Query 041466
Match_columns 824
No_of_seqs 302 out of 1879
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 12:19:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h4l_A DNA mismatch repair pro 100.0 2.7E-55 9.3E-60 484.6 21.1 238 9-247 3-362 (367)
2 3na3_A DNA mismatch repair pro 100.0 5.2E-52 1.8E-56 454.5 19.6 231 10-247 7-339 (348)
3 1h7s_A PMS1 protein homolog 2; 100.0 6.8E-51 2.3E-55 451.2 22.7 238 7-244 10-364 (365)
4 3kdg_A DNA mismatch repair pro 100.0 5.2E-49 1.8E-53 401.2 18.6 187 612-817 4-196 (197)
5 3ncv_A DNA mismatch repair pro 100.0 1.7E-48 5.8E-53 402.5 19.4 188 612-817 25-219 (220)
6 1b63_A MUTL; DNA mismatch repa 100.0 4.4E-48 1.5E-52 424.9 22.2 224 12-243 5-332 (333)
7 1x9z_A DNA mismatch repair pro 100.0 2.3E-38 7.9E-43 320.5 17.7 175 613-817 5-185 (188)
8 3cwv_A DNA gyrase, B subunit, 99.7 6.1E-17 2.1E-21 179.2 18.7 200 30-244 29-345 (369)
9 1s16_A Topoisomerase IV subuni 99.7 6.1E-16 2.1E-20 172.5 22.3 222 9-244 7-359 (390)
10 1ei1_A DNA gyrase B, GYRB; ATP 99.7 2.4E-16 8.3E-21 175.6 15.8 220 10-244 7-361 (391)
11 2ioq_A Chaperone protein HTPG; 99.6 1.7E-16 5.8E-21 185.5 9.3 202 11-241 12-354 (624)
12 1y4s_A Chaperone protein HTPG; 99.6 9.1E-17 3.1E-21 185.6 6.3 199 12-241 13-354 (559)
13 1kij_A DNA gyrase subunit B; t 99.6 6.5E-14 2.2E-18 156.4 18.5 219 10-243 6-359 (390)
14 2o1u_A Endoplasmin; GRP94, HSP 99.5 4.3E-16 1.5E-20 182.6 0.7 201 12-241 31-378 (666)
15 3fv5_A DNA topoisomerase 4 sub 99.3 2E-12 6.7E-17 131.6 8.7 46 30-77 16-65 (201)
16 3lnu_A Topoisomerase IV subuni 99.0 4.5E-08 1.5E-12 109.0 23.1 221 10-245 27-378 (408)
17 4duh_A DNA gyrase subunit B; s 98.9 1.4E-09 4.8E-14 111.8 9.4 66 10-77 8-83 (220)
18 3ttz_A DNA gyrase subunit B; p 98.9 2.5E-09 8.6E-14 108.3 10.6 45 30-76 30-78 (198)
19 2ior_A Chaperone protein HTPG; 98.9 2.1E-10 7.3E-15 119.5 2.1 64 11-80 32-113 (235)
20 2gqp_A Endoplasmin; GRP94, HSP 98.8 7.3E-10 2.5E-14 115.4 2.6 62 11-78 17-96 (236)
21 1yc1_A HSP 86, heat shock prot 98.8 5.2E-10 1.8E-14 118.2 1.1 62 12-78 54-132 (264)
22 4emv_A DNA topoisomerase IV, B 98.7 4.6E-08 1.6E-12 100.9 9.7 65 10-76 14-87 (226)
23 3t0h_A Heat shock protein HSP 98.7 2.9E-09 1E-13 110.1 0.4 62 12-78 18-96 (228)
24 2wer_A ATP-dependent molecular 98.6 3.5E-09 1.2E-13 109.2 0.5 61 12-78 12-90 (220)
25 1zxm_A TOPO IIA ATPase, DNA to 98.6 2.2E-08 7.6E-13 111.6 6.4 47 29-76 50-101 (400)
26 2zbk_B Type 2 DNA topoisomeras 98.6 4.3E-09 1.5E-13 121.6 0.5 52 30-81 30-90 (530)
27 1mu5_A Type II DNA topoisomera 98.6 8.3E-09 2.8E-13 117.8 2.4 53 30-82 31-92 (471)
28 3o0i_A HSP90AA1 protein; HSP90 98.6 7.6E-09 2.6E-13 108.2 1.0 63 12-79 46-125 (256)
29 2q2e_B Type 2 DNA topoisomeras 98.6 7E-09 2.4E-13 121.5 -0.1 52 30-81 36-94 (621)
30 1qy5_A Endoplasmin; GRP94, NEC 98.3 1.2E-07 4.2E-12 100.2 2.8 61 12-78 14-92 (269)
31 3peh_A Endoplasmin homolog; st 97.9 4.6E-06 1.6E-10 88.1 3.3 61 12-78 32-110 (281)
32 2cg9_A ATP-dependent molecular 97.8 5.1E-06 1.7E-10 97.8 2.3 50 28-78 23-90 (677)
33 3nmq_A Heat shock protein HSP 97.7 1E-05 3.4E-10 83.8 1.8 61 12-78 25-103 (239)
34 3zxo_A Redox sensor histidine 97.6 0.00038 1.3E-08 63.9 11.7 72 31-104 43-115 (129)
35 1pvg_A DNA topoisomerase II; G 97.5 3.8E-05 1.3E-09 86.0 3.5 48 30-78 63-115 (418)
36 3zxq_A Hypoxia sensor histidin 97.5 0.00056 1.9E-08 62.4 10.5 73 31-106 39-113 (124)
37 3ehg_A Sensor kinase (YOCF pro 97.5 0.00055 1.9E-08 63.2 10.3 71 32-103 41-115 (128)
38 1id0_A PHOQ histidine kinase; 97.3 0.0009 3.1E-08 63.1 10.5 74 31-105 44-134 (152)
39 1i58_A Chemotaxis protein CHEA 97.2 0.00093 3.2E-08 65.8 9.2 46 32-77 48-108 (189)
40 1ysr_A Sensor-type histidine k 97.2 0.0023 7.8E-08 60.3 11.2 72 31-103 46-136 (150)
41 3jz3_A Sensor protein QSEC; he 97.1 0.00092 3.1E-08 66.9 8.3 47 32-81 118-166 (222)
42 3ehh_A Sensor kinase (YOCF pro 97.1 0.0021 7E-08 64.4 10.4 71 32-103 131-205 (218)
43 1th8_A Anti-sigma F factor; SP 97.1 0.0019 6.5E-08 60.8 9.3 44 30-73 38-87 (145)
44 3a0y_A Sensor protein; ATP-LID 96.9 0.0024 8.1E-08 59.9 8.9 73 31-103 47-136 (152)
45 2c2a_A Sensor histidine kinase 96.9 0.0026 9E-08 65.6 10.0 51 31-81 138-194 (258)
46 4ew8_A Sensor protein DIVL; si 96.9 0.0029 9.8E-08 65.4 9.5 74 32-106 156-246 (268)
47 1r62_A Nitrogen regulation pro 96.9 0.0021 7.3E-08 60.7 7.8 72 31-103 48-147 (160)
48 3d36_A Sporulation kinase B; G 96.8 0.003 1E-07 64.1 9.2 74 31-105 123-214 (244)
49 1bxd_A ENVZ(290-450), protein 96.8 0.0011 3.9E-08 63.2 5.6 49 31-79 47-96 (161)
50 3sl2_A Sensor histidine kinase 96.6 0.0055 1.9E-07 59.4 8.9 49 31-79 43-96 (177)
51 1gkz_A [3-methyl-2-oxobutanoat 96.6 0.0043 1.5E-07 68.7 9.0 51 30-80 237-298 (388)
52 1b3q_A Protein (chemotaxis pro 96.5 0.0042 1.4E-07 68.8 8.3 48 30-77 105-167 (379)
53 2q8g_A [pyruvate dehydrogenase 96.4 0.0048 1.6E-07 68.8 8.1 75 31-106 243-353 (407)
54 3a0r_A Sensor protein; four he 96.4 0.0049 1.7E-07 66.0 7.7 72 31-102 244-332 (349)
55 1y8o_A [pyruvate dehydrogenase 95.9 0.0037 1.3E-07 70.1 3.6 50 32-81 254-314 (419)
56 2e0a_A Pyruvate dehydrogenase 95.7 0.0048 1.7E-07 68.5 3.8 50 31-80 230-289 (394)
57 2btz_A Pyruvate dehydrogenase 95.6 0.0048 1.6E-07 68.5 3.1 50 31-80 231-290 (394)
58 4fpp_A Phosphotransferase; fou 94.5 0.098 3.4E-06 53.8 9.1 73 31-104 146-237 (247)
59 4gfh_A DNA topoisomerase 2; to 94.5 0.024 8.1E-07 71.0 5.0 44 30-75 58-107 (1177)
60 3ied_A Heat shock protein; HSP 94.3 0.015 5.1E-07 60.4 2.2 28 50-78 120-147 (272)
61 1ixm_A SPO0B, protein (sporula 88.8 0.38 1.3E-05 48.0 4.9 44 37-80 111-165 (192)
62 3ke6_A Protein RV1364C/MT1410; 88.4 0.31 1.1E-05 54.0 4.4 63 28-90 294-366 (399)
63 3rbn_A DNA mismatch repair pro 78.7 6.1 0.00021 41.5 8.9 114 613-734 57-196 (284)
64 2x4h_A Hypothetical protein SS 62.9 4.3 0.00015 37.2 3.1 27 774-803 111-137 (139)
65 3hrs_A Metalloregulator SCAR; 57.2 4.6 0.00016 40.5 2.4 30 772-804 100-129 (214)
66 1fx7_A Iron-dependent represso 56.2 6.1 0.00021 39.9 3.1 30 772-804 104-133 (230)
67 2qq9_A Diphtheria toxin repres 32.2 23 0.00077 35.6 2.8 29 773-804 105-133 (226)
68 3h0d_A CTSR; protein DNA compl 24.4 1.5E+02 0.0051 28.2 6.7 44 668-714 32-75 (155)
No 1
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-55 Score=484.64 Aligned_cols=238 Identities=41% Similarity=0.652 Sum_probs=214.5
Q ss_pred CCCcccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCCceEEEEEEeCCeeeEEEEeCCCCcCccchhhhHH------
Q 041466 9 SPTIRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGATSIEIALKEYGEEWFQVVDNGCGISPNNFKVRAV------ 82 (824)
Q Consensus 9 ~~~I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgAt~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l~~------ 82 (824)
|++|+.||+++++||||||||++|++||||||||||||||+.|.|.+.++|...|+|.|||+||++++++.++.
T Consensus 3 M~~I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 3 MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp ----------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CCcceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccCc
Confidence 56899999999999999999999999999999999999999999999989988999999999999999887654
Q ss_pred --------------------------------------------------------------------------------
Q 041466 83 -------------------------------------------------------------------------------- 82 (824)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (824)
T Consensus 83 ~~~~~Dl~~i~t~GfrGeaL~Si~avS~l~V~sr~~~~~~~~~~~~~~G~~~~~~~~~~~~GTtV~v~~LF~n~P~R~k~ 162 (367)
T 3h4l_A 83 IAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKADKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKE 162 (367)
T ss_dssp -------CCCCEEEETTHHHHHHHHSSEEEEEEESSTTCEEEEEECTTCCEEEEEEECCSSEEEEEEESTTTTCHHHHHH
T ss_pred CCchhhhhhhhccCccchHHHHhhccCEEEEEEEECCCCEEEEEEcCCCcEEeeccccCCCCeEEEEchhhccCchhhhh
Confidence
Q ss_pred -------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhccccccccceeeEe--------
Q 041466 83 -------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIYNCLEPVAI-------- 141 (824)
Q Consensus 83 -------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~~~~~l~~i~~-------- 141 (824)
++|++||++||+|+|+|+++.+++.+..+|++++.++++++|.+|||..++.+|++++.
T Consensus 163 flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~t~~~~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~ 242 (367)
T 3h4l_A 163 FSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFK 242 (367)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCSSCCHHHHHHHHHCTTTTTTEEEEEEEEECGGGC
T ss_pred hccchHHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCcceEEEECCCCCCHHHHHHHHhCHHHHhccEEEeccccccccc
Confidence 78899999999999999997656666788999999999999999999999999999987
Q ss_pred ---------------ecCCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhhccCCCCcEEEEEEE
Q 041466 142 ---------------CKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSRQYPIAIMNFI 206 (824)
Q Consensus 142 ---------------~~~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~~~~~~~P~~~L~i~ 206 (824)
. ...++|+|||++|.++++|+++++||||||||||+++.|.+||+++|+.+++.+||++||+|+
T Consensus 243 ~~~~~~~~~~~~~~~~-~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~~~~~~P~~~L~l~ 321 (367)
T 3h4l_A 243 NRMLGKYTDDPDFLDL-DYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYKTFNNVQFPAVFLNLE 321 (367)
T ss_dssp CCCC-------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECCHHHHHHHHHHHHTTCSSCBCCEEEEEE
T ss_pred cccccccccccccccc-CCcEEEEEEEeCCcccccCCCCCcEEEEECCCEecCHHHHHHHHHHHHhcCCCCCcEEEEEEE
Confidence 3 456999999999998778999999999999999999999999999999998779999999999
Q ss_pred cCCCceeeeccCCCCEEEeCChhHHHHHHHHHHHHHhcCCC
Q 041466 207 VPTRACDVNVTPDKRKVFFSDECSILHALREGLQEIYSPNN 247 (824)
Q Consensus 207 ~~p~~vDVNVhP~K~eV~f~~e~~v~~~i~~~l~~~l~~~~ 247 (824)
|||..|||||||+|+||+|++|+.|+++|+.+|+++|.+++
T Consensus 322 ~~p~~vDVNVhP~K~eV~f~~e~~i~~~i~~~l~~~~~~~~ 362 (367)
T 3h4l_A 322 LPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYYNRQE 362 (367)
T ss_dssp CCGGGEECCCSSSTTCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHcceeECCCCCEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999997643
No 2
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=100.00 E-value=5.2e-52 Score=454.53 Aligned_cols=231 Identities=28% Similarity=0.437 Sum_probs=190.3
Q ss_pred CCcccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCCceEEEEEEeCCeeeEEEEeCCCCcCccchhhhHH-------
Q 041466 10 PTIRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGATSIEIALKEYGEEWFQVVDNGCGISPNNFKVRAV------- 82 (824)
Q Consensus 10 ~~I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgAt~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l~~------- 82 (824)
++|+.||+++++||||||||++|++||+|||+|||||||+.|.|.+..+|...|+|.|||+||++++++.++.
T Consensus 7 ~~I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~ 86 (348)
T 3na3_A 7 GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKL 86 (348)
T ss_dssp CCCCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSC
T ss_pred cccccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEeCCEEEEEEEECCcCcChHHhhhhhcccccccc
Confidence 3599999999999999999999999999999999999999999999998888899999999999999987765
Q ss_pred --------------------------------------------------------------------------------
Q 041466 83 -------------------------------------------------------------------------------- 82 (824)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (824)
T Consensus 87 ~~~~dl~~i~s~GfrGeaL~Si~avs~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~v~~LF~n~P~R~k~ 166 (348)
T 3na3_A 87 QSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKA 166 (348)
T ss_dssp CCC---------CCTTCHHHHHHHSSEEEEEEECTTCSSEEEEEEETTEESSCCEEECCCSEEEEEEESTTTTCHHHHHT
T ss_pred CcchhhhccccCCcCChHHHHhhcccEEEEEEEECCCCceEEEEEeCCEEeeeeeEecCCCCcEEEECcccccCchhhhh
Confidence
Q ss_pred ------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhccccccccceeeEeecCC--ceE
Q 041466 83 ------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIYNCLEPVAICKSD--SCK 148 (824)
Q Consensus 83 ------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~~~~~l~~i~~~~~~--~~~ 148 (824)
++|++||++||+|+|+|++++ +. ...|.++++++++++|.+|||..++++|++++.+ .+ .++
T Consensus 167 lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g-~~--~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~v~~~-~~~~~~~ 242 (348)
T 3na3_A 167 LKNPSEEYGKILEVVGRYSVHNAGISFSVKKQG-ET--VADVRTLPNASTVDNIRSIFGNAVSRELIEIGCE-DKTLAFK 242 (348)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETT-CS--SCSEECCTTCCHHHHHHHHHCHHHHTTEEEEEEE-EGGGTEE
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCeEEEEEECC-EE--EEEeecCCCCCHHHHHHHHhChHhHhhcEEEEee-cCCccEE
Confidence 899999999999999999975 32 2347888889999999999999999999999987 44 489
Q ss_pred EEEEEeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhhccCC-CCcEEEEEEEcCCCceeeeccCCCCEEEeCC
Q 041466 149 VEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSR-QYPIAIMNFIVPTRACDVNVTPDKRKVFFSD 227 (824)
Q Consensus 149 i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~~~~~-~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~ 227 (824)
|+|||++|.+. ..+.+||||||||||+++.|.+||+++|+.++|+ +||+++|+|+|||+.|||||||+|+||+|++
T Consensus 243 i~G~is~p~~~---~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~ 319 (348)
T 3na3_A 243 MNGYISNANYS---VKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLH 319 (348)
T ss_dssp EEEEEECSSCC---BSSCEEEEEETTEECCCTTHHHHHHHHHHTTSCTTCBCEEEEEEECC-------------------
T ss_pred EEEEEeCCccC---CCcccEEEEECCeEecCHHHHHHHHHHHHHhCcCCCceEEEEEEEeChhheeeeeCCCcCEEEEcC
Confidence 99999999863 2456899999999999999999999999999998 9999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCC
Q 041466 228 ECSILHALREGLQEIYSPNN 247 (824)
Q Consensus 228 e~~v~~~i~~~l~~~l~~~~ 247 (824)
|+.|+++|+.+|+++|...+
T Consensus 320 e~~i~~~i~~~v~~~l~~~~ 339 (348)
T 3na3_A 320 EESILERVQQHIESKLLGSN 339 (348)
T ss_dssp ---CTHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999997654
No 3
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=100.00 E-value=6.8e-51 Score=451.16 Aligned_cols=238 Identities=43% Similarity=0.748 Sum_probs=198.0
Q ss_pred CCCCCcccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCCceEEEEEEeCCeeeEEEEeCCCCcCccchhhhHH----
Q 041466 7 TNSPTIRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGATSIEIALKEYGEEWFQVVDNGCGISPNNFKVRAV---- 82 (824)
Q Consensus 7 ~~~~~I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgAt~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l~~---- 82 (824)
|-|++|+.||+.++++|+|||||++|.+||+|||+|||||||+.|.|.+..+|...|+|.|||+||+++|++.++.
