Query 041470
Match_columns 394
No_of_seqs 226 out of 1680
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 1.9E-77 4.2E-82 595.7 44.5 351 33-391 50-426 (443)
2 PLN02155 polygalacturonase 100.0 5.3E-76 1.1E-80 576.7 42.1 346 32-389 24-393 (394)
3 PLN03003 Probable polygalactur 100.0 4.4E-76 9.6E-81 581.4 39.7 351 33-392 21-393 (456)
4 PLN02218 polygalacturonase ADP 100.0 1.7E-75 3.8E-80 579.1 43.5 342 31-388 63-431 (431)
5 PLN03010 polygalacturonase 100.0 1.7E-74 3.7E-79 567.1 44.4 344 32-390 43-405 (409)
6 PLN02188 polygalacturonase/gly 100.0 6.5E-75 1.4E-79 571.4 40.8 347 30-388 31-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 4.6E-55 1E-59 424.0 29.3 296 68-376 5-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 6.2E-42 1.3E-46 342.9 26.2 250 30-293 77-380 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 3.6E-24 7.7E-29 208.7 23.2 229 30-291 32-316 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 9.3E-21 2E-25 174.0 19.8 214 35-287 1-225 (225)
11 PLN02793 Probable polygalactur 99.8 4.7E-17 1E-21 162.9 27.3 218 95-333 143-398 (443)
12 PLN02188 polygalacturonase/gly 99.8 7E-17 1.5E-21 159.9 26.8 219 95-332 122-377 (404)
13 PF03718 Glyco_hydro_49: Glyco 99.8 1E-16 2.2E-21 158.0 25.1 256 69-359 232-514 (582)
14 PLN03003 Probable polygalactur 99.8 1.4E-16 3.1E-21 158.5 26.3 215 95-332 113-360 (456)
15 PLN02218 polygalacturonase ADP 99.8 1E-16 2.2E-21 159.8 24.3 216 95-331 156-410 (431)
16 PLN02155 polygalacturonase 99.8 2.1E-16 4.6E-21 155.8 25.4 217 96-333 116-367 (394)
17 PF00295 Glyco_hydro_28: Glyco 99.7 1.8E-16 3.8E-21 154.2 21.5 216 95-331 60-310 (326)
18 PLN03010 polygalacturonase 99.7 1.6E-15 3.4E-20 150.1 27.3 209 95-333 139-378 (409)
19 TIGR03805 beta_helix_1 paralle 99.6 3.5E-14 7.7E-19 137.0 19.3 177 55-292 1-183 (314)
20 COG5434 PGU1 Endopygalactoruna 99.3 1.6E-11 3.4E-16 124.4 15.2 152 124-289 239-405 (542)
21 COG3866 PelB Pectate lyase [Ca 98.7 1.8E-07 3.9E-12 86.9 12.5 141 96-283 76-230 (345)
22 TIGR03805 beta_helix_1 paralle 98.6 2.9E-06 6.2E-11 82.2 18.2 135 130-282 61-203 (314)
23 PF12541 DUF3737: Protein of u 98.5 1.8E-06 3.9E-11 79.1 13.1 80 186-288 152-231 (277)
24 PF05048 NosD: Periplasmic cop 98.4 1E-05 2.3E-10 75.0 16.0 134 126-288 16-151 (236)
25 PRK10123 wcaM putative colanic 98.4 1.1E-05 2.4E-10 74.6 15.6 206 32-288 31-264 (464)
26 smart00656 Amb_all Amb_all dom 98.4 6.3E-06 1.4E-10 74.0 13.7 98 184-282 34-144 (190)
27 PF12541 DUF3737: Protein of u 98.4 1.3E-05 2.9E-10 73.5 15.6 91 165-281 77-167 (277)
28 PF13229 Beta_helix: Right han 98.4 2.5E-06 5.4E-11 73.1 10.3 116 161-290 3-121 (158)
29 PF03718 Glyco_hydro_49: Glyco 98.4 0.00011 2.3E-09 74.0 22.0 197 68-289 255-497 (582)
30 PF13229 Beta_helix: Right han 98.4 9.5E-06 2.1E-10 69.5 13.2 138 127-289 4-145 (158)
31 TIGR03808 RR_plus_rpt_1 twin-a 98.3 1.1E-05 2.3E-10 80.0 14.3 126 160-291 108-270 (455)
32 PF00544 Pec_lyase_C: Pectate 98.2 1.3E-05 2.9E-10 72.5 11.5 76 206-282 73-158 (200)
33 PF07602 DUF1565: Protein of u 98.2 0.0001 2.2E-09 68.4 16.7 169 52-289 15-195 (246)
34 PF14592 Chondroitinas_B: Chon 98.2 0.00026 5.6E-09 70.2 20.1 26 51-81 3-28 (425)
35 PF05048 NosD: Periplasmic cop 98.0 0.00013 2.9E-09 67.6 13.7 116 160-291 15-131 (236)
36 PLN02176 putative pectinestera 98.0 0.0018 3.9E-08 62.9 21.6 177 50-282 49-246 (340)
37 PLN02480 Probable pectinestera 97.9 0.0015 3.2E-08 63.7 19.4 107 163-282 128-252 (343)
38 PLN02682 pectinesterase family 97.8 0.0025 5.4E-08 62.5 18.8 187 50-282 80-280 (369)
39 smart00656 Amb_all Amb_all dom 97.8 0.0016 3.5E-08 58.5 15.8 119 160-288 33-173 (190)
40 PLN02665 pectinesterase family 97.8 0.0052 1.1E-07 60.4 20.5 116 161-288 148-278 (366)
41 PLN02773 pectinesterase 97.7 0.0042 9.1E-08 59.9 19.0 110 162-283 97-213 (317)
42 PRK10531 acyl-CoA thioesterase 97.7 0.0067 1.4E-07 60.4 19.9 206 44-282 87-336 (422)
43 PLN02497 probable pectinestera 97.7 0.016 3.5E-07 56.2 21.9 107 164-282 112-239 (331)
44 PLN02634 probable pectinestera 97.6 0.016 3.5E-07 56.6 20.7 187 50-282 66-266 (359)
45 COG3420 NosD Nitrous oxidase a 97.5 0.041 9E-07 52.6 21.5 120 123-250 69-191 (408)
46 PLN02484 probable pectinestera 97.5 0.01 2.2E-07 62.0 19.0 181 51-283 283-476 (587)
47 PF00544 Pec_lyase_C: Pectate 97.5 0.0035 7.5E-08 56.8 13.7 116 164-289 43-188 (200)
48 PLN02197 pectinesterase 97.5 0.01 2.3E-07 61.8 18.8 186 50-283 285-481 (588)
49 PLN02304 probable pectinestera 97.4 0.03 6.5E-07 55.2 20.4 181 50-282 85-287 (379)
50 PLN02708 Probable pectinestera 97.4 0.021 4.5E-07 59.4 20.2 183 50-283 251-450 (553)
51 PF12218 End_N_terminal: N ter 97.4 0.00019 4.2E-09 50.6 3.6 38 43-85 1-38 (67)
52 PF01095 Pectinesterase: Pecti 97.4 0.0056 1.2E-07 58.8 14.9 180 50-282 10-202 (298)
53 PLN02506 putative pectinestera 97.4 0.014 3.1E-07 60.2 18.3 180 51-282 243-434 (537)
54 PLN02201 probable pectinestera 97.4 0.024 5.1E-07 58.3 19.7 180 50-282 216-408 (520)
55 PLN02933 Probable pectinestera 97.3 0.027 5.8E-07 58.0 19.9 180 50-282 228-420 (530)
56 PLN02745 Putative pectinestera 97.3 0.024 5.1E-07 59.4 19.6 181 50-283 295-488 (596)
57 PLN02170 probable pectinestera 97.3 0.027 5.8E-07 57.8 19.4 182 50-283 235-428 (529)
58 PF12708 Pectate_lyase_3: Pect 97.3 0.011 2.4E-07 53.6 15.1 104 170-290 95-206 (225)
59 PLN02432 putative pectinestera 97.3 0.051 1.1E-06 51.9 19.7 108 163-282 90-205 (293)
60 PLN02301 pectinesterase/pectin 97.3 0.025 5.4E-07 58.6 18.8 181 50-283 246-439 (548)
61 PLN02488 probable pectinestera 97.2 0.052 1.1E-06 55.3 20.5 182 50-283 207-400 (509)
62 PLN02916 pectinesterase family 97.2 0.034 7.3E-07 56.8 19.2 110 162-283 272-393 (502)
63 PLN02671 pectinesterase 97.2 0.098 2.1E-06 51.3 21.7 189 50-282 69-270 (359)
64 PLN02416 probable pectinestera 97.2 0.024 5.1E-07 58.8 18.3 183 50-283 240-433 (541)
65 PLN02995 Probable pectinestera 97.2 0.024 5.1E-07 58.8 18.3 183 50-283 233-428 (539)
66 COG3866 PelB Pectate lyase [Ca 97.2 0.0099 2.2E-07 55.9 13.9 79 181-259 144-240 (345)
67 PLN02217 probable pectinestera 97.2 0.023 5.1E-07 59.9 18.2 110 164-283 334-453 (670)
68 PLN02313 Pectinesterase/pectin 97.2 0.026 5.7E-07 59.1 18.4 183 50-283 285-478 (587)
69 PLN02713 Probable pectinestera 97.2 0.027 5.9E-07 58.6 18.3 109 163-283 336-456 (566)
70 PLN02468 putative pectinestera 97.1 0.034 7.3E-07 58.0 18.3 180 51-283 269-461 (565)
71 PLN02314 pectinesterase 97.1 0.036 7.7E-07 58.1 18.4 182 51-283 289-481 (586)
72 PLN02990 Probable pectinestera 97.1 0.069 1.5E-06 55.8 20.0 185 50-283 269-463 (572)
73 PLN03043 Probable pectinestera 97.0 0.077 1.7E-06 55.1 19.4 180 50-282 233-428 (538)
74 PF01696 Adeno_E1B_55K: Adenov 96.7 0.21 4.6E-06 49.2 18.6 153 37-252 45-200 (386)
75 COG4677 PemB Pectin methyleste 95.1 1.2 2.7E-05 42.6 15.3 30 50-81 92-123 (405)
76 TIGR03804 para_beta_helix para 92.8 0.15 3.4E-06 33.8 3.5 28 210-237 1-28 (44)
77 TIGR03804 para_beta_helix para 92.1 0.27 5.8E-06 32.6 4.0 41 183-228 1-41 (44)
78 PLN02773 pectinesterase 92.0 7.7 0.00017 37.6 15.3 87 186-284 98-185 (317)
79 COG3420 NosD Nitrous oxidase a 90.9 4.1 8.8E-05 39.4 11.7 13 126-138 123-135 (408)
80 PRK10123 wcaM putative colanic 89.2 3 6.5E-05 39.4 9.2 113 160-281 261-394 (464)
81 PF01696 Adeno_E1B_55K: Adenov 87.7 19 0.00041 35.8 14.1 87 186-286 117-204 (386)
82 PLN02480 Probable pectinestera 86.2 8.9 0.00019 37.6 11.1 83 188-282 130-218 (343)
83 PF08480 Disaggr_assoc: Disagg 84.6 27 0.00059 31.0 12.0 99 167-283 2-110 (198)
84 PLN02698 Probable pectinestera 83.2 20 0.00044 37.1 12.6 108 164-283 267-386 (497)
85 PLN02708 Probable pectinestera 82.8 11 0.00023 39.6 10.5 83 187-281 327-410 (553)
86 PF01095 Pectinesterase: Pecti 82.5 7.7 0.00017 37.3 8.8 82 187-281 84-167 (298)
87 PF03211 Pectate_lyase: Pectat 82.0 41 0.00088 30.7 15.5 76 167-248 61-137 (215)
88 PF09251 PhageP22-tail: Salmon 81.7 8.2 0.00018 38.5 8.5 45 240-291 311-355 (549)
89 PLN02713 Probable pectinestera 80.0 15 0.00032 38.6 10.4 82 188-281 338-420 (566)
90 PLN02506 putative pectinestera 80.0 13 0.00028 38.8 9.9 84 186-281 315-399 (537)
91 PF07602 DUF1565: Protein of u 79.6 10 0.00022 35.4 8.2 80 184-291 91-172 (246)
92 PF03211 Pectate_lyase: Pectat 79.1 15 0.00032 33.6 8.8 77 190-281 61-140 (215)
93 PLN02170 probable pectinestera 78.2 20 0.00043 37.3 10.5 84 186-281 309-393 (529)
94 PLN02916 pectinesterase family 77.7 22 0.00047 36.8 10.5 83 187-281 274-357 (502)
95 PLN02301 pectinesterase/pectin 77.6 17 0.00038 38.0 10.0 83 187-281 320-403 (548)
96 PLN02468 putative pectinestera 77.6 18 0.00038 38.1 10.1 83 187-281 342-425 (565)
97 PLN02416 probable pectinestera 77.5 15 0.00033 38.4 9.5 83 187-281 314-397 (541)
98 PLN02201 probable pectinestera 77.4 25 0.00053 36.6 11.0 83 187-281 290-373 (520)
99 PLN02682 pectinesterase family 77.2 27 0.00059 34.6 10.8 84 186-281 159-248 (369)
100 PLN03043 Probable pectinestera 77.0 21 0.00046 37.3 10.5 84 186-281 309-393 (538)
101 PLN02665 pectinesterase family 76.7 83 0.0018 31.2 14.4 86 186-283 150-241 (366)
102 PLN02745 Putative pectinestera 76.5 21 0.00046 37.7 10.4 83 187-281 369-452 (596)
103 PLN02488 probable pectinestera 76.5 24 0.00052 36.4 10.4 83 187-281 281-364 (509)
104 PLN02197 pectinesterase 75.7 22 0.00047 37.6 10.2 83 187-281 361-444 (588)
105 PLN02217 probable pectinestera 74.9 17 0.00037 38.9 9.2 82 188-281 335-417 (670)
106 PLN02432 putative pectinestera 74.8 31 0.00066 33.1 10.1 81 188-281 92-173 (293)
107 PLN02176 putative pectinestera 74.7 26 0.00056 34.4 9.8 82 188-281 120-208 (340)
108 PF14592 Chondroitinas_B: Chon 74.6 15 0.00033 36.9 8.3 99 184-290 218-330 (425)
109 PLN02698 Probable pectinestera 74.4 20 0.00044 37.0 9.5 83 187-281 267-350 (497)
110 PLN02933 Probable pectinestera 74.1 27 0.00059 36.4 10.2 83 187-281 302-385 (530)
111 PLN02304 probable pectinestera 74.0 43 0.00094 33.3 11.2 84 187-282 159-248 (379)
112 PLN02634 probable pectinestera 73.9 64 0.0014 31.9 12.3 83 188-282 147-235 (359)
113 PF08480 Disaggr_assoc: Disagg 73.6 33 0.00072 30.4 9.1 47 239-289 33-84 (198)
114 PLN02314 pectinesterase 73.3 25 0.00053 37.2 9.9 83 187-281 362-445 (586)
115 PLN02484 probable pectinestera 73.3 22 0.00049 37.5 9.6 83 187-281 357-440 (587)
116 PLN02990 Probable pectinestera 73.2 26 0.00056 37.0 10.0 82 188-281 345-427 (572)
117 PRK10531 acyl-CoA thioesterase 72.7 40 0.00086 34.1 10.7 88 185-282 201-303 (422)
118 PLN02313 Pectinesterase/pectin 72.1 23 0.0005 37.5 9.4 83 187-281 359-442 (587)
119 PLN02995 Probable pectinestera 71.3 27 0.0006 36.5 9.6 82 188-281 310-392 (539)
120 PLN02671 pectinesterase 69.7 43 0.00092 33.1 10.0 84 187-282 151-239 (359)
121 PLN02497 probable pectinestera 68.6 40 0.00086 33.0 9.5 83 187-281 112-202 (331)
122 smart00710 PbH1 Parallel beta- 59.7 8.8 0.00019 21.2 2.1 20 271-290 3-23 (26)
123 PF10880 DUF2673: Protein of u 53.7 13 0.00028 25.9 2.3 19 1-19 1-20 (65)
124 TIGR03524 GldJ gliding motilit 52.5 22 0.00049 36.9 4.8 70 1-84 3-73 (559)
125 smart00722 CASH Domain present 50.9 1.3E+02 0.0029 24.3 10.2 68 164-234 73-144 (146)
126 COG3054 Predicted transcriptio 47.8 13 0.00029 31.8 2.0 38 1-42 1-38 (184)
127 PF15284 PAGK: Phage-encoded v 43.0 10 0.00023 27.0 0.6 16 1-16 1-16 (61)
128 smart00722 CASH Domain present 40.0 1.8E+02 0.0039 23.4 8.0 36 190-226 76-111 (146)
129 COG4677 PemB Pectin methyleste 38.4 1.2E+02 0.0026 29.6 6.9 17 243-259 257-273 (405)
130 PF11948 DUF3465: Protein of u 36.3 57 0.0012 27.3 4.0 11 51-61 22-32 (131)
131 COG5567 Predicted small peripl 36.0 41 0.00089 23.5 2.6 19 1-19 1-19 (58)
132 TIGR03119 one_C_fhcD formylmet 32.7 53 0.0011 31.0 3.6 39 44-86 239-281 (287)
133 TIGR02001 gcw_chp conserved hy 31.6 21 0.00046 33.2 0.9 23 39-61 42-64 (243)
134 cd08666 APC10-HECTD3 APC10-lik 30.5 73 0.0016 26.8 3.8 39 141-179 24-62 (134)
135 TIGR01655 yxeA_fam conserved h 29.4 59 0.0013 26.4 3.1 45 1-46 1-45 (114)
136 cd08665 APC10-CUL7 APC10-like 29.0 84 0.0018 26.3 3.9 37 141-177 19-55 (131)
137 PF13721 SecD-TM1: SecD export 28.7 1.3E+02 0.0027 23.9 4.8 13 49-61 45-57 (101)
138 PRK09752 adhesin; Provisional 28.6 9.8E+02 0.021 27.8 15.6 11 271-281 223-233 (1250)
139 cd08667 APC10-ZZEF1 APC10/DOC1 28.6 86 0.0019 26.3 3.9 37 141-177 19-55 (131)
140 CHL00132 psaF photosystem I su 28.5 58 0.0013 28.6 2.9 19 1-19 1-19 (185)
141 COG4588 AcfC Accessory coloniz 27.5 1.5E+02 0.0033 26.9 5.4 55 1-77 1-55 (252)
142 TIGR02052 MerP mercuric transp 26.5 39 0.00084 24.8 1.4 16 1-16 1-16 (92)
143 PF02741 FTR_C: FTR, proximal 25.9 56 0.0012 27.8 2.3 33 50-86 110-144 (150)
144 PF05984 Cytomega_UL20A: Cytom 24.8 95 0.0021 23.7 3.1 16 1-16 1-16 (100)
145 PRK02114 formylmethanofuran--t 24.6 90 0.0019 29.7 3.6 38 45-86 248-289 (297)
146 PF02402 Lysis_col: Lysis prot 24.3 30 0.00065 23.0 0.4 20 1-21 1-20 (46)
147 TIGR03656 IsdC heme uptake pro 22.0 2.4E+02 0.0053 25.7 5.8 25 49-80 45-69 (217)
148 PRK10081 entericidin B membran 21.9 52 0.0011 22.4 1.1 12 1-12 2-13 (48)
149 PF10162 G8: G8 domain; Inter 21.6 2.9E+02 0.0064 22.6 5.9 36 68-110 11-46 (125)
150 cd08365 APC10-like1 APC10-like 20.5 1.5E+02 0.0032 24.9 3.8 38 140-177 19-56 (131)
151 PF11429 Colicin_D: Colicin D; 20.2 88 0.0019 24.5 2.3 39 39-83 10-49 (92)
152 TIGR00247 conserved hypothetic 20.0 1.9E+02 0.0041 28.4 5.1 11 73-84 81-91 (342)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.9e-77 Score=595.71 Aligned_cols=351 Identities=42% Similarity=0.821 Sum_probs=320.9
Q ss_pred CceEEeeecCcCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCC
Q 041470 33 GDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPH 112 (394)
Q Consensus 33 ~~~~nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~ 112 (394)
+++|||+||||+|||++|||+|||+||++||+.. ||++|+||+|++|++++|.|.++ ||| +++|+++|+|+++.++.
T Consensus 50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~-ggg~v~vP~G~~fl~~~i~l~gp-cks-~vtL~l~g~l~~~~d~~ 126 (443)
T PLN02793 50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSK-VKTRIVIPAGYTFLVRPIDLGGP-CKA-KLTLQISGTIIAPKDPD 126 (443)
T ss_pred ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccC-CCCEEEECCCceEEEEEEEECCc-cCC-CeEEEEEEEEEccCChH
Confidence 4789999999999999999999999999889876 88999999996699999999887 889 99999999999999999
Q ss_pred CCcCCCCCCccccEEEeeeeceEEEeceEEeCCCccccccCC--------CCCceeEEEecccceEEeeeeEeCCCCcee
Q 041470 113 AWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSC--------KHDKIGLVVANSNNVHIDDLTFEDSPQMHI 184 (394)
Q Consensus 113 ~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~--------~~~p~~i~~~~~~nv~I~~vti~ns~~~~i 184 (394)
+|+ +...++||++.+.+|++|+|.|+|||+|+.||...+ ..||+++.|.+|+|++|++++++|+|+|++
T Consensus 127 ~w~---~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i 203 (443)
T PLN02793 127 VWK---GLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHI 203 (443)
T ss_pred Hcc---CCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEE
Confidence 997 344568999999999999999999999999996422 237999999999999999999999999999
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcC
Q 041470 185 AFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKG 264 (394)
Q Consensus 185 ~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~ 264 (394)
++..|++|+|++++|.++..++|+||||+.+|+||+|+||+|+++||||++|++++||+|+||+|.++|||+|||+|++.
T Consensus 204 ~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~ 283 (443)
T PLN02793 204 AFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSN 283 (443)
T ss_pred EEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCEEEEEEEeEEEeCCceeEEEEEecCC-----------------cccEEEEeEecCCC-CCCCCCcceeEEeEEEEE
Q 041470 265 RNEKVEFVHVNNVSFTETQNGVRIKTWQGS-----------------YNPIVIDQYYCPHK-HCKNKTLAVKISDVTYNH 326 (394)
Q Consensus 265 ~~~~v~nI~i~n~~~~~~~~gi~ik~~~g~-----------------~~~i~i~~~y~~~~-~~~~~~~~~~i~nI~~~n 326 (394)
+.+.|+||+|+||+|.++.+|+|||+|+|+ .+||.|++.|++.. .|....+.+.|+||+|+|
T Consensus 284 ~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~n 363 (443)
T PLN02793 284 SWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVH 363 (443)
T ss_pred CCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEE
Confidence 678899999999999999999999999764 68999999997643 355556789999999999
Q ss_pred EEEEecCCceEEEEecCCCCeecEEEEeEEEEeecCCCCcceeeeccccCCCCCcccCCCcCCcC
Q 041470 327 ILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVRGTADPGVFPKVSCLQVD 391 (394)
Q Consensus 327 I~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~C~~~~~~~~~~~~~~~~c~~~~ 391 (394)
|+++.....++.|.|+++.||+||+|+||+++... |+...+.|.|++|...+ .++|++|++..
T Consensus 364 I~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~-g~~~~~~C~n~~g~~~~-~~~p~~C~~~~ 426 (443)
T PLN02793 364 IKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSST-GDFTESFCWEAYGSSSG-QVYPPPCFSDS 426 (443)
T ss_pred EEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecC-CCCCCcEEEccEEeECC-eEcCCccccCC
Confidence 99998655689999999999999999999999886 56667999999999988 78888999653
No 2
>PLN02155 polygalacturonase
Probab=100.00 E-value=5.3e-76 Score=576.69 Aligned_cols=346 Identities=41% Similarity=0.743 Sum_probs=314.7
Q ss_pred CCceEEeeecCcCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCC
Q 041470 32 IGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDP 111 (394)
Q Consensus 32 ~~~~~nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~ 111 (394)
.+++|||+||||+|||+||||+|||+||++||+.. ||++|+||+| +|++++|.|.++ ||| +++|+++|+|+++.++
T Consensus 24 ~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~-gGg~v~vP~G-~yl~g~i~l~gp-cks-nv~l~l~G~l~~~~d~ 99 (394)
T PLN02155 24 ASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSA-SSATVVVPTG-TFLLKVITFGGP-CKS-KITFQVAGTVVAPEDY 99 (394)
T ss_pred CCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccC-CCeEEEECCC-cEEEEEEEEccc-CCC-CceEEEeeEEECcccc
Confidence 34789999999999999999999999997689876 8999999999 899999999998 999 9999999999998877
Q ss_pred CCCcCCCCCCccccEEEeeeeceEEEeceEEeCCCccccccCC-----CCCceeEEEecccceEEeeeeEeCCCCceeEE
Q 041470 112 HAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSC-----KHDKIGLVVANSNNVHIDDLTFEDSPQMHIAF 186 (394)
Q Consensus 112 ~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~-----~~~p~~i~~~~~~nv~I~~vti~ns~~~~i~~ 186 (394)
..|. ....|+.+.+.+|+.|+| |+|||+|+.||.... ..+|++++|.+|+|++|++++++|||+|++++
T Consensus 100 ~~~~-----~~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~ 173 (394)
T PLN02155 100 RTFG-----NSGYWILFNKVNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTL 173 (394)
T ss_pred cccc-----ccceeEEEECcCCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEE
Confidence 6664 223589999999999999 999999999997422 23578999999999999999999999999999
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCCC
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRN 266 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~~ 266 (394)
..|++|+|++++|.++.+++|+||||+.+|+||+|+||+|++|||||++|++++||+|+||+|.++||++|||+|++.+.
T Consensus 174 ~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~ 253 (394)
T PLN02155 174 NGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNE 253 (394)
T ss_pred ECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCC
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999887657
Q ss_pred CCEEEEEEEeEEEeCCceeEEEEEecC---C---------------cccEEEEeEecCCCC-CCCCCcceeEEeEEEEEE
Q 041470 267 EKVEFVHVNNVSFTETQNGVRIKTWQG---S---------------YNPIVIDQYYCPHKH-CKNKTLAVKISDVTYNHI 327 (394)
Q Consensus 267 ~~v~nI~i~n~~~~~~~~gi~ik~~~g---~---------------~~~i~i~~~y~~~~~-~~~~~~~~~i~nI~~~nI 327 (394)
+.|+||+|+||+|.++.+|+|||||.+ | .+||.|++.|++... |+...+.+.|+||+|+||
T Consensus 254 ~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni 333 (394)
T PLN02155 254 DGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNI 333 (394)
T ss_pred CcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEee
Confidence 899999999999999999999999843 3 679999999986543 555566789999999999
Q ss_pred EEEecCCceEEEEecCCCCeecEEEEeEEEEeecCCCCcceeeeccccCCCCCcccCCCcCC
Q 041470 328 LGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVRGTADPGVFPKVSCLQ 389 (394)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~C~~~~~~~~~~~~~~~~c~~ 389 (394)
+++.....++.|.|+++.||+||+|+||+++... +++..+.|.|++|.+.+ +.+|++|++
T Consensus 334 ~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~-~~~~~~~C~n~~G~~~~-~~~p~~c~~ 393 (394)
T PLN02155 334 QGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNK-GTPATSFCFNAVGKSLG-VIQPTSCLN 393 (394)
T ss_pred EEEecCCceEEEEeCCCCCEEEEEEEeeEEEecC-CCccCcEEeccEeEEcc-cCCcccccC
Confidence 9998766689999999999999999999999986 66678999999999998 889999986
No 3
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=4.4e-76 Score=581.40 Aligned_cols=351 Identities=44% Similarity=0.799 Sum_probs=314.6
Q ss_pred CceEEeeecCcCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCC
Q 041470 33 GDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPH 112 (394)
Q Consensus 33 ~~~~nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~ 112 (394)
...|||+||||+|||++|||+|||+||++||++. ++++|+||+|++|++++|.|+++ |++..++++++|+|+++.. .
T Consensus 21 ~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~-ggg~v~VP~G~~yl~~pl~l~gp-ck~~~~~~~i~G~i~ap~~-~ 97 (456)
T PLN03003 21 SNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGT-GDGQFVVPAGMTFMLQPLKFQGS-CKSTPVFVQMLGKLVAPSK-G 97 (456)
T ss_pred eeEEehhhcCCCCCCCcccHHHHHHHHHHhhhcc-CCCEEEECCCceEEeeeeEeCCC-ccCcceeeccCceEecCcc-c
Confidence 3579999999999999999999999999889876 89999999997799999999987 7763488899999998653 4
Q ss_pred CCcCCCCCCccccEEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCceeEEeceecE
Q 041470 113 AWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNI 192 (394)
Q Consensus 113 ~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~~i~~~~~~nv 192 (394)
.|. + ...+||++.++++++|+|.|+|||+|+.||.. ...||++++|.+|+|++|+|++++|+|+|++++..|+++
T Consensus 98 ~w~---~-~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~-~~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV 172 (456)
T PLN03003 98 NWK---G-DKDQWILFTDIEGLVIEGDGEINGQGSSWWEH-KGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYV 172 (456)
T ss_pred ccc---C-CCcceEEEEcccceEEeccceEeCCchhhhhc-ccCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccE
Confidence 565 2 23579999999999999999999999999975 346799999999999999999999999999999999999
Q ss_pred EEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCCCCCEEEE
Q 041470 193 EATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFV 272 (394)
Q Consensus 193 ~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~~~~v~nI 272 (394)
+|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||++|++++||+|+||+|.++|||+|||+|+++..+.|+||
T Consensus 173 ~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV 252 (456)
T PLN03003 173 TISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENV 252 (456)
T ss_pred EEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceEEEE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999987767889999
Q ss_pred EEEeEEEeCCceeEEEEEecCC-----------------cccEEEEeEecCCCC---CCCCCcceeEEeEEEEEEEEEec
Q 041470 273 HVNNVSFTETQNGVRIKTWQGS-----------------YNPIVIDQYYCPHKH---CKNKTLAVKISDVTYNHILGTSN 332 (394)
Q Consensus 273 ~i~n~~~~~~~~gi~ik~~~g~-----------------~~~i~i~~~y~~~~~---~~~~~~~~~i~nI~~~nI~~~~~ 332 (394)
+|+||+|.++.+|+|||||+|+ .+||.|++.|++... |....+.+.|+||+|+||+++..
T Consensus 253 ~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~ 332 (456)
T PLN03003 253 CVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSK 332 (456)
T ss_pred EEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeC
Confidence 9999999999999999999764 689999999975432 33445679999999999999987
Q ss_pred CCceEEEEecCCCCeecEEEEeEEEEeec--CCCCcceeeeccccCCCCCcccCCCcCCcCC
Q 041470 333 GETAVAFSCSTSTPCKNIIMKDIHLGHVK--PEKKTSSYCSNVRGTADPGVFPKVSCLQVDE 392 (394)
Q Consensus 333 ~~~~~~i~~~~~~~~~ni~~~nv~i~~~~--~~~~~~~~C~~~~~~~~~~~~~~~~c~~~~~ 392 (394)
...++.|.|+++.||+||+|+||+++... .+++..++|.|++|.+.+ +.||++|++..+
T Consensus 333 ~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~-~~~~~~C~~~~~ 393 (456)
T PLN03003 333 SEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTI-AVPGLECLELST 393 (456)
T ss_pred ccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCc-eECCCCccccCC
Confidence 66789999999999999999999999863 123468999999999988 888889998654
No 4
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.7e-75 Score=579.12 Aligned_cols=342 Identities=38% Similarity=0.753 Sum_probs=312.0
Q ss_pred CCCceEEeeecCcCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCC
Q 041470 31 AIGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRD 110 (394)
Q Consensus 31 ~~~~~~nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~ 110 (394)
+++++|||+||||+|||++|||+|||+||++||+.. |+++|+||+|++|+++++.|+++ ||+ +++|+++|+|+++.+
T Consensus 63 ~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~-Ggg~v~vP~G~tyl~~~i~l~gp-~ks-~~~l~l~g~L~~s~d 139 (431)
T PLN02218 63 RTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSN-GAVNLLVPKGNTYLLKSIQLTGP-CKS-IRTVQIFGTLSASQK 139 (431)
T ss_pred CCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcC-CCcEEEECCCCeEEEeeeEecCc-cCC-ceEEEEEEEEEeCCC
Confidence 467899999999999999999999999998789876 78899999997799999999988 888 999999999999999
Q ss_pred CCCCcCCCCCCccccEEEeeeeceEEEec--eEEeCCCccccccCC--------CCCceeEEEecccceEEeeeeEeCCC
Q 041470 111 PHAWNTCDGSKCRQWIQFKKFGGLFIRGV--GSINGQGSNWWKLSC--------KHDKIGLVVANSNNVHIDDLTFEDSP 180 (394)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~~~~~nv~I~G~--G~idg~g~~~~~~~~--------~~~p~~i~~~~~~nv~I~~vti~ns~ 180 (394)
+.+|+ ....||.+.+.+||+|+|. |+|||+|+.||...+ ..||+++.|.+|+|++|++++++|+|
T Consensus 140 ~~~y~-----~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp 214 (431)
T PLN02218 140 RSDYK-----DISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQ 214 (431)
T ss_pred hhhcc-----ccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCC
Confidence 99986 2357899999999999996 999999999997532 34799999999999999999999999
Q ss_pred CceeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeec
Q 041470 181 QMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSL 260 (394)
Q Consensus 181 ~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~ 260 (394)
+|++++..|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.+|||||+||++++||+|+||+|.++|||+|||+
T Consensus 215 ~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~ 294 (431)
T PLN02218 215 QIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSL 294 (431)
T ss_pred CEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcC
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCEEEEEEEeEEEeCCceeEEEEEecCC-----------------cccEEEEeEecCCCCCCCCCcceeEEeEE
Q 041470 261 GMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGS-----------------YNPIVIDQYYCPHKHCKNKTLAVKISDVT 323 (394)
Q Consensus 261 g~~~~~~~v~nI~i~n~~~~~~~~gi~ik~~~g~-----------------~~~i~i~~~y~~~~~~~~~~~~~~i~nI~ 323 (394)
|++...+.|+||+|+||+|.++.+|+|||||+|+ .+||.|++.|++...|+...+.+.|+||+
T Consensus 295 g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~ 374 (431)
T PLN02218 295 GDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVV 374 (431)
T ss_pred CCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEE
Confidence 9765568999999999999999999999999764 68999999998765566666788999999
Q ss_pred EEEEEEEecCCceEEEEecCCCCeecEEEEeEEEEeecCCCCcceeeeccccCCCCCcccCCCcC
Q 041470 324 YNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVRGTADPGVFPKVSCL 388 (394)
Q Consensus 324 ~~nI~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~C~~~~~~~~~~~~~~~~c~ 388 (394)
|+||+++.....++.+.|+++.||+||+|+||+++.. ...|.|+++...+ +++| .|.
