Query 041466
Match_columns 824
No_of_seqs 302 out of 1879
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:24:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0323 MutL DNA mismatch repa 100.0 4.2E-91 9E-96 817.5 47.8 533 9-816 1-637 (638)
2 PRK00095 mutL DNA mismatch rep 100.0 3.4E-86 7.3E-91 779.9 48.9 512 11-817 2-617 (617)
3 KOG1978 DNA mismatch repair pr 100.0 2.6E-84 5.7E-89 729.6 36.1 569 12-812 1-671 (672)
4 KOG1979 DNA mismatch repair pr 100.0 6.8E-48 1.5E-52 423.8 17.0 234 9-248 5-341 (694)
5 TIGR00585 mutl DNA mismatch re 100.0 3.6E-42 7.7E-47 376.6 21.3 209 11-224 2-312 (312)
6 KOG1977 DNA mismatch repair pr 100.0 9E-40 1.9E-44 363.3 30.6 205 602-820 898-1114(1142)
7 PF08676 MutL_C: MutL C termin 100.0 2.4E-31 5.1E-36 259.1 14.2 141 616-776 2-144 (144)
8 cd03483 MutL_Trans_MLH1 MutL_T 100.0 1E-30 2.2E-35 249.0 12.9 121 119-243 1-126 (127)
9 cd03485 MutL_Trans_hPMS_1_like 100.0 8.2E-30 1.8E-34 244.6 14.4 124 119-243 1-131 (132)
10 cd03482 MutL_Trans_MutL MutL_T 100.0 2.2E-29 4.7E-34 238.6 13.0 120 121-243 2-122 (123)
11 PF01119 DNA_mis_repair: DNA m 100.0 3.1E-29 6.7E-34 236.4 12.6 117 124-243 1-118 (119)
12 cd03484 MutL_Trans_hPMS_2_like 100.0 5.4E-28 1.2E-32 234.6 14.6 124 119-243 1-141 (142)
13 cd03486 MutL_Trans_MLH3 MutL_T 99.9 1.6E-27 3.4E-32 231.3 13.3 120 119-243 1-140 (141)
14 cd00782 MutL_Trans MutL_Trans: 99.9 1.9E-27 4.2E-32 225.1 12.7 120 121-243 2-122 (122)
15 smart00853 MutL_C MutL C termi 99.9 5.5E-24 1.2E-28 205.1 15.1 131 617-765 2-136 (136)
16 PRK14867 DNA topoisomerase VI 99.8 1E-18 2.3E-23 203.5 15.9 167 32-211 37-308 (659)
17 cd00329 TopoII_MutL_Trans MutL 99.8 2.2E-18 4.7E-23 158.2 9.3 101 121-224 2-107 (107)
18 smart00433 TOP2c Topoisomerase 99.2 9.9E-11 2.1E-15 138.6 14.7 195 34-243 4-326 (594)
19 PRK05218 heat shock protein 90 99.2 7.7E-11 1.7E-15 139.9 12.8 192 27-242 22-344 (613)
20 PRK14868 DNA topoisomerase VI 99.1 5.1E-11 1.1E-15 139.8 7.5 118 32-158 47-271 (795)
21 PRK05559 DNA topoisomerase IV 99.0 8.7E-09 1.9E-13 122.8 17.8 217 11-244 12-363 (631)
22 TIGR01059 gyrB DNA gyrase, B s 99.0 2.5E-08 5.3E-13 119.8 21.2 220 12-244 6-358 (654)
23 TIGR01055 parE_Gneg DNA topois 99.0 9.3E-09 2E-13 122.2 16.3 220 11-244 8-358 (625)
24 PRK05644 gyrB DNA gyrase subun 99.0 1.6E-08 3.4E-13 120.6 18.3 220 11-243 12-364 (638)
25 PF13589 HATPase_c_3: Histidin 98.8 1.7E-09 3.6E-14 104.7 1.0 49 31-79 2-52 (137)
26 PRK14939 gyrB DNA gyrase subun 98.7 1.8E-07 3.9E-12 112.5 17.5 218 11-244 11-363 (756)
27 TIGR01052 top6b DNA topoisomer 98.6 1.2E-07 2.7E-12 108.6 9.2 53 30-82 27-86 (488)
28 PRK04184 DNA topoisomerase VI 98.5 2.2E-07 4.8E-12 107.6 9.2 50 32-81 37-95 (535)
29 COG1389 DNA topoisomerase VI, 98.0 1.2E-05 2.7E-10 89.2 7.9 52 31-82 36-94 (538)
30 TIGR01058 parE_Gpos DNA topois 97.7 0.00063 1.4E-08 81.5 16.8 63 11-75 9-80 (637)
31 PF02518 HATPase_c: Histidine 97.6 0.00012 2.7E-09 67.4 6.3 73 30-103 4-98 (111)
32 PRK14083 HSP90 family protein; 97.5 7.8E-05 1.7E-09 88.5 4.2 56 25-80 17-82 (601)
33 COG3290 CitA Signal transducti 97.0 0.0018 3.9E-08 74.5 8.5 63 20-82 416-484 (537)
34 COG0642 BaeS Signal transducti 96.6 0.0097 2.1E-07 63.6 9.9 72 31-103 228-317 (336)
35 TIGR02938 nifL_nitrog nitrogen 96.5 0.0072 1.6E-07 69.4 9.0 74 32-106 388-485 (494)
36 PRK10604 sensor protein RstB; 96.4 0.012 2.7E-07 67.6 9.6 49 32-80 320-369 (433)
37 PRK11086 sensory histidine kin 96.3 0.015 3.3E-07 68.2 10.0 76 30-106 432-526 (542)
38 PRK15053 dpiB sensor histidine 96.3 0.017 3.7E-07 68.2 10.2 75 31-106 432-530 (545)
39 PRK10364 sensor protein ZraS; 96.3 0.014 3.1E-07 67.4 9.3 50 31-80 348-400 (457)
40 cd00075 HATPase_c Histidine ki 96.2 0.0084 1.8E-07 52.4 5.6 47 32-78 1-51 (103)
41 PRK10755 sensor protein BasS/P 96.2 0.023 5E-07 63.2 10.3 71 32-103 248-337 (356)
42 PRK09467 envZ osmolarity senso 96.2 0.018 3.9E-07 65.8 9.5 47 32-78 332-379 (435)
43 TIGR01386 cztS_silS_copS heavy 96.0 0.027 5.8E-07 64.5 10.0 47 32-78 354-403 (457)
44 PRK09303 adaptive-response sen 96.0 0.023 5.1E-07 64.3 9.3 50 32-81 273-326 (380)
45 PRK11006 phoR phosphate regulo 95.9 0.029 6.2E-07 64.4 9.4 75 31-106 317-414 (430)
46 PRK11100 sensory histidine kin 95.8 0.048 1E-06 62.6 10.8 50 31-80 368-420 (475)
47 PRK09470 cpxA two-component se 95.8 0.037 8E-07 63.5 9.7 47 32-78 354-401 (461)
48 PTZ00272 heat shock protein 83 95.8 0.0051 1.1E-07 74.3 2.6 48 31-78 25-89 (701)
49 PRK10815 sensor protein PhoQ; 95.7 0.037 8E-07 64.9 9.5 49 32-80 379-428 (485)
50 smart00387 HATPase_c Histidine 95.7 0.11 2.3E-06 46.0 10.4 48 31-78 5-55 (111)
51 COG4191 Signal transduction hi 95.6 0.014 3E-07 67.9 5.0 53 30-82 496-553 (603)
52 TIGR02916 PEP_his_kin putative 95.5 0.045 9.7E-07 66.9 9.4 74 32-106 580-671 (679)
53 PRK10549 signal transduction h 95.4 0.071 1.5E-06 61.4 10.0 49 32-80 353-404 (466)
54 PRK11644 sensory histidine kin 95.4 0.067 1.5E-06 62.9 9.9 69 32-101 411-482 (495)
55 PTZ00130 heat shock protein 90 95.3 0.0067 1.5E-07 73.6 1.4 53 26-78 83-152 (814)
56 COG0187 GyrB Type IIA topoisom 95.3 0.0069 1.5E-07 70.8 1.4 86 10-105 9-104 (635)
57 PTZ00109 DNA gyrase subunit b; 95.1 0.01 2.2E-07 72.6 1.9 85 11-105 104-197 (903)
58 PRK13560 hypothetical protein; 95.0 0.088 1.9E-06 64.9 10.0 69 33-102 713-792 (807)
59 PRK10337 sensor protein QseC; 95.0 0.071 1.5E-06 61.2 8.5 46 32-80 353-400 (449)
60 PRK15347 two component system 95.0 0.084 1.8E-06 66.5 9.8 51 31-81 513-565 (921)
61 PRK10600 nitrate/nitrite senso 94.9 0.14 3E-06 61.2 10.9 74 32-106 470-547 (569)
62 PRK11360 sensory histidine kin 94.8 0.12 2.6E-06 60.9 10.1 75 31-106 500-592 (607)
63 PRK13837 two-component VirA-li 94.8 0.11 2.3E-06 65.1 9.9 73 31-104 560-664 (828)
64 PHA02569 39 DNA topoisomerase 94.5 0.023 5.1E-07 67.9 3.1 44 29-75 43-93 (602)
65 TIGR03785 marine_sort_HK prote 94.5 0.16 3.5E-06 62.4 10.2 51 31-81 597-650 (703)
66 PRK11073 glnL nitrogen regulat 94.4 0.12 2.6E-06 57.1 8.2 72 31-103 237-336 (348)
67 PRK10618 phosphotransfer inter 94.3 0.14 3.1E-06 64.3 9.4 50 31-80 565-619 (894)
68 PRK10547 chemotaxis protein Ch 94.3 0.33 7.2E-06 58.9 12.1 45 33-77 387-446 (670)
69 TIGR02966 phoR_proteo phosphat 94.2 0.25 5.4E-06 53.5 10.1 48 32-79 230-280 (333)
70 PRK10490 sensor protein KdpD; 94.2 0.17 3.6E-06 63.9 9.8 73 32-105 779-872 (895)
71 PRK11091 aerobic respiration c 93.9 0.21 4.5E-06 62.0 9.7 51 31-81 398-451 (779)
72 PRK11466 hybrid sensory histid 93.8 0.21 4.5E-06 63.1 9.7 50 32-81 562-613 (914)
73 PRK10935 nitrate/nitrite senso 93.7 0.31 6.7E-06 57.7 10.4 82 32-115 472-558 (565)
74 TIGR01925 spIIAB anti-sigma F 93.7 0.1 2.2E-06 49.9 5.2 45 29-73 37-87 (137)
75 PRK11107 hybrid sensory histid 93.5 0.25 5.3E-06 62.3 9.6 51 31-81 408-465 (919)
76 PTZ00108 DNA topoisomerase 2-l 93.5 0.11 2.4E-06 66.9 6.3 67 28-104 54-129 (1388)
77 COG3850 NarQ Signal transducti 93.4 0.12 2.7E-06 59.6 5.9 83 32-117 482-569 (574)
78 TIGR02956 TMAO_torS TMAO reduc 93.2 0.28 6.1E-06 62.2 9.5 51 31-81 579-632 (968)
79 COG3852 NtrB Signal transducti 93.2 0.32 7E-06 52.7 8.2 79 32-111 242-351 (363)
80 COG3275 LytS Putative regulato 92.9 0.41 8.9E-06 54.6 9.0 82 31-116 456-551 (557)
81 PRK09835 sensor kinase CusS; P 92.9 0.48 1E-05 54.7 10.1 71 31-102 375-468 (482)
82 PRK13557 histidine kinase; Pro 92.6 0.35 7.6E-06 56.5 8.6 48 32-79 278-343 (540)
83 PRK13559 hypothetical protein; 92.6 0.58 1.3E-05 52.0 9.9 72 31-102 267-347 (361)
84 COG0326 HtpG Molecular chapero 92.5 0.1 2.2E-06 61.6 3.6 47 31-78 27-91 (623)
85 PRK10841 hybrid sensory kinase 92.4 0.45 9.8E-06 60.4 9.6 49 32-80 563-613 (924)
86 PRK04069 serine-protein kinase 92.3 0.16 3.6E-06 50.4 4.5 51 27-77 38-94 (161)
87 PRK09959 hybrid sensory histid 92.0 0.44 9.6E-06 62.1 9.1 50 31-80 828-884 (1197)
88 COG3920 Signal transduction hi 92.0 0.69 1.5E-05 48.6 8.8 72 31-102 122-204 (221)
89 PLN03128 DNA topoisomerase 2; 91.7 0.22 4.8E-06 63.4 5.6 46 28-75 49-100 (1135)
90 COG2205 KdpD Osmosensitive K+ 91.2 0.95 2.1E-05 55.0 9.8 80 34-115 778-878 (890)
91 PLN03237 DNA topoisomerase 2; 90.8 0.31 6.8E-06 62.9 5.7 45 29-75 75-125 (1465)
92 PRK03660 anti-sigma F factor; 90.5 0.4 8.8E-06 46.3 5.1 47 28-74 36-88 (146)
93 COG4585 Signal transduction hi 90.5 0.38 8.2E-06 54.1 5.5 74 31-105 279-355 (365)
94 TIGR01924 rsbW_low_gc serine-p 90.4 0.45 9.7E-06 47.3 5.3 51 27-77 38-94 (159)
95 COG5002 VicK Signal transducti 89.4 2.6 5.6E-05 46.7 10.3 84 32-117 343-449 (459)
96 PF13581 HATPase_c_2: Histidin 87.1 1 2.3E-05 42.1 5.1 50 28-77 28-83 (125)
97 COG2972 Predicted signal trans 85.5 1.1 2.4E-05 52.1 5.4 50 29-78 348-404 (456)
98 COG4251 Bacteriophytochrome (l 85.2 3.8 8.2E-05 48.6 9.2 73 32-105 637-731 (750)
99 COG0643 CheA Chemotaxis protei 81.6 4.3 9.3E-05 49.8 8.2 54 29-82 430-498 (716)
100 COG3851 UhpB Signal transducti 80.7 2.8 6.1E-05 46.5 5.6 46 30-75 409-456 (497)
101 PF02742 Fe_dep_repr_C: Iron d 78.7 1.5 3.2E-05 37.4 2.3 38 764-804 32-69 (71)
102 COG5000 NtrY Signal transducti 77.1 4.8 0.0001 47.6 6.4 70 32-102 601-694 (712)
103 COG4564 Signal transduction hi 69.6 5.9 0.00013 43.6 4.4 51 27-77 355-407 (459)
104 COG2172 RsbW Anti-sigma regula 61.9 12 0.00026 36.8 4.6 46 29-74 38-90 (146)
105 COG1321 TroR Mn-dependent tran 60.2 8 0.00017 38.3 3.1 37 764-803 96-132 (154)
106 KOG0787 Dehydrogenase kinase [ 55.1 16 0.00035 41.0 4.6 52 29-80 257-320 (414)
107 KOG0020 Endoplasmic reticulum 53.4 12 0.00026 43.1 3.4 44 35-78 99-159 (785)
108 COG4192 Signal transduction hi 49.6 19 0.00041 41.4 4.2 48 31-78 564-616 (673)
109 KOG0355 DNA topoisomerase type 45.7 25 0.00055 43.1 4.7 49 27-76 49-101 (842)
110 KOG1979 DNA mismatch repair pr 44.1 18 0.0004 42.6 3.0 97 612-716 468-589 (694)
111 KOG0019 Molecular chaperone (H 42.8 26 0.00057 41.6 4.0 63 11-78 42-119 (656)
112 KOG3432 Vacuolar H+-ATPase V1 34.7 47 0.001 30.8 3.5 16 635-651 64-79 (121)
113 PF14501 HATPase_c_5: GHKL dom 33.7 2.3E+02 0.0049 25.3 8.0 71 31-103 5-90 (100)
114 PRK13669 hypothetical protein; 28.9 46 0.001 29.2 2.4 41 147-192 31-71 (78)
115 PF03484 B5: tRNA synthetase B 25.1 2E+02 0.0043 24.3 5.7 44 681-732 22-65 (70)
116 PF07293 DUF1450: Protein of u 25.0 70 0.0015 28.1 2.9 41 147-192 31-71 (78)
117 COG1929 Glycerate kinase [Carb 22.3 37 0.0008 38.1 0.8 33 36-73 114-146 (378)
118 COG1654 BirA Biotin operon rep 21.6 1.3E+02 0.0028 26.5 3.9 33 678-714 34-66 (79)
119 PF13986 DUF4224: Domain of un 21.1 1E+02 0.0022 24.3 2.8 22 785-806 21-43 (47)
No 1
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.2e-91 Score=817.50 Aligned_cols=533 Identities=29% Similarity=0.418 Sum_probs=384.7
Q ss_pred CCCcccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCCceEEEEEEeCCeeeEEEEeCCCCcCccchhhhHH------
Q 041466 9 SPTIRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGATSIEIALKEYGEEWFQVVDNGCGISPNNFKVRAV------ 82 (824)
Q Consensus 9 ~~~I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgAt~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l~~------ 82 (824)
|++|+.||+.++|||||||||+||+||||||||||||||||+|+|.+++||+.+|+|+||||||+++|++.++.
T Consensus 1 M~~Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 1 MPKIRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred CCcceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 55799999999999999999999999999999999999999999999999999999999999999999986666
Q ss_pred --------------------------------------------------------------------------------
Q 041466 83 -------------------------------------------------------------------------------- 82 (824)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (824)
T Consensus 81 I~~~~DL~~I~TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~~~~~p~a~~~GTtVeV~dLF~NtPaRrK 160 (638)
T COG0323 81 IASLEDLFRIRTLGFRGEALASIASVSRLTITSRTAEASEGTQIYAEGGGMEVTVKPAAHPVGTTVEVRDLFYNTPARRK 160 (638)
T ss_pred CCchhHHHHhhccCccHHHHHHHHhhheeEEEeecCCcCceEEEEecCCcccccccCCCCCCCCEEEehHhhccChHHHH
Confidence
Q ss_pred -------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhccccccccceeeEeecCCceEE
Q 041466 83 -------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIYNCLEPVAICKSDSCKV 149 (824)
Q Consensus 83 -------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~~~~~l~~i~~~~~~~~~i 149 (824)
++|++|||+||+|+|+|++++ |.. ..++.+++.++..++++.|||..+.+++++++.. .+++++
T Consensus 161 flks~~~E~~~i~~vv~r~ALahp~I~F~l~~~g-k~~-~~~~~~~~~~~~~~ri~~i~G~~~~~~~l~i~~~-~~~~~l 237 (638)
T COG0323 161 FLKSEKTEFGHITELINRYALAHPDISFSLSHNG-KLR-IELLKLPGTGDLEERIAAVYGTEFLKNALPIENE-HEDLRL 237 (638)
T ss_pred hhcccHHHHHHHHHHHHHHHhcCCCeEEEEEECC-cee-eEEEecCCCCcHHHHHHHHhCHHHHHhhcccccC-CCceEE
Confidence 999999999999999999984 432 2566788888888899999999999999999988 888999
Q ss_pred EEEEeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhhccCC-CCcEEEEEEEcCCCceeeeccCCCCEEEeCCh
Q 041466 150 EGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSR-QYPIAIMNFIVPTRACDVNVTPDKRKVFFSDE 228 (824)
Q Consensus 150 ~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~~~~~-~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~e 228 (824)
.||++.|. +.|.++++||+|||||||+++.|.+||.++|+.++|. +||+|||+|+|||..|||||||+|+||+|+++
T Consensus 238 ~G~v~~P~--~~r~~~~~q~~fVNgR~V~~~~l~~Ai~~aY~~~L~~~r~P~~vL~l~l~p~~vDVNVHP~K~EVrf~~~ 315 (638)
T COG0323 238 SGYVSLPE--FTRASRDYQYLFVNGRPVRDKLLNHALREAYADYLPRGRYPVFVLFLELDPELVDVNVHPAKKEVRFSDE 315 (638)
T ss_pred EEEecccc--cccCCccceEEEECCCEeccHHHHHHHHHHHHhhccCCCCcEEEEEEeeChhhcccccCCCcceEEecCH
Confidence 99999996 4799999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCccccccccccCCCCCCCCCCcccccccccCCCCCCCcccchhhhhccCCCCCCcccccc
Q 041466 229 CSILHALREGLQEIYSPNNASYSVNKVEQLIEPEKSGPSSGAESCMFLEQLSPDGNGCIEILNEQQISKGNTPKTVEVDT 308 (824)
Q Consensus 229 ~~v~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (824)
+.|+++|+++|.++|.......+... . ....... ....... ..+..... ...+....
T Consensus 316 ~~i~~~I~~~I~~~L~~~~~~~~~~~-~--~~~~~~~----~~~~~~~--~~~~~~~~-----------~~~~~~~~--- 372 (638)
T COG0323 316 RLVHDLIYEAIKEALAQQGLIPPASV-E--APKSASQ----PLPAFQE--PSPLPESR-----------IQKSKVAK--- 372 (638)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcccc-c--ccccccc----ccccccc--Cccccccc-----------cccccccc---
Confidence 99999999999999976543221000 0 0000000 0000000 00000000 00000000
Q ss_pred ccccccccccccCCCCCCCCcccccCCCcchhhhhcccccccCCCCCCCCCCCCCCCcccccccccCCCCCCCccccccc
Q 041466 309 LHSDALEGLVHSSNENGKGNFTLKAHDDKSADRLSKFNCMKLIGPHNVPTEENCPSPSRVMAKNITEDGESDSRSRCIQS 388 (824)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (824)
...... . .+ ....+ .... . + . ...+
T Consensus 373 -------------------~~~~~~--~-~~-~~~~~--------~~~~-~---~--~------------------~~~~ 397 (638)
T COG0323 373 -------------------SGSSKS--D-AP-SIAEP--------ASGA-S---P--S------------------PASP 397 (638)
T ss_pred -------------------ccCCcc--c-cc-ccccc--------cccC-C---c--c------------------cccc
Confidence 000000 0 00 00000 0000 0 0 0 0000
Q ss_pred cccccccccccccccccCCCCcccccccccccccccccCCCCCcccCCCccccccchhhhhhcccccccccccccchhhh
Q 041466 389 SLNKFVTVSKRKYESIARPLTEMPLLRNQSLHCQMKKSNSDMDAVDTRSPVRRHLVDDIAKLNKIEPFKCNKADKVSKEI 468 (824)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (824)
.... .. . ... ..... .. ..
T Consensus 398 ~~~~---~~------------~-~~~----~~~~~---~~----------~~---------------------------- 416 (638)
T COG0323 398 SIRP---LS------------K-NIL----PESSP---GS----------LK---------------------------- 416 (638)
T ss_pred cccc---cc------------c-ccc----ccccc---cc----------cc----------------------------
Confidence 0000 00 0 000 00000 00 00
Q ss_pred hhccccCCCCCCCcchhhhhccccCCCCCCCCccCCCcccccccchhhhhhhcccccCCcCCCCCCCCCcccccchhhhH
Q 041466 469 ENILSSEGNTNEKPREELVTQEKATPLLNVPSIVSSSNDLKKNSEDLSVAASHLQFSGSILDAPVPSSSLDICSTLQFSI 548 (824)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (824)
....... +. ..... ..... ..
T Consensus 417 ------------------------------~~~~~~~-~~--------~~~~~--------~s~~~-~~----------- 437 (638)
T COG0323 417 ------------------------------NEDRSYD-DL--------LEEPA--------ESEDK-QE----------- 437 (638)
T ss_pred ------------------------------hhccccc-cc--------ccccc--------hhccc-cc-----------
Confidence 0000000 00 00000 00000 00
Q ss_pred HHHHHHHHHhhhhhccccccCCcchhhhhhhhhhcccCCchhHHHHHHHHHHhhHHHhhhccccCCCCcEEEEEEeCcEE
Q 041466 549 QDLRKRRQQRLSIMQSSCHTSGSVKMRRCFAAATLELSQPENEERKARALAAATTELERLFRKEDFGRMKVIGQFNLGFI 628 (824)
Q Consensus 549 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ae~~l~~~~~k~~~~~~~vigQ~~~~fI 628 (824)
. . .... .....|+.++++||++++||
T Consensus 438 -----------------~---------------~---------------~~~~-------~~~~~~~~~~~i~q~~~~yi 463 (638)
T COG0323 438 -----------------E---------------A---------------EQKA-------ISEDVFPLGEAIGQVHGTYI 463 (638)
T ss_pred -----------------c---------------c---------------cccc-------ccccccccceEEEEecceEE
Confidence 0 0 0000 00145788999999999999
Q ss_pred EEEeCCcEEEEehhhHHHHHHHHHHhcccCC--CcccccccceeecCHHHHHHHHHHHHHHHHcCeEEEecCCCCCccEE
Q 041466 629 IGKLDQDLFIVDQHAADEKYNFERLSQSTVL--NQQPLLRPLKLDLTPEEEVVASMHMDIIRKNGFSLEEDPHALAGLRF 706 (824)
Q Consensus 629 l~~~~~~L~iIDQHAAhERi~yE~l~~~~~~--~sQ~Ll~P~~l~Ls~~e~~~l~~~~~~L~~~Gf~~e~~~~~~~~~~v 706 (824)
|++.+++||||||||||||++||+|+..... ..|+||+|+.|+|++.|+..++++.+.|.++||.++.+ |++.+
T Consensus 464 l~e~~~~L~lvDqhaa~Eri~ye~l~~~~~~~~~~Q~LliP~~~~l~~~e~~~~~~~~~~l~~~G~~i~~~----g~~~~ 539 (638)
T COG0323 464 LAEHEDGLVLVDQHAAHERILYEKLKNELGNVGELQPLLIPIRLELSPEEADVLEEHKEELEKLGFEIESF----GENSV 539 (638)
T ss_pred EEEeCCCEEEEEhHHhHHHHHHHHHHHHhcccccccccccCeeeecCHHHHHHHHHHHHHHHhcCEEEEEc----CCceE
Confidence 9999999999999999999999999987554 58999999999999999999999999999999999995 46789
Q ss_pred EEEeeCCCccccCChhhHHHHHHHHHhccCCcccccccccCCCCCCChHHHHHHHHHHHhhcccccCCCCCHHHHHHHHH
Q 041466 707 RLKAVPFSKKITFGVEDVKDLISTLADNQGECSIISSYKMDTADSVCPSRVRAMLASRACRSSIMIGDALGRNEMQKILE 786 (824)
Q Consensus 707 ~l~~vP~~~~~~l~~~d~~ell~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~ACr~AIk~Gd~Ls~~Em~~Ll~ 786 (824)
.|++||.+++.......+.+++..+.+ .. .........++++++|||+|||+|+.|+.++|..|++
T Consensus 540 ~v~~vP~~l~~~~~~~~i~~l~~~~~~-~~-------------~~~~~~~~~~~~a~~aC~~svk~~~~l~~~~m~~Ll~ 605 (638)
T COG0323 540 AVRSVPAMLGKAEVQELIRELLDDLLE-GK-------------LKDLKELLEELAATMACRSAVKAGRELSAEEMNALLR 605 (638)
T ss_pred EEEecChhhcccchHHHHHHHHHHhhc-cc-------------ccchhHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHH
Confidence 999999985444333444444444443 11 1112346788999999999999999999999999999
Q ss_pred HHhccCCCCCCCCCCceeEEcc--cchhhhhh
Q 041466 787 HLADLNSPWNCPHGRPTMRHLV--DLTTIRKN 816 (824)
Q Consensus 787 ~L~~~~~P~~CPHGRPt~~~L~--~l~~~~~~ 816 (824)
+|..|++||+||||||||+++. +|+++|.+
T Consensus 606 ~~~~~~~~~~cpHGRp~~~~~~~~~l~~~F~r 637 (638)
T COG0323 606 DLEACPNPWTCPHGRPTYIVLSLAELERLFKR 637 (638)
T ss_pred HHHhCCCccCCCCCCCceEeechHHHHHhhCC
Confidence 9999999999999999999998 66677764
No 2
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=100.00 E-value=3.4e-86 Score=779.87 Aligned_cols=512 Identities=27% Similarity=0.413 Sum_probs=378.5
Q ss_pred CcccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCCceEEEEEEeCCeeeEEEEeCCCCcCccchhhhHH--------
Q 041466 11 TIRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGATSIEIALKEYGEEWFQVVDNGCGISPNNFKVRAV-------- 82 (824)
Q Consensus 11 ~I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgAt~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l~~-------- 82 (824)
+|+.||++++++|||||||+||++|||||||||||||||.|.|.|.++|..+|+|.|||+||+++|++.++.