T Consensus 10 ~~~~~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~~f~~~~t 89 (365)
T 1h7s_A 10 EPAKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHT 89 (365)
T ss_dssp -------------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGSGGGGC----
T ss_pred ccchhhccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCcEEEEEEECCCCcCHHHHHHHhhhccc
Confidence 4456799999999999999999999999999999999999999999999988888999999999999999876543
Q ss_pred --------------------------------------------------------------------------------
Q 041466 83 -------------------------------------------------------------------------------- 82 (824)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (824)
T Consensus 90 sK~~~~~dl~~i~s~G~rG~gl~si~~vs~v~v~t~~~~~~~~~~~~~~~~G~~~~~~~~~~~~GT~V~v~~LF~n~P~R 169 (365)
T 1h7s_A 90 SKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVR 169 (365)
T ss_dssp ------CCTTCSEEESSSSSHHHHHHHHSEEEEEEECTTCSSCEEEEECTTSCEEEEEECCCCSEEEEEEESTTTTSHHH
T ss_pred cccccccchhcccccCCCCchhhhhhhhccEEEEEccCCCcceEEEEEcCCCceEeecccCCCCCcEEEEeecccccchh
Confidence
Q ss_pred ----------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhccccccccceeeEeec---
Q 041466 83 ----------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIYNCLEPVAICK--- 143 (824)
Q Consensus 83 ----------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~~~~~l~~i~~~~--- 143 (824)
++|++||+++|+|+|+|.++++++.++.+|+++++++++++|.+|||..++.+|++++...
T Consensus 170 ~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~i~~~~~~~ 249 (365)
T 1h7s_A 170 HKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSD 249 (365)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCCCSSHHHHHHHHHCHHHHHTEEECCCCCCCH
T ss_pred hhhhccchHHHHHHHHHhhhhhhhcCCceEEEEEecCCCCcEEEEEEcCCCchHHHHHHHhcChHhHhceEEEeccCCcc
Confidence 6788999999999999999875666678899999899999999999999999999986531
Q ss_pred --------------CCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCChHHHHHHHHHhhhccCCCCcEEEEEEEcCC
Q 041466 144 --------------SDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLPKVSKLVNELYKGANSRQYPIAIMNFIVPT 209 (824)
Q Consensus 144 --------------~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y~~~~~~~~P~~~L~i~~~p 209 (824)
...++|+|||++|.++++|+++++||||||||||+++.|.+||+++|+.+++.+||+++|+|+|||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~v~G~i~~p~~~~~r~~~~~q~~fvNgR~v~~~~l~~ai~~~y~~~~~~~~P~~~L~l~~~p 329 (365)
T 1h7s_A 250 SVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMYNRHQYPFVVLNISVDS 329 (365)
T ss_dssp HHHHHHTCCTTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECCHHHHHHHHHHHHTTCTTCBCCEEEEEECCG
T ss_pred cccccccccccccccccEEEEEEEeCcccccccCCCcceEEEECCeEecCHHHHHHHHHHHHhhCccCCcEEEEEEEeCh
Confidence 146999999999998777999999999999999999999999999999999999999999999999
Q ss_pred CceeeeccCCCCEEEeCChhHHHHHHHHHHHHHhc
Q 041466 210 RACDVNVTPDKRKVFFSDECSILHALREGLQEIYS 244 (824)
Q Consensus 210 ~~vDVNVhP~K~eV~f~~e~~v~~~i~~~l~~~l~ 244 (824)
..|||||||+|+||+|++|+.|+++|+.+|+++|.
T Consensus 330 ~~vDvNVhP~K~eV~f~~e~~i~~~i~~~~~~~~~ 364 (365)
T 1h7s_A 330 ECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFD 364 (365)
T ss_dssp GGEEEC------CEEETTHHHHHHHHHHHHHHHHC
T ss_pred HHcceEECCCcCEEEEcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999985
No 4
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=100.00 E-value=5.2e-49 Score=401.21 Aligned_cols=187 Identities=22% Similarity=0.409 Sum_probs=158.0
Q ss_pred cCCCCcEEEEEEeCcEEEEEeCCcEEEEehhhHHHHHHHHHHhcc---cCCCcccccccceeecCHHHHHHHHHHHHHHH
Q 041466 612 EDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLSQS---TVLNQQPLLRPLKLDLTPEEEVVASMHMDIIR 688 (824)
Q Consensus 612 ~~~~~~~vigQ~~~~fIl~~~~~~L~iIDQHAAhERi~yE~l~~~---~~~~sQ~Ll~P~~l~Ls~~e~~~l~~~~~~L~ 688 (824)
.+|+.+++||||+++|||++.+++|||||||||||||+||+|++. ..+.+|+|++|+.|+|++.|..+++++.+.|+
T Consensus 4 ~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERi~yE~l~~~~~~~~~~sQ~LL~P~~l~ls~~e~~~l~~~~~~l~ 83 (197)
T 3kdg_A 4 DRVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTFHYSTNEALIIEQHKQELE 83 (197)
T ss_dssp CCCCCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEEEEECCTTHHHHHHHTHHHHH
T ss_pred ccCCCCeEEEEEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHccCCCCccccCCCEEEecCHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999986 35789999999999999999999999999999
Q ss_pred HcCeEEEecCCCCCccEEEEEeeCCCccccCChhhHHHHHHHHHhccCCcccccccccCCCCCCC-hHHHHHHHHHHHhh
Q 041466 689 KNGFSLEEDPHALAGLRFRLKAVPFSKKITFGVEDVKDLISTLADNQGECSIISSYKMDTADSVC-PSRVRAMLASRACR 767 (824)
Q Consensus 689 ~~Gf~~e~~~~~~~~~~v~l~~vP~~~~~~l~~~d~~ell~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~las~ACr 767 (824)
+|||+++.+ |++++.|++||.++ ...+..++|.+|++.... .+... .....++++++|||
T Consensus 84 ~~Gf~~e~~----g~~~~~v~~vP~~l----~~~~~~~~l~ell~~l~~-----------~~~~~~~~~~~~~~~~~ACr 144 (197)
T 3kdg_A 84 SVGVFLESF----GSNSYIVRCHPAWF----PKGEEAELIEEIIQQVLD-----------SKNIDIKKLREEAAIMMSCK 144 (197)
T ss_dssp HTTCCCEEC----STTEEEEEEEETTS----CTTCHHHHHHHHHHHHHH-----------HSSCCHHHHHHHHHHHHHHC
T ss_pred hCCCEEEEC----CCCEEEEEecCccc----ccccHHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHhhH
Confidence 999999995 47899999999984 444555555555443221 01122 34456789999999
Q ss_pred cccccCCCCCHHHHHHHHHHHhccCCCCCCCCCCceeEEcc--cchhhhhhc
Q 041466 768 SSIMIGDALGRNEMQKILEHLADLNSPWNCPHGRPTMRHLV--DLTTIRKNI 817 (824)
Q Consensus 768 ~AIk~Gd~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~~~L~--~l~~~~~~~ 817 (824)
+|||+|+.||.+||++||++|++|++||+||||||||++|+ +|+++|+|+
T Consensus 145 ~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~l~~~elek~F~R~ 196 (197)
T 3kdg_A 145 GSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHHSTYEMEKMFKRV 196 (197)
T ss_dssp C----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEEEEHHHHHHHHCSC
T ss_pred hhccCCCCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEEeCHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999998 888888875
No 5
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.7e-48 Score=402.49 Aligned_cols=188 Identities=26% Similarity=0.387 Sum_probs=165.5
Q ss_pred cCCCCcEEEEEEeCcEEEEEeCCcEEEEehhhHHHHHHHHHHhcc----cCCCcccccccceeecCHHHHHHHHHHHHHH
Q 041466 612 EDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLSQS----TVLNQQPLLRPLKLDLTPEEEVVASMHMDII 687 (824)
Q Consensus 612 ~~~~~~~vigQ~~~~fIl~~~~~~L~iIDQHAAhERi~yE~l~~~----~~~~sQ~Ll~P~~l~Ls~~e~~~l~~~~~~L 687 (824)
..++.+++||||+++|||++.+++|||||||||||||+||+|+++ ..+.+|+||+|+.|+|++.|..+++++.+.|
T Consensus 25 ~~~p~g~vigQv~~~YIL~e~~~gL~lIDQHAAhERi~yE~l~~~~~~~~~~~sQ~LL~P~~l~Ls~~e~~~l~~~~~~L 104 (220)
T 3ncv_A 25 ELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALADHAETL 104 (220)
T ss_dssp CCCTTCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEEECCHHHHHHHHHHHHHH
T ss_pred CCCCCceeeeeEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHhccCCccceeeCCCeEEEcCHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999984 3478999999999999999999999999999
Q ss_pred HHcCeEEEecCCCCCccEEEEEeeCCCccccCChhhHHHHHHHHHhccCCcccccccccCCCC-CCChHHHHHHHHHHHh
Q 041466 688 RKNGFSLEEDPHALAGLRFRLKAVPFSKKITFGVEDVKDLISTLADNQGECSIISSYKMDTAD-SVCPSRVRAMLASRAC 766 (824)
Q Consensus 688 ~~~Gf~~e~~~~~~~~~~v~l~~vP~~~~~~l~~~d~~ell~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~las~AC 766 (824)
++|||+++.+ |+++|.|++||.+ |+..++.++|.+|++..... +. ...+..++++++++||
T Consensus 105 ~~lGf~ie~f----g~~~v~V~~vP~~----l~~~d~~~ll~~ll~~l~~~----------~~~~~~~~~~~~~~as~AC 166 (220)
T 3ncv_A 105 AGFGLELSDM----GGNTLAVRAAPVM----LGKSDVVSLARDVLGELAQV----------GSSQTIASHENRILATMSC 166 (220)
T ss_dssp HHTTCEEECC----STTEEEEEEEETT----SCCSCHHHHHHHHHHHHTTC----------C-----CTTHHHHHHHHTT
T ss_pred HhCCCEEEEC----CCCEEEEEEcCcc----cCCCCHHHHHHHHHHHHHhc----------CCCcchHHHHHHHHHHHHH
Confidence 9999999985 5789999999997 66778888888888765420 11 1125567899999999
Q ss_pred hcccccCCCCCHHHHHHHHHHHhccCCCCCCCCCCceeEEcc--cchhhhhhc
Q 041466 767 RSSIMIGDALGRNEMQKILEHLADLNSPWNCPHGRPTMRHLV--DLTTIRKNI 817 (824)
Q Consensus 767 r~AIk~Gd~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~~~L~--~l~~~~~~~ 817 (824)
|+|||+|+.||.+||++||++|++|++||+||||||||++|+ +|+++|+|.
T Consensus 167 r~AIk~g~~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~i~ls~~eLek~F~R~ 219 (220)
T 3ncv_A 167 HGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDTLFLRG 219 (220)
T ss_dssp CSSSCSSCCCCHHHHHHHHHHHHTSTTTTBCTTSCBSEEEEEHHHHHHTC---
T ss_pred HhhhhcCCCCCHHHHHHHHHHHHhCCCCCcCCCCCcEEEEeCHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999998 888888875
No 6
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=100.00 E-value=4.4e-48 Score=424.94 Aligned_cols=224 Identities=23% Similarity=0.381 Sum_probs=208.9
Q ss_pred cccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCCceEEEEEEeCCeeeEEEEeCCCCcCccchhhhHH---------
Q 041466 12 IRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGATSIEIALKEYGEEWFQVVDNGCGISPNNFKVRAV--------- 82 (824)
Q Consensus 12 I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgAt~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l~~--------- 82 (824)
|+.||++++++|||||||++|.+||+|||+|||||||+.|.|.+..+|...|+|.|||+||+++|++.++.
T Consensus 5 I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~ 84 (333)
T 1b63_A 5 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKIAS 84 (333)
T ss_dssp CCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCS
T ss_pred ceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhcccccCccc
Confidence 99999999999999999999999999999999999999999999998888999999999999999876653
Q ss_pred --------------------------------------------------------------------------------
Q 041466 83 -------------------------------------------------------------------------------- 82 (824)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (824)
T Consensus 85 ~~d~~~~~~~G~~G~gl~si~~vs~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~GT~V~v~~Lf~n~P~r~kflk 164 (333)
T 1b63_A 85 LDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLR 164 (333)
T ss_dssp HHHHHTCCSSCCSSCHHHHHHTTSEEEEEEECTTCSSEEEEEEETTTTEEEEEEECCCSEEEEEEESTTTTCHHHHHTCC
T ss_pred cchhhhccccCccccchhhhhcCCcEEEEEecCCCceEEEEEEcCCcceEeeecccCCCCCEEEEecccccchhhhhhhc
Confidence
Q ss_pred ----------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCC---CCCHHHhHhhhccccccccceeeEeecCCceEE
Q 041466 83 ----------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQG---SSSLKDNIITVFGMNIYNCLEPVAICKSDSCKV 149 (824)
Q Consensus 83 ----------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~---~~~~~~~i~~v~G~~~~~~l~~i~~~~~~~~~i 149 (824)
++|++||+++|+|+|+|++++ +.++.+++ .+++.+++..+||..+...+++++.. .+.++|
T Consensus 165 ~~~~e~~~i~~~~~~~al~~p~v~~~l~~ng-----~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~li~i~~~-~~~~~v 238 (333)
T 1b63_A 165 TEKTEFNHIDEIIRRIALARFDVTINLSHNG-----KIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQ-HGDLTL 238 (333)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTCEEEEEETT-----EEEEEECCCCTTCCTHHHHHHHHCHHHHHHEEEEEEE-ETTEEE
T ss_pred cHHHHHHHHHHHHHHHhccCCCcEEEEEECC-----EEEEecCCCCCCchHHHHHHHHhChhhHhheEEEEec-CCCEEE
Confidence 788999999999999999975 45555554 45789999999999999999999988 778999
Q ss_pred EEEEeCCCCCCCCCC-CCceEEEEcCcccCChHHHHHHHHHhhhccCC-CCcEEEEEEEcCCCceeeeccCCCCEEEeCC
Q 041466 150 EGFLSKPGQGSGRNL-GDRQYFFVNDRPVDLPKVSKLVNELYKGANSR-QYPIAIMNFIVPTRACDVNVTPDKRKVFFSD 227 (824)
Q Consensus 150 ~G~is~p~~~~~r~~-~~~q~~fvN~R~v~~~~l~~ai~~~y~~~~~~-~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~ 227 (824)
+||++.|.. +|+. +++||+|||||||.++.|.+||+++|+.++++ +||+++|+|+|||..|||||||+|+||+|++
T Consensus 239 ~G~i~~p~~--~~~~~~~~~~~fvNgR~V~~~~l~~ai~~~y~~~l~~~~~P~~~l~l~~~p~~vDvNvhP~K~ev~f~~ 316 (333)
T 1b63_A 239 RGWVADPNH--TTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQ 316 (333)
T ss_dssp EEEEECGGG--CCTTGGGCEEEEETTEECCCHHHHHHHHHHHHHHSSSCCCCCEEEEEECCGGGEECTTSTTCCCCEETT
T ss_pred EEEEEcCcc--ccCCCCCcEEEEECCEEecCHHHHHHHHHHHHhhccCCCCcEEEEEEEeCchhccceECCCcCEEEeCC
Confidence 999999986 5777 89999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHh
Q 041466 228 ECSILHALREGLQEIY 243 (824)
Q Consensus 228 e~~v~~~i~~~l~~~l 243 (824)
|+.|+++|+++|+++|
T Consensus 317 ~~~v~~~i~~~i~~~l 332 (333)
T 1b63_A 317 SRLVHDFIYQGVLSVL 332 (333)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999987
No 7
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=100.00 E-value=2.3e-38 Score=320.50 Aligned_cols=175 Identities=19% Similarity=0.238 Sum_probs=151.1
Q ss_pred CCCCcEEEEEEeCcEEEEEeCCcEEEEehhhHHHHHHHHHHhcc--cCCCcccccccceeecCHHHHHHHHHHHHHHHHc
Q 041466 613 DFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLSQS--TVLNQQPLLRPLKLDLTPEEEVVASMHMDIIRKN 690 (824)
Q Consensus 613 ~~~~~~vigQ~~~~fIl~~~~~~L~iIDQHAAhERi~yE~l~~~--~~~~sQ~Ll~P~~l~Ls~~e~~~l~~~~~~L~~~ 690 (824)
.++.+++||||+++|||++.+++||||||||| |||+||+|++. ..+.+|+|++|+.|+|++.|..+++++.+.|+++
T Consensus 5 ~~~~~~vlgQ~~~~yIl~~~~~~L~lIDQHAA-ERi~yE~l~~~~~~~~~~Q~LL~P~~l~ls~~e~~~l~~~~~~l~~~ 83 (188)
T 1x9z_A 5 SQSFGRVLTIVHSDCALLERDGNISLLSLPVA-ERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEEKSALEKAQSALAEL 83 (188)
T ss_dssp -CCCCEEEEEETTTEEEEEETTEEEEEEHHHH-HHHHHHHHHSBTTBCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHT
T ss_pred cCCCceeeeeecCEEEEEEeCCCEEEEeHHHH-HHHHHHHHHHhcCCCCCcccCCCCEEEEeCHHHHHHHHHHHHHHHhC
Confidence 35679999999999999999999999999999 99999999986 3478999999999999999999999999999999
Q ss_pred CeEEEecCCCCCccEEEEEeeCCCccccCChhhHHHHHHHHHhccCCcccccccccCCCCCCChHHHHHHHHHHHhhccc
Q 041466 691 GFSLEEDPHALAGLRFRLKAVPFSKKITFGVEDVKDLISTLADNQGECSIISSYKMDTADSVCPSRVRAMLASRACRSSI 770 (824)
Q Consensus 691 Gf~~e~~~~~~~~~~v~l~~vP~~~~~~l~~~d~~ell~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~ACr~AI 770 (824)
||+++.+ |++ +.|++||.+ |+..++.++|.++++.... +... ..+++++++|||+ |
T Consensus 84 Gf~~e~~----g~~-~~v~~vP~~----l~~~~~~~li~~ll~~l~~------------~~~~--~~~~~~~~~AC~~-i 139 (188)
T 1x9z_A 84 GIDFQSD----AQH-VTIRAVPLP----LRQQNLQILIPELIGYLAK------------QSVF--EPGNIAQWIARNL-M 139 (188)
T ss_dssp TCEEEEC----SSE-EEEEEEEGG----GTTSCHHHHHHHHHHHHTT------------CSSC--CHHHHHHHHHHTT-S
T ss_pred CcEEEEc----CCc-EEEEecCch----hcccCHHHHHHHHHHHHHh------------CCcc--hHHHHHHHHHHhh-C
Confidence 9999995 456 999999998 6677888888888876431 1111 1377999999999 9
Q ss_pred ccCCCCCHHHHHHHHHHHhccCCCCCCCCCCcee----EEcccchhhhhhc
Q 041466 771 MIGDALGRNEMQKILEHLADLNSPWNCPHGRPTM----RHLVDLTTIRKNI 817 (824)
Q Consensus 771 k~Gd~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~----~~L~~l~~~~~~~ 817 (824)
|+|+.|+.+||++||++|++| |||||||| +...++......+
T Consensus 140 k~g~~Ls~~em~~Ll~~L~~~-----CpHGRPt~~~~ll~~id~~~~l~~~ 185 (188)
T 1x9z_A 140 SEHAQWSMAQAITLLADVERL-----CPQLVKTPPGGLLQSVDLHPAIKAL 185 (188)
T ss_dssp CCCCSCCHHHHHHHHHHHHHH-----CHHHHHSCCTTTEEECCCHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHhH-----CCCCCcCcchhhceeecHHHHHHHH
Confidence 999999999999999999999 99999998 5555776655443
No 8
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.73 E-value=6.1e-17 Score=179.20 Aligned_cols=200 Identities=13% Similarity=0.092 Sum_probs=152.9
Q ss_pred cCHHHHHHHHHHhhccc----CCceEEEEEEeCCeeeEEEEeCCCCcCc------------cc------hh---hhHH--
Q 041466 30 KDLSSAVKELVENSLDA----GATSIEIALKEYGEEWFQVVDNGCGISP------------NN------FK---VRAV-- 82 (824)
Q Consensus 30 ~~p~svVKELvENSlDA----gAt~I~V~i~~~G~~~I~V~DnG~GI~~------------~d------~~---~l~~-- 82 (824)
..|+++||||||||||| +|++|+|.|..+| +|+|.|||+||+. ++ +. .++.
