112 (216)
.+++|++|++++|....+| . + ..+++|++|++++|... .+ + ...+.+++|+.|+++++ ++..+.
T Consensus 46 ~l~~L~~L~ls~n~l~~l~-~-~-~~l~~L~~L~l~~n~l~-~l-~------~~~~~~~~L~~L~L~~N-~l~~l~---- 109 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS-S-L-SGMENLRILSLGRNLIK-KI-E------NLDAVADTLEELWISYN-QIASLS---- 109 (198)
T ss_dssp HTTTCSEEECSEEEESCCC-C-H-HHHTTCCEEEEEEEEEC-SC-S------SHHHHHHHCSEEEEEEE-ECCCHH----
T ss_pred cCCCCCEEECCCCCCcccc-c-c-ccCCCCCEEECCCCCcc-cc-c------chhhcCCcCCEEECcCC-cCCcCC----
Confidence 4889999999999766677 4 4 48999999999998654 32 2 12345789999999886 455542
Q ss_pred ccCCcCCcccEEEEecCcCceeecC-CCcccCCCccEEEEecCCCCcccCCc---------hHHhhccCCcEEE
Q 041465 113 KLGPIFQYLEILKVYHCQSLLILLP-SSSVSFRNLTKLVAFGCKKLLHMVTS---------STAKTLVQLVTVS 176 (216)
Q Consensus 113 ~~~~~l~~L~~L~i~~c~~L~~l~~-~~~~~l~~L~~L~i~~C~~L~~l~~~---------~~~~~l~~L~~L~ 176 (216)
....+++|+.|++++|. ++.+++ ..+..+++|++|++++|+ +....+. .....+++|+.|+
T Consensus 110 -~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp -HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred -ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 12357889999999875 444322 124578999999999885 4433211 1246788999886
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.42 E-value=1.8e-07 Score=84.61 Aligned_cols=153 Identities=18% Similarity=0.111 Sum_probs=83.0
Q ss_pred ccccceEEcccccccccccCCCCccccCCccEEEEecCC----CCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccc
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDN----SACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCL 83 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~----~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~ 83 (216)
-+.+..|++.++++..++...+ ...+|+.+.|.+.. ...+|.. .+..+++|+.|++++|... .+.+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l---~~l~Ls~~~i~~~~~~~n~~~~~~~-~~~~l~~L~~L~Ls~n~l~-~l~~----- 241 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALL---QHKKLSQYSIDEDDDIENRMVMPKD-SKYDDQLWHALDLSNLQIF-NISA----- 241 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECTTSCCS-CCCG-----
T ss_pred CCccceEEeeCCCCCcchhhHh---hcCccCcccccCccccccceecChh-hhccCCCCcEEECCCCCCC-CCCh-----
Confidence 3567778887766554332211 12334444443321 1223444 4558999999999998766 4322
Q ss_pred cccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCc
Q 041465 84 EKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTS 163 (216)
Q Consensus 84 ~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~ 163 (216)
.+..+++|+.|+|+++ .+..+.. ....+++|+.|++++|. ++.++ ..+..+++|++|++++| .++.++.
T Consensus 242 --~~~~l~~L~~L~Ls~N-~l~~lp~----~~~~l~~L~~L~Ls~N~-l~~lp-~~~~~l~~L~~L~L~~N-~l~~lp~- 310 (727)
T 4b8c_D 242 --NIFKYDFLTRLYLNGN-SLTELPA----EIKNLSNLRVLDLSHNR-LTSLP-AELGSCFQLKYFYFFDN-MVTTLPW- 310 (727)
T ss_dssp --GGGGCCSCSCCBCTTS-CCSCCCG----GGGGGTTCCEEECTTSC-CSSCC-SSGGGGTTCSEEECCSS-CCCCCCS-
T ss_pred --hhcCCCCCCEEEeeCC-cCcccCh----hhhCCCCCCEEeCcCCc-CCccC-hhhcCCCCCCEEECCCC-CCCccCh-
Confidence 2447899999999987 5665532 12468999999999986 66774 44788999999999998 4776643
Q ss_pred hHHhhccCCcEEEEecCcc
Q 041465 164 STAKTLVQLVTVSICGCSA 182 (216)
Q Consensus 164 ~~~~~l~~L~~L~i~~C~~ 182 (216)
....+++|++|+++++..
T Consensus 311 -~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 311 -EFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp -STTSCTTCCCEECTTSCC
T ss_pred -hhhcCCCccEEeCCCCcc
Confidence 367899999999999864
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.40 E-value=9.5e-07 Score=65.67 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=78.7
Q ss_pred ccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcccCC
Q 041465 37 LRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGP 116 (216)
Q Consensus 37 L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~ 116 (216)
-+.++++++....+|.. + .++|++|++++|... .+.+ ..++.+++|+.|++++. +++.+....+ .
