Query 041468
Match_columns 124
No_of_seqs 111 out of 597
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 12:22:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 7.9E-37 2.7E-41 207.1 6.9 74 13-89 2-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 2.1E-36 7.1E-41 205.9 5.4 70 16-88 8-77 (78)
3 2rpr_A Flywch-type zinc finger 86.7 0.36 1.2E-05 31.6 2.3 51 25-88 24-74 (87)
4 1cz6_A Protein (androctonin); 44.3 6.9 0.00024 20.6 0.7 8 47-54 16-23 (26)
5 1xiw_B T-cell surface glycopro 37.3 19 0.00066 23.0 2.2 49 26-85 17-75 (79)
6 1igq_A Transcriptional repress 22.0 46 0.0016 21.1 1.8 15 21-35 27-41 (62)
7 1xiw_A T-cell surface glycopro 17.3 85 0.0029 21.6 2.5 51 25-85 32-101 (105)
8 3shs_A HOC head outer capsid p 13.0 2.4E+02 0.0081 22.8 4.4 59 4-63 10-81 (304)
9 1ter_A Tertiapin; toxin; NMR { 13.0 29 0.00098 18.1 -0.7 11 29-39 13-23 (26)
10 3kgb_A Thymidylate synthase 1/ 10.3 39 0.0013 27.2 -1.1 11 27-37 114-124 (294)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=7.9e-37 Score=207.11 Aligned_cols=74 Identities=30% Similarity=0.485 Sum_probs=67.7
Q ss_pred ccEEEecCCCCCCCCCccccccCceeccCCCCCcceeeccccccccCcccccceeecCCCCEEEEEEceeccCCCCC
Q 041468 13 QRTVRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTCQLSL 89 (124)
Q Consensus 13 k~~~~v~~~~~~~~Dgy~WRKYGQK~Ikgs~~pRsYYrCt~~~~~~C~akK~Vqr~~~Dp~~~~vtY~GeHth~~~~ 89 (124)
+.+|+..+...+++|||.|||||||.|+|++|||+|||||+. ||+|+|+|||+++||.+|+|||+|+|||+.|.
T Consensus 2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~---gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP---GCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECST---TCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCC---CCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 345666666688999999999999999999999999999986 99999999999999999999999999999874
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=2.1e-36 Score=205.91 Aligned_cols=70 Identities=36% Similarity=0.587 Sum_probs=64.1
Q ss_pred EEecCCCCCCCCCccccccCceeccCCCCCcceeeccccccccCcccccceeecCCCCEEEEEEceeccCCCC
Q 041468 16 VRVDAPQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTCQLS 88 (124)
Q Consensus 16 ~~v~~~~~~~~Dgy~WRKYGQK~Ikgs~~pRsYYrCt~~~~~~C~akK~Vqr~~~Dp~~~~vtY~GeHth~~~ 88 (124)
++..+...+++|||.|||||||.|+|++|||+|||||+. ||+|+|+|||+++||.+|+|||+|+|||+.|
T Consensus 8 ~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~---gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 8 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP---GCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECS---SCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred EeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcC---CCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 333444578999999999999999999999999999996 9999999999999999999999999999876
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=86.73 E-value=0.36 Score=31.55 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=31.8
Q ss_pred CCCCccccccCceeccCCCCCcceeeccccccccCcccccceeecCCCCEEEEEEceeccCCCC
Q 041468 25 EDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTCQLS 88 (124)
Q Consensus 25 ~~Dgy~WRKYGQK~Ikgs~~pRsYYrCt~~~~~~C~akK~Vqr~~~Dp~~~~vtY~GeHth~~~ 88 (124)
.-|||.-.+-- ....+.|.+|+.....+|+|+-... .++ +.-.+.|||++.