T Consensus 2 ~I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~ 81 (617)
T PRK00095 2 PIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSKIA 81 (617)
T ss_pred CceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCC
Confidence 599999999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred --------------------------------------------------------------------------------
Q 041466 83 -------------------------------------------------------------------------------- 82 (824)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (824)
T Consensus 82 ~~~dl~~~~t~GfrGeAL~sI~~vs~l~i~s~~~~~~~~~~~~~~~G~~~~~~~~~~~~GT~V~v~~LF~n~P~Rrkflk 161 (617)
T PRK00095 82 SLDDLEAIRTLGFRGEALPSIASVSRLTLTSRTADAAEGWQIVYEGGEIVEVKPAAHPVGTTIEVRDLFFNTPARRKFLK 161 (617)
T ss_pred ChhHhhccccCCcchhHHHhhhhceEEEEEEecCCCCceEEEEecCCcCcceecccCCCCCEEEechhhccCcHHHHhcc
Confidence
Q ss_pred ----------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhccccccccceeeEeecCCceEEEEE
Q 041466 83 ----------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIYNCLEPVAICKSDSCKVEGF 152 (824)
Q Consensus 83 ----------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~~~~~l~~i~~~~~~~~~i~G~ 152 (824)
++|++|||+||+|+|+|.+++ +.+|.+++.+++.+++..+||......+++++.. .+.++|+||
T Consensus 162 ~~~~e~~~i~~~v~~~Al~~p~i~f~l~~~~-----~~~~~~~~~~~~~~~i~~i~g~~~~~~l~~~~~~-~~~~~i~g~ 235 (617)
T PRK00095 162 SEKTELGHIDDVVNRLALAHPDVAFTLTHNG-----KLVLQTRGAGQLLQRLAAILGREFAENALPIDAE-HGDLRLSGY 235 (617)
T ss_pred CcHHHHHHHHHHHHHHhhcCCCcEEEEEECC-----EEEEEeCCCCCHHHHHHHHhCHHhHhheEEEecc-CCCEEEEEE
Confidence 899999999999999999975 5678888888999999999999999999999987 778999999
Q ss_pred EeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhhccCC-CCcEEEEEEEcCCCceeeeccCCCCEEEeCChhHH
Q 041466 153 LSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSR-QYPIAIMNFIVPTRACDVNVTPDKRKVFFSDECSI 231 (824)
Q Consensus 153 is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~~~~~-~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~e~~v 231 (824)
|+.|.. +|+++++||+|||||||.++.|.++|+++|++++++ +||+|||+|+|||..|||||||+|++|+|.+|+.|
T Consensus 236 is~p~~--~~~~~~~~~~fvN~R~v~~~~l~~ai~~~y~~~~~~~~~P~~~l~i~~~~~~~DvNvhP~K~ev~f~~e~~i 313 (617)
T PRK00095 236 VGLPTL--SRANRDYQYLFVNGRYVRDKLLNHAIRQAYHDLLPRGRYPAFVLFLELDPHQVDVNVHPAKHEVRFRDERLV 313 (617)
T ss_pred EeCccc--ccCCCcceEEEECCcEecCHHHHHHHHHHHHHhccCCCCcEEEEEEEeChHhcccccCCCcCEEEeCCHHHH
Confidence 999965 688999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCccccccccccCCCCCCCCCCcccccccccCCCCCCCcccchhhhhccCCCCCCccccccccc
Q 041466 232 LHALREGLQEIYSPNNASYSVNKVEQLIEPEKSGPSSGAESCMFLEQLSPDGNGCIEILNEQQISKGNTPKTVEVDTLHS 311 (824)
Q Consensus 232 ~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (824)
+++|+++|+++|..... ..... .... ......... ....+.... . ....... ...
T Consensus 314 ~~~i~~~i~~~l~~~~~-~~~~~---~~~~-~~~~~~~~~-----~~~~~~~~~---~------~~~~~~~----~~~-- 368 (617)
T PRK00095 314 HDLIVQAIQEALAQSGL-IPAAA---GANQ-VLEPAEPEP-----LPLQQTPLY---A------SGSSPPA----SSP-- 368 (617)
T ss_pred HHHHHHHHHHHHhccCC-Ccccc---cccc-ccccccccc-----ccccccccC---c------ccccccc----ccc--
Confidence 99999999999964321 00000 0000 000000000 000000000 0 0000000 000
Q ss_pred cccccccccCCCCCCCCcccccCCCcchhhhhcccccccCCCCCCCCCCCCCCCcccccccccCCCCCCCcccccccccc
Q 041466 312 DALEGLVHSSNENGKGNFTLKAHDDKSADRLSKFNCMKLIGPHNVPTEENCPSPSRVMAKNITEDGESDSRSRCIQSSLN 391 (824)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (824)
.... . . . .. +. .. . . . . . ....+.
T Consensus 369 ~~~~--~-----~-~----~~-----~~---~~---------~----~------~-------~-~-------~~~~~~-- 392 (617)
T PRK00095 369 SSAP--P-----E-Q----SE-----ES---QE---------E----S------S-------A-E-------KNPLQP-- 392 (617)
T ss_pred cccc--c-----c-c----cc-----cc---cc---------c----c------c-------c-c-------cccccc--
Confidence 0000 0 0 0 00 00 00 0 0 0 0 0 000000
Q ss_pred ccccccccccccccCCCCcccccccccccccccccCCCCCcccCCCccccccchhhhhhcccccccccccccchhhhhhc
Q 041466 392 KFVTVSKRKYESIARPLTEMPLLRNQSLHCQMKKSNSDMDAVDTRSPVRRHLVDDIAKLNKIEPFKCNKADKVSKEIENI 471 (824)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (824)
. ..+. ... . .
T Consensus 393 ~-----------------~~~~-------~~~---~-------------~------------------------------ 402 (617)
T PRK00095 393 N-----------------ASQS-------EAA---A-------------A------------------------------ 402 (617)
T ss_pred c-----------------cccc-------ccc---c-------------c------------------------------
Confidence 0 0000 000 0 0
Q ss_pred cccCCCCCCCcchhhhhccccCCCCCCCCccCCCcccccccchhhhhhhcccccCCcCCCCCCCCCcccccchhhhHHHH
Q 041466 472 LSSEGNTNEKPREELVTQEKATPLLNVPSIVSSSNDLKKNSEDLSVAASHLQFSGSILDAPVPSSSLDICSTLQFSIQDL 551 (824)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 551 (824)
... ... .. . . ..... ..
T Consensus 403 --------------------------~~~-~~~--~~-~-------------------~--~~~~~-~~----------- 419 (617)
T PRK00095 403 --------------------------ASA-EAA--AA-A-------------------P--AAAPE-PA----------- 419 (617)
T ss_pred --------------------------ccc-ccc--cc-c-------------------c--ccccc-cc-----------
Confidence 000 000 00 0 0 00000 00
Q ss_pred HHHHHHhhhhhccccccCCcchhhhhhhhhhcccCCchhHHHHHHHHHHhhHHHhhhccccCCCCcEEEEEEeCcEEEEE
Q 041466 552 RKRRQQRLSIMQSSCHTSGSVKMRRCFAAATLELSQPENEERKARALAAATTELERLFRKEDFGRMKVIGQFNLGFIIGK 631 (824)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ae~~l~~~~~k~~~~~~~vigQ~~~~fIl~~ 631 (824)
. . . .....++.+++|||++++|||++
T Consensus 420 --------------~--------------------------------~-~-------~~~~~~~~~~vigQv~~~YIl~e 445 (617)
T PRK00095 420 --------------E--------------------------------A-A-------EEADSFPLGYALGQLHGTYILAE 445 (617)
T ss_pred --------------c--------------------------------c-c-------cccccCcCceEeEEEcCEEEEEE
Confidence 0 0 0 00123456789999999999999
Q ss_pred eCCcEEEEehhhHHHHHHHHHHhccc---CCCcccccccceeecCHHHHHHHHHHHHHHHHcCeEEEecCCCCCccEEEE
Q 041466 632 LDQDLFIVDQHAADEKYNFERLSQST---VLNQQPLLRPLKLDLTPEEEVVASMHMDIIRKNGFSLEEDPHALAGLRFRL 708 (824)
Q Consensus 632 ~~~~L~iIDQHAAhERi~yE~l~~~~---~~~sQ~Ll~P~~l~Ls~~e~~~l~~~~~~L~~~Gf~~e~~~~~~~~~~v~l 708 (824)
.+++|||||||||||||+||+|++.. .+.+|+||+|+.|+|++.+..+++++.+.|++|||+++.| |++++.|
T Consensus 446 ~~~~L~iIDQHAAhERI~yE~l~~~~~~~~~~~Q~LL~P~~l~Ls~~e~~~l~~~~~~L~~lGf~~e~f----g~~si~I 521 (617)
T PRK00095 446 NEDGLYLVDQHAAHERLLYEQLKDKLAEVGLASQPLLIPLVLELSEDEADRLEEHKELLARLGLELEPF----GPNSFAV 521 (617)
T ss_pred eCCcEEEEEHHHHHHHHHHHHHHHHhccCCCcccccccCeEEeeCHHHHHHHHHHHHHHHhCCcEEEEc----CCCEEEE
Confidence 99999999999999999999999863 4778999999999999999999999999999999999995 5789999
Q ss_pred EeeCCCccccCChhhHHHHHHHHHhccCCcccccccccCCCCCCChHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHH
Q 041466 709 KAVPFSKKITFGVEDVKDLISTLADNQGECSIISSYKMDTADSVCPSRVRAMLASRACRSSIMIGDALGRNEMQKILEHL 788 (824)
Q Consensus 709 ~~vP~~~~~~l~~~d~~ell~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~ACr~AIk~Gd~Ls~~Em~~Ll~~L 788 (824)
++||.+ ++..+..++|.++++.+.. .....+..++++++++|||+|||+|+.|+.+||++||++|
T Consensus 522 ~~vP~~----l~~~~~~~~l~ell~~l~~-----------~~~~~~~~~~~~las~ACr~AIk~g~~Ls~~E~~~Ll~~L 586 (617)
T PRK00095 522 REVPAL----LGQQELEELIRDLLDELAE-----------EGDSDTLKERELLATMACHGAIRAGRRLTLEEMNALLRQL 586 (617)
T ss_pred EecChh----hcccCHHHHHHHHHHHHHh-----------cCCcchHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHH
Confidence 999997 4445555666665554321 0111222233789999999999999999999999999999
Q ss_pred hccCCCCCCCCCCceeEEcc--cchhhhhhc
Q 041466 789 ADLNSPWNCPHGRPTMRHLV--DLTTIRKNI 817 (824)
Q Consensus 789 ~~~~~P~~CPHGRPt~~~L~--~l~~~~~~~ 817 (824)
+.|++||+||||||||++|+ +|+++|+|+
T Consensus 587 ~~~~~P~~CPHGRPt~i~l~~~elek~F~R~ 617 (617)
T PRK00095 587 EATENPGTCPHGRPTYIELSLSDLEKLFKRI 617 (617)
T ss_pred HhcccccCCCCCCeeEEECCHHHHHHHhCcC
Confidence 99999999999999999998 788888764
No 3
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=100.00 E-value=2.6e-84 Score=729.65 Aligned_cols=569 Identities=42% Similarity=0.641 Sum_probs=402.8
Q ss_pred cccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCCceEEEEEEeCCeeeEEEEeCCCCcCccchhhhHH---------
Q 041466 12 IRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGATSIEIALKEYGEEWFQVVDNGCGISPNNFKVRAV--------- 82 (824)
Q Consensus 12 I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgAt~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l~~--------- 82 (824)
|++||++++++|+|||||.++++|||||||||||||||.|+|.++++|.++|+|+||||||++.|++.+|+
T Consensus 1 Ik~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~ 80 (672)
T KOG1978|consen 1 IKQIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKHTTSKIVS 80 (672)
T ss_pred CCCCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecCCCCcceEEEecCCCCCCccchhhhhhhhhhhcccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q 041466 83 -------------------------------------------------------------------------------- 82 (824)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (824)
T Consensus 81 f~Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~~k~~~ar~~GTTV~v~~LF~tLPVR~kef~ 160 (672)
T KOG1978|consen 81 FADLAVLFTLGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYDHDGHIIQKKPVARGRGTTVMVRQLFSTLPVRRKEFQ 160 (672)
T ss_pred hhhhhhhhhhhhHHHHHHhhhhccceEEEEeeccCccceeEEEccCCceeeeccccCCCCCEEEHhhhcccCCCchHHhh
Confidence
Q ss_pred -----------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhccccccccceeeEeecCCceEEEE
Q 041466 83 -----------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIYNCLEPVAICKSDSCKVEG 151 (824)
Q Consensus 83 -----------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~~~~~l~~i~~~~~~~~~i~G 151 (824)
.+++.||+++++|+|.++|..+.+++.+++++.|.++++++|.++||...+..|.++. .
T Consensus 161 r~~Kref~k~i~li~~y~li~~~ir~~~~n~t~~~~k~iil~t~~~~~~k~~i~svfg~~~~~~l~p~~-~--------- 230 (672)
T KOG1978|consen 161 RNIKRKFVKLISLIQAYALISTAIKFLVSNSTLAGKKNIILKTGGYGSDKINISSNFGSVEEENLEPLI-F--------- 230 (672)
T ss_pred cchhhhhhhHHhhHHHHHhhcccceeeeeeccccCCceeEEecCCcchHHHHHHhhhhhhhhhcccccc-c---------
Confidence 8999999999999999999988888899999999999999999999999998888775 1
Q ss_pred EEeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhhccCCCCcEEEEEEEcCCCceeeeccCCCCEEEeCChhHH
Q 041466 152 FLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSRQYPIAIMNFIVPTRACDVNVTPDKRKVFFSDECSI 231 (824)
Q Consensus 152 ~is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~~~~~~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~e~~v 231 (824)
|+.+.+|+||++.++||+|||+|||..+.|.++|+++|+.|+.++| |||.||++.+||||+|||+.|+|++|..|
T Consensus 231 -is~~~~g~~r~s~drqf~fIn~Rpv~~~~i~~~inevy~~~~~~q~----l~i~V~~~~iDvNvtPDK~~vll~~e~~v 305 (672)
T KOG1978|consen 231 -ISSCHHGCGRSSEDRQFIFINRRPVFPSDICRVINEVYKLYNERQY----LFLDVPEGCIDVNVTPDKRQVLLSNERSV 305 (672)
T ss_pred -cccccccccccCccceeeeecCccCCHHHHHHHHHHHhhhhccccc----eeeeccccceeeeeCCCcceeeccchHHH
Confidence 8889999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC-Ccccccccc-ccCCCCCCCCCCcccccccccCCCCCCCcccchhhhhccCCCCCCccccccc
Q 041466 232 LHALREGLQEIYSPNNA-SYSVNKVEQ-LIEPEKSGPSSGAESCMFLEQLSPDGNGCIEILNEQQISKGNTPKTVEVDTL 309 (824)
Q Consensus 232 ~~~i~~~l~~~l~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (824)
+..|+..+..+|..... .+. ..++ +.. ...+.... +... ...... . .
T Consensus 306 l~~l~~~l~~~~~s~~~~~~~--~~s~~p~k---~~~s~~~~----s~~~--------------------~~~~~~-~-~ 354 (672)
T KOG1978|consen 306 LFSLRNSLVDFYNSNCDLNFS--DVSMLPVQ---NPSSLTER----SDPI--------------------ENKLVS-R-T 354 (672)
T ss_pred HHHHHHHHHHHHhhccccccc--cccccCcc---CCCccccc----cccc--------------------hhhhcc-c-c
Confidence 99999999999963211 000 0000 000 00000000 0000 000000 0 0
Q ss_pred cccccccccccCCCCCCCCcccccCCCcchhhhhcccccccCCCCCCCCCCCCCCCcccccccccCCCCCCCcccccccc
Q 041466 310 HSDALEGLVHSSNENGKGNFTLKAHDDKSADRLSKFNCMKLIGPHNVPTEENCPSPSRVMAKNITEDGESDSRSRCIQSS 389 (824)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (824)
.+... ..+. .....+..+ . +..+.+ . .....+.
T Consensus 355 --~~~~~--------~~~~--i~~~~P~~~----~---------~~~~~~--------------~--------~~~~~pd 387 (672)
T KOG1978|consen 355 --DSMIG--------IKTN--ISEDHPNEE----S---------NFLTPE--------------F--------LKITTPD 387 (672)
T ss_pred --hhhhc--------cccc--cccCCCccc----c---------cccCcc--------------c--------ccccCCc
Confidence 00000 0000 000000000 0 000000 0 0000000
Q ss_pred ccccccccccccccccCCCCcccccccccccccccccCCCCCcccCCCccccccchhhhhhcccccccccccccchhhhh
Q 041466 390 LNKFVTVSKRKYESIARPLTEMPLLRNQSLHCQMKKSNSDMDAVDTRSPVRRHLVDDIAKLNKIEPFKCNKADKVSKEIE 469 (824)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (824)
........+ .++..+... .+. ...... +....-++....
T Consensus 388 ~~~~~~s~~--------d~~~~~~~~-----~~~-------------~~~~~~--~~~~~~ed~~~~------------- 426 (672)
T KOG1978|consen 388 KEKECSSKK--------DLTAIPLEK-----NPS-------------LKKPDL--EDTENLEDETNV------------- 426 (672)
T ss_pred ccccccCCC--------Ccccccccc-----Ccc-------------ccccch--hhhhhccccccc-------------
Confidence 000000000 000000000 000 000000 000000000000
Q ss_pred hccccCCCCCCCcchhhhhccccCCCCCCCCccCCCcccccccchhhhhhhcccccCCcCCCCCCCCCcccccchhhhHH
Q 041466 470 NILSSEGNTNEKPREELVTQEKATPLLNVPSIVSSSNDLKKNSEDLSVAASHLQFSGSILDAPVPSSSLDICSTLQFSIQ 549 (824)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (824)
.+ .+ ... .+....+ .+... ..... . ....+.
T Consensus 427 --~t---~s-------------------~~~-~se~~~~---------se~~~----------~~~~~--~-~~~~~~-- 457 (672)
T KOG1978|consen 427 --ET---PS-------------------SSP-LSEDKSL---------SEQEK----------LKIEV--Y-SKIKFA-- 457 (672)
T ss_pred --cC---CC-------------------ccc-chhhccc---------cccch----------hhhcc--c-cchhhh--
Confidence 00 00 000 0000000 00000 00000 0 000000
Q ss_pred HHHHHHHHhhhhhccccccCCcchhhhhhhhhhcccCCchhHHHHHHHHHHhhHHHhhhccccCCCCcEEEEEEeCcEEE
Q 041466 550 DLRKRRQQRLSIMQSSCHTSGSVKMRRCFAAATLELSQPENEERKARALAAATTELERLFRKEDFGRMKVIGQFNLGFII 629 (824)
Q Consensus 550 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ae~~l~~~~~k~~~~~~~vigQ~~~~fIl 629 (824)
. .... ... .......++..+...+.|++|..|++|||||.+||+
T Consensus 458 ~------------~~~~---------------------~~~---~~~~N~~~e~~~s~~v~k~df~~meiigqfNlgFIi 501 (672)
T KOG1978|consen 458 R------------KASE---------------------TKI---NPGHNDSVELEESREVAKADFSRMEIIGQFNLGFII 501 (672)
T ss_pred c------------ccch---------------------hhc---Ccccchhhhchhhhcccccchhhcceeeecccccee
Confidence 0 0000 000 000011144455666789999999999999999999
Q ss_pred EEeCCcEEEEehhhHHHHHHHHHHhcccCCCcccccccceeecCHHHHHHHHHHHHHHHHcCeEEEecCCCCCccEEEEE
Q 041466 630 GKLDQDLFIVDQHAADEKYNFERLSQSTVLNQQPLLRPLKLDLTPEEEVVASMHMDIIRKNGFSLEEDPHALAGLRFRLK 709 (824)
Q Consensus 630 ~~~~~~L~iIDQHAAhERi~yE~l~~~~~~~sQ~Ll~P~~l~Ls~~e~~~l~~~~~~L~~~Gf~~e~~~~~~~~~~v~l~ 709 (824)
+.++.+||||||||+||++|||+|++.+.+..|+|+.|+.|+|++.++..+.+++++|+++||.|+++.++..+.++++.
T Consensus 502 ~~l~~dlfIvdqha~dEk~Nfe~l~~~~~L~~Q~l~~P~~l~ls~~nE~vl~d~l~~f~knGF~~~~~~n~~~~~~~~l~ 581 (672)
T KOG1978|consen 502 VKLEKDLFIVDQHASDEKRNFERLQSTTVLKAQPLICPQALDLSAINEMVLLDNLPLFEKNGFKVKIDENAPDGKRVRLL 581 (672)
T ss_pred eeccCceEEeccchhhhhhhHHHHHHhcccccccccCccccccCcccceeehhhhHHHHhcCceEeecCCCcccceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877778999999
Q ss_pred eeCCCccccCChhhHHHHHHHHHhccCCcccccccccCCCCCCChHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHh
Q 041466 710 AVPFSKKITFGVEDVKDLISTLADNQGECSIISSYKMDTADSVCPSRVRAMLASRACRSSIMIGDALGRNEMQKILEHLA 789 (824)
Q Consensus 710 ~vP~~~~~~l~~~d~~ell~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~ACr~AIk~Gd~Ls~~Em~~Ll~~L~ 789 (824)
++|..+...|+..|+.++|..|.+... ...+|.+++.|||++|||++||+|++|+..+|.+++++|+
T Consensus 582 ~~p~skn~~fg~~dl~Eli~~l~~~~~-------------~~~rp~~vr~m~as~AcR~Svmig~~L~~~dm~~iv~~L~ 648 (672)
T KOG1978|consen 582 SVPVSKNQTFGVSDLKELISVLKNFPE-------------ETYRPSKVRSMIASKACRSSVMIGDPLSKDDMTRIVRSLA 648 (672)
T ss_pred ccccccccccCHHHHHHHHHHHhhCCC-------------cEeehHHHHHHHHHHHhhhhhhcccccCHHHHHHHHHHHH
Confidence 999999999999999999999998743 2234999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCceeEEcccchh
Q 041466 790 DLNSPWNCPHGRPTMRHLVDLTT 812 (824)
Q Consensus 790 ~~~~P~~CPHGRPt~~~L~~l~~ 812 (824)
++++||+||||||||+||++|..
T Consensus 649 ~l~~pwnCpHGRPTmrhL~~l~~ 671 (672)
T KOG1978|consen 649 ELEHPWNCPHGRPTMRHLCELTD 671 (672)
T ss_pred HhcCCCCCCCCchhHHHHhhccC
Confidence 99999999999999999998864
No 4
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=100.00 E-value=6.8e-48 Score=423.80 Aligned_cols=234 Identities=29% Similarity=0.469 Sum_probs=211.2
Q ss_pred CCCcccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCCceEEEEEEeCCeeeEEEEeCCCCcCccchhhhHH------
Q 041466 9 SPTIRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGATSIEIALKEYGEEWFQVVDNGCGISPNNFKVRAV------ 82 (824)
Q Consensus 9 ~~~I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgAt~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l~~------ 82 (824)
++.||+||++|||||||||||.||++++|||||||||||||.|.|.+++||+++++|+|||+||.++||+.||.
T Consensus 5 ~~~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 5 PRKIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred chhhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q 041466 83 -------------------------------------------------------------------------------- 82 (824)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (824)
T Consensus 85 L~kFEDL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~~~pKpcAgk~GT~I~vedLFYN~~~Rrk 164 (694)
T KOG1979|consen 85 LTKFEDLFSLSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMIATPKPCAGKQGTIITVEDLFYNMPTRRK 164 (694)
T ss_pred cchhHHHHhhhhcCccHHHHhhhhheeEEEEEEeecCceeeeEEEeeccccccCCCCccCCCceEEEehHhhccCHHHHH
Confidence
Q ss_pred -------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhccccccccce-eeEeecCC--c
Q 041466 83 -------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIYNCLE-PVAICKSD--S 146 (824)
Q Consensus 83 -------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~~~~~l~-~i~~~~~~--~ 146 (824)
++|.+||+.+|+|+|+|+..+ .. ..-+.+++..+..++|+.|||..++.+|+ ++.-..+. .
T Consensus 165 al~~~~EE~~ki~dlv~ryAIHn~~VsFs~rk~G-d~--~~dl~t~~~~s~~D~ir~i~g~~Va~~ll~els~~~~~~l~ 241 (694)
T KOG1979|consen 165 ALRNHAEEYRKIMDLVGRYAIHNPRVSFSLRKQG-DT--VADLRTSVSCSREDNIRNIYGVSVAKNLLNELSKCDSKLLK 241 (694)
T ss_pred HhcCcHHHHHHHHHHHHHHheeCCCcceEEeecc-cc--ccccccCCccccccchhhhhhhHHHHHHHHHhhhccCceeE
Confidence 999999999999999999864 22 34578888899999999999999999999 66522022 3
Q ss_pred eEEEEEEeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhhccCC-CCcEEEEEEEcCCCceeeeccCCCCEEEe
Q 041466 147 CKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSR-QYPIAIMNFIVPTRACDVNVTPDKRKVFF 225 (824)
Q Consensus 147 ~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~~~~~-~~P~~~L~i~~~p~~vDVNVhP~K~eV~f 225 (824)
+...|||+.+.+. ..+....+|||||.|.+..|.++|.++|..++|+ .+||++|.|.+||..|||||||+|+||.|
T Consensus 242 f~~~g~Isn~n~~---akk~i~vlFIN~RLVes~~Lr~ale~VYa~yLpk~~~pFvYLsL~i~p~~vDVNVHPTK~eV~F 318 (694)
T KOG1979|consen 242 FSAEGYISNANYS---AKKSILVLFINGRLVESDELRHALEEVYAAYLPKGHHPFVYLSLNIDPENVDVNVHPTKREVHF 318 (694)
T ss_pred EeccceEechhhh---hhhheEEEEEcCcEeehHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHcccccCCCcceeEe
Confidence 6788999999863 2233446899999999999999999999999999 99999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhcCCCC
Q 041466 226 SDECSILHALREGLQEIYSPNNA 248 (824)
Q Consensus 226 ~~e~~v~~~i~~~l~~~l~~~~~ 248 (824)
.+++.|++.|++.+...|...+.
T Consensus 319 L~qEeIie~I~~~ie~~L~~~d~ 341 (694)
T KOG1979|consen 319 LNQEEIIERICQQIEERLSALDT 341 (694)
T ss_pred ecHHHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999976543
No 5
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.6e-42 Score=376.62 Aligned_cols=209 Identities=39% Similarity=0.619 Sum_probs=188.9
Q ss_pred CcccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCCceEEEEEEeCCeeeEEEEeCCCCcCccchhhhHH--------
Q 041466 11 TIRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGATSIEIALKEYGEEWFQVVDNGCGISPNNFKVRAV-------- 82 (824)
Q Consensus 11 ~I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgAt~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l~~-------- 82 (824)
+|++||++++++|+|||||.+|.+||+|||+|||||||+.|.|.+..+|...|.|.|||.||++++++.++.
T Consensus 2 ~I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~ 81 (312)
T TIGR00585 2 TIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATSKIQ 81 (312)
T ss_pred cCeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCC
Confidence 599999999999999999999999999999999999999999999999988899999999999999987776
Q ss_pred --------------------------------------------------------------------------------
Q 041466 83 -------------------------------------------------------------------------------- 82 (824)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (824)
T Consensus 82 ~~~~~~~~~~~G~rG~al~si~~~s~~~i~S~~~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~~lf~n~p~r~~~~ 161 (312)
T TIGR00585 82 SFEDLERIETLGFRGEALASISSVSRLTITTKTSAADGLAWQALLEGGMIEEIKPAPRPVGTTVEVRDLFYNLPVRRKFL 161 (312)
T ss_pred ChhHhhcccccCccchHHHHHHhhCcEEEEEeecCCCcceEEEEECCCcCcccccccCCCccEEEEchhhccCchhhhhc
Confidence
Q ss_pred -----------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHH-hHhhhccccccccceeeEeecCCceEEE
Q 041466 83 -----------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKD-NIITVFGMNIYNCLEPVAICKSDSCKVE 150 (824)
Q Consensus 83 -----------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~-~i~~v~G~~~~~~l~~i~~~~~~~~~i~ 150 (824)
++|++|||+||+|+|.|.+++ + ..+.+.+.+..++++ ++.+|||.....+|+++.....+.+++.
