Query 041468
Match_columns 124
No_of_seqs 111 out of 597
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 12:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041468.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041468hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wj2a_ g.79.1.1 (A:) WRKY DNA 100.0 1.9E-37 1.4E-41 206.1 5.4 66 21-89 6-71 (71)
2 d2plga1 d.198.1.2 (A:3-154) Un 31.4 5.6 0.00041 27.2 0.4 15 25-39 44-59 (152)
3 d2nxyb2 b.1.1.3 (B:1098-1181) 23.1 12 0.00091 21.4 0.9 43 11-54 14-65 (84)
4 d1x3ca1 g.37.1.1 (A:8-68) Zinc 22.9 9.5 0.00069 22.3 0.3 32 48-88 20-51 (61)
5 d2qqra1 b.34.9.1 (A:897-955) J 19.4 18 0.0013 21.3 1.0 20 34-54 5-24 (59)
6 d1qypa_ g.41.3.1 (A:) RBP9 sub 18.5 14 0.00098 21.3 0.3 9 26-34 48-56 (57)
7 d2j7ja2 g.37.1.1 (A:29-57) Tra 18.3 19 0.0014 18.1 0.8 10 49-61 4-13 (29)
8 d1igqa_ b.34.1.3 (A:) Transcri 13.9 45 0.0033 19.1 1.8 21 15-35 13-33 (54)
9 d1tf3a1 g.37.1.1 (A:1-40) Tran 12.4 32 0.0023 17.5 0.7 11 49-62 4-14 (31)
10 d1tf5a2 a.172.1.1 (A:571-780) 11.9 31 0.0023 23.4 0.8 12 27-38 166-177 (210)
No 1
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=1.9e-37 Score=206.06 Aligned_cols=66 Identities=36% Similarity=0.586 Sum_probs=61.9
Q ss_pred CCCCCCCCccccccCceeccCCCCCcceeeccccccccCcccccceeecCCCCEEEEEEceeccCCCCC
Q 041468 21 PQIPEDDGYTWRKYGQKEILGSKFPRIARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTCQLSL 89 (124)
Q Consensus 21 ~~~~~~Dgy~WRKYGQK~Ikgs~~pRsYYrCt~~~~~~C~akK~Vqr~~~Dp~~~~vtY~GeHth~~~~ 89 (124)
.....||||.|||||||.|+|+++||+||||++. ||+|+|+|||+++||.+|+|||+|+|||+.|.
T Consensus 6 ~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~---~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps 71 (71)
T d1wj2a_ 6 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP---GCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 71 (71)
T ss_dssp CCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECS---SCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ccccCCCCcEecccCceeccCCCCceEEEEcccc---CCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence 3467899999999999999999999999999997 99999999999999999999999999998763
No 2
>d2plga1 d.198.1.2 (A:3-154) Uncharacterized protein Tll0839 {Synechococcus elongatus [TaxId: 32046]}
Probab=31.42 E-value=5.6 Score=27.23 Aligned_cols=15 Identities=40% Similarity=1.001 Sum_probs=12.5
Q ss_pred CCCCcccc-ccCceec
Q 041468 25 EDDGYTWR-KYGQKEI 39 (124)
Q Consensus 25 ~~Dgy~WR-KYGQK~I 39 (124)
.+||+.|+ +||+-.+
T Consensus 44 ~~~g~~W~~~~Gs~~V 59 (152)
T d2plga1 44 TDSGKIWMFRYGSAEV 59 (152)
T ss_dssp ETTEEEEEEEETTEEE
T ss_pred CCCCceEEEEcCCEEE
Confidence 57899999 9998854
No 3
>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.14 E-value=12 Score=21.39 Aligned_cols=43 Identities=19% Similarity=0.096 Sum_probs=28.1
Q ss_pred ccccEEEecCCCCCCCCCccccccCceeccCCCCCc---------ceeecccc
Q 041468 11 KSQRTVRVDAPQIPEDDGYTWRKYGQKEILGSKFPR---------IARGATTD 54 (124)
Q Consensus 11 k~k~~~~v~~~~~~~~Dgy~WRKYGQK~Ikgs~~pR---------sYYrCt~~ 54 (124)
-...++.+.+...|... +.|++-|...+.+...-+ +.|.|.-.
