BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041470
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 117/278 (42%), Gaps = 49/278 (17%)
Query: 118 DGSKCRQWIQFKKFGGLFIRGVGSINGQGS--------NWWKLSC-------KHDKIGLV 162
+G C +I I G G+I+GQG +WW+L+ K + L+
Sbjct: 95 NGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLI 154
Query: 163 VAN-SNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSI 221
N S N + +++ +SP H+ F A TI P + NTDGI S N++I
Sbjct: 155 QINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITI 214
Query: 222 AHSIISTGDDCVSIGDGSSHLNITNIFC-----GPGHGISIGSLGMKGRNEKVEFVHVNN 276
A+S I+TGDD V+I NI G GHG+SIGS M N V V++
Sbjct: 215 AYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGSETMGVYN-----VTVDD 269
Query: 277 VSFTETQNGVRIKT-----------------WQGSYNPIVIDQYYCPHKHCKNKTLAVKI 319
+ T NG+RIK+ + PIVID Y K +
Sbjct: 270 LKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVY----EKKEGSNVPDW 325
Query: 320 SDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHL 357
SD+T+ + TS + V + + + MK++ L
Sbjct: 326 SDITFKDV--TSETKGVVVLNGENAKKPIEVTMKNVKL 361
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 118/260 (45%), Gaps = 37/260 (14%)
Query: 142 INGQGSNWWKLSCKHDKIGLVVANSNNVH-IDDLTFE-----DSPQMHIAFERSTNIEAT 195
I+G GS WW K G +H ++D TF+ ++P I+ + +TN+
Sbjct: 80 IDGDGSRWWD--SKGTNGGKTKPKFMYIHDVEDSTFKGINIKNTPVQAISVQ-ATNVHLN 136
Query: 196 NLTI-MAPGNSP---NTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGP 251
+ TI + G+ NTDG I S+ V I+ + + DDC++I G S ++ T C
Sbjct: 137 DFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSGES-ISFTGGTCSG 195
Query: 252 GHGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTW--------QGSYN------- 296
GHG+SIGS+G + N V+ V +++ + + + NGVRIKT + +Y+
Sbjct: 196 GHGLSIGSVGGRDDN-TVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSGI 254
Query: 297 ---PIVIDQYYCPHKHCKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMK 353
IVI+Q Y + + I+DVT + + GT + + C +
Sbjct: 255 TDYGIVIEQDYENGSPTGTPSTGIPITDVTVDGVTGTLEDDATQVYILCGDGSCSDWTWS 314
Query: 354 DIHLGHVKPEKKTSSYCSNV 373
+ L KTS C NV
Sbjct: 315 GVDL----SGGKTSDKCENV 330
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 32/259 (12%)
Query: 141 SINGQGSNWWKLSCKHD---KIGLVVANS-NNVHIDDLTFEDSPQMHIAFERSTNIEATN 196
SI+ QGS WW + K A+S + +I L ++P + +T + +
Sbjct: 79 SIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYD 138
Query: 197 LTI-MAPGNSP---NTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG 252
+ I + G+S NTD + S+ V I+ + + DDC++I G+ ++ T C G
Sbjct: 139 VIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGT-NITFTGGTCSGG 197
Query: 253 HGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGSYNP--------------- 297
HG+SIGS+G + N V+ V ++N + NGVRIKT G+
Sbjct: 198 HGLSIGSVGGRSDNT-VKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIA 256
Query: 298 ---IVIDQYYCPHKHCKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKD 354
IVI+Q Y T V I+ +T + I G+ + S C N
Sbjct: 257 KYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSG 316
Query: 355 IHLGHVKPEKKTSSYCSNV 373
+ + K S+ CSN+
Sbjct: 317 VSV----TGGKKSTKCSNI 331
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 150/340 (44%), Gaps = 42/340 (12%)
Query: 37 DVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNS 96
++L+YGA D TD A AW A CKS +++P +T +G ++
Sbjct: 22 NILSYGAVADNSTDVGPAITSAWAA-CKSGG---LVYIPSGNYALNTWVTLTG----GSA 73
Query: 97 ITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSI-NGQGSNWWKLSCK 155
Q+DG ++ + N + + F ++G G + + +G+ ++
Sbjct: 74 TAIQLDG-IIYRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYGARI--- 129
Query: 156 HDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQH 215
L + + + + D+ D+P H + ++ E N+ I GN DGI +
Sbjct: 130 -----LRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRG-GNEGGLDGIDVW- 182
Query: 216 SSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVN 275
SN+ + ++ D+CV++ ++++ + +I+C G ++GSLG + + V+ N
Sbjct: 183 GSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD--TDVTDIVYRN 240