T Consensus 29 ~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g--~I~V~DnGrGIp~e~v~~lhagsKf~~~~~~~~y~vsGGls~vn 106 (369)
T 3cwv_A 29 YGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG--SIALFCTSRTVTAENLVRVATGAGFLGRPPGDGWGWDSMLVVSL 106 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEEEESSCCHHHHHHHHTTTTGGGSSCCCSTTTTSSHHHHH
T ss_pred chHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCC--EEEEEECCCCcCHhHeeeeecCCCcCCCcccccccccCHHHHHH
Confidence 47899999999999998 8999999999888 8999999999983 11 00 0111
Q ss_pred ---------------------------------------------------------------------HHHHHHHhhCC
Q 041466 83 ---------------------------------------------------------------------FLCQAYALIAK 93 (824)
Q Consensus 83 ---------------------------------------------------------------------~~l~~~al~~p 93 (824)
+.|++||+++|
T Consensus 107 alSs~l~v~t~r~g~~~~~~~~~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~Pd~~~F~~~~~e~~~l~~rl~~lA~lnp 186 (369)
T 3cwv_A 107 ALSSRYQVDIWADGRQWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFVPDATIFEVLAFDRARLSRRCNELAALAP 186 (369)
T ss_dssp HTEEEEEEEEEETTEEEEEEEETTEECTTCEEESSCCCCSSCCSEEEEEEEEECTTTCSCCCCCHHHHHHHHHHHHHHST
T ss_pred HhhceEEEEEEECCCEEEEEEeCCcccccccccCCceEecccCCCCCEEEEEECHHHhCCccccHHHHHHHHHHHcCcCC
Confidence 89999999999
Q ss_pred ceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhcccc--ccccceeeEeecCCceEEEEEEeCCCCCCCCCCCCceEEE
Q 041466 94 GVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMN--IYNCLEPVAICKSDSCKVEGFLSKPGQGSGRNLGDRQYFF 171 (824)
Q Consensus 94 ~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~--~~~~l~~i~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~f 171 (824)
+|+|+|.+... .++.+|.++| .+.+.+..++|.+ +...++.++.. .+.+.++|++..| ++.+..||.|
T Consensus 187 gv~i~l~d~~~--~~~~~f~~~g--Gl~~~v~~l~~~~~~~~~~~i~~~~~-~~~i~ve~a~~~~-----~~~~~~~~sF 256 (369)
T 3cwv_A 187 GLRVSFADLQR--GERTLWHLPG--GVAQWAHVLTEARPQLHPEPVVFDFT-WDGLRVQCALQWC-----EDEDSTLLSF 256 (369)
T ss_dssp TCEEEEEETTT--TEEEEEECTT--HHHHHHHHHHTTSCBSSSSCEEEEEE-ETTEEEEEEEEEB-----SSSCCEEEEE
T ss_pred CcEEEEEeCCC--CeeEEEEeCc--hHHHHHHHHhcCCcccCCCcEEEEEe-cCCEEEEEEEEec-----CCCCeeEEEE
Confidence 99999998642 2356788877 3999999999976 45578888877 6779999999976 3456789999
Q ss_pred EcCcccCC-----hHHHHHHHHHhhhccCCC-----------CcEEEEEEEcCCCc--eeeeccCCCCEEEeCCh-hHHH
Q 041466 172 VNDRPVDL-----PKVSKLVNELYKGANSRQ-----------YPIAIMNFIVPTRA--CDVNVTPDKRKVFFSDE-CSIL 232 (824)
Q Consensus 172 vN~R~v~~-----~~l~~ai~~~y~~~~~~~-----------~P~~~L~i~~~p~~--vDVNVhP~K~eV~f~~e-~~v~ 232 (824)
||||++.. ..+..||.++|+.++.+. .=.+||++.+|.-. .+ -.+|...-=..- ..|-
T Consensus 257 VN~i~t~~GGTH~~g~~~al~~a~~~~~k~~~~~l~~~dvregl~avisvk~~~P~~~Fe---gQTK~kL~~~e~~~~v~ 333 (369)
T 3cwv_A 257 ANAVRTVRHGAHVKGVTQALRGALAKLSGETRGAFPWARVAQGLTAIVAVSGPRRQMAFA---GPTKELLAIPGLEEAIR 333 (369)
T ss_dssp ETTEECTTCBHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTEEEEEEEECCGGGCCBS---STTCCSBCCTTHHHHHH
T ss_pred ECCEEeCCCCCHHHHHHHHHHHHHHHHHhhcCCCcCHHHHhhccEEEEEeccCCcchhcc---ccccchhcCHHHHHHHH
Confidence 99999999 889999999999987321 12788888886554 44 356655433322 3344
Q ss_pred HHHHHHHHHHhc
Q 041466 233 HALREGLQEIYS 244 (824)
Q Consensus 233 ~~i~~~l~~~l~ 244 (824)
..+.+.|..+|.
T Consensus 334 ~~v~~~l~~~l~ 345 (369)
T 3cwv_A 334 KQLQPLFIELLR 345 (369)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556666767764
No 9
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.70 E-value=6.1e-16 Score=172.49 Aligned_cols=222 Identities=14% Similarity=0.096 Sum_probs=165.5
Q ss_pred CCCcccCChhHHHhhhcCCcccCH--HHHHHHHHHhhccc---C-CceEEEEEEeCCeeeEEEEeCCCCcCccc------
Q 041466 9 SPTIRPINKGVVHRICAGQVIKDL--SSAVKELVENSLDA---G-ATSIEIALKEYGEEWFQVVDNGCGISPNN------ 76 (824)
Q Consensus 9 ~~~I~~L~~~~v~~IaageVi~~p--~svVKELvENSlDA---g-At~I~V~i~~~G~~~I~V~DnG~GI~~~d------ 76 (824)
...|+.|..--.-+.+-|-.|-+. .++|||||+||||| | |+.|.|.|..+| +|+|.|||+||+.++
T Consensus 7 ~~~i~~L~gle~vr~RPgmYiGs~~~~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g--~I~V~DnG~GIp~~~~~~~~~ 84 (390)
T 1s16_A 7 ADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIHPEEGV 84 (390)
T ss_dssp GGGCEECCTTHHHHHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCTTTCS
T ss_pred HHHcEEcchhHHHhhCCceeecCCcHHHHHHHHHHHHHHHHhcCCCCEEEEEEecCC--EEEEEECCCCcCcccccccCc
Confidence 346999998888889999999654 99999999999999 5 999999999887 799999999999998
Q ss_pred --hhhhHH------------------------------------------------------------------------
Q 041466 77 --FKVRAV------------------------------------------------------------------------ 82 (824)
Q Consensus 77 --~~~l~~------------------------------------------------------------------------ 82 (824)
++.++.
T Consensus 85 ~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~ 164 (390)
T 1s16_A 85 PAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTS 164 (390)
T ss_dssp BHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECCTTCCEEE
T ss_pred chhhheeeeecccCCcCCCcccccCCccccchHHHHHhhcccEEEEEECCcEEEEEEeCCcccccceecccccCCCCceE
Confidence 443332
Q ss_pred ---------------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhcccc--ccccceee
Q 041466 83 ---------------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMN--IYNCLEPV 139 (824)
Q Consensus 83 ---------------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~--~~~~l~~i 139 (824)
+.|++||+.+|+|+|.|.+... . ++..|.++| .+.+.+..++|.+ +...++.+
T Consensus 165 V~f~Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~-~-~~~~f~~~g--Gl~~~v~~l~~~~~~~~~~~i~~ 240 (390)
T 1s16_A 165 VHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN-N-TEQRWCYQD--GLNDYLAEAVNGLPTLPEKPFIG 240 (390)
T ss_dssp EEEEECGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTT-T-EEEEECCSS--CHHHHHHHHHTTSCCEEEEEEEE
T ss_pred EEEEECccccCcccccHHHHHHHHHHHHhcCCCcEEEEEeCCC-c-eeEEEEcCC--cHHHHHHHHhCCCcccCCCcEEE
Confidence 8999999999999999998642 2 346787776 3999999999863 34467778
Q ss_pred EeecCCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCCh---------HHHHHHHHHhhhcc-CC-----------CC
Q 041466 140 AICKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLP---------KVSKLVNELYKGAN-SR-----------QY 198 (824)
Q Consensus 140 ~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~---------~l~~ai~~~y~~~~-~~-----------~~ 198 (824)
+.+ .+.+.++|++..|. ++.+..||.|||+|++... .|.++|++..+... .+ ..
T Consensus 241 ~~~-~~~~~ve~a~~~~~----~~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k~~~~l~~~dvreg 315 (390)
T 1s16_A 241 NFA-GDTEAVDWALLWLP----EGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDR 315 (390)
T ss_dssp EEE-CSSEEEEEEEEECT----TCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCTTCCCCHHHHHTT
T ss_pred EEe-eCCEEEEEEEEecc----CCCCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCccCCccCHHHHhhc
Confidence 777 67799999999863 4556789999999999973 46666665544321 11 12
Q ss_pred cEEEEEEEcCCCceeeeccCCCCEEEeCCh-hHHHHHHHHHHHHHhc
Q 041466 199 PIAIMNFIVPTRACDVNVTPDKRKVFFSDE-CSILHALREGLQEIYS 244 (824)
Q Consensus 199 P~~~L~i~~~p~~vDVNVhP~K~eV~f~~e-~~v~~~i~~~l~~~l~ 244 (824)
=.+||++.+|.-..+ -.+|...-=..- ..|-..+.+.+..+|.
T Consensus 316 l~avisvki~~P~Fe---gQTK~kL~~~e~~~~v~~~v~~~l~~~l~ 359 (390)
T 1s16_A 316 CAYVLSVKMQDPQFA---GQTKERLSSRQCAAFVSGVVKDAFILWLN 359 (390)
T ss_dssp EEEEEEEEESSCCBS---STTCCCBCCTHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeecCCCCcc---ccccchhcChhHHHHHHHHHHHHHHHHHH
Confidence 278899988766655 356655332221 2333455566666663
No 10
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.68 E-value=2.4e-16 Score=175.65 Aligned_cols=220 Identities=20% Similarity=0.219 Sum_probs=163.6
Q ss_pred CCcccCChhHHHhhhcCCccc------CHHHHHHHHHHhhccc---C-CceEEEEEEeCCeeeEEEEeCCCCcCccchhh
Q 041466 10 PTIRPINKGVVHRICAGQVIK------DLSSAVKELVENSLDA---G-ATSIEIALKEYGEEWFQVVDNGCGISPNNFKV 79 (824)
Q Consensus 10 ~~I~~L~~~~v~~IaageVi~------~p~svVKELvENSlDA---g-At~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~ 79 (824)
..|+.|..--.-+.+-|..|- .|.++|||||+||||| | |++|+|.|..+| +|+|.|||+||+.++.+.
T Consensus 7 ~~i~~L~gle~vrkRPgmYiGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g--~I~V~DnG~GIp~~~~~~ 84 (391)
T 1ei1_A 7 SSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIHPE 84 (391)
T ss_dssp GGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS--CEEEEECSSCCCCSBCTT
T ss_pred HHCEECchhHHHHcCCCeEECCCCCCcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCC--EEEEEECCCCcccCcccc
Confidence 468889888888888888883 7999999999999999 6 999999999887 899999999999998421
Q ss_pred -------hHH----------------------------------------------------------------------
Q 041466 80 -------RAV---------------------------------------------------------------------- 82 (824)
Q Consensus 80 -------l~~---------------------------------------------------------------------- 82 (824)
+++
T Consensus 85 ~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~l~~~~~~~~~GT 164 (391)
T 1ei1_A 85 EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGT 164 (391)
T ss_dssp TSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEECSCCEE
T ss_pred cCcchHHHhheeccccCCcCCCcccccCCccccchHHHHHhcCeEEEEEEeCCcEEEEEEcCCcccccceeccCcCCCcc
Confidence 222
Q ss_pred -----------------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhcccc--ccccce
Q 041466 83 -----------------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMN--IYNCLE 137 (824)
Q Consensus 83 -----------------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~--~~~~l~ 137 (824)
+.|+++|+.+|+|+|.|.+... .++..|..+| .+.+.+..+++.+ +...++
T Consensus 165 ~V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~--~~~~~f~~~g--Gl~~~v~~l~~~~~~~~~~~i 240 (391)
T 1ei1_A 165 MVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRD--GKEDHFHYEG--GIKAFVEYLNKNKTPIHPNIF 240 (391)
T ss_dssp EEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTT--CCEEEECCCS--HHHHHHHHHHHTSCBSSSCCE
T ss_pred EEEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEcCCC--cceEEEEcCc--hHHHHHHHHcCCCcccccccE
Confidence 7899999999999999998642 2356787776 3999999999866 445677
Q ss_pred eeEeecCCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCCh---------HHHHHHHHHhhhcc--C-----------
Q 041466 138 PVAICKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLP---------KVSKLVNELYKGAN--S----------- 195 (824)
Q Consensus 138 ~i~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~---------~l~~ai~~~y~~~~--~----------- 195 (824)
.++.. .+.+.|+|++..|. +....||.|||+|++... .|.++|++..+... .
T Consensus 241 ~~~~~-~~~i~veva~~~~~-----~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~l~k~~~~~~~~~dv 314 (391)
T 1ei1_A 241 YFSTE-KDGIGVEVALQWND-----GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDA 314 (391)
T ss_dssp EEEEE-ETTEEEEEEEEEBS-----SCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCCCCCHHHH
T ss_pred EEEEe-cCCEEEEEEEEccC-----CCCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhCcccccCCccCHHHH
Confidence 88777 66799999999763 445679999999999986 46677766544211 1
Q ss_pred CCCcEEEEEEEcCCCceeeeccCCCCEEEeCC-hhHHHHHHHHHHHHHhc
Q 041466 196 RQYPIAIMNFIVPTRACDVNVTPDKRKVFFSD-ECSILHALREGLQEIYS 244 (824)
Q Consensus 196 ~~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~-e~~v~~~i~~~l~~~l~ 244 (824)
+..=.+||++.+|.-..+ -.+|...-=.. ...|-..+.+.|..+|.