T Consensus 14 ~~~l~~~~n~l~~iP~~-~---~~~L~~L~Ls~N~l~-~~~~------~~~~~l~~L~~L~Ls~N-~l~~i~~~~~---~ 78 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG-I---PTDKQRLWLNNNQIT-KLEP------GVFDHLVNLQQLYFNSN-KLTAIPTGVF---D 78 (174)
T ss_dssp SSEEECCSSCCSSCCSC-C---CTTCSEEECCSSCCC-CCCT------TTTTTCTTCCEEECCSS-CCCCCCTTTT---T
T ss_pred CcEEEeCCCCCCccCCC-c---CCCCcEEEeCCCCcc-ccCH------HHhcCCcCCCEEECCCC-CCCccChhHh---C
Confidence 47888888888888876 3 489999999998766 4433 23567999999999986 6776643322 3
Q ss_pred cCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCC
Q 041465 117 IFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCK 155 (216)
Q Consensus 117 ~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~ 155 (216)
.+++|+.|+++++ .++.+++..+..+++|++|++++++
T Consensus 79 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 79 KLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCC
Confidence 5789999999986 4777766546678999999999875
No 141
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.38 E-value=2.1e-08 Score=85.22 Aligned_cols=61 Identities=13% Similarity=0.035 Sum_probs=32.0
Q ss_pred CCcccEEEEecCcCceeecCCCcc-----cCCCccEEEEecCCCCcc----cCCchHHhhccCCcEEEEecCc
Q 041465 118 FQYLEILKVYHCQSLLILLPSSSV-----SFRNLTKLVAFGCKKLLH----MVTSSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 118 l~~L~~L~i~~c~~L~~l~~~~~~-----~l~~L~~L~i~~C~~L~~----l~~~~~~~~l~~L~~L~i~~C~ 181 (216)
+++|++|++++|. +....+..+. ..++|++|++++|. ++. .+ +.....+++|++|++++|+
T Consensus 340 ~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l-~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 340 NRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSL-AATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHH-HHHHHHCCCCCEEECCSSS
T ss_pred CCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHH-HHHHHhCCCccEEECCCCC
Confidence 4667777776663 3322111011 14577777777763 442 11 1233456777777777774
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.26 E-value=6.9e-08 Score=73.17 Aligned_cols=154 Identities=15% Similarity=0.109 Sum_probs=100.4
Q ss_pred CCccEEEEecC--CCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCc
Q 041465 35 GSLRELEIAED--NSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDS 112 (216)
Q Consensus 35 ~~L~~L~i~~c--~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 112 (216)
-.|+...+.+. ....+|.. + ..+++|++|++++|... . ++ .++.+++|+.|+++++ .+..+..
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~-~-~~l~~L~~L~ls~n~l~-~-l~-------~~~~l~~L~~L~l~~n-~l~~l~~--- 87 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDAT-L-STLKACKHLALSTNNIE-K-IS-------SLSGMENLRILSLGRN-LIKKIEN--- 87 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHH-H-HHTTTCSEEECSEEEES-C-CC-------CHHHHTTCCEEEEEEE-EECSCSS---
T ss_pred cchheeEeccccCcHhhhhHH-H-hcCCCCCEEECCCCCCc-c-cc-------ccccCCCCCEEECCCC-Ccccccc---
Confidence 34666666665 23556655 4 48999999999998655 3 22 2557899999999886 4554421
Q ss_pred ccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecCccchhhccCCcc
Q 041465 113 KLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGCSAMTEVVINGKE 192 (216)
Q Consensus 113 ~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~ 192 (216)
....+++|+.|++++| .++.++ . +..+++|++|+++++. ++.+........+++|++|++++|+ +...+.....