T Consensus 375 ~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~------~~~c~n~~~~~~~-~~~p-~c~ 431 (431)
T PLN02218 375 YRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG------KATCTNANVVDKG-AVSP-QCN 431 (431)
T ss_pred EEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC------eeeEEEeeEEEcc-cCCC-CCC
Confidence 9999999876568999999999999999999999842 4589999999999 4444 784
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=1.7e-74 Score=567.13 Aligned_cols=344 Identities=44% Similarity=0.811 Sum_probs=313.6
Q ss_pred CCceEEeeecCcCCCCCcchHHHHHHHHHHhhccCCC-CCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCC
Q 041470 32 IGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSS-SPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRD 110 (394)
Q Consensus 32 ~~~~~nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~g-g~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~ 110 (394)
.+.+|||+||||+|||++|||+|||+||++||... + +++|+||+|++|++++|.|+++ |++.+++|+++|+|+++.+
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~-g~~g~v~vP~G~~yl~~~i~l~~p-c~~~~v~l~l~G~l~~~~d 120 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGE-GNINTLLIPSGKTYLLQPIEFKGP-CKSTSIKVQLDGIIVAPSN 120 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCC-CCceEEEECCCCeEEEEeEEecCC-CCCCcEEEEEccEEEccCC
Confidence 44789999999999999999999999999778642 2 3799999997799999999986 6633799999999999999
Q ss_pred CCCCcCCCCCCccccEEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCceeEEecee
Q 041470 111 PHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERST 190 (394)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~~i~~~~~~ 190 (394)
+.+|+. .....|+.+.+++|++|+|.|+|||+|+.||. +++|.+|+|++|++++++|+|+|++++..|+
T Consensus 121 ~~~w~~---~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~--------~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~ 189 (409)
T PLN03010 121 IVAWSN---PKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE--------ALHISKCDNLTINGITSIDSPKNHISIKTCN 189 (409)
T ss_pred hhhccC---CCCcceEEEecccccEEeeceEEeCCCccccc--------eEEEEeecCeEEeeeEEEcCCceEEEEeccc
Confidence 999962 23457899999999999999999999999996 7999999999999999999999999999999
Q ss_pred cEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCCCCCEE
Q 041470 191 NIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVE 270 (394)
Q Consensus 191 nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~~~~v~ 270 (394)
+++|++++|.++..++|+||||+.+|++|+|+||+|++|||||++|++++|+.|+++.|.++|||+|||+|++++...|+
T Consensus 190 nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~ 269 (409)
T PLN03010 190 YVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVS 269 (409)
T ss_pred cEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCeeE
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999876667899
Q ss_pred EEEEEeEEEeCCceeEEEEEecCC-----------------cccEEEEeEecCCCC-CCCCCcceeEEeEEEEEEEEEec
Q 041470 271 FVHVNNVSFTETQNGVRIKTWQGS-----------------YNPIVIDQYYCPHKH-CKNKTLAVKISDVTYNHILGTSN 332 (394)
Q Consensus 271 nI~i~n~~~~~~~~gi~ik~~~g~-----------------~~~i~i~~~y~~~~~-~~~~~~~~~i~nI~~~nI~~~~~ 332 (394)
||+|+||+|.++.+|+|||+|+|+ .+||.|++.|++... |....+.++|+||+|+||+++..
T Consensus 270 nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~ 349 (409)
T PLN03010 270 DVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTS 349 (409)
T ss_pred EEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeC
Confidence 999999999999999999999764 789999999987543 55567889999999999999987
Q ss_pred CCceEEEEecCCCCeecEEEEeEEEEeecCCCCcceeeeccccCCCCCcccCCCcCCc
Q 041470 333 GETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVRGTADPGVFPKVSCLQV 390 (394)
Q Consensus 333 ~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~C~~~~~~~~~~~~~~~~c~~~ 390 (394)
...++.|.|++..||+||+|+||+++... ++++.+.|.|+++.+.+ +.+|++|+-.
T Consensus 350 ~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~-g~~~~~~C~nv~g~~~~-~~~~~~C~~~ 405 (409)
T PLN03010 350 NENAITLKCSAITHCKDVVMDDIDVTMEN-GEKPKVECQNVEGESSD-TDLMRDCFKN 405 (409)
T ss_pred CCccEEEEeCCCCCEeceEEEEEEEEecC-CCccceEeeCccccccC-CCCCCccccc
Confidence 66799999999999999999999999887 66678999999999988 8999999943
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=6.5e-75 Score=571.39 Aligned_cols=347 Identities=41% Similarity=0.722 Sum_probs=309.9
Q ss_pred CCCCceEEeeecCcCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccC
Q 041470 30 GAIGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPR 109 (394)
Q Consensus 30 ~~~~~~~nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~ 109 (394)
+....+|||+||||+|||++|||+|||+||++||+.. ||++|+||+| +|+++++.|+++ |++ ...|++ +|+++.
T Consensus 31 ~~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~-Ggg~V~vP~G-~yl~g~i~lkgp-c~~-~s~v~l--~L~~s~ 104 (404)
T PLN02188 31 GSSTFLFDVRSFGARANGHTDDSKAFMAAWKAACAST-GAVTLLIPPG-TYYIGPVQFHGP-CTN-VSSLTF--TLKAAT 104 (404)
T ss_pred cCCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccC-CCeEEEECCC-eEEEEeEEeCCC-cCc-ceeEEE--EEEcCC
Confidence 5567899999999999999999999999998789876 7899999999 999999999987 765 334444 999999
Q ss_pred CCCCCcCCCCCCccccEEEeeeeceEEEeceEEeCCCccccccC-------CCCCceeEEEecccceEEeeeeEeCCCCc
Q 041470 110 DPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLS-------CKHDKIGLVVANSNNVHIDDLTFEDSPQM 182 (394)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~-------~~~~p~~i~~~~~~nv~I~~vti~ns~~~ 182 (394)
++.+|+. ...|+.+..++||+|+|.|+|||+|+.||+.. +..||+++.|.+|+|++|++++++|+|+|
T Consensus 105 d~~~y~~-----~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w 179 (404)
T PLN02188 105 DLSRYGS-----GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFF 179 (404)
T ss_pred CHHHCCC-----ccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCe
Confidence 9999972 34688888899999999999999999999632 23579999999999999999999999999
Q ss_pred eeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCC
Q 041470 183 HIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGM 262 (394)
Q Consensus 183 ~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~ 262 (394)
++++..|++|+|++++|.++.+++|+||||+.+|++|+|+||+|.+|||||++|++++||+|+||+|..+|||+|||+|+
T Consensus 180 ~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~ 259 (404)
T PLN02188 180 HIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGR 259 (404)
T ss_pred EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCC
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCEEEEEEEeEEEeCCceeEEEEEecC----C---------------cccEEEEeEecCCCCCC-CCCcceeEEeE
Q 041470 263 KGRNEKVEFVHVNNVSFTETQNGVRIKTWQG----S---------------YNPIVIDQYYCPHKHCK-NKTLAVKISDV 322 (394)
Q Consensus 263 ~~~~~~v~nI~i~n~~~~~~~~gi~ik~~~g----~---------------~~~i~i~~~y~~~~~~~-~~~~~~~i~nI 322 (394)
+.+.+.|+||+|+||+|.++.+|+|||||++ + .+||.|++.|++...|. ...+.+.|+||
T Consensus 260 ~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nI 339 (404)
T PLN02188 260 YPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDI 339 (404)
T ss_pred CCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeE
Confidence 7667889999999999999999999999954 2 68999999998754443 23457899999
Q ss_pred EEEEEEEEecCCceEEEEecCCCCeecEEEEeEEEEeecCCCCcceeeeccccCCCCCcccCCCcC
Q 041470 323 TYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKPEKKTSSYCSNVRGTADPGVFPKVSCL 388 (394)
Q Consensus 323 ~~~nI~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~C~~~~~~~~~~~~~~~~c~ 388 (394)
+|+||+++.....++.+.|+++.||+||+|+||+++.+..+++..+.|.|++|.+.+ +++|++|+
T Consensus 340 t~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g-~~~p~~C~ 404 (404)
T PLN02188 340 YFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIG-TQIPPPCP 404 (404)
T ss_pred EEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcc-cCcCCCCC
Confidence 999999998766689999999999999999999999875124457999999999998 78889996
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=4.6e-55 Score=424.00 Aligned_cols=296 Identities=35% Similarity=0.627 Sum_probs=254.6
Q ss_pred CCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEeeeeceEEEeceEEeCCCc
Q 041470 68 SSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGS 147 (394)
Q Consensus 68 gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~ 147 (394)
++++|+||+| +|+++++.|++. |++ ++.+.++|++.++.....|+ . .+||++.+++|++|+|.|+|||+|+
T Consensus 5 ~~~~v~vP~g-~~~~~~~~l~~~-l~~-~~~~~l~G~~~~~~~~~~~~-----~-~~~i~~~~~~ni~i~G~G~IDG~G~ 75 (326)
T PF00295_consen 5 GGGTVVVPAG-TYLLGPLFLKST-LHS-DVGLTLDGTINFSYDNWEGP-----N-SALIYAENAENITITGKGTIDGNGQ 75 (326)
T ss_dssp EEESEEESTS-TEEEEETSEETE-CET-TCEEEEESEEEEG-EESTSE-------SEEEEEESEEEEECTTSSEEE--GG
T ss_pred cCCEEEECCC-CeEEceeEEEcc-cCC-CeEEEEEEEEEeCCCcccCC-----c-cEEEEEEceEEEEecCCceEcCchh
Confidence 5679999999 899999999853 445 78888899999874444433 2 6899999999999999999999999
Q ss_pred cccccCCC------CCceeEEEecccceEEeeeeEeCCCCceeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEE
Q 041470 148 NWWKLSCK------HDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSI 221 (394)
Q Consensus 148 ~~~~~~~~------~~p~~i~~~~~~nv~I~~vti~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I 221 (394)
.||+..+. .||+++.|.+|++++|++++++|+|+|++++..|++++|++++|.++...+|+||||+.+|+||+|
T Consensus 76 ~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I 155 (326)
T PF00295_consen 76 AWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTI 155 (326)
T ss_dssp GTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEE
T ss_pred hhhccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEE
Confidence 99985543 579999999999999999999999999999999999999999999987779999999999999999
Q ss_pred EeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCCCCCEEEEEEEeEEEeCCceeEEEEEecCC-------
Q 041470 222 AHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGS------- 294 (394)
Q Consensus 222 ~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~~gi~ik~~~g~------- 294 (394)
+||+++++||||++|++..||+|+||+|.++||++|||++..+....|+||+|+||+|.++.+|++||+|+++
T Consensus 156 ~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~nI 235 (326)
T PF00295_consen 156 ENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSNI 235 (326)
T ss_dssp ESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEEE
T ss_pred EEeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEEece
Confidence 9999999999999999888999999999999999999998654445799999999999999999999999653
Q ss_pred ----------cccEEEEeEecCCCCCCCCCcceeEEeEEEEEEEEEecCCceEEEEecCCCCeecEEEEeEEEEeecCCC
Q 041470 295 ----------YNPIVIDQYYCPHKHCKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGHVKPEK 364 (394)
Q Consensus 295 ----------~~~i~i~~~y~~~~~~~~~~~~~~i~nI~~~nI~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~ 364 (394)
.+||.|++.|.....+..+.+.+.|+||+|+||+++.....++.+.|.++.||+||+|+||+++. +
T Consensus 236 ~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~----g 311 (326)
T PF00295_consen 236 TFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG----G 311 (326)
T ss_dssp EEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES----S
T ss_pred EEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc----C
Confidence 68999999998744444445678999999999999988766899999999999999999999996 2
Q ss_pred CcceeeeccccC
Q 041470 365 KTSSYCSNVRGT 376 (394)
Q Consensus 365 ~~~~~C~~~~~~ 376 (394)
+..+.|.|++..
T Consensus 312 ~~~~~c~nv~~~ 323 (326)
T PF00295_consen 312 KKPAQCKNVPSG 323 (326)
T ss_dssp BSESEEBSCCTT
T ss_pred CcCeEEECCCCC
Confidence 467899998754
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.2e-42 Score=342.93 Aligned_cols=250 Identities=31% Similarity=0.487 Sum_probs=213.7
Q ss_pred CCCCceEEeeecCcCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEE-c-eEEEc
Q 041470 30 GAIGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQI-D-GHLVA 107 (394)
Q Consensus 30 ~~~~~~~nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~-~-g~l~~ 107 (394)
.+....++|.+|||+|||.+|+++|||+||+ +|+.. +|++|+||+| +|+.++|.|+ | +++|++ + ++|++
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~-~ca~a-~Gg~V~lPaG-tylsg~l~LK-----S-~~~L~l~egatl~~ 147 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAID-ACASA-GGGTVLLPAG-TYLSGPLFLK-----S-NVTLHLAEGATLLA 147 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHHH-hhhhh-cCceEEECCc-eeEeeeEEEe-----c-ccEEEecCCceeeC
Confidence 3466789999999999999999999999999 57655 8999999999 9999999996 5 778877 3 59999
Q ss_pred cCCCCCCcC-C-------C----------------C--CCccccEEEeeeeceE-EEeceEEeCCC----ccccccCC--
Q 041470 108 PRDPHAWNT-C-------D----------------G--SKCRQWIQFKKFGGLF-IRGVGSINGQG----SNWWKLSC-- 154 (394)
Q Consensus 108 ~~~~~~~~~-~-------~----------------~--~~~~~~i~~~~~~nv~-I~G~G~idg~g----~~~~~~~~-- 154 (394)
+.++.+|+. . . + .....++.....+|.. |.|.|+++|++ ..||....
T Consensus 148 ~~~p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~ 227 (542)
T COG5434 148 SSNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAV 227 (542)
T ss_pred CCChhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccch
Confidence 999999983 1 0 0 0011223333345666 89999999974 22775433
Q ss_pred -----C--CCceeEEEecccceEEeeeeEeCCCCceeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEe
Q 041470 155 -----K--HDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIIS 227 (394)
Q Consensus 155 -----~--~~p~~i~~~~~~nv~I~~vti~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~ 227 (394)
. .||.++.+..|+|+.+++++|.+++.|++|+..|+|++++|++|.+.... |+|||++.+|+||+|++|+|.
T Consensus 228 ~~~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fd 306 (542)
T COG5434 228 ETRIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFD 306 (542)
T ss_pred hhcccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEe
Confidence 1 37999999999999999999999999999999999999999999997655 999999999999999999999
Q ss_pred cCCceEEeCCC-----------CeeEEEEeeEecCCce-eEEeecCCcCCCCCEEEEEEEeEEEeCCceeEEEEEecC
Q 041470 228 TGDDCVSIGDG-----------SSHLNITNIFCGPGHG-ISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQG 293 (394)
Q Consensus 228 ~gDD~iai~s~-----------~~nV~i~n~~~~~~~g-i~iGs~g~~~~~~~v~nI~i~n~~~~~~~~gi~ik~~~g 293 (394)
+|||||++|++ ++||+|+||++..+|| +.+||| +.+.++||++|||.|.++.+|+|||+..+
T Consensus 307 tgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~ 380 (542)
T COG5434 307 TGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDG 380 (542)
T ss_pred cCCceEEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeecc
Confidence 99999999996 5899999999999998 889999 57899999999999999999999999854
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.93 E-value=3.6e-24 Score=208.67 Aligned_cols=229 Identities=17% Similarity=0.202 Sum_probs=159.7
Q ss_pred CCCCceEEeeecCcCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEc-eEEEcc
Q 041470 30 GAIGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQID-GHLVAP 108 (394)
Q Consensus 30 ~~~~~~~nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~-g~l~~~ 108 (394)
..+.+.+++++|||++||.+|+|+|||+||++ |+. ++++|.+|+| +|+.++|.|+. +++|... +....
T Consensus 32 ~~p~r~~dv~~fGa~~dG~td~T~ALQaAIda-Aa~--gG~tV~Lp~G-~Y~~G~L~L~s------pltL~G~~gAt~~- 100 (455)
T TIGR03808 32 LTSTLGRDATQYGVRPNSPDDQTRALQRAIDE-AAR--AQTPLALPPG-VYRTGPLRLPS------GAQLIGVRGATRL- 100 (455)
T ss_pred CCCccCCCHHHcCcCCCCcchHHHHHHHHHHH-hhc--CCCEEEECCC-ceecccEEECC------CcEEEecCCcEEE-
Confidence 34556699999999999999999999999995 443 4789999999 99999999973 6777664 22100
Q ss_pred CCCCCCcCCCCCCccccEEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCceeEEec
Q 041470 109 RDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFER 188 (394)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~~i~~~~ 188 (394)
.+. +. ..++...++++|+|+|. +|+|+|..|. .+|.+|++..|++++|++++|+++..|++.+..
T Consensus 101 ----vId---G~--~~lIiai~A~nVTIsGL-tIdGsG~dl~-----~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~ 165 (455)
T TIGR03808 101 ----VFT---GG--PSLLSSEGADGIGLSGL-TLDGGGIPLP-----QRRGLIHCQGGRDVRITDCEITGSGGNGIWLET 165 (455)
T ss_pred ----EEc---CC--ceEEEEecCCCeEEEee-EEEeCCCccc-----CCCCEEEEccCCceEEEeeEEEcCCcceEEEEc
Confidence 001 11 46676777899999996 9999997654 357799999999999999999999999999999
Q ss_pred ee----------------------cEEEEeEEEECCCC--------------------------------CCCCCeeeee
Q 041470 189 ST----------------------NIEATNLTIMAPGN--------------------------------SPNTDGIHIQ 214 (394)
Q Consensus 189 ~~----------------------nv~i~~~~i~~~~~--------------------------------~~n~DGi~~~ 214 (394)
|+ ++.|++-+|....+ ....+||+++
T Consensus 166 ~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~ 245 (455)
T TIGR03808 166 VSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAF 245 (455)
T ss_pred CcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEE
Confidence 99 55565555554332 2345666666
Q ss_pred CcccEEEEeEEEecCC-ceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCCCCCEEEEEEEeEEEeCCceeEEEEEe
Q 041470 215 HSSNVSIAHSIISTGD-DCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTW 291 (394)
Q Consensus 215 ~s~~v~I~n~~i~~gD-D~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~~gi~ik~~ 291 (394)
.+.+++|++++|+..+ |+|-..+ ++|+.|+++.|..-+=.++-++ + ..+.=.|+|+++.+...|+.+..+
T Consensus 246 ~a~~v~V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym--f----s~~g~~i~~N~~~g~~~G~av~nf 316 (455)
T TIGR03808 246 RAGNVIVRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE--F----AFEGAVIANNTVDGAAVGVSVCNF 316 (455)
T ss_pred ccCCeEEECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE--E----eCCCcEEeccEEecCcceEEEEee
Confidence 6666666666666666 6666666 4566666666653211122111 1 011123666666666666666665
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.87 E-value=9.3e-21 Score=173.99 Aligned_cols=214 Identities=25% Similarity=0.402 Sum_probs=138.1
Q ss_pred eEEeeecCcCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCCCeeEeec-ceeccCccccceEEEEEce----EEEccC
Q 041470 35 AFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQP-LTFSGEICKSNSITFQIDG----HLVAPR 109 (394)
Q Consensus 35 ~~nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~-l~l~~~~~~s~~v~l~~~g----~l~~~~ 109 (394)
.+||+||||++||++|||+|||+||+++... ++++|+||+| +|+++. |.+. + +++|+++| .+....
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~~--~g~~v~~P~G-~Y~i~~~l~~~-----s-~v~l~G~g~~~~~~~~~~ 71 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAAA--GGGVVYFPPG-TYRISGTLIIP-----S-NVTLRGAGGNSTILFLSG 71 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCST--TSEEEEE-SE-EEEESS-EEE------T-TEEEEESSTTTEEEEECT
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhcccC--CCeEEEEcCc-EEEEeCCeEcC-----C-CeEEEccCCCeeEEEecC
Confidence 4799999999999999999999999644444 7999999999 999985 7775 3 79999864 344333
Q ss_pred CCCCCcCCCCCCccccEEEee-eec--eEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCceeEE
Q 041470 110 DPHAWNTCDGSKCRQWIQFKK-FGG--LFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAF 186 (394)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~-~~n--v~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~~i~~ 186 (394)
....+.. ......+.. -.+ +.|++ -+|++.+...-. ....+.+..++++.|+++++.++...++.+
T Consensus 72 ~~~~~~~-----~~~~~~~~~~~~~~~~~i~n-l~i~~~~~~~~~-----~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~ 140 (225)
T PF12708_consen 72 SGDSFSV-----VPGIGVFDSGNSNIGIQIRN-LTIDGNGIDPNN-----NNNGIRFNSSQNVSISNVRIENSGGDGIYF 140 (225)
T ss_dssp TTSTSCC-----EEEEEECCSCSCCEEEEEEE-EEEEETCGCE-S-----CEEEEEETTEEEEEEEEEEEES-SS-SEEE
T ss_pred ccccccc-----ccceeeeecCCCCceEEEEe-eEEEcccccCCC-----CceEEEEEeCCeEEEEeEEEEccCccEEEE
Confidence 3222220 001111111 011 11333 334444332210 135788888999999999999988888888
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeeeC-cccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecC--CceeEEeecCCc
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQH-SSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGP--GHGISIGSLGMK 263 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~~-s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~--~~gi~iGs~g~~ 263 (394)
..++...+.+..... ++.+.. +.++.+.++.+..+++++.. +.+++.++||++.. .+||.+-..
T Consensus 141 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~i~n~~~~~~~~~gi~i~~~--- 207 (225)
T PF12708_consen 141 NTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIIL--GNNNITISNNTFEGNCGNGINIEGG--- 207 (225)
T ss_dssp ECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEEC--EEEEEEEECEEEESSSSESEEEEEC---
T ss_pred EccccCcEeecccce--------eeeeccceeEEEECCccccCCCceeEe--ecceEEEEeEEECCccceeEEEECC---
Confidence 766555554433221 344443 46677799999999988433 34899999999986 378888443
Q ss_pred CCCCCEEEEEEEeEEEeCCceeEE
Q 041470 264 GRNEKVEFVHVNNVSFTETQNGVR 287 (394)
Q Consensus 264 ~~~~~v~nI~i~n~~~~~~~~gi~ 287 (394)
.+++|+|++|.++..||.
T Consensus 208 ------~~~~i~n~~i~~~~~g~~ 225 (225)
T PF12708_consen 208 ------SNIIISNNTIENCDDGID 225 (225)
T ss_dssp ------SEEEEEEEEEESSSEEEE
T ss_pred ------eEEEEEeEEEECCccCcC
Confidence 249999999999988873
No 11
>PLN02793 Probable polygalacturonase
Probab=99.79 E-value=4.7e-17 Score=162.87 Aligned_cols=218 Identities=16% Similarity=0.182 Sum_probs=162.1
Q ss_pred ceEEEEEceEEEccCCCCCCcCC---CC----CCccccEEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEeccc
Q 041470 95 NSITFQIDGHLVAPRDPHAWNTC---DG----SKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSN 167 (394)
Q Consensus 95 ~~v~l~~~g~l~~~~~~~~~~~~---~~----~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~ 167 (394)
+++++...|+|.+... ..|... .. .....+|.+.+++|++|+|--+.+ ++.| .+++.+|+
T Consensus 143 ~ni~ItG~G~IDG~G~-~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~n---Sp~~---------~i~~~~~~ 209 (443)
T PLN02793 143 NHLTVEGGGTVNGMGH-EWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVID---SQQM---------HIAFTNCR 209 (443)
T ss_pred ceEEEEeceEEECCCc-ccccccccccCCCCccCCceEEEEEeeccEEEECeEEEc---CCCe---------EEEEEccC
Confidence 4899999999987542 233211 00 112347899999999999955543 3455 68899999
Q ss_pred ceEEeeeeEeCCC----CceeEEeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCC-----
Q 041470 168 NVHIDDLTFEDSP----QMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGD----- 237 (394)
Q Consensus 168 nv~I~~vti~ns~----~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s----- 237 (394)
|++|++++|.++. ..+|++..|+||+|+|++|.+ ..|.|-+. +|+||+|+||....|+ +|+|+|
T Consensus 210 nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-----gDDcIaik~~s~nI~I~n~~c~~Gh-GisIGSlg~~~ 283 (443)
T PLN02793 210 RVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-----GDDCISIVGNSSRIKIRNIACGPGH-GISIGSLGKSN 283 (443)
T ss_pred cEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-----CCCeEEecCCcCCEEEEEeEEeCCc-cEEEecccCcC
Confidence 9999999999753 357999999999999999998 45788886 6899999999998775 699998
Q ss_pred ---CCeeEEEEeeEecCC-ceeEEeecCCcCCCCCEEEEEEEeEEEeCCceeEEEEEecCC--------c-----ccEEE
Q 041470 238 ---GSSHLNITNIFCGPG-HGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGS--------Y-----NPIVI 300 (394)
Q Consensus 238 ---~~~nV~i~n~~~~~~-~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~~gi~ik~~~g~--------~-----~~i~i 300 (394)
+.+||+|+||++.+. +|++|++... ..+.++||+|+|++|.+..++|.|...+.. . ..|.+
T Consensus 284 ~~~~V~nV~v~n~~~~~t~~GirIKt~~g--~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~ 361 (443)
T PLN02793 284 SWSEVRDITVDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISF 361 (443)
T ss_pred CCCcEEEEEEEccEEeCCCceEEEEEeCC--CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEE
Confidence 268999999999876 8999998632 247899999999999999999999886421 1 12333
Q ss_pred EeEecCCCCC----CCCCcceeEEeEEEEEEEEEecC
Q 041470 301 DQYYCPHKHC----KNKTLAVKISDVTYNHILGTSNG 333 (394)
Q Consensus 301 ~~~y~~~~~~----~~~~~~~~i~nI~~~nI~~~~~~ 333 (394)
.......... -...+..+++||+|+||+++...
T Consensus 362 ~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~ 398 (443)
T PLN02793 362 VHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSST 398 (443)
T ss_pred EEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecC
Confidence 3322211100 01124568999999999988653
No 12
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.79 E-value=7e-17 Score=159.88 Aligned_cols=219 Identities=16% Similarity=0.198 Sum_probs=162.4
Q ss_pred ceEEEEEceEEEccCCCCCCcCCC------CCCccccEEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccc
Q 041470 95 NSITFQIDGHLVAPRDPHAWNTCD------GSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNN 168 (394)
Q Consensus 95 ~~v~l~~~g~l~~~~~~~~~~~~~------~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~n 168 (394)
.+++|...|+|.+... ..|+... ......++.+.+++|+.|+|- .-..+++| .+++.+|+|
T Consensus 122 ~ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gi---tl~nSp~w---------~i~~~~~~~ 188 (404)
T PLN02188 122 NGLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGI---TSVNSKFF---------HIALVECRN 188 (404)
T ss_pred eeEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCe---EEEcCCCe---------EEEEEcccc
Confidence 3788888899988653 3443210 111234789999999999993 33455667 799999999
Q ss_pred eEEeeeeEeCCC----CceeEEeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCC------
Q 041470 169 VHIDDLTFEDSP----QMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGD------ 237 (394)
Q Consensus 169 v~I~~vti~ns~----~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s------ 237 (394)
++|++++|.++. ..+|++..|++|+|+|++|.+ ..|+|.+. +++||+|+|+....++ +|+++|
T Consensus 189 v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDDcIaiksg~~nI~I~n~~c~~gh-GisiGSlG~~~~ 262 (404)
T PLN02188 189 FKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-----GDDCISIGQGNSQVTITRIRCGPGH-GISVGSLGRYPN 262 (404)
T ss_pred EEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCcEEEEccCCccEEEEEEEEcCCC-cEEeCCCCCCCc
Confidence 999999998743 257999999999999999999 45789986 5789999999997764 699988
Q ss_pred --CCeeEEEEeeEecCC-ceeEEeecCCcCCCCCEEEEEEEeEEEeCCceeEEEEEecCC-------------cccEEEE
Q 041470 238 --GSSHLNITNIFCGPG-HGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGS-------------YNPIVID 301 (394)
Q Consensus 238 --~~~nV~i~n~~~~~~-~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~~gi~ik~~~g~-------------~~~i~i~ 301 (394)
+.+||+|+||++..+ +|++|++....+..+.++||+|+|++|.+..++|.|...+.. -..|.++
T Consensus 263 ~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~ 342 (404)
T PLN02188 263 EGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFK 342 (404)
T ss_pred CCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEE
Confidence 269999999999886 799999863332357899999999999999999999874321 1223333
Q ss_pred eEecCCCCC----CCCCcceeEEeEEEEEEEEEec
Q 041470 302 QYYCPHKHC----KNKTLAVKISDVTYNHILGTSN 332 (394)
Q Consensus 302 ~~y~~~~~~----~~~~~~~~i~nI~~~nI~~~~~ 332 (394)
......... ....+..+++||+|+||+++..
T Consensus 343 nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 343 NIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred EEEEEecCceEEEEEECCCCCEeeEEEEeeEEEec
Confidence 333221110 0122456799999999999865
No 13
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.77 E-value=1e-16 Score=157.98 Aligned_cols=256 Identities=14% Similarity=0.196 Sum_probs=146.1
Q ss_pred CCEEEecCCCeeEeec---ceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEeeeeceEEEeceEEeCC
Q 041470 69 SPTMHVPHDKSFKLQP---LTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQ 145 (394)
Q Consensus 69 g~~V~iP~G~tY~~~~---l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~ 145 (394)
-.++||++| +|.++. +.|... .+-++|.-++-+++ ++.+....+|++|.|+|+|.|.