T Consensus 315 regl~avisvki~~P~Fe---gQTK~kL~~~e~~~~v~~~v~~~l~~~l~ 361 (391)
T 1ei1_A 315 REGLIAVVSVKVPDPKFS---SQTKDKLVSSEVKSAVEQQMNELLAEYLL 361 (391)
T ss_dssp TTTEEEEEEEECSSCCBS---STTCCSBCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccEEEEEEecCCCCcC---CcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 133478999998876655 35555432111 12233444555555553
No 11
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.64 E-value=1.7e-16 Score=185.45 Aligned_cols=202 Identities=14% Similarity=0.239 Sum_probs=142.9
Q ss_pred CcccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccC----------------C--ceEEEEEEeCCeeeEEEEeCCCCc
Q 041466 11 TIRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAG----------------A--TSIEIALKEYGEEWFQVVDNGCGI 72 (824)
Q Consensus 11 ~I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAg----------------A--t~I~V~i~~~G~~~I~V~DnG~GI 72 (824)
.|+.|-.-+++.|-+ +|.++|+|||+||+||+ | ..|.|.+..+| ..|+|.|||+||
T Consensus 12 ei~~Ll~ll~~~lYs-----n~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~-~~I~I~DnGiGM 85 (624)
T 2ioq_A 12 EVKQLLHLMIHSLYS-----NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGM 85 (624)
T ss_dssp ---CCHHHHHHHHSS-----CTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT-TEEEEEECSCCC
T ss_pred cHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCC-cEEEEEECCCCC
Confidence 366676667766655 78999999999999998 6 46788776655 689999999999
Q ss_pred Cccchhhh-H------------------H---------------------------------------------------
Q 041466 73 SPNNFKVR-A------------------V--------------------------------------------------- 82 (824)
Q Consensus 73 ~~~d~~~l-~------------------~--------------------------------------------------- 82 (824)
+++|+... + .
T Consensus 86 t~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~i~ 165 (624)
T 2ioq_A 86 TRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVA 165 (624)
T ss_dssp CHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCCEEE
T ss_pred CHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeEEEE
Confidence 99996421 1 0
Q ss_pred -----------------------------HHHHHHH--hhCCceEE--------------EEEEcCCCceeeEEEEcCCC
Q 041466 83 -----------------------------FLCQAYA--LIAKGVRF--------------VCTNTTGKNVKSVVLKTQGS 117 (824)
Q Consensus 83 -----------------------------~~l~~~a--l~~p~v~f--------------~l~~~~~~~~~~~~~~t~~~ 117 (824)
++|++|| +.+| |.| .+.|++ +.+|.++++
T Consensus 166 ~~~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~-----~~lw~~~~~ 239 (624)
T 2ioq_A 166 DITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKA-----QALWTRNKS 239 (624)
T ss_dssp EECCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSC-EEEEEEEECSSCEEEEEEECCCC-----SCTTTSCTT
T ss_pred ECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCC-----ccceEecCc
Confidence 8999999 9999 999 344433 345655554
Q ss_pred CCHHH-hHhhhccc---cccccceeeEeecCCceEEEEEEeCCCCC----CCCCCCCceEEEEcCcccCChHHHHHHHHH
Q 041466 118 SSLKD-NIITVFGM---NIYNCLEPVAICKSDSCKVEGFLSKPGQG----SGRNLGDRQYFFVNDRPVDLPKVSKLVNEL 189 (824)
Q Consensus 118 ~~~~~-~i~~v~G~---~~~~~l~~i~~~~~~~~~i~G~is~p~~~----~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~ 189 (824)
++.+ ....+|+. .....|..+.+.....+.++|++..|... ..|..+++|++|||||+|.+..
T Consensus 240 -~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~d~~-------- 310 (624)
T 2ioq_A 240 -EITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDA-------- 310 (624)
T ss_dssp -TCCHHHHHHHHHHHHTCCSCCSCCEEEEEESSSCEEEEEECCSSCCGGGSSSSCCCCEEEEESSCEEEEEE--------
T ss_pred -cchHHHHHHHHHhhccchhcCeEEEEecccceEEEEEEEEeCCcCccchhhhcccCCeEEEECCEEeecch--------
Confidence 4544 66666665 55667888887744468999999999732 1377889999999999999876
Q ss_pred hhhccCCCCcEEEEEEEcCCCceeeeccCCCCEEEeCChhHHHHHHHHHHHH
Q 041466 190 YKGANSRQYPIAIMNFIVPTRACDVNVTPDKRKVFFSDECSILHALREGLQE 241 (824)
Q Consensus 190 y~~~~~~~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~e~~v~~~i~~~l~~ 241 (824)
+.++|. | +.||...|||..+||||. ||.+ .++.++..|++.|.+
T Consensus 311 -~~llP~-~-l~fv~gvVDs~dl~lNVS---RE~L--Q~~~~l~~I~~~l~k 354 (624)
T 2ioq_A 311 -EQFMPN-Y-LRFVRGLIDSSDLPLNVS---REIL--QDSTVTRNLRNALTK 354 (624)
T ss_dssp -CSSSCT-T-STTCEEEEEESSSCTTCC---HHHH--HHSSHHHHHHHHHHH
T ss_pred -hccchh-h-hhhEEEEECHhhCCCccC---chhh--hhhHHHHHHHHHHHH
Confidence 677776 1 113333499999999993 6543 233455555554433
No 12
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.64 E-value=9.1e-17 Score=185.59 Aligned_cols=199 Identities=14% Similarity=0.210 Sum_probs=143.1
Q ss_pred cccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccC----------------C--ceEEEEEEeCCeeeEEEEeCCCCcC
Q 041466 12 IRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAG----------------A--TSIEIALKEYGEEWFQVVDNGCGIS 73 (824)
Q Consensus 12 I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAg----------------A--t~I~V~i~~~G~~~I~V~DnG~GI~ 73 (824)
|+.|-+-+++.|. .+|.++|+|||+||+||+ | ..|.|.+..+| ..|+|.|||+||+
T Consensus 13 i~~Ll~ll~~~lY-----sn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~I~I~DnGiGMt 86 (559)
T 1y4s_A 13 VKQLLHLMIHSLY-----SNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGMT 86 (559)
T ss_dssp HHHHHHHHHHHTG-----GGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT-TEEEEEECSSCCC
T ss_pred HHHHHHHHHHhcC-----CChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC-cEEEEEECCCCCC
Confidence 5555555555544 688999999999999999 5 47888877666 6899999999999
Q ss_pred ccchhhhH-------------------H----------------------------------------------------
Q 041466 74 PNNFKVRA-------------------V---------------------------------------------------- 82 (824)
Q Consensus 74 ~~d~~~l~-------------------~---------------------------------------------------- 82 (824)
++|+.... .
T Consensus 87 ~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~i~~ 166 (559)
T 1y4s_A 87 RDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVAD 166 (559)
T ss_dssp HHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEEEEE
T ss_pred HHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCeeEEeE
Confidence 99964211 0
Q ss_pred ----------------------------HHHHHHH--hhCCceEE--------------EEEEcCCCceeeEEEEcCCCC
Q 041466 83 ----------------------------FLCQAYA--LIAKGVRF--------------VCTNTTGKNVKSVVLKTQGSS 118 (824)
Q Consensus 83 ----------------------------~~l~~~a--l~~p~v~f--------------~l~~~~~~~~~~~~~~t~~~~ 118 (824)
++|++|| +.+| |.| .+.|+. +.+|.++++
T Consensus 167 ~~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~-----~~lw~~~~~- 239 (559)
T 1y4s_A 167 ITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKA-----QALWTRNKS- 239 (559)
T ss_dssp ECCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSC-EEEEEEECSTTSCEEEEEECCCC-----CCGGGSCGG-
T ss_pred CCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCC-----ccceecCcc-
Confidence 8999999 9999 999 344433 355655554
Q ss_pred CHHH-hHhhhcc---ccccccceeeEeecCCceEEEEEEeCCCCC----CCCCCCCceEEEEcCcccCChHHHHHHHHHh
Q 041466 119 SLKD-NIITVFG---MNIYNCLEPVAICKSDSCKVEGFLSKPGQG----SGRNLGDRQYFFVNDRPVDLPKVSKLVNELY 190 (824)
Q Consensus 119 ~~~~-~i~~v~G---~~~~~~l~~i~~~~~~~~~i~G~is~p~~~----~~r~~~~~q~~fvN~R~v~~~~l~~ai~~~y 190 (824)
++.+ ....+|+ ......|..+.+...+.+.++|++..|... ..|..++.|++|||||+|.+..
T Consensus 240 ~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~d~~--------- 310 (559)
T 1y4s_A 240 EITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDA--------- 310 (559)
T ss_dssp GCCHHHHHHHHHHHHTCSSCEEEEEEECCCSSSCEEEEEEEESSCCTTCSSSSCCCCEEEEETTEEEEEEE---------
T ss_pred cccHHHHHHHHHhhhhhhhcCeEEEEeccCCceEEEEEEEcCCcCcchhhhhcccCCeEEEEcCEEeecch---------
Confidence 4444 6666776 355677888888733368999999888732 1377889999999999999873
Q ss_pred hhccCCCCcEEEEE--EEcCCCceeeeccCCCCEEEeCChhHHHHHHHHHHHH
Q 041466 191 KGANSRQYPIAIMN--FIVPTRACDVNVTPDKRKVFFSDECSILHALREGLQE 241 (824)
Q Consensus 191 ~~~~~~~~P~~~L~--i~~~p~~vDVNVhP~K~eV~f~~e~~v~~~i~~~l~~ 241 (824)
+.++|. |++| ..||+..+|+||. ||.+ .++.++..|++.|.+
T Consensus 311 ~~llP~----~l~fv~gvVDs~dlplNVS---RE~l--q~~~~l~~I~~~l~k 354 (559)
T 1y4s_A 311 EQFMPN----YLRFVRGLIDSSDLPLNVS---REIL--QDSTVTRNLRNALTK 354 (559)
T ss_dssp GGGSCG----GGTTCEEEEEESSSCTTCC---TTGG--GGCHHHHHHHHHHHH
T ss_pred hhhChH----hHhheeEeeChhhCCCeeC---chhh--hhhHHHHHHHHHHHH
Confidence 677766 2233 3499999999994 6643 344566666655544
No 13
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.55 E-value=6.5e-14 Score=156.37 Aligned_cols=219 Identities=20% Similarity=0.201 Sum_probs=160.3
Q ss_pred CCcccCChhHHHhhhcCCcc-----cCHHHHHHHHHHhhcccC----CceEEEEEEeCCeeeEEEEeCCCCcCccchhh-
Q 041466 10 PTIRPINKGVVHRICAGQVI-----KDLSSAVKELVENSLDAG----ATSIEIALKEYGEEWFQVVDNGCGISPNNFKV- 79 (824)
Q Consensus 10 ~~I~~L~~~~v~~IaageVi-----~~p~svVKELvENSlDAg----At~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~- 79 (824)
..|+.|..--.-+.+.|..| ..+..+|+|||+||||+. ++.|.|.+..+| .|+|.|||.||+.++++.
T Consensus 6 ~~i~~l~~le~vr~rpgmyiGs~~~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~~~--~i~V~DnG~GIp~~~~~~~ 83 (390)
T 1kij_A 6 SAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDG--SLTVEDNGRGIPVDLMPEE 83 (390)
T ss_dssp -CCEECCTTHHHHHCTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSEETTT
T ss_pred HHCEEcchhHHHhcCCCcEEccCCcchHHHHHHHHHHHHHHHhhhCCCCEEEEEEEcCC--EEEEEEcCCCCCHHHhhhc
Confidence 46899998888888999998 667899999999999996 999999998776 899999999999999753
Q ss_pred -------hHH----------------------------------------------------------------------
Q 041466 80 -------RAV---------------------------------------------------------------------- 82 (824)
Q Consensus 80 -------l~~---------------------------------------------------------------------- 82 (824)
++.
T Consensus 84 ~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g~~~~~~~~~G~~~~~~~~~~~~~~~~~G 163 (390)
T 1kij_A 84 GKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTG 163 (390)
T ss_dssp TEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECGGGCCE
T ss_pred cccchhhheeeeeecccccCccccccCCCCCcceeeecccccceEEEEecCCcEEEEEEcCCcccccceeeccccCCCCC
Confidence 321
Q ss_pred -----------------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhcccc--ccccce
Q 041466 83 -----------------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMN--IYNCLE 137 (824)
Q Consensus 83 -----------------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~--~~~~l~ 137 (824)
+.|++||+.+|+|+|+|.+... .++.+|..++ .+.+.+..++|.+ +...++
T Consensus 164 T~V~f~Pd~~~F~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~--~~~~~f~~~~--Gl~~~v~~l~~~~~~~~~~~i 239 (390)
T 1kij_A 164 TRVTFKPDPEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQDRQH--GKEEVFLDKG--GVASFAKALAEGEDLLYEKPF 239 (390)
T ss_dssp EEEEEEECHHHHTTCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGG--TEEEEECCTT--HHHHHHHHHTTTSCBSCSSCE
T ss_pred cEEEEEEChHHhCCccccHHHHHHHHHHhcCcCCCcEEEEEeCCC--cceEEEEcCC--cHHHHHHHHhCCCCcCCCCcE
Confidence 8889999999999999998642 2346787776 3999999999876 445678
Q ss_pred eeEeecCCceEEEEEEeCCCCCCCCCCCCceEEEEcCcccCCh---------HHHHHHHHHhhhc--cCC----------
Q 041466 138 PVAICKSDSCKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLP---------KVSKLVNELYKGA--NSR---------- 196 (824)
Q Consensus 138 ~i~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~---------~l~~ai~~~y~~~--~~~---------- 196 (824)
.++.. .+.+.++|++... ++.+..||.|||+|++... .|.++|++..+.. +.+
T Consensus 240 ~~~~~-~~~i~ve~a~~~~-----~~~~~~~~sFvN~i~t~~GGTH~~g~~~alt~~i~~~~~~~~l~k~~~~~l~~~dv 313 (390)
T 1kij_A 240 LIRGT-HGEVEVEVGFLHT-----QGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDDL 313 (390)
T ss_dssp EEEEE-ETTEEEEEEEEEB-----SSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCSSSCCCCTTTT
T ss_pred EEEee-cCCeEEEEEEEec-----CCCCceEEEEEcCeeeCCCCchhHHHHHHHHHHHHHHHHHhCccccccCCcCHHHH
Confidence 88877 6679999999863 3446789999999999983 3555555544321 111
Q ss_pred -CCcEEEEEEEcCCCceeeeccCCCCEEEeCCh-hHHHHHHHHHHHHHh
Q 041466 197 -QYPIAIMNFIVPTRACDVNVTPDKRKVFFSDE-CSILHALREGLQEIY 243 (824)
Q Consensus 197 -~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~e-~~v~~~i~~~l~~~l 243 (824)
..=.+||++.+|.-..+ -.+|...-=..- ..|-..+.+.+..+|
T Consensus 314 regl~avisvki~~P~Fe---gQTK~kL~~~e~~~~v~~~v~~~l~~~l 359 (390)
T 1kij_A 314 LEGLYAVVSVKLPNPQFE---GQTKGKLLNPEAGTAVGQVVYERLLEIL 359 (390)
T ss_dssp TTTEEEEEEEECSSCCBC---STTCCSBCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcEEEEEeecCCCccc---ccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 22368888888766555 355554321111 223344445555555
No 14
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.55 E-value=4.3e-16 Score=182.62 Aligned_cols=201 Identities=13% Similarity=0.222 Sum_probs=135.5
Q ss_pred cccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccC----------------C--ceEEEEEEeCCeeeEEEEeCCCCcC
Q 041466 12 IRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAG----------------A--TSIEIALKEYGEEWFQVVDNGCGIS 73 (824)
Q Consensus 12 I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAg----------------A--t~I~V~i~~~G~~~I~V~DnG~GI~ 73 (824)
|+.|-+-+++.|.+ ++.++|+|||+||+||+ | ..|.|.+..+| ..|+|.|||+||+
T Consensus 31 i~~Ll~li~~sLYs-----n~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~-~~I~I~DnGiGMt 104 (666)
T 2o1u_A 31 VNRMMKLIINSLYK-----NKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-NLLHVTDTGVGMT 104 (666)
T ss_dssp ---CCSSSTTTTSS-----SCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTT-TEEEEEECSCCCC
T ss_pred HHHHHHHHHHhccC-----CchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCC-CEEEEEECCCCCC
Confidence 66666666665544 77899999999999998 6 46777766655 6899999999999
Q ss_pred ccchhhhH-----------------------H------------------------------------------------
Q 041466 74 PNNFKVRA-----------------------V------------------------------------------------ 82 (824)
Q Consensus 74 ~~d~~~l~-----------------------~------------------------------------------------ 82 (824)
++|+.... .