T Consensus 88 -~~~~~~~L~~L~L~~N-~l~~l~-~-~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~ 161 (198)
T 1ds9_A 88 -LDAVADTLEELWISYN-QIASLS-G-IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNA 161 (198)
T ss_dssp -HHHHHHHCSEEEEEEE-ECCCHH-H-HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTT
T ss_pred -hhhcCCcCCEEECcCC-cCCcCC-c-cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc-cccccccccc
Confidence 1124689999999998 466653 3 6678999999999885 6654322345688999999999996 4333322100
Q ss_pred -cc-c-cceeecccccceec
Q 041465 193 -GV-E-KEEIVFCKLKALIL 209 (216)
Q Consensus 193 -~~-~-~~~~~~~~L~~L~l 209 (216)
.. . ..-..+|+|+.|+-
T Consensus 162 ~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 162 TSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHHHHHHHHHCSSCSEECC
T ss_pred hHHHHHHHHHhCCCcEEECC
Confidence 00 0 00124678887763
No 143
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.23 E-value=1e-06 Score=73.21 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=31.1
Q ss_pred cCCcccEEEEecCcCceeecCC--CcccCCCccEEEEecCCCCcccCC---chHHhhccCCcEEEEecCc
Q 041465 117 IFQYLEILKVYHCQSLLILLPS--SSVSFRNLTKLVAFGCKKLLHMVT---SSTAKTLVQLVTVSICGCS 181 (216)
Q Consensus 117 ~l~~L~~L~i~~c~~L~~l~~~--~~~~l~~L~~L~i~~C~~L~~l~~---~~~~~~l~~L~~L~i~~C~ 181 (216)
.+++|+.|.+.+|.--...... ....+++|++|+++.+ .+...-. ......+++|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 3567777777666532111000 0123567777777543 3443100 0112345677777776663
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.93 E-value=2.7e-07 Score=77.02 Aligned_cols=169 Identities=16% Similarity=0.020 Sum_probs=94.0
Q ss_pred cccccceEEcccccccccccCCCCc---cccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccc
Q 041465 7 IVPNLKELSLSGKDVKLILQADFPQ---HFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCL 83 (216)
Q Consensus 7 ~~p~Le~L~l~~~~l~~i~~~~~~~---~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~ 83 (216)
+.++|++|+++++.+.......+.. ...++|+.|++++|.........+...+++|++|++++|... .... . ..
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~-~~~~-~-~L 146 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG-PEAC-K-DL 146 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC-HHHH-H-HH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC-HHHH-H-HH
Confidence 4678999999887765321111110 123689999999986532211113446678999999888654 1100 0 00
Q ss_pred cccc-cccccccEEecCcccccceecccCc-ccCCcCCcccEEEEecCcCceeec----CCCcccCCCccEEEEecCCCC
Q 041465 84 EKHV-GKLAMIKTLELNRHYHLKQLCKQDS-KLGPIFQYLEILKVYHCQSLLILL----PSSSVSFRNLTKLVAFGCKKL 157 (216)
Q Consensus 84 ~~~~-~~l~~L~~L~l~~~~~L~~l~~~~~-~~~~~l~~L~~L~i~~c~~L~~l~----~~~~~~l~~L~~L~i~~C~~L 157 (216)
.... ...++|++|+++++. +........ ......++|++|++++|. +.... ...+...++|++|++++|. +
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i 223 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-A 223 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-C
T ss_pred HHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-C
Confidence 0001 135788999998873 433211110 001246778999988876 43210 1112346789999998884 5
Q ss_pred cccCCc---hHHhhccCCcEEEEecCc
Q 041465 158 LHMVTS---STAKTLVQLVTVSICGCS 181 (216)
Q Consensus 158 ~~l~~~---~~~~~l~~L~~L~i~~C~ 181 (216)
+..... ......++|++|++++|+
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 432111 122355789999998885
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.87 E-value=2e-05 Score=64.50 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=35.0
Q ss_pred cccceEEccc-ccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 9 PNLKELSLSG-KDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 9 p~Le~L~l~~-~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
.+|++|+|++ +.+..+.++.+ ..+++|+.|++++|....+|.. .+..+++|++|++++|...