T Consensus 14 G~~~~L~C~~~g~p~P~-i~W~~~~~~~~~~~~~l~i~~v~~~DsG~Y~C~a~ 65 (84)
T d2nxyb2 14 GQSLTLTLESPPGSSPS-VQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVL 65 (84)
T ss_dssp TCCEEEEEECCTTCCCE-EEEECTTCCEEEESSEEEESSCCGGGCEEEEEEEE
T ss_pred CCeEEEEEEeEcCCchh-eEEEeecccceeeeeeeeeeecccccccEEEEEEE
Confidence 34556666666666655 999999888776654321 46777655
No 4
>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.94 E-value=9.5 Score=22.34 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=24.3
Q ss_pred eeeccccccccCcccccceeecCCCCEEEEEEceeccCCCC
Q 041468 48 ARGATTDIRMDALQGKKLQQLSDDPVSFEITYHGEHTCQLS 88 (124)
Q Consensus 48 YYrCt~~~~~~C~akK~Vqr~~~Dp~~~~vtY~GeHth~~~ 88 (124)
=|||.|. ||-|-=.+|+. ++..|...|-.+.|
T Consensus 20 pyrcvhq---gc~aaftiq~n------lilhy~avh~s~lp 51 (61)
T d1x3ca1 20 PYRCVHQ---GCFAAFTIQQN------LILHYQAVHKSDLP 51 (61)
T ss_dssp SCBCCST---TCCCBCSSHHH------HHHHHHHHSSSCCC
T ss_pred ceeeecc---chhhhhhhhhh------HHHHHHHHhhhcCc
Confidence 4899997 99998888853 55778888855544
No 5
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.43 E-value=18 Score=21.30 Aligned_cols=20 Identities=30% Similarity=0.079 Sum_probs=13.9
Q ss_pred cCceeccCCCCCcceeecccc
Q 041468 34 YGQKEILGSKFPRIARGATTD 54 (124)
Q Consensus 34 YGQK~Ikgs~~pRsYYrCt~~ 54 (124)
-||+.|-...+-| ||+|.--
T Consensus 5 ~Gq~VI~KhkNgr-yY~c~V~ 24 (59)
T d2qqra1 5 AGQKVISKHKNGR-FYQCEVV 24 (59)
T ss_dssp TTCEEEEECTTSS-EEEEEEE
T ss_pred cccEEEEEccCCc-EEEEEEE
Confidence 3888887666644 8888654
No 6
>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}
Probab=18.51 E-value=14 Score=21.33 Aligned_cols=9 Identities=56% Similarity=1.147 Sum_probs=6.9
Q ss_pred CCCcccccc
Q 041468 26 DDGYTWRKY 34 (124)
Q Consensus 26 ~Dgy~WRKY 34 (124)
.=|+.||.|
T Consensus 48 ~Cg~~wrey 56 (57)
T d1qypa_ 48 KCGHTWRSY 56 (57)
T ss_dssp SSCCEEECC
T ss_pred CCCCcceeC
Confidence 346899988
No 7
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=18.31 E-value=19 Score=18.14 Aligned_cols=10 Identities=0% Similarity=-0.047 Sum_probs=8.3
Q ss_pred eeccccccccCcc
Q 041468 49 RGATTDIRMDALQ 61 (124)
Q Consensus 49 YrCt~~~~~~C~a 61 (124)
|+|.|. ||--
T Consensus 4 y~c~he---gcdk 13 (29)
T d2j7ja2 4 YECPHE---GCDK 13 (29)
T ss_dssp EECCST---TCCC
T ss_pred ccCCcc---Cccc
Confidence 899998 8864
No 8
>d1igqa_ b.34.1.3 (A:) Transcriptional repressor protein KorB {Escherichia coli [TaxId: 562]}
Probab=13.92 E-value=45 Score=19.07 Aligned_cols=21 Identities=33% Similarity=0.740 Sum_probs=15.0
Q ss_pred EEEecCCCCCCCCCccccccC
Q 041468 15 TVRVDAPQIPEDDGYTWRKYG 35 (124)
Q Consensus 15 ~~~v~~~~~~~~Dgy~WRKYG 35 (124)
..++-...-|+.-|+.|-||.
T Consensus 13 ~Arl~LnrRP~~~G~awlkyE 33 (54)
T d1igqa_ 13 PARLILNRRPPAEGYAWLKYE 33 (54)
T ss_dssp EEEECTTBCCSSTTEEEEEET
T ss_pred hhhhhhcCCCcccceEEEEEe
Confidence 334444447888999999994
No 9
>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=12.41 E-value=32 Score=17.53 Aligned_cols=11 Identities=9% Similarity=-0.170 Sum_probs=9.3
Q ss_pred eeccccccccCccc
Q 041468 49 RGATTDIRMDALQG 62 (124)
Q Consensus 49 YrCt~~~~~~C~ak 62 (124)
|-|+++ +|.|.
T Consensus 4 ~iCsf~---dC~A~ 14 (31)
T d1tf3a1 4 YICSFA---DCGAA 14 (31)
T ss_dssp EECSSG---GGCCE
T ss_pred eEeeCC---Ccchh
Confidence 779998 99885
No 10
>d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of SecA {Bacillus subtilis [TaxId: 1423]}
Probab=11.90 E-value=31 Score=23.37 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=9.7
Q ss_pred CCccccccCcee
Q 041468 27 DGYTWRKYGQKE 38 (124)
Q Consensus 27 Dgy~WRKYGQK~ 38 (124)
.|-.||=||||.
T Consensus 166 ~~I~lR~ygQkD 177 (210)
T d1tf5a2 166 QGIHLRAYAQTN 177 (210)
T ss_dssp HTGGGTSCSSSC
T ss_pred HHHHHHHHcCCC
Confidence 367899999986
Done!