T Consensus 162 ~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~~-~--~~~~~~~~~~~~~~~~~i~~v~G~~~~~~l~~~~~~~~~~~~v~ 238 (312)
T TIGR00585 162 KSPKKEFRKILDLLNRYALIHPDVSFSLTHDG-K--KVLQLSTKPNQSLKERRIRSVFGTAVLSKLFPLLEWEDGDLQLE 238 (312)
T ss_pred cCcHHHHHHHHHHHHHHhhcCCCeEEEEEECC-E--EEEEEcCCCCCCHHHHHHHHHhChHhHhhceeeecccCCCEEEE
Confidence 889999999999999999974 2 233344445678999 5999999999999999984326779999
Q ss_pred EEEeCCCCCCCCCCCCc-eEEEEcCcccCChHHHHHHHHHhhhccCC-CCcEEEEEEEcCCCceeeeccCCCCEEE
Q 041466 151 GFLSKPGQGSGRNLGDR-QYFFVNDRPVDLPKVSKLVNELYKGANSR-QYPIAIMNFIVPTRACDVNVTPDKRKVF 224 (824)
Q Consensus 151 G~is~p~~~~~r~~~~~-q~~fvN~R~v~~~~l~~ai~~~y~~~~~~-~~P~~~L~i~~~p~~vDVNVhP~K~eV~ 224 (824)
|||+.|..+ +..+.. ||+|||||||..+.|.++|+++|+.+++. +||+|||+|+|||..|||||||+|++|+
T Consensus 239 G~is~p~~~--~~~~~~~q~ifvNgR~v~~~~l~k~I~~~y~~~~~~~~~P~~vL~i~~p~~~iDvNv~P~K~eV~ 312 (312)
T TIGR00585 239 GFISEPNVT--RSRRSGWQFLFINGRPVELKLLLKAIREVYHEYLPKGQYPVFVLNLEIDPELVDVNVHPDKKEVR 312 (312)
T ss_pred EEEcCcccc--cCCCCcceEEEECCcEecchHHHHHHHHHHHHhccCCCCcEEEEEEEEChHHcccCCCCCchhhC
Confidence 999999864 555556 99999999999999999999999999987 9999999999999999999999999985
No 6
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=100.00 E-value=9e-40 Score=363.31 Aligned_cols=205 Identities=25% Similarity=0.346 Sum_probs=168.9
Q ss_pred hHHHhhhccccCCCCcEEEEEEeCcEEEEEeCCcEEEEehhhHHHHHHHHHHhcccCCCcccccccceeecCHHHHHHHH
Q 041466 602 TTELERLFRKEDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLSQSTVLNQQPLLRPLKLDLTPEEEVVAS 681 (824)
Q Consensus 602 e~~l~~~~~k~~~~~~~vigQ~~~~fIl~~~~~~L~iIDQHAAhERi~yE~l~~~~~~~sQ~Ll~P~~l~Ls~~e~~~l~ 681 (824)
+...+..++|..+..|+|+-|++++||-+-.-...-++||||++||+..|.+... .+.+-.|+.|+.|...|.+..+|.
T Consensus 898 ~sl~p~~~nk~~i~~~qvlqqvDkkyi~~v~~~~~~~~~qha~dek~~~q~~~~k-~l~~s~li~~l~~kvlpm~~~ll~ 976 (1142)
T KOG1977|consen 898 VSLYPYRFNKGMIHSMQVLQQVDKKYIACVMSTKTEENGQHASDEKQQAQGSGRK-KLLSSTLIPPLEIKVLPMQRRLLW 976 (1142)
T ss_pred hhhchhhhcccchhhHHHHHhhchhheeeeeeccccccccchhHHHHHhhhhccc-cccccccccceeEEechhhHHHHH
Confidence 3456778899999999999999999999999888999999999999999998765 467788999999999999999999
Q ss_pred HHHHHHHHcCeEEEecCCCCCccEEEEEeeCCCcccc----------C-ChhhHHHHHHHHHhccCCcccccccccCCCC
Q 041466 682 MHMDIIRKNGFSLEEDPHALAGLRFRLKAVPFSKKIT----------F-GVEDVKDLISTLADNQGECSIISSYKMDTAD 750 (824)
Q Consensus 682 ~~~~~L~~~Gf~~e~~~~~~~~~~v~l~~vP~~~~~~----------l-~~~d~~ell~~l~~~~~~~~~~~~~~~~~~~ 750 (824)
.|.+.++.|||++.+.. .+...+.+.-+|..+... + ...-.++||..+++.... .|
T Consensus 977 ~Y~~~~~d~gw~~~~~~--~~~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~i~~~~el~~t-----------~g 1043 (1142)
T KOG1977|consen 977 CYHKNLEDLGWEFVFPD--TSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLELLQT-----------TG 1043 (1142)
T ss_pred HHHHHhhhhceEEeccc--ccccceeccccceecccccchhhccccccccchhHHHHHHHHHHHhcc-----------CC
Confidence 99999999999998753 234556666666543211 1 112345666665554332 23
Q ss_pred CC-ChHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhccCCCCCCCCCCceeEEcccchhhhhhcccc
Q 041466 751 SV-CPSRVRAMLASRACRSSIMIGDALGRNEMQKILEHLADLNSPWNCPHGRPTMRHLVDLTTIRKNIDEN 820 (824)
Q Consensus 751 ~~-~~~~~~~~las~ACr~AIk~Gd~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~~~L~~l~~~~~~~~~~ 820 (824)
+. .|..+.++|+++|||+||||||.|++.||..||..|..|..||+|+||||+|++|.+|.+|.+.|+-+
T Consensus 1044 sstlP~tv~kVLnSkACrgAImFgD~L~~qEc~~lI~~Ls~c~lpFqCAHGRPsmvPladlk~l~kqi~~~ 1114 (1142)
T KOG1977|consen 1044 SSTLPLTVQKVLNSKACRGAIMFGDGLSLQECCRLIEALSSCQLPFQCAHGRPSMVPLADLKHLEKQIKPN 1114 (1142)
T ss_pred CCccCHHHHHHHhhhhhhhceeeCCccCHHHHHHHHHHHHhcCCchhhccCCCCccchhhHHHHHHHhhhh
Confidence 33 48889999999999999999999999999999999999999999999999999999999999877654
No 7
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.
Probab=99.97 E-value=2.4e-31 Score=259.13 Aligned_cols=141 Identities=33% Similarity=0.576 Sum_probs=115.9
Q ss_pred CcEEEEEEeCcEEEEEeCCcEEEEehhhHHHHHHHHHHhcccC--CCcccccccceeecCHHHHHHHHHHHHHHHHcCeE
Q 041466 616 RMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLSQSTV--LNQQPLLRPLKLDLTPEEEVVASMHMDIIRKNGFS 693 (824)
Q Consensus 616 ~~~vigQ~~~~fIl~~~~~~L~iIDQHAAhERi~yE~l~~~~~--~~sQ~Ll~P~~l~Ls~~e~~~l~~~~~~L~~~Gf~ 693 (824)
.+++|||++++|||++.+++|||||||||||||+||+|++... ..+|+|+.|+.++|++.+..+++++.+.|++|||+
T Consensus 2 ~~~vlgq~~~~yil~~~~~~L~liDqHAAhERi~~E~l~~~~~~~~~~q~Ll~P~~~~ls~~e~~~l~~~~~~L~~~Gf~ 81 (144)
T PF08676_consen 2 LLKVLGQLDNKYILAESEDGLYLIDQHAAHERILYEKLLKQLEEGEQSQPLLFPIELELSPQEAELLEENKEELEKLGFE 81 (144)
T ss_dssp T-EEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHCCHCS-EEEEEEEEEEE--HHHHHHHHHHHHHHHHTT-E
T ss_pred ceeeHhHhCCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHhhccCCCceecCCCccCCCCHHHHHHHHHHHHHHHhCCeE
Confidence 5899999999999999999999999999999999999998753 28999999999999999999999999999999999
Q ss_pred EEecCCCCCccEEEEEeeCCCccccCChhhHHHHHHHHHhccCCcccccccccCCCCCCChHHHHHHHHHHHhhcccccC
Q 041466 694 LEEDPHALAGLRFRLKAVPFSKKITFGVEDVKDLISTLADNQGECSIISSYKMDTADSVCPSRVRAMLASRACRSSIMIG 773 (824)
Q Consensus 694 ~e~~~~~~~~~~v~l~~vP~~~~~~l~~~d~~ell~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~ACr~AIk~G 773 (824)
++.+ |++++.|++||.+ +...++.+++.++++.... .... +..+.++++++|||+|||+|
T Consensus 82 ~~~~----~~~~~~v~~vP~~----l~~~~~~~~l~~ll~~l~~-----------~~~~-~~~~~~~~~~~AC~~Aik~g 141 (144)
T PF08676_consen 82 IEEF----GENSIIVRSVPAI----LREQDLEELLRELLEELQE-----------KEES-PEIIEELLASMACRSAIKAG 141 (144)
T ss_dssp EEEE----STTEEEEEEEECC----CTTSSHHHHHHHHHHHHCT-----------CSS--CCCHHHHHHHHHTTSSSSSS
T ss_pred EEEe----cCCEEEEEEeCcc----cccccHHHHHHHHHHHHHh-----------CCCc-HHHHHHHHHHHHHHHhhcCC
Confidence 9984 4789999999998 5666777777777766442 1111 45678899999999999999
Q ss_pred CCC
Q 041466 774 DAL 776 (824)
Q Consensus 774 d~L 776 (824)
|+|
T Consensus 142 ~~L 144 (144)
T PF08676_consen 142 DKL 144 (144)
T ss_dssp ---
T ss_pred CCC
Confidence 987
No 8
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=99.97 E-value=1e-30 Score=249.04 Aligned_cols=121 Identities=27% Similarity=0.443 Sum_probs=114.6
Q ss_pred CHHHhHhhhccccccccceeeEeecC----CceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhhcc
Q 041466 119 SLKDNIITVFGMNIYNCLEPVAICKS----DSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGAN 194 (824)
Q Consensus 119 ~~~~~i~~v~G~~~~~~l~~i~~~~~----~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~~~ 194 (824)
+++++|.+|||.+.+.+|++++.. . +.++|+||+++|.. + ..+++||+|||||||+++.|.+||+++|++++
T Consensus 1 ~~~~~i~~v~G~~~~~~li~i~~~-~~~~~~~~~i~G~is~p~~--~-~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~l 76 (127)
T cd03483 1 STKDNIRSVYGAAVANELIEVEIS-DDDDDLGFKVKGLISNANY--S-KKKIIFILFINNRLVECSALRRAIENVYANYL 76 (127)
T ss_pred CHHHHHHHHhCHHHHhcceEEecc-cCCcCCcEEEEEEEcCchh--c-CCCceEEEEEcCCEecCHHHHHHHHHHHHHhC
Confidence 478999999999999999999977 4 57999999999987 3 56789999999999999999999999999999
Q ss_pred CC-CCcEEEEEEEcCCCceeeeccCCCCEEEeCChhHHHHHHHHHHHHHh
Q 041466 195 SR-QYPIAIMNFIVPTRACDVNVTPDKRKVFFSDECSILHALREGLQEIY 243 (824)
Q Consensus 195 ~~-~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~e~~v~~~i~~~l~~~l 243 (824)
++ +||+++|+|+|||+.|||||||+|+||+|++|+.|+++|+++|+++|
T Consensus 77 ~~~~~P~~~L~i~i~p~~vDVNVHP~K~eV~f~~e~~i~~~i~~~v~~~L 126 (127)
T cd03483 77 PKGAHPFVYLSLEIPPENVDVNVHPTKREVHFLNEEEIIERIQKLVEDKL 126 (127)
T ss_pred cCCCccEEEEEEEeChHHeeeccCCCccEEEecCHHHHHHHHHHHHHHHh
Confidence 98 99999999999999999999999999999999999999999999987
No 9
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=99.96 E-value=8.2e-30 Score=244.64 Aligned_cols=124 Identities=31% Similarity=0.610 Sum_probs=117.5
Q ss_pred CHHHhHhhhccccccccceeeEeecC--CceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCC-hHHHHHHHHHhhhcc-
Q 041466 119 SLKDNIITVFGMNIYNCLEPVAICKS--DSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDL-PKVSKLVNELYKGAN- 194 (824)
Q Consensus 119 ~~~~~i~~v~G~~~~~~l~~i~~~~~--~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~-~~l~~ai~~~y~~~~- 194 (824)
+++++|.+|||...+.+|++++.. . +.++++|||++|..+.+|.++++||+|||||||.+ +.|.++|+++|++++
T Consensus 1 ~l~~~i~~v~G~~~~~~li~i~~~-~~~~~~~i~G~is~p~~~~~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~~~~ 79 (132)
T cd03485 1 DHKEALARVLGTAVAANMVPVQST-DEDPQISLEGFLPKPGSDVSKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSSAYR 79 (132)
T ss_pred CHHHHHHHHhCHHHHhccEEEecc-CCCCcEEEEEEECCCCcCCCcccCCcEEEEECCeecccchHHHHHHHHHHHHHhc
Confidence 478999999999999999999987 5 67999999999966567999999999999999999 999999999999999
Q ss_pred --CC-CCcEEEEEEEcCCCceeeeccCCCCEEEeCChhHHHHHHHHHHHHHh
Q 041466 195 --SR-QYPIAIMNFIVPTRACDVNVTPDKRKVFFSDECSILHALREGLQEIY 243 (824)
Q Consensus 195 --~~-~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~e~~v~~~i~~~l~~~l 243 (824)
+. +||+++|+|+|||+.|||||||+|+||+|.+|+.|+++|+++|+.+|
T Consensus 80 ~~~~~~~P~~~L~i~~~~~~vDVNVhP~K~eV~f~~e~~v~~~i~~~v~~~~ 131 (132)
T cd03485 80 KSSLRRYPVFFLNILCPPGLVDVNIEPDKDDVLLQNKEAVLQAVENLLESLY 131 (132)
T ss_pred cccccCCCEEEEEEEcCCCceeeccCCccCEEEEcChHHHHHHHHHHHHHHc
Confidence 77 99999999999999999999999999999999999999999999987
No 10
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=99.96 E-value=2.2e-29 Score=238.60 Aligned_cols=120 Identities=21% Similarity=0.337 Sum_probs=115.0
Q ss_pred HHhHhhhccccccccceeeEeecCCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhhccCC-CCc
Q 041466 121 KDNIITVFGMNIYNCLEPVAICKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSR-QYP 199 (824)
Q Consensus 121 ~~~i~~v~G~~~~~~l~~i~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~~~~~-~~P 199 (824)
.++|..+||...+..|++++.. .+.++|+||||+|.. +|+++++||+|||||||.++.|.+||+++|+++++. +||
T Consensus 2 ~~ri~~v~G~~~~~~li~i~~~-~~~~~i~G~is~p~~--~r~~~~~q~ifVN~R~V~~~~l~~ai~~~y~~~~~~~~~P 78 (123)
T cd03482 2 LQRLADILGEDFAEQALAIDEE-AGGLRLSGWIALPTF--ARSQADIQYFYVNGRMVRDKLISHAVRQAYSDVLHGGRHP 78 (123)
T ss_pred HhHHHHHhCHHHHhccceEecc-CCCEEEEEEEeCchh--ccCCCCcEEEEEcCcEECChHHHHHHHHHHHHhccCCCCc
Confidence 4789999999999999999977 777999999999986 599999999999999999999999999999999998 999
Q ss_pred EEEEEEEcCCCceeeeccCCCCEEEeCChhHHHHHHHHHHHHHh
Q 041466 200 IAIMNFIVPTRACDVNVTPDKRKVFFSDECSILHALREGLQEIY 243 (824)
Q Consensus 200 ~~~L~i~~~p~~vDVNVhP~K~eV~f~~e~~v~~~i~~~l~~~l 243 (824)
++||+|+|||..|||||||+|+||+|++|+.|+++|.++|+++|
T Consensus 79 ~~vL~l~ipp~~vDvNVhP~K~eV~f~~e~~i~~~i~~~i~~~L 122 (123)
T cd03482 79 AYVLYLELDPAQVDVNVHPAKHEVRFRDSRLVHDFIYHAVKKAL 122 (123)
T ss_pred EEEEEEEcChHheeeccCCCccEEEECCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987
No 11
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=99.96 E-value=3.1e-29 Score=236.45 Aligned_cols=117 Identities=37% Similarity=0.635 Sum_probs=106.6
Q ss_pred HhhhccccccccceeeEeecCCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhhccCC-CCcEEE
Q 041466 124 IITVFGMNIYNCLEPVAICKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSR-QYPIAI 202 (824)
Q Consensus 124 i~~v~G~~~~~~l~~i~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~~~~~-~~P~~~ 202 (824)
|.+|||.++++.|++++.+ .+.++++||||+|.. +|+++++||+|||||||.++.|.++|+++|+..++. +||+++
T Consensus 1 I~~i~G~~~~~~l~~i~~~-~~~~~i~G~is~p~~--~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P~~v 77 (119)
T PF01119_consen 1 IAQIFGKEFASNLIEIDSE-DEDFSIEGYISKPDV--SRSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYPIFV 77 (119)
T ss_dssp HHHHHHHHHHCCEEEEEEE-ECCEEEEEEEE-SSC--SBSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-EEE
T ss_pred CeEeECHHHHhccEEEecc-CCCEEEEEEEECchh--ccCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCceEE
Confidence 6789999999999999988 778999999999975 699999999999999999999999999999999888 999999
Q ss_pred EEEEcCCCceeeeccCCCCEEEeCChhHHHHHHHHHHHHHh
Q 041466 203 MNFIVPTRACDVNVTPDKRKVFFSDECSILHALREGLQEIY 243 (824)
Q Consensus 203 L~i~~~p~~vDVNVhP~K~eV~f~~e~~v~~~i~~~l~~~l 243 (824)
|+|+|||+.|||||||+|++|+|.+|+.|+++|+++|+++|
T Consensus 78 L~i~~p~~~vDVNvhP~K~eV~f~~e~~i~~~i~~~i~~~L 118 (119)
T PF01119_consen 78 LFIEIPPSEVDVNVHPAKREVRFRDEDEILNLIEEAIREAL 118 (119)
T ss_dssp EEEE-SGGGEEETSSTTTT-EEETTHHHHHHHHHHHHHHHH
T ss_pred EEEEcchHHccccccccceEEEecCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998
No 12
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=99.95 E-value=5.4e-28 Score=234.64 Aligned_cols=124 Identities=49% Similarity=0.873 Sum_probs=116.7
Q ss_pred CHHHhHhhhccccccccceeeEeecC-----------------CceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCChH
Q 041466 119 SLKDNIITVFGMNIYNCLEPVAICKS-----------------DSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPK 181 (824)
Q Consensus 119 ~~~~~i~~v~G~~~~~~l~~i~~~~~-----------------~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~~ 181 (824)
+++++|..|||...++.|++++.. . ..++++|||++|....+|.++++||+|||||||.++.
T Consensus 1 ~~~~~i~~v~G~~~~~~li~v~~~-~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVN~R~V~~~~ 79 (142)
T cd03484 1 DIKDNIINVFGGKVIKGLIPINLE-LDVNPTKEELDSDEDLADSEVKITGYISKPSHGCGRSSSDRQFFYINGRPVDLKK 79 (142)
T ss_pred CHHHHHHHHhCHHHHhcccceecc-ccccccccccccccccCCCcEEEEEEECCCcccCCCCCCCcEEEEECCeecCCHH
Confidence 478999999999999999999976 4 6699999999995556799999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCcEEEEEEEcCCCceeeeccCCCCEEEeCChhHHHHHHHHHHHHHh
Q 041466 182 VSKLVNELYKGANSRQYPIAIMNFIVPTRACDVNVTPDKRKVFFSDECSILHALREGLQEIY 243 (824)
Q Consensus 182 l~~ai~~~y~~~~~~~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~e~~v~~~i~~~l~~~l 243 (824)
|.++|+++|+.++..+||+++|+|+|||+.|||||||+|++|+|++|+.|+++|+++|+.+|
T Consensus 80 l~~aI~~~y~~~~~~~~P~~vL~i~vp~~~vDvNVhP~K~eV~f~~e~~i~~~i~~~v~~~~ 141 (142)
T cd03484 80 VAKLINEVYKSFNSRQYPFFILNISLPTSLYDVNVTPDKRTVLLHDEDRLIDTLKTSLSELF 141 (142)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEEEEeCCcceeeeeCCccCEEEEcChHHHHHHHHHHHHHHh
Confidence 99999999999996699999999999999999999999999999999999999999999987
No 13
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=99.95 E-value=1.6e-27 Score=231.26 Aligned_cols=120 Identities=23% Similarity=0.427 Sum_probs=113.3
Q ss_pred CHHHhHhhhccccccccceeeEeecCCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhh------
Q 041466 119 SLKDNIITVFGMNIYNCLEPVAICKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKG------ 192 (824)
Q Consensus 119 ~~~~~i~~v~G~~~~~~l~~i~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~------ 192 (824)
+++++|.+|||...+..|++++.. .+.++|+||||+|. |+++++||+|||||||.++.|.++|+++|++
T Consensus 1 ~~~~~i~~i~G~~~~~~l~~v~~~-~~~~~v~G~is~p~----~~sk~~q~ifVN~R~v~~~~l~~aI~~~y~~~~~~~~ 75 (141)
T cd03486 1 SILSVFKQIYGLVLAQKLKEVSAK-FQEYEVSGYISSEG----HYSKSFQFIYVNGRLYLKTRFHKLINKLFRKTSAVAK 75 (141)
T ss_pred CHHHHHHHHhChhhhccEEEeecc-cCcEEEEEEEcCCC----CCCCceEEEEECCEEechHHHHHHHHHHHhhcccccc
Confidence 367899999999999999999987 77899999999995 7789999999999999999999999999999
Q ss_pred --cc-----------CC-CCcEEEEEEEcCCCceeeeccCCCCEEEeCChhHHHHHHHHHHHHHh
Q 041466 193 --AN-----------SR-QYPIAIMNFIVPTRACDVNVTPDKRKVFFSDECSILHALREGLQEIY 243 (824)
Q Consensus 193 --~~-----------~~-~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~e~~v~~~i~~~l~~~l 243 (824)
.+ +. +||+++|+|+|||..|||||||+|++|+|++|+.|+.+|+++|+++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~P~~vL~i~~p~~~vDvNvhP~K~eV~f~~~~~i~~~i~~~i~~~L 140 (141)
T cd03486 76 NKSSPQSKSSRRGKRSQESYPVFVLNITCPASEYDLSQEPSKTIIEFKDWKTLLPLILEVVKSFL 140 (141)
T ss_pred ccccccccccccccCCccCCCEEEEEEecCchHheeeeCCceeEEEecChHHHHHHHHHHHHHHh
Confidence 44 66 99999999999999999999999999999999999999999999987
No 14
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=99.95 E-value=1.9e-27 Score=225.13 Aligned_cols=120 Identities=40% Similarity=0.675 Sum_probs=114.9
Q ss_pred HHhHhhhccccccccceeeEeecCCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhhccCC-CCc
Q 041466 121 KDNIITVFGMNIYNCLEPVAICKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSR-QYP 199 (824)
Q Consensus 121 ~~~i~~v~G~~~~~~l~~i~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~~~~~-~~P 199 (824)
++++.++||......|++++.. .+.++++||+++|.. +|+++++||+|||||||..+.|.++|+++|+.+++. +||
T Consensus 2 ~~~i~~v~G~~~~~~l~~i~~~-~~~~~i~G~is~~~~--~~~~~~~q~~fVN~R~v~~~~l~~ai~~~y~~~~~~~~~P 78 (122)
T cd00782 2 KDRIAQVYGKEVAKNLIEVELE-SGDFRISGYISKPDF--GRSSKDRQFLFVNGRPVRDKLLSKAINEAYRSYLPKGRYP 78 (122)
T ss_pred HHHHHHHcCHHHHhcceEEecc-CCCEEEEEEEECchh--hcCCCccEEEEECCeEecCHHHHHHHHHHHHHhCcCCCCc
Confidence 5799999999999999999988 778999999999986 699999999999999999999999999999999996 999
Q ss_pred EEEEEEEcCCCceeeeccCCCCEEEeCChhHHHHHHHHHHHHHh
Q 041466 200 IAIMNFIVPTRACDVNVTPDKRKVFFSDECSILHALREGLQEIY 243 (824)
Q Consensus 200 ~~~L~i~~~p~~vDVNVhP~K~eV~f~~e~~v~~~i~~~l~~~l 243 (824)
+++|+|+|||+.|||||||+|++|+|++|+.|+++|+++|+++|
T Consensus 79 ~~~L~i~~~~~~~DvNvhP~K~eV~f~~~~~i~~~i~~~v~~~l 122 (122)
T cd00782 79 VFVLNLELPPELVDVNVHPTKREVRFSDEEEVLELIREALRSAL 122 (122)
T ss_pred EEEEEEEeChhheeeeeCCCCCEEEecCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999875
No 15
>smart00853 MutL_C MutL C terminal dimerisation domain. MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.
Probab=99.91 E-value=5.5e-24 Score=205.08 Aligned_cols=131 Identities=34% Similarity=0.555 Sum_probs=105.0
Q ss_pred cEEEEEEeCcEEEEEeCCcEEEEehhhHHHHHHHHHHhccc---CC-CcccccccceeecCHHHHHHHHHHHHHHHHcCe
Q 041466 617 MKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLSQST---VL-NQQPLLRPLKLDLTPEEEVVASMHMDIIRKNGF 692 (824)
Q Consensus 617 ~~vigQ~~~~fIl~~~~~~L~iIDQHAAhERi~yE~l~~~~---~~-~sQ~Ll~P~~l~Ls~~e~~~l~~~~~~L~~~Gf 692 (824)
+++|||++++|||++.+++|||||||||||||+||+|++.. .. .+|+|+.|+.++|++.+..++.++.+.|++|||
T Consensus 2 ~~~l~qv~~~yil~~~~~~l~liDqhaA~ERi~~e~l~~~~~~~~~~~~Q~Ll~P~~i~l~~~e~~~l~~~~~~l~~~Gf 81 (136)
T smart00853 2 GRVLGQVHGTYILAESEDGLVLIDQHAAHERILYEQLKAKLQAGLLEKSQPLLIPVILELSPEEAALLEEHQELLARLGF 81 (136)
T ss_pred ccEEEEEcCEEEEEEcCCCEEEEEhHHHHHHHHHHHHHHHHhcCCCccccccCCCEEEEcCHHHHHHHHHHHHHHHHcCe
Confidence 57999999999999999999999999999999999999753 33 479999999999999999999999999999999
Q ss_pred EEEecCCCCCccEEEEEeeCCCccccCChhhHHHHHHHHHhccCCcccccccccCCCCCCChHHHHHHHHHHH
Q 041466 693 SLEEDPHALAGLRFRLKAVPFSKKITFGVEDVKDLISTLADNQGECSIISSYKMDTADSVCPSRVRAMLASRA 765 (824)
Q Consensus 693 ~~e~~~~~~~~~~v~l~~vP~~~~~~l~~~d~~ell~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~A 765 (824)
+++.+ |++++.|+++|.+ +...+..+++.++++.... . .....+..++++++++|
T Consensus 82 ~~~~~----~~~~~~i~~vP~~----l~~~~~~~~l~~ll~~l~~---------~-~~~~~~~~~~~~la~~A 136 (136)
T smart00853 82 ELEIF----GGQSVILRSVPAL----LRQQNLQELIPELLDLLAE---------G-GSTSLPQLVEALLASLA 136 (136)
T ss_pred EEEcc----CCCEEEEEeECcc----ccCcCHHHHHHHHHHHHHh---------C-CCccHHHHHHHHHHhhC
Confidence 99985 4678999999997 4445555556555554321 0 01122555666777765
No 16
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.79 E-value=1e-18 Score=203.53 Aligned_cols=167 Identities=21% Similarity=0.219 Sum_probs=143.7
Q ss_pred HHHHHHHHHHhhcccCCc-----eEEEEEEeCCee--eEEEEeCCCCcCccchhhhHH----------------------
Q 041466 32 LSSAVKELVENSLDAGAT-----SIEIALKEYGEE--WFQVVDNGCGISPNNFKVRAV---------------------- 82 (824)
Q Consensus 32 p~svVKELvENSlDAgAt-----~I~V~i~~~G~~--~I~V~DnG~GI~~~d~~~l~~---------------------- 82 (824)
+.+||+|||+|||||+++ .|.|.+..+|.. .|.|.|||+||++++++.++.
T Consensus 37 L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GL 116 (659)
T PRK14867 37 MTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGA 116 (659)
T ss_pred HHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccH
Confidence 559999999999999987 799999876654 499999999999999775542
Q ss_pred --------------------------------------------------------------------------HHHHHH
Q 041466 83 --------------------------------------------------------------------------FLCQAY 88 (824)
Q Consensus 83 --------------------------------------------------------------------------~~l~~~ 88 (824)
+.|+++
T Consensus 117 a~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~~~~~~~GT~Ie~~V~dLFynR~E~~i~e~l~r~ 196 (659)
T PRK14867 117 AGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHKVREGFWRGTRVEGEFKEVTYNRREQGPFEYLRRI 196 (659)
T ss_pred HHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeecccccCCCCCCCcEEEEEEeeceechhhHHHHHHHHHH
Confidence 789999
Q ss_pred HhhCCceEEEEEEcCCCce-eeEEEEcCCCCCHHHhHhhhccccccccceeeEeecCCceEEEEEEeCCCCCCCCCCCCc
Q 041466 89 ALIAKGVRFVCTNTTGKNV-KSVVLKTQGSSSLKDNIITVFGMNIYNCLEPVAICKSDSCKVEGFLSKPGQGSGRNLGDR 167 (824)
Q Consensus 89 al~~p~v~f~l~~~~~~~~-~~~~~~t~~~~~~~~~i~~v~G~~~~~~l~~i~~~~~~~~~i~G~is~p~~~~~r~~~~~ 167 (824)
||+||+++|+|.++++... .+.++.+++ .+++++..+||.. ...|+++... .+.++|+||+ .|.+ .|.+++.