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDL--RGLGELRNLTIVKSGLRFVAPD-AFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGS--CSCCCCSEEECCSSCCCEECTT-GGGSCSCCCEEECCSSCCS
T ss_pred CCeeEEEccCCCCCCCcChhHh--ccccCCCEEECCCCccceeCHH-HhcCCcCCCEEeCCCCccc
Confidence 4566666664 66655443333 2356666666666655545443 3346666666666665544
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=1.9e-05 Score=65.55 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=39.2
Q ss_pred ccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceee----cCCCcccCCCccEEEEecCC
Q 041465 89 KLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLIL----LPSSSVSFRNLTKLVAFGCK 155 (216)
Q Consensus 89 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l----~~~~~~~l~~L~~L~i~~C~ 155 (216)
.+|+|+.|.+.+|.--... .......+.+++|+.|+++.+ .+... ....+..+++|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~-~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVV-VEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHH-HHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHH-HHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 4788888888765321110 000011135789999999765 45541 11113568999999999884
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.81 E-value=5.5e-05 Score=61.82 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=71.0
Q ss_pred eEEcccc-cccccccCCCCccccCCccEEEEec-CCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccccccc
Q 041465 13 ELSLSGK-DVKLILQADFPQHFFGSLRELEIAE-DNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKL 90 (216)
Q Consensus 13 ~L~l~~~-~l~~i~~~~~~~~~~~~L~~L~i~~-c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l 90 (216)
.++.+++ ++..+.. + ..+++|+.|++++ +....+|.. .+..+++|++|++++|... .+.+ ..++.+
T Consensus 12 ~v~~~~~n~l~~ip~--l--~~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~-~~~~------~~~~~l 79 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--L--PGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLR-FVAP------DAFHFT 79 (347)
T ss_dssp CEECCSSCCCTTTTT--S--CSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSCCC-EECT------TGGGSC
T ss_pred EEEcCCCCCCCccCC--C--CCCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCCccc-eeCH------HHhcCC
Confidence 4566665 7777543 3 3467899999996 777777765 4568999999999998766 5544 235678
Q ss_pred ccccEEecCcccccceecccCcccCCcCCcccEEEEecCc
Q 041465 91 AMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQ 130 (216)
Q Consensus 91 ~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~ 130 (216)
++|+.|+|++. +|..+....+. .++ |+.|.+.+++
T Consensus 80 ~~L~~L~l~~N-~l~~~~~~~~~---~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 80 PRLSRLNLSFN-ALESLSWKTVQ---GLS-LQELVLSGNP 114 (347)
T ss_dssp SCCCEEECCSS-CCSCCCSTTTC---SCC-CCEEECCSSC
T ss_pred cCCCEEeCCCC-ccceeCHHHcc---cCC-ceEEEeeCCC
Confidence 99999999885 57666433221 233 8888887754
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.77 E-value=0.00031 Score=58.95 Aligned_cols=59 Identities=12% Similarity=0.207 Sum_probs=30.9
Q ss_pred ccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEec
Q 041465 87 VGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFG 153 (216)
Q Consensus 87 ~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~ 153 (216)
+..+++|+.+.+.+ +++.+....+.. .+|+.+.+.+ +++.+...++..+++|+.+.+.+
T Consensus 222 F~~~~~L~~l~l~~--~l~~I~~~aF~~----~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 222 FLKTSQLKTIEIPE--NVSTIGQEAFRE----SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp TTTCTTCCCEECCT--TCCEECTTTTTT----CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEES
T ss_pred hhCCCCCCEEecCC--CccCcccccccc----CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCC
Confidence 34566777777654 455554443321 4566666632 34444444344455666666543
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.36 E-value=0.004 Score=52.20 Aligned_cols=149 Identities=14% Similarity=0.060 Sum_probs=68.7
Q ss_pred cccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccccc
Q 041465 9 PNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVG 88 (216)
Q Consensus 9 p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~ 88 (216)
.+|+.+.+.. +++.|....+ ..+++|+.+.+.+. ...++.. .+.. .+|+.+.+.+. +..+-. ..+.
T Consensus 203 ~~L~~l~lp~-~l~~I~~~aF--~~~~~L~~l~l~~~-l~~I~~~-aF~~-~~L~~i~lp~~--i~~I~~------~aF~ 268 (401)
T 4fdw_A 203 AGIEEVLLPV-TLKEIGSQAF--LKTSQLKTIEIPEN-VSTIGQE-AFRE-SGITTVKLPNG--VTNIAS------RAFY 268 (401)
T ss_dssp CCCSEEECCT-TCCEECTTTT--TTCTTCCCEECCTT-CCEECTT-TTTT-CCCSEEEEETT--CCEECT------TTTT
T ss_pred cccCEEEeCC-chheehhhHh--hCCCCCCEEecCCC-ccCcccc-cccc-CCccEEEeCCC--ccEECh------hHhh
Confidence 5677777753 3555444333 23566777777653 2333333 2223 56666666321 212211 1233
Q ss_pred ccccccEEecCccc----ccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCch
Q 041465 89 KLAMIKTLELNRHY----HLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSS 164 (216)
Q Consensus 89 ~l~~L~~L~l~~~~----~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~ 164 (216)
.+++|+.+.+.+.. ....+....+. .+++|+.+.+.+ +++.+...++..+++|+.+.+.. +++.+.. .
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~---~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~-~ 340 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLE---GCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINF-S 340 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTT---TCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECT-T
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhh---CCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcH-H
Confidence 45666666554311 11223322222 345555555552 35555444333455666666643 2444322 2
Q ss_pred HHhhccCCcEEEEecC
Q 041465 165 TAKTLVQLVTVSICGC 180 (216)
Q Consensus 165 ~~~~l~~L~~L~i~~C 180 (216)
...++ +|+++.+.+.