Query: 276 NVSFTETQ------NG-------VRIKTWQGSYNP--IVIDQYYCPHKHCKNKTLAVKIS 320
+++ Q NG V ++ + G N + ID Y+ V+++
Sbjct: 241 VYTWSSNQMYMIKSNGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGD--GVQLN 298
Query: 321 DVTYNHILGT-SNGET--AVAFSCSTSTPCKNIIMKDIHL 357
++T + GT +NG T + CS + PC ++ ++DI +
Sbjct: 299 NITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAI 338
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 118/266 (44%), Gaps = 48/266 (18%)
Query: 141 SINGQGSNWWKLSCKHD---KIGLVVANS-NNVHIDDLTFEDSPQMHIAFERSTNIEATN 196
SING GS WW + K A+S N I L +SP + S + +
Sbjct: 83 SINGDGSRWWDGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKD 142
Query: 197 LTI-MAPGNSP---NTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG 252
+TI + G+ NTD I S+ V+I+ + + DDCV++ G ++ + +C G
Sbjct: 143 ITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-ENIYFSGGYCSGG 201
Query: 253 HGISIGSLGMKGRNEKVEFVHVNNVSFTE-----TQNGVRIKT---WQGSYNP------- 297
HG+SIGS+G + N V NV+F + + NGVRIKT GS +
Sbjct: 202 HGLSIGSVGGRSDNT------VKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDIT 255
Query: 298 --------IVIDQYYCPHKHCKNKTLAVKISDVTYNHILGT--SNGETAVAFSCSTSTPC 347
IV+ Q Y T V I+D +++ G+ S+G T + SC S C
Sbjct: 256 LTSIAKYGIVVQQNY--GDTSSTPTTGVPITDFVLDNVHGSVVSSG-TNILISCG-SGSC 311
Query: 348 KNIIMKDIHLGHVKPEKKTSSYCSNV 373
+ D+ + KTSS C+NV
Sbjct: 312 SDWTWTDVSV----SGGKTSSKCTNV 333
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 136/330 (41%), Gaps = 56/330 (16%)
Query: 72 MHVPHDKSFKLQPLTFSGEICKSNSITFQID---GHLVAPRDPHAWNTCDGSKCRQWIQF 128
+ VP + L LT ++ + TFQ + G L++ H T G+
Sbjct: 53 IEVPAGTTLDLTGLTSGTKVIFEGTTTFQYEEWAGPLISMSGEHI--TVTGASGHL---- 106
Query: 129 KKFGGLFIRGVGSINGQGSNWW--KLSCKHDKIGLVVANS-NNVHIDDLTFEDSPQMHIA 185
IN G+ WW K + K A+ ++ I L +++P M +
Sbjct: 107 -------------INCDGARWWDGKGTSGKKKPKFFYAHGLDSSSITGLNIKNTPLMAFS 153
Query: 186 FERSTNIEATNLTIM-APGNSP---NTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSH 241
+ + +I T++TI A G++ NTD + +S V+I + DDC+++ G +
Sbjct: 154 VQ-ANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSG-EN 211
Query: 242 LNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGSYNP---- 297
+ T C GHG+SIGS+G + N V+ V + + + + ++N VRIKT G+
Sbjct: 212 IWFTGGTCIGGHGLSIGSVGDR-SNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEI 270
Query: 298 --------------IVIDQYYCPHKHCKNKTLAVKISDVTYNHILGT-SNGETAVAFSCS 342
+VI Q Y K T V I DV + G+ +G T + C
Sbjct: 271 TYSNIVMSGISDYGVVIQQDYEDGKPTGKPTNGVTIQDVKLESVTGSVDSGATEIYLLCG 330
Query: 343 TSTPCKNIIMKDIHLGHVKPEKKTSSYCSN 372
S C + D+ + K S+ C N
Sbjct: 331 -SGSCSDWTWDDVKV----TGGKKSTACKN 355
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 39/226 (17%)
Query: 142 INGQGSNWW-------KLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEA 194
I+G G +W + K D +V + N I +L ++ P S+ +
Sbjct: 81 IDGNGQAYWDGKGSNSNSNQKPDHFIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQLTI 140
Query: 195 TNLTI-MAPGNSPN-----------TDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHL 242
+ L + G+ PN TDG I S +V++ ++ + DDCV++ G+ ++
Sbjct: 141 SGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSGT-NI 199
Query: 243 NITNIFCGPGHGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQG--------S 294
++N++C GHG+SIGS+G K N V+ V + +QNG RIK+ G +
Sbjct: 200 VVSNMYCSGGHGLSIGSVGGKSDNV-VDGVQFLSSQVVNSQNGCRIKSNSGATGTINNVT 258
Query: 295 YNPIV----------IDQYYCPHKHCKNKTLAVKISDVTYNHILGT 330
Y I + Q Y T VKIS++ + + GT
Sbjct: 259 YQNIALTNISTYGVDVQQDYLNGGPTGKPTNGVKISNIKFIKVTGT 304
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 207 NTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRN 266
NTDG + ++NV+I + I+ DDC++I DG +++ N C GHGISIGS+
Sbjct: 151 NTDGFDVS-ANNVTIQNCIVKNQDDCIAINDG-NNIRFENNQCSGGHGISIGSIAT---G 205
Query: 267 EKVEFVHVNNVSFTETQNGVRIKTWQ 292
+ V V + + T + GVRIK +
Sbjct: 206 KHVSNVVIKGNTVTRSMYGVRIKAQR 231
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 91/252 (36%), Gaps = 62/252 (24%)