T Consensus 197 ALanP~i~f~l~~~~~~~~~~r~~~~lp~--~~~e~~ph~~G~~-~~~Li~i~~~-~~~~~v~gfl-~p~~--sR~~~~~ 269 (659)
T PRK14867 197 SLSTPHAKITLKDPEETVVFDRTVDEIPE--KPEEMKPHPYGLT-TDELLYIARK-TDSSKVSSML-NSEL--SRVTTKR 269 (659)
T ss_pred HHhCCCcEEEEEeCCccccCCcceeecCc--CHHHHhhccCccc-hhhceehhcc-CCceEEEEEe-cchh--ccCCCCc
Confidence 9999999999999853211 134566665 6899999999999 8899999877 7789999998 8886 6999999
Q ss_pred eEEEEcCcccCChHHHHHHHHHhhhccCC-CCcEEEEEEEcCCCc
Q 041466 168 QYFFVNDRPVDLPKVSKLVNELYKGANSR-QYPIAIMNFIVPTRA 211 (824)
Q Consensus 168 q~~fvN~R~v~~~~l~~ai~~~y~~~~~~-~~P~~~L~i~~~p~~ 211 (824)
|+ +|.++.|.+||.++|+.+++. +||+++|+|++||-.
T Consensus 270 ~~------~V~~~~l~~ai~~ay~~~l~~~~~P~~~L~l~i~~~~ 308 (659)
T PRK14867 270 IK------ELEEYVLRDLLLENYRDSVFWDTVVSCYLNFDFTKYF 308 (659)
T ss_pred EE------EEccHHHHHHHHHHHhhcccCCCcceEEEEEEeCccc
Confidence 98 888999999999999999999 999999999999965
No 17
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=99.75 E-value=2.2e-18 Score=158.22 Aligned_cols=101 Identities=39% Similarity=0.557 Sum_probs=93.7
Q ss_pred HHhHhhhccccccccceeeEeecCCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccC-ChHHHHHHHHHhhhcc---CC
Q 041466 121 KDNIITVFGMNIYNCLEPVAICKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVD-LPKVSKLVNELYKGAN---SR 196 (824)
Q Consensus 121 ~~~i~~v~G~~~~~~l~~i~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~-~~~l~~ai~~~y~~~~---~~ 196 (824)
++++..+||......|++++.. ...++++|+++.|.. .|.+++.||+||||||+. ...+.++|+++|+.++ +.
T Consensus 2 ~~~i~~~~g~~~~~~~~~~~~~-~~~~~v~g~l~~~~~--~~~~~~~~~~fvN~r~v~~~~~~~~~i~~~~~~~~~~~~~ 78 (107)
T cd00329 2 KDRLAEILGDKVADKLIYVEGE-SDGFRVEGAISYPDS--GRSSKDRQFSFVNGRPVREGGTHVKAVREAYTRALNGDDV 78 (107)
T ss_pred HhHHHHHhCHHhHhhcEEEecc-CCCEEEEEEEeCCcc--CcccCCcEEEEEcCeEEcCCHHHHHHHHHHHHHHhcccCC
Confidence 5789999999988889999877 677999999999986 388899999999999999 9999999999999998 66
Q ss_pred -CCcEEEEEEEcCCCceeeeccCCCCEEE
Q 041466 197 -QYPIAIMNFIVPTRACDVNVTPDKRKVF 224 (824)
Q Consensus 197 -~~P~~~L~i~~~p~~vDVNVhP~K~eV~ 224 (824)
+||+++|+|.||+..+||||||+|++|+
T Consensus 79 ~~~p~~vl~i~~~~~~~d~nv~p~K~~v~ 107 (107)
T cd00329 79 RRYPVAVLSLKIPPSLVDVNVHPTKEEVR 107 (107)
T ss_pred CCCCEEEEEEEeChHHeeeCCCCCccccC
Confidence 9999999999999999999999999984
No 18
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=99.21 E-value=9.9e-11 Score=138.61 Aligned_cols=195 Identities=18% Similarity=0.199 Sum_probs=134.0
Q ss_pred HHHHHHHHhhcccC----CceEEEEEEeCCeeeEEEEeCCCCcCccchhh--------hHH-------------------
Q 041466 34 SAVKELVENSLDAG----ATSIEIALKEYGEEWFQVVDNGCGISPNNFKV--------RAV------------------- 82 (824)
Q Consensus 34 svVKELvENSlDAg----At~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~--------l~~------------------- 82 (824)
.+|+|||+|||||+ ||.|.|.|..+| +|+|.|||.||+.+..+. ++-
T Consensus 4 ~~v~ElvdNAiD~~~~g~at~I~V~i~~~g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~ 81 (594)
T smart00433 4 HLVDEIVDNAADEALAGYMDTIKVTIDKDN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGL 81 (594)
T ss_pred EEEeeehhcccchhccCCCCEEEEEEeCCC--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCc
Confidence 47899999999998 999999999888 899999999999754321 110
Q ss_pred --------------------------------------------------------------------------HHHHHH
Q 041466 83 --------------------------------------------------------------------------FLCQAY 88 (824)
Q Consensus 83 --------------------------------------------------------------------------~~l~~~ 88 (824)
+.|+.+
T Consensus 82 ~G~Gls~vnalS~~l~v~~~~~g~~~~~~~~~~G~~~~~~~~~~~~~~~GT~V~F~Pd~~~F~~~~~~~~~~i~~rl~~~ 161 (594)
T smart00433 82 HGVGASVVNALSTEFEVEVARDGKEYKQSFSNNGKPLSEPKIIGDTKKDGTKVTFKPDLEIFGMTTDDDFELLKRRLREL 161 (594)
T ss_pred ccchHHHHHHhcCceEEEEEeCCcEEEEEEeCCCeECccceecCCCCCCCcEEEEEECHHHhCCcccchHHHHHHHHHHH
Confidence 888999
Q ss_pred HhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhccccccc--cceeeEeecCCceEEEEEEeCCCCCCCCCCCC
Q 041466 89 ALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIYN--CLEPVAICKSDSCKVEGFLSKPGQGSGRNLGD 166 (824)
Q Consensus 89 al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~~~~--~l~~i~~~~~~~~~i~G~is~p~~~~~r~~~~ 166 (824)
|+.+|+|+|.|.+... . ....|... +.+.+-+..+.+....- ..+.+... .+.+.++..+.... ....
T Consensus 162 A~l~pgl~i~l~der~-~-~~~~f~~~--~Gl~~yv~~~~~~~~~~~~~~i~~~~~-~~~~~veval~~~~-----~~~~ 231 (594)
T smart00433 162 AFLNKGVKITLNDERS-D-EEETFLFE--GGIKDYVELLNKNKELLSPEPTYIEGE-KDNIRVEVAFQYTD-----GYSE 231 (594)
T ss_pred HhcCCCcEEEEeccCC-C-cceEEECC--CCHHHHHHHHhCCCCcccCCCeEEEEE-eCCcEEEEEEEccC-----CCCc
Confidence 9999999999997531 1 12234433 45888887777543221 11233333 34577887777653 2245
Q ss_pred ceEEEEcCcccCC---------hHHHHHHHHHhhhccC-----------CCCcEEEEEEEcCCCceeeeccCCCCEEEeC
Q 041466 167 RQYFFVNDRPVDL---------PKVSKLVNELYKGANS-----------RQYPIAIMNFIVPTRACDVNVTPDKRKVFFS 226 (824)
Q Consensus 167 ~q~~fvN~R~v~~---------~~l~~ai~~~y~~~~~-----------~~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~ 226 (824)
.|+-|||+.+... ..|.++|++.++.... +.+.++|+++.+|.-.+| -.+|...-=.
T Consensus 232 ~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~~~k~~~i~~~diregl~~vIsvki~~P~Fe---gQTK~kL~n~ 308 (594)
T smart00433 232 NIVSFVNNIATTEGGTHENGFKDALTRVINEYAKKKKKLKEKNIKGEDVREGLTAFISVKIPEPQFE---GQTKEKLGTS 308 (594)
T ss_pred EEEEEECCccCCCCCcHHHHHHHHHHHHHHHHHHHhCccccCCCChhhHhhCeEEEEEEEEchheec---ccccccccCh
Confidence 7899999999984 5688888888765321 268899999999988887 3666654322
Q ss_pred Chh-HHHHHHHHHHHHHh
Q 041466 227 DEC-SILHALREGLQEIY 243 (824)
Q Consensus 227 ~e~-~v~~~i~~~l~~~l 243 (824)
.-. .|-..+.+.+..+|
T Consensus 309 ~~~~~v~~~v~~~l~~~l 326 (594)
T smart00433 309 EVRFGVEKIVSECLLSFL 326 (594)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 211 13344445555555
No 19
>PRK05218 heat shock protein 90; Provisional
Probab=99.20 E-value=7.7e-11 Score=139.87 Aligned_cols=192 Identities=16% Similarity=0.245 Sum_probs=135.7
Q ss_pred CcccCHHHHHHHHHHhhccc----------------CC--ceEEEEEEeCCeeeEEEEeCCCCcCccchhhhHH------
Q 041466 27 QVIKDLSSAVKELVENSLDA----------------GA--TSIEIALKEYGEEWFQVVDNGCGISPNNFKVRAV------ 82 (824)
Q Consensus 27 eVi~~p~svVKELvENSlDA----------------gA--t~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l~~------ 82 (824)
....+|..++.|||.||.|| ++ .+|.|.+..+|. .|.|.|||+||+.+|+.....
T Consensus 22 ~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~-~i~I~DnG~GMt~eel~~~l~~ia~Sg 100 (613)
T PRK05218 22 SLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEAR-TLTISDNGIGMTREEVIENLGTIAKSG 100 (613)
T ss_pred hhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCC-eEEEEECCCCCCHHHHHHHHHhhcccc
Confidence 45568899999999999999 33 367777767666 599999999999999874321
Q ss_pred --------------------------------------------------------------------------------
Q 041466 83 -------------------------------------------------------------------------------- 82 (824)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (824)
T Consensus 101 ~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~~i~~~~~~~~GT~I~l~Lk~ 180 (613)
T PRK05218 101 TKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEYTIEEIEKEERGTEITLHLKE 180 (613)
T ss_pred chhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCceeEEeECCCCCCCcEEEEEECc
Confidence
Q ss_pred ------------HHHHHHH--hhCCceEE-----EEEEcCCCceeeEEEEcCCCCCHHHhHhhhcccccc----ccceee
Q 041466 83 ------------FLCQAYA--LIAKGVRF-----VCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIY----NCLEPV 139 (824)
Q Consensus 83 ------------~~l~~~a--l~~p~v~f-----~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~~~----~~l~~i 139 (824)
++|++|| +.+| |.| .+.|+. +.+|..++ +++.+.....||..+. ..|..+
T Consensus 181 ~~~e~~e~~~i~~li~kys~~l~~P-I~~~~~~~~~in~~-----~~~w~~~~-~~i~~~~~~~fy~~~~~~~~~pl~~i 253 (613)
T PRK05218 181 DEDEFLDEWRIRSIIKKYSDFIPVP-IKLEKEEEETINSA-----SALWTRSK-SEITDEEYKEFYKHLAHDFDDPLFWI 253 (613)
T ss_pred chhhhcCHHHHHHHHHHHHhcCCCC-EEEecccceeecCC-----ccceecCC-ccccHHHHHHHhhhhcccccCCcEEE
Confidence 8899999 8888 888 455543 46666555 4788899999877664 448888
Q ss_pred EeecCCceEEEEEEeCCCCCC----CCCCCCceEEEEcCcccCChHHHHHHHHHhhhccCCCCcEEEEEEEcCCCceeee
Q 041466 140 AICKSDSCKVEGFLSKPGQGS----GRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSRQYPIAIMNFIVPTRACDVN 215 (824)
Q Consensus 140 ~~~~~~~~~i~G~is~p~~~~----~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~~~~~~~P~~~L~i~~~p~~vDVN 215 (824)
.+.....+.++|++..|.... .|..+.++.+|||||+|.+.. +.++|. | ..|+.=.|+.+.+=.|
T Consensus 254 ~~~~e~~~~~~gll~iP~~~~~~~~~~~~~~~~~lyvn~v~I~d~~---------~~lLP~-w-l~Fv~GVVDs~dLpln 322 (613)
T PRK05218 254 HNNVEGPFEYTGLLYIPKKAPFDLFNRDRKGGLKLYVKRVFIMDDA---------EELLPE-Y-LRFVKGVIDSEDLPLN 322 (613)
T ss_pred EcccCCceEEEEEEEeCCCCccchhhhcccccEEEEECcEEeeCch---------hhhchH-H-HhheEEEeecCCCCCc
Confidence 876355699999999887520 155778899999999998754 222333 0 0144446677777778
Q ss_pred ccCCCCEEEeCChhHHHHHHHHHHHHH
Q 041466 216 VTPDKRKVFFSDECSILHALREGLQEI 242 (824)
Q Consensus 216 VhP~K~eV~f~~e~~v~~~i~~~l~~~ 242 (824)
|. ||. ..++.++..|++.|.+.
T Consensus 323 vS---RE~--lq~~~~l~~i~~~l~~k 344 (613)
T PRK05218 323 VS---REI--LQEDRVVKKIRKAITKK 344 (613)
T ss_pred cC---HHH--HhcCHHHHHHHHHHHHH
Confidence 74 553 33445566666555543
No 20
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.14 E-value=5.1e-11 Score=139.83 Aligned_cols=118 Identities=27% Similarity=0.347 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhhcccCCc-----eEEEEEEeCCe-eeEEEEeCCCCcCccchhhhHH-----------------------
Q 041466 32 LSSAVKELVENSLDAGAT-----SIEIALKEYGE-EWFQVVDNGCGISPNNFKVRAV----------------------- 82 (824)
Q Consensus 32 p~svVKELvENSlDAgAt-----~I~V~i~~~G~-~~I~V~DnG~GI~~~d~~~l~~----------------------- 82 (824)
+..+|+|||+|||||+++ .|.|.+..+|. -.|.|.|||+||++++++.++.
T Consensus 47 L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLg 126 (795)
T PRK14868 47 LVTAVKEAVDNALDATEEAGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGIS 126 (795)
T ss_pred HHHHHHHHHHHHHHhCcccCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehH
Confidence 679999999999999987 69999988765 3799999999999999987764
Q ss_pred -------------------------------------------------------------------------HHHHHHH
Q 041466 83 -------------------------------------------------------------------------FLCQAYA 89 (824)
Q Consensus 83 -------------------------------------------------------------------------~~l~~~a 89 (824)
+.|+++|
T Consensus 127 lai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~Lf~N~pAR~kI~eyl~r~A 206 (795)
T PRK14868 127 AAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELEMEANMRARQQLHDYIKHTA 206 (795)
T ss_pred HHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEEEEEEccCchhhhHHHHHHHHH
Confidence 9999999
Q ss_pred hhCCceEEEEEEcCCCceeeEEEEc-CCCCCHHHhHhhh----ccccccccceeeEeecCCceEEEEEEeCCCC
Q 041466 90 LIAKGVRFVCTNTTGKNVKSVVLKT-QGSSSLKDNIITV----FGMNIYNCLEPVAICKSDSCKVEGFLSKPGQ 158 (824)
Q Consensus 90 l~~p~v~f~l~~~~~~~~~~~~~~t-~~~~~~~~~i~~v----~G~~~~~~l~~i~~~~~~~~~i~G~is~p~~ 158 (824)
|+||+++|.|.+++ .. +.+ .+++.+.+.+..| ||.++ ..|+++... .+.++|.||+ .|.+
T Consensus 207 l~nP~a~f~l~~~~-----~~-~~~~r~t~~lp~~p~eIkPHP~Gve~-~~L~~m~~~-t~~~~l~gFL-~~ef 271 (795)
T PRK14868 207 VVNPHARIELREPD-----ES-LKFERATDQLPAETEEIRPHPHGVEL-GTLLKMLEA-TDSYSVSGFL-QEEF 271 (795)
T ss_pred hhCCCeEEEEEECC-----EE-EEecccccccccCchhccCCCCCcCH-HHHHHHHhc-cCCcEeHHhh-hhhh
Confidence 99999999999973 22 334 6677899999999 99988 888888877 7789999999 7775
No 21
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.99 E-value=8.7e-09 Score=122.83 Aligned_cols=217 Identities=18% Similarity=0.181 Sum_probs=141.5
Q ss_pred CcccCChhHHHhhhcCCc-----ccCHHHHHHHHHHhhccc----CCceEEEEEEeCCeeeEEEEeCCCCcCccchhh--
Q 041466 11 TIRPINKGVVHRICAGQV-----IKDLSSAVKELVENSLDA----GATSIEIALKEYGEEWFQVVDNGCGISPNNFKV-- 79 (824)
Q Consensus 11 ~I~~L~~~~v~~IaageV-----i~~p~svVKELvENSlDA----gAt~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~-- 79 (824)
.|+.|..--.=+.+-|-. ..+|.++|+|||+||+|+ +|++|.|.|..+| +|+|.|||.||+.++.+.
T Consensus 12 ~i~~L~~lE~VrkRP~mYiGs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg--~I~V~DnGrGIP~~~~~~~~ 89 (631)
T PRK05559 12 SIEVLEGLEPVRKRPGMYIGSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADG--SVSVRDNGRGIPVGIHPEEG 89 (631)
T ss_pred HCeeccchHHHhcCCCceeCCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCCC--cEEEEEcCCCCCcccccccC
Confidence 466665444444445544 468999999999999999 8999999999887 799999999999987654
Q ss_pred ------hHH-----------------------------------------------------------------------
Q 041466 80 ------RAV----------------------------------------------------------------------- 82 (824)
Q Consensus 80 ------l~~----------------------------------------------------------------------- 82 (824)
++.
T Consensus 90 ~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~~~~~~f~~G~~~~~l~~~~~~~~~~~GT 169 (631)
T PRK05559 90 KSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSRLEVEVKRDGKVYRQRFEGGDPVGPLEVVGTAGKRKTGT 169 (631)
T ss_pred CcchheeeeeccccCccCCccccccCcccccchhhhhhheeeEEEEEEeCCeEEEEEEECCcCccCccccccccCCCCCc
Confidence 111
Q ss_pred ----------------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhccccc-cc-c-ce
Q 041466 83 ----------------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNI-YN-C-LE 137 (824)
Q Consensus 83 ----------------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~~-~~-~-l~ 137 (824)
+.|+++|+.+|+|+|.|.... .+..|... +.+.+.+..++.... .. . .+
T Consensus 170 ~V~f~PD~~iF~~~~~~~~~i~~~l~~~A~lnpgl~i~l~d~~----~~~~f~~~--~gl~~~v~~~~~~~~~i~~~~~i 243 (631)
T PRK05559 170 RVRFWPDPKIFDSPKFSPERLKERLRSKAFLLPGLTITLNDER----ERQTFHYE--NGLKDYLAELNEGKETLPEEFVG 243 (631)
T ss_pred EEEEEECHHHcCCcccCHHHHHHHHHHHHhhCCCeEEEEEeCC----ceEEEECC--ccHHHHHHHHhCCCCccCCCCce
Confidence 888999999999999999863 13456655 358999988886421 11 1 12
Q ss_pred eeEeecCCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCCh---------HHHHHHHHHhhhcc---------C---C
Q 041466 138 PVAICKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLP---------KVSKLVNELYKGAN---------S---R 196 (824)
Q Consensus 138 ~i~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~---------~l~~ai~~~y~~~~---------~---~ 196 (824)
.++.. .+...++.-+..... ....++-|||+-+-... .|.++|++..+... + +
T Consensus 244 ~~~~~-~~~~~veval~~~~~-----~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~in~~~~~~~l~k~~~~l~~~dir 317 (631)
T PRK05559 244 SFEGE-AEGEAVEWALQWTDE-----GGENIESYVNLIPTPQGGTHENGFREGLLKAVREFAEKRNLLPKGKKLEGEDVR 317 (631)
T ss_pred EEeee-eccceEEEEEEecCC-----CCeEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhCccccccCCChhhHh
Confidence 23222 223455544433221 12367889999988753 46677776554321 0 1
Q ss_pred CCcEEEEEEEcCCCceeeeccCCCCEEEeCCh-hHHHHHHHHHHHHHhc
Q 041466 197 QYPIAIMNFIVPTRACDVNVTPDKRKVFFSDE-CSILHALREGLQEIYS 244 (824)
Q Consensus 197 ~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~e-~~v~~~i~~~l~~~l~ 244 (824)
..=++|+++.++--.+| -.+|...-=..- ..+-..+.+.+..+|.
T Consensus 318 egl~~vvsvki~~P~Fe---gQTK~kL~n~~v~~~v~~~v~~~l~~~l~ 363 (631)
T PRK05559 318 EGLAAVLSVKIPEPQFE---GQTKEKLGSREARRFVSGVVKDAFDLWLN 363 (631)
T ss_pred hceEEEEEEEcCCCccc---CcccccccCHhHhhhhhhHHHHHHHHHHH
Confidence 34478888888766666 366665443322 2344555566666663
No 22
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.98 E-value=2.5e-08 Score=119.76 Aligned_cols=220 Identities=22% Similarity=0.253 Sum_probs=134.8
Q ss_pred cccCChhHHHhhhcCCcc-----cCHHHHHHHHHHhhcc---cC-CceEEEEEEeCCeeeEEEEeCCCCcCccchh----
Q 041466 12 IRPINKGVVHRICAGQVI-----KDLSSAVKELVENSLD---AG-ATSIEIALKEYGEEWFQVVDNGCGISPNNFK---- 78 (824)
Q Consensus 12 I~~L~~~~v~~IaageVi-----~~p~svVKELvENSlD---Ag-At~I~V~i~~~G~~~I~V~DnG~GI~~~d~~---- 78 (824)
|+.|..--.=+.+-|-.| .-+..+|+|||||||| || ||.|.|.|..+|. |+|.|||+||+.+-..
T Consensus 6 i~~L~~lE~vr~RP~mYiGs~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~g~--I~V~DnG~GIp~~~h~~~ki 83 (654)
T TIGR01059 6 IKVLEGLEAVRKRPGMYIGSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTINDDGS--VTVEDNGRGIPVDIHPEEGI 83 (654)
T ss_pred CeEecchHHHhcCCCceeCCCCcchHHhhhHHhhhccccccccCCCCEEEEEEeCCCc--EEEEEeCCCcCccccCcCCC
Confidence 555544444444555555 4568899999999999 99 9999999998884 9999999999975211
Q ss_pred ----hh-H-----------------------H------------------------------------------------
Q 041466 79 ----VR-A-----------------------V------------------------------------------------ 82 (824)
Q Consensus 79 ----~l-~-----------------------~------------------------------------------------ 82 (824)
.+ + +
T Consensus 84 ~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~~~~~~~~~G~~~~~l~~~~~~~~~GT~V~ 163 (654)
T TIGR01059 84 SAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGKIYRQEFERGIPLGPLEVVGETKKTGTTVR 163 (654)
T ss_pred CchHHheeeecccCccCCCcceecCCccchhHHHHHHhcCeEEEEEEECCeEEEEEEeCCCcccCceeccCCCCCCcEEE
Confidence 01 0 0
Q ss_pred -------------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhccccc-c-ccceeeEe
Q 041466 83 -------------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNI-Y-NCLEPVAI 141 (824)
Q Consensus 83 -------------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~~-~-~~l~~i~~ 141 (824)
+.|+++|++||+|+|.|.+......+...|.+++. +.+-+..+-..+. . ...+.++.
T Consensus 164 F~pdp~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~~G--l~~yv~~l~~~~~~l~~~~i~~~~ 241 (654)
T TIGR01059 164 FWPDPEIFETTEFDFDILAKRLRELAFLNSGVKISLEDERDGKGKSVTFHYEGG--IKSFVKYLNRNKEPLHEEIIYIKG 241 (654)
T ss_pred EEEChHHhCCcccCHHHHHHHHHHhhccCCCeEEEEEeecCCCCceeEEEcCCc--HHHHHHHHhcCCCcCCCCCeEEEe
Confidence 88999999999999999975322123445766653 6655544321111 1 11233333
Q ss_pred ecCCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCCh---------HHHHHHHHHhhhccC-C------------CCc
Q 041466 142 CKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLP---------KVSKLVNELYKGANS-R------------QYP 199 (824)
Q Consensus 142 ~~~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~---------~l~~ai~~~y~~~~~-~------------~~P 199 (824)
. .+.+.+..-+.... .....++-|||+-+-... .|.++|++..+.... + ..=
T Consensus 242 ~-~~~~~veva~~~~~-----~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~l~K~~~~~i~~~diregl 315 (654)
T TIGR01059 242 E-KEGIEVEVALQWND-----GYSENILSFVNNINTREGGTHLEGFRSALTRVINSYAKNNKLLKESKPNLTGEDIREGL 315 (654)
T ss_pred c-ccCeEEEEEEEecC-----CCceeEEEEECcccCCCCCcHHHHHHHHHHHHHHHHHHHhCcccccCCCCCHHHHhhcc
Confidence 2 23455555454332 122345789999876543 356666655433211 1 234
Q ss_pred EEEEEEEcCCCceeeeccCCCCEEEeCChh-HHHHHHHHHHHHHhc
Q 041466 200 IAIMNFIVPTRACDVNVTPDKRKVFFSDEC-SILHALREGLQEIYS 244 (824)
Q Consensus 200 ~~~L~i~~~p~~vDVNVhP~K~eV~f~~e~-~v~~~i~~~l~~~l~ 244 (824)
++|+++.++.-.+| -.+|...-=..-. .+...+.+.+..+|.
T Consensus 316 ~~vvsv~i~~P~F~---gQTK~kL~~~~v~~~v~~~v~~~l~~~l~ 358 (654)
T TIGR01059 316 TAVISVKVPDPQFE---GQTKTKLGNSEVRSIVESLVYEKLTEFFE 358 (654)
T ss_pred EEEEEEecCCCccc---CcccccccChhHHHHHHHHHHHHHHHHHH
Confidence 78888888876666 3666655422222 255666667777764
No 23
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.96 E-value=9.3e-09 Score=122.22 Aligned_cols=220 Identities=16% Similarity=0.118 Sum_probs=134.8
Q ss_pred CcccCChhHHHhhhcCCccc--CHHHHHHHHHHhhcc---c-CCceEEEEEEeCCeeeEEEEeCCCCcCccc--------
Q 041466 11 TIRPINKGVVHRICAGQVIK--DLSSAVKELVENSLD---A-GATSIEIALKEYGEEWFQVVDNGCGISPNN-------- 76 (824)
Q Consensus 11 ~I~~L~~~~v~~IaageVi~--~p~svVKELvENSlD---A-gAt~I~V~i~~~G~~~I~V~DnG~GI~~~d-------- 76 (824)
.|+.|.---.=|.+-|-.|- +|+++|+|||||||| | +|++|.|.|..+ .+|+|.|||+||+.++
T Consensus 8 ~i~~L~gle~VRkRPgMYigs~~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~d--~~I~V~DnGrGIp~~~h~~~g~~~ 85 (625)
T TIGR01055 8 DIEVLDGLEPVRKRPGMYTDTTRPNHLVQEVIDNSVDEALAGFASIIMVILHQD--QSIEVFDNGRGMPVDIHPKEGVSA 85 (625)
T ss_pred hceeecccHHhhcCCCCeeCCCCcceeehhhhhcccchhhcCCCCEEEEEEeCC--CeEEEEecCCccCcccccccCCcH
Confidence 46666655555666666663 799999999999999 9 699999999876 4799999999999988
Q ss_pred hhhhH-H-------------------------------------------------------------------------
Q 041466 77 FKVRA-V------------------------------------------------------------------------- 82 (824)
Q Consensus 77 ~~~l~-~------------------------------------------------------------------------- 82 (824)
++.++ .
T Consensus 86 ~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~ 165 (625)
T TIGR01055 86 VEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKRVKIKVYRQGKLYSIAFENGAKVTDLISAGTCGKRLTGTSVH 165 (625)
T ss_pred HHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCeEEEEEEECCeEEEEEEECCeEccccccccccCCCCCCeEEE
Confidence 65333 1
Q ss_pred -------------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhcccc-ccc-cceeeEe
Q 041466 83 -------------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMN-IYN-CLEPVAI 141 (824)
Q Consensus 83 -------------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~-~~~-~l~~i~~ 141 (824)
++|+++|++||+|+|.|.... ......|..++ .+.+-+..+...+ ... ..+....