T Consensus 341 aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGT 355 (401)
T ss_dssp SSSSS-CCCEEEECCS
T ss_pred hCCCC-CCCEEEEcCC
Confidence 22334 5666665544
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.13 E-value=0.00014 Score=57.79 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=32.6
Q ss_pred ccCCccEEEEecCCCCC---cChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCccc
Q 041465 33 FFGSLRELEIAEDNSAC---FPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHY 102 (216)
Q Consensus 33 ~~~~L~~L~i~~c~~~~---~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 102 (216)
.+++|+.|++++|.... +|. .++.+++|+.|++++|... .+ . .. ..+..+ +|++|.+++.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~--~~~~l~~L~~L~Ls~N~i~-~~-~--~l--~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSS--IVQKAPNLKILNLSGNELK-SE-R--EL--DKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTT--HHHHSTTCCEEECTTSCCC-SG-G--GG--GGGTTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchh--HHhhCCCCCEEECCCCccC-Cc-h--hh--hhcccC-CcceEEccCCc
Confidence 36677777777775433 333 2346777777777666544 21 1 00 011122 67777776654
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.08 E-value=3e-05 Score=64.52 Aligned_cols=144 Identities=13% Similarity=-0.029 Sum_probs=86.4
Q ss_pred cccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHH----hhCCCCcEEEEeecCCceeEeccCcccc
Q 041465 9 PNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVL----ERFHNLEKLILVCFSFNEEVFSEEGCLE 84 (216)
Q Consensus 9 p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~----~~l~~L~~L~i~~c~~~e~~~~~~~~~~ 84 (216)
++|++|+++++.+.......+ ...+++|+.|++++|.........+. ...++|++|++++|... .... ....
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l-~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~-~~~~--~~l~ 176 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTL-LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT-AAGV--AVLM 176 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHT-HHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCH-HHHH--HHHH
T ss_pred CCceEEEecCCCCCHHHHHHH-HHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCC-hHHH--HHHH
Confidence 689999999987653211111 13477999999999965433222021 24688999999999754 1100 0000
Q ss_pred ccccccccccEEecCcccccceecccC-cccCCcCCcccEEEEecCcCceeec----CCCcccCCCccEEEEecCCCCcc
Q 041465 85 KHVGKLAMIKTLELNRHYHLKQLCKQD-SKLGPIFQYLEILKVYHCQSLLILL----PSSSVSFRNLTKLVAFGCKKLLH 159 (216)
Q Consensus 85 ~~~~~l~~L~~L~l~~~~~L~~l~~~~-~~~~~~l~~L~~L~i~~c~~L~~l~----~~~~~~l~~L~~L~i~~C~~L~~ 159 (216)
..+...++|++|+++++. +....... .......++|+.|++++|. ++... .......++|++|++++|. +..
T Consensus 177 ~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~ 253 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE-LSS 253 (372)
T ss_dssp HHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS-CCH
T ss_pred HHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC-CCH
Confidence 122457899999999874 43321110 0011245789999999985 43211 0112246899999999985 543
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.90 E-value=0.031 Score=39.04 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=31.9
Q ss_pred cCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCc
Q 041465 34 FGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFN 73 (216)
Q Consensus 34 ~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~ 73 (216)
.++|+.|++++|....+|.. .+..+++|++|++.+|++.
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPG-LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTT-TGGGCTTCCEEECCSSCCB
T ss_pred CcCCCEEECCCCcCCccChh-hhhhccccCEEEecCCCee
Confidence 35799999999988888877 6678899999999877654
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.73 E-value=0.027 Score=44.51 Aligned_cols=65 Identities=22% Similarity=0.053 Sum_probs=41.1
Q ss_pred hhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCc
Q 041465 57 ERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQ 130 (216)
Q Consensus 57 ~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~ 130 (216)
..+++|++|++++|... .+-+. +..++.+++|+.|++++. ++..+.. ......+ +|++|.+.+++
T Consensus 167 ~~l~~L~~L~Ls~N~l~-~l~~l----~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLY-RLDDM----SSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCC-CCGGG----TTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTS-CCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCC-CCccc----hhHHhhCCCCCEEECCCC-ccCCchh--hhhcccC-CcceEEccCCc
Confidence 47899999999988765 32110 112346899999999774 4444311 1111123 89999999887
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.91 E-value=0.61 Score=38.35 Aligned_cols=80 Identities=10% Similarity=0.000 Sum_probs=45.9
Q ss_pred ccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhh
Q 041465 89 KLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKT 168 (216)
Q Consensus 89 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 168 (216)
.+.+|+.+.+.+ +++.+....+. .+++|+.+.+.+ +++.+...+...+.+|+.+.+.. +++.+. .....+
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~---~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~-~~aF~~ 364 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFE---SCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIG-ANAFQG 364 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTT---TCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEEC-TTTBTT
T ss_pred cccccccccccc--ccceechhhhc---CCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEeh-HHHhhC
Confidence 456677766643 46666544332 356777777653 35666554444567777777653 255543 233456
Q ss_pred ccCCcEEEEe
Q 041465 169 LVQLVTVSIC 178 (216)
Q Consensus 169 l~~L~~L~i~ 178 (216)
+.+|+++.+.