T Consensus 105 ~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~gg~~ti~~~ 184 (666)
T 2o1u_A 105 REELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIAD 184 (666)
T ss_dssp HHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSCCEEEEC
T ss_pred HHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeCCeEEEEec
Confidence 99863100 1
Q ss_pred ------------------------------HHHHHHH--hhCCceEEE---------------EEEcCCCceeeEEEEcC
Q 041466 83 ------------------------------FLCQAYA--LIAKGVRFV---------------CTNTTGKNVKSVVLKTQ 115 (824)
Q Consensus 83 ------------------------------~~l~~~a--l~~p~v~f~---------------l~~~~~~~~~~~~~~t~ 115 (824)
++|++|| +.+| |.|. +.|+. +.+|..+
T Consensus 185 ~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~P-I~~~~~~~~~~~~~~~~~~~iN~~-----~~lw~~~ 258 (666)
T 2o1u_A 185 PRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFP-IYVWSSKTGGGGKTVWDWELMNDI-----KPIWQRP 258 (666)
T ss_dssp TTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSC-EEEEECC-------CCEEEECSCC-----SCTTTSC
T ss_pred ccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCc-eEEeccccccccccccceEEEecC-----ccccccC
Confidence 7888999 8888 8772 23322 3445555
Q ss_pred CCCCHHH-hHhhhcc---ccccccceeeEeecCCceEEEEEEeCCCCC----CCC---CCCCceEEEEcCcccCChHHHH
Q 041466 116 GSSSLKD-NIITVFG---MNIYNCLEPVAICKSDSCKVEGFLSKPGQG----SGR---NLGDRQYFFVNDRPVDLPKVSK 184 (824)
Q Consensus 116 ~~~~~~~-~i~~v~G---~~~~~~l~~i~~~~~~~~~i~G~is~p~~~----~~r---~~~~~q~~fvN~R~v~~~~l~~ 184 (824)
++ ++.+ .+..+|+ ......|..+.+...+.+.++|++..|... ..| ..++.+++|||||+|.+..
T Consensus 259 ~~-~i~~eey~~fy~~~~~d~~~pl~~ih~~~eg~~~~~gll~iP~~~p~d~~~~~~~~~~~~i~LYVn~vfI~d~~--- 334 (666)
T 2o1u_A 259 SK-EVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDF--- 334 (666)
T ss_dssp TT-TCCHHHHHHHHHHTTCTTSCCSEEEEEEECSSSCEEEEEEECSSCCC------------CEEEEETTEEEESCC---
T ss_pred cc-cccHHHHHHHHhhhccccccCeeEEEecccCcEEEEEEEEcCCCCchhhhhhccccccCCeEEEEcCeEeeCch---
Confidence 44 4444 7777777 455677888887745679999999998732 134 4678999999999999875
Q ss_pred HHHHHhhhccCCCCcEEEEEEEcCCCceeeeccCCCCEEEeCChhHHHHHHHHHHHH
Q 041466 185 LVNELYKGANSRQYPIAIMNFIVPTRACDVNVTPDKRKVFFSDECSILHALREGLQE 241 (824)
Q Consensus 185 ai~~~y~~~~~~~~P~~~L~i~~~p~~vDVNVhP~K~eV~f~~e~~v~~~i~~~l~~ 241 (824)
+.++|. | +.||...|++..+||||. ||.+ .++.++..|++.|.+
T Consensus 335 ------~~llP~-~-l~FvkGvVDs~dLplNVS---RE~L--Q~~~~l~~I~~~l~k 378 (666)
T 2o1u_A 335 ------HDMMPK-Y-LNFVKGVVDSDDLPLNVS---RETL--QQHKLLKVIRKKLVR 378 (666)
T ss_dssp ------CTTSCG-G-GTTCEEEEEESSSCSSSC---HHHH--HTCHHHHHHHHHHHH
T ss_pred ------hhhhHH-H-HHHeeeeeCHhhCCCccc---chhh--ccCHHHHHHHHHHHH
Confidence 566665 1 124444999999999995 6655 334456666655544
No 15
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.32 E-value=2e-12 Score=131.63 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=42.3
Q ss_pred cCHHHHHHHHHHhhccc---C-CceEEEEEEeCCeeeEEEEeCCCCcCccch
Q 041466 30 KDLSSAVKELVENSLDA---G-ATSIEIALKEYGEEWFQVVDNGCGISPNNF 77 (824)
Q Consensus 30 ~~p~svVKELvENSlDA---g-At~I~V~i~~~G~~~I~V~DnG~GI~~~d~ 77 (824)
++|+++||||||||||| | |+.|+|.|..+| +|+|.|||+||+.+++
T Consensus 16 ~~~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~~g--~i~V~DnG~GIp~~~~ 65 (201)
T 3fv5_A 16 TRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIH 65 (201)
T ss_dssp TSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBC
T ss_pred CChhhhhHHHHHHHHHHHhcCCCcEEEEEEeCCC--EEEEEECCCCcCcccc
Confidence 35799999999999999 6 999999999877 7999999999999984
No 16
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.97 E-value=4.5e-08 Score=109.01 Aligned_cols=221 Identities=14% Similarity=0.088 Sum_probs=140.3
Q ss_pred CCcccCChhHHHhhhcCCcc--cCHHHHHHHHHHhhccc----CCceEEEEEEeCCeeeEEEEeCCCCcCccch------
Q 041466 10 PTIRPINKGVVHRICAGQVI--KDLSSAVKELVENSLDA----GATSIEIALKEYGEEWFQVVDNGCGISPNNF------ 77 (824)
Q Consensus 10 ~~I~~L~~~~v~~IaageVi--~~p~svVKELvENSlDA----gAt~I~V~i~~~G~~~I~V~DnG~GI~~~d~------ 77 (824)
..|+.|..--.=+.+-|-.| +++..+|+|||+||||+ +|+.|+|.|..+| +|+|.|||.||+.+..
T Consensus 27 ~~I~vL~glE~VRkRPgMYiGst~~~hlv~EivdNsiDea~ag~~~~I~V~i~~dg--sI~V~DnGrGIPv~~h~~~~~~ 104 (408)
T 3lnu_A 27 ADIEVLSGLDPVKRRPGMYTDTARPNHLAQEVIDNSVDEALAGHAKQIEVTLYKDG--SCEVSDDGRGMPVDIHPEEKIP 104 (408)
T ss_dssp -------CCHHHHHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSBCTTTCSB
T ss_pred hHceeccccHHHhcCCccEECCCCcchhhHHHHHHHHHHhhcCCCceEEEEEeCCC--eEEEEEcCCCCCcccccccCCc
Confidence 45888887777777888888 67899999999999999 9999999998777 7999999999999874
Q ss_pred --hhhHH-------------------------------------------------------------------------
Q 041466 78 --KVRAV------------------------------------------------------------------------- 82 (824)
Q Consensus 78 --~~l~~------------------------------------------------------------------------- 82 (824)
+.++-
T Consensus 105 ~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~l~v~v~rdGk~~~q~f~~G~~~~~l~~ig~~~~~~~GT~V 184 (408)
T 3lnu_A 105 GVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRL 184 (408)
T ss_dssp HHHHHHHCC--------------------CHHHHHHTEEEEEEEEEETTEEEEEEEETTEECSCCEEEEECCTTCCEEEE
T ss_pred chheEEEecccCCCcCCCceeecCCccccccceehhccCeEEEEEEECCEEEEEEECCCEECCCceEeccCcCCCCCcEE
Confidence 22221
Q ss_pred --------------------HHHHHHHhhCCceEEEEEEcCCCceeeEEEEcCCCCCHHHhHhhhccccccccceee-Ee
Q 041466 83 --------------------FLCQAYALIAKGVRFVCTNTTGKNVKSVVLKTQGSSSLKDNIITVFGMNIYNCLEPV-AI 141 (824)
Q Consensus 83 --------------------~~l~~~al~~p~v~f~l~~~~~~~~~~~~~~t~~~~~~~~~i~~v~G~~~~~~l~~i-~~ 141 (824)
+.|+++|..+|+|+|.|.... ..+...|...+ .+.+-+..+...+..-.-.++ ..
T Consensus 185 ~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~der--~~~~~~f~yeg--Gi~~yv~~l~~~k~~~~~~~~~~~ 260 (408)
T 3lnu_A 185 RFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLHDEA--TGEQDSWYFEN--GLRDYLKGEMAEHEMLPADLFVGS 260 (408)
T ss_dssp EEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEETT--TCCEEEEECSS--SHHHHHHHHTTTSCCEEEEEEEEE
T ss_pred EEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEecc--CCceeEEEcCc--hHHHHHHHHhcCCCcCCCCCeEee
Confidence 788999999999999998742 22345666554 487777766543311000011 11
Q ss_pred ecCCc-eEEEEEEeCCCCCCCCCCCCceEEEEcCcccCCh---------HHHHHHHHHhhhc--cCC----------CCc
Q 041466 142 CKSDS-CKVEGFLSKPGQGSGRNLGDRQYFFVNDRPVDLP---------KVSKLVNELYKGA--NSR----------QYP 199 (824)
Q Consensus 142 ~~~~~-~~i~G~is~p~~~~~r~~~~~q~~fvN~R~v~~~---------~l~~ai~~~y~~~--~~~----------~~P 199 (824)
. .+. +.++--+.... +-...+|-|||+-+-..- .|.++|++..+.. +.+ ..=
T Consensus 261 ~-~~~~~~ve~Al~~~~-----~~~e~~~SFvN~I~T~~GGTH~~gfr~altr~in~y~~~~~l~kk~~~l~~~DiregL 334 (408)
T 3lnu_A 261 L-KKDTEIVDWAAGWVP-----EGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRGVKLAPEDVWDRV 334 (408)
T ss_dssp E-ECSSCEEEEEEEECS-----SSCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHTTE
T ss_pred E-ecCceeEEEEEEEcC-----CCCeEEEEEeCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhCcccCCCCCCHHHHhhCe
Confidence 1 222 44443333222 112368899999886543 3666666644422 111 334
Q ss_pred EEEEEEEcCCCceeeeccCCCCEEEeCCh-hHHHHHHHHHHHHHhcC
Q 041466 200 IAIMNFIVPTRACDVNVTPDKRKVFFSDE-CSILHALREGLQEIYSP 245 (824)
Q Consensus 200 ~~~L~i~~~p~~vDVNVhP~K~eV~f~~e-~~v~~~i~~~l~~~l~~ 245 (824)
.+||++.+|--..+ --+|...-=..- ..|-..+.+.|..+|..
T Consensus 335 ~aviSvkv~~PqFe---gQTK~kL~n~ev~~~V~~~v~~~l~~~l~e 378 (408)
T 3lnu_A 335 TFVLSLKMTDPQFS---GQTKERLSSRQAAGFIEGAAHDAFSLYLNQ 378 (408)
T ss_dssp EEEEEEECSSCCEE---STTSCEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCccc---CcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999877666 466665543322 33455666777777743
No 17
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.95 E-value=1.4e-09 Score=111.85 Aligned_cols=66 Identities=24% Similarity=0.308 Sum_probs=48.3
Q ss_pred CCcccCChhHHHhhhcCCcc------cCHHHHHHHHHHhhccc----CCceEEEEEEeCCeeeEEEEeCCCCcCccch
Q 041466 10 PTIRPINKGVVHRICAGQVI------KDLSSAVKELVENSLDA----GATSIEIALKEYGEEWFQVVDNGCGISPNNF 77 (824)
Q Consensus 10 ~~I~~L~~~~v~~IaageVi------~~p~svVKELvENSlDA----gAt~I~V~i~~~G~~~I~V~DnG~GI~~~d~ 77 (824)
..|+.|..--.=+-+-|-.| ..|.++|+|||+||||+ +|+.|+|.|..+| +|+|.|||.||+.++.
T Consensus 8 ~~i~~l~~le~vr~rPgmYiG~~~~~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g--~i~V~DnGrGIp~~~~ 83 (220)
T 4duh_A 8 SSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIH 83 (220)
T ss_dssp -------CHHHHHHSTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTS--CEEEEECSSCCCCSEE
T ss_pred hHcEEechhHHHHhCCceEECCCCCcccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--cEEEEECCcCcccccc
Confidence 35666665444444444443 46899999999999999 9999999999876 7999999999999874
No 18
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.94 E-value=2.5e-09 Score=108.32 Aligned_cols=45 Identities=42% Similarity=0.729 Sum_probs=41.1
Q ss_pred cCHHHHHHHHHHhhcc---cC-CceEEEEEEeCCeeeEEEEeCCCCcCccc
Q 041466 30 KDLSSAVKELVENSLD---AG-ATSIEIALKEYGEEWFQVVDNGCGISPNN 76 (824)
Q Consensus 30 ~~p~svVKELvENSlD---Ag-At~I~V~i~~~G~~~I~V~DnG~GI~~~d 76 (824)
..|.++|||||+|||| || |+.|.|.|..+| +|+|.|||.||+.+-
T Consensus 30 ~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g--~i~V~DnG~Gip~~~ 78 (198)
T 3ttz_A 30 RGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDN--WIKVTDNGRGIPVDI 78 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGG--EEEEEECSSCCCCSB
T ss_pred cchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCC--eEEEEECCCCccccc
Confidence 4589999999999999 59 999999999877 899999999999864
No 19
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=98.92 E-value=2.1e-10 Score=119.50 Aligned_cols=64 Identities=16% Similarity=0.355 Sum_probs=53.7
Q ss_pred CcccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccC----------------Cc--eEEEEEEeCCeeeEEEEeCCCCc
Q 041466 11 TIRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAG----------------AT--SIEIALKEYGEEWFQVVDNGCGI 72 (824)
Q Consensus 11 ~I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAg----------------At--~I~V~i~~~G~~~I~V~DnG~GI 72 (824)
.|+.|++.++++|++ +|.++|+|||+||+||+ |+ .|.|.+..+| ..|+|.|||+||
T Consensus 32 ~i~~L~~~l~~~lys-----~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~-~~i~I~DnG~GM 105 (235)
T 2ior_A 32 EVKQLLHLMIHSLYS-----NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGM 105 (235)
T ss_dssp HHHHHHHHHHHHTGG-----GTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTT-TEEEEEECSSCC
T ss_pred hHHHHHHHHHHhhcC-----CHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCc-eEEEEEECCCCC
Confidence 488999999999998 89999999999999999 44 4666655555 469999999999
Q ss_pred Cccchhhh
Q 041466 73 SPNNFKVR 80 (824)
Q Consensus 73 ~~~d~~~l 80 (824)
+++|+...
T Consensus 106 s~edl~~~ 113 (235)
T 2ior_A 106 TRDEVIDH 113 (235)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99998643
No 20
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=98.84 E-value=7.3e-10 Score=115.45 Aligned_cols=62 Identities=18% Similarity=0.327 Sum_probs=54.0
Q ss_pred CcccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCC------------------ceEEEEEEeCCeeeEEEEeCCCCc
Q 041466 11 TIRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGA------------------TSIEIALKEYGEEWFQVVDNGCGI 72 (824)
Q Consensus 11 ~I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgA------------------t~I~V~i~~~G~~~I~V~DnG~GI 72 (824)
.|+.|.+-++++|.++ |.++|+|||+||+||+| ..|.|.+..++ ..|.|.|||+||
T Consensus 17 ei~~L~~ll~~~lys~-----~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~-~~i~I~DnG~GM 90 (236)
T 2gqp_A 17 EVNRMMKLIINSLYKN-----KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-NLLHVTDTGVGM 90 (236)
T ss_dssp HHHHHHHHHHHHTTTC-----TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT-TEEEEEECSCCC
T ss_pred hHHHHHHHHHHhhcCC-----chHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCC-CEEEEEECCcCC
Confidence 3788999999999998 78999999999999998 56777766544 689999999999
Q ss_pred Cccchh
Q 041466 73 SPNNFK 78 (824)
Q Consensus 73 ~~~d~~ 78 (824)
+++|+.
T Consensus 91 t~edl~ 96 (236)
T 2gqp_A 91 TREELV 96 (236)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999985
No 21
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=98.83 E-value=5.2e-10 Score=118.22 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=52.5
Q ss_pred cccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCC----------------ceEEEEEE-eCCeeeEEEEeCCCCcCc
Q 041466 12 IRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGA----------------TSIEIALK-EYGEEWFQVVDNGCGISP 74 (824)
Q Consensus 12 I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgA----------------t~I~V~i~-~~G~~~I~V~DnG~GI~~ 74 (824)
|+.|.+-++++|.+ +|.++|+|||+||+||+| +.|.|.|. +.+...|.|.|||+||++
T Consensus 54 i~~Ll~ll~~~lys-----~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~ 128 (264)
T 1yc1_A 54 IAQLMSLIINTFYS-----NKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTK 128 (264)
T ss_dssp HHHHHHHHHHCCCS-----CTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCH
T ss_pred HHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCH
Confidence 56677777776655 899999999999999999 78888876 456778999999999999
Q ss_pred cchh
Q 041466 75 NNFK 78 (824)
Q Consensus 75 ~d~~ 78 (824)
+|+.