T Consensus 24 v~~Gy~Y~~~~------~~~~~~yWrC~~~~~~kCrARi~T~--~~~-----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 24 VHESFLYRKEK------AAGEKVYWMCRDQARLGCRSRAITQ--GHR-----IMVMRSHCHQPD 74 (87)
T ss_dssp EETTEEEEEEE------ECSSCEEEEEGGGTTSCCCCEEEEE--TTE-----EEECSCCSSCCC
T ss_pred EECCEEEEeee------cCCCcEEEEecCCCCCCCCEEEEEc--CCC-----EECCCCcCCCCc
Confidence 34777666421 1234689999997666999964433 222 335788999643
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=44.34 E-value=6.9 Score=20.57 Aligned_cols=8 Identities=13% Similarity=-0.122 Sum_probs=6.8
Q ss_pred ceeecccc
Q 041468 47 IARGATTD 54 (124)
Q Consensus 47 sYYrCt~~ 54 (124)
.||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999975
No 5
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=37.30 E-value=19 Score=23.04 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=28.4
Q ss_pred CCCccccccCcee--------cc--CCCCCcceeeccccccccCcccccceeecCCCCEEEEEEceeccC
Q 041468 26 DDGYTWRKYGQKE--------IL--GSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTC 85 (124)
Q Consensus 26 ~Dgy~WRKYGQK~--------Ik--gs~~pRsYYrCt~~~~~~C~akK~Vqr~~~Dp~~~~vtY~GeHth 85 (124)
..++.|.|-|... +. ...-||++|.|... ..+... .+.+.|-|.-.+||
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~~--------~~~~~~---~s~LqV~yR~C~NC 75 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGT--------DIYKDK---ESTVQVHYRMCQSC 75 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-------------------CEEEEEEEECSCC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecCC--------CCCCcc---cEEEEEEhhhcCCc
Confidence 4568999988642 33 33559999999544 111110 12578888888877
No 6
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=22.00 E-value=46 Score=21.07 Aligned_cols=15 Identities=40% Similarity=0.997 Sum_probs=12.1
Q ss_pred CCCCCCCCccccccC
Q 041468 21 PQIPEDDGYTWRKYG 35 (124)
Q Consensus 21 ~~~~~~Dgy~WRKYG 35 (124)
..-|+.+|+.|-||-
T Consensus 27 nrRps~~G~~wiKyE 41 (62)
T 1igq_A 27 NRRPPAEGYAWLKYE 41 (62)
T ss_dssp TBCCSSTTEEEEEET
T ss_pred ccCCCcCceEEEEEe
Confidence 336889999999984
No 7
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=17.28 E-value=85 Score=21.56 Aligned_cols=51 Identities=8% Similarity=-0.001 Sum_probs=30.5
Q ss_pred CCCCccccccCcee----------------ccCCCC---CcceeeccccccccCcccccceeecCCCCEEEEEEceeccC
Q 041468 25 EDDGYTWRKYGQKE----------------ILGSKF---PRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTC 85 (124)
Q Consensus 25 ~~Dgy~WRKYGQK~----------------Ikgs~~---pRsYYrCt~~~~~~C~akK~Vqr~~~Dp~~~~vtY~GeHth 85 (124)
+++...|.+-|+.. +.++-. ||++|.|... +=... +-...|.|-|.-..||
T Consensus 32 ~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~~~---~~~~~-------~~~~~lyvk~RvCqNC 101 (105)
T 1xiw_A 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR---GSKPE-------DANFYLYLRARVCENC 101 (105)
T ss_dssp TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEET---TSCGG-------GCCEEEEEEECCCTTC
T ss_pred CCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEccC---CCCCC-------cccEEEEEEEEecCCc
Confidence 33559999988652 445533 8999999633 10110 0013466777777776
No 8
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=13.04 E-value=2.4e+02 Score=22.83 Aligned_cols=59 Identities=12% Similarity=-0.006 Sum_probs=36.6
Q ss_pred CCCCcccccccEEEecCCCCCC---CCCccccccCceeccCCCC----------CcceeeccccccccCcccc
Q 041468 4 HPYSIVQKSQRTVRVDAPQIPE---DDGYTWRKYGQKEILGSKF----------PRIARGATTDIRMDALQGK 63 (124)
Q Consensus 4 ~~~~~~~k~k~~~~v~~~~~~~---~Dgy~WRKYGQK~Ikgs~~----------pRsYYrCt~~~~~~C~akK 63 (124)
++..+.+-...++.+.....-+ .=.|+|.|=|+. |.|... .-+.|+|.-.+..+|.+..
T Consensus 10 ~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~-IsGaT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tS 81 (304)
T 3shs_A 10 NKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQP-HENNTATLTVADATSENAGSYKVTVQDTDTMTSVE 81 (304)
T ss_dssp SCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEE-CSCCSSEEEESSCCGGGCEEEEEEEEETTTCCEEE
T ss_pred CCccccCCCCEEEEEEecCCCCCCCCceEEEEECCcc-ccCCcceEEeeeccccCCeEEEEEEEECCCCeeee
Confidence 3455556666666665443322 235999998855 555432 2268999987778998643
No 9
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=13.00 E-value=29 Score=18.14 Aligned_cols=11 Identities=36% Similarity=0.894 Sum_probs=7.8
Q ss_pred ccccccCceec
Q 041468 29 YTWRKYGQKEI 39 (124)
Q Consensus 29 y~WRKYGQK~I 39 (124)
..|+|.|.|..
T Consensus 13 mcwkkcgkk~~ 23 (26)
T 1ter_A 13 MCWKKCGKKXX 23 (26)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHhCcccc
Confidence 57999998864
No 10
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=10.34 E-value=39 Score=27.23 Aligned_cols=11 Identities=36% Similarity=1.289 Sum_probs=8.5
Q ss_pred CCccccccCce
Q 041468 27 DGYTWRKYGQK 37 (124)
Q Consensus 27 Dgy~WRKYGQK 37 (124)
=|++||.+|.+
T Consensus 114 YG~QwR~~~~~ 124 (294)
T 3kgb_A 114 YGFQWRHFGAR 124 (294)
T ss_dssp HHHHHHSBTCC
T ss_pred cchhhhcCCCc
Confidence 36899999864
Done!