T Consensus 365 C~~L~~i~lp 374 (394)
T 4fs7_A 365 CINLKKVELP 374 (394)
T ss_dssp CTTCCEEEEE
T ss_pred CCCCCEEEEC
Confidence 6677777664
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.92 E-value=0.77 Score=37.74 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=42.6
Q ss_pred ccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEec
Q 041465 87 VGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFG 153 (216)
Q Consensus 87 ~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~ 153 (216)
+..+.+|+.+.|.+ +++.|....+. .+++|+.+.+.+ +++.+...+...+++|+.+++..
T Consensus 316 F~~c~~L~~i~lp~--~v~~I~~~aF~---~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 316 FESCTSLVSIDLPY--LVEEIGKRSFR---GCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTTT---TCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred hcCCCCCCEEEeCC--cccEEhHHhcc---CCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 45678999998854 57787655443 477888888864 37777665555678888888764
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.17 E-value=1.6 Score=35.74 Aligned_cols=106 Identities=8% Similarity=0.082 Sum_probs=63.9
Q ss_pred hhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeec
Q 041465 57 ERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILL 136 (216)
Q Consensus 57 ~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~ 136 (216)
....+|+.+.+.+.. . .+.. ..+..+++|+.+.+.. +++.+....+. .+.+|+.+.+.+ +++.+.
T Consensus 262 ~~c~~L~~i~lp~~~-~-~I~~------~aF~~c~~L~~i~l~~--~i~~I~~~aF~---~c~~L~~i~lp~--~v~~I~ 326 (394)
T 4gt6_A 262 DSCAYLASVKMPDSV-V-SIGT------GAFMNCPALQDIEFSS--RITELPESVFA---GCISLKSIDIPE--GITQIL 326 (394)
T ss_dssp TTCSSCCEEECCTTC-C-EECT------TTTTTCTTCCEEECCT--TCCEECTTTTT---TCTTCCEEECCT--TCCEEC
T ss_pred eecccccEEeccccc-c-eecC------cccccccccccccCCC--cccccCceeec---CCCCcCEEEeCC--cccEeh
Confidence 356677777664321 1 2211 1234577788887753 56666554443 467788877764 466665
Q ss_pred CCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEecC
Q 041465 137 PSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSICGC 180 (216)
Q Consensus 137 ~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 180 (216)
..+...+.+|+++.+.. +++.+- .....++.+|+.+.+.+.
T Consensus 327 ~~aF~~C~~L~~i~ip~--sv~~I~-~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPS--SVTKIP-ESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTTTCTTCCEEEECT--TCCBCC-GGGGTTCTTCCEEEESSC
T ss_pred HhHhhCCCCCCEEEECc--ccCEEh-HhHhhCCCCCCEEEECCc
Confidence 55445667888888853 355543 334567788888887654
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.12 E-value=0.34 Score=33.57 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=32.0
Q ss_pred ccccc-cccceEEcccccccccccCCCCccccCCccEEEEecCCC
Q 041465 4 DDQIV-PNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNS 47 (216)
Q Consensus 4 ~~~~~-p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~ 47 (216)
++..+ ++|++|+|++|.++.+.++.+ ..+++|+.|++.+|.-
T Consensus 25 vP~~lp~~l~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 25 LPTAFPVDTTELVLTGNNLTALPPGLL--DALPALRTAHLGANPW 67 (130)
T ss_dssp SCSCCCTTCSEEECTTSCCSSCCTTTG--GGCTTCCEEECCSSCC
T ss_pred CCCCCCcCCCEEECCCCcCCccChhhh--hhccccCEEEecCCCe
Confidence 34334 489999999999988765544 3578999999999853
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.08 E-value=2.7 Score=34.03 Aligned_cols=125 Identities=13% Similarity=0.127 Sum_probs=71.1
Q ss_pred cccceEEcccccccccccCCCCccccCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCcccccccc
Q 041465 9 PNLKELSLSGKDVKLILQADFPQHFFGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVG 88 (216)
Q Consensus 9 p~Le~L~l~~~~l~~i~~~~~~~~~~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~ 88 (216)
.+|+.+.+.. +++.+....+ ..+.+|+.+.+... ...+... .+....+|+.+.+... ++.+ +. ..+.