T Consensus 232 ~~~lYF~PG-Vy~ig~~~~l~L~sn---~~~VYlApGAyVkG----------------Af~~~~~~~nv~i~G~GVLSGe 291 (582)
T PF03718_consen 232 KDTLYFKPG-VYWIGSDYHLRLPSN---TKWVYLAPGAYVKG----------------AFEYTDTQQNVKITGRGVLSGE 291 (582)
T ss_dssp SSEEEE-SE-EEEEBCTC-EEE-TT-----EEEE-TTEEEES-----------------EEE---SSEEEEESSSEEE-T
T ss_pred cceEEeCCc-eEEeCCCccEEECCC---ccEEEEcCCcEEEE----------------EEEEccCCceEEEEeeEEEcCc
Confidence 459999999 999985 666532 01233433344443 3333356799999999999988
Q ss_pred CccccccCCCC-------------CceeEEEe---cccceEEeeeeEeCCCCceeEEecee----cEEEEeEEEECCCCC
Q 041470 146 GSNWWKLSCKH-------------DKIGLVVA---NSNNVHIDDLTFEDSPQMHIAFERST----NIEATNLTIMAPGNS 205 (394)
Q Consensus 146 g~~~~~~~~~~-------------~p~~i~~~---~~~nv~I~~vti~ns~~~~i~~~~~~----nv~i~~~~i~~~~~~ 205 (394)
...|.....+. .-+++.+. .+.++.++|++|.++|+|.+.+..-+ +..|+|.++... +-
T Consensus 292 ~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGa-W~ 370 (582)
T PF03718_consen 292 QYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGA-WY 370 (582)
T ss_dssp TS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----C
T ss_pred ceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeee-EE
Confidence 76653211110 12455543 45689999999999999999999555 489999999975 44
Q ss_pred CCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCc-e--eEEeecCCcCCCCCEEEEEEEeEEEeCC
Q 041470 206 PNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGH-G--ISIGSLGMKGRNEKVEFVHVNNVSFTET 282 (394)
Q Consensus 206 ~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~-g--i~iGs~g~~~~~~~v~nI~i~n~~~~~~ 282 (394)
.++|||.+. ++-+|+||++++.||+|-+.. +++.|+||++|..+ | +.+|.. ...++||+|+|+.+..+
T Consensus 371 ~qtDGi~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~ 441 (582)
T PF03718_consen 371 FQTDGIELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHN 441 (582)
T ss_dssp TT----B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE-
T ss_pred eccCCcccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEee
Confidence 799999988 567889999999999997765 69999999999753 3 777764 45699999999999876
Q ss_pred ceeEEEEEecCCcccEEEEe-EecCCCCCCCCCcceeEEeEEEEEEEEEecCCceEEEEecCCCCeecEEEEeEEEEe
Q 041470 283 QNGVRIKTWQGSYNPIVIDQ-YYCPHKHCKNKTLAVKISDVTYNHILGTSNGETAVAFSCSTSTPCKNIIMKDIHLGH 359 (394)
Q Consensus 283 ~~gi~ik~~~g~~~~i~i~~-~y~~~~~~~~~~~~~~i~nI~~~nI~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~ 359 (394)
+. ++........|+-.+ .|.+-.......+.-.|++++|+||++.+.-...+.|. |-..-+|+.++|+.+..
T Consensus 442 r~---~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~--plqn~~nl~ikN~~~~~ 514 (582)
T PF03718_consen 442 RW---IWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIY--PLQNYDNLVIKNVHFES 514 (582)
T ss_dssp -----SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE----SEEEEEEEEEEEEECE
T ss_pred ee---ecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEe--ecCCCcceEEEEeeccc
Confidence 31 000011122333222 34221111233456689999999999887644344443 44556777788888874
No 14
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.77 E-value=1.4e-16 Score=158.45 Aligned_cols=215 Identities=15% Similarity=0.213 Sum_probs=161.0
Q ss_pred ceEEEEEceEEEccCCCCCCcCCCCCCccccEEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeee
Q 041470 95 NSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDL 174 (394)
Q Consensus 95 ~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~v 174 (394)
+++.|...|+|.+... ..|.. ......++.+.+++|+.|+|--+ ..++.| .+++.+|+|++|+++
T Consensus 113 ~~i~I~G~GtIDGqG~-~wW~~--~~~rP~~l~f~~~~nv~I~gitl---~NSp~w---------~i~i~~c~nV~i~~l 177 (456)
T PLN03003 113 EGLVIEGDGEINGQGS-SWWEH--KGSRPTALKFRSCNNLRLSGLTH---LDSPMA---------HIHISECNYVTISSL 177 (456)
T ss_pred cceEEeccceEeCCch-hhhhc--ccCCceEEEEEecCCcEEeCeEE---ecCCcE---------EEEEeccccEEEEEE
Confidence 4888888899987542 33431 11223478999999999999433 345566 699999999999999
Q ss_pred eEeCCC----CceeEEeceecEEEEeEEEECCCCCCCCCeeeeeC-cccEEEEeEEEecCCceEEeCCC--------Cee
Q 041470 175 TFEDSP----QMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQH-SSNVSIAHSIISTGDDCVSIGDG--------SSH 241 (394)
Q Consensus 175 ti~ns~----~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~-s~~v~I~n~~i~~gDD~iai~s~--------~~n 241 (394)
+|.++. ..+|++..|+||+|+|+.|.+. .|+|-+.+ |+||+|+||....++ +|+|+|- .+|
T Consensus 178 ~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tG-----DDCIaiksgs~NI~I~n~~c~~GH-GISIGSlg~~g~~~~V~N 251 (456)
T PLN03003 178 RINAPESSPNTDGIDVGASSNVVIQDCIIATG-----DDCIAINSGTSNIHISGIDCGPGH-GISIGSLGKDGETATVEN 251 (456)
T ss_pred EEeCCCCCCCCCcEeecCcceEEEEecEEecC-----CCeEEeCCCCccEEEEeeEEECCC-CeEEeeccCCCCcceEEE
Confidence 999753 2579999999999999999994 57888874 789999999998764 7999882 689
Q ss_pred EEEEeeEecCC-ceeEEeecCCcCCCCCEEEEEEEeEEEeCCceeEEEEEecCC----------cccEEEE-----eEec
Q 041470 242 LNITNIFCGPG-HGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGS----------YNPIVID-----QYYC 305 (394)
Q Consensus 242 V~i~n~~~~~~-~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~~gi~ik~~~g~----------~~~i~i~-----~~y~ 305 (394)
|+|+||++.++ +|++|++..+ ..+.++||+|+|++|.+..++|.|...++. ...+.|+ ....
T Consensus 252 V~v~n~~~~~T~nGvRIKT~~G--g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~G 329 (456)
T PLN03003 252 VCVQNCNFRGTMNGARIKTWQG--GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIG 329 (456)
T ss_pred EEEEeeEEECCCcEEEEEEeCC--CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEE
Confidence 99999999886 7999998632 246899999999999999999999876431 1113333 2221
Q ss_pred CCCCC----CCCCcceeEEeEEEEEEEEEec
Q 041470 306 PHKHC----KNKTLAVKISDVTYNHILGTSN 332 (394)
Q Consensus 306 ~~~~~----~~~~~~~~i~nI~~~nI~~~~~ 332 (394)
..... -.-.+..+.+||+|+||.++..
T Consensus 330 Ts~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~ 360 (456)
T PLN03003 330 TSKSEYGVDFRCSERVPCTEIFLRDMKIETA 360 (456)
T ss_pred EeCccceEEEEeCCCCCeeeEEEEEEEEEec
Confidence 11110 0112456789999999998865
No 15
>PLN02218 polygalacturonase ADPG
Probab=99.77 E-value=1e-16 Score=159.80 Aligned_cols=216 Identities=14% Similarity=0.191 Sum_probs=159.2
Q ss_pred ceEEEEEc--eEEEccCCCCCCcCCC--C-----CCccccEEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEec
Q 041470 95 NSITFQID--GHLVAPRDPHAWNTCD--G-----SKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVAN 165 (394)
Q Consensus 95 ~~v~l~~~--g~l~~~~~~~~~~~~~--~-----~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~ 165 (394)
+++++... |+|.+... ..|.... . .....++.+.+++|+.|+|--+ ..++.| .+++.+
T Consensus 156 ~ni~I~G~~~GtIDG~G~-~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl---~nSp~w---------~i~~~~ 222 (431)
T PLN02218 156 NNLSVDGGSTGVVDGNGE-TWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRV---RNAQQI---------QISIEK 222 (431)
T ss_pred cEEEEECCCCcEEeCCch-hhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEE---EcCCCE---------EEEEEc
Confidence 47888885 88887542 2332110 0 1122468899999999999433 345566 799999
Q ss_pred ccceEEeeeeEeCCC----CceeEEeceecEEEEeEEEECCCCCCCCCeeeeeC-cccEEEEeEEEecCCceEEeCCC--
Q 041470 166 SNNVHIDDLTFEDSP----QMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQH-SSNVSIAHSIISTGDDCVSIGDG-- 238 (394)
Q Consensus 166 ~~nv~I~~vti~ns~----~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~-s~~v~I~n~~i~~gDD~iai~s~-- 238 (394)
|+|++|++++|.++. ..+|++..|+||+|+|++|.+. .|.|-+.+ |+||+|+||.+..|+ +|+|+|-
T Consensus 223 ~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tG-----DDcIaIksgs~nI~I~n~~c~~GH-GisIGS~g~ 296 (431)
T PLN02218 223 CSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTG-----DDCISIESGSQNVQINDITCGPGH-GISIGSLGD 296 (431)
T ss_pred eeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecC-----CceEEecCCCceEEEEeEEEECCC-CEEECcCCC
Confidence 999999999998742 3579999999999999999994 57888874 889999999998665 6999882
Q ss_pred ------CeeEEEEeeEecCC-ceeEEeecCCcCCCCCEEEEEEEeEEEeCCceeEEEEEecCC-------cccEEEE---
Q 041470 239 ------SSHLNITNIFCGPG-HGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGS-------YNPIVID--- 301 (394)
Q Consensus 239 ------~~nV~i~n~~~~~~-~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~~gi~ik~~~g~-------~~~i~i~--- 301 (394)
.+||+|+||++.++ +|++|++..+ ..+.++||+|+|++|.+..++|.|...+.. ...+.|+
T Consensus 297 ~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G--g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~ 374 (431)
T PLN02218 297 DNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG--GSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVV 374 (431)
T ss_pred CCCCceEEEEEEEccEEecCCcceEEeecCC--CCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEE
Confidence 57999999999875 7999998732 357999999999999999999999876421 1223333
Q ss_pred --eEecCCCC-C---CCCCcceeEEeEEEEEEEEEe
Q 041470 302 --QYYCPHKH-C---KNKTLAVKISDVTYNHILGTS 331 (394)
Q Consensus 302 --~~y~~~~~-~---~~~~~~~~i~nI~~~nI~~~~ 331 (394)
........ . ....+..+++||+|+||.++.
T Consensus 375 ~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~ 410 (431)
T PLN02218 375 YRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKG 410 (431)
T ss_pred EEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEEC
Confidence 22221110 0 011235679999999999874
No 16
>PLN02155 polygalacturonase
Probab=99.76 E-value=2.1e-16 Score=155.78 Aligned_cols=217 Identities=18% Similarity=0.187 Sum_probs=157.3
Q ss_pred eEEEEEceEEEccCCCCCCcCCC-CC---CccccEEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEE
Q 041470 96 SITFQIDGHLVAPRDPHAWNTCD-GS---KCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHI 171 (394)
Q Consensus 96 ~v~l~~~g~l~~~~~~~~~~~~~-~~---~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I 171 (394)
++.|.. |+|.+... ..|.... +. ....++.+.+++|+.|+|--+ ..++.| .+++.+|+|++|
T Consensus 116 ~i~i~G-G~iDGqG~-~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl---~nSp~w---------~i~~~~~~nv~i 181 (394)
T PLN02155 116 RFSLVG-GTFDARAN-GFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKS---MNSQVS---------HMTLNGCTNVVV 181 (394)
T ss_pred CCEEEc-cEEecCce-eEEEcccCCCCCCCcccceeEEEeeeEEEECeEE---EcCCCe---------EEEEECeeeEEE
Confidence 677765 78876542 2232111 11 112478999999999999333 345566 799999999999
Q ss_pred eeeeEeCCCC----ceeEEeceecEEEEeEEEECCCCCCCCCeeeeeC-cccEEEEeEEEecCCceEEeCCC--------
Q 041470 172 DDLTFEDSPQ----MHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQH-SSNVSIAHSIISTGDDCVSIGDG-------- 238 (394)
Q Consensus 172 ~~vti~ns~~----~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~-s~~v~I~n~~i~~gDD~iai~s~-------- 238 (394)
++++|.++.. .+|++..|+||+|+|++|.+ ..|+|-+.+ |+||+|+||....|+ +++|+|-
T Consensus 182 ~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~-----gDDcIaik~gs~nI~I~n~~c~~Gh-GisIGS~g~~~~~~~ 255 (394)
T PLN02155 182 RNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQT-----GDDCVAIGPGTRNFLITKLACGPGH-GVSIGSLAKELNEDG 255 (394)
T ss_pred EEEEEECCCCCCCCCccccccceeEEEEeeEEec-----CCceEEcCCCCceEEEEEEEEECCc-eEEeccccccCCCCc
Confidence 9999997532 57999999999999999999 457888875 789999999998765 6999882
Q ss_pred CeeEEEEeeEecCC-ceeEEeecCCcCCCCCEEEEEEEeEEEeCCceeEEEEEecCC--------cccEEEE-----eEe
Q 041470 239 SSHLNITNIFCGPG-HGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGS--------YNPIVID-----QYY 304 (394)
Q Consensus 239 ~~nV~i~n~~~~~~-~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~~gi~ik~~~g~--------~~~i~i~-----~~y 304 (394)
.+||+|+||++.+. +|++|++..+ +..+.++||+|+|++|.+..++|.|...+.. ...+.|+ ...
T Consensus 256 V~nV~v~n~~~~~t~~GirIKT~~~-~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~ 334 (394)
T PLN02155 256 VENVTVSSSVFTGSQNGVRIKSWAR-PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQ 334 (394)
T ss_pred EEEEEEEeeEEeCCCcEEEEEEecC-CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeE
Confidence 48999999999875 7999998411 1347899999999999999999999775321 1112333 222
Q ss_pred cCCCCC----CCCCcceeEEeEEEEEEEEEecC
Q 041470 305 CPHKHC----KNKTLAVKISDVTYNHILGTSNG 333 (394)
Q Consensus 305 ~~~~~~----~~~~~~~~i~nI~~~nI~~~~~~ 333 (394)
...... ....+..+++||+|+||.++...
T Consensus 335 gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~ 367 (394)
T PLN02155 335 GTSATQEAMKLVCSKSSPCTGITLQDIKLTYNK 367 (394)
T ss_pred EEecCCceEEEEeCCCCCEEEEEEEeeEEEecC
Confidence 211100 01123557999999999998753
No 17
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.75 E-value=1.8e-16 Score=154.16 Aligned_cols=216 Identities=20% Similarity=0.297 Sum_probs=155.8
Q ss_pred ceEEEEEceEEEccCCCCCCcCCC-----CCCccccEEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccce
Q 041470 95 NSITFQIDGHLVAPRDPHAWNTCD-----GSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNV 169 (394)
Q Consensus 95 ~~v~l~~~g~l~~~~~~~~~~~~~-----~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv 169 (394)
+++.+...|+|.+... ..|+... ......++.+.+++|+.|+|.-+. ..+.| .+++.+|+|+
T Consensus 60 ~ni~i~G~G~IDG~G~-~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~---nsp~w---------~~~~~~~~nv 126 (326)
T PF00295_consen 60 ENITITGKGTIDGNGQ-AWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIR---NSPFW---------HIHINDCDNV 126 (326)
T ss_dssp EEEECTTSSEEE--GG-GTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEE---S-SSE---------SEEEESEEEE
T ss_pred EEEEecCCceEcCchh-hhhccccccccccccccceeeeeeecceEEEeeEec---CCCee---------EEEEEccCCe
Confidence 3666766788887543 2332111 123346799999999999994333 44556 6899999999
Q ss_pred EEeeeeEeCCCC----ceeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcc-cEEEEeEEEecCCceEEeCC---C---
Q 041470 170 HIDDLTFEDSPQ----MHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSS-NVSIAHSIISTGDDCVSIGD---G--- 238 (394)
Q Consensus 170 ~I~~vti~ns~~----~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~-~v~I~n~~i~~gDD~iai~s---~--- 238 (394)
+|++++|.++.. .++++..|+||+|+|+.|.+ ..|.|.+.+.+ ||+|+||++..+. +++++| +
T Consensus 127 ~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~-----gDD~Iaiks~~~ni~v~n~~~~~gh-GisiGS~~~~~~~ 200 (326)
T PF00295_consen 127 TISNITINNPANSPNTDGIDIDSSKNVTIENCFIDN-----GDDCIAIKSGSGNILVENCTCSGGH-GISIGSEGSGGSQ 200 (326)
T ss_dssp EEESEEEEEGGGCTS--SEEEESEEEEEEESEEEES-----SSESEEESSEECEEEEESEEEESSS-EEEEEEESSSSE-
T ss_pred EEcceEEEecCCCCCcceEEEEeeeEEEEEEeeccc-----ccCcccccccccceEEEeEEEeccc-cceeeeccCCccc
Confidence 999999997643 47999999999999999999 45789998755 9999999998765 488876 2
Q ss_pred --CeeEEEEeeEecCC-ceeEEeecCCcCCCCCEEEEEEEeEEEeCCceeEEEEEecCC----c--------ccEEEEeE
Q 041470 239 --SSHLNITNIFCGPG-HGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGS----Y--------NPIVIDQY 303 (394)
Q Consensus 239 --~~nV~i~n~~~~~~-~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~~gi~ik~~~g~----~--------~~i~i~~~ 303 (394)
.+||+++||++..+ +|+.|++.. +..+.++||+|+|++|.+..++|.|...... . ..|.++..
T Consensus 201 ~~i~nV~~~n~~i~~t~~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~ni 278 (326)
T PF00295_consen 201 NDIRNVTFENCTIINTDNGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNI 278 (326)
T ss_dssp -EEEEEEEEEEEEESESEEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEE
T ss_pred cEEEeEEEEEEEeeccceEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEee
Confidence 37999999999875 899999863 2458999999999999999999999876321 1 11223322
Q ss_pred ecCCCC----CCCCCcceeEEeEEEEEEEEEe
Q 041470 304 YCPHKH----CKNKTLAVKISDVTYNHILGTS 331 (394)
Q Consensus 304 y~~~~~----~~~~~~~~~i~nI~~~nI~~~~ 331 (394)
...... .....+..+++||+|+||.++.
T Consensus 279 tg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 279 TGTSAGSSAISIDCSPGSPCSNITFENVNITG 310 (326)
T ss_dssp EEEESTSEEEEEE-BTTSSEEEEEEEEEEEES
T ss_pred EEEeccceEEEEEECCcCcEEeEEEEeEEEEc
Confidence 211110 0112244579999999999988
No 18
>PLN03010 polygalacturonase
Probab=99.74 E-value=1.6e-15 Score=150.07 Aligned_cols=209 Identities=20% Similarity=0.213 Sum_probs=155.2
Q ss_pred ceEEEEEceEEEccCCCCCCcCCCCCCccccEEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeee
Q 041470 95 NSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDL 174 (394)
Q Consensus 95 ~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~v 174 (394)
.++.|...|+|.+.. ..|. .++++.+++|+.|+|--++ .++.| .+++.+|++++|+++
T Consensus 139 ~nv~I~G~G~IDG~G--~~ww--------~~l~~~~~~nv~v~gitl~---nsp~~---------~i~i~~~~nv~i~~i 196 (409)
T PLN03010 139 SGLMIDGSGTIDGRG--SSFW--------EALHISKCDNLTINGITSI---DSPKN---------HISIKTCNYVAISKI 196 (409)
T ss_pred cccEEeeceEEeCCC--cccc--------ceEEEEeecCeEEeeeEEE---cCCce---------EEEEeccccEEEEEE
Confidence 477888888887643 2232 3588999999999994443 44566 689999999999999
Q ss_pred eEeCCC----CceeEEeceecEEEEeEEEECCCCCCCCCeeeeeC-cccEEEEeEEEecCCceEEeCCC--------Cee
Q 041470 175 TFEDSP----QMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQH-SSNVSIAHSIISTGDDCVSIGDG--------SSH 241 (394)
Q Consensus 175 ti~ns~----~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~-s~~v~I~n~~i~~gDD~iai~s~--------~~n 241 (394)
+|.++. ..+|++..|++|+|+|++|.+. .|+|-+.+ +.++.|+++....++ +|+|+|- .+|
T Consensus 197 ~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~g-----DDcIaiksgs~ni~I~~~~C~~gH-GisIGS~g~~~~~~~V~n 270 (409)
T PLN03010 197 NILAPETSPNTDGIDISYSTNINIFDSTIQTG-----DDCIAINSGSSNINITQINCGPGH-GISVGSLGADGANAKVSD 270 (409)
T ss_pred EEeCCCCCCCCCceeeeccceEEEEeeEEecC-----CCeEEecCCCCcEEEEEEEeECcC-CEEEccCCCCCCCCeeEE
Confidence 999753 2579999999999999999994 57888875 568888877776554 7999883 599
Q ss_pred EEEEeeEecCC-ceeEEeecCCcCCCCCEEEEEEEeEEEeCCceeEEEEEecCC--------cccEEEE-----eEecCC
Q 041470 242 LNITNIFCGPG-HGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTWQGS--------YNPIVID-----QYYCPH 307 (394)
Q Consensus 242 V~i~n~~~~~~-~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~~gi~ik~~~g~--------~~~i~i~-----~~y~~~ 307 (394)
|+|+||++..+ +|++|++..+ ..+.++||+|+|++|.+..++|.|...+.. ...+.|+ ......
T Consensus 271 V~v~n~~i~~t~~GirIKt~~G--~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~ 348 (409)
T PLN03010 271 VHVTHCTFNQTTNGARIKTWQG--GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTT 348 (409)
T ss_pred EEEEeeEEeCCCcceEEEEecC--CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEe
Confidence 99999999886 7999998732 357899999999999999999999876321 1223333 222211
Q ss_pred CCCC----CCCcceeEEeEEEEEEEEEecC
Q 041470 308 KHCK----NKTLAVKISDVTYNHILGTSNG 333 (394)
Q Consensus 308 ~~~~----~~~~~~~i~nI~~~nI~~~~~~ 333 (394)
.... .-....+.+||+|+||.++...
T Consensus 349 ~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~ 378 (409)
T PLN03010 349 SNENAITLKCSAITHCKDVVMDDIDVTMEN 378 (409)
T ss_pred CCCccEEEEeCCCCCEeceEEEEEEEEecC
Confidence 1000 0113456899999999998653
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.61 E-value=3.5e-14 Score=137.03 Aligned_cols=177 Identities=21% Similarity=0.303 Sum_probs=124.0
Q ss_pred HHHHHHHhhccCCCCCEEEecCCCeeEe-ecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEeeeec
Q 041470 55 FKDAWKATCKSSSSSPTMHVPHDKSFKL-QPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGG 133 (394)
Q Consensus 55 iq~Ai~~a~~~~~gg~~V~iP~G~tY~~-~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~~~~n 133 (394)
||+|+++ ++ .|.+|+||+| +|.+ .+|.+.. ++++|...|. +.
T Consensus 1 iQ~Ai~~-A~---~GDtI~l~~G-~Y~~~~~l~I~~-----~~Iti~G~g~---------------------------~~ 43 (314)
T TIGR03805 1 LQEALIA-AQ---PGDTIVLPEG-VFQFDRTLSLDA-----DGVTIRGAGM---------------------------DE 43 (314)
T ss_pred CHhHHhh-CC---CCCEEEECCC-EEEcceeEEEeC-----CCeEEEecCC---------------------------Cc
Confidence 6999985 44 3889999999 9986 3555531 1444433220 00
Q ss_pred eEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCceeEEeceecEEEEeEEEECCCC---CCCCCe
Q 041470 134 LFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGN---SPNTDG 210 (394)
Q Consensus 134 v~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~~i~~~~~~nv~i~~~~i~~~~~---~~n~DG 210 (394)
-+||+.++... ...+ ...+++++|++++++++..+++.+..|++++|+++++..... ....+|
T Consensus 44 ------tvid~~~~~~~-------~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~G 109 (314)
T TIGR03805 44 ------TILDFSGQVGG-------AEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYG 109 (314)
T ss_pred ------cEEecccCCCC-------CceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcce
Confidence 12333332100 1123 335789999999999998899999999999999999874321 135689
Q ss_pred eeeeCcccEEEEeEEEecC-CceEEeCCCCeeEEEEeeEecCC-ceeEEeecCCcCCCCCEEEEEEEeEEEeCCceeEEE
Q 041470 211 IHIQHSSNVSIAHSIISTG-DDCVSIGDGSSHLNITNIFCGPG-HGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRI 288 (394)
Q Consensus 211 i~~~~s~~v~I~n~~i~~g-DD~iai~s~~~nV~i~n~~~~~~-~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~~gi~i 288 (394)
|.+..|++++|++|+++.. |++|.++. +++++|+||+++.. .||.+-. ..++.++|+.+.+...|+.+
T Consensus 110 I~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi~v 179 (314)
T TIGR03805 110 IYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADVYNNIATNNTGGILV 179 (314)
T ss_pred EEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEEECCEEeccceeEEE
Confidence 9999999999999999864 55888876 78999999999765 5777732 24678888888888788888
Q ss_pred EEec
Q 041470 289 KTWQ 292 (394)
Q Consensus 289 k~~~ 292 (394)
-..+
T Consensus 180 ~~~p 183 (314)
T TIGR03805 180 FDLP 183 (314)
T ss_pred eecC
Confidence 5543
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=1.6e-11 Score=124.37 Aligned_cols=152 Identities=14% Similarity=0.247 Sum_probs=122.3
Q ss_pred ccEEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC---ceeEEeceecEEEEeEEEE
Q 041470 124 QWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ---MHIAFERSTNIEATNLTIM 200 (394)
Q Consensus 124 ~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~---~~i~~~~~~nv~i~~~~i~ 200 (394)
.++.+.+|.||.++|..+. ..+|| .+++..|+|++++|++|.+... .++++..|+|+.|++++|+
T Consensus 239 ~~~~l~~c~NV~~~g~~i~---ns~~~---------~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fd 306 (542)
T COG5434 239 RTVVLKGCRNVLLEGLNIK---NSPLW---------TVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFD 306 (542)
T ss_pred ceEEEeccceEEEeeeEec---CCCcE---------EEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEe
Confidence 4678889999999995553 45667 7999999999999999986644 4799999999999999999
Q ss_pred CCCCC------CCCCee-eeeCcccEEEEeEEEecCCceEEeCC----CCeeEEEEeeEecC-CceeEEeecCCcCCCCC
Q 041470 201 APGNS------PNTDGI-HIQHSSNVSIAHSIISTGDDCVSIGD----GSSHLNITNIFCGP-GHGISIGSLGMKGRNEK 268 (394)
Q Consensus 201 ~~~~~------~n~DGi-~~~~s~~v~I~n~~i~~gDD~iai~s----~~~nV~i~n~~~~~-~~gi~iGs~g~~~~~~~ 268 (394)
+.++. ...|+- ....+++++|+||++..++.++.+++ +.+||++|||.+.. ..|++|++.-.. .+.
T Consensus 307 tgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~--gG~ 384 (542)
T COG5434 307 TGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGR--GGG 384 (542)
T ss_pred cCCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeeccc--cee
Confidence 96552 222321 22347999999999999999998877 47999999999987 589999987544 489
Q ss_pred EEEEEEEeEEEeCCceeEEEE
Q 041470 269 VEFVHVNNVSFTETQNGVRIK 289 (394)
Q Consensus 269 v~nI~i~n~~~~~~~~gi~ik 289 (394)
++||+|+++.+.+...-..|.
T Consensus 385 v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 385 VRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred EEEEEEecccccCcccceeee
Confidence 999999999999875333333
No 21
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.72 E-value=1.8e-07 Score=86.92 Aligned_cols=141 Identities=26% Similarity=0.341 Sum_probs=93.7
Q ss_pred eEEEEEceEEEccCCCCCCcCCCCCCccccEEEeeeeceEEEece---EEeCCCccccccCCCCCceeEEEecccceEEe
Q 041470 96 SITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKKFGGLFIRGVG---SINGQGSNWWKLSCKHDKIGLVVANSNNVHID 172 (394)
Q Consensus 96 ~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G---~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~ 172 (394)
.+.|.+.|+|.++. +. ...+.+..++|++|.|.| .+-|- .+.+..+.||.|+
T Consensus 76 t~ii~v~Gti~~s~-ps----------~~k~~iki~sNkTivG~g~~a~~~g~--------------gl~i~~a~NVIir 130 (345)
T COG3866 76 TVIIVVKGTITAST-PS----------DKKITIKIGSNKTIVGSGADATLVGG--------------GLKIRDAGNVIIR 130 (345)
T ss_pred EEEEEEcceEeccC-CC----------CceEEEeeccccEEEeeccccEEEec--------------eEEEEeCCcEEEE
Confidence 35677788888763 11 013677788999999954 22221 2344445555555
Q ss_pred eeeEeCCCCceeEEeceecEEEEeEEEECCCCCCCCCeeee-eCcccEEEEeEEEec---------CCceEEeCCCCeeE
Q 041470 173 DLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHI-QHSSNVSIAHSIIST---------GDDCVSIGDGSSHL 242 (394)
Q Consensus 173 ~vti~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~-~~s~~v~I~n~~i~~---------gDD~iai~s~~~nV 242 (394)
+|+|+..+.| -++-|+|.+ ..++||+|++|++.. +|..+.|+.++.+|
T Consensus 131 Nltf~~~~~~----------------------d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyI 188 (345)
T COG3866 131 NLTFEGFYQG----------------------DPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYI 188 (345)
T ss_pred eeEEEeeccC----------------------CCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEE
Confidence 5555544321 123578888 568999999999975 46678899989999
Q ss_pred EEEeeEecCC-ceeEEeecCCcCCCCCEEEEEEEeEEEeCCc
Q 041470 243 NITNIFCGPG-HGISIGSLGMKGRNEKVEFVHVNNVSFTETQ 283 (394)
Q Consensus 243 ~i~n~~~~~~-~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~ 283 (394)
+|++|.|... -++-+|+.........-.+|++.++.|.+..
T Consensus 189 TiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~ 230 (345)
T COG3866 189 TISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY 230 (345)
T ss_pred EEEeeeeecCCeeeeeccCCcccccCCceeEEEecccccccc
Confidence 9999999875 4577776532111244568999999999853
No 22
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.61 E-value=2.9e-06 Score=82.19 Aligned_cols=135 Identities=17% Similarity=0.145 Sum_probs=103.2
Q ss_pred eeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeC-------CCCceeEEeceecEEEEeEEEECC
Q 041470 130 KFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFED-------SPQMHIAFERSTNIEATNLTIMAP 202 (394)
Q Consensus 130 ~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~n-------s~~~~i~~~~~~nv~i~~~~i~~~ 202 (394)
.+++|+|+|..+.+.. ...+.+..|++++|+++++.. ...+++.+..|++++|+++++...
T Consensus 61 ~a~~VtI~~ltI~~~~------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~ 128 (314)
T TIGR03805 61 TSDDVTLSDLAVENTK------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGA 128 (314)
T ss_pred EeCCeEEEeeEEEcCC------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECC
Confidence 3588999985432211 126778899999999999971 346889999999999999999874
Q ss_pred CCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecC-CceeEEeecCCcCCCCCEEEEEEEeEEEeC
Q 041470 203 GNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGP-GHGISIGSLGMKGRNEKVEFVHVNNVSFTE 281 (394)
Q Consensus 203 ~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~-~~gi~iGs~g~~~~~~~v~nI~i~n~~~~~ 281 (394)
..+||.+..|++++|+++++.....+|-+.. +.++.|+++++.. ..|+.+-..... .....++++|+++.+.+
T Consensus 129 ----~d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~-~~~~s~~~~v~~N~i~~ 202 (314)
T TIGR03805 129 ----SDAGIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNTGGILVFDLPGL-PQPGGSNVRVFDNIIFD 202 (314)
T ss_pred ----CcccEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccceeEEEeecCCC-CcCCccceEEECCEEEC
Confidence 3359999999999999999998888888875 6889999999876 467777443211 11245789999999986
Q ss_pred C
Q 041470 282 T 282 (394)
Q Consensus 282 ~ 282 (394)
.
T Consensus 203 n 203 (314)
T TIGR03805 203 N 203 (314)
T ss_pred C
Confidence 5
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.52 E-value=1.8e-06 Score=79.11 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=51.5
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCC
Q 041470 186 FERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGR 265 (394)
Q Consensus 186 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~ 265 (394)
+++|+||+|+|.++.+.+ .+|.|+||+|.++.+.. =-+.-.++|+++.||++.+..|+.
T Consensus 152 Fq~~kNvei~ns~l~sKD--------AFWn~eNVtVyDS~i~G----EYLgW~SkNltliNC~I~g~QpLC--------- 210 (277)
T PF12541_consen 152 FQYCKNVEIHNSKLDSKD--------AFWNCENVTVYDSVING----EYLGWNSKNLTLINCTIEGTQPLC--------- 210 (277)
T ss_pred eeceeeEEEEccEEeccc--------ccccCCceEEEcceEee----eEEEEEcCCeEEEEeEEeccCccE---------
Confidence 455666666666666532 13456666666666652 122222578888888887665554
Q ss_pred CCCEEEEEEEeEEEeCCceeEEE
Q 041470 266 NEKVEFVHVNNVSFTETQNGVRI 288 (394)
Q Consensus 266 ~~~v~nI~i~n~~~~~~~~gi~i 288 (394)
+++|++.+||+|.+++-++.-
T Consensus 211 --Y~~~L~l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 211 --YCDNLVLENCTMIDTDLAFEY 231 (277)
T ss_pred --eecceEEeCcEeecceeeeee
Confidence 578999999999988766665
No 24
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.42 E-value=1e-05 Score=75.04 Aligned_cols=134 Identities=25% Similarity=0.240 Sum_probs=103.4
Q ss_pred EEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCceeEEeceecEEEEeEEEECCCCC
Q 041470 126 IQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNS 205 (394)
Q Consensus 126 i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~~i~~~~~~nv~i~~~~i~~~~~~ 205 (394)
+++.+.++..|++.-+... ...+.+..+.+++|++.++.+. ..++++..+++++|++..+..