T Consensus 166 F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~der--~~~~~~f~~~~--Gi~~yv~~l~~~~~~~~~~~~~~~~ 241 (625)
T TIGR01055 166 FTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFEDEV--NNTKALWNYPD--GLKDYLSEAVNGDNTLPPKPFSGNF 241 (625)
T ss_pred EEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEeecC--CCceeEEecCc--hHHHHHHHHhcCCCCCCCCceEEEE
Confidence 889999999999999998642 11123455444 4666655443221 111 1111111
Q ss_pred ecCCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCCh---------HHHHHHHHHhhhc--cCC----------CCcE
Q 041466 142 CKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLP---------KVSKLVNELYKGA--NSR----------QYPI 200 (824)
Q Consensus 142 ~~~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~---------~l~~ai~~~y~~~--~~~----------~~P~ 200 (824)
. .+.+.++--+.-... .....|+-|||+-+-... .|.++|++..+.. +++ ..=+
T Consensus 242 ~-~~~~~ve~al~~~~~----~~~~~~~SFvN~I~T~~GGTHv~gf~~alt~~in~~~~~~~~~kk~~~i~~~diregl~ 316 (625)
T TIGR01055 242 E-GDDEAVEWALLWLPE----GGELFMESYVNLIPTPQGGTHVNGLRQGLLDALREFCEMRNNLPRGVKLTAEDIWDRCS 316 (625)
T ss_pred e-eCCceEEEEEEEecC----CCCEEEEEeeccccCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccCCCCHHHHhhccE
Confidence 1 122333322222110 112356789999987753 4666666655432 111 2347
Q ss_pred EEEEEEcCCCceeeeccCCCCEEEeCC-hhHHHHHHHHHHHHHhc
Q 041466 201 AIMNFIVPTRACDVNVTPDKRKVFFSD-ECSILHALREGLQEIYS 244 (824)
Q Consensus 201 ~~L~i~~~p~~vDVNVhP~K~eV~f~~-e~~v~~~i~~~l~~~l~ 244 (824)
+|+++.++--.+| -.+|...-=.. ...+-..|...+..+|.
T Consensus 317 ~vVsvki~~P~Fe---gQTK~kL~n~~v~~~v~~~v~~~l~~~l~ 358 (625)
T TIGR01055 317 YVLSIKMQDPQFA---GQTKERLSSRQVAKFVSGVIKDAFDLWLN 358 (625)
T ss_pred EEEEEeccCCccc---CcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888766665 36666544222 12344455555555553
No 24
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.96 E-value=1.6e-08 Score=120.64 Aligned_cols=220 Identities=20% Similarity=0.222 Sum_probs=131.9
Q ss_pred CcccCChhHHHhhhcCCccc-----CHHHHHHHHHHhhcc---cC-CceEEEEEEeCCeeeEEEEeCCCCcCccchh---
Q 041466 11 TIRPINKGVVHRICAGQVIK-----DLSSAVKELVENSLD---AG-ATSIEIALKEYGEEWFQVVDNGCGISPNNFK--- 78 (824)
Q Consensus 11 ~I~~L~~~~v~~IaageVi~-----~p~svVKELvENSlD---Ag-At~I~V~i~~~G~~~I~V~DnG~GI~~~d~~--- 78 (824)
.|+.|..--.=+.+-|-.|- -+..+|+|||+|||| || ||+|.|.|..+| +|+|.|||+||+.+-..
T Consensus 12 ~i~~L~~lE~Vr~RPgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~g--~I~V~DnG~GIp~~~h~~~k 89 (638)
T PRK05644 12 QIQVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINEDG--SITVTDNGRGIPVDIHPKTG 89 (638)
T ss_pred HCeEecchHHHhcCCCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCCC--cEEEEEeCccccCCccCCCC
Confidence 35555544444455555554 346799999999999 99 999999999888 89999999999986321
Q ss_pred -----hhHH-----------------------------------------------------------------------
Q 041466 79 -----VRAV----------------------------------------------------------------------- 82 (824)
Q Consensus 79 -----~l~~----------------------------------------------------------------------- 82 (824)
.++-
T Consensus 90 i~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~~~~~~~~~G~~~~~~~~~~~~~~~GT~I 169 (638)
T PRK05644 90 KPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYYQEYERGVPVTPLEVIGETDETGTTV 169 (638)
T ss_pred CCchHHheeeecccCccCCCcccccCCccccchhhhhheeceEEEEEEeCCcEEEEEEECCeEccCccccCCcCCCCcEE
Confidence 1110
Q ss_pred --------------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhcccccc--ccceeeE
Q 041466 83 --------------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIY--NCLEPVA 140 (824)
Q Consensus 83 --------------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~~~--~~l~~i~ 140 (824)
+.|+.+|+.||+|+|.|.+......+...|..++ .+.+-+..+...... ...+.+.
T Consensus 170 ~F~Pd~~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~~--Gl~dyv~~l~~~~~~~~~~~i~~~ 247 (638)
T PRK05644 170 TFKPDPEIFETTEFDYDTLATRLRELAFLNKGLKITLTDEREGEEKEETFHYEG--GIKEYVEYLNRNKEPLHEEPIYFE 247 (638)
T ss_pred EEEECHHHcCCcccCHHHHHHHHHHHHhhCCCcEEEEEeccCCCcceeEEEcCC--CHHHHHHHHhcCCCcCCCCCeEEE
Confidence 8889999999999999997532211234566554 476666544322211 1122233
Q ss_pred eecCCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCCh---------HHHHHHHHHhhhccC-C------------CC
Q 041466 141 ICKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLP---------KVSKLVNELYKGANS-R------------QY 198 (824)
Q Consensus 141 ~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~---------~l~~ai~~~y~~~~~-~------------~~ 198 (824)
.. .+.+.+..-+.... .....++-|||+-+-... .|.++|++..+.... + .+
T Consensus 248 ~~-~~~~~veval~~~~-----~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~l~~~~~k~~~~Kk~~~~i~~~dIreg 321 (638)
T PRK05644 248 GE-KDGIEVEVAMQYND-----GYSENILSFANNINTHEGGTHEEGFKTALTRVINDYARKNKLLKEKDDNLTGEDVREG 321 (638)
T ss_pred ee-ccCeEEEEEEEecC-----CCceEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccCCCCChhHHhhc
Confidence 22 23345554443322 112346789999987643 355555554433211 1 23
Q ss_pred cEEEEEEEcCCCceeeeccCCCCEEEeCCh-hHHHHHHHHHHHHHh
Q 041466 199 PIAIMNFIVPTRACDVNVTPDKRKVFFSDE-CSILHALREGLQEIY 243 (824)
Q Consensus 199 P~~~L~i~~~p~~vDVNVhP~K~eV~f~~e-~~v~~~i~~~l~~~l 243 (824)
=++|+++.++.-.+| -.+|...-=..- ..|-..+.+.+..+|
T Consensus 322 l~~vVsv~i~nP~F~---gQTKekL~~~~v~~~v~~~v~~~l~~~l 364 (638)
T PRK05644 322 LTAVISVKHPEPQFE---GQTKTKLGNSEVRGIVDSVVSEALSEFL 364 (638)
T ss_pred eEEEEEEecCCCccc---CcccccccCHHHHHHHHHHHHHHHHHHH
Confidence 468888888876666 366655432211 223344444555555
No 25
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=98.77 E-value=1.7e-09 Score=104.72 Aligned_cols=49 Identities=41% Similarity=0.715 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHhhcccCCceEEEEEEeC--CeeeEEEEeCCCCcCccchhh
Q 041466 31 DLSSAVKELVENSLDAGATSIEIALKEY--GEEWFQVVDNGCGISPNNFKV 79 (824)
Q Consensus 31 ~p~svVKELvENSlDAgAt~I~V~i~~~--G~~~I~V~DnG~GI~~~d~~~ 79 (824)
+|..||+|||+|||||+|++|.|.|... +...|.|.|||.||+.++|..
T Consensus 2 ~~~~al~ElI~Ns~DA~a~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~ 52 (137)
T PF13589_consen 2 SPEDALRELIDNSIDAGATNIKISIDEDKKGERYIVIEDNGEGMSREDLES 52 (137)
T ss_dssp SCTHHHHHHHHHHHHHHHHHEEEEEEEETTTTTEEEEEESSS---HHHHHH
T ss_pred cHHHHHHHHHHHHHHccCCEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH
Confidence 4678999999999999999999999863 667899999999999999864
No 26
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.75 E-value=1.8e-07 Score=112.52 Aligned_cols=218 Identities=21% Similarity=0.237 Sum_probs=133.6
Q ss_pred CcccCChhHHHhhhcCCccc------CHHHHHHHHHHhhcc---cC-CceEEEEEEeCCeeeEEEEeCCCCcCcc-----
Q 041466 11 TIRPINKGVVHRICAGQVIK------DLSSAVKELVENSLD---AG-ATSIEIALKEYGEEWFQVVDNGCGISPN----- 75 (824)
Q Consensus 11 ~I~~L~~~~v~~IaageVi~------~p~svVKELvENSlD---Ag-At~I~V~i~~~G~~~I~V~DnG~GI~~~----- 75 (824)
.|+.|..--.=+.+-|-.|- -+..+|+|||+|||| || ||+|.|.|..+| +|+|.|||.||+.+
T Consensus 11 ~i~vL~gle~VRkRPgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dg--sIsV~DnGrGIPvd~h~~~ 88 (756)
T PRK14939 11 SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTIHADG--SVSVSDNGRGIPTDIHPEE 88 (756)
T ss_pred HCeEecccHHHhcCCCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEEcCCC--eEEEEEcCCcccCCccccc
Confidence 57777666556666666664 357899999999999 99 999999999887 79999999999987
Q ss_pred -----chhhhHH--------------------------------------------------------------------
Q 041466 76 -----NFKVRAV-------------------------------------------------------------------- 82 (824)
Q Consensus 76 -----d~~~l~~-------------------------------------------------------------------- 82 (824)
++. ++.
T Consensus 89 g~~~~Elv-lt~lhAggKfd~~~ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk~~~q~f~~G~~~~~l~~~g~~~~~GT 167 (756)
T PRK14939 89 GVSAAEVI-MTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSEWLELTIRRDGKIHEQEFEHGVPVAPLKVVGETDKTGT 167 (756)
T ss_pred CCchhhhe-eeeecccCCCCCCcccccCCccCccceEeehccCeEEEEEEeCCeEEEEEEecCccccCccccCCcCCCCc
Confidence 332 222
Q ss_pred ----------------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhcccc-cc-cccee
Q 041466 83 ----------------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMN-IY-NCLEP 138 (824)
Q Consensus 83 ----------------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~-~~-~~l~~ 138 (824)
+.|+.+|+.+|+|+|.|.... ..+...|...| .+.+-+..+-..+ .. ...+.
T Consensus 168 ~V~F~PD~~iF~~~~~~~~~i~~rl~elA~lnpgl~i~l~der--~~~~~~f~~eg--Gi~~fv~~l~~~~~~~~~~~i~ 243 (756)
T PRK14939 168 EVRFWPSPEIFENTEFDYDILAKRLRELAFLNSGVRIRLKDER--DGKEEEFHYEG--GIKAFVEYLNRNKTPLHPNIFY 243 (756)
T ss_pred EEEEEECHHHcCCcccCHHHHHHHHHHHhhcCCCCEEEEeccC--CCceeEEEeCC--hHHHHHHHHhcCCCcCCCCceE
Confidence 788999999999999999642 22234455544 3555444332111 11 12233
Q ss_pred eEeecCCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCCh---------HHHHHHHHHhhhc--cCC-----------
Q 041466 139 VAICKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLP---------KVSKLVNELYKGA--NSR----------- 196 (824)
Q Consensus 139 i~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~---------~l~~ai~~~y~~~--~~~----------- 196 (824)
+... .+.+.+..-+...+ .....++-|||+-+-... .|.++|++..+.. +.+
T Consensus 244 ~~~~-~~~~~veval~~~~-----~~~e~~~SFvN~I~T~~GGTHv~gf~~altr~in~y~~~~~l~K~~~~~l~~~dir 317 (756)
T PRK14939 244 FSGE-KDGIGVEVALQWND-----SYQENVLCFTNNIPQRDGGTHLAGFRAALTRTINNYIEKEGLAKKAKVSLTGDDAR 317 (756)
T ss_pred EEee-eCCeEEEEEEEEcC-----CCceeEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccCCCCCHhHHh
Confidence 4333 34456654444332 112346889999886643 3566666654331 111
Q ss_pred CCcEEEEEEEcCCCceeeeccCCCCEEEeCCh-hHHHHHHHHHHHHHhc
Q 041466 197 QYPIAIMNFIVPTRACDVNVTPDKRKVFFSDE-CSILHALREGLQEIYS 244 (824)
Q Consensus 197 ~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~e-~~v~~~i~~~l~~~l~ 244 (824)
..=++|+++.+|--.+| -.+|...-=..- ..|-..+.+.+..+|.
T Consensus 318 egl~~vvsvki~~P~Fe---gQTK~kL~n~ev~~~v~~~v~e~l~~~l~ 363 (756)
T PRK14939 318 EGLTAVLSVKVPDPKFS---SQTKDKLVSSEVRPAVESLVNEKLSEFLE 363 (756)
T ss_pred hceEEEEEEecCCCccc---CchhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 23468888888876665 355554332211 1233444455555553
No 27
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.59 E-value=1.2e-07 Score=108.61 Aligned_cols=53 Identities=32% Similarity=0.472 Sum_probs=45.3
Q ss_pred cCHHHHHHHHHHhhcccCCc-----eEEEEEEeCCee--eEEEEeCCCCcCccchhhhHH
Q 041466 30 KDLSSAVKELVENSLDAGAT-----SIEIALKEYGEE--WFQVVDNGCGISPNNFKVRAV 82 (824)
Q Consensus 30 ~~p~svVKELvENSlDAgAt-----~I~V~i~~~G~~--~I~V~DnG~GI~~~d~~~l~~ 82 (824)
..+.+||+|||+|||||+++ .|.|.+..+|.+ .|+|.|||+||++++++.++.
T Consensus 27 ~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~ 86 (488)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFG 86 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhh
Confidence 45779999999999999987 799999875543 799999999999999886654
No 28
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.53 E-value=2.2e-07 Score=107.62 Aligned_cols=50 Identities=42% Similarity=0.514 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhcccCCc-----eEEEEEE----eCCeeeEEEEeCCCCcCccchhhhH
Q 041466 32 LSSAVKELVENSLDAGAT-----SIEIALK----EYGEEWFQVVDNGCGISPNNFKVRA 81 (824)
Q Consensus 32 p~svVKELvENSlDAgAt-----~I~V~i~----~~G~~~I~V~DnG~GI~~~d~~~l~ 81 (824)
+..||+|||+|||||+++ .|.|.+. ++|...|.|.|||+||++++++.++
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF 95 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVF 95 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHh
Confidence 578999999999999987 5888887 4566789999999999999987664
No 29
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.01 E-value=1.2e-05 Score=89.19 Aligned_cols=52 Identities=35% Similarity=0.466 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHhhcccCC-----ceEEEEEEeCCee--eEEEEeCCCCcCccchhhhHH
Q 041466 31 DLSSAVKELVENSLDAGA-----TSIEIALKEYGEE--WFQVVDNGCGISPNNFKVRAV 82 (824)
Q Consensus 31 ~p~svVKELvENSlDAgA-----t~I~V~i~~~G~~--~I~V~DnG~GI~~~d~~~l~~ 82 (824)
++..+|+|||+|||||-- -.|.|+|+..|.+ .+.|.|||.||+.+.++.++-
T Consensus 36 sL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFG 94 (538)
T COG1389 36 SLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFG 94 (538)
T ss_pred HHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHH
Confidence 577899999999999943 4578888876665 588999999999999887655
No 30
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.74 E-value=0.00063 Score=81.52 Aligned_cols=63 Identities=30% Similarity=0.357 Sum_probs=50.4
Q ss_pred CcccCChhHHHhhhcCCcccC-----HHHHHHHHHHhhcc----cCCceEEEEEEeCCeeeEEEEeCCCCcCcc
Q 041466 11 TIRPINKGVVHRICAGQVIKD-----LSSAVKELVENSLD----AGATSIEIALKEYGEEWFQVVDNGCGISPN 75 (824)
Q Consensus 11 ~I~~L~~~~v~~IaageVi~~-----p~svVKELvENSlD----AgAt~I~V~i~~~G~~~I~V~DnG~GI~~~ 75 (824)
.|+.|..--.=+.+-|-.|-+ +..+|.|+|+||+| ..|+.|.|.|..+| +|.|.|||.||+.+
T Consensus 9 ~i~~L~glE~VRkRPgMYIGst~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~dg--sitV~DnGrGIPv~ 80 (637)
T TIGR01058 9 AIKILEGLDAVRKRPGMYIGSTDSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKDN--SITVQDDGRGIPTG 80 (637)
T ss_pred HCeeecccHHHhcCCCCeECCCCcchhheehhhhhcchhhhhhcCCCcEEEEEEcCCC--eEEEEECCCcccCc
Confidence 466666655556666666643 46789999999999 67999999999777 79999999999964
No 31
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=97.59 E-value=0.00012 Score=67.37 Aligned_cols=73 Identities=21% Similarity=0.381 Sum_probs=56.6
Q ss_pred cCHHHHHHHHHHhhcccCCc--eEEEEEEe-CCeeeEEEEeCCCCcCccchhhhHH-------------------HHHHH
Q 041466 30 KDLSSAVKELVENSLDAGAT--SIEIALKE-YGEEWFQVVDNGCGISPNNFKVRAV-------------------FLCQA 87 (824)
Q Consensus 30 ~~p~svVKELvENSlDAgAt--~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l~~-------------------~~l~~ 87 (824)
..+..++.||++||++++.. .|.|.+.. ++.-.|+|.|||.||+.++++.++. .+++.
T Consensus 4 ~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~~~~~~g~GlGL~~~~~ 83 (111)
T PF02518_consen 4 DRLRQILSELLDNAIKHSPEGGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDKSETSISGHGLGLYIVKQ 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSSSGGSSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecCeEEEEEEeccccccccccccchhhcccccccccccCCCChHHHHHHH
Confidence 45778999999999999887 99999986 4677899999999999988875433 55556
Q ss_pred HHhhCCceEEEEEEcC
Q 041466 88 YALIAKGVRFVCTNTT 103 (824)
Q Consensus 88 ~al~~p~v~f~l~~~~ 103 (824)
++-.+ +..+.+....
T Consensus 84 ~~~~~-~g~l~~~~~~ 98 (111)
T PF02518_consen 84 IAERH-GGELTIESSE 98 (111)
T ss_dssp HHHHT-TEEEEEEEET
T ss_pred HHHHC-CCEEEEEEcC
Confidence 66554 5556666553
No 32
>PRK14083 HSP90 family protein; Provisional
Probab=97.48 E-value=7.8e-05 Score=88.54 Aligned_cols=56 Identities=27% Similarity=0.375 Sum_probs=47.1
Q ss_pred cCCcccCHHHHHHHHHHhhcccCCc----------eEEEEEEeCCeeeEEEEeCCCCcCccchhhh
Q 041466 25 AGQVIKDLSSAVKELVENSLDAGAT----------SIEIALKEYGEEWFQVVDNGCGISPNNFKVR 80 (824)
Q Consensus 25 ageVi~~p~svVKELvENSlDAgAt----------~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l 80 (824)
+.....+|..+|.|||.||.||+++ .|.|.+.+.+...|.|.|||.||+.+++...
T Consensus 17 ~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~~~~l~I~DnGiGmt~eel~~~ 82 (601)
T PRK14083 17 SRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAGGGTLIVEDNGIGLTEEEVHEF 82 (601)
T ss_pred HHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCCCcEEEEEeCCCCCCHHHHHHH
Confidence 3467788999999999999999887 7888883345568999999999999998743
No 33
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.02 E-value=0.0018 Score=74.49 Aligned_cols=63 Identities=27% Similarity=0.362 Sum_probs=52.4
Q ss_pred HHhhhcCCcccCHHHHHHHHHHhhcccCC-----ceEEEEEEeCC-eeeEEEEeCCCCcCccchhhhHH
Q 041466 20 VHRICAGQVIKDLSSAVKELVENSLDAGA-----TSIEIALKEYG-EEWFQVVDNGCGISPNNFKVRAV 82 (824)
Q Consensus 20 v~~IaageVi~~p~svVKELvENSlDAgA-----t~I~V~i~~~G-~~~I~V~DnG~GI~~~d~~~l~~ 82 (824)
+....++-....+.++|-.|++||+||=+ +.|++.+.+.| .--|+|.||||||+++..+.++.
T Consensus 416 l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe 484 (537)
T COG3290 416 LPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFE 484 (537)
T ss_pred CCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHh
Confidence 33445667778899999999999999977 89999998754 44699999999999998876665
No 34
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.60 E-value=0.0097 Score=63.55 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHhhcccC-CceEEEEEEeCC-eeeEEEEeCCCCcCccchhhhHH----------------HHHHHHHhhC
Q 041466 31 DLSSAVKELVENSLDAG-ATSIEIALKEYG-EEWFQVVDNGCGISPNNFKVRAV----------------FLCQAYALIA 92 (824)
Q Consensus 31 ~p~svVKELvENSlDAg-At~I~V~i~~~G-~~~I~V~DnG~GI~~~d~~~l~~----------------~~l~~~al~~ 92 (824)
.+..|+..|+.||++|. ...|.|.+...+ .-.|+|.|||.||++++.+.++. .+++.+...|
T Consensus 228 ~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~g~GlGL~i~~~~~~~~ 307 (336)
T COG0642 228 RLRQVLVNLLSNAIKYTPGGEITISVRQDDEQVTISVEDTGPGIPEEELERIFEPFFRTDKSRSGTGLGLAIVKRIVELH 307 (336)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCCCCCccHHHHHHHHHHc
Confidence 47789999999999999 599999988654 35799999999999998654433 6666655566
Q ss_pred CceEEEEEEcC
Q 041466 93 KGVRFVCTNTT 103 (824)
Q Consensus 93 p~v~f~l~~~~ 103 (824)
.+. ..+....
T Consensus 308 ~g~-i~~~~~~ 317 (336)
T COG0642 308 GGT-ISVESEP 317 (336)
T ss_pred CCE-EEEEecC
Confidence 555 5665543
No 35
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.55 E-value=0.0072 Score=69.42 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhcccCCce------EEEEEEe-CCeeeEEEEeCCCCcCccchhhh-----------------HHHHHHH
Q 041466 32 LSSAVKELVENSLDAGATS------IEIALKE-YGEEWFQVVDNGCGISPNNFKVR-----------------AVFLCQA 87 (824)
Q Consensus 32 p~svVKELvENSlDAgAt~------I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l-----------------~~~~l~~ 87 (824)
+..|+.+|+.||+++.+.. |.|.+.. ++.-.|.|.|||.||++++...+ ++.+++.
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~G~GlGL~i~~~ 467 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGSRKHIGMGLSVAQE 467 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCCCCCCcccHHHHHH
Confidence 6789999999999985443 6666543 45568999999999999886543 3366666
Q ss_pred HHhhCCceEEEEEEcCCCc
Q 041466 88 YALIAKGVRFVCTNTTGKN 106 (824)
Q Consensus 88 ~al~~p~v~f~l~~~~~~~ 106 (824)
++-.| +-++.+....|+|
T Consensus 468 iv~~~-gG~i~~~s~~~~G 485 (494)
T TIGR02938 468 IVADH-GGIIDLDDDYSEG 485 (494)
T ss_pred HHHHc-CCEEEEEECCCCC
Confidence 66655 5566666555444
No 36
>PRK10604 sensor protein RstB; Provisional
Probab=96.39 E-value=0.012 Score=67.64 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhcccCCceEEEEEEe-CCeeeEEEEeCCCCcCccchhhh
Q 041466 32 LSSAVKELVENSLDAGATSIEIALKE-YGEEWFQVVDNGCGISPNNFKVR 80 (824)
Q Consensus 32 p~svVKELvENSlDAgAt~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l 80 (824)
+..|+..||+||+..+...|.|.+.. ++.-.|.|.|||.||++++++.+
T Consensus 320 l~~vl~NLl~NAik~~~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~i 369 (433)
T PRK10604 320 MERVLDNLLNNALRYAHSRVRVSLLLDGNQACLIVEDDGPGIPPEERERV 369 (433)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhc
Confidence 56789999999999999999998864 34447999999999999887533
No 37
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.31 E-value=0.015 Score=68.18 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=54.3
Q ss_pred cCHHHHHHHHHHhhcccC----CceEEEEEEe-CCeeeEEEEeCCCCcCccchhhhHH--------------HHHHHHHh
Q 041466 30 KDLSSAVKELVENSLDAG----ATSIEIALKE-YGEEWFQVVDNGCGISPNNFKVRAV--------------FLCQAYAL 90 (824)
Q Consensus 30 ~~p~svVKELvENSlDAg----At~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l~~--------------~~l~~~al 90 (824)
.++..|+.+|++||+++. ...|.|.+.. ++.-.|+|.|||.||++++.+.++. .+++.++-
T Consensus 432 ~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~~g~GlGL~iv~~iv~ 511 (542)
T PRK11086 432 HELITILGNLIENALEAVGGEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGSNRGVGLYLVKQSVE 511 (542)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhCCCccCCCCCcCcHHHHHHHHH
Confidence 357789999999999984 3578887764 4445799999999999988775543 56666665
Q ss_pred hCCceEEEEEEcCCCc
Q 041466 91 IAKGVRFVCTNTTGKN 106 (824)
Q Consensus 91 ~~p~v~f~l~~~~~~~ 106 (824)
.| +-++.+....|.+
T Consensus 512 ~~-~G~i~v~s~~~~G 526 (542)
T PRK11086 512 NL-GGSIAVESEPGVG 526 (542)
T ss_pred Hc-CCEEEEEeCCCCc
Confidence 55 3356665544443
No 38
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.27 E-value=0.017 Score=68.17 Aligned_cols=75 Identities=20% Similarity=0.397 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHhhccc------CCceEEEEEEeC-CeeeEEEEeCCCCcCccchhhhH-----------------HHHHH
Q 041466 31 DLSSAVKELVENSLDA------GATSIEIALKEY-GEEWFQVVDNGCGISPNNFKVRA-----------------VFLCQ 86 (824)
Q Consensus 31 ~p~svVKELvENSlDA------gAt~I~V~i~~~-G~~~I~V~DnG~GI~~~d~~~l~-----------------~~~l~ 86 (824)
.+..++.+|++||+++ |.+.|.|.+... +.-.|.|.|||.||++++.+.++ +.+++
T Consensus 432 ~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~~~g~GlGL~ivk 511 (545)
T PRK15053 432 EFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADEPGEHGIGLYLIA 511 (545)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCCCCCceeCHHHHH
Confidence 3567899999999998 457898887753 44579999999999988766443 25666
Q ss_pred HHHhhCCceEEEEEEcCCCc
Q 041466 87 AYALIAKGVRFVCTNTTGKN 106 (824)
Q Consensus 87 ~~al~~p~v~f~l~~~~~~~ 106 (824)
.++-.|-+ .+.+....|.|
T Consensus 512 ~iv~~~~G-~i~v~s~~~~G 530 (545)
T PRK15053 512 SYVTRCGG-VITLEDNDPCG 530 (545)
T ss_pred HHHHHcCC-EEEEEECCCCe
Confidence 66666544 55665554443
No 39
>PRK10364 sensor protein ZraS; Provisional
Probab=96.27 E-value=0.014 Score=67.39 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHhhcccC--CceEEEEEEeC-CeeeEEEEeCCCCcCccchhhh
Q 041466 31 DLSSAVKELVENSLDAG--ATSIEIALKEY-GEEWFQVVDNGCGISPNNFKVR 80 (824)
Q Consensus 31 ~p~svVKELvENSlDAg--At~I~V~i~~~-G~~~I~V~DnG~GI~~~d~~~l 80 (824)
++..++..|++||+++. ...|.|.+... +.-.|+|.|||.||++++++.+
T Consensus 348 ~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~i 400 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQLEAI 400 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHH
Confidence 46788999999999983 45788887653 3347999999999999987644
No 40
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=96.23 E-value=0.0084 Score=52.39 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhcccCC---ceEEEEEEeC-CeeeEEEEeCCCCcCccchh
Q 041466 32 LSSAVKELVENSLDAGA---TSIEIALKEY-GEEWFQVVDNGCGISPNNFK 78 (824)
Q Consensus 32 p~svVKELvENSlDAgA---t~I~V~i~~~-G~~~I~V~DnG~GI~~~d~~ 78 (824)
+..++.||++||+++++ ..|.|.+... +.-.|.|.|+|.||++..+.
