BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041468
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
Atwrky4
pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
W-Box Dna
Length = 78
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 26 DDGYTWRKYGQKEILGSKFPRIARGATT---DIRMDALQGKKLQQLSDDPVSFEITYHGE 82
DDGY WRKYGQK + G+ +PR TT +R K +++ + DP + TY G+
Sbjct: 18 DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVR------KHVERAATDPKAVVTTYEGK 71
Query: 83 HTCQL 87
H L
Sbjct: 72 HNHDL 76
>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof
Atwrky1, An Sa-Induced And Partially Npr1-Dependent
Transcription Factor
Length = 76
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 26 DDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEH 83
+DGY WRKYGQK + GS +PR ++ K +++ S D TY G+H
Sbjct: 15 NDGYRWRKYGQKSVKGSPYPRSYYRCSSP---GCPVKKHVERSSHDTKLLITTYEGKH 69
>pdb|3VAY|A Chain A, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
pdb|3VAY|B Chain B, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 230
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
Query: 66 QQLSDDPVSFEITYHGEHTCQLSLENPPVPSSLPELEI 103
QQL+D+ SFE+ HG H Q+ P P LEI
Sbjct: 87 QQLADE--SFEVFLHGRHQVQI------FPEVQPTLEI 116
>pdb|3G1W|A Chain A, Crystal Structure Of Sugar Abc Transporter (Sugar-Binding
Protein) From Bacillus Halodurans
pdb|3G1W|B Chain B, Crystal Structure Of Sugar Abc Transporter (Sugar-Binding
Protein) From Bacillus Halodurans
Length = 305
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 32 RKYGQKEILGSKFPRIARGATTDIRMDALQGKKL--QQLSDDP 72
R G KE L ++FP I A D R D+L +++ Q L D P
Sbjct: 144 RTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYP 186
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 65 LQQLSDDPVSFEITYHGEHTCQLSLENPPVPSSLPELEIAQ 105
LQ++ + S+ TY + QLS+ P PS L++AQ
Sbjct: 169 LQRVRQELDSYSATYANGYHFQLSIAAPAGPSHYNVLKLAQ 209
>pdb|4H7A|A Chain A, Crystal Structure Of Casb From Thermus Thermophilus
pdb|4H7A|B Chain B, Crystal Structure Of Casb From Thermus Thermophilus
Length = 168
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 4/32 (12%)
Query: 88 SLENPP--VPSSLPELE--IAQGDWQPKKRES 115
SL PP P ++P +E +A+GDW+ ++RE+
Sbjct: 42 SLAFPPGAYPRAMPYVEPFLAKGDWRQEEREA 73
>pdb|3LZC|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
pdb|3LZC|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
pdb|3LZD|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
4fe-4s Cluster
pdb|3LZD|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
4fe-4s Cluster
Length = 378
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 16 VRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSF 75
V V P++P DD WR K +L K I G + D + G + SD+P F
Sbjct: 319 VVVACPRVPLDDYGAWR----KPVLTPKEVEILLGLREEYEFDEILGGPRE--SDEP--F 370
Query: 76 EITYH 80
I+ H
Sbjct: 371 GISIH 375
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,907,430
Number of Sequences: 62578
Number of extensions: 149352
Number of successful extensions: 225
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 12
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)