T Consensus 129 edL~ 132 (264)
T 1yc1_A 129 ADLI 132 (264)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9985
No 22
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.67 E-value=4.6e-08 Score=100.86 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=50.6
Q ss_pred CCcccCChhHHHhhhcCCcc-----cCHHHHHHHHHHhhccc----CCceEEEEEEeCCeeeEEEEeCCCCcCccc
Q 041466 10 PTIRPINKGVVHRICAGQVI-----KDLSSAVKELVENSLDA----GATSIEIALKEYGEEWFQVVDNGCGISPNN 76 (824)
Q Consensus 10 ~~I~~L~~~~v~~IaageVi-----~~p~svVKELvENSlDA----gAt~I~V~i~~~G~~~I~V~DnG~GI~~~d 76 (824)
..|+.|..--.=+.+-|-.| ..+..+|+|||+||||+ +|+.|.|.|..+| +|+|.|||.||+.++
T Consensus 14 ~~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g--~i~V~DnG~GIp~~~ 87 (226)
T 4emv_A 14 DAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDG--SLTVQDHGRGMPTGM 87 (226)
T ss_dssp ---CCCBCTHHHHHCHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSB
T ss_pred hhcEEcchhHHHhhCCceEEcCCCcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCC--eEEEEEcCCCccccc
Confidence 35666765444444444444 34789999999999999 9999999999776 799999999999998
No 23
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=98.66 E-value=2.9e-09 Score=110.08 Aligned_cols=62 Identities=21% Similarity=0.354 Sum_probs=52.6
Q ss_pred cccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCCc----------------eEEEEEE-eCCeeeEEEEeCCCCcCc
Q 041466 12 IRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGAT----------------SIEIALK-EYGEEWFQVVDNGCGISP 74 (824)
Q Consensus 12 I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgAt----------------~I~V~i~-~~G~~~I~V~DnG~GI~~ 74 (824)
|+.|.+-+++.|.++. ..+|+|||+||+||+|+ .|.|.|. ++|...|+|.|||+||++
T Consensus 18 i~~ll~ll~~~lYs~~-----~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs~ 92 (228)
T 3t0h_A 18 IAQLMSLIINTFYSNK-----EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTK 92 (228)
T ss_dssp HHHHHHHHHHSCCSCT-----THHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCH
T ss_pred HHHHHHHHHHhhcCCc-----HHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCCH
Confidence 7888888999999885 78999999999999986 3455543 567789999999999999
Q ss_pred cchh
Q 041466 75 NNFK 78 (824)
Q Consensus 75 ~d~~ 78 (824)
+|+.
T Consensus 93 edl~ 96 (228)
T 3t0h_A 93 ADLI 96 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9985
No 24
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=98.65 E-value=3.5e-09 Score=109.22 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=49.5
Q ss_pred cccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCCc------------------eEEEEEEeCCeeeEEEEeCCCCcC
Q 041466 12 IRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGAT------------------SIEIALKEYGEEWFQVVDNGCGIS 73 (824)
Q Consensus 12 I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgAt------------------~I~V~i~~~G~~~I~V~DnG~GI~ 73 (824)
|+.|..-+++.|.++. ..+|+|||+||+||+|+ .|.|.+. +|...|.|.|||+||+
T Consensus 12 ~~~l~~ll~~~lys~~-----~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~-~~~~~i~I~DnG~GMs 85 (220)
T 2wer_A 12 ITQLMSLIINTVYSNK-----EIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPK-PEQKVLEIRDSGIGMT 85 (220)
T ss_dssp HHHHHHHHHHHCCSST-----THHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEE-GGGTEEEEEECSCCCC
T ss_pred HHHHHHHHHHhccCCc-----hHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEEC-CCCCEEEEEEcCCCCC
Confidence 6677777788877776 58999999999999995 3555543 4567899999999999
Q ss_pred ccchh
Q 041466 74 PNNFK 78 (824)
Q Consensus 74 ~~d~~ 78 (824)
++|+.
T Consensus 86 ~edl~ 90 (220)
T 2wer_A 86 KAELI 90 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
No 25
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.63 E-value=2.2e-08 Score=111.64 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=42.9
Q ss_pred ccCHHHHHHHHHHhhcccC-----CceEEEEEEeCCeeeEEEEeCCCCcCccc
Q 041466 29 IKDLSSAVKELVENSLDAG-----ATSIEIALKEYGEEWFQVVDNGCGISPNN 76 (824)
Q Consensus 29 i~~p~svVKELvENSlDAg-----At~I~V~i~~~G~~~I~V~DnG~GI~~~d 76 (824)
+..+.++|+|||+|||||+ |+.|.|.|..+| .+|+|.|||.||+.++
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~~-~~I~V~DnGrGIPv~~ 101 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPEN-NLISIWNNGKGIPVVE 101 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT-TEEEEEEESSCCCCSE
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEEECCC-CEEEEEECCCcccCcc
Confidence 4578999999999999998 999999999864 4899999999999998
No 26
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.63 E-value=4.3e-09 Score=121.59 Aligned_cols=52 Identities=38% Similarity=0.502 Sum_probs=45.2
Q ss_pred cCHHHHHHHHHHhhcccCCc-----eEEEEEEeC----CeeeEEEEeCCCCcCccchhhhH
Q 041466 30 KDLSSAVKELVENSLDAGAT-----SIEIALKEY----GEEWFQVVDNGCGISPNNFKVRA 81 (824)
Q Consensus 30 ~~p~svVKELvENSlDAgAt-----~I~V~i~~~----G~~~I~V~DnG~GI~~~d~~~l~ 81 (824)
.++.+||+|||+|||||+++ .|.|.+... +.-.|+|.|||+||++++++.++
T Consensus 30 ~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF 90 (530)
T 2zbk_B 30 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAF 90 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHh
Confidence 35789999999999999998 899998764 46789999999999999877554
No 27
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.62 E-value=8.3e-09 Score=117.82 Aligned_cols=53 Identities=38% Similarity=0.472 Sum_probs=45.9
Q ss_pred cCHHHHHHHHHHhhcccCCc-----eEEEEEEeC----CeeeEEEEeCCCCcCccchhhhHH
Q 041466 30 KDLSSAVKELVENSLDAGAT-----SIEIALKEY----GEEWFQVVDNGCGISPNNFKVRAV 82 (824)
Q Consensus 30 ~~p~svVKELvENSlDAgAt-----~I~V~i~~~----G~~~I~V~DnG~GI~~~d~~~l~~ 82 (824)
.++..||+|||+|||||+++ .|.|.+... +.-.|+|.|||+||++++++.++.
T Consensus 31 ~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~ 92 (471)
T 1mu5_A 31 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFG 92 (471)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhc
Confidence 35789999999999999998 899998864 467899999999999999876554
No 28
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=98.59 E-value=7.6e-09 Score=108.24 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=52.4
Q ss_pred cccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCCc----------------eEEEEEE-eCCeeeEEEEeCCCCcCc
Q 041466 12 IRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGAT----------------SIEIALK-EYGEEWFQVVDNGCGISP 74 (824)
Q Consensus 12 I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgAt----------------~I~V~i~-~~G~~~I~V~DnG~GI~~ 74 (824)
|+.|.+-+++.|.++. ..+|+|||+||+||+|+ .+.|.|. ++|...|+|.|||+||++
T Consensus 46 i~~Ll~ll~~~lYs~~-----~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~ 120 (256)
T 3o0i_A 46 IAQLMSLIINTFYSNK-----EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTK 120 (256)
T ss_dssp HHHHHHHHHHSCCSCT-----THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCH
T ss_pred HHHHHHHHHHhccCCc-----HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcCH
Confidence 7888888899998877 58899999999999987 3444443 457789999999999999
Q ss_pred cchhh
Q 041466 75 NNFKV 79 (824)
Q Consensus 75 ~d~~~ 79 (824)
+|+..
T Consensus 121 edl~~ 125 (256)
T 3o0i_A 121 ADLIN 125 (256)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99853
No 29
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.56 E-value=7e-09 Score=121.50 Aligned_cols=52 Identities=31% Similarity=0.368 Sum_probs=45.6
Q ss_pred cCHHHHHHHHHHhhcccCCc-----eEEEEEEeCC--eeeEEEEeCCCCcCccchhhhH
Q 041466 30 KDLSSAVKELVENSLDAGAT-----SIEIALKEYG--EEWFQVVDNGCGISPNNFKVRA 81 (824)
Q Consensus 30 ~~p~svVKELvENSlDAgAt-----~I~V~i~~~G--~~~I~V~DnG~GI~~~d~~~l~ 81 (824)
.++.+||+|||+|||||+++ .|.|.+..+| .-.|+|.|||+||+.++++.++
T Consensus 36 ~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF 94 (621)
T 2q2e_B 36 RSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVF 94 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHh
Confidence 46899999999999999987 8999988754 4579999999999999987666
No 30
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=98.35 E-value=1.2e-07 Score=100.21 Aligned_cols=61 Identities=18% Similarity=0.346 Sum_probs=50.4
Q ss_pred cccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCC------------------ceEEEEEEeCCeeeEEEEeCCCCcC
Q 041466 12 IRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGA------------------TSIEIALKEYGEEWFQVVDNGCGIS 73 (824)
Q Consensus 12 I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgA------------------t~I~V~i~~~G~~~I~V~DnG~GI~ 73 (824)
|++|.+-+++.|.++.. .+|+|||+||+||+| ..|.|.+. .+...|.|.|||+||+
T Consensus 14 i~~Ll~li~~~lYsn~e-----ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d-~~~~~l~I~DnGiGMt 87 (269)
T 1qy5_A 14 VNRMMKLIINSLYKNKE-----IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCD-KEKNLLHVTDTGVGMT 87 (269)
T ss_dssp HHHHHHHHHHHHTTCTT-----HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEE-TTTTEEEEEECSCCCC
T ss_pred HHHHHHHHHHhccCCch-----HHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEc-CCceEEEEEECCCCCC
Confidence 77888889999888764 599999999999987 35666554 4556899999999999
Q ss_pred ccchh
Q 041466 74 PNNFK 78 (824)
Q Consensus 74 ~~d~~ 78 (824)
++|+.
T Consensus 88 ~edl~ 92 (269)
T 1qy5_A 88 REELV 92 (269)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
No 31
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=97.88 E-value=4.6e-06 Score=88.13 Aligned_cols=61 Identities=18% Similarity=0.334 Sum_probs=48.7
Q ss_pred cccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCC------------------ceEEEEEEeCCeeeEEEEeCCCCcC
Q 041466 12 IRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGA------------------TSIEIALKEYGEEWFQVVDNGCGIS 73 (824)
Q Consensus 12 I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgA------------------t~I~V~i~~~G~~~I~V~DnG~GI~ 73 (824)
|+.|-+-+++.|.++. ..+++|||.||.||.+ -.|.|.+... ...|.|.|||.||+
T Consensus 32 i~~Ll~ll~~~lYsn~-----~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~-~~tLtI~DNGiGMt 105 (281)
T 3peh_A 32 VTRLMDIIVNSLYTQK-----EVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKE-KNILSITDTGIGMT 105 (281)
T ss_dssp HHHHHHHHHHHHTTCG-----GGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETT-TTEEEEEECSCCCC
T ss_pred HHHHHHHHHHhccCCh-----HHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCC-CcEEEEEeCCCCCC
Confidence 6667777777777754 7899999999999986 3566665543 35799999999999
Q ss_pred ccchh
Q 041466 74 PNNFK 78 (824)
Q Consensus 74 ~~d~~ 78 (824)
++|+.
T Consensus 106 ~edL~ 110 (281)
T 3peh_A 106 KVDLI 110 (281)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99985
No 32
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=97.81 E-value=5.1e-06 Score=97.81 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=41.9
Q ss_pred cccCHHHHHHHHHHhhcccCC------------------ceEEEEEEeCCeeeEEEEeCCCCcCccchh
Q 041466 28 VIKDLSSAVKELVENSLDAGA------------------TSIEIALKEYGEEWFQVVDNGCGISPNNFK 78 (824)
Q Consensus 28 Vi~~p~svVKELvENSlDAgA------------------t~I~V~i~~~G~~~I~V~DnG~GI~~~d~~ 78 (824)
...++..+|+|||+||+||++ .+|.|.+..+| ..|+|+|||+||+++|+.
T Consensus 23 LYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~-~~I~I~DnGiGMt~edl~ 90 (677)
T 2cg9_A 23 VYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ-KVLEIRDSGIGMTKAELI 90 (677)
T ss_dssp CCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGG-TEEEEEECSCCCCHHHHH
T ss_pred CCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCC-CEEEEEECCCCCCHHHHH
Confidence 445677899999999999985 46888876655 589999999999999984
No 33
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=97.67 E-value=1e-05 Score=83.83 Aligned_cols=61 Identities=21% Similarity=0.336 Sum_probs=44.3
Q ss_pred cccCChhHHHhhhcCCcccCHHHHHHHHHHhhcccCCc------------------eEEEEEEeCCeeeEEEEeCCCCcC
Q 041466 12 IRPINKGVVHRICAGQVIKDLSSAVKELVENSLDAGAT------------------SIEIALKEYGEEWFQVVDNGCGIS 73 (824)
Q Consensus 12 I~~L~~~~v~~IaageVi~~p~svVKELvENSlDAgAt------------------~I~V~i~~~G~~~I~V~DnG~GI~ 73 (824)
|+.|-+-+++.| -.++..+++|||.||.||.++ .|.|.+.. ....|.|.|||.||+
T Consensus 25 ~~~ll~ll~~~l-----Ys~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~-~~~~L~I~DnGiGMt 98 (239)
T 3nmq_A 25 IAQLMSLIINTF-----YSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNP-QERTLTLVDTGIGMT 98 (239)
T ss_dssp HHHHHHHHHHSC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET-TTTEEEEEECSCCCC
T ss_pred HHHHHHHHHHhc-----cCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeC-CccEEEEEeCCCCCC
Confidence 334444444444 445678999999999999875 45665543 345799999999999
Q ss_pred ccchh
Q 041466 74 PNNFK 78 (824)
Q Consensus 74 ~~d~~ 78 (824)
++|+.
T Consensus 99 ~edL~ 103 (239)
T 3nmq_A 99 KADLI 103 (239)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99984
No 34
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.63 E-value=0.00038 Score=63.91 Aligned_cols=72 Identities=22% Similarity=0.284 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHhhcccC-CceEEEEEEeCCeeeEEEEeCCCCcCccchhhhHHHHHHHHHhhCCceEEEEEEcCC
Q 041466 31 DLSSAVKELVENSLDAG-ATSIEIALKEYGEEWFQVVDNGCGISPNNFKVRAVFLCQAYALIAKGVRFVCTNTTG 104 (824)
Q Consensus 31 ~p~svVKELvENSlDAg-At~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l~~~~l~~~al~~p~v~f~l~~~~~ 104 (824)
.+..|+.+|+.||+.++ ++.|.|.+...+--.|.|.|||.||++++. .+++.++++++-.| +-++.+.+..+
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~~~~~~i~v~D~G~gi~~~~~-GlGL~i~~~~~~~~-gG~i~~~~~~~ 115 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKVDDDLCIEVTDNGRGMPDEFT-GSGLTNLRQRAEQA-GGEFTLASMPG 115 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEESSEEEEEEEECCCCCTTTTC-SHHHHHHHHHHHHT-TCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEEcCCEEEEEecCCCCCCcccC-CcCHHHHHHHHHHc-CCEEEEeeCCC
Confidence 46678999999999986 889999887543367999999999999884 79999999988776 55788877654
No 35
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.51 E-value=3.8e-05 Score=86.04 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=41.6
Q ss_pred cCHHHHHHHHHHhhcccC-----CceEEEEEEeCCeeeEEEEeCCCCcCccchh
Q 041466 30 KDLSSAVKELVENSLDAG-----ATSIEIALKEYGEEWFQVVDNGCGISPNNFK 78 (824)
Q Consensus 30 ~~p~svVKELvENSlDAg-----At~I~V~i~~~G~~~I~V~DnG~GI~~~d~~ 78 (824)
..+..+|+|+|+||+|+. |+.|.|.|...| .+|+|.|||.||+.+..+
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~d~-~sI~V~DnGrGIPv~~h~ 115 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEE-HTIEVKNDGKGIPIEIHN 115 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT-TEEEEEEESSCCCCSBCT
T ss_pred chHHHHHHHHHhCHHHHHHhcCCCCEEEEEEECCC-CEEEEEECCCcccCcccc
Confidence 457789999999999987 899999999764 379999999999988643
No 36
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.48 E-value=0.00056 Score=62.38 Aligned_cols=73 Identities=26% Similarity=0.258 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHhhcccC-CceEEEEEEe-CCeeeEEEEeCCCCcCccchhhhHHHHHHHHHhhCCceEEEEEEcCCCc
Q 041466 31 DLSSAVKELVENSLDAG-ATSIEIALKE-YGEEWFQVVDNGCGISPNNFKVRAVFLCQAYALIAKGVRFVCTNTTGKN 106 (824)
Q Consensus 31 ~p~svVKELvENSlDAg-At~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l~~~~l~~~al~~p~v~f~l~~~~~~~ 106 (824)
.+..++.||+.||+..+ ++.|.|.+.. ++ -.|.|.|||.||++++. .+++.++++.+-.+ +-++.+....+.+
T Consensus 39 ~l~~il~nll~Na~k~~~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~~-GlGL~~~~~~~~~~-gG~i~~~~~~~~G 113 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHANATSLAINVSVEDD-VRVEVVDDGVGISGDIT-ESGLRNLRQRADDA-GGEFTVENMPTGG 113 (124)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEEEEEEEE-EEEEEEECCCSSCGGGS-HHHHHHHHHHHHHH-TCEEEEEECTTSS
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEEeCCC-EEEEEEECCCCCCcccc-ccCHHHHHHHHHHh-CCEEEEEEcCCCc
Confidence 34579999999999964 5688888864 34 67999999999999885 78889998888766 4477777755433
No 37
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.46 E-value=0.00055 Score=63.23 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhccc-CCceEEEEEEe-CCeeeEEEEeCCCCcCccch--hhhHHHHHHHHHhhCCceEEEEEEcC
Q 041466 32 LSSAVKELVENSLDA-GATSIEIALKE-YGEEWFQVVDNGCGISPNNF--KVRAVFLCQAYALIAKGVRFVCTNTT 103 (824)
Q Consensus 32 p~svVKELvENSlDA-gAt~I~V~i~~-~G~~~I~V~DnG~GI~~~d~--~~l~~~~l~~~al~~p~v~f~l~~~~ 103 (824)
+..++.|||+||+.. +++.|.|.+.. ++.-.|.|.|||.||+++++ ..+++.++++.+-.|- -++.+.+..