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~ 51 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIPEEDLE 51 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHH
Confidence 35789999999999998 6777777653 35579999999999988765
No 41
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.21 E-value=0.023 Score=63.25 Aligned_cols=71 Identities=23% Similarity=0.292 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhcccC--CceEEEEEEe-CCeeeEEEEeCCCCcCccchhhh----------------HHHHHHHHHhhC
Q 041466 32 LSSAVKELVENSLDAG--ATSIEIALKE-YGEEWFQVVDNGCGISPNNFKVR----------------AVFLCQAYALIA 92 (824)
Q Consensus 32 p~svVKELvENSlDAg--At~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l----------------~~~~l~~~al~~ 92 (824)
+..|+..||+||+..+ .+.|.|.+.. ++.-.|.|.|||.||++++++.+ ++.++++.+..|
T Consensus 248 l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~g~GlGL~i~~~i~~~~ 327 (356)
T PRK10755 248 LRLLLRNLVENAHRYSPEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRMDSRYGGIGLGLSIVSRITQLH 327 (356)
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCCCCCCcCHHHHHHHHHHHHC
Confidence 3578999999999985 4678887753 44557999999999999987643 335556655555
Q ss_pred CceEEEEEEcC
Q 041466 93 KGVRFVCTNTT 103 (824)
Q Consensus 93 p~v~f~l~~~~ 103 (824)
+-.+.+....
T Consensus 328 -gg~i~i~s~~ 337 (356)
T PRK10755 328 -HGQFFLQNRQ 337 (356)
T ss_pred -CCEEEEEECC
Confidence 3456665543
No 42
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.20 E-value=0.018 Score=65.75 Aligned_cols=47 Identities=34% Similarity=0.558 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhcccCCceEEEEEEe-CCeeeEEEEeCCCCcCccchh
Q 041466 32 LSSAVKELVENSLDAGATSIEIALKE-YGEEWFQVVDNGCGISPNNFK 78 (824)
Q Consensus 32 p~svVKELvENSlDAgAt~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~ 78 (824)
+..++.+||+||+..|...|.|.+.. ++.-.|+|.|||.||++++++
T Consensus 332 l~~il~NLl~NA~k~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~ 379 (435)
T PRK09467 332 IKRALANLVVNAARYGNGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLK 379 (435)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEecCCEEEEEEEecCCCcCHHHHH
Confidence 35689999999999999999998865 344579999999999998765
No 43
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.05 E-value=0.027 Score=64.46 Aligned_cols=47 Identities=23% Similarity=0.436 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhcccCC--ceEEEEEEeCC-eeeEEEEeCCCCcCccchh
Q 041466 32 LSSAVKELVENSLDAGA--TSIEIALKEYG-EEWFQVVDNGCGISPNNFK 78 (824)
Q Consensus 32 p~svVKELvENSlDAgA--t~I~V~i~~~G-~~~I~V~DnG~GI~~~d~~ 78 (824)
+..++.+|+.||++.+. ..|.|++...| .-.|+|.|||.||+++.+.
T Consensus 354 l~~~~~nll~Nai~~~~~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~ 403 (457)
T TIGR01386 354 FRRAISNLLSNALRHTPDGGTITVRIERRSDEVRVSVSNPGPGIPPEHLS 403 (457)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEEEecCCEEEEEEEeCCCCCCHHHHH
Confidence 45689999999999873 57888887644 4479999999999998764
No 44
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.03 E-value=0.023 Score=64.31 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhcccCC--ceEEEEEE--eCCeeeEEEEeCCCCcCccchhhhH
Q 041466 32 LSSAVKELVENSLDAGA--TSIEIALK--EYGEEWFQVVDNGCGISPNNFKVRA 81 (824)
Q Consensus 32 p~svVKELvENSlDAgA--t~I~V~i~--~~G~~~I~V~DnG~GI~~~d~~~l~ 81 (824)
+..|+..||.||+.++. ..|.|.+. .++.-.|.|.|||.||++++.+.++
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF 326 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIF 326 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHc
Confidence 56899999999999875 46666653 3444579999999999998876443
No 45
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=95.90 E-value=0.029 Score=64.41 Aligned_cols=75 Identities=25% Similarity=0.326 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHhhcccCC--ceEEEEEEe-CCeeeEEEEeCCCCcCccchhhh--------------------HHHHHHH
Q 041466 31 DLSSAVKELVENSLDAGA--TSIEIALKE-YGEEWFQVVDNGCGISPNNFKVR--------------------AVFLCQA 87 (824)
Q Consensus 31 ~p~svVKELvENSlDAgA--t~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l--------------------~~~~l~~ 87 (824)
.+..|+.+|+.||+++.. ..|.|.+.. ++.-.|.|.|||.||++++++.+ ++.++++
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~ 396 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKH 396 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHH
Confidence 467899999999999964 457777654 34457999999999999876544 3366666
Q ss_pred HHhhCCceEEEEEEcCCCc
Q 041466 88 YALIAKGVRFVCTNTTGKN 106 (824)
Q Consensus 88 ~al~~p~v~f~l~~~~~~~ 106 (824)
++-.| +-.+.+.+..|.|
T Consensus 397 iv~~~-gG~i~i~s~~~~G 414 (430)
T PRK11006 397 ALSHH-DSRLEIESEVGKG 414 (430)
T ss_pred HHHHC-CCEEEEEecCCCc
Confidence 66655 4466666544443
No 46
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=95.81 E-value=0.048 Score=62.63 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHhhcccCC--ceEEEEEEe-CCeeeEEEEeCCCCcCccchhhh
Q 041466 31 DLSSAVKELVENSLDAGA--TSIEIALKE-YGEEWFQVVDNGCGISPNNFKVR 80 (824)
Q Consensus 31 ~p~svVKELvENSlDAgA--t~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l 80 (824)
.+..++.+||+||+.++. +.|.|++.. ++.-.|.|.|||.||+++++..+
T Consensus 368 ~l~~vl~nli~Na~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i 420 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSPEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRI 420 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHH
Confidence 367899999999999853 678888874 44457999999999998776533
No 47
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=95.78 E-value=0.037 Score=63.51 Aligned_cols=47 Identities=30% Similarity=0.386 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhcccCCceEEEEEEe-CCeeeEEEEeCCCCcCccchh
Q 041466 32 LSSAVKELVENSLDAGATSIEIALKE-YGEEWFQVVDNGCGISPNNFK 78 (824)
Q Consensus 32 p~svVKELvENSlDAgAt~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~ 78 (824)
+..++.+||+||+..+.+.|.|.+.. ++.-.|+|.|||.||++++++
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~ 401 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSVDKDGLTITVDDDGPGVPEEERE 401 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEEECCEEEEEEEECCCCCCHHHHH
Confidence 45689999999999999999998764 444479999999999998765
No 48
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=95.78 E-value=0.0051 Score=74.27 Aligned_cols=48 Identities=23% Similarity=0.330 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHhhcccCCc----------------eEEEEEEe-CCeeeEEEEeCCCCcCccchh
Q 041466 31 DLSSAVKELVENSLDAGAT----------------SIEIALKE-YGEEWFQVVDNGCGISPNNFK 78 (824)
Q Consensus 31 ~p~svVKELvENSlDAgAt----------------~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~ 78 (824)
.+.-.++|||.||.||... .|.|+|.. .....|.|.|||.||+.+|+.
T Consensus 25 ~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt~edl~ 89 (701)
T PTZ00272 25 NKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLV 89 (701)
T ss_pred CccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCCHHHHH
Confidence 4456799999999999533 34444432 223479999999999999965
No 49
>PRK10815 sensor protein PhoQ; Provisional
Probab=95.73 E-value=0.037 Score=64.90 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhcccCCceEEEEEEe-CCeeeEEEEeCCCCcCccchhhh
Q 041466 32 LSSAVKELVENSLDAGATSIEIALKE-YGEEWFQVVDNGCGISPNNFKVR 80 (824)
Q Consensus 32 p~svVKELvENSlDAgAt~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l 80 (824)
+..|+..||.||++++...|+|.+.. ++.-.|.|.|||.||++++++.+
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~i 428 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQTDEHLHIVVEDDGPGIPESKRELI 428 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHH
Confidence 46799999999999998888888764 44457999999999999887543
No 50
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=95.68 E-value=0.11 Score=46.02 Aligned_cols=48 Identities=25% Similarity=0.432 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHhhcccCCc--eEEEEEEe-CCeeeEEEEeCCCCcCccchh
Q 041466 31 DLSSAVKELVENSLDAGAT--SIEIALKE-YGEEWFQVVDNGCGISPNNFK 78 (824)
Q Consensus 31 ~p~svVKELvENSlDAgAt--~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~ 78 (824)
.+.-++.||+.|+++++++ .|.|.+.. ++...|.|.|+|.||+.+.+.
T Consensus 5 ~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~ 55 (111)
T smart00387 5 RLRQVLSNLLDNAIKYTPEGGRITVTLERDGDHLEITVEDNGPGIPPEDLE 55 (111)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHH
Confidence 4667899999999999986 88887765 356689999999999986654
No 51
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.59 E-value=0.014 Score=67.90 Aligned_cols=53 Identities=32% Similarity=0.401 Sum_probs=43.6
Q ss_pred cCHHHHHHHHHHhhcccCC----ceEEEEEE-eCCeeeEEEEeCCCCcCccchhhhHH
Q 041466 30 KDLSSAVKELVENSLDAGA----TSIEIALK-EYGEEWFQVVDNGCGISPNNFKVRAV 82 (824)
Q Consensus 30 ~~p~svVKELvENSlDAgA----t~I~V~i~-~~G~~~I~V~DnG~GI~~~d~~~l~~ 82 (824)
.|+-+|+-.||.|||||=+ .+|.|.+. ++|.-.|.|.|||+||.++-+..|+.
T Consensus 496 iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFe 553 (603)
T COG4191 496 IRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFE 553 (603)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcC
Confidence 4789999999999999943 57888776 45666899999999999987776654
No 52
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=95.50 E-value=0.045 Score=66.89 Aligned_cols=74 Identities=28% Similarity=0.522 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhcccCC--ceEEEEEEe-CCeeeEEEEeCCCCcCccc-hh--------------hhHHHHHHHHHhhCC
Q 041466 32 LSSAVKELVENSLDAGA--TSIEIALKE-YGEEWFQVVDNGCGISPNN-FK--------------VRAVFLCQAYALIAK 93 (824)
Q Consensus 32 p~svVKELvENSlDAgA--t~I~V~i~~-~G~~~I~V~DnG~GI~~~d-~~--------------~l~~~~l~~~al~~p 93 (824)
...|+.+|+.||+++.. ..|.|++.. ++.-.|+|.|||.||+++. .+ .+++.++++++-.|
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~~G~GLGL~i~~~iv~~~- 658 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKGAGMGIGVYECRQYVEEI- 658 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCCCCcchhHHHHHHHHHHc-
Confidence 56799999999999964 468888874 4556799999999999987 33 34447777777665
Q ss_pred ceEEEEEEcCCCc
Q 041466 94 GVRFVCTNTTGKN 106 (824)
Q Consensus 94 ~v~f~l~~~~~~~ 106 (824)
+-++.+.+..|+|
T Consensus 659 gG~i~v~s~~g~G 671 (679)
T TIGR02916 659 GGRIEVESTPGQG 671 (679)
T ss_pred CCEEEEEecCCCc
Confidence 4467776654443
No 53
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=95.37 E-value=0.071 Score=61.42 Aligned_cols=49 Identities=22% Similarity=0.286 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhcccCCc--eEEEEEEe-CCeeeEEEEeCCCCcCccchhhh
Q 041466 32 LSSAVKELVENSLDAGAT--SIEIALKE-YGEEWFQVVDNGCGISPNNFKVR 80 (824)
Q Consensus 32 p~svVKELvENSlDAgAt--~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l 80 (824)
+..++.+||+||+..+.. .|.|.+.. ++.-.|.|.|||.||++++++.+
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~l 404 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKL 404 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHh
Confidence 567899999999998543 57777664 34447999999999999887543
No 54
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=95.35 E-value=0.067 Score=62.94 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhccc-CCceEEEEEEe-CCeeeEEEEeCCCCcCccchh-hhHHHHHHHHHhhCCceEEEEEE
Q 041466 32 LSSAVKELVENSLDA-GATSIEIALKE-YGEEWFQVVDNGCGISPNNFK-VRAVFLCQAYALIAKGVRFVCTN 101 (824)
Q Consensus 32 p~svVKELvENSlDA-gAt~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~-~l~~~~l~~~al~~p~v~f~l~~ 101 (824)
...++.||+.||+.. +++.|.|.+.. ++.-.|+|.|||.||++++.. .+++.++++.+-.| +-++.+.+
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~~~~~GLGL~ivr~iv~~~-GG~i~v~S 482 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIEDDGSGLPPGSGQQGFGLRGMRERVTAL-GGTLTISC 482 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEcCCEEEEEEEECCCCCCcCCCCCCCcHHHHHHHHHHc-CCEEEEEc
Confidence 445899999999995 56788888764 444579999999999987753 45667777777665 44777766
No 55
>PTZ00130 heat shock protein 90; Provisional
Probab=95.32 E-value=0.0067 Score=73.64 Aligned_cols=53 Identities=19% Similarity=0.374 Sum_probs=40.9
Q ss_pred CCcccCHHHHHHHHHHhhcccCC----------------ceEEEEEEeC-CeeeEEEEeCCCCcCccchh
Q 041466 26 GQVIKDLSSAVKELVENSLDAGA----------------TSIEIALKEY-GEEWFQVVDNGCGISPNNFK 78 (824)
Q Consensus 26 geVi~~p~svVKELvENSlDAgA----------------t~I~V~i~~~-G~~~I~V~DnG~GI~~~d~~ 78 (824)
.-...++--.++|||-||.||.+ +.+.|+|... ....|.|.|||.||+++|+.
T Consensus 83 ~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eEl~ 152 (814)
T PTZ00130 83 NSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLI 152 (814)
T ss_pred hccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHHHH
Confidence 45667778889999999999986 3455555432 23479999999999999975
No 56
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=95.30 E-value=0.0069 Score=70.80 Aligned_cols=86 Identities=31% Similarity=0.350 Sum_probs=61.4
Q ss_pred CCcccCChhHHHhhhcCCccc------CHHHHHHHHHHhhccc----CCceEEEEEEeCCeeeEEEEeCCCCcCccchhh
Q 041466 10 PTIRPINKGVVHRICAGQVIK------DLSSAVKELVENSLDA----GATSIEIALKEYGEEWFQVVDNGCGISPNNFKV 79 (824)
Q Consensus 10 ~~I~~L~~~~v~~IaageVi~------~p~svVKELvENSlDA----gAt~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~ 79 (824)
..|+.|..--.-+.+-|-.|- .|-..|.|.|+||+|= -|+.|.|.|...| +|+|.|||.||+-+--+
T Consensus 9 ~~I~vL~GLEaVRkRPGMYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~--sisV~DnGRGIPvdiH~- 85 (635)
T COG0187 9 SSIQVLEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDG--SISVEDNGRGIPVDIHP- 85 (635)
T ss_pred hHceeccCcHHhhcCCCceeccCCCCCcceeeEeEeeechHhHHhhCcCcEEEEEEcCCC--eEEEEECCCCCccccCC-
Confidence 357777666666666776654 4666999999999994 4999999998766 69999999999976422
Q ss_pred hHHHHHHHHHhhCCceEEEEEEcCCC
Q 041466 80 RAVFLCQAYALIAKGVRFVCTNTTGK 105 (824)
Q Consensus 80 l~~~~l~~~al~~p~v~f~l~~~~~~ 105 (824)
..-..-++|-|+.-|-+||
T Consensus 86 -------~~~~~~vEvI~T~LHAGGK 104 (635)
T COG0187 86 -------KEKVSAVEVIFTVLHAGGK 104 (635)
T ss_pred -------CCCCCceEEEEEeeccCcc
Confidence 1111223567777776654
No 57
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=95.09 E-value=0.01 Score=72.59 Aligned_cols=85 Identities=25% Similarity=0.308 Sum_probs=59.2
Q ss_pred CcccCChhHHHhhhcCCcccC-----HHHHHHHHHHhhcc---cC-CceEEEEEEeCCeeeEEEEeCCCCcCccchhhhH
Q 041466 11 TIRPINKGVVHRICAGQVIKD-----LSSAVKELVENSLD---AG-ATSIEIALKEYGEEWFQVVDNGCGISPNNFKVRA 81 (824)
Q Consensus 11 ~I~~L~~~~v~~IaageVi~~-----p~svVKELvENSlD---Ag-At~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l~ 81 (824)
.|+.|.---.=|-+-|-.|-+ +..+|.|+|.||+| || |+.|.|.|...| +|+|.|||.||+-+--+
T Consensus 104 ~I~vLeGLEaVRkRPGMYIGst~~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~Dg--sItV~DnGRGIPvd~h~--- 178 (903)
T PTZ00109 104 DIVVLEGLEAVRKRPGMYIGNTDEKGLHQLLFEILDNSVDEYLAGECNKITVVLHKDG--SVEISDNGRGIPCDVSE--- 178 (903)
T ss_pred hCeehhccHHHhcCCCceeCCCCCCcceEEEEEEeeccchhhccCCCcEEEEEEcCCC--eEEEEeCCccccccccc---
Confidence 356665555555556666643 45689999999999 34 899999998766 69999999999975432
Q ss_pred HHHHHHHHhhCCceEEEEEEcCCC
Q 041466 82 VFLCQAYALIAKGVRFVCTNTTGK 105 (824)
Q Consensus 82 ~~~l~~~al~~p~v~f~l~~~~~~ 105 (824)
.....-+++-|+.-|.+|+
T Consensus 179 -----k~g~s~~E~VlT~LhAGGK 197 (903)
T PTZ00109 179 -----KTGKSGLETVLTVLHSGGK 197 (903)
T ss_pred -----cCCCcceeEEEEEeccCcc
Confidence 2223345667777776544
No 58
>PRK13560 hypothetical protein; Provisional
Probab=95.01 E-value=0.088 Score=64.88 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcccC-----CceEEEEEEeC--CeeeEEEEeCCCCcCccc----hhhhHHHHHHHHHhhCCceEEEEEE
Q 041466 33 SSAVKELVENSLDAG-----ATSIEIALKEY--GEEWFQVVDNGCGISPNN----FKVRAVFLCQAYALIAKGVRFVCTN 101 (824)
Q Consensus 33 ~svVKELvENSlDAg-----At~I~V~i~~~--G~~~I~V~DnG~GI~~~d----~~~l~~~~l~~~al~~p~v~f~l~~ 101 (824)
..|+-+||.||+++. +..|.|.+... |.-.|.|.|||+||+++- +..|++.+++.++-.| +-++.+..
T Consensus 713 ~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~~~~gLGLai~~~iv~~~-gG~I~v~S 791 (807)
T PRK13560 713 GLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAGFDFRAAETLGLQLVCALVKQL-DGEIALDS 791 (807)
T ss_pred HHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCccccccccCCccHHHHHHHHHHc-CCEEEEEc
Confidence 348899999999963 35788877653 455799999999999863 3457778888888776 54666665
Q ss_pred c
Q 041466 102 T 102 (824)
Q Consensus 102 ~ 102 (824)
.
T Consensus 792 ~ 792 (807)
T PRK13560 792 R 792 (807)
T ss_pred C
Confidence 3
No 59
>PRK10337 sensor protein QseC; Provisional
Probab=94.98 E-value=0.071 Score=61.23 Aligned_cols=46 Identities=28% Similarity=0.518 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhcccCCc--eEEEEEEeCCeeeEEEEeCCCCcCccchhhh
Q 041466 32 LSSAVKELVENSLDAGAT--SIEIALKEYGEEWFQVVDNGCGISPNNFKVR 80 (824)
Q Consensus 32 p~svVKELvENSlDAgAt--~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l 80 (824)
+..++.+||+||+..+.. .|.|.+.. ..|+|.|||.||++++++.+
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~~---~~i~i~D~G~Gi~~~~~~~i 400 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLNA---RNFTVRDNGPGVTPEALARI 400 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEe---eEEEEEECCCCCCHHHHHHh
Confidence 455899999999998765 46665543 36999999999998877643
No 60
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=94.96 E-value=0.084 Score=66.51 Aligned_cols=51 Identities=24% Similarity=0.349 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHhhcccC-CceEEEEEEe-CCeeeEEEEeCCCCcCccchhhhH
Q 041466 31 DLSSAVKELVENSLDAG-ATSIEIALKE-YGEEWFQVVDNGCGISPNNFKVRA 81 (824)
Q Consensus 31 ~p~svVKELvENSlDAg-At~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l~ 81 (824)
++..|+-.||+||++.. ...|.|++.. ++.-.|.|.|||.||++++++.++
T Consensus 513 ~l~~il~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 565 (921)
T PRK15347 513 RLRQILVNLLGNAVKFTETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIF 565 (921)
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHh
Confidence 36789999999999974 3468887764 345579999999999999887443
No 61
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=94.91 E-value=0.14 Score=61.22 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhccc-CCceEEEEEEeC-CeeeEEEEeCCCCcCccch--hhhHHHHHHHHHhhCCceEEEEEEcCCCc
Q 041466 32 LSSAVKELVENSLDA-GATSIEIALKEY-GEEWFQVVDNGCGISPNNF--KVRAVFLCQAYALIAKGVRFVCTNTTGKN 106 (824)
Q Consensus 32 p~svVKELvENSlDA-gAt~I~V~i~~~-G~~~I~V~DnG~GI~~~d~--~~l~~~~l~~~al~~p~v~f~l~~~~~~~ 106 (824)
...++.|+|.||+.. +|+.|.|.+... |.-.|.|.|||.||+++.. ..+++.+++..+-.+ +-.+.+.+..|+|
T Consensus 470 l~~il~ell~NA~kha~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~~~~~~glGL~i~~~~~~~l-gG~l~i~s~~~~G 547 (569)
T PRK10600 470 LLQIAREALSNALKHAQASEVVVTVAQNQNQVKLSVQDNGCGVPENAERSNHYGLIIMRDRAQSL-RGDCRVRRRESGG 547 (569)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCccccCCCCccHHHHHHHHHHc-CCEEEEEECCCCC
Confidence 457899999999984 578899988653 4557999999999998653 245667777777665 4477777665554
No 62
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=94.82 E-value=0.12 Score=60.89 Aligned_cols=75 Identities=23% Similarity=0.283 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHhhcccCCc--eEEEEEEe-CCe-eeEEEEeCCCCcCccchhh--------------hHHHHHHHHHhhC
Q 041466 31 DLSSAVKELVENSLDAGAT--SIEIALKE-YGE-EWFQVVDNGCGISPNNFKV--------------RAVFLCQAYALIA 92 (824)
Q Consensus 31 ~p~svVKELvENSlDAgAt--~I~V~i~~-~G~-~~I~V~DnG~GI~~~d~~~--------------l~~~~l~~~al~~ 92 (824)
.+..++.+|+.||+.+... .|.|.+.. .+. -.|+|.|||+||+++.++. +++.+++..+-.|
T Consensus 500 ~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~~g~glGL~~~~~~~~~~ 579 (607)
T PRK11360 500 LLKQVLLNILINAVQAISARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKAKGTGLGLALSQRIINAH 579 (607)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCCCCCchhHHHHHHHHHHc
Confidence 3678999999999998554 56666643 232 5799999999999987643 3345566655554
Q ss_pred CceEEEEEEcCCCc
Q 041466 93 KGVRFVCTNTTGKN 106 (824)
Q Consensus 93 p~v~f~l~~~~~~~ 106 (824)
-+ ++.+....|+|
T Consensus 580 ~G-~i~~~s~~~~G 592 (607)
T PRK11360 580 GG-DIEVESEPGVG 592 (607)
T ss_pred CC-EEEEEEcCCCc
Confidence 33 56665544433
No 63
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=94.75 E-value=0.11 Score=65.11 Aligned_cols=73 Identities=19% Similarity=0.179 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHhhcccC--CceEEEEEEe----------------CCeeeEEEEeCCCCcCccchhhhHH----------
Q 041466 31 DLSSAVKELVENSLDAG--ATSIEIALKE----------------YGEEWFQVVDNGCGISPNNFKVRAV---------- 82 (824)
Q Consensus 31 ~p~svVKELvENSlDAg--At~I~V~i~~----------------~G~~~I~V~DnG~GI~~~d~~~l~~---------- 82 (824)
.+..|+..||.||+++. ...|.|.+.. ++.-.|.|.|||.||++++++.++.
T Consensus 560 ~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~~G~ 639 (828)
T PRK13837 560 ELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRAGGT 639 (828)
T ss_pred HHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCCCCC
Confidence 36789999999999973 4677777754 3445799999999999998764432
Q ss_pred ----HHHHHHHhhCCceEEEEEEcCC
Q 041466 83 ----FLCQAYALIAKGVRFVCTNTTG 104 (824)
Q Consensus 83 ----~~l~~~al~~p~v~f~l~~~~~ 104 (824)
.++++++-.| +-++.+.+..|
T Consensus 640 GLGL~i~~~iv~~~-gG~i~v~s~~g 664 (828)
T PRK13837 640 GLGLATVHGIVSAH-AGYIDVQSTVG 664 (828)
T ss_pred cchHHHHHHHHHHC-CCEEEEEecCC
Confidence 5555555544 33555554433
No 64
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=94.53 E-value=0.023 Score=67.90 Aligned_cols=44 Identities=32% Similarity=0.559 Sum_probs=36.9
Q ss_pred ccCHHHHHHHHHHhhccc------C-CceEEEEEEeCCeeeEEEEeCCCCcCcc
Q 041466 29 IKDLSSAVKELVENSLDA------G-ATSIEIALKEYGEEWFQVVDNGCGISPN 75 (824)
Q Consensus 29 i~~p~svVKELvENSlDA------g-At~I~V~i~~~G~~~I~V~DnG~GI~~~ 75 (824)
+.-+.-++.|+|.||+|= | |+.|.|.|. .| +|.|.|||.||+-+
T Consensus 43 ~~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~-dg--sisV~dnGrGIPv~ 93 (602)
T PHA02569 43 VPGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK-NN--QVTVSDNGRGIPQA 93 (602)
T ss_pred cccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc-CC--EEEEEECCCcccCC
Confidence 345567789999999993 5 999999998 55 69999999999864
No 65
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=94.46 E-value=0.16 Score=62.42 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHhhcccC--CceEEEEEEe-CCeeeEEEEeCCCCcCccchhhhH
Q 041466 31 DLSSAVKELVENSLDAG--ATSIEIALKE-YGEEWFQVVDNGCGISPNNFKVRA 81 (824)
Q Consensus 31 ~p~svVKELvENSlDAg--At~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l~ 81 (824)
.+..++..||+||+++. ...|.|.+.. ++.-.|.|.|||.||++++++.++
T Consensus 597 ~L~~il~NLI~NAik~s~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IF 650 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSPEDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLF 650 (703)
T ss_pred HHHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHh
Confidence 35788999999999985 3458887764 445579999999999998876443
No 66
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=94.39 E-value=0.12 Score=57.06 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHhhcccC---CceEEEEEEeC------C-----eeeEEEEeCCCCcCccchhhhHH--------------
Q 041466 31 DLSSAVKELVENSLDAG---ATSIEIALKEY------G-----EEWFQVVDNGCGISPNNFKVRAV-------------- 82 (824)
Q Consensus 31 ~p~svVKELvENSlDAg---At~I~V~i~~~------G-----~~~I~V~DnG~GI~~~d~~~l~~-------------- 82 (824)
.+..|+..|+.||+++. ...|.|.+... | .-.|+|.|||.||++++.+.++.
T Consensus 237 ~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~~g~GlGL 316 (348)
T PRK11073 237 QIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGREGGTGLGL 316 (348)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCCCCccCCH
Confidence 36889999999999874 34566654321 1 23699999999999987664432
Q ss_pred HHHHHHHhhCCceEEEEEEcC
Q 041466 83 FLCQAYALIAKGVRFVCTNTT 103 (824)
Q Consensus 83 ~~l~~~al~~p~v~f~l~~~~ 103 (824)
.++++++-.| +-.+.+....