T Consensus 16 i~l~~~~~~~i~~n~i~~~-------------~~gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~---- 77 (236)
T PF05048_consen 16 IYLWNSSNNSIENNTISNS-------------RDGIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN---- 77 (236)
T ss_pred EEEEeCCCCEEEcCEEEeC-------------CCEEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc----
Confidence 5555666777766333221 1256788899999999999988 788999999999999999988
Q ss_pred CCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecC-CceeEEeecCCcCCCCCEEEEEEEeEEEeCC-c
Q 041470 206 PNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGP-GHGISIGSLGMKGRNEKVEFVHVNNVSFTET-Q 283 (394)
Q Consensus 206 ~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~-~~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~-~ 283 (394)
+..||.+..+.+.+|+++.+.....+|.+.. +.+.+|+++++.. ..||.+... .+.+|+++++.+. .
T Consensus 78 -n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~ 146 (236)
T PF05048_consen 78 -NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-SSNNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNTD 146 (236)
T ss_pred -cCCCEEEEcCCCcEEECCEecCCCceEEEee-CCceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCc
Confidence 3389999988877999999987767888876 5678888888864 367887431 5778889998887 7
Q ss_pred eeEEE
Q 041470 284 NGVRI 288 (394)
Q Consensus 284 ~gi~i 288 (394)
.||++
T Consensus 147 ~Gi~~ 151 (236)
T PF05048_consen 147 YGIYF 151 (236)
T ss_pred cceEE
Confidence 88884
No 25
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.42 E-value=1.1e-05 Score=74.63 Aligned_cols=206 Identities=22% Similarity=0.330 Sum_probs=106.8
Q ss_pred CCceEEeeecCcCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCCCee-Eee-cceeccCccccceEEEEEceEEEccC
Q 041470 32 IGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSF-KLQ-PLTFSGEICKSNSITFQIDGHLVAPR 109 (394)
Q Consensus 32 ~~~~~nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY-~~~-~l~l~~~~~~s~~v~l~~~g~l~~~~ 109 (394)
...++|+.||-.+ |=-++|..|+. .+.||++|+|-+. .+. ++.+.. .-+|.+.|.|++..
T Consensus 31 ~~~~vni~dy~~~-----dwiasfkqaf~-------e~qtvvvpagl~cenint~ifip~------gktl~v~g~l~gng 92 (464)
T PRK10123 31 ARQSVNINDYNPH-----DWIASFKQAFS-------EGQTVVVPAGLVCDNINTGIFIPP------GKTLHILGSLRGNG 92 (464)
T ss_pred CCceeehhhcCcc-----cHHHHHHHHhc-------cCcEEEecCccEecccccceEeCC------CCeEEEEEEeecCC
Confidence 5678999999874 55778888886 4789999999322 222 344432 45566666666531
Q ss_pred CCCCCcCCCCCCccccEEEeeeeceEEEec--eEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCC-CCceeEE
Q 041470 110 DPHAWNTCDGSKCRQWIQFKKFGGLFIRGV--GSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDS-PQMHIAF 186 (394)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~--G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns-~~~~i~~ 186 (394)
...++.-.+| .+.|+ |-+ ....+.+ ..+++.|+++.+..- |...|.+
T Consensus 93 ------------rgrfvlqdg~---qv~ge~~g~~--------------hnitldv-rgsdc~ikgiamsgfgpvtqiyi 142 (464)
T PRK10123 93 ------------RGRFVLQDGS---QVTGEEGGSM--------------HNITLDV-RGSDCTIKGLAMSGFGPVTQIYI 142 (464)
T ss_pred ------------ceeEEEecCC---EeecCCCcee--------------eeEEEee-ccCceEEeeeeecccCceeEEEE
Confidence 2233333332 23331 110 0111111 223455555555421 1122222
Q ss_pred ec-----eecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEec-CCceE----EeCCCCeeEEEEe-----eEecC
Q 041470 187 ER-----STNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIIST-GDDCV----SIGDGSSHLNITN-----IFCGP 251 (394)
Q Consensus 187 ~~-----~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~-gDD~i----ai~s~~~nV~i~n-----~~~~~ 251 (394)
.. -+|++|+++++.....+--..|+|-. -..+.|.||.+.. +.|+| ||.. +|++|++ .-|.+
T Consensus 143 ggk~prvmrnl~id~itv~~anyailrqgfhnq-~dgaritn~rfs~lqgdaiewnvaind--r~ilisdhvie~inctn 219 (464)
T PRK10123 143 GGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQ-IIGANITNCKFSDLQGDAIEWNVAIND--RDILISDHVIERINCTN 219 (464)
T ss_pred cCCCchhhhccEEccEEEeeccHHHHhhhhhhc-cccceeeccccccccCceEEEEEEecc--cceeeehheheeecccC
Confidence 22 34666666666653322223344322 2456666776653 33443 3333 4555544 44444
Q ss_pred C---ceeEEeecCC-----cCCCCCEEEEEEEeEEEeCCceeEEE
Q 041470 252 G---HGISIGSLGM-----KGRNEKVEFVHVNNVSFTETQNGVRI 288 (394)
Q Consensus 252 ~---~gi~iGs~g~-----~~~~~~v~nI~i~n~~~~~~~~gi~i 288 (394)
| +||.||-.|. |+....|+|..+.|++=.+++.-+.+
T Consensus 220 gkinwgigiglagstydn~ype~q~vknfvvanitgs~crqlvhv 264 (464)
T PRK10123 220 GKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHV 264 (464)
T ss_pred CcccceeeeeeccccccCCCchhhhhhhEEEEeccCcChhheEEe
Confidence 4 6788875443 34567788888888887666543333
No 26
>smart00656 Amb_all Amb_all domain.
Probab=98.41 E-value=6.3e-06 Score=73.99 Aligned_cols=98 Identities=26% Similarity=0.333 Sum_probs=71.6
Q ss_pred eEEeceecEEEEeEEEECCCC--CCCCCeeeeeCcccEEEEeEEEecC----------CceEEeCCCCeeEEEEeeEecC
Q 041470 184 IAFERSTNIEATNLTIMAPGN--SPNTDGIHIQHSSNVSIAHSIISTG----------DDCVSIGDGSSHLNITNIFCGP 251 (394)
Q Consensus 184 i~~~~~~nv~i~~~~i~~~~~--~~n~DGi~~~~s~~v~I~n~~i~~g----------DD~iai~s~~~nV~i~n~~~~~ 251 (394)
+.+..++||.|+|++|..... ..+.|+|.+.++++|+|++|.+..+ |..+.++.++.+|++++|.|..
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~ 113 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHN 113 (190)
T ss_pred EEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEec
Confidence 444445677777777765432 1467999999999999999999876 5667888889999999999976
Q ss_pred C-ceeEEeecCCcCCCCCEEEEEEEeEEEeCC
Q 041470 252 G-HGISIGSLGMKGRNEKVEFVHVNNVSFTET 282 (394)
Q Consensus 252 ~-~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~ 282 (394)
. .+.-+|+.-.. ......+|++.++.+.++
T Consensus 114 h~~~~liG~~d~~-~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 114 HWKVMLLGHSDSD-TDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred CCEEEEEccCCCc-cccccceEEEECcEEcCc
Confidence 4 46778764211 112245899999998764
No 27
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.41 E-value=1.3e-05 Score=73.51 Aligned_cols=91 Identities=16% Similarity=0.272 Sum_probs=54.7
Q ss_pred cccceEEeeeeEeCCCCceeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEE
Q 041470 165 NSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNI 244 (394)
Q Consensus 165 ~~~nv~I~~vti~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i 244 (394)
+++|++|++..+..+.. +..|++++++||.+..... .+|.|++|.++|+.+ . .|-..+.+ +||.+
T Consensus 77 Ys~~i~m~d~~i~apK~----fR~~~~i~L~nv~~~~A~E-------t~W~c~~i~l~nv~~-~-gdYf~m~s--~ni~i 141 (277)
T PF12541_consen 77 YSNNITMKDSVIQAPKM----FRECSNITLENVDIPDADE-------TLWNCRGIKLKNVQA-N-GDYFFMNS--ENIYI 141 (277)
T ss_pred EeCCEEEEeeeccCchH----hhcccCcEEEeeEeCCCcc-------cCEEeCCeEEEeEEE-e-ceEeeeec--cceEE
Confidence 35666666666666554 3467777777777744211 345677777777777 2 24455544 67777
Q ss_pred EeeEecCCceeEEeecCCcCCCCCEEEEEEEeEEEeC
Q 041470 245 TNIFCGPGHGISIGSLGMKGRNEKVEFVHVNNVSFTE 281 (394)
Q Consensus 245 ~n~~~~~~~gi~iGs~g~~~~~~~v~nI~i~n~~~~~ 281 (394)
.|..+. |.| ...+++||.|+|+++..
T Consensus 142 d~l~~~----------GnY-~Fq~~kNvei~ns~l~s 167 (277)
T PF12541_consen 142 DNLVLD----------GNY-SFQYCKNVEIHNSKLDS 167 (277)
T ss_pred eceEEe----------CCE-EeeceeeEEEEccEEec
Confidence 775553 222 24567777777777653
No 28
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.39 E-value=2.5e-06 Score=73.12 Aligned_cols=116 Identities=27% Similarity=0.350 Sum_probs=66.8
Q ss_pred EEEecccceEEeeeeEeCCCCceeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCe
Q 041470 161 LVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSS 240 (394)
Q Consensus 161 i~~~~~~nv~I~~vti~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~ 240 (394)
+.+....+++|++++|.+....++.+..+..++|++++|.. ...|+.+....++++++|.+.....++.+. ...
T Consensus 3 i~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~~ 76 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GSS 76 (158)
T ss_dssp EEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-C
T ss_pred EEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ecC
Confidence 45556666777777777777777777777777777777776 345677777677777777777655555555 356
Q ss_pred eEEEEeeEecCC--ceeEEeecCCcCCCCCEEEEEEEeEEEeCCc-eeEEEEE
Q 041470 241 HLNITNIFCGPG--HGISIGSLGMKGRNEKVEFVHVNNVSFTETQ-NGVRIKT 290 (394)
Q Consensus 241 nV~i~n~~~~~~--~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~-~gi~ik~ 290 (394)
+++|++|.+... .||.+.. ..++++|++++|.+.. .|+.+..
T Consensus 77 ~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~ 121 (158)
T PF13229_consen 77 NITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEG 121 (158)
T ss_dssp S-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEE
T ss_pred CceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEEC
Confidence 777777777653 3565531 1335667777777655 4555433
No 29
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.36 E-value=0.00011 Score=73.96 Aligned_cols=197 Identities=15% Similarity=0.202 Sum_probs=106.4
Q ss_pred CCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcC-CC-------CC-----CccccEE---Eeee
Q 041470 68 SSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNT-CD-------GS-----KCRQWIQ---FKKF 131 (394)
Q Consensus 68 gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~-~~-------~~-----~~~~~i~---~~~~ 131 (394)
...+|||-+| .|.=|++.+... + .++++...|+|.+.. -.|.. .. +. ....++. ..+.
T Consensus 255 n~~~VYlApG-AyVkGAf~~~~~--~-~nv~i~G~GVLSGe~--Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~ 328 (582)
T PF03718_consen 255 NTKWVYLAPG-AYVKGAFEYTDT--Q-QNVKITGRGVLSGEQ--YVYEADTEESYLHLSGAVKCHRESLKMLWHISANGG 328 (582)
T ss_dssp T--EEEE-TT-EEEES-EEE-----S-SEEEEESSSEEE-TT--S-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSS
T ss_pred CccEEEEcCC-cEEEEEEEEccC--C-ceEEEEeeEEEcCcc--eeEeccCCCCccccccccccchhhhhhhhhhccCCc
Confidence 3679999999 899998876632 2 389998899998642 11211 00 00 0113343 3345
Q ss_pred eceEEEeceEEeCCCccccccCCCCCceeEEEeccc----ceEEeeeeEeCCCCcee-EEeceecEEEEeEEEECCCCCC
Q 041470 132 GGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSN----NVHIDDLTFEDSPQMHI-AFERSTNIEATNLTIMAPGNSP 206 (394)
Q Consensus 132 ~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~----nv~I~~vti~ns~~~~i-~~~~~~nv~i~~~~i~~~~~~~ 206 (394)
.++.+.|- +| +..++| .+.+.+-. +..|++.++..+-.|.- -++-+.+-+|+||-+..
T Consensus 329 q~~~~~Gi-TI--~~pP~~---------Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dcF~h~----- 391 (582)
T PF03718_consen 329 QTLTCEGI-TI--NDPPFH---------SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPNSTIRDCFIHV----- 391 (582)
T ss_dssp EEEEEES--EE--E--SS----------SEEEESSSGGGEEEEEEEEEEE---CTT----B--TT-EEEEEEEEE-----
T ss_pred ceEEEEee-Ee--cCCCcc---------eEEecCCccccccceeeceeeeeeEEeccCCccccCCCeeeeeEEEe-----
Confidence 67888873 22 334555 45555433 47899999998766532 23446888999999998
Q ss_pred CCCeeeeeCcccEEEEeEEEecCC--ceEEeCC---CCeeEEEEeeEecC----------CceeEEeecCCc-----CC-
Q 041470 207 NTDGIHIQHSSNVSIAHSIISTGD--DCVSIGD---GSSHLNITNIFCGP----------GHGISIGSLGMK-----GR- 265 (394)
Q Consensus 207 n~DGi~~~~s~~v~I~n~~i~~gD--D~iai~s---~~~nV~i~n~~~~~----------~~gi~iGs~g~~-----~~- 265 (394)
|.|+|.+.. +++.|++|.+...+ -.|-++- ..+||.|+|+.+-. ..+|- ++.--+ +.
T Consensus 392 nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~-~ss~~y~~~~s~~~ 469 (582)
T PF03718_consen 392 NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAIL-GSSPFYDDMASTKT 469 (582)
T ss_dssp SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-ECE-EE--BTTS-SSS--
T ss_pred cCchhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCceeE-ecccccccccCCCC
Confidence 678898876 79999999997532 2333332 25799999997621 12332 222112 11
Q ss_pred ---CCCEEEEEEEeEEEeCCc-eeEEEE
Q 041470 266 ---NEKVEFVHVNNVSFTETQ-NGVRIK 289 (394)
Q Consensus 266 ---~~~v~nI~i~n~~~~~~~-~gi~ik 289 (394)
...+++++|+|+++++.. ..+||.
T Consensus 470 adp~~ti~~~~~~nv~~EG~~~~l~ri~ 497 (582)
T PF03718_consen 470 ADPSTTIRNMTFSNVRCEGMCPCLFRIY 497 (582)
T ss_dssp BEEEEEEEEEEEEEEEEECCE-ECEEE-
T ss_pred CCcccceeeEEEEeEEEecccceeEEEe
Confidence 245689999999999854 456663
No 30
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.36 E-value=9.5e-06 Score=69.47 Aligned_cols=138 Identities=25% Similarity=0.346 Sum_probs=92.0
Q ss_pred EEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCceeEEeceecEEEEeEEEECCCCCC
Q 041470 127 QFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSP 206 (394)
Q Consensus 127 ~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~ 206 (394)
.+.+..+++|.+ -.|...+ ...+.+..+..++|++.++.+ ...++.+....+++++++++....
T Consensus 4 ~i~~~~~~~i~~-~~i~~~~-----------~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~--- 67 (158)
T PF13229_consen 4 SINNGSNVTIRN-CTISNNG-----------GDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG--- 67 (158)
T ss_dssp EETTCEC-EEES-EEEESSS-----------SECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S---
T ss_pred EEECCcCeEEee-eEEEeCC-----------CeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc---
Confidence 444556666666 3443321 237888888889999999999 778899999999999999999842
Q ss_pred CCCeeeeeCcccEEEEeEEEecC-CceEEeCCCCeeEEEEeeEecCC--ceeEEeecCCcCCCCCEEEEEEEeEEEeCCc
Q 041470 207 NTDGIHIQHSSNVSIAHSIISTG-DDCVSIGDGSSHLNITNIFCGPG--HGISIGSLGMKGRNEKVEFVHVNNVSFTETQ 283 (394)
Q Consensus 207 n~DGi~~~~s~~v~I~n~~i~~g-DD~iai~s~~~nV~i~n~~~~~~--~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~ 283 (394)
.|+.+..+..++|++|.+... +.+|.+....++++|++|++... .|+.+... .-.+++|++|++.+..
T Consensus 68 --~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n~i~~~~ 138 (158)
T PF13229_consen 68 --SGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENNTISNNG 138 (158)
T ss_dssp --EEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECEEEECES
T ss_pred --ceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEEEEEeCc
Confidence 789999999999999999864 55888874257899999999863 67777543 1246889999999865
Q ss_pred -eeEEEE
Q 041470 284 -NGVRIK 289 (394)
Q Consensus 284 -~gi~ik 289 (394)
+||++.
T Consensus 139 ~~gi~~~ 145 (158)
T PF13229_consen 139 GNGIYLI 145 (158)
T ss_dssp SEEEE-T
T ss_pred ceeEEEE
Confidence 677663
No 31
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.33 E-value=1.1e-05 Score=80.01 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=82.6
Q ss_pred eEEEecccceEEeeeeEeCCC------CceeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEe-cCCce
Q 041470 160 GLVVANSNNVHIDDLTFEDSP------QMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIIS-TGDDC 232 (394)
Q Consensus 160 ~i~~~~~~nv~I~~vti~ns~------~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~-~gDD~ 232 (394)
++.-...++++|++++|+++. ...|.+..|++++|+++++.... .-||.+..|+ ..|.++.+. +.+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 565678899999999999864 34688999999999999999852 2477777776 555554444 34444
Q ss_pred EEeCCCCeeEEEEeeEecCC--ceeEEeec------------------------CCcCC---CCCEEEEEEEeEEEeCCc
Q 041470 233 VSIGDGSSHLNITNIFCGPG--HGISIGSL------------------------GMKGR---NEKVEFVHVNNVSFTETQ 283 (394)
Q Consensus 233 iai~s~~~nV~i~n~~~~~~--~gi~iGs~------------------------g~~~~---~~~v~nI~i~n~~~~~~~ 283 (394)
|-++. +++..|+++++... .||.|--. +++|. --...+++|+++++.+++
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 44444 55666666666543 23433211 22221 123356778888888887
Q ss_pred -eeEEEEEe
Q 041470 284 -NGVRIKTW 291 (394)
Q Consensus 284 -~gi~ik~~ 291 (394)
.|||+.+.
T Consensus 262 ~dgI~~nss 270 (455)
T TIGR03808 262 YSAVRGNSA 270 (455)
T ss_pred cceEEEEcc
Confidence 78887765
No 32
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.23 E-value=1.3e-05 Score=72.49 Aligned_cols=76 Identities=30% Similarity=0.375 Sum_probs=55.0
Q ss_pred CCCCeeeeeCcccEEEEeEEEecC---------CceEEeCCCCeeEEEEeeEecCC-ceeEEeecCCcCCCCCEEEEEEE
Q 041470 206 PNTDGIHIQHSSNVSIAHSIISTG---------DDCVSIGDGSSHLNITNIFCGPG-HGISIGSLGMKGRNEKVEFVHVN 275 (394)
Q Consensus 206 ~n~DGi~~~~s~~v~I~n~~i~~g---------DD~iai~s~~~nV~i~n~~~~~~-~gi~iGs~g~~~~~~~v~nI~i~ 275 (394)
...|+|.+..+++|+|++|.+..+ |..+.++.++.+|+|++|.|... .+.-+|+......... .+|++.
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~h 151 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFH 151 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEE
T ss_pred cCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEEEE
Confidence 567999999999999999999855 66689988899999999999864 3466776422212334 899999
Q ss_pred eEEEeCC
Q 041470 276 NVSFTET 282 (394)
Q Consensus 276 n~~~~~~ 282 (394)
.+.+.++
T Consensus 152 hN~f~~~ 158 (200)
T PF00544_consen 152 HNYFANT 158 (200)
T ss_dssp S-EEEEE
T ss_pred eEEECch
Confidence 9999765
No 33
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.20 E-value=0.0001 Score=68.35 Aligned_cols=169 Identities=20% Similarity=0.228 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhhccCCCCCEEEecCCCeeEee-----cceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccE
Q 041470 52 TQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQ-----PLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWI 126 (394)
Q Consensus 52 t~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~-----~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i 126 (394)
-+-|++|++.|.+ |.+|++-+| +|.-. ||.++ ..++|..+..-++ .
T Consensus 15 ~~Ti~~A~~~a~~----g~~i~l~~G-tY~~~~ge~fPi~i~------~gVtl~G~~~~kG---------------~--- 65 (246)
T PF07602_consen 15 FKTITKALQAAQP----GDTIQLAPG-TYSEATGETFPIIIK------PGVTLIGNESNKG---------------Q--- 65 (246)
T ss_pred HHHHHHHHHhCCC----CCEEEECCc-eeccccCCcccEEec------CCeEEeecccCCC---------------c---
Confidence 5679999985443 789999999 99754 45554 2566644321111 0
Q ss_pred EEeeeeceEEEece---EEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCC---CCceeEEeceecEEEEeEEEE
Q 041470 127 QFKKFGGLFIRGVG---SINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDS---PQMHIAFERSTNIEATNLTIM 200 (394)
Q Consensus 127 ~~~~~~nv~I~G~G---~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns---~~~~i~~~~~~nv~i~~~~i~ 200 (394)
.++.+.|.+ +|+|.+...- -..+.+....+.+|+++++.|+ ...+++++.+ +.+|+|++|.
T Consensus 66 -----~~il~~g~~~~~~I~g~~~~~~-------~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~ 132 (246)
T PF07602_consen 66 -----IDILITGGGTGPTISGGGPDLS-------GQNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFT 132 (246)
T ss_pred -----ceEEecCCceEEeEeccCcccc-------ceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEE
Confidence 122222211 2333332110 1244555567788888888887 2335666554 6777777776
Q ss_pred CCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecC-CceeEEeecCCcCCCCCEEEEEEEeEEE
Q 041470 201 APGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGP-GHGISIGSLGMKGRNEKVEFVHVNNVSF 279 (394)
Q Consensus 201 ~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~-~~gi~iGs~g~~~~~~~v~nI~i~n~~~ 279 (394)
.. ..+||.+... ..+....++.|+++.+.. ..||++-.. ...++ ..|+|+.+
T Consensus 133 ~~----~~~GI~v~g~-----------------~~~~~i~~~vI~GN~~~~~~~Gi~i~~~-----~~~~~-n~I~NN~I 185 (246)
T PF07602_consen 133 NN----GREGIFVTGT-----------------SANPGINGNVISGNSIYFNKTGISISDN-----AAPVE-NKIENNII 185 (246)
T ss_pred CC----ccccEEEEee-----------------ecCCcccceEeecceEEecCcCeEEEcc-----cCCcc-ceeeccEE
Confidence 63 2345443221 112234566677776664 468887432 12233 35688888
Q ss_pred eCCceeEEEE
Q 041470 280 TETQNGVRIK 289 (394)
Q Consensus 280 ~~~~~gi~ik 289 (394)
.+...||.+.
T Consensus 186 ~~N~~Gi~~~ 195 (246)
T PF07602_consen 186 ENNNIGIVAI 195 (246)
T ss_pred EeCCcCeEee
Confidence 8766676654
No 34
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.18 E-value=0.00026 Score=70.19 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHhhccCCCCCEEEecCCCeeE
Q 041470 51 DTQAFKDAWKATCKSSSSSPTMHVPHDKSFK 81 (394)
Q Consensus 51 dt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~ 81 (394)
+.++||+||++|. .|.+|+++.| +|.
T Consensus 3 s~~~lq~Ai~~a~----pGD~I~L~~G-ty~ 28 (425)
T PF14592_consen 3 SVAELQSAIDNAK----PGDTIVLADG-TYK 28 (425)
T ss_dssp SHHHHHHHHHH------TT-EEEE-SE-EEE
T ss_pred CHHHHHHHHHhCC----CCCEEEECCc-eee
Confidence 5689999999544 3899999999 997
No 35
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.01 E-value=0.00013 Score=67.62 Aligned_cols=116 Identities=27% Similarity=0.271 Sum_probs=97.1
Q ss_pred eEEEecccceEEeeeeEeCCCCceeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCC
Q 041470 160 GLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGS 239 (394)
Q Consensus 160 ~i~~~~~~nv~I~~vti~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~ 239 (394)
.+.+..+++..|++.++.+.. .++.+..+.+++|++.++.. +..||++..+++++|+++.+.....+|.+....
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s~ 88 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMGSS 88 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEcCC
Confidence 577788899999999998764 56789999999999999998 378999999999999999999877999998844
Q ss_pred eeEEEEeeEecCC-ceeEEeecCCcCCCCCEEEEEEEeEEEeCCceeEEEEEe
Q 041470 240 SHLNITNIFCGPG-HGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTW 291 (394)
Q Consensus 240 ~nV~i~n~~~~~~-~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~~gi~ik~~ 291 (394)
+.+|+++++... .||.+.. ..+.+|+++++.+...||++...
T Consensus 89 -~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s 131 (236)
T PF05048_consen 89 -NNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS 131 (236)
T ss_pred -CcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC
Confidence 559999999764 5777632 23578999999988899998764
No 36
>PLN02176 putative pectinesterase
Probab=98.00 E-value=0.0018 Score=62.92 Aligned_cols=177 Identities=13% Similarity=0.107 Sum_probs=100.7
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEe
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFK 129 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~ 129 (394)
-|-.-||+||+++....+..-+|+|.+| +|.-. +.+... |. +|+|..++. ....|...
T Consensus 49 Gdf~TIq~AIdavP~~~~~~~~I~Ik~G-vY~Ek-V~Ip~~--k~-~vtl~G~g~-----------------~~TiIt~~ 106 (340)
T PLN02176 49 RYFKTVQSAIDSIPLQNQNWIRILIQNG-IYREK-VTIPKE--KG-YIYMQGKGI-----------------EKTIIAYG 106 (340)
T ss_pred CCccCHHHHHhhchhcCCceEEEEECCc-EEEEE-EEECCC--Cc-cEEEEEcCC-----------------CceEEEEe
Confidence 3577899999965443212246889999 99743 223211 22 677766540 00111111
Q ss_pred eeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC----------ceeEE-eceecEEEEeEE
Q 041470 130 KFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ----------MHIAF-ERSTNIEATNLT 198 (394)
Q Consensus 130 ~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~----------~~i~~-~~~~nv~i~~~~ 198 (394)
+ +. ++ ++ ...+. ..++++..+||+|+|... ..+.+ ...+...+.+|+
T Consensus 107 ~--~~-----~t-~~-------------saT~~-v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~ 164 (340)
T PLN02176 107 D--HQ-----AT-DT-------------SATFT-SYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSS 164 (340)
T ss_pred C--Cc-----cc-cc-------------ceEEE-EECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccE
Confidence 0 00 00 00 01222 357889999999998732 12222 347889999999
Q ss_pred EECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC---------ce-eEEeecCCcCCCCC
Q 041470 199 IMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG---------HG-ISIGSLGMKGRNEK 268 (394)
Q Consensus 199 i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~---------~g-i~iGs~g~~~~~~~ 268 (394)
+.... |-+... ...-..++|+|...=|-|. |.....++||++..- .| |.-- ++. ....
T Consensus 165 f~G~Q-----DTLy~~-~gRqyf~~CyIeG~VDFIF---G~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~--~r~-~~~~ 232 (340)
T PLN02176 165 FDGFQ-----DTLFDG-KGRHYYKRCVISGGIDFIF---GYAQSIFEGCTLKLTLGIYPPNEPYGTITAQ--GRP-SPSD 232 (340)
T ss_pred Eeccc-----ceeEeC-CcCEEEEecEEEecccEEe---cCceEEEeccEEEEecccCCCCCCcEEEEeC--CCC-CCCC
Confidence 99843 334333 3457889999987656554 335789999998631 23 2221 110 1223
Q ss_pred EEEEEEEeEEEeCC
Q 041470 269 VEFVHVNNVSFTET 282 (394)
Q Consensus 269 v~nI~i~n~~~~~~ 282 (394)
-....|.||++...
T Consensus 233 ~~GfvF~~C~itg~ 246 (340)
T PLN02176 233 KGGFVFKDCTVTGV 246 (340)
T ss_pred CcEEEEECCEEccC
Confidence 34688999999864
No 37
>PLN02480 Probable pectinesterase
Probab=97.91 E-value=0.0015 Score=63.73 Aligned_cols=107 Identities=7% Similarity=-0.043 Sum_probs=68.8
Q ss_pred EecccceEEeeeeEeCCCC---------ceeEE-eceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCce
Q 041470 163 VANSNNVHIDDLTFEDSPQ---------MHIAF-ERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDC 232 (394)
Q Consensus 163 ~~~~~nv~I~~vti~ns~~---------~~i~~-~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~ 232 (394)
....++++++||+|+|+.. ..+.+ ..++++.|+||++.... |-+... ...-..++|+|...=|-
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~Q-----DTLy~~-~gR~yf~~C~IeG~VDF 201 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTH-----NTLFDY-KGRHYYHSCYIQGSIDF 201 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEeccc-----ceeEeC-CCCEEEEeCEEEeeeeE
Confidence 3356889999999999831 33444 46889999999998843 434322 24578899999865454
Q ss_pred EEeCCCCeeEEEEeeEecCC-------ce-eEEeecCCcCCCCCEEEEEEEeEEEeCC
Q 041470 233 VSIGDGSSHLNITNIFCGPG-------HG-ISIGSLGMKGRNEKVEFVHVNNVSFTET 282 (394)
Q Consensus 233 iai~s~~~nV~i~n~~~~~~-------~g-i~iGs~g~~~~~~~v~nI~i~n~~~~~~ 282 (394)
|- |.-...++||++..- .| |.--+. ....-....|.||++...
T Consensus 202 IF---G~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r----~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 202 IF---GRGRSIFHNCEIFVIADRRVKIYGSITAHNR----ESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred Ec---cceeEEEEccEEEEecCCCCCCceEEEcCCC----CCCCCCEEEEECCEEccc
Confidence 32 345789999998642 23 222111 112334678999999764
No 38
>PLN02682 pectinesterase family protein
Probab=97.79 E-value=0.0025 Score=62.51 Aligned_cols=187 Identities=12% Similarity=0.097 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEe
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFK 129 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~ 129 (394)
-|-.-||+||+++....+..-+|+|.+| +|.-. +.+... |. +|+|..++. + ...|...
T Consensus 80 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G-~Y~Ek-V~Ip~~--k~-~Itl~G~g~-----~------------~TiIt~~ 137 (369)
T PLN02682 80 GDFTTIQAAIDSLPVINLVRVVIKVNAG-TYREK-VNIPPL--KA-YITLEGAGA-----D------------KTIIQWG 137 (369)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCc-eeeEE-EEEecc--Cc-eEEEEecCC-----C------------ccEEEec
Confidence 4567899999965432212357999999 99743 333211 23 677766541 0 0111111
Q ss_pred eeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCc---------eeEE-eceecEEEEeEEE
Q 041470 130 KFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQM---------HIAF-ERSTNIEATNLTI 199 (394)
Q Consensus 130 ~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~---------~i~~-~~~~nv~i~~~~i 199 (394)
...+ .....|..+ ... .........+++..+||+|+|+..+ .+.+ ...+...+.+|++
T Consensus 138 ~~a~-------~~~~~g~~~-gT~----~SAT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f 205 (369)
T PLN02682 138 DTAD-------TPGPGGRPL-GTY----GSATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKF 205 (369)
T ss_pred cccC-------ccCCCCCcc-ccc----cceEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceE
Confidence 1000 000011111 000 1133345678999999999997421 2333 3578999999999
Q ss_pred ECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecC---Cce-eEEeecCCcCCCCCEEEEEEE
Q 041470 200 MAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGP---GHG-ISIGSLGMKGRNEKVEFVHVN 275 (394)
Q Consensus 200 ~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~---~~g-i~iGs~g~~~~~~~v~nI~i~ 275 (394)
.... |-+... ...-..++|+|...=|-|. |.-...+++|++.. ..| |.-- ++. ....-....|.
T Consensus 206 ~G~Q-----DTLy~~-~gRqyf~~C~IeG~VDFIF---G~g~a~Fe~C~I~s~~~~~G~ITA~--~r~-~~~~~~GfvF~ 273 (369)
T PLN02682 206 LGAQ-----DTLYDH-LGRHYFKDCYIEGSVDFIF---GNGLSLYEGCHLHAIARNFGALTAQ--KRQ-SVLEDTGFSFV 273 (369)
T ss_pred eccc-----cceEEC-CCCEEEEeeEEcccccEEe---cCceEEEEccEEEEecCCCeEEecC--CCC-CCCCCceEEEE
Confidence 9843 333333 2457889999986656543 34588999999863 123 2221 110 11233578899
Q ss_pred eEEEeCC
Q 041470 276 NVSFTET 282 (394)
Q Consensus 276 n~~~~~~ 282 (394)
||++...