T Consensus 41 l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~g~GlGL~~~~~~~~~~g-G~i~~~s~~ 115 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENSFSKGHGLLGMRERLEFAN-GSLHIDTEN 115 (128)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCSCSSCCCTTSHHHHHHHHHHHTT-CEEEEECSS
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEEeCCEEEEEEEECCcCcCcccCCCCCccHHHHHHHHHHcC-CEEEEEeCC
Confidence 457899999999986 57899998864 45557999999999999874 3577788888887774 467776653
No 38
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.35 E-value=0.0009 Score=63.06 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHhhcccCCceEEEEEEe-CCeeeEEEEeCCCCcCccchhhhH----------------HHHHHHHHhhCC
Q 041466 31 DLSSAVKELVENSLDAGATSIEIALKE-YGEEWFQVVDNGCGISPNNFKVRA----------------VFLCQAYALIAK 93 (824)
Q Consensus 31 ~p~svVKELvENSlDAgAt~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l~----------------~~~l~~~al~~p 93 (824)
.+..|+.+||.||+.++...|.|.+.. ++.-.|.|.|||.||+.++++.++ +.++++++-.|
T Consensus 44 ~l~~il~nLl~NAi~~~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~~g~GlGL~i~~~~~~~~- 122 (152)
T 1id0_A 44 DFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQY- 122 (152)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCCCTTCCSCHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHhCcCeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhccceeccCCCCCcccCHHHHHHHHHHc-
Confidence 367899999999999988899888865 344579999999999999876543 36777776655
Q ss_pred ceEEEEEEcCCC
Q 041466 94 GVRFVCTNTTGK 105 (824)
Q Consensus 94 ~v~f~l~~~~~~ 105 (824)
+-.+.+.+..+.
T Consensus 123 gG~i~~~~~~~~ 134 (152)
T 1id0_A 123 EGKIVAGESMLG 134 (152)
T ss_dssp TCEEEEEECTTS
T ss_pred CCEEEEEeCCCC
Confidence 446777665433
No 39
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.21 E-value=0.00093 Score=65.78 Aligned_cols=46 Identities=20% Similarity=0.401 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhcccC--------------CceEEEEEEe-CCeeeEEEEeCCCCcCccch
Q 041466 32 LSSAVKELVENSLDAG--------------ATSIEIALKE-YGEEWFQVVDNGCGISPNNF 77 (824)
Q Consensus 32 p~svVKELvENSlDAg--------------At~I~V~i~~-~G~~~I~V~DnG~GI~~~d~ 77 (824)
...++.+||+||+.++ ...|.|.+.. ++.-.|.|.|||.||+++++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~ 108 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKI 108 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHH
Confidence 4455999999999985 6788888764 45567999999999999875
No 40
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.17 E-value=0.0023 Score=60.25 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHhhcccCC-ceEEEEEEe-CCeeeEEEEeCCCCcCccchhhhHH-----------------HHHHHHHhh
Q 041466 31 DLSSAVKELVENSLDAGA-TSIEIALKE-YGEEWFQVVDNGCGISPNNFKVRAV-----------------FLCQAYALI 91 (824)
Q Consensus 31 ~p~svVKELvENSlDAgA-t~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l~~-----------------~~l~~~al~ 91 (824)
.+..|+.+|+.||+.++. ..|.|.+.. ++.-.|.|.|||.||++++++.++. .++++++-.
T Consensus 46 ~l~~il~nLl~NA~~~~~~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~~~~g~GlGL~i~~~~~~~ 125 (150)
T 1ysr_A 46 GLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQL 125 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC-----------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCCCCCCCCCcCHHHHHHHHHH
Confidence 356889999999999864 477777754 4556799999999999998875542 556666655
Q ss_pred CCceEEEEEEcC
Q 041466 92 AKGVRFVCTNTT 103 (824)
Q Consensus 92 ~p~v~f~l~~~~ 103 (824)
| +-++.+....
T Consensus 126 ~-gG~i~~~~~~ 136 (150)
T 1ysr_A 126 H-GGTASLENSP 136 (150)
T ss_dssp T-TCEEEEEECT
T ss_pred c-CCEEEEeecC
Confidence 4 3356665543
No 41
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.12 E-value=0.00092 Score=66.86 Aligned_cols=47 Identities=28% Similarity=0.506 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcccCC--ceEEEEEEeCCeeeEEEEeCCCCcCccchhhhH
Q 041466 32 LSSAVKELVENSLDAGA--TSIEIALKEYGEEWFQVVDNGCGISPNNFKVRA 81 (824)
Q Consensus 32 p~svVKELvENSlDAgA--t~I~V~i~~~G~~~I~V~DnG~GI~~~d~~~l~ 81 (824)
+..|+.+||.||+.+.. ..|.|.+...+ |.|.|||.||++++++.++
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~~~~---i~V~D~G~Gi~~~~~~~if 166 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLNADN---FIVRDNGPGVTPEALARIG 166 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEECSSE---EEEECSCC-----------
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEccCe---EEEEECCCCCCHHHHHHHH
Confidence 66799999999999964 45666665543 9999999999999876543
No 42
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.08 E-value=0.0021 Score=64.44 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhccc-CCceEEEEEEe-CCeeeEEEEeCCCCcCccchh--hhHHHHHHHHHhhCCceEEEEEEcC
Q 041466 32 LSSAVKELVENSLDA-GATSIEIALKE-YGEEWFQVVDNGCGISPNNFK--VRAVFLCQAYALIAKGVRFVCTNTT 103 (824)
Q Consensus 32 p~svVKELvENSlDA-gAt~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~--~l~~~~l~~~al~~p~v~f~l~~~~ 103 (824)
+..|+.||+.||+.. +++.|.|.+.. ++.-.|.|.|||.||++++.. .+++.+++..+-.| +-++.+....
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~g~GlGL~~~~~~v~~~-gG~i~~~s~~ 205 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENSFSKGHGLLGMRERLEFA-NGSLHIDTEN 205 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCC--------CHHHHHHHHHHHT-TCEEEEECSS
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEeCCEEEEEEEECCcCCCCCCCCCCCCCHHHHHHHHHHc-CCEEEEeCCC
Confidence 446899999999986 56789988864 556689999999999998742 56678888888777 4477776654
No 43
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.06 E-value=0.0019 Score=60.77 Aligned_cols=44 Identities=27% Similarity=0.412 Sum_probs=36.9
Q ss_pred cCHHHHHHHHHHhhcccC-----CceEEEEEEe-CCeeeEEEEeCCCCcC
Q 041466 30 KDLSSAVKELVENSLDAG-----ATSIEIALKE-YGEEWFQVVDNGCGIS 73 (824)
Q Consensus 30 ~~p~svVKELvENSlDAg-----At~I~V~i~~-~G~~~I~V~DnG~GI~ 73 (824)
..+..++.|||+||+..+ ...|.|.+.. ++.-.|+|.|||.||+
T Consensus 38 ~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~ 87 (145)
T 1th8_A 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC
Confidence 457889999999999987 4688888764 5566799999999999
No 44
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=96.94 E-value=0.0024 Score=59.89 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHhhcccC--CceEEEEEEe-CCeeeEEEEeCCCCcCccchhhhH--------------HHHHHHHHhhCC
Q 041466 31 DLSSAVKELVENSLDAG--ATSIEIALKE-YGEEWFQVVDNGCGISPNNFKVRA--------------VFLCQAYALIAK 93 (824)
Q Consensus 31 ~p~svVKELvENSlDAg--At~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l~--------------~~~l~~~al~~p 93 (824)
.+..++.+|+.||+.+. ...|.|.+.. ++.-.|.|.|||.||++++++.++ +.++++++-...
T Consensus 47 ~l~~il~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~~g~GlGL~i~~~~~~~~~ 126 (152)
T 3a0y_A 47 RIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQGTGLGLSICRKIIEDEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC--CCCCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCCCCCCcCHHHHHHHHHHhC
Confidence 46788999999999985 5788888775 455579999999999999876543 377787776233
Q ss_pred ceEEEEEEcC
Q 041466 94 GVRFVCTNTT 103 (824)
Q Consensus 94 ~v~f~l~~~~ 103 (824)
+-.+.+....
T Consensus 127 gg~~~~~~~~ 136 (152)
T 3a0y_A 127 GGKIWTENRE 136 (152)
T ss_dssp SCEEEEEEET
T ss_pred CcEEEEecCC
Confidence 5566776653
No 45
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=96.94 E-value=0.0026 Score=65.60 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHhhcccCC-----ceEEEEEEe-CCeeeEEEEeCCCCcCccchhhhH
Q 041466 31 DLSSAVKELVENSLDAGA-----TSIEIALKE-YGEEWFQVVDNGCGISPNNFKVRA 81 (824)
Q Consensus 31 ~p~svVKELvENSlDAgA-----t~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l~ 81 (824)
.+..|+..||.||+++.. ..|.|.+.. ++.-.|.|.|||.||++++++.++
T Consensus 138 ~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 194 (258)
T 2c2a_A 138 RIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIF 194 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGG
T ss_pred HHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhc
Confidence 367899999999999864 347777653 455679999999999999876553
No 46
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=96.85 E-value=0.0029 Score=65.44 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhcccCC--ceEEEEEEe-CCeeeEEEEeCCCCcCccchhh--------------hHHHHHHHHHhhCCc
Q 041466 32 LSSAVKELVENSLDAGA--TSIEIALKE-YGEEWFQVVDNGCGISPNNFKV--------------RAVFLCQAYALIAKG 94 (824)
Q Consensus 32 p~svVKELvENSlDAgA--t~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~--------------l~~~~l~~~al~~p~ 94 (824)
+..|+.+||.||+++.. ..|.|.+.. ++.-.|.|.|||.||+++++.. +++.++++++-.+ +
T Consensus 156 l~~il~nLl~NA~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~g~GlGL~i~~~~~~~~-g 234 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDRGGPGLGLALVKALVELH-G 234 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSSCCCTTHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHc-C
Confidence 66899999999999965 588888875 4555799999999999887654 4457777777666 4
Q ss_pred eEEEEEEcCCCc
Q 041466 95 VRFVCTNTTGKN 106 (824)
Q Consensus 95 v~f~l~~~~~~~ 106 (824)
-.+.+....++|
T Consensus 235 G~i~i~s~~~~G 246 (268)
T 4ew8_A 235 GWVALESEPGNG 246 (268)
T ss_dssp CEEEEEECTTSC
T ss_pred CEEEEEecCCCC
Confidence 467777765444
No 47
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.85 E-value=0.0021 Score=60.67 Aligned_cols=72 Identities=18% Similarity=0.180 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHhhcccC---CceEEEEEEeC-C----------eeeEEEEeCCCCcCccchhhhH--------------H
Q 041466 31 DLSSAVKELVENSLDAG---ATSIEIALKEY-G----------EEWFQVVDNGCGISPNNFKVRA--------------V 82 (824)
Q Consensus 31 ~p~svVKELvENSlDAg---At~I~V~i~~~-G----------~~~I~V~DnG~GI~~~d~~~l~--------------~ 82 (824)
.+..++.+|+.||+.+. ...|.|.+... + .-.|.|.|||.||++++++.++ +
T Consensus 48 ~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~~g~GlGL 127 (160)
T 1r62_A 48 QIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGL 127 (160)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC--------------------CHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCCCCCccCH
Confidence 36788999999999975 67888877643 2 3469999999999999876543 3
Q ss_pred HHHHHHHhhCCceEEEEEEcC
Q 041466 83 FLCQAYALIAKGVRFVCTNTT 103 (824)
Q Consensus 83 ~~l~~~al~~p~v~f~l~~~~ 103 (824)
.++++++-.+ +-.+.+....
T Consensus 128 ~i~~~~~~~~-gG~l~i~s~~ 147 (160)
T 1r62_A 128 SIARNLIDQH-SGKIEFTSWP 147 (160)
T ss_dssp HHHHHHHHHT-TCEEEEEEET
T ss_pred HHHHHHHHHC-CCeEEEEeCC
Confidence 6667766655 4456665543
No 48
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=96.84 E-value=0.003 Score=64.07 Aligned_cols=74 Identities=9% Similarity=0.214 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHhhcccC--CceEEEEEEe-CCeeeEEEEeCCCCcCccchhh---------------hHHHHHHHHHhhC
Q 041466 31 DLSSAVKELVENSLDAG--ATSIEIALKE-YGEEWFQVVDNGCGISPNNFKV---------------RAVFLCQAYALIA 92 (824)
Q Consensus 31 ~p~svVKELvENSlDAg--At~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~---------------l~~~~l~~~al~~ 92 (824)
.+..|+.+||.||+.+. +..|.|.+.. ++.-.|.|.|||.||++++++. +++.+++.++-.|
T Consensus 123 ~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~~g~GlGL~i~~~i~~~~ 202 (244)
T 3d36_A 123 KFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTKGVKGTGLGMMVVYRIIESM 202 (244)
T ss_dssp HHHHHHHHHHHHHHHTCTTCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSGGGCCSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccccCCCCCCcchhHHHHHHHHHHc
Confidence 46789999999999995 6778887764 5666899999999999887653 3446677766665
Q ss_pred CceEEEEEEcCCC
Q 041466 93 KGVRFVCTNTTGK 105 (824)
Q Consensus 93 p~v~f~l~~~~~~ 105 (824)
+-.+.+....+.
T Consensus 203 -gG~i~~~~~~~~ 214 (244)
T 3d36_A 203 -NGTIRIESEIHK 214 (244)
T ss_dssp -TCEEEEEEETTT
T ss_pred -CCEEEEEecCCC
Confidence 446666655333
No 49
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=96.82 E-value=0.0011 Score=63.23 Aligned_cols=49 Identities=33% Similarity=0.514 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHhhcccCCceEEEEEEe-CCeeeEEEEeCCCCcCccchhh
Q 041466 31 DLSSAVKELVENSLDAGATSIEIALKE-YGEEWFQVVDNGCGISPNNFKV 79 (824)
Q Consensus 31 ~p~svVKELvENSlDAgAt~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~ 79 (824)
.+..|+.+||.||+.++...|.|.+.. ++.-.|.|.|||.||+.++++.
T Consensus 47 ~l~~il~nll~NAik~~~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~ 96 (161)
T 1bxd_A 47 SIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKH 96 (161)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEEEEETTEEEEEEEEESSCSCTTGGGC
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 467899999999999999999998864 4566799999999999998863
No 50
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=96.61 E-value=0.0055 Score=59.42 Aligned_cols=49 Identities=16% Similarity=0.378 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHhhcccCC--ceEEEEE--Ee-CCeeeEEEEeCCCCcCccchhh
Q 041466 31 DLSSAVKELVENSLDAGA--TSIEIAL--KE-YGEEWFQVVDNGCGISPNNFKV 79 (824)
Q Consensus 31 ~p~svVKELvENSlDAgA--t~I~V~i--~~-~G~~~I~V~DnG~GI~~~d~~~ 79 (824)
.+..|+.+||.||+++.. ..|.|.+ .. ++.-.|.|.|||.||+.+++..
T Consensus 43 ~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~ 96 (177)
T 3sl2_A 43 KITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEK 96 (177)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTT
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHH
Confidence 366899999999999963 4455554 43 4555799999999999987653
No 51
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=96.60 E-value=0.0043 Score=68.67 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=41.6
Q ss_pred cCHHHHHHHHHHhhcccCCc----------eEEEEEEeC-CeeeEEEEeCCCCcCccchhhh
Q 041466 30 KDLSSAVKELVENSLDAGAT----------SIEIALKEY-GEEWFQVVDNGCGISPNNFKVR 80 (824)
Q Consensus 30 ~~p~svVKELvENSlDAgAt----------~I~V~i~~~-G~~~I~V~DnG~GI~~~d~~~l 80 (824)
..+..|+-+||.||+.|... .|.|.+..+ +.-.|+|.|||.||++++++.+
T Consensus 237 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~i 298 (388)
T 1gkz_A 237 MPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRV 298 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHh
Confidence 35678999999999999643 799988764 4457999999999999987644
No 52
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.53 E-value=0.0042 Score=68.80 Aligned_cols=48 Identities=19% Similarity=0.412 Sum_probs=39.4
Q ss_pred cCHHHHHHHHHHhhcccC--------------CceEEEEEEe-CCeeeEEEEeCCCCcCccch
Q 041466 30 KDLSSAVKELVENSLDAG--------------ATSIEIALKE-YGEEWFQVVDNGCGISPNNF 77 (824)
Q Consensus 30 ~~p~svVKELvENSlDAg--------------At~I~V~i~~-~G~~~I~V~DnG~GI~~~d~ 77 (824)
.+...++.+||.||+|.| ...|.|.+.. ++.-.|+|.|||.||+++.+
T Consensus 105 ~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~ 167 (379)
T 1b3q_A 105 EEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKI 167 (379)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHH
Confidence 345567999999999997 5678887764 56668999999999999876
No 53
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=96.44 E-value=0.0048 Score=68.82 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHhhcccCCc---------eEEEEEEeC-CeeeEEEEeCCCCcCccchhhh--------------------
Q 041466 31 DLSSAVKELVENSLDAGAT---------SIEIALKEY-GEEWFQVVDNGCGISPNNFKVR-------------------- 80 (824)
Q Consensus 31 ~p~svVKELvENSlDAgAt---------~I~V~i~~~-G~~~I~V~DnG~GI~~~d~~~l-------------------- 80 (824)
.+..|+.+||.||+.+... .|.|.+..+ +.-.|+|.|||.||++++++.+
T Consensus 243 ~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~ 322 (407)
T 2q8g_A 243 HLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP 322 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCC
Confidence 4678999999999998643 689988764 4457999999999999876543
Q ss_pred ------HHHHHHHHHhhCCceEEEEEEcCCCc
Q 041466 81 ------AVFLCQAYALIAKGVRFVCTNTTGKN 106 (824)
Q Consensus 81 ------~~~~l~~~al~~p~v~f~l~~~~~~~ 106 (824)
++.+++.|+-.| +-.+.+....|.|
T Consensus 323 ~~G~GLGL~Ivr~i~~~~-gG~i~v~s~~g~G 353 (407)
T 2q8g_A 323 LAGFGYGLPISRLYAQYF-QGDLKLYSLEGYG 353 (407)
T ss_dssp SSCTTCHHHHHHHHHHHT-TCEEEEEEETTTE
T ss_pred CCCcCCCHHHHHHHHHHh-CCEEEEEEcCCCc
Confidence 346677777655 4456666554443
No 54
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.40 E-value=0.0049 Score=66.03 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHhhcccC--CceEEEEEEe-CCeeeEEEEeCCCCcCccchhhhHH--------------HHHHHHHhhCC
Q 041466 31 DLSSAVKELVENSLDAG--ATSIEIALKE-YGEEWFQVVDNGCGISPNNFKVRAV--------------FLCQAYALIAK 93 (824)
Q Consensus 31 ~p~svVKELvENSlDAg--At~I~V~i~~-~G~~~I~V~DnG~GI~~~d~~~l~~--------------~~l~~~al~~p 93 (824)
.+..|+.+||.||+++. +..|.|.+.. ++.-.|.|.|||.||++++++.++. .+++.++-.+.