T Consensus 317 ~i~~~iv~~~-gG~i~~~s~~ 336 (348)
T PRK11073 317 SIARNLIDQH-SGKIEFTSWP 336 (348)
T ss_pred HHHHHHHHHc-CCeEEEEecC
Confidence 6666666655 4455555543
No 67
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=94.29 E-value=0.14 Score=64.33 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHhhcccCC-ceEEEEEEe----CCeeeEEEEeCCCCcCccchhhh
Q 041466 31 DLSSAVKELVENSLDAGA-TSIEIALKE----YGEEWFQVVDNGCGISPNNFKVR 80 (824)
Q Consensus 31 ~p~svVKELvENSlDAgA-t~I~V~i~~----~G~~~I~V~DnG~GI~~~d~~~l 80 (824)
++..|+-.||.||+++.. ..|.|.+.. ++.-.|+|.|||+||++++++.+
T Consensus 565 ~L~QVL~NLL~NAik~t~~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~I 619 (894)
T PRK10618 565 ALRKILLLLLNYAITTTAYGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNL 619 (894)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHh
Confidence 467899999999999743 356666653 23457999999999999988744
No 68
>PRK10547 chemotaxis protein CheA; Provisional
Probab=94.28 E-value=0.33 Score=58.94 Aligned_cols=45 Identities=27% Similarity=0.479 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcccCC--------------ceEEEEEEe-CCeeeEEEEeCCCCcCccch
Q 041466 33 SSAVKELVENSLDAGA--------------TSIEIALKE-YGEEWFQVVDNGCGISPNNF 77 (824)
Q Consensus 33 ~svVKELvENSlDAgA--------------t~I~V~i~~-~G~~~I~V~DnG~GI~~~d~ 77 (824)
...+..||.||+|.|- ..|.|++.. ++.-.|+|.|||.||+++.+
T Consensus 387 ~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i 446 (670)
T PRK10547 387 IDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERI 446 (670)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHH
Confidence 3445689999999872 358887764 45557999999999998765
No 69
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=94.23 E-value=0.25 Score=53.46 Aligned_cols=48 Identities=31% Similarity=0.495 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhcccCC--ceEEEEEEe-CCeeeEEEEeCCCCcCccchhh
Q 041466 32 LSSAVKELVENSLDAGA--TSIEIALKE-YGEEWFQVVDNGCGISPNNFKV 79 (824)
Q Consensus 32 p~svVKELvENSlDAgA--t~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~ 79 (824)
+..|+.+|+.||++++. ..|.|.+.. ++.-.|.|.|||.||+++.++.
T Consensus 230 l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~ 280 (333)
T TIGR02966 230 LRSAFSNLVSNAIKYTPEGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPR 280 (333)
T ss_pred HHHHHHHHHHHhheeCCCCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhh
Confidence 56799999999999864 467776654 2345799999999999887653
No 70
>PRK10490 sensor protein KdpD; Provisional
Probab=94.20 E-value=0.17 Score=63.92 Aligned_cols=73 Identities=22% Similarity=0.293 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhcccCC--ceEEEEEEe-CCeeeEEEEeCCCCcCccchhhhH------------------HHHHHHHHh
Q 041466 32 LSSAVKELVENSLDAGA--TSIEIALKE-YGEEWFQVVDNGCGISPNNFKVRA------------------VFLCQAYAL 90 (824)
Q Consensus 32 p~svVKELvENSlDAgA--t~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l~------------------~~~l~~~al 90 (824)
+..|+..||+||+.+.. +.|.|.+.. ++.-.|+|.|||.||++++++.++ +.+++.++-
T Consensus 779 L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~~~~G~GLGL~Ivk~ive 858 (895)
T PRK10490 779 FERVLINLLENAVKYAGAQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFARGNKESAIPGVGLGLAICRAIVE 858 (895)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCccCCCCCCCCCccHHHHHHHHHHH
Confidence 56899999999999853 457777664 445579999999999998765433 355666666
Q ss_pred hCCceEEEEEEcCCC
Q 041466 91 IAKGVRFVCTNTTGK 105 (824)
Q Consensus 91 ~~p~v~f~l~~~~~~ 105 (824)
.| +-++.+.+..+.
T Consensus 859 ~h-GG~I~v~s~~~~ 872 (895)
T PRK10490 859 VH-GGTIWAENRPEG 872 (895)
T ss_pred Hc-CCEEEEEECCCC
Confidence 55 445666655433
No 71
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=93.87 E-value=0.21 Score=62.00 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHhhcccCC-ceEEEEEEe--CCeeeEEEEeCCCCcCccchhhhH
Q 041466 31 DLSSAVKELVENSLDAGA-TSIEIALKE--YGEEWFQVVDNGCGISPNNFKVRA 81 (824)
Q Consensus 31 ~p~svVKELvENSlDAgA-t~I~V~i~~--~G~~~I~V~DnG~GI~~~d~~~l~ 81 (824)
++..|+-.||.||+++.. ..|.|.+.. ++.-.|.|.|||.||++++++.++
T Consensus 398 ~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF 451 (779)
T PRK11091 398 RLRQILWNLISNAVKFTQQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIF 451 (779)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHH
Confidence 466899999999999863 446666654 444579999999999999877444
No 72
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=93.84 E-value=0.21 Score=63.10 Aligned_cols=50 Identities=24% Similarity=0.391 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhcccC-CceEEEEEEeC-CeeeEEEEeCCCCcCccchhhhH
Q 041466 32 LSSAVKELVENSLDAG-ATSIEIALKEY-GEEWFQVVDNGCGISPNNFKVRA 81 (824)
Q Consensus 32 p~svVKELvENSlDAg-At~I~V~i~~~-G~~~I~V~DnG~GI~~~d~~~l~ 81 (824)
+..|+..||.||+.+. ...|.|.+... +.-.|.|.|||+||++++++.++
T Consensus 562 l~qil~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 613 (914)
T PRK11466 562 IRQVITNLLSNALRFTDEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIF 613 (914)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHh
Confidence 5678999999999975 45688877643 34469999999999999887443
No 73
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=93.73 E-value=0.31 Score=57.75 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhccc-CCceEEEEEEe--CCeeeEEEEeCCCCcCccchh--hhHHHHHHHHHhhCCceEEEEEEcCCCc
Q 041466 32 LSSAVKELVENSLDA-GATSIEIALKE--YGEEWFQVVDNGCGISPNNFK--VRAVFLCQAYALIAKGVRFVCTNTTGKN 106 (824)
Q Consensus 32 p~svVKELvENSlDA-gAt~I~V~i~~--~G~~~I~V~DnG~GI~~~d~~--~l~~~~l~~~al~~p~v~f~l~~~~~~~ 106 (824)
...++.+|+.||+.. ++..|.|.+.. .|.-.|+|.|||+||++++.. .+++.+++..+-.|.+ .+.+....+.|
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~~glGL~i~~~iv~~~~G-~i~v~s~~~~G 550 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVTNPDGEHTVSIRDDGIGIGELKEPEGHYGLNIMQERAERLGG-TLTISQPPGGG 550 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCEEEEEEEECCcCcCCCCCCCCCcCHHHHHHHHHHcCC-EEEEEECCCCc
Confidence 446899999999984 55678888764 355579999999999987654 4556788888877644 67776655443
Q ss_pred eeeEEEEcC
Q 041466 107 VKSVVLKTQ 115 (824)
Q Consensus 107 ~~~~~~~t~ 115 (824)
. .+.+..|
T Consensus 551 t-~~~i~lP 558 (565)
T PRK10935 551 T-TVSLTFP 558 (565)
T ss_pred E-EEEEEEC
Confidence 2 3344444
No 74
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=93.70 E-value=0.1 Score=49.94 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=35.1
Q ss_pred ccCHHHHHHHHHHhhcccC-----CceEEEEEEeC-CeeeEEEEeCCCCcC
Q 041466 29 IKDLSSAVKELVENSLDAG-----ATSIEIALKEY-GEEWFQVVDNGCGIS 73 (824)
Q Consensus 29 i~~p~svVKELvENSlDAg-----At~I~V~i~~~-G~~~I~V~DnG~GI~ 73 (824)
+..+.-++.||+.||+..| ...|.|.+... +.-.|.|.|||.||+
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 37 LTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 3456789999999999754 35788887643 344699999999997
No 75
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=93.53 E-value=0.25 Score=62.26 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHhhcccCC-ceEE--EEEEeC--C--eeeEEEEeCCCCcCccchhhhH
Q 041466 31 DLSSAVKELVENSLDAGA-TSIE--IALKEY--G--EEWFQVVDNGCGISPNNFKVRA 81 (824)
Q Consensus 31 ~p~svVKELvENSlDAgA-t~I~--V~i~~~--G--~~~I~V~DnG~GI~~~d~~~l~ 81 (824)
++..|+..||.||+.+.. ..|. |.+... + .-.|.|.|||.||++++++.++
T Consensus 408 ~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 465 (919)
T PRK11107 408 RLQQIITNLVGNAIKFTESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLF 465 (919)
T ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHh
Confidence 356899999999999843 2344 443321 1 2359999999999999887443
No 76
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=93.50 E-value=0.11 Score=66.94 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=48.3
Q ss_pred cccCHHHHHHHHHHhhccc--------CCceEEEEEEeC-CeeeEEEEeCCCCcCccchhhhHHHHHHHHHhhCCceEEE
Q 041466 28 VIKDLSSAVKELVENSLDA--------GATSIEIALKEY-GEEWFQVVDNGCGISPNNFKVRAVFLCQAYALIAKGVRFV 98 (824)
Q Consensus 28 Vi~~p~svVKELvENSlDA--------gAt~I~V~i~~~-G~~~I~V~DnG~GI~~~d~~~l~~~~l~~~al~~p~v~f~ 98 (824)
.|.-+.-++-|+|.||+|= .++.|.|.|... | .|.|.|||.||+-+--+ ..-+--|++-|.
T Consensus 54 ~vpGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~g--~IsV~dnGrGIPv~~h~--------~~~~~~pElIft 123 (1388)
T PTZ00108 54 YVPGLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEENG--EISVYNDGEGIPVQIHK--------EHKIYVPEMIFG 123 (1388)
T ss_pred ccchhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccCC--eEEEEecCCcccCCCCC--------CCCCccceEEEE
Confidence 4567789999999999993 379999999864 5 69999999999965322 122233556665
Q ss_pred EEEcCC
Q 041466 99 CTNTTG 104 (824)
Q Consensus 99 l~~~~~ 104 (824)
.-+.+|
T Consensus 124 ~L~aGg 129 (1388)
T PTZ00108 124 HLLTSS 129 (1388)
T ss_pred Eeeccc
Confidence 555543
No 77
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=93.45 E-value=0.12 Score=59.55 Aligned_cols=83 Identities=23% Similarity=0.299 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhcc-cCCceEEEEEEeC-CeeeEEEEeCCCCcCccchh--hhHHHHHHHHHh-hCCceEEEEEEcCCCc
Q 041466 32 LSSAVKELVENSLD-AGATSIEIALKEY-GEEWFQVVDNGCGISPNNFK--VRAVFLCQAYAL-IAKGVRFVCTNTTGKN 106 (824)
Q Consensus 32 p~svVKELvENSlD-AgAt~I~V~i~~~-G~~~I~V~DnG~GI~~~d~~--~l~~~~l~~~al-~~p~v~f~l~~~~~~~ 106 (824)
.-.+|.|-+-|++. |.|++|.|.+..+ |--.+.|.|||+||+...=. ..++.+++.=|- .+-+.+|.=.-.+|.
T Consensus 482 lLqIvREAlsNa~KHa~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~~e~~gHyGL~IM~ERA~~L~~~L~i~~~~~gGT- 560 (574)
T COG3850 482 LLQIVREALSNAIKHAQASEIKVTVSQNDGQVTLTVEDNGVGIDEAAEPSGHYGLNIMRERAQRLGGQLRIRRREGGGT- 560 (574)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEecCCeEEEEEeeCCcCCCCccCCCCCcchHHHHHHHHHhcCeEEEeecCCCCe-
Confidence 34789999999996 7999999999876 66689999999999976411 234466654443 444555554433222
Q ss_pred eeeEEEEcCCC
Q 041466 107 VKSVVLKTQGS 117 (824)
Q Consensus 107 ~~~~~~~t~~~ 117 (824)
.+.+..++.
T Consensus 561 --~V~ltf~~~ 569 (574)
T COG3850 561 --EVSLTFPPE 569 (574)
T ss_pred --EEEEEeccc
Confidence 455555543
No 78
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=93.22 E-value=0.28 Score=62.23 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHhhcccCC-ceEEEEEE--eCCeeeEEEEeCCCCcCccchhhhH
Q 041466 31 DLSSAVKELVENSLDAGA-TSIEIALK--EYGEEWFQVVDNGCGISPNNFKVRA 81 (824)
Q Consensus 31 ~p~svVKELvENSlDAgA-t~I~V~i~--~~G~~~I~V~DnG~GI~~~d~~~l~ 81 (824)
++..|+-.||.||+.... ..|.|.+. +++.-.|.|.|||+||+++++..++
T Consensus 579 ~l~~il~nLi~NAik~~~~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 632 (968)
T TIGR02956 579 RIRQVLINLVGNAIKFTDRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLF 632 (968)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHH
Confidence 456799999999999853 45666665 3331469999999999999887443
No 79
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=93.17 E-value=0.32 Score=52.71 Aligned_cols=79 Identities=25% Similarity=0.247 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhcccCC------ceEEEE------EEeCCe-----eeEEEEeCCCCcCccchhhhHH------------
Q 041466 32 LSSAVKELVENSLDAGA------TSIEIA------LKEYGE-----EWFQVVDNGCGISPNNFKVRAV------------ 82 (824)
Q Consensus 32 p~svVKELvENSlDAgA------t~I~V~------i~~~G~-----~~I~V~DnG~GI~~~d~~~l~~------------ 82 (824)
+.+|+-.||-||+.|.+ -.|.++ +.-.|. -.|+|.|||.||+++=.+.++.
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~~GsGL 321 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGREGGTGL 321 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCCCCccc
Confidence 56889999999999998 233332 222222 1489999999999987777766
Q ss_pred --HHHHHHHhhCCceEEEEEEcCCCceeeEE
Q 041466 83 --FLCQAYALIAKGVRFVCTNTTGKNVKSVV 111 (824)
Q Consensus 83 --~~l~~~al~~p~v~f~l~~~~~~~~~~~~ 111 (824)
.+++.+.-.|-+ .+.|....|++.+++.
T Consensus 322 GLala~~li~qH~G-~Ie~~S~Pg~T~Frvl 351 (363)
T COG3852 322 GLALAQNLIDQHGG-KIEFDSWPGRTVFRVL 351 (363)
T ss_pred cHHHHHHHHHhcCC-EEEEeccCCceEEEEE
Confidence 777887777755 4566665666544433
No 80
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=92.94 E-value=0.41 Score=54.64 Aligned_cols=82 Identities=20% Similarity=0.258 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHhhcc--------cCCceEEEEEEeCCeeeEEEEeCCCCcCc--cchhhhHHHHH-HHHHhhCC---ceE
Q 041466 31 DLSSAVKELVENSLD--------AGATSIEIALKEYGEEWFQVVDNGCGISP--NNFKVRAVFLC-QAYALIAK---GVR 96 (824)
Q Consensus 31 ~p~svVKELvENSlD--------AgAt~I~V~i~~~G~~~I~V~DnG~GI~~--~d~~~l~~~~l-~~~al~~p---~v~ 96 (824)
=|+=++.=||||||. .|+-.|.|+..++++ .|+|.|||.||.+ .|-..+++..| +|+=+.|+ +.+
T Consensus 456 iP~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l-~i~VeDng~li~p~~~~g~giGL~nv~~RLk~lyG~~~gl~ 534 (557)
T COG3275 456 IPSFILQPLVENAIKHGISQLKDTGRVTISVEKEDADL-RIEVEDNGGLIQPDEEDGTGIGLANVHKRLKLLYGDDEGLH 534 (557)
T ss_pred CchhhhhHHHHHHHHhcccchhcCCceEEEEEEeCCeE-EEEEecCCCCcCCCCCCCCChHHHHHHHHHHHhcCccccce
Confidence 366778899999985 456667776666554 7999999999998 44556777444 56666666 566
Q ss_pred EEEEEcCCCceeeEEEEcCC
Q 041466 97 FVCTNTTGKNVKSVVLKTQG 116 (824)
Q Consensus 97 f~l~~~~~~~~~~~~~~t~~ 116 (824)
+...-..|. +++|..|.
T Consensus 535 i~~~~q~gT---ri~f~lp~ 551 (557)
T COG3275 535 IESLEQAGT---RIIFRLPL 551 (557)
T ss_pred EEeccCCCc---EEEEEecC
Confidence 655443222 45555553
No 81
>PRK09835 sensor kinase CusS; Provisional
Probab=92.92 E-value=0.48 Score=54.74 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHhhcccCC--ceEEEEEEe-CCeeeEEEEeCCCCcCccchhhh--------------------HHHHHHH
Q 041466 31 DLSSAVKELVENSLDAGA--TSIEIALKE-YGEEWFQVVDNGCGISPNNFKVR--------------------AVFLCQA 87 (824)
Q Consensus 31 ~p~svVKELvENSlDAgA--t~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l--------------------~~~~l~~ 87 (824)
.+..|+.+||.||+..+. ..|.|.+.. ++.-.|.|.|||.||++++++.+ ++.++++
T Consensus 375 ~l~~vl~nll~Na~~~~~~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~ 454 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPAGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKS 454 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHHHH
Confidence 367899999999999853 458887754 34447999999999999887633 3355555
Q ss_pred HHhhCCceEEEEEEc
Q 041466 88 YALIAKGVRFVCTNT 102 (824)
Q Consensus 88 ~al~~p~v~f~l~~~ 102 (824)
.+-.| +-.+.+.+.
T Consensus 455 i~~~~-~g~i~~~s~ 468 (482)
T PRK09835 455 IVVAH-KGTVAVTSD 468 (482)
T ss_pred HHHHC-CCEEEEEEC
Confidence 55554 335666654
No 82
>PRK13557 histidine kinase; Provisional
Probab=92.65 E-value=0.35 Score=56.48 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhcccCC--ceEEEEEE----------------eCCeeeEEEEeCCCCcCccchhh
Q 041466 32 LSSAVKELVENSLDAGA--TSIEIALK----------------EYGEEWFQVVDNGCGISPNNFKV 79 (824)
Q Consensus 32 p~svVKELvENSlDAgA--t~I~V~i~----------------~~G~~~I~V~DnG~GI~~~d~~~ 79 (824)
+..|+-.|+.||+++.. ..|.|... .++.-.|.|.|||.||++++.+.
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 343 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILAR 343 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHh
Confidence 56789999999999854 44555443 22334699999999999887653
No 83
>PRK13559 hypothetical protein; Provisional
Probab=92.64 E-value=0.58 Score=52.04 Aligned_cols=72 Identities=18% Similarity=0.096 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHhhcccCC-----ceEEEEE--Ee-CCeeeEEEEeCCCCcCccchh-hhHHHHHHHHHhhCCceEEEEEE
Q 041466 31 DLSSAVKELVENSLDAGA-----TSIEIAL--KE-YGEEWFQVVDNGCGISPNNFK-VRAVFLCQAYALIAKGVRFVCTN 101 (824)
Q Consensus 31 ~p~svVKELvENSlDAgA-----t~I~V~i--~~-~G~~~I~V~DnG~GI~~~d~~-~l~~~~l~~~al~~p~v~f~l~~ 101 (824)
.+..|+-||+.||+..|+ .+|.|.+ .. ++.-.|.|.|||.|+.++.-. .+++.++++.+-...+-++.+..
T Consensus 267 ~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~~~~~g~Gl~i~~~~v~~~~gG~i~~~~ 346 (361)
T PRK13559 267 PLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPKLAKRGFGTVIIGAMVESQLNGQLEKTW 346 (361)
T ss_pred HHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCCCCCCCcHHHHHHHHHHHHcCCeEEEEE
Confidence 356799999999999864 4788888 32 555679999999999876432 35557777777653455666665
Q ss_pred c
Q 041466 102 T 102 (824)
Q Consensus 102 ~ 102 (824)
.
T Consensus 347 ~ 347 (361)
T PRK13559 347 S 347 (361)
T ss_pred c
Confidence 4
No 84
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.1 Score=61.63 Aligned_cols=47 Identities=23% Similarity=0.380 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHhhcccC------------------CceEEEEEEeCCeeeEEEEeCCCCcCccchh
Q 041466 31 DLSSAVKELVENSLDAG------------------ATSIEIALKEYGEEWFQVVDNGCGISPNNFK 78 (824)
Q Consensus 31 ~p~svVKELvENSlDAg------------------At~I~V~i~~~G~~~I~V~DnG~GI~~~d~~ 78 (824)
.+---++|||-||-||= .-+|+|.+... ...+.|+|||.||+++|+.
T Consensus 27 nKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~-~kTLtI~DNGIGMT~~Ev~ 91 (623)
T COG0326 27 NKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKD-NKTLTISDNGIGMTKDEVI 91 (623)
T ss_pred CcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEccc-CCEEEEEeCCCCCCHHHHH
Confidence 34556999999999981 24566665543 3479999999999999975
No 85
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=92.43 E-value=0.45 Score=60.36 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhcccCC-ceEEEEEEe-CCeeeEEEEeCCCCcCccchhhh
Q 041466 32 LSSAVKELVENSLDAGA-TSIEIALKE-YGEEWFQVVDNGCGISPNNFKVR 80 (824)
Q Consensus 32 p~svVKELvENSlDAgA-t~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l 80 (824)
+..|+..||.||+.+.. ..|.|.+.. ++.-.|+|.|||.||++++++.+
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~l 613 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRL 613 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHH
Confidence 56899999999999743 346666553 44557999999999999988744
No 86
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=92.31 E-value=0.16 Score=50.40 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=38.2
Q ss_pred CcccCHHHHHHHHHHhhcccCC-----ceEEEEEEe-CCeeeEEEEeCCCCcCccch
Q 041466 27 QVIKDLSSAVKELVENSLDAGA-----TSIEIALKE-YGEEWFQVVDNGCGISPNNF 77 (824)
Q Consensus 27 eVi~~p~svVKELvENSlDAgA-----t~I~V~i~~-~G~~~I~V~DnG~GI~~~d~ 77 (824)
+.+.+..-+|.|++.||+.-|- ..|.|.+.. ++.-.|.|.|+|.||+++.+
T Consensus 38 ~~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~ 94 (161)
T PRK04069 38 DDIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETL 94 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHh
Confidence 3445677899999999998764 357776653 45557999999999986544
No 87
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=92.01 E-value=0.44 Score=62.07 Aligned_cols=50 Identities=16% Similarity=0.314 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHhhcccCCc-eEEEEEE-----eC-CeeeEEEEeCCCCcCccchhhh
Q 041466 31 DLSSAVKELVENSLDAGAT-SIEIALK-----EY-GEEWFQVVDNGCGISPNNFKVR 80 (824)
Q Consensus 31 ~p~svVKELvENSlDAgAt-~I~V~i~-----~~-G~~~I~V~DnG~GI~~~d~~~l 80 (824)
.+..|+..||.||+++... .|.|.+. .+ +.-.|+|.|||.||++++++.+
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~i 884 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHh
Confidence 4668999999999998543 3444332 22 2335899999999999987644
No 88
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=91.96 E-value=0.69 Score=48.59 Aligned_cols=72 Identities=24% Similarity=0.185 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHhhcccCCc-----eEEEEEEe--CC-eeeEEEEeCCCCcCcc---chhhhHHHHHHHHHhhCCceEEEE
Q 041466 31 DLSSAVKELVENSLDAGAT-----SIEIALKE--YG-EEWFQVVDNGCGISPN---NFKVRAVFLCQAYALIAKGVRFVC 99 (824)
Q Consensus 31 ~p~svVKELvENSlDAgAt-----~I~V~i~~--~G-~~~I~V~DnG~GI~~~---d~~~l~~~~l~~~al~~p~v~f~l 99 (824)
.+.=+|-||+-||+.-|+. .|.|.+.. +| ...+.|.|||.|++.+ .-..++..+|++++-..-+-.+..
T Consensus 122 ~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~~~~~~~g~G~~Lv~~lv~~q~~g~~~~ 201 (221)
T COG3920 122 PLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVEAPLSRGGFGLQLVERLVPEQLGGELED 201 (221)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHcCCeEEE
Confidence 3557899999999987765 56666654 33 3589999999999975 235778899999883122334444
Q ss_pred EEc
Q 041466 100 TNT 102 (824)
Q Consensus 100 ~~~ 102 (824)
+..
T Consensus 202 ~~~ 204 (221)
T COG3920 202 ERP 204 (221)
T ss_pred EcC
Confidence 443
No 89
>PLN03128 DNA topoisomerase 2; Provisional
Probab=91.71 E-value=0.22 Score=63.43 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=39.0
Q ss_pred cccCHHHHHHHHHHhhcccC-----CceEEEEEEe-CCeeeEEEEeCCCCcCcc
Q 041466 28 VIKDLSSAVKELVENSLDAG-----ATSIEIALKE-YGEEWFQVVDNGCGISPN 75 (824)
Q Consensus 28 Vi~~p~svVKELvENSlDAg-----At~I~V~i~~-~G~~~I~V~DnG~GI~~~ 75 (824)
.|.-+.-++-|+|.||+|=. ++.|.|.|.. .| +|.|.|||.||+-+
T Consensus 49 ~vpGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dg--sIsV~DnGrGIPv~ 100 (1135)
T PLN03128 49 YVPGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQN--TISVYNNGKGIPVE 100 (1135)
T ss_pred cchhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCC--eEEEEecCccccCC
Confidence 45677889999999999943 5999999986 56 69999999999965
No 90
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=91.22 E-value=0.95 Score=55.02 Aligned_cols=80 Identities=21% Similarity=0.288 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcccCCce--EEEEEEeCC-eeeEEEEeCCCCcCccchhhhHH------------------HHHHHHHhhC
Q 041466 34 SAVKELVENSLDAGATS--IEIALKEYG-EEWFQVVDNGCGISPNNFKVRAV------------------FLCQAYALIA 92 (824)
Q Consensus 34 svVKELvENSlDAgAt~--I~V~i~~~G-~~~I~V~DnG~GI~~~d~~~l~~------------------~~l~~~al~~ 92 (824)
.|+=.|+|||+--+... |.|.....+ .-.+.|.|||.||++++++.++- .+++.+--+|
T Consensus 778 QVLiNLleNA~Kyap~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~~~G~GLGLsIc~~iv~ah 857 (890)
T COG2205 778 QVLINLLENALKYAPPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRGNKESATRGVGLGLAICRGIVEAH 857 (890)
T ss_pred HHHHHHHHHHHhhCCCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCCCCCccccHHHHHHHHHHc
Confidence 68889999999876544 444444333 33699999999999999987766 6666666666
Q ss_pred CceEEEEEEcCCCceeeEEEEcC
Q 041466 93 KGVRFVCTNTTGKNVKSVVLKTQ 115 (824)
Q Consensus 93 p~v~f~l~~~~~~~~~~~~~~t~ 115 (824)
+-++...++.+.|. ..+|..|
T Consensus 858 -gG~I~a~~~~~gGa-~f~~~LP 878 (890)
T COG2205 858 -GGTISAENNPGGGA-IFVFTLP 878 (890)
T ss_pred -CCeEEEEEcCCCce-EEEEEee
Confidence 44677777554443 3444444
No 91
>PLN03237 DNA topoisomerase 2; Provisional
Probab=90.83 E-value=0.31 Score=62.88 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=38.4
Q ss_pred ccCHHHHHHHHHHhhcccC-----CceEEEEEE-eCCeeeEEEEeCCCCcCcc
Q 041466 29 IKDLSSAVKELVENSLDAG-----ATSIEIALK-EYGEEWFQVVDNGCGISPN 75 (824)
Q Consensus 29 i~~p~svVKELvENSlDAg-----At~I~V~i~-~~G~~~I~V~DnG~GI~~~ 75 (824)
+.-+.-++-|+|.||+|=. ++.|.|.|. +.| .|.|.|||.||+-+
T Consensus 75 vpGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~g--sIsV~DnGRGIPV~ 125 (1465)
T PLN03237 75 VPGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQN--LISVYNNGDGVPVE 125 (1465)
T ss_pred cchhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCCC--EEEEEecCccccCC
Confidence 5677899999999999943 699999998 445 69999999999965
No 92
>PRK03660 anti-sigma F factor; Provisional
Probab=90.52 E-value=0.4 Score=46.25 Aligned_cols=47 Identities=28% Similarity=0.319 Sum_probs=35.3
Q ss_pred cccCHHHHHHHHHHhhcccCC-----ceEEEEEEeC-CeeeEEEEeCCCCcCc
Q 041466 28 VIKDLSSAVKELVENSLDAGA-----TSIEIALKEY-GEEWFQVVDNGCGISP 74 (824)
Q Consensus 28 Vi~~p~svVKELvENSlDAgA-----t~I~V~i~~~-G~~~I~V~DnG~GI~~ 74 (824)
.+.++.-++.||+.|++.-|. ..|.|.+... +.-.|+|.|+|.||+.