Query: 37 DVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNS 96
++L++GA GDG TD +++FK A + K + VP + + +G I ++
Sbjct: 29 NLLDFGARGDGRTDCSESFKRAIEELSKQGGGR--LIVP-------EGVFLTGPIHLKSN 79
Query: 97 ITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLF---------IRGVGSINGQGS 147
I + G + DP + ++ + I+ + L I G G ++G
Sbjct: 80 IELHVKGTIKFIPDPERYLPVVLTRF-EGIELYNYSPLVYALDCENVAITGSGVLDGSAD 138
Query: 148 N--WWKLSCKHD---KIGLVVANSN----------------------------------- 167
N WW K D K GL +
Sbjct: 139 NEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRC 198
Query: 168 -NVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSII 226
NV ++ + +SP I S N+ N+ I + G PN DGI + + I
Sbjct: 199 RNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTG--PNNDGIDPESCKYMLIEKCRF 256
Query: 227 STGDDCVSIGDG 238
TGDD V I G
Sbjct: 257 DTGDDSVVIKSG 268
>pdb|3EQN|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQN|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQO|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
pdb|3EQO|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
Length = 758
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 37 DVLNYGAAGDGHTDDTQAFKDAWKA------TCKSSSSSPTMHVPHDKSFKL 82
+V NYGA GDG+TDDT A + A A C S+++ P + ++K+
Sbjct: 51 NVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKV 102
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 34 DAFDVLNYGAAGDGHTDDTQAFKDAWK--ATCK 64
D V + GA GDGHTDDTQA K+ + A CK
Sbjct: 399 DFVSVRSQGAKGDGHTDDTQAIKNVFAKYAGCK 431
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 207 NTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSH 241
N DGI +S NV + ++ TGDDC++ G+
Sbjct: 379 NGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGE 413
>pdb|1S4D|A Chain A, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|B Chain B, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|D Chain D, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|E Chain E, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|F Chain F, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|G Chain G, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|H Chain H, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|I Chain I, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|J Chain J, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|K Chain K, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|L Chain L, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|M Chain M, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
Length = 280
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 291 WQG--SYNPIVIDQYYCPHKHCKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCK 348
WQG S +P+++ Y KH I +T N I G + + VAF C+ +TP +
Sbjct: 170 WQGIASGSPVIV--MYMAMKH---------IGAITANLIAGGRSPDEPVAFVCNAATPQQ 218
Query: 349 NII 351
++
Sbjct: 219 AVL 221
>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment
pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With
2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In An Apo Form
pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With Cobalt
Ions
Length = 609
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 38 VLNYGAAGDGHTDDTQAFKDAWKA 61
V YGA GDG TDD +AF+ A ++
Sbjct: 25 VKTYGAKGDGVTDDIRAFEKAIES 48
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 38 VLNYGAAGDGHTDDTQAFKDAWKA 61
V YGA GDG TDD +AF+ A ++
Sbjct: 25 VKTYGAKGDGVTDDIRAFEKAIES 48
>pdb|1F1A|A Chain A, Crystal Structure Of Yeast H48q Cuznsod Fals Mutant Analog
Length = 154
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 184 IAFERSTNIEATNLTIMAPGNSPNTD-GIHIQH 215
+ FE+++ E T ++ GNSPN + G HIQ
Sbjct: 18 VKFEQASESEPTTVSYEIAGNSPNAERGFHIQE 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,983,273
Number of Sequences: 62578
Number of extensions: 565320
Number of successful extensions: 1163
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1129
Number of HSP's gapped (non-prelim): 25
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)