T Consensus 244 ~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~~g~GlGL~i~~~~v~~~~ 323 (349)
T 3a0r_A 244 RIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQGTGLGLSICRKIIEDEH 323 (349)
T ss_dssp HHHHHHHHHHTHHHHTTCTTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTTTSSSCCCC------CCCTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEEecCCEEEEEEEECCCCCChHHHhhcCCCCccCCCCCccchHHHHHHHHHHhC
Confidence 46789999999999996 6788888764 4566799999999999998765432 56666665222
Q ss_pred ceEEEEEEc
Q 041466 94 GVRFVCTNT 102 (824)
Q Consensus 94 ~v~f~l~~~ 102 (824)
+-.+.+...
T Consensus 324 gg~i~~~~~ 332 (349)
T 3a0r_A 324 GGKIWTENR 332 (349)
T ss_dssp CSBCCEEEC
T ss_pred CCEEEEEeC
Confidence 334444443
No 55
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=95.89 E-value=0.0037 Score=70.07 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhcccCCc----------eEEEEEEeC-CeeeEEEEeCCCCcCccchhhhH
Q 041466 32 LSSAVKELVENSLDAGAT----------SIEIALKEY-GEEWFQVVDNGCGISPNNFKVRA 81 (824)
Q Consensus 32 p~svVKELvENSlDAgAt----------~I~V~i~~~-G~~~I~V~DnG~GI~~~d~~~l~ 81 (824)
+..|+.+||.||+.+... .|.|.+..+ +.-.|+|.|||.||++++++.++
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF 314 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLF 314 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHh
Confidence 678999999999999654 699988764 44479999999999999887553
No 56
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=95.74 E-value=0.0048 Score=68.47 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHhhcccCCc---------eEEEEEEeC-CeeeEEEEeCCCCcCccchhhh
Q 041466 31 DLSSAVKELVENSLDAGAT---------SIEIALKEY-GEEWFQVVDNGCGISPNNFKVR 80 (824)
Q Consensus 31 ~p~svVKELvENSlDAgAt---------~I~V~i~~~-G~~~I~V~DnG~GI~~~d~~~l 80 (824)
.+..|+.+||.||+.+... .|.|.+..+ +.-.|+|.|||.||++++++.+
T Consensus 230 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~i 289 (394)
T 2e0a_A 230 HLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRL 289 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHH
Confidence 4678999999999998543 499988764 4457999999999999987633
No 57
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=95.62 E-value=0.0048 Score=68.47 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHhhcccCCc---------eEEEEEEeC-CeeeEEEEeCCCCcCccchhhh
Q 041466 31 DLSSAVKELVENSLDAGAT---------SIEIALKEY-GEEWFQVVDNGCGISPNNFKVR 80 (824)
Q Consensus 31 ~p~svVKELvENSlDAgAt---------~I~V~i~~~-G~~~I~V~DnG~GI~~~d~~~l 80 (824)
.+..|+.+||.||+.+... .|.|.+..+ +.-.|+|.|||.||++++++.+
T Consensus 231 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~i 290 (394)
T 2btz_A 231 HLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERL 290 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHH
Confidence 4678999999999998532 489988764 4447999999999999887643
No 58
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=94.53 E-value=0.098 Score=53.85 Aligned_cols=73 Identities=14% Similarity=-0.031 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHhhcccCC--ceEEEEEEe-CCeeeEEEEeCCCCcC--ccchhhhHH--------------HHHHHHHhh
Q 041466 31 DLSSAVKELVENSLDAGA--TSIEIALKE-YGEEWFQVVDNGCGIS--PNNFKVRAV--------------FLCQAYALI 91 (824)
Q Consensus 31 ~p~svVKELvENSlDAgA--t~I~V~i~~-~G~~~I~V~DnG~GI~--~~d~~~l~~--------------~~l~~~al~ 91 (824)
....|+-.|+.||++|-. ..|.|.+.. +|.-.|+|.|+|.||. ++.++.++. .++++++-.
T Consensus 146 ~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~~G~GLGLai~~~iv~~ 225 (247)
T 4fpp_A 146 PSSRAVLNIAQIAASALPAGGVATVKGVAADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEGLGGPWVQAAYLNALVRA 225 (247)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCCCCccHHHHHHHHHHHH
Confidence 345788899999999843 468887764 5677899999998855 444443332 788888888
Q ss_pred CCceEEEEEEcCC
Q 041466 92 AKGVRFVCTNTTG 104 (824)
Q Consensus 92 ~p~v~f~l~~~~~ 104 (824)
| +-++.+....|
T Consensus 226 h-GG~i~v~s~~~ 237 (247)
T 4fpp_A 226 A-GGQIAVEIGED 237 (247)
T ss_dssp T-TCEEEEEEETT
T ss_pred c-CCEEEEEEcCC
Confidence 8 54666766543
No 59
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=94.49 E-value=0.024 Score=71.05 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=36.9
Q ss_pred cCHHHHHHHHHHhhcc---cC--CceEEEEEE-eCCeeeEEEEeCCCCcCcc
Q 041466 30 KDLSSAVKELVENSLD---AG--ATSIEIALK-EYGEEWFQVVDNGCGISPN 75 (824)
Q Consensus 30 ~~p~svVKELvENSlD---Ag--At~I~V~i~-~~G~~~I~V~DnG~GI~~~ 75 (824)
.-+.-+|.|.|.||+| || .++|.|.|. +.| +|+|.|||.||+-+
T Consensus 58 ~GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~d~--sisV~DnGRGIPvd 107 (1177)
T 4gfh_A 58 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH--TIEVKNDGKGIPIE 107 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT--EEEEEECSSCCCCS
T ss_pred ceeeeEeeEEEEChHhHHhhCCCCCeEEEEEECCCC--EEEEEecCCccccc
Confidence 3567899999999999 45 478999997 456 69999999999965
No 60
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=94.31 E-value=0.015 Score=60.44 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=22.2
Q ss_pred eEEEEEEeCCeeeEEEEeCCCCcCccchh
Q 041466 50 SIEIALKEYGEEWFQVVDNGCGISPNNFK 78 (824)
Q Consensus 50 ~I~V~i~~~G~~~I~V~DnG~GI~~~d~~ 78 (824)
.|.|.+...+ ..|.|.|||.||+++|+.
T Consensus 120 ~I~I~~Dk~~-~tLtI~DNGiGMTkeeL~ 147 (272)
T 3ied_A 120 IIKIKPDKEK-KTLTITDNGIGMDKSELI 147 (272)
T ss_dssp CEEEEEETTT-TEEEEEECSCCCCHHHHH
T ss_pred EEEEEEeCCC-CEEEEEeCCCCCCHHHHH
Confidence 5677665443 479999999999999986
No 61
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=88.81 E-value=0.38 Score=47.98 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=33.1
Q ss_pred HHHHHhhccc--------CCceEEEEEEeC---CeeeEEEEeCCCCcCccchhhh
Q 041466 37 KELVENSLDA--------GATSIEIALKEY---GEEWFQVVDNGCGISPNNFKVR 80 (824)
Q Consensus 37 KELvENSlDA--------gAt~I~V~i~~~---G~~~I~V~DnG~GI~~~d~~~l 80 (824)
-.|++|+++| +-..|.|.+... +.-.|+|.|+|.||+.+.++.+
T Consensus 111 gnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~i 165 (192)
T 1ixm_A 111 AKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDI 165 (192)
T ss_dssp HHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC--
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHH
Confidence 4566666666 357899999874 5557999999999999988744
No 62
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=88.36 E-value=0.31 Score=54.02 Aligned_cols=63 Identities=25% Similarity=0.323 Sum_probs=43.4
Q ss_pred cccCHHHHHHHHHHhhcccC-----CceEEEEEEeC--CeeeEEEEeCCCCcCccch---hhhHHHHHHHHHh
Q 041466 28 VIKDLSSAVKELVENSLDAG-----ATSIEIALKEY--GEEWFQVVDNGCGISPNNF---KVRAVFLCQAYAL 90 (824)
Q Consensus 28 Vi~~p~svVKELvENSlDAg-----At~I~V~i~~~--G~~~I~V~DnG~GI~~~d~---~~l~~~~l~~~al 90 (824)
.+.+..-||-|||.||+.-| ...|.|++... +.-.|+|.|+|.|++..+- ..+++.++++++-
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~~~~~~~G~GL~lv~~l~~ 366 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRDGARGRGRGLAMAEALVS 366 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC------------CHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCCCCCCCCCcHHHHHHHHHH
Confidence 45678889999999999986 67888888753 4568999999999987521 1344477776664
No 63
>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens}
Probab=78.74 E-value=6.1 Score=41.51 Aligned_cols=114 Identities=16% Similarity=0.229 Sum_probs=74.5
Q ss_pred CCCCcEEEEEEeCcEEEEEeCCcEEEEehhhHHHHHHHHHHhcccC-CCccccccccee-e------------cC-----
Q 041466 613 DFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLSQSTV-LNQQPLLRPLKL-D------------LT----- 673 (824)
Q Consensus 613 ~~~~~~vigQ~~~~fIl~~~~~~L~iIDQHAAhERi~yE~l~~~~~-~~sQ~Ll~P~~l-~------------Ls----- 673 (824)
.|.+..+||-++..+.|++.+..||+||-.+.-+=+-|...+...+ +..-.|-.|+.| + .+
T Consensus 57 i~~~~tfVG~VD~~~aLiQ~~tkLYLvd~~~l~~ElFYQ~~L~~FgNfg~i~L~~P~~L~dLl~~al~~~~~~~~e~d~~ 136 (284)
T 3rbn_A 57 MLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGP 136 (284)
T ss_dssp HHHTCEEEEESSSSEEEEEETTEEEEEEHHHHHHHHHHHHHHHSTTCCEEEEEEEEEEHHHHHHHHHTSGGGTCCTTSCC
T ss_pred HHHhCeEEEEECCCeeEEEeCCeEEEecHHHHHHHHHHHHHHHHhcCCCeEeeCCCCCHHHHHHHHhhcccccCCccccc
Confidence 3567899999999999999999999999998887777777777643 233333333321 0 00
Q ss_pred -----HHHHHHHHHHHHHH-HHcCeEEEecCCCCCccEEEEEeeCCCccccCC-hhhHHHHHHHHHhc
Q 041466 674 -----PEEEVVASMHMDII-RKNGFSLEEDPHALAGLRFRLKAVPFSKKITFG-VEDVKDLISTLADN 734 (824)
Q Consensus 674 -----~~e~~~l~~~~~~L-~~~Gf~~e~~~~~~~~~~v~l~~vP~~~~~~l~-~~d~~ell~~l~~~ 734 (824)
..-...|.++.+.| +-++++|+.. | .|.++|.++..... ...+-.||..|...
T Consensus 137 ~~~~~e~i~~~L~~~~eML~EYFsi~Id~~-----g---~L~slPlLl~~Y~P~l~~LP~FllrL~t~ 196 (284)
T 3rbn_A 137 KEGLAEYIVEFLKKKAEMLADYFSLEIDEE-----G---NLIGLPLLIDNYVPPLEGLPIFILRLATE 196 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCEECTT-----S---EEEEEEECSTTCCCCGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeEEEeCC-----C---cEEEechhhcCCCCChHHHHHHHHHHhcc
Confidence 11124556666655 4567777532 2 38999998765443 34566777777654
No 64
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=62.93 E-value=4.3 Score=37.21 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCCCce
Q 041466 774 DALGRNEMQKILEHLADLNSPWNCPHGRPT 803 (824)
Q Consensus 774 d~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt 803 (824)
..++.+..++|.+.| ++|..||||.|+
T Consensus 111 ~~~~~~~~~~L~~~l---~~~~~~p~g~~i 137 (139)
T 2x4h_A 111 YLIPEEIIDKLYNYL---GKPSYCPHGLEI 137 (139)
T ss_dssp GGSCHHHHHHHHHHT---TCCSBCTTSCBC
T ss_pred hcCCHHHHHHHHHHh---CCCCCCCCCCCC
Confidence 346777777776654 689999999996
No 65
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=57.25 E-value=4.6 Score=40.52 Aligned_cols=30 Identities=20% Similarity=0.475 Sum_probs=24.0
Q ss_pred cCCCCCHHHHHHHHHHHhccCCCCCCCCCCcee
Q 041466 772 IGDALGRNEMQKILEHLADLNSPWNCPHGRPTM 804 (824)
Q Consensus 772 ~Gd~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~ 804 (824)
....+|.+...+|..-| .+|-.||||+|+-
T Consensus 100 lEh~~s~~~~~~l~~~l---~~p~~~Phg~~Ip 129 (214)
T 3hrs_A 100 LEHTVSDHFVERLDQLL---DYPKACPHGGTIP 129 (214)
T ss_dssp HHTTSCHHHHHHHHHHT---TCCSBCTTSCBCC
T ss_pred HhccCCHHHHHHHHHHh---CCCCCCcCcCCcC
Confidence 35778888888888777 5688999999854
No 66
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=56.20 E-value=6.1 Score=39.93 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=24.1
Q ss_pred cCCCCCHHHHHHHHHHHhccCCCCCCCCCCcee
Q 041466 772 IGDALGRNEMQKILEHLADLNSPWNCPHGRPTM 804 (824)
Q Consensus 772 ~Gd~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~ 804 (824)
.-+.||.++..+|.+-|. +|-.||||.|+-
T Consensus 104 le~~ls~e~~~~L~~~L~---~~~~~p~g~~ip 133 (230)
T 1fx7_A 104 WEHVMSEDVERRLVKVLN---NPTTSPFGNPIP 133 (230)
T ss_dssp HTTTCCHHHHHHHHHHTT---SCCBCTTSCBCT
T ss_pred HHhcCCHHHHHHHHHHhC---CCCCCCCCCCCC
Confidence 346799999999998875 567899999853
No 67
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=32.21 E-value=23 Score=35.61 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCCCCCcee
Q 041466 773 GDALGRNEMQKILEHLADLNSPWNCPHGRPTM 804 (824)
Q Consensus 773 Gd~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~ 804 (824)
-..+|.+-..+|..-| .+|-.||||.|+-
T Consensus 105 eh~~s~~~~~~l~~~l---~~~~~~phg~pip 133 (226)
T 2qq9_A 105 EHVMSDEVERRLVKVL---KDVSRSPFGNPIP 133 (226)
T ss_dssp TTTCCHHHHHHHHHHS---SCCSBCTTSCBCC
T ss_pred HhhCCHHHHHHHHHHh---CCCCCCCCCCCCC
Confidence 4567877777777766 5788999999864
No 68
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=24.39 E-value=1.5e+02 Score=28.15 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=28.1
Q ss_pred ceeecCHHHHHHHHHHHHHHHHcCeEEEecCCCCCccEEEEEeeCCC
Q 041466 668 LKLDLTPEEEVVASMHMDIIRKNGFSLEEDPHALAGLRFRLKAVPFS 714 (824)
Q Consensus 668 ~~l~Ls~~e~~~l~~~~~~L~~~Gf~~e~~~~~~~~~~v~l~~vP~~ 714 (824)
-.|+--|++..-+..-.= =-..||.+|--. +||+.|.|..||..
T Consensus 32 ~~F~CvPSQINYVl~TRF-T~e~GY~VESkR--GGGGyIRI~kv~~~ 75 (155)
T 3h0d_A 32 NKFRCVPSQINYVINTRF-TLERGYIVESKR--GGGGYIRIMKVKTK 75 (155)
T ss_dssp HHTTSCTHHHHHHHHHHS-SGGGTEEEEEEC--STTCEEEEEEEEEC
T ss_pred HhcCCChhhceEEEeeee-cCCCceEEEeec--CCCceEEEEEeccC
Confidence 345555555444433220 036799999865 56789999999974
Done!