T Consensus 274 ~C~itg~ 280 (369)
T PLN02682 274 NCKVTGS 280 (369)
T ss_pred eeEecCC
Confidence 9999774
No 39
>smart00656 Amb_all Amb_all domain.
Probab=97.76 E-value=0.0016 Score=58.47 Aligned_cols=119 Identities=22% Similarity=0.307 Sum_probs=84.8
Q ss_pred eEEEecccceEEeeeeEeCCCC------ceeEEeceecEEEEeEEEECCCC----CCCCCee-eee-CcccEEEEeEEEe
Q 041470 160 GLVVANSNNVHIDDLTFEDSPQ------MHIAFERSTNIEATNLTIMAPGN----SPNTDGI-HIQ-HSSNVSIAHSIIS 227 (394)
Q Consensus 160 ~i~~~~~~nv~I~~vti~ns~~------~~i~~~~~~nv~i~~~~i~~~~~----~~n~DGi-~~~-~s~~v~I~n~~i~ 227 (394)
.+.+..++||.|++|++++... .+|.+..+++|.|++|++..... ....||. ++. .+.+++|.+|.+.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 4666678999999999998643 47888999999999999987410 1124564 444 4799999999998
Q ss_pred cCCceEEeCCCCe-------eEEEEeeEecCC--ceeEEeecCCcCCCCCEEEEEEEeEEEeCCc-eeEEE
Q 041470 228 TGDDCVSIGDGSS-------HLNITNIFCGPG--HGISIGSLGMKGRNEKVEFVHVNNVSFTETQ-NGVRI 288 (394)
Q Consensus 228 ~gDD~iai~s~~~-------nV~i~n~~~~~~--~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~-~gi~i 288 (394)
..+-+.-++++.+ +|++.+|.+... +.=.+. .+ .+++-|+.+.+.. +++.+
T Consensus 113 ~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r-------~g---~~hv~NN~~~n~~~~~~~~ 173 (190)
T smart00656 113 NHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR-------FG---YVHVYNNYYTGWTSYAIGG 173 (190)
T ss_pred cCCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc-------CC---EEEEEeeEEeCcccEeEec
Confidence 7666777776432 699999999753 222221 11 5889999988864 44433
No 40
>PLN02665 pectinesterase family protein
Probab=97.76 E-value=0.0052 Score=60.35 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=72.3
Q ss_pred EEEecccceEEeeeeEeCCCC---------ceeEE-eceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCC
Q 041470 161 LVVANSNNVHIDDLTFEDSPQ---------MHIAF-ERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGD 230 (394)
Q Consensus 161 i~~~~~~nv~I~~vti~ns~~---------~~i~~-~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gD 230 (394)
-....++++..+||+|+|+.. ..+.+ ...+...+.+|++.... |-+.... ..-..++|+|...=
T Consensus 148 Tv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~Q-----DTL~~~~-gr~yf~~CyIeG~V 221 (366)
T PLN02665 148 TLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQ-----DTLCDDK-GRHFFKDCYIEGTV 221 (366)
T ss_pred EEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceecccc-----ceeEeCC-CCEEEEeeEEeecc
Confidence 344567899999999998742 22222 24688999999999843 3343333 45778999998765
Q ss_pred ceEEeCCCCeeEEEEeeEecC-Cc---e-eEEeecCCcCCCCCEEEEEEEeEEEeCCceeEEE
Q 041470 231 DCVSIGDGSSHLNITNIFCGP-GH---G-ISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRI 288 (394)
Q Consensus 231 D~iai~s~~~nV~i~n~~~~~-~~---g-i~iGs~g~~~~~~~v~nI~i~n~~~~~~~~gi~i 288 (394)
|-|. |.-...+++|++.. .. | |.- .++. ....-....|.||++.+....+++
T Consensus 222 DFIF---G~g~a~fe~C~i~s~~~~~~g~ITA--~~r~-~~~~~~GfvF~~C~itg~~~~~yL 278 (366)
T PLN02665 222 DFIF---GSGKSLYLNTELHVVGDGGLRVITA--QARN-SEAEDSGFSFVHCKVTGTGTGAYL 278 (366)
T ss_pred ceec---cccceeeEccEEEEecCCCcEEEEc--CCCC-CCCCCceEEEEeeEEecCCCceee
Confidence 6554 33477999999864 12 2 222 1111 112334678999999886433443
No 41
>PLN02773 pectinesterase
Probab=97.72 E-value=0.0042 Score=59.92 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=71.6
Q ss_pred EEecccceEEeeeeEeCCCCc----eeEE-eceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeC
Q 041470 162 VVANSNNVHIDDLTFEDSPQM----HIAF-ERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIG 236 (394)
Q Consensus 162 ~~~~~~nv~I~~vti~ns~~~----~i~~-~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~ 236 (394)
....++++..++|+|+|.... .+.+ ...+.+.+.+|++.... |-+.... .....++|+|...=|-|.
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~Q-----DTL~~~~-gr~yf~~c~IeG~VDFIF-- 168 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQ-----DTLYLHY-GKQYLRDCYIEGSVDFIF-- 168 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeeccc-----ceeEeCC-CCEEEEeeEEeecccEEe--
Confidence 444688999999999998432 2222 24789999999999843 4444333 457889999986656554
Q ss_pred CCCeeEEEEeeEecCC-ce-eEEeecCCcCCCCCEEEEEEEeEEEeCCc
Q 041470 237 DGSSHLNITNIFCGPG-HG-ISIGSLGMKGRNEKVEFVHVNNVSFTETQ 283 (394)
Q Consensus 237 s~~~nV~i~n~~~~~~-~g-i~iGs~g~~~~~~~v~nI~i~n~~~~~~~ 283 (394)
|.-...+++|++..- .| |.--+. .....-....|.||++....
T Consensus 169 -G~g~a~Fe~c~i~s~~~g~ITA~~r---~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 169 -GNSTALLEHCHIHCKSAGFITAQSR---KSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred -eccEEEEEeeEEEEccCcEEECCCC---CCCCCCceEEEEccEEecCC
Confidence 335789999999642 34 222110 01122346789999998753
No 42
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.67 E-value=0.0067 Score=60.43 Aligned_cols=206 Identities=14% Similarity=0.178 Sum_probs=112.4
Q ss_pred CCCCCcchHHHHHHHHHHhhccC-CCCCEEEecCCCeeEeecceeccCccccceEEEEEce------EEEccC----CCC
Q 041470 44 AGDGHTDDTQAFKDAWKATCKSS-SSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDG------HLVAPR----DPH 112 (394)
Q Consensus 44 ~gdg~tddt~Aiq~Ai~~a~~~~-~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g------~l~~~~----~~~ 112 (394)
.+||. -|-.-||+||+++.... +..-+|+|-+| +|.-. +.+... |. +|+|..+| +|.... ...
T Consensus 87 a~dGs-Gdf~TIQaAIdAa~~~~~~~r~~I~Ik~G-vY~Ek-V~Ip~~--kp-~ItL~G~G~~~~~TvIt~~~~~~~~~~ 160 (422)
T PRK10531 87 AGTQG-VTHTTVQAAVDAAIAKRTNKRQYIAVMPG-TYQGT-VYVPAA--AP-PITLYGTGEKPIDVKIGLALDGEMSPA 160 (422)
T ss_pred CCCCC-CCccCHHHHHhhccccCCCceEEEEEeCc-eeEEE-EEeCCC--Cc-eEEEEecCCCCCceEEEecCccccccc
Confidence 45553 35678999999654321 12357899999 99743 333221 23 78887643 233220 001
Q ss_pred CCcCC---CC---CCccccEEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCc----
Q 041470 113 AWNTC---DG---SKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQM---- 182 (394)
Q Consensus 113 ~~~~~---~~---~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~---- 182 (394)
.|... .+ .+...|..+.++.+-.-.+.|+ + -........+++..++|+|+|+...
T Consensus 161 ~~~~~~~~~g~~~~~~p~~y~~d~~~~~~~~~~gT-------~--------~SATv~v~ad~F~a~NLTf~Ntag~~~~~ 225 (422)
T PRK10531 161 DWRANVNPRGKYMPGKPAWYMYDSCQSKRAATIGT-------L--------CSAVFWSQNNGLQLQNLTIENTLGDSVDA 225 (422)
T ss_pred cccccccccccccccccccccccccccccCCCcCc-------e--------eeEEEEEECCCEEEEeeEEEeCCCCCCCC
Confidence 11100 00 0112333333221100000011 1 1144456789999999999998532
Q ss_pred ----eeEE-eceecEEEEeEEEECCCCCCCCCeeeee-----------CcccEEEEeEEEecCCceEEeCCCCeeEEEEe
Q 041470 183 ----HIAF-ERSTNIEATNLTIMAPGNSPNTDGIHIQ-----------HSSNVSIAHSIISTGDDCVSIGDGSSHLNITN 246 (394)
Q Consensus 183 ----~i~~-~~~~nv~i~~~~i~~~~~~~n~DGi~~~-----------~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n 246 (394)
.+.+ ...+.+.+.+|+|....| -+... .......++|+|...=|-|. |.-..+++|
T Consensus 226 ~~~QAVALrv~GDra~fy~C~flG~QD-----TLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VDFIF---G~g~AvFen 297 (422)
T PRK10531 226 GNHPAVALRTDGDKVQIENVNILGRQD-----TFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVDFVF---GRGAVVFDN 297 (422)
T ss_pred CcceeEEEEEcCCcEEEEeeEEecccc-----eeeeccccccccccccccccEEEEeCEEeecccEEc---cCceEEEEc
Confidence 2222 357899999999998543 23321 12357889999986556544 345788999
Q ss_pred eEecCC------ce-eEEeecCCcCCCCCEEEEEEEeEEEeCC
Q 041470 247 IFCGPG------HG-ISIGSLGMKGRNEKVEFVHVNNVSFTET 282 (394)
Q Consensus 247 ~~~~~~------~g-i~iGs~g~~~~~~~v~nI~i~n~~~~~~ 282 (394)
|++..- .| |.-.+. ....-..+.|.||+|...
T Consensus 298 C~I~s~~~~~~~~g~ITA~~t----~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 298 TEFRVVNSRTQQEAYVFAPAT----LPNIYYGFLAINSRFNAS 336 (422)
T ss_pred CEEEEecCCCCCceEEEecCC----CCCCCCEEEEECCEEecC
Confidence 998641 23 211111 123345688999999874
No 43
>PLN02497 probable pectinesterase
Probab=97.66 E-value=0.016 Score=56.20 Aligned_cols=107 Identities=12% Similarity=0.044 Sum_probs=67.3
Q ss_pred ecccceEEeeeeEeCCCCc-----------eeEE-eceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCc
Q 041470 164 ANSNNVHIDDLTFEDSPQM-----------HIAF-ERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDD 231 (394)
Q Consensus 164 ~~~~nv~I~~vti~ns~~~-----------~i~~-~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD 231 (394)
..++++..+||+|+|+..+ .+.+ ...+...+.+|++....| -+... ...-..++|+|...=|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QD-----TLy~~-~gRqyf~~C~IeG~VD 185 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQD-----TLWDS-DGRHYFKRCTIQGAVD 185 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEecccc-----ceeeC-CCcEEEEeCEEEeccc
Confidence 4578899999999987431 2222 357889999999998433 33322 3457889999986555
Q ss_pred eEEeCCCCeeEEEEeeEecCC--------ce-eEEeecCCcCCCCCEEEEEEEeEEEeCC
Q 041470 232 CVSIGDGSSHLNITNIFCGPG--------HG-ISIGSLGMKGRNEKVEFVHVNNVSFTET 282 (394)
Q Consensus 232 ~iai~s~~~nV~i~n~~~~~~--------~g-i~iGs~g~~~~~~~v~nI~i~n~~~~~~ 282 (394)
-|- |.....++||.+..- .| |.--+ +. .........|.||++...
T Consensus 186 FIF---G~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~--r~-~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 186 FIF---GSGQSIYESCVIQVLGGQLEPGLAGFITAQG--RT-NPYDANGFVFKNCLVYGT 239 (331)
T ss_pred EEc---cCceEEEEccEEEEecCcCCCCCceEEEecC--CC-CCCCCceEEEEccEEccC
Confidence 443 335788999988631 13 22211 10 123334678999999864
No 44
>PLN02634 probable pectinesterase
Probab=97.57 E-value=0.016 Score=56.63 Aligned_cols=187 Identities=17% Similarity=0.161 Sum_probs=102.1
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEe
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFK 129 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~ 129 (394)
-|=.-||+||+++....+..-+|+|-+| +|.-. +.+... |. +++|..+|. ....|...
T Consensus 66 Gdf~TIQaAIda~P~~~~~r~vI~Ik~G-vY~Ek-V~Ip~~--k~-~ItL~G~g~-----------------~~TiIt~~ 123 (359)
T PLN02634 66 GDFRSVQDAVDSVPKNNTMSVTIKINAG-FYREK-VVVPAT--KP-YITFQGAGR-----------------DVTAIEWH 123 (359)
T ss_pred CCccCHHHHHhhCcccCCccEEEEEeCc-eEEEE-EEEcCC--CC-eEEEEecCC-----------------CceEEEec
Confidence 3577899999965442212347999999 99743 223211 22 677766541 00111111
Q ss_pred eeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC---------ceeEE-eceecEEEEeEEE
Q 041470 130 KFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ---------MHIAF-ERSTNIEATNLTI 199 (394)
Q Consensus 130 ~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~---------~~i~~-~~~~nv~i~~~~i 199 (394)
.... -.| .+|..+-. . ...-.....+++..+||+|+|+.. ..+.+ ...+...+.+|++
T Consensus 124 ~~a~--~~~-----~~g~~~~T-~----~SaTv~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f 191 (359)
T PLN02634 124 DRAS--DRG-----ANGQQLRT-Y----QTASVTVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGF 191 (359)
T ss_pred cccc--ccC-----CCCccccc-c----cceEEEEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEE
Confidence 0000 000 01111100 0 012223356788999999998742 12222 2478899999999
Q ss_pred ECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC---ce-eEEeecCCcCCCCCEEEEEEE
Q 041470 200 MAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG---HG-ISIGSLGMKGRNEKVEFVHVN 275 (394)
Q Consensus 200 ~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~---~g-i~iGs~g~~~~~~~v~nI~i~ 275 (394)
.... |-+... ...-..++|+|...=|-|. |.-...++||++..- .| |.- .++. +...-....|.
T Consensus 192 ~G~Q-----DTL~~~-~gR~yf~~CyIeG~VDFIF---G~g~a~Fe~C~I~s~~~~~g~ITA--~~R~-~~~~~~GfvF~ 259 (359)
T PLN02634 192 YGAQ-----DTLCDD-AGRHYFKECYIEGSIDFIF---GNGRSMYKDCELHSIASRFGSIAA--HGRT-CPEEKTGFAFV 259 (359)
T ss_pred eccc-----ceeeeC-CCCEEEEeeEEcccccEEc---CCceEEEeccEEEEecCCCcEEEe--CCCC-CCCCCcEEEEE
Confidence 9843 333333 2457889999986656544 334778999998642 23 222 1111 12233578899
Q ss_pred eEEEeCC
Q 041470 276 NVSFTET 282 (394)
Q Consensus 276 n~~~~~~ 282 (394)
||++...
T Consensus 260 ~C~vtg~ 266 (359)
T PLN02634 260 GCRVTGT 266 (359)
T ss_pred cCEEcCC
Confidence 9999764
No 45
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.041 Score=52.61 Aligned_cols=120 Identities=14% Similarity=0.171 Sum_probs=83.3
Q ss_pred cccEEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCceeEEeceecEEEEeEEEECC
Q 041470 123 RQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAP 202 (394)
Q Consensus 123 ~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~~i~~~~~~nv~i~~~~i~~~ 202 (394)
...+.+. +.++.++| -++.+.|..-..- ....+.-...+.-.|+.-.+... .+++.+..+.++.|++.+|...
T Consensus 69 G~~vtv~-aP~~~v~G-l~vr~sg~~lp~m----~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~ 141 (408)
T COG3420 69 GSYVTVA-APDVIVEG-LTVRGSGRSLPAM----DAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGL 141 (408)
T ss_pred ccEEEEe-CCCceeee-EEEecCCCCcccc----cceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeec
Confidence 3445554 57788887 3444444322211 11233334556666766666644 4789999999999999999875
Q ss_pred CC---CCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEec
Q 041470 203 GN---SPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCG 250 (394)
Q Consensus 203 ~~---~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~ 250 (394)
.+ ....+||+++.+.+++|....+.-+.|||-... +++-.|+++.+.
T Consensus 142 ~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gnr~~ 191 (408)
T COG3420 142 ADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGNRFR 191 (408)
T ss_pred cccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cccceecccchh
Confidence 44 356899999999999999999999999999887 556666666554
No 46
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.47 E-value=0.01 Score=61.99 Aligned_cols=181 Identities=15% Similarity=0.162 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEee
Q 041470 51 DTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKK 130 (394)
Q Consensus 51 dt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~~ 130 (394)
|-.-||+||+++....+..-+|+|.+| +|.-..+.+... |. +++|..+|.
T Consensus 283 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~~v~i~~~--k~-ni~l~G~g~-------------------------- 332 (587)
T PLN02484 283 TFKTISEAIKKAPEHSSRRTIIYVKAG-RYEENNLKVGRK--KT-NLMFIGDGK-------------------------- 332 (587)
T ss_pred CcccHHHHHHhccccCCCcEEEEEeCC-EEEEEEEEECCC--Cc-eEEEEecCC--------------------------
Confidence 466799999965543223457899999 998643444322 23 677766541
Q ss_pred eeceEEEece-EEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC----ceeEE-eceecEEEEeEEEECCCC
Q 041470 131 FGGLFIRGVG-SINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ----MHIAF-ERSTNIEATNLTIMAPGN 204 (394)
Q Consensus 131 ~~nv~I~G~G-~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~----~~i~~-~~~~nv~i~~~~i~~~~~ 204 (394)
....|+|.- ..++.+ .+. ..-.....+++..+||+|+|... ..+.+ ...+...+.+|++....
T Consensus 333 -~~TiIt~~~~~~~~~~-t~~--------saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~Q- 401 (587)
T PLN02484 333 -GKTVITGGKSIFDNLT-TFH--------TASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQ- 401 (587)
T ss_pred -CCeEEecCCcccCCCc-ccc--------eEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccC-
Confidence 111111100 001000 111 12333456788899999998743 23333 25789999999999854
Q ss_pred CCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC------ce-eEEeecCCcCCCCCEEEEEEEeE
Q 041470 205 SPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG------HG-ISIGSLGMKGRNEKVEFVHVNNV 277 (394)
Q Consensus 205 ~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~------~g-i~iGs~g~~~~~~~v~nI~i~n~ 277 (394)
|-+.... ..-..++|+|...=|-|. |.....++||.+..- .| |.- .++. +...-..+.|.||
T Consensus 402 ----DTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~i~~~~~~~~~~~~ITA--q~r~-~~~~~~G~vf~~c 470 (587)
T PLN02484 402 ----DTLYVHS-NRQFFRECDIYGTVDFIF---GNAAVVLQNCSIYARKPMAQQKNTITA--QNRK-DPNQNTGISIHAC 470 (587)
T ss_pred ----cccccCC-CcEEEEecEEEeccceec---ccceeEEeccEEEEecCCCCCceEEEe--cCCC-CCCCCcEEEEEee
Confidence 3343333 456889999986545433 446889999998631 23 222 1111 2233457889999
Q ss_pred EEeCCc
Q 041470 278 SFTETQ 283 (394)
Q Consensus 278 ~~~~~~ 283 (394)
++....
T Consensus 471 ~i~~~~ 476 (587)
T PLN02484 471 RILAAS 476 (587)
T ss_pred EEecCC
Confidence 998643
No 47
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.46 E-value=0.0035 Score=56.77 Aligned_cols=116 Identities=21% Similarity=0.332 Sum_probs=74.4
Q ss_pred ecccceEEeeeeEeCC---------------CCceeEEeceecEEEEeEEEECCCCC---CCCCe-eeee-CcccEEEEe
Q 041470 164 ANSNNVHIDDLTFEDS---------------PQMHIAFERSTNIEATNLTIMAPGNS---PNTDG-IHIQ-HSSNVSIAH 223 (394)
Q Consensus 164 ~~~~nv~I~~vti~ns---------------~~~~i~~~~~~nv~i~~~~i~~~~~~---~n~DG-i~~~-~s~~v~I~n 223 (394)
..++||.|++|++++. ....+.+..+++|.|++|++...... ...|| +++. .+.+|+|.+
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 4899999999999982 33468899999999999999975211 11455 6775 489999999
Q ss_pred EEEecCCceEEeCCC-------CeeEEEEeeEecCCce--eEEeecCCcCCCCCEEEEEEEeEEEeC-CceeEEEE
Q 041470 224 SIISTGDDCVSIGDG-------SSHLNITNIFCGPGHG--ISIGSLGMKGRNEKVEFVHVNNVSFTE-TQNGVRIK 289 (394)
Q Consensus 224 ~~i~~gDD~iai~s~-------~~nV~i~n~~~~~~~g--i~iGs~g~~~~~~~v~nI~i~n~~~~~-~~~gi~ik 289 (394)
|.|...+.+..+++. ..+|++.+|.+..... =.+ .. -.+++-|+.+.+ ..+++...
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~-------r~---G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRV-------RF---GYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEE-------CS---CEEEEES-EEEEECSESEEEE
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCcc-------cc---cEEEEEEeeeECCCCEEEEcc
Confidence 999875554444442 3689999999864311 111 11 147788887765 45565553
No 48
>PLN02197 pectinesterase
Probab=97.46 E-value=0.01 Score=61.78 Aligned_cols=186 Identities=15% Similarity=0.137 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEe
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFK 129 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~ 129 (394)
-|-.-||+||+++....+..-+|+|.+| +|.-. +.+... |. +++|..+|. ....|...
T Consensus 285 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~--k~-ni~l~G~g~-----------------~~TiIt~~ 342 (588)
T PLN02197 285 GQFKTISQAVMACPDKNPGRCIIHIKAG-IYNEQ-VTIPKK--KN-NIFMFGDGA-----------------RKTVISYN 342 (588)
T ss_pred CCcCCHHHHHHhccccCCceEEEEEeCc-eEEEE-EEccCC--Cc-eEEEEEcCC-----------------CCeEEEec
Confidence 3567899999965543212347899999 99743 222211 22 677766541 00111111
Q ss_pred eeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC----ceeEE-eceecEEEEeEEEECCCC
Q 041470 130 KFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ----MHIAF-ERSTNIEATNLTIMAPGN 204 (394)
Q Consensus 130 ~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~----~~i~~-~~~~nv~i~~~~i~~~~~ 204 (394)
.++.. .+|.+ .+. ..-.....+++..+|++|+|... ..+.+ ..++...+.+|+|...
T Consensus 343 --~~~~~-----~~g~~-T~~--------SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~Gy-- 404 (588)
T PLN02197 343 --RSVKL-----SPGTT-TSL--------SGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGY-- 404 (588)
T ss_pred --ccccc-----CCCCc-ccc--------eeEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEec--
Confidence 11100 01100 000 12233457889999999999743 23333 3578999999999984
Q ss_pred CCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC---ce--eEEeecCCcCC-CCCEEEEEEEeEE
Q 041470 205 SPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG---HG--ISIGSLGMKGR-NEKVEFVHVNNVS 278 (394)
Q Consensus 205 ~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~---~g--i~iGs~g~~~~-~~~v~nI~i~n~~ 278 (394)
.|-+.... ..-..++|+|...=|-|. |.....++||.+... .| -.|--.++. + ...-..+.|.||+
T Consensus 405 ---QDTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~i~~r~~~~~~~~~iTAqgr~-~~~~~~tG~vf~~C~ 476 (588)
T PLN02197 405 ---QDTLYVNN-GRQFYRNIVVSGTVDFIF---GKSATVIQNSLIVVRKGSKGQYNTVTADGNE-KGLAMKIGIVLQNCR 476 (588)
T ss_pred ---CcceEecC-CCEEEEeeEEEecccccc---cceeeeeecCEEEEecCCCCCceeEECCCCC-CCCCCCcEEEEEccE
Confidence 34454444 446889999996545433 345689999998531 11 122112211 1 1334578999999
Q ss_pred EeCCc
Q 041470 279 FTETQ 283 (394)
Q Consensus 279 ~~~~~ 283 (394)
+....
T Consensus 477 it~~~ 481 (588)
T PLN02197 477 IVPDK 481 (588)
T ss_pred EecCC
Confidence 98754
No 49
>PLN02304 probable pectinesterase
Probab=97.42 E-value=0.03 Score=55.16 Aligned_cols=181 Identities=15% Similarity=0.148 Sum_probs=100.7
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEe
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFK 129 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~ 129 (394)
-|=.-||+||+++....+..-+|+|.+| +|.-. +.+... |. +|+|..+|. + ...|...
T Consensus 85 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G-vY~Ek-V~Ip~~--K~-~Itl~G~g~-----~------------~TiIt~~ 142 (379)
T PLN02304 85 CNFTTVQSAVDAVGNFSQKRNVIWINSG-IYYEK-VTVPKT--KP-NITFQGQGF-----D------------STAIAWN 142 (379)
T ss_pred CCccCHHHHHhhCcccCCCcEEEEEeCe-EeEEE-EEECCC--CC-cEEEEecCC-----C------------CcEEEcc
Confidence 4467899999965442213457999999 99633 333211 23 777766541 0 0111111
Q ss_pred eeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC---------ceeEE-eceecEEEEeEEE
Q 041470 130 KFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ---------MHIAF-ERSTNIEATNLTI 199 (394)
Q Consensus 130 ~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~---------~~i~~-~~~~nv~i~~~~i 199 (394)
.... .+.|+ +. ........+++..+||+|+|+.. ..+.+ ...+...+.+|++
T Consensus 143 ~~a~---~~~gT-------~~--------SaTv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f 204 (379)
T PLN02304 143 DTAK---SANGT-------FY--------SASVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGF 204 (379)
T ss_pred Cccc---CCCCc-------cc--------eEEEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceE
Confidence 1000 00011 11 12333446888999999998742 12322 3578899999999
Q ss_pred ECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC-----------ce-eEEeecCCcCCCC
Q 041470 200 MAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG-----------HG-ISIGSLGMKGRNE 267 (394)
Q Consensus 200 ~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~-----------~g-i~iGs~g~~~~~~ 267 (394)
.... |-+.... ..-..++|+|...=|-|. |.-...++||.+..- .| |.-- ++ ....
T Consensus 205 ~G~Q-----DTLy~~~-gR~Yf~~CyIeG~VDFIF---G~g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~--~R-t~~~ 272 (379)
T PLN02304 205 FGAQ-----DTLHDDR-GRHYFKDCYIQGSIDFIF---GDARSLYENCRLISMANPVPPGSKSINGAVTAH--GR-TSKD 272 (379)
T ss_pred eccc-----ceeEeCC-CCEEEEeeEEcccccEEe---ccceEEEEccEEEEecCCcccccccCceEEEec--CC-CCCC
Confidence 9843 3343333 456789999986555443 335778999988631 12 2211 11 0123
Q ss_pred CEEEEEEEeEEEeCC
Q 041470 268 KVEFVHVNNVSFTET 282 (394)
Q Consensus 268 ~v~nI~i~n~~~~~~ 282 (394)
.-....|.||++...
T Consensus 273 ~~~GfvF~~C~itg~ 287 (379)
T PLN02304 273 ENTGFSFVNCTIGGT 287 (379)
T ss_pred CCceEEEECCEEccC
Confidence 335677999998764
No 50
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.41 E-value=0.021 Score=59.38 Aligned_cols=183 Identities=15% Similarity=0.138 Sum_probs=105.3
Q ss_pred chHHHHHHHHHHhhccC-CCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEE
Q 041470 50 DDTQAFKDAWKATCKSS-SSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQF 128 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~-~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~ 128 (394)
-|-.-||+||+++.... +..-+|+|.+| +|.-. +.+... | .+|+|..+|.
T Consensus 251 g~f~TIq~Av~a~p~~~~~~r~vI~vk~G-vY~E~-V~i~~~--k-~~v~l~G~g~------------------------ 301 (553)
T PLN02708 251 CCYKTVQEAVNAAPDNNGDRKFVIRIKEG-VYEET-VRVPLE--K-KNVVFLGDGM------------------------ 301 (553)
T ss_pred CCccCHHHHHHhhhhccCCccEEEEEeCc-eEEee-eeecCC--C-ccEEEEecCC------------------------
Confidence 35678999999655521 13458999999 99743 222211 1 2666666541
Q ss_pred eeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC----ceeEE-eceecEEEEeEEEECCC
Q 041470 129 KKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ----MHIAF-ERSTNIEATNLTIMAPG 203 (394)
Q Consensus 129 ~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~----~~i~~-~~~~nv~i~~~~i~~~~ 203 (394)
....|+|.--....| |... ...-.....+++..+|++|+|... ..+.+ ..++.+.+.+|+|....
T Consensus 302 ---~~TiIt~~~~~~~~g---~~T~----~saT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q 371 (553)
T PLN02708 302 ---GKTVITGSLNVGQPG---ISTY----NTATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQ 371 (553)
T ss_pred ---CceEEEecCccCCCC---cCcc----ceEEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecc
Confidence 111122210000000 0000 112333456899999999999853 23333 25789999999999843
Q ss_pred CCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecC---------C-ce-eEEeecCCcCCCCCEEEE
Q 041470 204 NSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGP---------G-HG-ISIGSLGMKGRNEKVEFV 272 (394)
Q Consensus 204 ~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~---------~-~g-i~iGs~g~~~~~~~v~nI 272 (394)
|-+...+ .....++|+|...=|-|. |...++++||.+.. + .+ |.- .++ .....-..+
T Consensus 372 -----DTLy~~~-~rq~y~~C~I~GtVDFIF---G~a~avfq~c~i~~~~~~~~~~~~~~~~iTA--~~r-~~~~~~~G~ 439 (553)
T PLN02708 372 -----DTLYAHS-LRQFYKSCRIQGNVDFIF---GNSAAVFQDCAILIAPRQLKPEKGENNAVTA--HGR-TDPAQSTGF 439 (553)
T ss_pred -----ccceeCC-CceEEEeeEEeecCCEEe---cCceEEEEccEEEEeccccCCCCCCceEEEe--CCC-CCCCCCceE
Confidence 4444444 345789999997656544 34588999999852 1 12 322 111 122344578
Q ss_pred EEEeEEEeCCc
Q 041470 273 HVNNVSFTETQ 283 (394)
Q Consensus 273 ~i~n~~~~~~~ 283 (394)
.|.||++....
T Consensus 440 vf~~C~it~~~ 450 (553)
T PLN02708 440 VFQNCLINGTE 450 (553)
T ss_pred EEEccEEecCC
Confidence 99999997643
No 51
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.40 E-value=0.00019 Score=50.64 Aligned_cols=38 Identities=34% Similarity=0.375 Sum_probs=23.6
Q ss_pred cCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecc
Q 041470 43 AAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPL 85 (394)
Q Consensus 43 A~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l 85 (394)
|+|||+||||+||.+|+++ .. .+.++=-.|.||.+++|
T Consensus 1 A~GDGvtdDt~A~~a~l~a-~~----~g~~IDg~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEA-SP----VGRKIDGAGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHHH-S-----TTS-EE-TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHhc-cC----CCeEEecCCceEEEeeC
Confidence 7899999999999999983 43 34455556779999875
No 52
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.39 E-value=0.0056 Score=58.84 Aligned_cols=180 Identities=14% Similarity=0.176 Sum_probs=89.7
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEe
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFK 129 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~ 129 (394)
-|=.-||+||+++....+..-+|+|.+| +|.-. +.+... |. +|+|..++
T Consensus 10 gdf~TIq~Aida~p~~~~~~~~I~I~~G-~Y~E~-V~i~~~--k~-~v~l~G~~-------------------------- 58 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDNNTSRYTIFIKPG-TYREK-VTIPRS--KP-NVTLIGEG-------------------------- 58 (298)
T ss_dssp SSBSSHHHHHHHS-SSSSS-EEEEE-SE-EEE---EEE-ST--ST-TEEEEES---------------------------
T ss_pred CCccCHHHHHHhchhcCCceEEEEEeCe-eEccc-cEeccc--cc-eEEEEecC--------------------------
Confidence 4556799999965543212347999999 99743 333321 12 56665543
Q ss_pred eeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCc------eeEEeceecEEEEeEEEECCC
Q 041470 130 KFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQM------HIAFERSTNIEATNLTIMAPG 203 (394)
Q Consensus 130 ~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~------~i~~~~~~nv~i~~~~i~~~~ 203 (394)
.....|++... ...+..-+. ...+ ....+++.+++|+|+|+... .+. ...+...+.+|++.+.