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 346788899999999997542 3577776543 3346999999999974
No 93
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.50 E-value=0.38 Score=54.14 Aligned_cols=74 Identities=23% Similarity=0.327 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHhhcc-cCCceEEEEEEe-CCeeeEEEEeCCCCcCccchh-hhHHHHHHHHHhhCCceEEEEEEcCCC
Q 041466 31 DLSSAVKELVENSLD-AGATSIEIALKE-YGEEWFQVVDNGCGISPNNFK-VRAVFLCQAYALIAKGVRFVCTNTTGK 105 (824)
Q Consensus 31 ~p~svVKELvENSlD-AgAt~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~-~l~~~~l~~~al~~p~v~f~l~~~~~~ 105 (824)
.+.-+|.|.|-|++- |+||.|.|.+.. ++.-.++|.|||.|.+.+... ..++.-++.=|..- +-.|.+....|+
T Consensus 279 ~l~rivQEaltN~~rHa~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~~~~~GL~~mreRv~~l-gG~l~i~S~~g~ 355 (365)
T COG4585 279 ALFRIVQEALTNAIRHAQATEVRVTLERTDDELRLEVIDNGVGFDPDKEGGGFGLLGMRERVEAL-GGTLTIDSAPGQ 355 (365)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEEEEcCCEEEEEEEECCcCCCccccCCCcchhhHHHHHHHc-CCEEEEEecCCC
Confidence 345789999999996 799999999985 344589999999999988641 24443333222222 335555554433
No 94
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=90.41 E-value=0.45 Score=47.26 Aligned_cols=51 Identities=25% Similarity=0.267 Sum_probs=37.9
Q ss_pred CcccCHHHHHHHHHHhhcccCC-----ceEEEEEEe-CCeeeEEEEeCCCCcCccch
Q 041466 27 QVIKDLSSAVKELVENSLDAGA-----TSIEIALKE-YGEEWFQVVDNGCGISPNNF 77 (824)
Q Consensus 27 eVi~~p~svVKELvENSlDAgA-----t~I~V~i~~-~G~~~I~V~DnG~GI~~~d~ 77 (824)
+-+.+..-+|.||+-||+.-|= ..|.|.+.. ++.-.|.|.|+|.|++++.+
T Consensus 38 ~~~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~ 94 (159)
T TIGR01924 38 DDIEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTF 94 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhh
Confidence 4455677799999999998862 467776543 34457999999999986654
No 95
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.41 E-value=2.6 Score=46.68 Aligned_cols=84 Identities=14% Similarity=0.224 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhcccC--CceEEEEEEeCC-eeeEEEEeCCCCcCccchhhhHH--------------------HHHHHH
Q 041466 32 LSSAVKELVENSLDAG--ATSIEIALKEYG-EEWFQVVDNGCGISPNNFKVRAV--------------------FLCQAY 88 (824)
Q Consensus 32 p~svVKELvENSlDAg--At~I~V~i~~~G-~~~I~V~DnG~GI~~~d~~~l~~--------------------~~l~~~ 88 (824)
..+|+-.+|.||+.-+ -.+|+|.++.-+ .-.|+|.|.|-||+++|++.++- .+....
T Consensus 343 ~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakei 422 (459)
T COG5002 343 MTQVLDNIISNALKYSPDGGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEI 422 (459)
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHH
Confidence 5789999999999875 468888888644 34799999999999999988776 444555
Q ss_pred HhhCCceEEEEEEcCCCceeeEEEEcCCC
Q 041466 89 ALIAKGVRFVCTNTTGKNVKSVVLKTQGS 117 (824)
Q Consensus 89 al~~p~v~f~l~~~~~~~~~~~~~~t~~~ 117 (824)
.-+|-+--|.=+. .|++. ...|..|+.
T Consensus 423 V~~hgG~iWA~s~-~gkgt-t~~ftLPy~ 449 (459)
T COG5002 423 VQAHGGRIWAESE-EGKGT-TFSFTLPYS 449 (459)
T ss_pred HHHhCCeEEEecc-cCCce-EEEEEeccc
Confidence 5566665554444 23432 334555554
No 96
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=87.07 E-value=1 Score=42.11 Aligned_cols=50 Identities=28% Similarity=0.430 Sum_probs=38.6
Q ss_pred cccCHHHHHHHHHHhhcccCCc-----eEEEEEEeC-CeeeEEEEeCCCCcCccch
Q 041466 28 VIKDLSSAVKELVENSLDAGAT-----SIEIALKEY-GEEWFQVVDNGCGISPNNF 77 (824)
Q Consensus 28 Vi~~p~svVKELvENSlDAgAt-----~I~V~i~~~-G~~~I~V~DnG~GI~~~d~ 77 (824)
.+.+..-||.|++-||+.-|.. .|.|.+... +.-.|.|.|+|.|+++..+
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~ 83 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQL 83 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhc
Confidence 3446778999999999998874 677775543 3346999999999887654
No 97
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=85.51 E-value=1.1 Score=52.13 Aligned_cols=50 Identities=30% Similarity=0.432 Sum_probs=39.8
Q ss_pred ccCHHHHHHHHHHhhcccCC------ceEEEEEEe-CCeeeEEEEeCCCCcCccchh
Q 041466 29 IKDLSSAVKELVENSLDAGA------TSIEIALKE-YGEEWFQVVDNGCGISPNNFK 78 (824)
Q Consensus 29 i~~p~svVKELvENSlDAgA------t~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~ 78 (824)
+..|.=++-=|||||+-+|- -.|.|.+.. ++.-.|+|.|||.||+++-..
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~ 404 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLE 404 (456)
T ss_pred ccCchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHH
Confidence 46788899999999999983 256666654 466789999999999987654
No 98
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=85.21 E-value=3.8 Score=48.64 Aligned_cols=73 Identities=33% Similarity=0.535 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhcccCC---ceEEEEEEeCCee-eEEEEeCCCCcCccchhhhHH------------------HHHHHHH
Q 041466 32 LSSAVKELVENSLDAGA---TSIEIALKEYGEE-WFQVVDNGCGISPNNFKVRAV------------------FLCQAYA 89 (824)
Q Consensus 32 p~svVKELvENSlDAgA---t~I~V~i~~~G~~-~I~V~DnG~GI~~~d~~~l~~------------------~~l~~~a 89 (824)
+..|-..||.|||--|. ..|+|..+.-|-. .+.|.|||.||++.-++.++. .++++++
T Consensus 637 l~qv~~NLi~Naik~~~~e~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~~y~gtG~GL~I~kkI~ 716 (750)
T COG4251 637 LGQVFQNLIANAIKFGGPENPDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSRDEYLGTGLGLAICKKIA 716 (750)
T ss_pred HHHHHHHHHhhheecCCCCCCceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcCchhhhcCCCccHHHHHHHH
Confidence 45678899999998764 6699987764443 699999999999999988877 8888888
Q ss_pred hhCCceEEEEEEcCCC
Q 041466 90 LIAKGVRFVCTNTTGK 105 (824)
Q Consensus 90 l~~p~v~f~l~~~~~~ 105 (824)
-.|.+ +.-+....|.
T Consensus 717 e~H~G-~i~vEs~~gE 731 (750)
T COG4251 717 ERHQG-RIWVESTPGE 731 (750)
T ss_pred HHhCc-eEEEeecCCC
Confidence 88844 5555444333
No 99
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=81.56 E-value=4.3 Score=49.85 Aligned_cols=54 Identities=26% Similarity=0.476 Sum_probs=39.9
Q ss_pred ccCHHHHHHHHHHhhcccCC--------------ceEEEEEE-eCCeeeEEEEeCCCCcCccchhhhHH
Q 041466 29 IKDLSSAVKELVENSLDAGA--------------TSIEIALK-EYGEEWFQVVDNGCGISPNNFKVRAV 82 (824)
Q Consensus 29 i~~p~svVKELvENSlDAgA--------------t~I~V~i~-~~G~~~I~V~DnG~GI~~~d~~~l~~ 82 (824)
|+++..=+--||-||+|-|- -+|.++-. .||.-.|+|+|||-||+++-+..-|.
T Consensus 430 lE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAi 498 (716)
T COG0643 430 LERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAI 498 (716)
T ss_pred HHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHH
Confidence 44444556788999999883 46777665 46777899999999999886544343
No 100
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=80.68 E-value=2.8 Score=46.50 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=39.6
Q ss_pred cCHHHHHHHHHHhhc-ccCCceEEEEEEeCCe-eeEEEEeCCCCcCcc
Q 041466 30 KDLSSAVKELVENSL-DAGATSIEIALKEYGE-EWFQVVDNGCGISPN 75 (824)
Q Consensus 30 ~~p~svVKELvENSl-DAgAt~I~V~i~~~G~-~~I~V~DnG~GI~~~ 75 (824)
..+.-++.|++.|=. -|.|+.|.|.+--++- -..+|.|||.|+++.
T Consensus 409 vTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 409 VTLYRLCQELLNNICKHADASAVTIQLWQQDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred EeHHHHHHHHHHHHHhccccceEEEEEeeCCcEEEEEEecCCcCCCCC
Confidence 467889999999976 4899999999988776 468999999999987
No 101
>PF02742 Fe_dep_repr_C: Iron dependent repressor, metal binding and dimerisation domain; InterPro: IPR001367 The diphtheria toxin repressor protein (DTXR) is a member of this group []. In Corynebacterium diphtheriae where it has been studied in some detail this protein acts as an iron-binding repressor of dipheteria toxin gene expression and may serve as a global regulator of gene expression. The N terminus may be involved in iron binding and may associate with the Tox operator. Binding of DTXR to Tox operator requires a divalent metal ion such as cobalt, ferric, manganese and nickel whereas zinc shows weak activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005506 iron ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2X4H_D 2H09_A 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A 2F5D_A 3R61_A ....
Probab=78.70 E-value=1.5 Score=37.42 Aligned_cols=38 Identities=24% Similarity=0.499 Sum_probs=30.3
Q ss_pred HHhhcccccCCCCCHHHHHHHHHHHhccCCCCCCCCCCcee
Q 041466 764 RACRSSIMIGDALGRNEMQKILEHLADLNSPWNCPHGRPTM 804 (824)
Q Consensus 764 ~ACr~AIk~Gd~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~ 804 (824)
.||+-|-+.-..||.+-...|..-| .+|-.||||.|++
T Consensus 32 ~a~~~A~~iEH~is~e~~~~l~~~l---~~~~~~P~~~~ip 69 (71)
T PF02742_consen 32 EAEEEACRIEHVISPETIERLCKFL---GFPETCPHGNPIP 69 (71)
T ss_dssp HHHHHHHHHGCCS-HHHHHHHHHHT---TCTSBETTSCBST
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHh---cCCCcCcCCCCCC
Confidence 4666666677899999999998887 6688999999975
No 102
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=77.07 E-value=4.8 Score=47.63 Aligned_cols=70 Identities=23% Similarity=0.282 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhcccCCce---------EEEEEEe-CCeeeEEEEeCCCCcCccchhhhHH--------------HHHHH
Q 041466 32 LSSAVKELVENSLDAGATS---------IEIALKE-YGEEWFQVVDNGCGISPNNFKVRAV--------------FLCQA 87 (824)
Q Consensus 32 p~svVKELvENSlDAgAt~---------I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l~~--------------~~l~~ 87 (824)
+.+|.-.|+.||.+|.... |.++... +|.-.+.|.|||.|.+.++...+.. .+|.+
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~KGTGLGLAiVKk 680 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTREKGTGLGLAIVKK 680 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceecccccccccHHHHHH
Confidence 4578889999999985443 6776654 5777899999999999999876655 66666
Q ss_pred HHhhCCceEEEEEEc
Q 041466 88 YALIAKGVRFVCTNT 102 (824)
Q Consensus 88 ~al~~p~v~f~l~~~ 102 (824)
..--| +-++.|.+.
T Consensus 681 IvEeH-GG~leL~da 694 (712)
T COG5000 681 IVEEH-GGRLELHNA 694 (712)
T ss_pred HHHhc-CCeEEecCC
Confidence 65555 446666654
No 103
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=69.58 E-value=5.9 Score=43.57 Aligned_cols=51 Identities=33% Similarity=0.370 Sum_probs=39.7
Q ss_pred CcccCHHHHHHHHHHhh-cccCCceEEEEEEe-CCeeeEEEEeCCCCcCccch
Q 041466 27 QVIKDLSSAVKELVENS-LDAGATSIEIALKE-YGEEWFQVVDNGCGISPNNF 77 (824)
Q Consensus 27 eVi~~p~svVKELvENS-lDAgAt~I~V~i~~-~G~~~I~V~DnG~GI~~~d~ 77 (824)
||-+.+.-||.|-+-|= --||||+|.|.++. ++.-...|.|||.|.+....
T Consensus 355 e~~talyRv~QEaltNIErHa~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~ 407 (459)
T COG4564 355 EVATALYRVVQEALTNIERHAGATRVTILLQQMGDMVQLMVRDNGVGFSVKEA 407 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCcceEEEEecCCCCccchhh
Confidence 34455677888887774 35799999999986 55667999999999997654
No 104
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=61.94 E-value=12 Score=36.78 Aligned_cols=46 Identities=30% Similarity=0.397 Sum_probs=34.1
Q ss_pred ccCHHHHHHHHHHhhcccC-C-----ceEEEEEEe-CCeeeEEEEeCCCCcCc
Q 041466 29 IKDLSSAVKELVENSLDAG-A-----TSIEIALKE-YGEEWFQVVDNGCGISP 74 (824)
Q Consensus 29 i~~p~svVKELvENSlDAg-A-----t~I~V~i~~-~G~~~I~V~DnG~GI~~ 74 (824)
+.+..-+|-|++.|++..+ + +.|.|.+.- .|.-.|+|.|-|.||..
T Consensus 38 ~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~~ 90 (146)
T COG2172 38 IADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIED 90 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCeEEEEEEeCCCCCCC
Confidence 4578899999999999763 3 455555442 35568999999977764
No 105
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=60.19 E-value=8 Score=38.33 Aligned_cols=37 Identities=30% Similarity=0.527 Sum_probs=30.9
Q ss_pred HHhhcccccCCCCCHHHHHHHHHHHhccCCCCCCCCCCce
Q 041466 764 RACRSSIMIGDALGRNEMQKILEHLADLNSPWNCPHGRPT 803 (824)
Q Consensus 764 ~ACr~AIk~Gd~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt 803 (824)
.||+-|-.+-..++..-+.+|-+-|. +|-.||||+|+
T Consensus 96 ~~~~ea~~leh~~s~~~~~rl~~~l~---~~~~~p~g~~i 132 (154)
T COG1321 96 EAHEEAEGLEHALSDETAERLDELLG---FPTRCPHGKPI 132 (154)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhC---CCccCCCCCcc
Confidence 47777777888999998888888774 48899999997
No 106
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=55.15 E-value=16 Score=40.99 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=41.3
Q ss_pred cc-CHHHHHHHHHHhhcccC----------CceEEEEEEeCCee-eEEEEeCCCCcCccchhhh
Q 041466 29 IK-DLSSAVKELVENSLDAG----------ATSIEIALKEYGEE-WFQVVDNGCGISPNNFKVR 80 (824)
Q Consensus 29 i~-~p~svVKELvENSlDAg----------At~I~V~i~~~G~~-~I~V~DnG~GI~~~d~~~l 80 (824)
|. -+.-.+=||..||.-|- -.-|.|.|..|--+ .|+++|-|-||+.++.+.|
T Consensus 257 vPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drl 320 (414)
T KOG0787|consen 257 VPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRL 320 (414)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHH
Confidence 44 36678999999999882 34589998877655 5999999999999998644
No 107
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=53.39 E-value=12 Score=43.05 Aligned_cols=44 Identities=25% Similarity=0.484 Sum_probs=32.8
Q ss_pred HHHHHHHhhcccC----------------CceEEEEEEe-CCeeeEEEEeCCCCcCccchh
Q 041466 35 AVKELVENSLDAG----------------ATSIEIALKE-YGEEWFQVVDNGCGISPNNFK 78 (824)
Q Consensus 35 vVKELvENSlDAg----------------At~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~ 78 (824)
-++|||-||-||= --..+|.|+- --...+.|.|.|.||..+|+-
T Consensus 99 FLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edLi 159 (785)
T KOG0020|consen 99 FLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDLI 159 (785)
T ss_pred HHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHHH
Confidence 4789999999982 2234555553 345689999999999999873
No 108
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=49.64 E-value=19 Score=41.42 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHhhcccCCce---EEEEEE--eCCeeeEEEEeCCCCcCccchh
Q 041466 31 DLSSAVKELVENSLDAGATS---IEIALK--EYGEEWFQVVDNGCGISPNNFK 78 (824)
Q Consensus 31 ~p~svVKELvENSlDAgAt~---I~V~i~--~~G~~~I~V~DnG~GI~~~d~~ 78 (824)
+.-.|.-.|+-||+||-.+. |.|.+. ++|.-.|-|.|||.|-+.+=++
T Consensus 564 ~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~d 616 (673)
T COG4192 564 SIEQVLVNLIVNALDASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVD 616 (673)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEeecCcccceEEEEecCCCCCchhHHH
Confidence 56788999999999997554 666554 4667789999999999976554
No 109
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=45.74 E-value=25 Score=43.14 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=40.7
Q ss_pred CcccCHHHHHHHHHHhhcc----cCCceEEEEEEeCCeeeEEEEeCCCCcCccc
Q 041466 27 QVIKDLSSAVKELVENSLD----AGATSIEIALKEYGEEWFQVVDNGCGISPNN 76 (824)
Q Consensus 27 eVi~~p~svVKELvENSlD----AgAt~I~V~i~~~G~~~I~V~DnG~GI~~~d 76 (824)
.-+.-+..+.-|.+-||.| ++-..|.|.|... ...|.|.+||.||+-+-
T Consensus 49 t~~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e-~~~isv~nnGkGIPv~~ 101 (842)
T KOG0355|consen 49 TYVPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKE-KNEISVYNNGKGIPVTI 101 (842)
T ss_pred ecCCcHHHHHHHHhhcccccccCCCcceeEEEEccC-CCEEEEEeCCCcceeee
Confidence 5566788999999999998 6778888888753 45799999999999664
No 110
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=44.12 E-value=18 Score=42.61 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=64.2
Q ss_pred cCCCCcEEEEEEeCcEEEEEeCCcEEEEehhhHHHHHHHHHHhcccC-CCccccccccee------ecCHH---------
Q 041466 612 EDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLSQSTV-LNQQPLLRPLKL------DLTPE--------- 675 (824)
Q Consensus 612 ~~~~~~~vigQ~~~~fIl~~~~~~L~iIDQHAAhERi~yE~l~~~~~-~~sQ~Ll~P~~l------~Ls~~--------- 675 (824)
+.|..+.++|-++..+++++.+..||++|---.-+-+.|-.+....+ ...-+|..|..+ .+..+
T Consensus 468 e~~~n~~yVG~vd~~~alvQh~t~Ly~~d~~~ls~ElfYQi~i~dF~Nfg~~~l~~p~~l~el~~l~l~~e~~~~~~~d~ 547 (694)
T KOG1979|consen 468 EMFRNLSYVGVVDERTALVQHGTSLYLCDTVSLSKELFYQILITDFGNFGKIRLSEPLPLSELLMLALESEEPGWTADDG 547 (694)
T ss_pred HHHHhcceeeeechhhhhhhcCceEEEechHHHHHHHHHHHHHHHhcccceeecCCCccHHHHHHHhccCccCCCCccch
Confidence 45778999999999999999999999999998888788887776542 333344444321 12111
Q ss_pred --------HHHHHHHHHHHH-HHcCeEEEecCCCCCccEEEEEeeCCCcc
Q 041466 676 --------EEVVASMHMDII-RKNGFSLEEDPHALAGLRFRLKAVPFSKK 716 (824)
Q Consensus 676 --------e~~~l~~~~~~L-~~~Gf~~e~~~~~~~~~~v~l~~vP~~~~ 716 (824)
-.+.|.++.+.| .-+++++... |. |.++|.+..
T Consensus 548 ~ke~~~~~~~e~l~~ka~ml~dYFsi~i~e~-----g~---l~~lP~L~~ 589 (694)
T KOG1979|consen 548 FKEKIARFAAEKLLEKADMLHDYFSIEIDEE-----GL---LTGLPSLLH 589 (694)
T ss_pred hHHHHHHHHHHHHhhhHHHHhhheEEEEccC-----Cc---eecCchhhc
Confidence 124455666766 3445554432 22 899998754
No 111
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=42.81 E-value=26 Score=41.61 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=47.1
Q ss_pred CcccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccC--------------CceEEEEEE-eCCeeeEEEEeCCCCcCcc
Q 041466 11 TIRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAG--------------ATSIEIALK-EYGEEWFQVVDNGCGISPN 75 (824)
Q Consensus 11 ~I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAg--------------At~I~V~i~-~~G~~~I~V~DnG~GI~~~ 75 (824)
.|+.|..-+|+..-|+- .--+.|||-||=||= .....|+|. +.-...|.+.|.|.||+.+
T Consensus 42 E~~qLm~lii~s~YS~k-----EvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~ 116 (656)
T KOG0019|consen 42 ETNQLMDIVAKSLYSHK-----EVFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKE 116 (656)
T ss_pred hHHhHHHHHHHHhhcch-----HHHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHH
Confidence 48889999999999982 235889999999882 134444443 2334579999999999999
Q ss_pred chh
Q 041466 76 NFK 78 (824)
Q Consensus 76 d~~ 78 (824)
|+.
T Consensus 117 dLv 119 (656)
T KOG0019|consen 117 DLV 119 (656)
T ss_pred HHH
Confidence 974
No 112
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=34.68 E-value=47 Score=30.80 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=13.4
Q ss_pred cEEEEehhhHHHHHHHH
Q 041466 635 DLFIVDQHAADEKYNFE 651 (824)
Q Consensus 635 ~L~iIDQHAAhERi~yE 651 (824)
.++||.||+| |+|+++
T Consensus 64 aIiLInq~~A-e~iR~~ 79 (121)
T KOG3432|consen 64 AIILINQFIA-EMIRDR 79 (121)
T ss_pred EEEEEhHHHH-HHHHHH
Confidence 4788999999 788775
No 113
>PF14501 HATPase_c_5: GHKL domain
Probab=33.69 E-value=2.3e+02 Score=25.31 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHhhcccC-----CceEEEEEEe-CCeeeEEEEeCCCCcCcc---------chhhhHHHHHHHHHhhCCce
Q 041466 31 DLSSAVKELVENSLDAG-----ATSIEIALKE-YGEEWFQVVDNGCGISPN---------NFKVRAVFLCQAYALIAKGV 95 (824)
Q Consensus 31 ~p~svVKELvENSlDAg-----At~I~V~i~~-~G~~~I~V~DnG~GI~~~---------d~~~l~~~~l~~~al~~p~v 95 (824)
++..++--|+||||+|- ...|.|.+.. +|.-.|.|.-.-.+ ..+ +-..+++..|++++-.|.+
T Consensus 5 dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~~~i~i~N~~~~-~~~~~~~~~~~~~~~G~GL~~v~~i~~~y~g- 82 (100)
T PF14501_consen 5 DLCRILGNLLDNAIEACKKYEDKRFISISIREENGFLVIIIENSCEK-EIEKLESSSSKKKGHGIGLKNVKKILEKYNG- 82 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCC-ccccccccccCCCCCCcCHHHHHHHHHHCCC-
Confidence 56788999999999983 4477787765 45555666544333 111 1113555777777777766
Q ss_pred EEEEEEcC
Q 041466 96 RFVCTNTT 103 (824)
Q Consensus 96 ~f~l~~~~ 103 (824)
.+++...+
T Consensus 83 ~~~~~~~~ 90 (100)
T PF14501_consen 83 SLSIESED 90 (100)
T ss_pred EEEEEEEC
Confidence 77766544
No 114
>PRK13669 hypothetical protein; Provisional
Probab=28.89 E-value=46 Score=29.18 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=28.1
Q ss_pred eEEEEEEeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhh
Q 041466 147 CKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKG 192 (824)
Q Consensus 147 ~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~ 192 (824)
+.-.|-++....+ + .+-|-+||||+|....-...+.++|+.
T Consensus 31 Vie~gCls~CG~C--~---~~~FAlVng~~V~a~t~eeL~~kI~~~ 71 (78)
T PRK13669 31 VLEYGCLGYCGIC--S---EGLFALVNGEVVEGETPEELVENIYAH 71 (78)
T ss_pred EEEcchhhhCcCc--c---cCceEEECCeEeecCCHHHHHHHHHHH
Confidence 3445667776543 2 245999999999988766666666654
No 115
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=25.07 E-value=2e+02 Score=24.28 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCeEEEecCCCCCccEEEEEeeCCCccccCChhhHHHHHHHHH
Q 041466 681 SMHMDIIRKNGFSLEEDPHALAGLRFRLKAVPFSKKITFGVEDVKDLISTLA 732 (824)
Q Consensus 681 ~~~~~~L~~~Gf~~e~~~~~~~~~~v~l~~vP~~~~~~l~~~d~~ell~~l~ 732 (824)
.+....|+++||.++... ++.+ .-.+|.+..... ...+++.+++
T Consensus 22 ~~i~~~L~~lg~~~~~~~----~~~~-~v~vP~~R~Di~---~~~DliEEia 65 (70)
T PF03484_consen 22 EEIIKILKRLGFKVEKID----GDTL-EVTVPSYRFDIE---HEEDLIEEIA 65 (70)
T ss_dssp HHHHHHHHHTT-EEEE-C----TTEE-EEEEETTSTT-S---SHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEECC----CCEE-EEEcCCCcCCcC---cccHHHHHHH
Confidence 455678999999999842 3445 456798753333 3344444443
No 116
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=25.02 E-value=70 Score=28.07 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=28.5
Q ss_pred eEEEEEEeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhh
Q 041466 147 CKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKG 192 (824)
Q Consensus 147 ~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~ 192 (824)
+...|=++....+ +..-|.+||||+|....-...+.++|+.
T Consensus 31 Vie~gCl~~Cg~C-----~~~pFAlVnG~~V~A~t~eeL~~kI~~~ 71 (78)
T PF07293_consen 31 VIEYGCLSYCGPC-----AKKPFALVNGEIVAAETAEELLEKIKEK 71 (78)
T ss_pred EEEcChhhhCcCC-----CCCccEEECCEEEecCCHHHHHHHHHHH
Confidence 4456778877653 2345999999999988766666665554
No 117
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=22.30 E-value=37 Score=38.08 Aligned_cols=33 Identities=39% Similarity=0.589 Sum_probs=26.6
Q ss_pred HHHHHHhhcccCCceEEEEEEeCCeeeEEEEeCCCCcC
Q 041466 36 VKELVENSLDAGATSIEIALKEYGEEWFQVVDNGCGIS 73 (824)
Q Consensus 36 VKELvENSlDAgAt~I~V~i~~~G~~~I~V~DnG~GI~ 73 (824)
.-|||--|||+||++|.|-| || .-=.|-|.||-
T Consensus 114 tGeLI~~Ald~Ga~~IiiGi--GG---SATnDgG~Gml 146 (378)
T COG1929 114 TGELIKHALDAGAKHIIIGI--GG---SATNDGGAGML 146 (378)
T ss_pred HHHHHHHHHhCCCcEEEEec--cc---cccCCchHHHH
Confidence 67999999999999999944 33 44568888986
No 118
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=21.58 E-value=1.3e+02 Score=26.45 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCeEEEecCCCCCccEEEEEeeCCC
Q 041466 678 VVASMHMDIIRKNGFSLEEDPHALAGLRFRLKAVPFS 714 (824)
Q Consensus 678 ~~l~~~~~~L~~~Gf~~e~~~~~~~~~~v~l~~vP~~ 714 (824)
..+-.+++.|+++|++|+... +.-+.|...|..
T Consensus 34 taVwK~Iq~Lr~~G~~I~s~~----~kGY~L~~~~~l 66 (79)
T COG1654 34 TAVWKHIQQLREEGVDIESVR----GKGYLLPQLPDL 66 (79)
T ss_pred HHHHHHHHHHHHhCCceEecC----CCceeccCcccc
Confidence 356789999999999999853 345677777765
No 119
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=21.13 E-value=1e+02 Score=24.32 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=15.1
Q ss_pred HHHHhccCCCC-CCCCCCceeEE
Q 041466 785 LEHLADLNSPW-NCPHGRPTMRH 806 (824)
Q Consensus 785 l~~L~~~~~P~-~CPHGRPt~~~ 806 (824)
++-|...--|| ..|.|||.+.+
T Consensus 21 ~~~L~~~Gi~~~~~~~G~p~V~r 43 (47)
T PF13986_consen 21 IRWLRRNGIPFVVRADGRPIVTR 43 (47)
T ss_pred HHHHHHCCCeeEECCCCCEEeeH
Confidence 45555556666 47999998764
Done!