T Consensus 217 ~~l~~i~~~~-~~~~i~~~~f--~~~~~L~~i~lp~~-v~~I~~~-aF~~~~~l~~i~l~~~--i~~i-~~-----~aF~ 283 (379)
T 4h09_A 217 KNLKKITITS-GVTTLGDGAF--YGMKALDEIAIPKN-VTSIGSF-LLQNCTALKTLNFYAK--VKTV-PY-----LLCS 283 (379)
T ss_dssp SSCSEEECCT-TCCEECTTTT--TTCSSCCEEEECTT-CCEECTT-TTTTCTTCCEEEECCC--CSEE-CT-----TTTT
T ss_pred cccceeeecc-ceeEEccccc--cCCccceEEEcCCC-ccEeCcc-ccceeehhcccccccc--ceec-cc-----cccc
Confidence 4566666644 3333332222 23577888888655 2334433 3447788888888542 2122 21 1244
Q ss_pred ccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEe
Q 041465 89 KLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAF 152 (216)
Q Consensus 89 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~ 152 (216)
.+++|+.+.+.+. .++.|....+. .+.+|+.+.+.+ +++.+...+...+.+|+.+.+.
T Consensus 284 ~c~~L~~i~l~~~-~i~~I~~~aF~---~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 284 GCSNLTKVVMDNS-AIETLEPRVFM---DCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEEECCT-TCCEECTTTTT---TCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccc-ccceehhhhhc---CCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 6788888887542 46666554443 467788887753 4666655434455667766654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=87.67 E-value=3.6 Score=33.27 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=78.3
Q ss_pred cCCccEEEEecCCCCCcChHHHHhhCCCCcEEEEeecCCceeEeccCccccccccccccccEEecCcccccceecccCcc
Q 041465 34 FGSLRELEIAEDNSACFPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCLEKHVGKLAMIKTLELNRHYHLKQLCKQDSK 113 (216)
Q Consensus 34 ~~~L~~L~i~~c~~~~~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 113 (216)
..+|+.+.+...- ..++.. ......+|+.+.+..+ ++.+-. ..+..+.+|+.+.+.. +++.+....+.
T Consensus 216 ~~~l~~i~~~~~~-~~i~~~-~f~~~~~L~~i~lp~~--v~~I~~------~aF~~~~~l~~i~l~~--~i~~i~~~aF~ 283 (379)
T 4h09_A 216 GKNLKKITITSGV-TTLGDG-AFYGMKALDEIAIPKN--VTSIGS------FLLQNCTALKTLNFYA--KVKTVPYLLCS 283 (379)
T ss_dssp CSSCSEEECCTTC-CEECTT-TTTTCSSCCEEEECTT--CCEECT------TTTTTCTTCCEEEECC--CCSEECTTTTT
T ss_pred ccccceeeeccce-eEEccc-cccCCccceEEEcCCC--ccEeCc------cccceeehhccccccc--cceeccccccc
Confidence 5678888775542 233333 3347788999888653 312211 1344678888888854 57776544333
Q ss_pred cCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhhccCCcEEEEe
Q 041465 114 LGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKTLVQLVTVSIC 178 (216)
Q Consensus 114 ~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~ 178 (216)
.+++|+.+.+.+. .++.+...+.....+|+.+.+.. +++.+-. ....++.+|+++.|-
T Consensus 284 ---~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 284 ---GCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQV-YAFKNCKALSTISYP 341 (379)
T ss_dssp ---TCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCCCCCC
T ss_pred ---ccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHH-HHhhCCCCCCEEEEC
Confidence 4788999988653 36667665455678899988863 4665532 334566777777663
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=86.36 E-value=0.16 Score=37.34 Aligned_cols=113 Identities=12% Similarity=0.011 Sum_probs=52.1
Q ss_pred cCCccEEEEecC-CCCC-----cChHHHHhhCCCCcEEEEeecCCceeEeccCccc--cccccccccccEEecCcccccc
Q 041465 34 FGSLRELEIAED-NSAC-----FPIWNVLERFHNLEKLILVCFSFNEEVFSEEGCL--EKHVGKLAMIKTLELNRHYHLK 105 (216)
Q Consensus 34 ~~~L~~L~i~~c-~~~~-----~p~~~~~~~l~~L~~L~i~~c~~~e~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~L~ 105 (216)