T Consensus 59 -~~~tiI~~~~~-~~~~~~t~~------saT~-~v~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~~~g~- 127 (298)
T PF01095_consen 59 -RDKTIITGNDN-AADGGGTFR------SATF-SVNADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCRFLGY- 127 (298)
T ss_dssp -TTTEEEEE----TTTB-HCGG------C-SE-EE-STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEEEE-S-
T ss_pred -CCceEEEEecc-ccccccccc------cccc-cccccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeEEccc-
Confidence 11122222100 000000011 1133 34578999999999986432 233 3567889999999884
Q ss_pred CCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC------ce-eEEeecCCcCCCCCEEEEEEEe
Q 041470 204 NSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG------HG-ISIGSLGMKGRNEKVEFVHVNN 276 (394)
Q Consensus 204 ~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~------~g-i~iGs~g~~~~~~~v~nI~i~n 276 (394)
.|-+.... .....++|+|...-|-|.= .....++||++..- .| |.--+ +. +...-....|.|
T Consensus 128 ----QDTL~~~~-~r~y~~~c~IeG~vDFIfG---~~~a~f~~c~i~~~~~~~~~~~~ItA~~--r~-~~~~~~G~vF~~ 196 (298)
T PF01095_consen 128 ----QDTLYANG-GRQYFKNCYIEGNVDFIFG---NGTAVFENCTIHSRRPGGGQGGYITAQG--RT-SPSQKSGFVFDN 196 (298)
T ss_dssp ----TT-EEE-S-SEEEEES-EEEESEEEEEE---SSEEEEES-EEEE--SSTSSTEEEEEE------CTTSS-EEEEES
T ss_pred ----cceeeecc-ceeEEEeeEEEecCcEEEC---CeeEEeeeeEEEEeccccccceeEEeCC--cc-ccCCCeEEEEEE
Confidence 45455443 4567788999877666553 23667888888531 22 22211 10 123345778999
Q ss_pred EEEeCC
Q 041470 277 VSFTET 282 (394)
Q Consensus 277 ~~~~~~ 282 (394)
|++...
T Consensus 197 c~i~~~ 202 (298)
T PF01095_consen 197 CTITGD 202 (298)
T ss_dssp -EEEES
T ss_pred eEEecC
Confidence 998864
No 53
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.36 E-value=0.014 Score=60.24 Aligned_cols=180 Identities=16% Similarity=0.152 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEee
Q 041470 51 DTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKK 130 (394)
Q Consensus 51 dt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~~ 130 (394)
|=.-||+||+++....+..-+|+|.+| +|.-. +.+... | .+++|..+|.
T Consensus 243 ~f~TIq~Av~a~p~~~~~r~vI~Vk~G-vY~E~-V~I~~~--k-~~i~l~G~g~-------------------------- 291 (537)
T PLN02506 243 HYRTITEAINEAPNHSNRRYIIYVKKG-VYKEN-IDMKKK--K-TNIMLVGDGI-------------------------- 291 (537)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCC-eeeEE-EeccCC--C-ceEEEEEcCC--------------------------
Confidence 467899999965543213458999999 99654 112111 1 2666655431
Q ss_pred eeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCc----eeEE-eceecEEEEeEEEECCCCC
Q 041470 131 FGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQM----HIAF-ERSTNIEATNLTIMAPGNS 205 (394)
Q Consensus 131 ~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~----~i~~-~~~~nv~i~~~~i~~~~~~ 205 (394)
....|++.... ..| |... -..-.....+++..+|++|+|.... .+.+ ...+...+.+|++....
T Consensus 292 -~~tiIt~~~~~-~~g---~~T~----~saT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~Q-- 360 (537)
T PLN02506 292 -GQTVVTGNRNF-MQG---WTTF----RTATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQ-- 360 (537)
T ss_pred -CCeEEEeCccc-cCC---CCcc----cceEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeccc--
Confidence 11112221000 001 1000 0133345678999999999988432 2333 35789999999999843
Q ss_pred CCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC------ce-eEEeecCCcCCCCCEEEEEEEeEE
Q 041470 206 PNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG------HG-ISIGSLGMKGRNEKVEFVHVNNVS 278 (394)
Q Consensus 206 ~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~------~g-i~iGs~g~~~~~~~v~nI~i~n~~ 278 (394)
|-+.... ..-..++|+|...=|-|. |.....++||.+..- .| |.- .++. +...-..+.|.||+
T Consensus 361 ---DTLy~~~-~rqyy~~C~I~GtVDFIF---G~a~avfq~C~i~~r~~~~~~~~~iTA--~~r~-~~~~~~G~vf~~c~ 430 (537)
T PLN02506 361 ---DTLYAHS-LRQFYRECEIYGTIDFIF---GNGAAVLQNCKIYTRVPLPLQKVTITA--QGRK-SPHQSTGFSIQDSY 430 (537)
T ss_pred ---ccceecC-CceEEEeeEEecccceEc---cCceeEEeccEEEEccCCCCCCceEEc--cCCC-CCCCCcEEEEEcCE
Confidence 3344333 346889999986555443 345789999998632 12 222 1211 22234578899999
Q ss_pred EeCC
Q 041470 279 FTET 282 (394)
Q Consensus 279 ~~~~ 282 (394)
+...
T Consensus 431 i~~~ 434 (537)
T PLN02506 431 VLAT 434 (537)
T ss_pred EccC
Confidence 9764
No 54
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.35 E-value=0.024 Score=58.34 Aligned_cols=180 Identities=14% Similarity=0.120 Sum_probs=104.9
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEe
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFK 129 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~ 129 (394)
-|=.-||+||+++....+..-+|+|.+| +|.-. +.+... |. +++|..+|.
T Consensus 216 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~--k~-~i~l~G~g~------------------------- 265 (520)
T PLN02201 216 GNFTTIMDAVLAAPDYSTKRYVIYIKKG-VYLEN-VEIKKK--KW-NIMMVGDGI------------------------- 265 (520)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCc-eeEEE-EEecCC--Cc-eEEEEecCC-------------------------
Confidence 4577899999965443213468999999 99743 233211 12 666666541
Q ss_pred eeeceEEEece-EEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC----ceeEE-eceecEEEEeEEEECCC
Q 041470 130 KFGGLFIRGVG-SINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ----MHIAF-ERSTNIEATNLTIMAPG 203 (394)
Q Consensus 130 ~~~nv~I~G~G-~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~----~~i~~-~~~~nv~i~~~~i~~~~ 203 (394)
....|++.. ..|| |... -..-.....+++..+|++|+|+.. ..+.+ ...+...+.+|++...
T Consensus 266 --~~TiIt~~~~~~~g-----~~T~----~SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~- 333 (520)
T PLN02201 266 --DATVITGNRSFIDG-----WTTF----RSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGY- 333 (520)
T ss_pred --CCcEEEeCCccCCC-----Cccc----ceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeecc-
Confidence 111111110 0111 1000 012334457889999999998843 23333 3578999999999984
Q ss_pred CCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC------ce-eEEeecCCcCCCCCEEEEEEEe
Q 041470 204 NSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG------HG-ISIGSLGMKGRNEKVEFVHVNN 276 (394)
Q Consensus 204 ~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~------~g-i~iGs~g~~~~~~~v~nI~i~n 276 (394)
.|-+..... .-..++|+|...=|-|. |.....++||.+..- .| |.- .++ .+...-..+.|.|
T Consensus 334 ----QDTLy~~~~-Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~iTA--q~r-~~~~~~~Gfvf~~ 402 (520)
T PLN02201 334 ----QDTLYTHTM-RQFYRECRITGTVDFIF---GDATAVFQNCQILAKKGLPNQKNTITA--QGR-KDPNQPTGFSIQF 402 (520)
T ss_pred ----CCeeEeCCC-CEEEEeeEEeecccEEe---cCceEEEEccEEEEecCCCCCCceEEe--cCC-CCCCCCcEEEEEe
Confidence 444554443 45779999996655543 345789999998641 22 322 111 1223345788999
Q ss_pred EEEeCC
Q 041470 277 VSFTET 282 (394)
Q Consensus 277 ~~~~~~ 282 (394)
|++...
T Consensus 403 C~it~~ 408 (520)
T PLN02201 403 SNISAD 408 (520)
T ss_pred eEEecC
Confidence 999864
No 55
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.34 E-value=0.027 Score=58.00 Aligned_cols=180 Identities=13% Similarity=0.135 Sum_probs=103.5
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEe
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFK 129 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~ 129 (394)
-|-.-||+||+++....+..-+|+|.+| +|.-. +.+... |. +++|..+|.
T Consensus 228 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~--k~-~itl~G~g~------------------------- 277 (530)
T PLN02933 228 GNFTTINEAVSAAPNSSETRFIIYIKGG-EYFEN-VELPKK--KT-MIMFIGDGI------------------------- 277 (530)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEcCc-eEEEE-EEecCC--Cc-eEEEEEcCC-------------------------
Confidence 3467899999965443213458999999 99743 333221 22 666665541
Q ss_pred eeeceEEEece-EEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC----ceeEEe-ceecEEEEeEEEECCC
Q 041470 130 KFGGLFIRGVG-SINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ----MHIAFE-RSTNIEATNLTIMAPG 203 (394)
Q Consensus 130 ~~~nv~I~G~G-~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~----~~i~~~-~~~nv~i~~~~i~~~~ 203 (394)
....|++.. ..|| |... -..-.....+++..+|++|+|... ..+.+. .++...+.+|++....
T Consensus 278 --~~TiIt~~~~~~dg-----~~T~----~SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q 346 (530)
T PLN02933 278 --GKTVIKANRSRIDG-----WSTF----QTATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQ 346 (530)
T ss_pred --CCcEEEeCCccCCC-----Cccc----cceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecc
Confidence 111111110 0011 1100 012334466889999999998743 223333 5789999999999843
Q ss_pred CCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC------ce-eEEeecCCcCCCCCEEEEEEEe
Q 041470 204 NSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG------HG-ISIGSLGMKGRNEKVEFVHVNN 276 (394)
Q Consensus 204 ~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~------~g-i~iGs~g~~~~~~~v~nI~i~n 276 (394)
|-+.... ..-..++|+|...=|-|. |.....++||.+..- .| |.- .++ .....-..+.|.|
T Consensus 347 -----DTLy~~~-~Rqyy~~C~IeGtVDFIF---G~a~avFq~C~i~~~~~~~~~~~~iTA--q~r-~~~~~~tGfvf~~ 414 (530)
T PLN02933 347 -----DTLYVHS-AKQFYRECDIYGTIDFIF---GNAAVVFQNCSLYARKPNPNHKIAFTA--QSR-NQSDQPTGISIIS 414 (530)
T ss_pred -----cccccCC-CceEEEeeEEecccceec---cCceEEEeccEEEEeccCCCCceEEEe--cCC-CCCCCCceEEEEe
Confidence 3344333 345889999986545433 345788999998531 12 222 111 1223345788999
Q ss_pred EEEeCC
Q 041470 277 VSFTET 282 (394)
Q Consensus 277 ~~~~~~ 282 (394)
|.+...
T Consensus 415 C~it~~ 420 (530)
T PLN02933 415 SRILAA 420 (530)
T ss_pred eEEecC
Confidence 999874
No 56
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.32 E-value=0.024 Score=59.42 Aligned_cols=181 Identities=13% Similarity=0.110 Sum_probs=105.0
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEe
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFK 129 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~ 129 (394)
-|-.-||+||+++....+..-+|+|.+| +|.-. +.+... |. +++|..+|.
T Consensus 295 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~--k~-~i~l~G~g~------------------------- 344 (596)
T PLN02745 295 GNFTTISDALAAMPAKYEGRYVIYVKQG-IYDET-VTVDKK--MV-NVTMYGDGS------------------------- 344 (596)
T ss_pred CCcccHHHHHHhccccCCceEEEEEeCC-eeEEE-EEEcCC--Cc-eEEEEecCC-------------------------
Confidence 3567899999965443213457999999 99743 333221 22 677766541
Q ss_pred eeeceEEEece-EEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC----ceeEE-eceecEEEEeEEEECCC
Q 041470 130 KFGGLFIRGVG-SINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ----MHIAF-ERSTNIEATNLTIMAPG 203 (394)
Q Consensus 130 ~~~nv~I~G~G-~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~----~~i~~-~~~~nv~i~~~~i~~~~ 203 (394)
....|+|.. .-+|-+ .+ -..-.....+++..+|++|+|... ..+.+ ..++...+.+|+|....
T Consensus 345 --~~TiIt~~~~~~~g~~-T~--------~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~Q 413 (596)
T PLN02745 345 --QKTIVTGNKNFADGVR-TF--------RTATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQ 413 (596)
T ss_pred --CceEEEECCcccCCCc-ce--------eeEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecc
Confidence 011111100 000000 01 012333467889999999998743 22333 35789999999999854
Q ss_pred CCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC------ce-eEEeecCCcCCCCCEEEEEEEe
Q 041470 204 NSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG------HG-ISIGSLGMKGRNEKVEFVHVNN 276 (394)
Q Consensus 204 ~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~------~g-i~iGs~g~~~~~~~v~nI~i~n 276 (394)
+ -+.... ..-..++|+|...=|-|. |.....++||.+..- .| |.- .++ .+...-..+.|.|
T Consensus 414 D-----TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~iTA--q~r-~~~~~~~Gfvf~~ 481 (596)
T PLN02745 414 D-----TLYAQT-HRQFYRSCVITGTIDFIF---GDAAAIFQNCLIFVRKPLPNQQNTVTA--QGR-VDKFETTGIVLQN 481 (596)
T ss_pred c-----ccccCC-CcEEEEeeEEEeeccEEe---cceeEEEEecEEEEecCCCCCCceEEe--cCC-CCCCCCceEEEEe
Confidence 3 333333 457899999996655433 346889999998632 22 222 111 1223345789999
Q ss_pred EEEeCCc
Q 041470 277 VSFTETQ 283 (394)
Q Consensus 277 ~~~~~~~ 283 (394)
|++....
T Consensus 482 c~i~~~~ 488 (596)
T PLN02745 482 CRIAPDE 488 (596)
T ss_pred eEEecCc
Confidence 9998754
No 57
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.31 E-value=0.027 Score=57.84 Aligned_cols=182 Identities=15% Similarity=0.200 Sum_probs=104.3
Q ss_pred chHHHHHHHHHHhhcc-CCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEE
Q 041470 50 DDTQAFKDAWKATCKS-SSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQF 128 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~-~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~ 128 (394)
-|-.-||+||+++... .+..-+|+|.+| +|.-. +.+... |. +++|..+|.
T Consensus 235 G~f~TIq~AI~a~~~~~~~~r~vI~Ik~G-vY~E~-V~I~~~--k~-nItl~G~g~------------------------ 285 (529)
T PLN02170 235 GTHKTIGEALLSTSLESGGGRTVIYLKAG-TYHEN-LNIPTK--QK-NVMLVGDGK------------------------ 285 (529)
T ss_pred CchhhHHHHHHhcccccCCceEEEEEeCC-eeEEE-EecCCC--Cc-eEEEEEcCC------------------------
Confidence 3577899999954432 113457999999 99743 222211 22 676666541
Q ss_pred eeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCc----eeEE-eceecEEEEeEEEECCC
Q 041470 129 KKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQM----HIAF-ERSTNIEATNLTIMAPG 203 (394)
Q Consensus 129 ~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~----~i~~-~~~~nv~i~~~~i~~~~ 203 (394)
....|+|... .+.| |... ...-.....+++..+|++|+|.... .+.+ ...+...+.+|++....
T Consensus 286 ---~~TiIt~~~~-~~~g---~~T~----~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQ 354 (529)
T PLN02170 286 ---GKTVIVGSRS-NRGG---WTTY----QTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQ 354 (529)
T ss_pred ---CCeEEEeCCc-CCCC---Cccc----cceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccC
Confidence 1122222100 0001 1000 1133445678899999999988432 2333 35788999999999843
Q ss_pred CCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC-----ce-eEEeecCCcCCCCCEEEEEEEeE
Q 041470 204 NSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG-----HG-ISIGSLGMKGRNEKVEFVHVNNV 277 (394)
Q Consensus 204 ~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~-----~g-i~iGs~g~~~~~~~v~nI~i~n~ 277 (394)
|-+...+ ..-..++|+|...=|-|. |.....++||.+..- .| |.- .++. ....-..+.|.||
T Consensus 355 -----DTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avFq~C~I~~~~~~~~~g~ITA--q~R~-~~~~~~Gfvf~~C 422 (529)
T PLN02170 355 -----DSLYTHS-KRQFYRETDITGTVDFIF---GNSAVVFQSCNIAARKPSGDRNYVTA--QGRS-DPNQNTGISIHNC 422 (529)
T ss_pred -----CcceeCC-CCEEEEeeEEccccceec---ccceEEEeccEEEEecCCCCceEEEe--cCCC-CCCCCceEEEEee
Confidence 4444443 345779999986555443 345789999988642 22 222 1111 2233457889999
Q ss_pred EEeCCc
Q 041470 278 SFTETQ 283 (394)
Q Consensus 278 ~~~~~~ 283 (394)
++....
T Consensus 423 ~it~~~ 428 (529)
T PLN02170 423 RITAES 428 (529)
T ss_pred EEecCC
Confidence 998754
No 58
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.28 E-value=0.011 Score=53.63 Aligned_cols=104 Identities=26% Similarity=0.439 Sum_probs=67.7
Q ss_pred EEeeeeEeCCC------CceeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEE
Q 041470 170 HIDDLTFEDSP------QMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLN 243 (394)
Q Consensus 170 ~I~~vti~ns~------~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~ 243 (394)
.|+++++.... ..++++..++++.|+||++.+. +.+|+.+..+....+.+.... .++.+..++.++.
T Consensus 95 ~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 167 (225)
T PF12708_consen 95 QIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNVI 167 (225)
T ss_dssp EEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEESCEEEEE
T ss_pred EEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccc---eeeeeccceeEEE
Confidence 37787777543 2457888899999999999873 567788775444444333221 1233333456788
Q ss_pred EEeeEecCC-ceeEEeecCCcCCCCCEEEEEEEeEEEeC-CceeEEEEE
Q 041470 244 ITNIFCGPG-HGISIGSLGMKGRNEKVEFVHVNNVSFTE-TQNGVRIKT 290 (394)
Q Consensus 244 i~n~~~~~~-~gi~iGs~g~~~~~~~v~nI~i~n~~~~~-~~~gi~ik~ 290 (394)
+.||++..+ .|+..++ ++++++||++.+ ...||.+..
T Consensus 168 ~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~ 206 (225)
T PF12708_consen 168 VNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEG 206 (225)
T ss_dssp EECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEE
T ss_pred ECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEEC
Confidence 888888765 5543332 699999999998 777887754
No 59
>PLN02432 putative pectinesterase
Probab=97.27 E-value=0.051 Score=51.93 Aligned_cols=108 Identities=10% Similarity=0.038 Sum_probs=68.0
Q ss_pred EecccceEEeeeeEeCCCC---ceeEE-eceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCC
Q 041470 163 VANSNNVHIDDLTFEDSPQ---MHIAF-ERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDG 238 (394)
Q Consensus 163 ~~~~~nv~I~~vti~ns~~---~~i~~-~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~ 238 (394)
....+++..+||+|+|... -.+.+ ...+...+.+|++.... |-+.... ..-..++|+|...=|-|. |
T Consensus 90 ~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~Q-----DTLy~~~-gr~yf~~c~I~G~VDFIF---G 160 (293)
T PLN02432 90 SVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQ-----DTLLDDT-GRHYYRNCYIEGATDFIC---G 160 (293)
T ss_pred EEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEeccc-----ceeEECC-CCEEEEeCEEEecccEEe---c
Confidence 3456889999999998733 12222 24688999999999843 4343332 456889999987656554 2
Q ss_pred CeeEEEEeeEecC---Cce-eEEeecCCcCCCCCEEEEEEEeEEEeCC
Q 041470 239 SSHLNITNIFCGP---GHG-ISIGSLGMKGRNEKVEFVHVNNVSFTET 282 (394)
Q Consensus 239 ~~nV~i~n~~~~~---~~g-i~iGs~g~~~~~~~v~nI~i~n~~~~~~ 282 (394)
.-...+++|.+.. ..| |.-- ++. ....-....|.||++...
T Consensus 161 ~g~a~Fe~c~i~s~~~~~g~itA~--~r~-~~~~~~Gfvf~~c~itg~ 205 (293)
T PLN02432 161 NAASLFEKCHLHSLSPNNGAITAQ--QRT-SASENTGFTFLGCKLTGA 205 (293)
T ss_pred CceEEEEeeEEEEecCCCCeEEec--CCC-CCCCCceEEEEeeEEccc
Confidence 3468999999863 134 3221 110 112234688999999753
No 60
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.26 E-value=0.025 Score=58.58 Aligned_cols=181 Identities=14% Similarity=0.173 Sum_probs=105.5
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEe
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFK 129 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~ 129 (394)
-|=..||+||+++....+..-+|+|.+| +|.-. +.+... |. +++|..+|.
T Consensus 246 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~-V~i~~~--k~-~i~l~G~g~------------------------- 295 (548)
T PLN02301 246 GKYKTVKEAVASAPDNSKTRYVIYVKKG-TYKEN-VEIGKK--KK-NLMLVGDGM------------------------- 295 (548)
T ss_pred CCcccHHHHHHhhhhcCCceEEEEEeCc-eeeEE-EEecCC--Cc-eEEEEecCC-------------------------
Confidence 3567899999965543212358999999 99743 223211 22 666655541
Q ss_pred eeeceEEEece-EEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC----ceeEE-eceecEEEEeEEEECCC
Q 041470 130 KFGGLFIRGVG-SINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ----MHIAF-ERSTNIEATNLTIMAPG 203 (394)
Q Consensus 130 ~~~nv~I~G~G-~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~----~~i~~-~~~~nv~i~~~~i~~~~ 203 (394)
..-.|+|.. ..||.+ . + ...-.....+++..+|++|+|... ..+.+ ..++...+.+|+|....
T Consensus 296 --~~TiIt~~~~~~dg~~-T-~-------~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q 364 (548)
T PLN02301 296 --DSTIITGSLNVIDGST-T-F-------RSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQ 364 (548)
T ss_pred --CCcEEEeCCccCCCCC-c-e-------eeEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecc
Confidence 011111110 011111 0 1 113334456889999999998753 22333 25789999999999843
Q ss_pred CCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC------ce-eEEeecCCcCCCCCEEEEEEEe
Q 041470 204 NSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG------HG-ISIGSLGMKGRNEKVEFVHVNN 276 (394)
Q Consensus 204 ~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~------~g-i~iGs~g~~~~~~~v~nI~i~n 276 (394)
|-+...+ ..-..++|+|...=|-|. |.....++||.+..- .+ |.- .++. +...-..+.|.|
T Consensus 365 -----DTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~c~i~~~~~~~~~~~~iTA--qgr~-~~~~~tG~vf~~ 432 (548)
T PLN02301 365 -----DTLYAHS-LRQFYRDSYITGTVDFIF---GNAAVVFQNCKIVARKPMAGQKNMVTA--QGRT-DPNQNTGISIQK 432 (548)
T ss_pred -----ccceecC-CcEEEEeeEEEeccceec---ccceeEEeccEEEEecCCCCCCceEEe--cCCC-CCCCCCEEEEEe
Confidence 4444443 345889999996655443 346889999998531 12 322 1111 223445789999
Q ss_pred EEEeCCc
Q 041470 277 VSFTETQ 283 (394)
Q Consensus 277 ~~~~~~~ 283 (394)
|++....
T Consensus 433 c~i~~~~ 439 (548)
T PLN02301 433 CDIIASS 439 (548)
T ss_pred eEEecCc
Confidence 9998753
No 61
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.25 E-value=0.052 Score=55.32 Aligned_cols=182 Identities=13% Similarity=0.133 Sum_probs=105.5
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEe
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFK 129 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~ 129 (394)
-|-.-||+||+++....+..-+|+|.+| +|.-. +.+... |. +++|..+|.
T Consensus 207 G~f~TIq~AI~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~--k~-nItliGdg~------------------------- 256 (509)
T PLN02488 207 GKYNTVNAAIAAAPEHSRKRFVIYIKTG-VYDEI-VRIGST--KP-NLTLIGDGQ------------------------- 256 (509)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCC-eeEEE-EEecCC--Cc-cEEEEecCC-------------------------
Confidence 4566899999965543213458999999 99743 223211 22 677766541
Q ss_pred eeeceEEEec-eEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC----ceeEEe-ceecEEEEeEEEECCC
Q 041470 130 KFGGLFIRGV-GSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ----MHIAFE-RSTNIEATNLTIMAPG 203 (394)
Q Consensus 130 ~~~nv~I~G~-G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~----~~i~~~-~~~nv~i~~~~i~~~~ 203 (394)
....|+|. ..-+|.+ .+. .+-.....+++..+|++|+|... ..+.+. .++...+.+|+|...
T Consensus 257 --~~TiIt~n~~~~~g~~-T~~--------SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~Gy- 324 (509)
T PLN02488 257 --DSTIITGNLSASNGKR-TFY--------TATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGY- 324 (509)
T ss_pred --CceEEEEcccccCCCC-cee--------eEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecc-
Confidence 01111110 0001100 111 12233456788889999998743 233333 578999999999984
Q ss_pred CCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC------ceeEEeecCCcCCCCCEEEEEEEeE
Q 041470 204 NSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG------HGISIGSLGMKGRNEKVEFVHVNNV 277 (394)
Q Consensus 204 ~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~------~gi~iGs~g~~~~~~~v~nI~i~n~ 277 (394)
.|-+...+ ..-..++|+|...=|-|. |...+.++||.+..- .+ .|--.++ .....-..+.|.||
T Consensus 325 ----QDTLy~~~-~RqyyrdC~I~GtVDFIF---G~a~avFq~C~I~sr~~~~~~~~-~ITAq~R-~~~~~~tGfvf~~C 394 (509)
T PLN02488 325 ----QDALYPHR-DRQFYRECFITGTVDFIC---GNAAAVFQFCQIVARQPMMGQSN-VITAQSR-ESKDDNSGFSIQKC 394 (509)
T ss_pred ----CcceeeCC-CCEEEEeeEEeeccceEe---cceEEEEEccEEEEecCCCCCCE-EEEeCCC-CCCCCCcEEEEEee
Confidence 34444443 457889999997656554 456899999998631 23 2211111 12233457899999
Q ss_pred EEeCCc
Q 041470 278 SFTETQ 283 (394)
Q Consensus 278 ~~~~~~ 283 (394)
++....
T Consensus 395 ~it~~~ 400 (509)
T PLN02488 395 NITASS 400 (509)
T ss_pred EEecCC
Confidence 998754
No 62
>PLN02916 pectinesterase family protein
Probab=97.25 E-value=0.034 Score=56.83 Aligned_cols=110 Identities=12% Similarity=0.075 Sum_probs=71.4
Q ss_pred EEecccceEEeeeeEeCCCC----ceeEEe-ceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeC
Q 041470 162 VVANSNNVHIDDLTFEDSPQ----MHIAFE-RSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIG 236 (394)
Q Consensus 162 ~~~~~~nv~I~~vti~ns~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~ 236 (394)
.....+++..+||+|+|... ..+.+. .++...+.+|++... .|-+...+ ..-..++|+|...=|-|.
T Consensus 272 ~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFIF-- 343 (502)
T PLN02916 272 FGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGY-----QDTLFVHS-LRQFYRDCHIYGTIDFIF-- 343 (502)
T ss_pred EEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecc-----CceeEeCC-CCEEEEecEEecccceec--
Confidence 34456789999999998743 223332 578899999999984 34454444 346789999996555443
Q ss_pred CCCeeEEEEeeEecCC------ce-eEEeecCCcCCCCCEEEEEEEeEEEeCCc
Q 041470 237 DGSSHLNITNIFCGPG------HG-ISIGSLGMKGRNEKVEFVHVNNVSFTETQ 283 (394)
Q Consensus 237 s~~~nV~i~n~~~~~~------~g-i~iGs~g~~~~~~~v~nI~i~n~~~~~~~ 283 (394)
|.....++||.+..- .| |.- .++. ....-..+.|.||++....
T Consensus 344 -G~a~avFq~C~I~~~~~~~~~~g~ITA--q~r~-~~~~~tGfvf~~C~it~~~ 393 (502)
T PLN02916 344 -GDAAVVFQNCDIFVRRPMDHQGNMITA--QGRD-DPHENTGISIQHSRVRASP 393 (502)
T ss_pred -cCceEEEecCEEEEecCCCCCcceEEe--cCCC-CCCCCcEEEEEeeEEecCc
Confidence 346889999988531 22 222 1111 2233457889999998753
No 63
>PLN02671 pectinesterase
Probab=97.24 E-value=0.098 Score=51.32 Aligned_cols=189 Identities=12% Similarity=0.106 Sum_probs=102.7
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEe
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFK 129 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~ 129 (394)
-|-.-||+||+++....+..-+|+|.+| +|.-. +.+... |. +++|..++. .+ ....|...
T Consensus 69 Gdf~TIQ~AIdavP~~~~~~~~I~Ik~G-vY~Ek-V~I~~~--k~-~Itl~G~g~-----~~----------~~TvIt~~ 128 (359)
T PLN02671 69 GDSLTVQGAVDMVPDYNSQRVKIYILPG-IYREK-VLVPKS--KP-YISFIGNES-----RA----------GDTVISWN 128 (359)
T ss_pred CCccCHHHHHHhchhcCCccEEEEEeCc-eEEEE-EEECCC--CC-eEEEEecCC-----CC----------CCEEEEcC
Confidence 4577899999965543212358999999 99743 333211 22 666665430 00 00111111
Q ss_pred eeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC--------ceeEE-eceecEEEEeEEEE
Q 041470 130 KFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ--------MHIAF-ERSTNIEATNLTIM 200 (394)
Q Consensus 130 ~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~--------~~i~~-~~~~nv~i~~~~i~ 200 (394)
. +. +....+|..| ... ...-.....+++..+||+|+|... ..+.+ ...+.+.+.+|++.
T Consensus 129 ~--~a-----~~~~~~g~~~-gT~----~SaTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~ 196 (359)
T PLN02671 129 D--KA-----SDLDSNGFEL-GTY----RTASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVL 196 (359)
T ss_pred C--cc-----cccccCCccc-cce----eeEEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEe
Confidence 0 00 0000111111 000 113334556888999999998731 12222 24789999999999
Q ss_pred CCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC---ce-eEEeecCCcCCCCCEEEEEEEe
Q 041470 201 APGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG---HG-ISIGSLGMKGRNEKVEFVHVNN 276 (394)
Q Consensus 201 ~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~---~g-i~iGs~g~~~~~~~v~nI~i~n 276 (394)
... |-+.... ..-..++|+|...=|-|. |.-...++||++... .| |.--+. . ....-....|.|
T Consensus 197 G~Q-----DTLy~~~-gR~yf~~CyIeG~VDFIF---G~g~A~Fe~C~I~s~~~~~G~ITA~~r--~-~~~~~~GfvF~~ 264 (359)
T PLN02671 197 GAQ-----DTLLDET-GSHYFYQCYIQGSVDFIF---GNAKSLYQDCVIQSTAKRSGAIAAHHR--D-SPTEDTGFSFVN 264 (359)
T ss_pred ccc-----cccEeCC-CcEEEEecEEEEeccEEe---cceeEEEeccEEEEecCCCeEEEeecc--C-CCCCCccEEEEc
Confidence 843 3333232 346889999987656554 335789999998642 24 322111 0 112234678999
Q ss_pred EEEeCC
Q 041470 277 VSFTET 282 (394)
Q Consensus 277 ~~~~~~ 282 (394)
|++...
T Consensus 265 C~itg~ 270 (359)
T PLN02671 265 CVINGT 270 (359)
T ss_pred cEEccC
Confidence 999764
No 64
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.24 E-value=0.024 Score=58.79 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=103.6
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEe
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFK 129 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~ 129 (394)
-|=.-||+||+++....+..-+|+|.+| +|.-. +.+... |. +++|..+|.
T Consensus 240 G~f~TIq~Ai~a~p~~~~~r~vI~Ik~G-vY~E~-V~i~~~--k~-~i~l~G~g~------------------------- 289 (541)
T PLN02416 240 GNFSTITDAINFAPNNSNDRIIIYVREG-VYEEN-VEIPIY--KT-NIVLIGDGS------------------------- 289 (541)
T ss_pred CCccCHHHHHHhhhhcCCceEEEEEeCc-eeEEE-EecCCC--Cc-cEEEEecCC-------------------------
Confidence 3567899999965443212346899999 99743 223211 22 677666541
Q ss_pred eeeceEEEece-EEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCc----eeEE-eceecEEEEeEEEECCC
Q 041470 130 KFGGLFIRGVG-SINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQM----HIAF-ERSTNIEATNLTIMAPG 203 (394)
Q Consensus 130 ~~~nv~I~G~G-~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~----~i~~-~~~~nv~i~~~~i~~~~ 203 (394)
....|+|.. ..|| |... ...-.....+++..+||+|+|.... .+.+ ..++...+.+|+|....
T Consensus 290 --~~TiIt~~~~~~~g-----~~T~----~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q 358 (541)
T PLN02416 290 --DVTFITGNRSVVDG-----WTTF----RSATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQ 358 (541)
T ss_pred --CceEEeCCCccCCC-----CCcc----ceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEeccc
Confidence 011111110 0011 1100 0122333578999999999987442 2222 25788999999999854
Q ss_pred CCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC---ce--eEEeecCCcCCCCCEEEEEEEeEE
Q 041470 204 NSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG---HG--ISIGSLGMKGRNEKVEFVHVNNVS 278 (394)
Q Consensus 204 ~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~---~g--i~iGs~g~~~~~~~v~nI~i~n~~ 278 (394)
+ -+...+ ..-..++|+|...=|-|. |.....++||.+..- .| -.|--.++ .....-..+.|.||+
T Consensus 359 D-----TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~c~i~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf~~c~ 428 (541)
T PLN02416 359 D-----TLYVHS-FRQFYRECDIYGTIDYIF---GNAAVVFQACNIVSKMPMPGQFTVITAQSR-DTPDEDTGISIQNCS 428 (541)
T ss_pred c-----hhccCC-CceEEEeeEEeeccceee---ccceEEEeccEEEEecCCCCCceEEECCCC-CCCCCCCEEEEEeeE
Confidence 3 333333 456889999996555543 345889999998542 11 11211111 122334578899999
Q ss_pred EeCCc
Q 041470 279 FTETQ 283 (394)
Q Consensus 279 ~~~~~ 283 (394)
+....
T Consensus 429 i~~~~ 433 (541)
T PLN02416 429 ILATE 433 (541)
T ss_pred EecCC
Confidence 98643
No 65
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.23 E-value=0.024 Score=58.75 Aligned_cols=183 Identities=13% Similarity=0.104 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHhhcc--CCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEE
Q 041470 50 DDTQAFKDAWKATCKS--SSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQ 127 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~--~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~ 127 (394)
-|-.-||+||+++... .+..-+|+|.+| +|.-. +.+... |. +++|..+|.
T Consensus 233 G~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G-~Y~E~-V~i~~~--k~-~i~l~G~g~----------------------- 284 (539)
T PLN02995 233 GHFNTVQAAIDVAGRRKVTSGRFVIYVKRG-IYQEN-INVRLN--ND-DIMLVGDGM----------------------- 284 (539)
T ss_pred CCccCHHHHHHhcccccCCCceEEEEEeCC-EeEEE-EEecCC--CC-cEEEEEcCC-----------------------
Confidence 3567899999965431 113467999999 99754 222211 22 677766541
Q ss_pred EeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC----ceeEE-eceecEEEEeEEEECC
Q 041470 128 FKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ----MHIAF-ERSTNIEATNLTIMAP 202 (394)
Q Consensus 128 ~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~----~~i~~-~~~~nv~i~~~~i~~~ 202 (394)
....|+|.--. +.+ |... ...-.....+++..+|++|+|... ..+.+ ..++...+.+|+|...
T Consensus 285 ----~~TvIt~~~~~-~~~---~~T~----~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~ 352 (539)
T PLN02995 285 ----RSTIITGGRSV-KGG---YTTY----NSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGY 352 (539)
T ss_pred ----CCeEEEeCCcc-CCC---Cccc----ceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecc
Confidence 11111111000 000 0000 112223456889999999998753 22333 3578999999999985
Q ss_pred CCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC------ceeEEeecCCcCCCCCEEEEEEEe
Q 041470 203 GNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG------HGISIGSLGMKGRNEKVEFVHVNN 276 (394)
Q Consensus 203 ~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~------~gi~iGs~g~~~~~~~v~nI~i~n 276 (394)
.| -+.... ..-..++|+|...=|-|. |.....++||.+..- .| .|--.++. ....-..+.|.|
T Consensus 353 QD-----TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~-~iTA~~r~-~~~~~~G~vf~~ 421 (539)
T PLN02995 353 QD-----TLMVHS-QRQFYRECYIYGTVDFIF---GNAAAVFQNCIILPRRPLKGQAN-VITAQGRA-DPFQNTGISIHN 421 (539)
T ss_pred cc-----hhccCC-CceEEEeeEEeeccceEe---cccceEEeccEEEEecCCCCCcc-eEecCCCC-CCCCCceEEEEe
Confidence 43 333333 345889999986555543 345789999998642 12 12111111 223346889999
Q ss_pred EEEeCCc
Q 041470 277 VSFTETQ 283 (394)
Q Consensus 277 ~~~~~~~ 283 (394)
|++....
T Consensus 422 c~i~~~~ 428 (539)
T PLN02995 422 SRILPAP 428 (539)
T ss_pred eEEecCC
Confidence 9998753
No 66
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.22 E-value=0.0099 Score=55.94 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=47.6
Q ss_pred CceeEE-eceecEEEEeEEEECCCC---CCCCCe-eeee-CcccEEEEeEEEecCCceEEeCCC--------CeeEEEEe
Q 041470 181 QMHIAF-ERSTNIEATNLTIMAPGN---SPNTDG-IHIQ-HSSNVSIAHSIISTGDDCVSIGDG--------SSHLNITN 246 (394)
Q Consensus 181 ~~~i~~-~~~~nv~i~~~~i~~~~~---~~n~DG-i~~~-~s~~v~I~n~~i~~gDD~iai~s~--------~~nV~i~n 246 (394)
...|.+ ...+|+-|+++++..... ....|| +|+. .+..|+|.+|.+...|-..-+++. -.+|++.+
T Consensus 144 ~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hh 223 (345)
T COG3866 144 YDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHH 223 (345)
T ss_pred CCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEec
Confidence 345555 556777777777776322 112344 3444 367788888888777666666552 24588888
Q ss_pred eEecCC--ce--eEEee
Q 041470 247 IFCGPG--HG--ISIGS 259 (394)
Q Consensus 247 ~~~~~~--~g--i~iGs 259 (394)
|+|.+. ++ +++|.
T Consensus 224 NyFkn~~qR~PriRfG~ 240 (345)
T COG3866 224 NYFKNLYQRGPRIRFGM 240 (345)
T ss_pred cccccccccCCceEeeE
Confidence 888763 22 55553
No 67
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.22 E-value=0.023 Score=59.94 Aligned_cols=110 Identities=13% Similarity=0.045 Sum_probs=70.5
Q ss_pred ecccceEEeeeeEeCCCC----ceeEE-eceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCC
Q 041470 164 ANSNNVHIDDLTFEDSPQ----MHIAF-ERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDG 238 (394)
Q Consensus 164 ~~~~nv~I~~vti~ns~~----~~i~~-~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~ 238 (394)
...+++..+||+|+|... ..+.+ ...+...+.+|+|.... |-+.... ..-..++|+|...=|-|. |
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFIF---G 404 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQ-----DTLYAHS-HRQFYRDCTISGTIDFLF---G 404 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeecc-----chhccCC-CcEEEEeCEEEEeccEEe---c
Confidence 356889999999998753 23333 35789999999999843 3344333 456889999986555544 3
Q ss_pred CeeEEEEeeEecCC-----ceeEEeecCCcCCCCCEEEEEEEeEEEeCCc
Q 041470 239 SSHLNITNIFCGPG-----HGISIGSLGMKGRNEKVEFVHVNNVSFTETQ 283 (394)
Q Consensus 239 ~~nV~i~n~~~~~~-----~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~ 283 (394)
.....++||.+..- ..-.|--.++. ....-..+.|.||++....
T Consensus 405 ~a~avfq~C~I~~r~~~~~~~~~ITAqgr~-~~~~~tGfvf~~C~i~~~~ 453 (670)
T PLN02217 405 DAAAVFQNCTLLVRKPLLNQACPITAHGRK-DPRESTGFVLQGCTIVGEP 453 (670)
T ss_pred CceEEEEccEEEEccCCCCCceeEecCCCC-CCCCCceEEEEeeEEecCc
Confidence 45789999998632 11122112211 2233457889999998753
No 68
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.20 E-value=0.026 Score=59.07 Aligned_cols=183 Identities=16% Similarity=0.206 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEe
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFK 129 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~ 129 (394)
-|-..||+||+++....+..-+|+|.+| +|.-. +.+... | .+++|..+|.
T Consensus 285 G~f~TI~~Av~a~p~~~~~r~vI~ik~G-vY~E~-V~i~~~--k-~ni~l~Gdg~------------------------- 334 (587)
T PLN02313 285 GDFTTVAAAVAAAPEKSNKRFVIHIKAG-VYREN-VEVTKK--K-KNIMFLGDGR------------------------- 334 (587)
T ss_pred CCCccHHHHHHhccccCCceEEEEEeCc-eeEEE-EEeCCC--C-CeEEEEecCC-------------------------
Confidence 3567899999965543213458999999 99753 222211 1 2666665541
Q ss_pred eeeceEEEec-eEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCc----eeEE-eceecEEEEeEEEECCC
Q 041470 130 KFGGLFIRGV-GSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQM----HIAF-ERSTNIEATNLTIMAPG 203 (394)
Q Consensus 130 ~~~nv~I~G~-G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~----~i~~-~~~~nv~i~~~~i~~~~ 203 (394)
....|+|. ...||.. .|. ..-.....+++..+|++|+|.... .+.+ ..++...+.+|++....
T Consensus 335 --~~TiIt~~~~~~~g~~-t~~--------sat~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~Q 403 (587)
T PLN02313 335 --GKTIITGSRNVVDGST-TFH--------SATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQ 403 (587)
T ss_pred --CccEEEeCCcccCCCC-cee--------eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEeccc
Confidence 11122221 0111111 111 123334568899999999987542 3333 35789999999999843
Q ss_pred CCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC---ce--eEEeecCCcCCCCCEEEEEEEeEE
Q 041470 204 NSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG---HG--ISIGSLGMKGRNEKVEFVHVNNVS 278 (394)
Q Consensus 204 ~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~---~g--i~iGs~g~~~~~~~v~nI~i~n~~ 278 (394)
|-+...+ ..-..++|+|...=|-|. |...+.++||.+..- .| -.|--.|+. +...-..+.|.||+
T Consensus 404 -----DTLy~~~-~rq~y~~c~I~GtvDFIF---G~a~avfq~c~i~~r~~~~~~~~~iTAqgr~-~~~~~tG~v~~~c~ 473 (587)
T PLN02313 404 -----DTLYVHS-NRQFFVKCHITGTVDFIF---GNAAAVLQDCDINARRPNSGQKNMVTAQGRS-DPNQNTGIVIQNCR 473 (587)
T ss_pred -----chhccCC-CcEEEEeeEEeeccceec---cceeEEEEccEEEEecCCCCCcceEEecCCC-CCCCCceEEEEecE
Confidence 4444443 345889999997656554 446889999998631 11 112112211 23344678999999
Q ss_pred EeCCc
Q 041470 279 FTETQ 283 (394)
Q Consensus 279 ~~~~~ 283 (394)
+....
T Consensus 474 i~~~~ 478 (587)
T PLN02313 474 IGGTS 478 (587)
T ss_pred EecCC
Confidence 98754
No 69
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.19 E-value=0.027 Score=58.63 Aligned_cols=109 Identities=13% Similarity=0.091 Sum_probs=71.7
Q ss_pred EecccceEEeeeeEeCCCC----ceeEE-eceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCC
Q 041470 163 VANSNNVHIDDLTFEDSPQ----MHIAF-ERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGD 237 (394)
Q Consensus 163 ~~~~~nv~I~~vti~ns~~----~~i~~-~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s 237 (394)
....+++..+|++|+|... ..+.+ ..++...+.+|+|... .|-+.... ..-..++|+|...=|-|.
T Consensus 336 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFIF--- 406 (566)
T PLN02713 336 AVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAY-----QDTLYTHS-LRQFYRECDIYGTVDFIF--- 406 (566)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccC-----CcceEECC-CCEEEEeeEEecccceec---
Confidence 3456899999999999743 22333 3578899999999984 34455444 456899999986545443
Q ss_pred CCeeEEEEeeEecCC------ce-eEEeecCCcCCCCCEEEEEEEeEEEeCCc
Q 041470 238 GSSHLNITNIFCGPG------HG-ISIGSLGMKGRNEKVEFVHVNNVSFTETQ 283 (394)
Q Consensus 238 ~~~nV~i~n~~~~~~------~g-i~iGs~g~~~~~~~v~nI~i~n~~~~~~~ 283 (394)
|...+.++||.+... .| |.- .++. ....-..+.|.||++....
T Consensus 407 G~a~avfq~C~i~~~~~~~~~~~~iTA--q~r~-~~~~~~G~vf~~c~i~~~~ 456 (566)
T PLN02713 407 GNAAVVFQNCNLYPRLPMQGQFNTITA--QGRT-DPNQNTGTSIQNCTIKAAD 456 (566)
T ss_pred ccceEEEeccEEEEecCCCCCcceeee--cCCC-CCCCCCEEEEEcCEEecCC
Confidence 446889999998532 12 222 1111 2233457899999998653
No 70
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.13 E-value=0.034 Score=58.01 Aligned_cols=180 Identities=13% Similarity=0.112 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEee
Q 041470 51 DTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKK 130 (394)
Q Consensus 51 dt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~~ 130 (394)
+-.-||+||+++....+..-+|+|.+| +|.-. +.+... | .+++|..+|.
T Consensus 269 ~f~tI~~Av~a~p~~~~~~~vI~ik~G-vY~E~-V~i~~~--k-~~i~~~G~g~-------------------------- 317 (565)
T PLN02468 269 KYKTISEALKDVPEKSEKRTIIYVKKG-VYFEN-VRVEKK--K-WNVVMVGDGM-------------------------- 317 (565)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCC-ceEEE-EEecCC--C-CeEEEEecCC--------------------------
Confidence 457899999965543223458999999 99743 223211 1 2666655441
Q ss_pred eeceEEEece-EEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCCc----eeEE-eceecEEEEeEEEECCCC
Q 041470 131 FGGLFIRGVG-SINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQM----HIAF-ERSTNIEATNLTIMAPGN 204 (394)
Q Consensus 131 ~~nv~I~G~G-~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~~----~i~~-~~~~nv~i~~~~i~~~~~ 204 (394)
....|+|.. ..||. .-|. ..-.....+++..++++|+|.... .+.+ ..++...+.+|++....
T Consensus 318 -~~tiIt~~~~~~dg~--~t~~-------saT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q- 386 (565)
T PLN02468 318 -SKTIVSGSLNFVDGT--PTFS-------TATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQ- 386 (565)
T ss_pred -CCCEEEeCCccCCCC--Cccc-------eeeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEecc-
Confidence 011112110 01111 1111 122333568899999999987532 2333 35789999999999854
Q ss_pred CCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC------ce-eEEeecCCcCCCCCEEEEEEEeE
Q 041470 205 SPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG------HG-ISIGSLGMKGRNEKVEFVHVNNV 277 (394)
Q Consensus 205 ~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~------~g-i~iGs~g~~~~~~~v~nI~i~n~ 277 (394)
|-+...+ ..-..++|+|...=|-|. |...+.++||.+..- .+ |.- .++. +...-..+.|.||
T Consensus 387 ----DTLy~~~-~rq~y~~C~I~GtvDFIF---G~a~avfq~c~i~~~~~~~~~~~~iTA--~~r~-~~~~~~G~vf~~c 455 (565)
T PLN02468 387 ----DTLYAHA-QRQFYRECNIYGTVDFIF---GNSAVVFQNCNILPRRPMKGQQNTITA--QGRT-DPNQNTGISIQNC 455 (565)
T ss_pred ----chhccCC-CceEEEeeEEecccceee---ccceEEEeccEEEEecCCCCCCceEEe--cCCC-CCCCCceEEEEcc
Confidence 3344333 345789999986555443 446889999998531 12 222 1111 2234457899999
Q ss_pred EEeCCc
Q 041470 278 SFTETQ 283 (394)
Q Consensus 278 ~~~~~~ 283 (394)
++....
T Consensus 456 ~i~~~~ 461 (565)
T PLN02468 456 TILPLG 461 (565)
T ss_pred EEecCC
Confidence 998754
No 71
>PLN02314 pectinesterase
Probab=97.12 E-value=0.036 Score=58.13 Aligned_cols=182 Identities=15% Similarity=0.141 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEee
Q 041470 51 DTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFKK 130 (394)
Q Consensus 51 dt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~~ 130 (394)
|-.-||+||+++....+..-+|+|.+| +|.-. +.+... |. +++|..+|. ....|...
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G-~Y~E~-V~i~~~--k~-~i~l~G~g~-----------------~~tiIt~~- 345 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEG-TYVEN-VLLDKS--KW-NVMIYGDGK-----------------DKTIISGS- 345 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCc-eEEEE-EEecCC--Cc-eEEEEecCC-----------------CCcEEEec-
Confidence 466799999965443213447999999 99743 223211 22 666666541 00111110
Q ss_pred eeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC----ceeEE-eceecEEEEeEEEECCCCC
Q 041470 131 FGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ----MHIAF-ERSTNIEATNLTIMAPGNS 205 (394)
Q Consensus 131 ~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~----~~i~~-~~~~nv~i~~~~i~~~~~~ 205 (394)
.+. .||.. .+. . .-.....+++..+|++|+|... ..+.+ ...+...+.+|++....
T Consensus 346 -~~~-------~~g~~-t~~-------s-aT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~Q-- 406 (586)
T PLN02314 346 -LNF-------VDGTP-TFS-------T-ATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQ-- 406 (586)
T ss_pred -CCc-------CCCCC-ccc-------e-EEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEecc--
Confidence 111 11111 111 1 2333467889999999998743 22333 35788999999999843
Q ss_pred CCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC------ceeEEeecCCcCCCCCEEEEEEEeEEE
Q 041470 206 PNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG------HGISIGSLGMKGRNEKVEFVHVNNVSF 279 (394)
Q Consensus 206 ~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~------~gi~iGs~g~~~~~~~v~nI~i~n~~~ 279 (394)
|-+...+ ..-..++|+|...=|-|. |.....++||.+..- .+ .|--.++. +...-..+.|.||++
T Consensus 407 ---DTLy~~~-~rq~y~~C~I~GtvDFIF---G~a~avf~~c~i~~~~~~~~~~~-~iTA~~r~-~~~~~~G~vf~~c~i 477 (586)
T PLN02314 407 ---DTLYAHS-NRQFYRDCDITGTIDFIF---GNAAVVFQNCNIQPRQPLPNQFN-TITAQGKK-DPNQNTGISIQRCTI 477 (586)
T ss_pred ---chheeCC-CCEEEEeeEEEeccceec---cCceeeeeccEEEEecCCCCCCc-eEecCCCC-CCCCCCEEEEEeeEE
Confidence 4444443 346889999986545443 346889999998631 12 12111211 233445789999999
Q ss_pred eCCc
Q 041470 280 TETQ 283 (394)
Q Consensus 280 ~~~~ 283 (394)
....
T Consensus 478 ~~~~ 481 (586)
T PLN02314 478 SAFG 481 (586)
T ss_pred ecCC
Confidence 8854
No 72
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.08 E-value=0.069 Score=55.77 Aligned_cols=185 Identities=14% Similarity=0.167 Sum_probs=104.2
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccEEEe
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWIQFK 129 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i~~~ 129 (394)
-|-.-||+||+++....+..-+|+|.+| +|.-. +.+... |. +++|..+|. ....|...
T Consensus 269 G~f~TIq~Av~a~p~~~~~r~vI~Ik~G-vY~E~-V~i~~~--k~-~i~l~G~g~-----------------~~TiIt~~ 326 (572)
T PLN02990 269 GQYKTINEALNAVPKANQKPFVIYIKQG-VYNEK-VDVTKK--MT-HVTFIGDGP-----------------TKTKITGS 326 (572)
T ss_pred CCCcCHHHHHhhCcccCCceEEEEEeCc-eeEEE-EEecCC--CC-cEEEEecCC-----------------CceEEEec
Confidence 3566799999965443213457999999 99753 223211 22 677766541 00111110
Q ss_pred eeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC----ceeEE-eceecEEEEeEEEECCCC
Q 041470 130 KFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ----MHIAF-ERSTNIEATNLTIMAPGN 204 (394)
Q Consensus 130 ~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~----~~i~~-~~~~nv~i~~~~i~~~~~ 204 (394)
.+.. +|....+. ..-.....+++..+|++|+|... ..+.+ ..++...+.+|+|....
T Consensus 327 --~~~~-------~g~~~T~~--------saT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q- 388 (572)
T PLN02990 327 --LNFY-------IGKVKTYL--------TATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQ- 388 (572)
T ss_pred --cccC-------CCCcccee--------eeEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccc-
Confidence 1110 00000111 12233356889999999998853 22333 25788999999999843
Q ss_pred CCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC---ce--eEEeecCCcCCCCCEEEEEEEeEEE
Q 041470 205 SPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG---HG--ISIGSLGMKGRNEKVEFVHVNNVSF 279 (394)
Q Consensus 205 ~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~---~g--i~iGs~g~~~~~~~v~nI~i~n~~~ 279 (394)
|-+...+ ..-..++|+|...=|-|. |.....++||.+..- .| -.|--.++. ....-..+.|.||++
T Consensus 389 ----DTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~C~i 459 (572)
T PLN02990 389 ----DTLYVHS-HRQFFRDCTVSGTVDFIF---GDAKVVLQNCNIVVRKPMKGQSCMITAQGRS-DVRESTGLVLQNCHI 459 (572)
T ss_pred ----chhccCC-CcEEEEeeEEecccceEc---cCceEEEEccEEEEecCCCCCceEEEeCCCC-CCCCCceEEEEeeEE
Confidence 3344333 346779999986656544 345789999998531 11 122111111 223345788999999
Q ss_pred eCCc
Q 041470 280 TETQ 283 (394)
Q Consensus 280 ~~~~ 283 (394)
....
T Consensus 460 t~~~ 463 (572)
T PLN02990 460 TGEP 463 (572)
T ss_pred ecCc
Confidence 8754
No 73
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.00 E-value=0.077 Score=55.06 Aligned_cols=180 Identities=13% Similarity=0.134 Sum_probs=104.8
Q ss_pred chHHHHHHHHHHhhccCC---CCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCCCCCCcCCCCCCccccE
Q 041470 50 DDTQAFKDAWKATCKSSS---SSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRDPHAWNTCDGSKCRQWI 126 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~---gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~~~~~~~~~~~~~~~~i 126 (394)
-+-.-||+||+++....+ +.-+|+|.+| +|.-. +.+... | .+++|..+|
T Consensus 233 G~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G-~Y~E~-V~i~~~--k-~~i~l~G~g----------------------- 284 (538)
T PLN03043 233 DNFTTITDAIAAAPNNSKPEDGYFVIYAREG-YYEEY-VVVPKN--K-KNIMLIGDG----------------------- 284 (538)
T ss_pred CCCcCHHHHHHhccccCCCCcceEEEEEcCe-eeEEE-EEeCCC--C-CcEEEEecC-----------------------
Confidence 357789999985444210 1248999999 99743 222211 1 266665554
Q ss_pred EEeeeeceEEEece-EEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCCC----ceeEE-eceecEEEEeEEEE
Q 041470 127 QFKKFGGLFIRGVG-SINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSPQ----MHIAF-ERSTNIEATNLTIM 200 (394)
Q Consensus 127 ~~~~~~nv~I~G~G-~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~~----~~i~~-~~~~nv~i~~~~i~ 200 (394)
.....|+|.- ..|| |... ..+-.....+++..+|++|+|... ..+.+ ..++...+.+|+|.
T Consensus 285 ----~~~tiIt~~~~~~dg-----~~T~----~saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~ 351 (538)
T PLN03043 285 ----INKTIITGNHSVVDG-----WTTF----NSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFE 351 (538)
T ss_pred ----CCCeEEEeCCccCCC-----Cccc----cceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEe
Confidence 1112222210 1121 1111 113334466899999999999753 23333 35788999999999
Q ss_pred CCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC------ce-eEEeecCCcCCCCCEEEEE
Q 041470 201 APGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG------HG-ISIGSLGMKGRNEKVEFVH 273 (394)
Q Consensus 201 ~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~------~g-i~iGs~g~~~~~~~v~nI~ 273 (394)
... |-+...+ ..-..++|+|...=|-|. |.....++||.+..- .+ |.- .++. +...-..+.
T Consensus 352 gyQ-----DTLy~~~-~rq~y~~c~I~GtVDFIF---G~a~avfq~c~i~~r~~~~~~~~~iTA--~~r~-~~~~~tG~~ 419 (538)
T PLN03043 352 GYQ-----DTLYVHS-LRQFYRECDIYGTVDFIF---GNAAAIFQNCNLYARKPMANQKNAFTA--QGRT-DPNQNTGIS 419 (538)
T ss_pred ccC-----cccccCC-CcEEEEeeEEeeccceEe---ecceeeeeccEEEEecCCCCCCceEEe--cCCC-CCCCCceEE
Confidence 854 3344333 446889999986655543 345889999998541 12 332 1111 223345789
Q ss_pred EEeEEEeCC
Q 041470 274 VNNVSFTET 282 (394)
Q Consensus 274 i~n~~~~~~ 282 (394)
|.||++...
T Consensus 420 ~~~c~i~~~ 428 (538)
T PLN03043 420 IINCTIEAA 428 (538)
T ss_pred EEecEEecC
Confidence 999999875
No 74
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.70 E-value=0.21 Score=49.17 Aligned_cols=153 Identities=10% Similarity=0.100 Sum_probs=80.6
Q ss_pred EeeecCcCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCCCeeEee-cceeccCccccceEEEEEce-EEEccCCCCCC
Q 041470 37 DVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQ-PLTFSGEICKSNSITFQIDG-HLVAPRDPHAW 114 (394)
Q Consensus 37 nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~-~l~l~~~~~~s~~v~l~~~g-~l~~~~~~~~~ 114 (394)
.|+.|-..++. -+.+||+. -+.|.+-||.+|.+. ++.++ + ..+|...| +++.......
T Consensus 45 qvkt~~~~P~e------Dle~~I~~-------haKVaL~Pg~~Y~i~~~V~I~-----~-~cYIiGnGA~V~v~~~~~~- 104 (386)
T PF01696_consen 45 QVKTYWMEPGE------DLEEAIRQ-------HAKVALRPGAVYVIRKPVNIR-----S-CCYIIGNGATVRVNGPDRV- 104 (386)
T ss_pred eEEEEEcCCCc------CHHHHHHh-------cCEEEeCCCCEEEEeeeEEec-----c-eEEEECCCEEEEEeCCCCc-
Confidence 66777777633 35667763 346788778799985 78886 2 68888865 5544211000
Q ss_pred cCCCCCCccccEEEeeeeceEEEeceEEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCCC-CceeEEeceecEE
Q 041470 115 NTCDGSKCRQWIQFKKFGGLFIRGVGSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDSP-QMHIAFERSTNIE 193 (394)
Q Consensus 115 ~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns~-~~~i~~~~~~nv~ 193 (394)
+ |. +.-. .. .|. +....++++.|+.+...+ +.++.+....+++
T Consensus 105 ---------~-f~--------v~~~--------~~-------~P~---V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~ 148 (386)
T PF01696_consen 105 ---------A-FR--------VCMQ--------SM-------GPG---VVGMEGVTFVNIRFEGRDTFSGVVFHANTNTL 148 (386)
T ss_pred ---------e-EE--------EEcC--------CC-------CCe---EeeeeeeEEEEEEEecCCccceeEEEecceEE
Confidence 0 11 1110 00 021 122245566666665554 4555566666667
Q ss_pred EEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC
Q 041470 194 ATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG 252 (394)
Q Consensus 194 i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~ 252 (394)
|.+|.+.+. +...++. .....|++|.|..---||.-+ +...+.|++|+|..+
T Consensus 149 ~hgC~F~gf----~g~cl~~--~~~~~VrGC~F~~C~~gi~~~-~~~~lsVk~C~FekC 200 (386)
T PF01696_consen 149 FHGCSFFGF----HGTCLES--WAGGEVRGCTFYGCWKGIVSR-GKSKLSVKKCVFEKC 200 (386)
T ss_pred EEeeEEecC----cceeEEE--cCCcEEeeeEEEEEEEEeecC-CcceEEeeheeeehe
Confidence 777766653 2222332 245666666665432223222 244666666666654
No 75
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=95.11 E-value=1.2 Score=42.60 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=20.9
Q ss_pred chHHHHHHHHHHhhccCCC--CCEEEecCCCeeE
Q 041470 50 DDTQAFKDAWKATCKSSSS--SPTMHVPHDKSFK 81 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~g--g~~V~iP~G~tY~ 81 (394)
++-..||+|+|+|.... + .-.+.+-+| .|.
T Consensus 92 ~~f~TIQaAvdaA~~~~-~~kr~yI~vk~G-vY~ 123 (405)
T COG4677 92 VTFTTIQAAVDAAIIKR-TNKRQYIAVKAG-VYQ 123 (405)
T ss_pred cchHHHHHHHhhhcccC-CCceEEEEEccc-eec
Confidence 66778999999765543 3 235667889 885
No 76
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.81 E-value=0.15 Score=33.83 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=13.5
Q ss_pred eeeeeCcccEEEEeEEEecCCceEEeCC
Q 041470 210 GIHIQHSSNVSIAHSIISTGDDCVSIGD 237 (394)
Q Consensus 210 Gi~~~~s~~v~I~n~~i~~gDD~iai~s 237 (394)
||.++.+.+.+|+++.+....|+|.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~ 28 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD 28 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe
Confidence 3444444444455555544444554444
No 77
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.13 E-value=0.27 Score=32.65 Aligned_cols=41 Identities=32% Similarity=0.325 Sum_probs=31.8
Q ss_pred eeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEec
Q 041470 183 HIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIIST 228 (394)
Q Consensus 183 ~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~ 228 (394)
+|.+..+.+.+|++.++.. +.|||++..+++.+|+++.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 3667777777888888877 5678998888888888877763
No 78
>PLN02773 pectinesterase
Probab=92.00 E-value=7.7 Score=37.61 Aligned_cols=87 Identities=7% Similarity=0.081 Sum_probs=63.8
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcC
Q 041470 186 FERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKG 264 (394)
Q Consensus 186 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~ 264 (394)
...++++..+|++|.|..........-+. .+..+.+.+|.|...-|-+..+. ..-.++||++.+.-.+-+|.-
T Consensus 98 ~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~g---- 171 (317)
T PLN02773 98 IVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGNS---- 171 (317)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeecc----
Confidence 33578899999999986432222333333 35889999999998888888765 368999999998877777752
Q ss_pred CCCCEEEEEEEeEEEeCCce
Q 041470 265 RNEKVEFVHVNNVSFTETQN 284 (394)
Q Consensus 265 ~~~~v~nI~i~n~~~~~~~~ 284 (394)
...|++|++.....
T Consensus 172 ------~a~Fe~c~i~s~~~ 185 (317)
T PLN02773 172 ------TALLEHCHIHCKSA 185 (317)
T ss_pred ------EEEEEeeEEEEccC
Confidence 57899999976433
No 79
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=90.86 E-value=4.1 Score=39.43 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=7.2
Q ss_pred EEEeeeeceEEEe
Q 041470 126 IQFKKFGGLFIRG 138 (394)
Q Consensus 126 i~~~~~~nv~I~G 138 (394)
|++.+..++.|+|
T Consensus 123 i~l~~s~d~~i~~ 135 (408)
T COG3420 123 IYLHGSADVRIEG 135 (408)
T ss_pred EEEeccCceEEEe
Confidence 4444555666665
No 80
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=89.18 E-value=3 Score=39.36 Aligned_cols=113 Identities=15% Similarity=0.228 Sum_probs=59.6
Q ss_pred eEEEecccceEEeeeeEeCC-CC---------ceeEEeceecEEEEeEEEECCCCCCCC----CeeeeeCcccEEEEeEE
Q 041470 160 GLVVANSNNVHIDDLTFEDS-PQ---------MHIAFERSTNIEATNLTIMAPGNSPNT----DGIHIQHSSNVSIAHSI 225 (394)
Q Consensus 160 ~i~~~~~~nv~I~~vti~ns-~~---------~~i~~~~~~nv~i~~~~i~~~~~~~n~----DGi~~~~s~~v~I~n~~ 225 (394)
++++++.+++.|++++-+|- |. .++.+..|+|+.|+|+...+....--. .|=.+.--+|..+.+..