.++|++|++++| .... +.. .+...++|++|++++|..- . .|.. ...+...++|++|+++++. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~--~L~~~~~L~~L~Ls~n~i~-~----~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAE--ALKTNTYVKKFSIVGTRSN-D----PVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHH--HHTTCCSCCEEECTTSCCC-H----HHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHH--HHHhCCCcCEEECcCCCCC-h----HHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 466777777776 4321 111 2234567777777776543 1 1100 0112234667777777652 22
Q ss_pred eecccC-cccCCcCCcccEEEE--ecCcCceeec----CCCcccCCCccEEEEecCC
Q 041465 106 QLCKQD-SKLGPIFQYLEILKV--YHCQSLLILL----PSSSVSFRNLTKLVAFGCK 155 (216)
Q Consensus 106 ~l~~~~-~~~~~~l~~L~~L~i--~~c~~L~~l~----~~~~~~l~~L~~L~i~~C~ 155 (216)
.-+... .......++|++|++ +++. +..-. ...+...++|++|++++|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 110000 001123456888888 4443 32110 0001234566677666653
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=84.80 E-value=5.1 Score=32.71 Aligned_cols=80 Identities=10% Similarity=0.030 Sum_probs=51.4
Q ss_pred ccccccEEecCcccccceecccCcccCCcCCcccEEEEecCcCceeecCCCcccCCCccEEEEecCCCCcccCCchHHhh
Q 041465 89 KLAMIKTLELNRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFRNLTKLVAFGCKKLLHMVTSSTAKT 168 (216)
Q Consensus 89 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 168 (216)
.+.+|+.+.+.+ .+..+....+ ..+++|+.+.+. .+++.+...+.....+|+.+.+.. +++.+.. ....+
T Consensus 263 ~c~~L~~i~lp~--~~~~I~~~aF---~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-~aF~~ 332 (394)
T 4gt6_A 263 SCAYLASVKMPD--SVVSIGTGAF---MNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILD-DAFAG 332 (394)
T ss_dssp TCSSCCEEECCT--TCCEECTTTT---TTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTT
T ss_pred ecccccEEeccc--ccceecCccc---ccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehH-hHhhC
Confidence 456777777643 3445544333 246778888875 356777655455678999998864 4666532 34467
Q ss_pred ccCCcEEEEe
Q 041465 169 LVQLVTVSIC 178 (216)
Q Consensus 169 l~~L~~L~i~ 178 (216)
+.+|+++.|-
T Consensus 333 C~~L~~i~ip 342 (394)
T 4gt6_A 333 CEQLERIAIP 342 (394)
T ss_dssp CTTCCEEEEC
T ss_pred CCCCCEEEEC
Confidence 7888888874
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=71.29 E-value=1.5 Score=32.00 Aligned_cols=87 Identities=10% Similarity=0.107 Sum_probs=53.4
Q ss_pred ccccceEEcccccccccccCCCCc--cccCCccEEEEecCCCCC-----cChHHHHhhCCCCcEEEE--eecCCceeEec
Q 041465 8 VPNLKELSLSGKDVKLILQADFPQ--HFFGSLRELEIAEDNSAC-----FPIWNVLERFHNLEKLIL--VCFSFNEEVFS 78 (216)
Q Consensus 8 ~p~Le~L~l~~~~l~~i~~~~~~~--~~~~~L~~L~i~~c~~~~-----~p~~~~~~~l~~L~~L~i--~~c~~~e~~~~ 78 (216)
.++|++|+|+++.+..--...+.. ...++|++|++++|.... +.. .+...++|++|++ ++|..- .
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~--~L~~n~~L~~L~L~~~~N~i~-~--- 137 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE--ALQSNTSLIELRIDNQSQPLG-N--- 137 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH--GGGGCSSCCEEECCCCSSCCC-H---
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH--HHHhCCCceEEEecCCCCCCC-H---
Confidence 478999999997764311000100 124789999999996532 222 2346689999999 666543 1
Q ss_pred cCcc--ccccccccccccEEecCcc
Q 041465 79 EEGC--LEKHVGKLAMIKTLELNRH 101 (216)
Q Consensus 79 ~~~~--~~~~~~~l~~L~~L~l~~~ 101 (216)
.|. ....+...++|++|+++++
T Consensus 138 -~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 138 -NVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp -HHHHHHHHHHHHCSSCCEEECCCS
T ss_pred -HHHHHHHHHHHhCCCcCEEeccCC
Confidence 111 0112334688999999876
Done!