T Consensus 261 lvhvengkhfvirnvkaknitpdfskkagidnatvaiygcdnfvidni~mvnsagmligygvikg~ylsipqnfkln~i~ 340 (464)
T PRK10123 261 LIHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNFKLNNIQ 340 (464)
T ss_pred eEEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEEcccceEEeccccccccccEEEeeeeeccEecccccceeceEe
Confidence 77777778888887777653 11 246777888888888777664321000 11111223444555555
Q ss_pred EecC-----CceEEeCCC--CeeEEEEeeEecCCceeEEeecCCcCCCCCEEEEEEEeEEEeC
Q 041470 226 ISTG-----DDCVSIGDG--SSHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVNNVSFTE 281 (394)
Q Consensus 226 i~~g-----DD~iai~s~--~~nV~i~n~~~~~~~gi~iGs~g~~~~~~~v~nI~i~n~~~~~ 281 (394)
+++. --+|-|.|| ++-|-|.|..+... -+. -.....+...+|+.+..
T Consensus 341 ldn~~l~yklrgiqissgnatsfvaitn~~mkra-tle--------lhn~pqhlflrni~vmq 394 (464)
T PRK10123 341 LDNTHLAYKLRGIQISAGNAVSFVALTNIEMKRA-SLE--------LHNKPQHLFLRNINVMQ 394 (464)
T ss_pred ecccccceeeeeeEeccCCcceEEEEeeeehhhh-hhh--------hcCCchhhehhhhhhhh
Confidence 4432 124555554 45666666554321 011 12334566777776543
No 81
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=87.68 E-value=19 Score=35.80 Aligned_cols=87 Identities=9% Similarity=0.040 Sum_probs=60.9
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCC-ceeEEeecCCcC
Q 041470 186 FERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPG-HGISIGSLGMKG 264 (394)
Q Consensus 186 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~-~gi~iGs~g~~~ 264 (394)
+..-.+|++.|+++...+ ..-|+-+.+..++++.+|.|.+- -+.++.. .....|+.|+|.+. .|+.-
T Consensus 117 V~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf-~g~cl~~-~~~~~VrGC~F~~C~~gi~~------- 184 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGF-HGTCLES-WAGGEVRGCTFYGCWKGIVS------- 184 (386)
T ss_pred EeeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecC-cceeEEE-cCCcEEeeeEEEEEEEEeec-------
Confidence 455678999999998853 34577888889999999999852 1344444 24778999999765 34432
Q ss_pred CCCCEEEEEEEeEEEeCCceeE
Q 041470 265 RNEKVEFVHVNNVSFTETQNGV 286 (394)
Q Consensus 265 ~~~~v~nI~i~n~~~~~~~~gi 286 (394)
.+...+.|++|+|+.+.-||
T Consensus 185 --~~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 185 --RGKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred --CCcceEEeeheeeeheEEEE
Confidence 23456777777777766555
No 82
>PLN02480 Probable pectinesterase
Probab=86.24 E-value=8.9 Score=37.62 Aligned_cols=83 Identities=7% Similarity=0.033 Sum_probs=61.1
Q ss_pred ceecEEEEeEEEECCCC-----CCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecC
Q 041470 188 RSTNIEATNLTIMAPGN-----SPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLG 261 (394)
Q Consensus 188 ~~~nv~i~~~~i~~~~~-----~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g 261 (394)
..++++++|++|.+... .....++-+. .+.++.++||.|...-|-+-... ..-.++||++.+.-.+=+|.-
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~g- 206 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGRG- 206 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccce-
Confidence 45788999999998632 1123556653 47899999999998777776554 367999999988777767642
Q ss_pred CcCCCCCEEEEEEEeEEEeCC
Q 041470 262 MKGRNEKVEFVHVNNVSFTET 282 (394)
Q Consensus 262 ~~~~~~~v~nI~i~n~~~~~~ 282 (394)
...|+||++...
T Consensus 207 ---------~a~fe~C~i~s~ 218 (343)
T PLN02480 207 ---------RSIFHNCEIFVI 218 (343)
T ss_pred ---------eEEEEccEEEEe
Confidence 567999998753
No 83
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=84.63 E-value=27 Score=30.96 Aligned_cols=99 Identities=16% Similarity=0.058 Sum_probs=51.9
Q ss_pred cceEEeeeeEeCCCCceeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEec-CCc------eEEeCCCC
Q 041470 167 NNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIIST-GDD------CVSIGDGS 239 (394)
Q Consensus 167 ~nv~I~~vti~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~-gDD------~iai~s~~ 239 (394)
++++|.+-+|.+...++|.+..... + -+-...++|.|.+..|.. |-. +-.+.+|-
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~----------~--------ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF 63 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDG----------S--------YSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGF 63 (198)
T ss_pred CceEEecceeecccCceEEEEecCC----------C--------CCccccccEEEECcEeecCCcCCCCceeeeEEeccc
Confidence 5677888888888778877754310 0 000112355555554432 110 11223346
Q ss_pred eeEEEEeeEecCCceeEEeec---CCcCCCCCEEEEEEEeEEEeCCc
Q 041470 240 SHLNITNIFCGPGHGISIGSL---GMKGRNEKVEFVHVNNVSFTETQ 283 (394)
Q Consensus 240 ~nV~i~n~~~~~~~gi~iGs~---g~~~~~~~v~nI~i~n~~~~~~~ 283 (394)
.|.+|||++|.+.++.+|... +...-.+.---.+++|+.+.++.
T Consensus 64 ~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 64 YNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred cccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 788888888887654333221 10000122334778888888765
No 84
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=83.15 E-value=20 Score=37.05 Aligned_cols=108 Identities=12% Similarity=0.032 Sum_probs=71.0
Q ss_pred ecccceEEeeeeEeCCCCc----eeEE-eceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCC
Q 041470 164 ANSNNVHIDDLTFEDSPQM----HIAF-ERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDG 238 (394)
Q Consensus 164 ~~~~nv~I~~vti~ns~~~----~i~~-~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~ 238 (394)
...+++..+||+|+|.... .+.+ ...+...+.+|+|.... |-+.... ..-..++|+|...=|-|. |
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~Q-----DTLy~~~-~rqyy~~C~I~G~vDFIF---G 337 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQ-----DTLYAAA-LRQFYRECDIYGTIDFIF---G 337 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccc-----chheeCC-CcEEEEeeEEEeccceEe---c
Confidence 4568999999999988542 2333 25789999999999843 4444444 345889999996656554 3
Q ss_pred CeeEEEEeeEecCC------ce-eEEeecCCcCCCCCEEEEEEEeEEEeCCc
Q 041470 239 SSHLNITNIFCGPG------HG-ISIGSLGMKGRNEKVEFVHVNNVSFTETQ 283 (394)
Q Consensus 239 ~~nV~i~n~~~~~~------~g-i~iGs~g~~~~~~~v~nI~i~n~~~~~~~ 283 (394)
.....++||.+..- .+ |.- .++. ....-..+.|.||++....
T Consensus 338 ~a~avf~~C~i~~~~~~~~~~~~iTA--q~r~-~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 338 NAAAVFQNCYLFLRRPHGKSYNVILA--NGRS-DPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred ccceeecccEEEEecCCCCCceEEEe--cCCC-CCCCCceEEEEeeEEecCC
Confidence 35789999998531 11 221 1211 2233457899999998754
No 85
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=82.81 E-value=11 Score=39.62 Aligned_cols=83 Identities=10% Similarity=0.013 Sum_probs=61.2
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCC
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGR 265 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~ 265 (394)
...+++..+|++|.|.........+-+. .+..+.+.||.|...-|-+-..++ ...+++|++.+.-.+-+|..
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtVDFIFG~a----- 399 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSL--RQFYKSCRIQGNVDFIFGNS----- 399 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCC--ceEEEeeEEeecCCEEecCc-----
Confidence 4567899999999986543233444443 358899999999988888777663 56789999988877777652
Q ss_pred CCCEEEEEEEeEEEeC
Q 041470 266 NEKVEFVHVNNVSFTE 281 (394)
Q Consensus 266 ~~~v~nI~i~n~~~~~ 281 (394)
...|+||.+.-
T Consensus 400 -----~avfq~c~i~~ 410 (553)
T PLN02708 400 -----AAVFQDCAILI 410 (553)
T ss_pred -----eEEEEccEEEE
Confidence 57799999873
No 86
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=82.52 E-value=7.7 Score=37.34 Aligned_cols=82 Identities=10% Similarity=0.137 Sum_probs=53.7
Q ss_pred eceecEEEEeEEEECCCCCC--CCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcC
Q 041470 187 ERSTNIEATNLTIMAPGNSP--NTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKG 264 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~--n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~ 264 (394)
...+++.++|++|.+..... ..-.+.+. ..++.+.+|.|...-|-+-...+ ...++||++.+.-.+-+|.-
T Consensus 84 v~a~~f~~~nit~~Nt~g~~~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~~~~--r~y~~~c~IeG~vDFIfG~~---- 156 (298)
T PF01095_consen 84 VNADDFTAENITFENTAGPSGGQAVALRVS-GDRAAFYNCRFLGYQDTLYANGG--RQYFKNCYIEGNVDFIFGNG---- 156 (298)
T ss_dssp E-STT-EEEEEEEEEHCSGSG----SEEET--TSEEEEEEEEE-STT-EEE-SS--EEEEES-EEEESEEEEEESS----
T ss_pred ccccceeeeeeEEecCCCCcccceeeeeec-CCcEEEEEeEEccccceeeeccc--eeEEEeeEEEecCcEEECCe----
Confidence 35689999999998853221 22334433 57899999999988888877663 67999999998888888752
Q ss_pred CCCCEEEEEEEeEEEeC
Q 041470 265 RNEKVEFVHVNNVSFTE 281 (394)
Q Consensus 265 ~~~~v~nI~i~n~~~~~ 281 (394)
...|+||++..
T Consensus 157 ------~a~f~~c~i~~ 167 (298)
T PF01095_consen 157 ------TAVFENCTIHS 167 (298)
T ss_dssp ------EEEEES-EEEE
T ss_pred ------eEEeeeeEEEE
Confidence 45699999875
No 87
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=81.98 E-value=41 Score=30.72 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=44.7
Q ss_pred cceEEeeeeEeCCCCceeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcc-cEEEEeEEEecCCceEEeCCCCeeEEEE
Q 041470 167 NNVHIDDLTFEDSPQMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSS-NVSIAHSIISTGDDCVSIGDGSSHLNIT 245 (394)
Q Consensus 167 ~nv~I~~vti~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~-~v~I~n~~i~~gDD~iai~s~~~nV~i~ 245 (394)
+..+|+++.|-.+..-+||... +.+|+||....- ..|.+.+.+.. .++|.+.-.++.+|=|--..+.-.+.|.
T Consensus 61 ~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I~ 134 (215)
T PF03211_consen 61 DGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTIK 134 (215)
T ss_dssp TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEEE
T ss_pred CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEEE
Confidence 4556677766555556676665 566777766653 45666666555 6666666666666655555555566666
Q ss_pred eeE
Q 041470 246 NIF 248 (394)
Q Consensus 246 n~~ 248 (394)
|-+
T Consensus 135 nF~ 137 (215)
T PF03211_consen 135 NFY 137 (215)
T ss_dssp EEE
T ss_pred eEE
Confidence 633
No 88
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=81.70 E-value=8.2 Score=38.45 Aligned_cols=45 Identities=24% Similarity=0.325 Sum_probs=28.2
Q ss_pred eeEEEEeeEecCCceeEEeecCCcCCCCCEEEEEEEeEEEeCCceeEEEEEe
Q 041470 240 SHLNITNIFCGPGHGISIGSLGMKGRNEKVEFVHVNNVSFTETQNGVRIKTW 291 (394)
Q Consensus 240 ~nV~i~n~~~~~~~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~~~gi~ik~~ 291 (394)
.|-.|+|.....++|+.+|.-|+ .+.++||++++|. ..|+.+++.
T Consensus 311 tnHiidNi~~~~~lGVG~~~DG~---~~yvsni~~~d~~----g~G~~~~~~ 355 (549)
T PF09251_consen 311 TNHIIDNILVRGSLGVGIGMDGK---GGYVSNITVQDCA----GAGIFIRGT 355 (549)
T ss_dssp ---EEEEEEEES-SSESCEEECC---S-EEEEEEEES-S----SESEEEECC
T ss_pred hhhhhhhhheeccceeeeeecCC---CceEeeEEeeccc----CCceEEeec
Confidence 57889999999999988877663 4677777766653 356666654
No 89
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=80.02 E-value=15 Score=38.64 Aligned_cols=82 Identities=10% Similarity=0.022 Sum_probs=61.7
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCCC
Q 041470 188 RSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRN 266 (394)
Q Consensus 188 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~~ 266 (394)
..+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...++ .-.++||++.+.-.+-+|..
T Consensus 338 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a------ 409 (566)
T PLN02713 338 VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSL--RQFYRECDIYGTVDFIFGNA------ 409 (566)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCC--CEEEEeeEEecccceecccc------
Confidence 458899999999986543333444443 358899999999988888887763 56999999988877777652
Q ss_pred CCEEEEEEEeEEEeC
Q 041470 267 EKVEFVHVNNVSFTE 281 (394)
Q Consensus 267 ~~v~nI~i~n~~~~~ 281 (394)
.+.|+||.+..
T Consensus 410 ----~avfq~C~i~~ 420 (566)
T PLN02713 410 ----AVVFQNCNLYP 420 (566)
T ss_pred ----eEEEeccEEEE
Confidence 56799999864
No 90
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=79.96 E-value=13 Score=38.78 Aligned_cols=84 Identities=8% Similarity=0.001 Sum_probs=60.9
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcC
Q 041470 186 FERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKG 264 (394)
Q Consensus 186 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~ 264 (394)
....+++..+|++|.|.........+-+. ...++.+.+|.|...-|-+...++ .-.++||++.+.-.+-+|.-
T Consensus 315 ~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~--rqyy~~C~I~GtVDFIFG~a---- 388 (537)
T PLN02506 315 AVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSL--RQFYRECEIYGTIDFIFGNG---- 388 (537)
T ss_pred EEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCC--ceEEEeeEEecccceEccCc----
Confidence 45678899999999986543333444443 358899999999987787776653 56899999988777777652
Q ss_pred CCCCEEEEEEEeEEEeC
Q 041470 265 RNEKVEFVHVNNVSFTE 281 (394)
Q Consensus 265 ~~~~v~nI~i~n~~~~~ 281 (394)
...|+||++..
T Consensus 389 ------~avfq~C~i~~ 399 (537)
T PLN02506 389 ------AAVLQNCKIYT 399 (537)
T ss_pred ------eeEEeccEEEE
Confidence 46788888874
No 91
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=79.61 E-value=10 Score=35.36 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=46.5
Q ss_pred eEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecC--CceeEEeecC
Q 041470 184 IAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGP--GHGISIGSLG 261 (394)
Q Consensus 184 i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~--~~gi~iGs~g 261 (394)
+.+....+.+|++++|.++.. ...-|+.+.++ +.+|+||+|.. ..|+.+-...
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess------------------------~~tI~Nntf~~~~~~GI~v~g~~ 145 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNI-ARGTGIWIESS------------------------SPTIANNTFTNNGREGIFVTGTS 145 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCC-CcceEEEEecC------------------------CcEEEeeEEECCccccEEEEeee
Confidence 344445677788888887521 12334444443 44455555543 2455442110
Q ss_pred CcCCCCCEEEEEEEeEEEeCCceeEEEEEe
Q 041470 262 MKGRNEKVEFVHVNNVSFTETQNGVRIKTW 291 (394)
Q Consensus 262 ~~~~~~~v~nI~i~n~~~~~~~~gi~ik~~ 291 (394)
....+.++.|+++.+.....||.+...
T Consensus 146 ---~~~~i~~~vI~GN~~~~~~~Gi~i~~~ 172 (246)
T PF07602_consen 146 ---ANPGINGNVISGNSIYFNKTGISISDN 172 (246)
T ss_pred ---cCCcccceEeecceEEecCcCeEEEcc
Confidence 134677888999999988888887654
No 92
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=79.05 E-value=15 Score=33.55 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=52.3
Q ss_pred ecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEec-CCceEEeCCCCeeEEEEeeEecCCce--eEEeecCCcCCC
Q 041470 190 TNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIIST-GDDCVSIGDGSSHLNITNIFCGPGHG--ISIGSLGMKGRN 266 (394)
Q Consensus 190 ~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~-gDD~iai~s~~~nV~i~n~~~~~~~g--i~iGs~g~~~~~ 266 (394)
+..+++|+.|-. +..||||..+ +.+|+|+..+. +.|++.++.....++|.+.-..++.. |.. .
T Consensus 61 ~GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~--N------ 126 (215)
T PF03211_consen 61 DGATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQH--N------ 126 (215)
T ss_dssp TTEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE---------
T ss_pred CCCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEe--c------
Confidence 467899998865 3679999997 78999999874 89999999965577777655544432 332 1
Q ss_pred CCEEEEEEEeEEEeC
Q 041470 267 EKVEFVHVNNVSFTE 281 (394)
Q Consensus 267 ~~v~nI~i~n~~~~~ 281 (394)
.--.++|+|.+..+
T Consensus 127 -g~Gtv~I~nF~a~d 140 (215)
T PF03211_consen 127 -GGGTVTIKNFYAED 140 (215)
T ss_dssp -SSEEEEEEEEEEEE
T ss_pred -CceeEEEEeEEEcC
Confidence 11257777765553
No 93
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=78.17 E-value=20 Score=37.29 Aligned_cols=84 Identities=7% Similarity=0.045 Sum_probs=60.9
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcC
Q 041470 186 FERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKG 264 (394)
Q Consensus 186 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~ 264 (394)
....+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...++ .-.+++|++.+.-.+-+|..
T Consensus 309 ~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a---- 382 (529)
T PLN02170 309 AAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSK--RQFYRETDITGTVDFIFGNS---- 382 (529)
T ss_pred EEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCCC--CEEEEeeEEccccceecccc----
Confidence 44568899999999986433233344443 357899999999988888777663 56889999998877777642
Q ss_pred CCCCEEEEEEEeEEEeC
Q 041470 265 RNEKVEFVHVNNVSFTE 281 (394)
Q Consensus 265 ~~~~v~nI~i~n~~~~~ 281 (394)
...|+||.+..
T Consensus 383 ------~avFq~C~I~~ 393 (529)
T PLN02170 383 ------AVVFQSCNIAA 393 (529)
T ss_pred ------eEEEeccEEEE
Confidence 46788888865
No 94
>PLN02916 pectinesterase family protein
Probab=77.70 E-value=22 Score=36.80 Aligned_cols=83 Identities=8% Similarity=-0.001 Sum_probs=61.8
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCC
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGR 265 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~ 265 (394)
...+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...++ .-.+++|++.+.-.+-+|..
T Consensus 274 v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a----- 346 (502)
T PLN02916 274 VSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL--RQFYRDCHIYGTIDFIFGDA----- 346 (502)
T ss_pred EECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC--CEEEEecEEecccceeccCc-----
Confidence 4557888999999886543333444443 358899999999988888887763 56889999998877777652
Q ss_pred CCCEEEEEEEeEEEeC
Q 041470 266 NEKVEFVHVNNVSFTE 281 (394)
Q Consensus 266 ~~~v~nI~i~n~~~~~ 281 (394)
...|+||.+.-
T Consensus 347 -----~avFq~C~I~~ 357 (502)
T PLN02916 347 -----AVVFQNCDIFV 357 (502)
T ss_pred -----eEEEecCEEEE
Confidence 56789998864
No 95
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=77.60 E-value=17 Score=37.96 Aligned_cols=83 Identities=8% Similarity=0.076 Sum_probs=58.1
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCC
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGR 265 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~ 265 (394)
...+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...++ .-.++||++.+.-.+-+|.-
T Consensus 320 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a----- 392 (548)
T PLN02301 320 AVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSL--RQFYRDSYITGTVDFIFGNA----- 392 (548)
T ss_pred EECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCC--cEEEEeeEEEeccceecccc-----
Confidence 3567888888888886432233344443 357888999999887787777663 45889999988767766642
Q ss_pred CCCEEEEEEEeEEEeC
Q 041470 266 NEKVEFVHVNNVSFTE 281 (394)
Q Consensus 266 ~~~v~nI~i~n~~~~~ 281 (394)
...|+||.+.-
T Consensus 393 -----~avfq~c~i~~ 403 (548)
T PLN02301 393 -----AVVFQNCKIVA 403 (548)
T ss_pred -----eeEEeccEEEE
Confidence 56788888864
No 96
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=77.60 E-value=18 Score=38.12 Aligned_cols=83 Identities=6% Similarity=-0.027 Sum_probs=58.3
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCC
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGR 265 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~ 265 (394)
...+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...+ ..-.++||++.+.-.+-+|..
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~a----- 414 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGNS----- 414 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeeccc-----
Confidence 3457888999999886433233344443 35778889999988777776665 356789999988777777652
Q ss_pred CCCEEEEEEEeEEEeC
Q 041470 266 NEKVEFVHVNNVSFTE 281 (394)
Q Consensus 266 ~~~v~nI~i~n~~~~~ 281 (394)
...|+||.+.-
T Consensus 415 -----~avfq~c~i~~ 425 (565)
T PLN02468 415 -----AVVFQNCNILP 425 (565)
T ss_pred -----eEEEeccEEEE
Confidence 56788888864
No 97
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=77.49 E-value=15 Score=38.39 Aligned_cols=83 Identities=10% Similarity=0.057 Sum_probs=55.7
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCC
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGR 265 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~ 265 (394)
...+++..+|++|.|.........+-+. .+..+.+.+|.|...-|-+...+ ....+++|++.+.-.+-+|..
T Consensus 314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a----- 386 (541)
T PLN02416 314 VSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGNA----- 386 (541)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeeccc-----
Confidence 3467888888888876443233334333 35778888888887777766655 355888888887766666542
Q ss_pred CCCEEEEEEEeEEEeC
Q 041470 266 NEKVEFVHVNNVSFTE 281 (394)
Q Consensus 266 ~~~v~nI~i~n~~~~~ 281 (394)
...|+||++..
T Consensus 387 -----~avfq~c~i~~ 397 (541)
T PLN02416 387 -----AVVFQACNIVS 397 (541)
T ss_pred -----eEEEeccEEEE
Confidence 56688888754
No 98
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=77.37 E-value=25 Score=36.60 Aligned_cols=83 Identities=7% Similarity=0.004 Sum_probs=58.4
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCC
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGR 265 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~ 265 (394)
...+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...++ .-.++||++.+.-.+-+|..
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a----- 362 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTM--RQFYRECRITGTVDFIFGDA----- 362 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCC--CEEEEeeEEeecccEEecCc-----
Confidence 4567888888888886433233444443 357788899999887787777653 45778899988777777642
Q ss_pred CCCEEEEEEEeEEEeC
Q 041470 266 NEKVEFVHVNNVSFTE 281 (394)
Q Consensus 266 ~~~v~nI~i~n~~~~~ 281 (394)
...|+||++..
T Consensus 363 -----~avf~~C~i~~ 373 (520)
T PLN02201 363 -----TAVFQNCQILA 373 (520)
T ss_pred -----eEEEEccEEEE
Confidence 56788888865
No 99
>PLN02682 pectinesterase family protein
Probab=77.22 E-value=27 Score=34.60 Aligned_cols=84 Identities=7% Similarity=0.033 Sum_probs=60.9
Q ss_pred EeceecEEEEeEEEECCCCC-----CCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEee
Q 041470 186 FERSTNIEATNLTIMAPGNS-----PNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGS 259 (394)
Q Consensus 186 ~~~~~nv~i~~~~i~~~~~~-----~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs 259 (394)
....+++..+|++|.|.... .....+-+. ....+.+.+|.|...-|-+.... ..-.++||++.+.-.+-+|.
T Consensus 159 ~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG~ 236 (369)
T PLN02682 159 AVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHL--GRHYFKDCYIEGSVDFIFGN 236 (369)
T ss_pred EEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECC--CCEEEEeeEEcccccEEecC
Confidence 34567899999999986421 112233332 36889999999998888877665 36799999999887777764
Q ss_pred cCCcCCCCCEEEEEEEeEEEeC
Q 041470 260 LGMKGRNEKVEFVHVNNVSFTE 281 (394)
Q Consensus 260 ~g~~~~~~~v~nI~i~n~~~~~ 281 (394)
- ...|++|++..
T Consensus 237 g----------~a~Fe~C~I~s 248 (369)
T PLN02682 237 G----------LSLYEGCHLHA 248 (369)
T ss_pred c----------eEEEEccEEEE
Confidence 2 56799999875
No 100
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=76.97 E-value=21 Score=37.27 Aligned_cols=84 Identities=6% Similarity=-0.006 Sum_probs=61.7
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcC
Q 041470 186 FERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKG 264 (394)
Q Consensus 186 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~ 264 (394)
....+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...++ .-.++||++.+.-.+-+|..
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~--rq~y~~c~I~GtVDFIFG~a---- 382 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSL--RQFYRECDIYGTVDFIFGNA---- 382 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCC--cEEEEeeEEeeccceEeecc----
Confidence 34568899999999986543333444443 357799999999988888777663 57999999988877777652
Q ss_pred CCCCEEEEEEEeEEEeC
Q 041470 265 RNEKVEFVHVNNVSFTE 281 (394)
Q Consensus 265 ~~~~v~nI~i~n~~~~~ 281 (394)
...|+||++.-
T Consensus 383 ------~avfq~c~i~~ 393 (538)
T PLN03043 383 ------AAIFQNCNLYA 393 (538)
T ss_pred ------eeeeeccEEEE
Confidence 56788988864
No 101
>PLN02665 pectinesterase family protein
Probab=76.73 E-value=83 Score=31.23 Aligned_cols=86 Identities=10% Similarity=0.063 Sum_probs=60.8
Q ss_pred EeceecEEEEeEEEECCCCC-----CCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEee
Q 041470 186 FERSTNIEATNLTIMAPGNS-----PNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGS 259 (394)
Q Consensus 186 ~~~~~nv~i~~~~i~~~~~~-----~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs 259 (394)
...++++..+|++|.|.... .+...+-+. ......+.||.+...-|-+....+ .-.++||++.+.-.+-+|.
T Consensus 150 ~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~g--r~yf~~CyIeG~VDFIFG~ 227 (366)
T PLN02665 150 IVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDKG--RHFFKDCYIEGTVDFIFGS 227 (366)
T ss_pred EEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCCC--CEEEEeeEEeeccceeccc
Confidence 34578899999999986421 111233332 358899999999988888776653 6789999999887777765
Q ss_pred cCCcCCCCCEEEEEEEeEEEeCCc
Q 041470 260 LGMKGRNEKVEFVHVNNVSFTETQ 283 (394)
Q Consensus 260 ~g~~~~~~~v~nI~i~n~~~~~~~ 283 (394)
- ...|+||++....
T Consensus 228 g----------~a~fe~C~i~s~~ 241 (366)
T PLN02665 228 G----------KSLYLNTELHVVG 241 (366)
T ss_pred c----------ceeeEccEEEEec
Confidence 2 4568889887543
No 102
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=76.52 E-value=21 Score=37.74 Aligned_cols=83 Identities=7% Similarity=0.004 Sum_probs=57.9
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCC
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGR 265 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~ 265 (394)
...+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...+ ..-.++||++.+.-.+-+|.-
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a----- 441 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGDA----- 441 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecce-----
Confidence 3567888888888886432223334443 35788899999988777776655 357889999988766766642
Q ss_pred CCCEEEEEEEeEEEeC
Q 041470 266 NEKVEFVHVNNVSFTE 281 (394)
Q Consensus 266 ~~~v~nI~i~n~~~~~ 281 (394)
...|+||.+.-
T Consensus 442 -----~avf~~C~i~~ 452 (596)
T PLN02745 442 -----AAIFQNCLIFV 452 (596)
T ss_pred -----eEEEEecEEEE
Confidence 56788888864
No 103
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=76.46 E-value=24 Score=36.43 Aligned_cols=83 Identities=6% Similarity=0.014 Sum_probs=61.1
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCC
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGR 265 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~ 265 (394)
...+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~a----- 353 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGNA----- 353 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecce-----
Confidence 3467888899999886543333445554 35889999999998778777665 367999999988877777652
Q ss_pred CCCEEEEEEEeEEEeC
Q 041470 266 NEKVEFVHVNNVSFTE 281 (394)
Q Consensus 266 ~~~v~nI~i~n~~~~~ 281 (394)
...|+||++..
T Consensus 354 -----~avFq~C~I~s 364 (509)
T PLN02488 354 -----AAVFQFCQIVA 364 (509)
T ss_pred -----EEEEEccEEEE
Confidence 57799999875
No 104
>PLN02197 pectinesterase
Probab=75.70 E-value=22 Score=37.56 Aligned_cols=83 Identities=12% Similarity=0.110 Sum_probs=58.8
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCC
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGR 265 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~ 265 (394)
...+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...++ .-.++||++.+.-.+-+|..
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a----- 433 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG--RQFYRNIVVSGTVDFIFGKS----- 433 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC--CEEEEeeEEEecccccccce-----
Confidence 4567888899999886433233444443 357889999999987787777663 55889999988766666542
Q ss_pred CCCEEEEEEEeEEEeC
Q 041470 266 NEKVEFVHVNNVSFTE 281 (394)
Q Consensus 266 ~~~v~nI~i~n~~~~~ 281 (394)
...|+||++.-
T Consensus 434 -----~avfq~C~i~~ 444 (588)
T PLN02197 434 -----ATVIQNSLIVV 444 (588)
T ss_pred -----eeeeecCEEEE
Confidence 36788888763
No 105
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=74.93 E-value=17 Score=38.92 Aligned_cols=82 Identities=9% Similarity=0.023 Sum_probs=60.5
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCCC
Q 041470 188 RSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRN 266 (394)
Q Consensus 188 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~~ 266 (394)
..+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...+ ..-++++|++.+.-.+-+|.-
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------ 406 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGDA------ 406 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecCc------
Confidence 467889999999986543333445544 36889999999998778777665 367999999988777777642
Q ss_pred CCEEEEEEEeEEEeC
Q 041470 267 EKVEFVHVNNVSFTE 281 (394)
Q Consensus 267 ~~v~nI~i~n~~~~~ 281 (394)
...|+||.+..
T Consensus 407 ----~avfq~C~I~~ 417 (670)
T PLN02217 407 ----AAVFQNCTLLV 417 (670)
T ss_pred ----eEEEEccEEEE
Confidence 46688888864
No 106
>PLN02432 putative pectinesterase
Probab=74.76 E-value=31 Score=33.15 Aligned_cols=81 Identities=10% Similarity=0.079 Sum_probs=59.8
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCCC
Q 041470 188 RSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRN 266 (394)
Q Consensus 188 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~~ 266 (394)
..+++.++|++|.+... +....+-+. ....+.+.+|.|...-|.+-...+ .-.++||++.+.-.+-+|.-
T Consensus 92 ~a~~f~a~nlt~~Nt~g-~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~g--r~yf~~c~I~G~VDFIFG~g------ 162 (293)
T PLN02432 92 LASDFVGRFLTIQNTFG-SSGKAVALRVAGDRAAFYGCRILSYQDTLLDDTG--RHYYRNCYIEGATDFICGNA------ 162 (293)
T ss_pred ECCCeEEEeeEEEeCCC-CCCceEEEEEcCCcEEEEcceEecccceeEECCC--CEEEEeCEEEecccEEecCc------
Confidence 45789999999998642 222344443 358899999999988888776653 67999999998877777652
Q ss_pred CCEEEEEEEeEEEeC
Q 041470 267 EKVEFVHVNNVSFTE 281 (394)
Q Consensus 267 ~~v~nI~i~n~~~~~ 281 (394)
...|++|.+..
T Consensus 163 ----~a~Fe~c~i~s 173 (293)
T PLN02432 163 ----ASLFEKCHLHS 173 (293)
T ss_pred ----eEEEEeeEEEE
Confidence 46799999864
No 107
>PLN02176 putative pectinesterase
Probab=74.71 E-value=26 Score=34.38 Aligned_cols=82 Identities=15% Similarity=0.111 Sum_probs=60.1
Q ss_pred ceecEEEEeEEEECCCCC------CCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeec
Q 041470 188 RSTNIEATNLTIMAPGNS------PNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSL 260 (394)
Q Consensus 188 ~~~nv~i~~~~i~~~~~~------~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~ 260 (394)
.++++..+|++|.|.... .....+-+. ......+.+|.|...-|-+.... ..-.++||++.+.-.+-+|.-
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~--gRqyf~~CyIeG~VDFIFG~a 197 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGK--GRHYYKRCVISGGIDFIFGYA 197 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeCC--cCEEEEecEEEecccEEecCc
Confidence 578999999999986421 112333333 35889999999998878777665 368999999998877777642
Q ss_pred CCcCCCCCEEEEEEEeEEEeC
Q 041470 261 GMKGRNEKVEFVHVNNVSFTE 281 (394)
Q Consensus 261 g~~~~~~~v~nI~i~n~~~~~ 281 (394)
...|+||++..
T Consensus 198 ----------~a~Fe~C~I~s 208 (340)
T PLN02176 198 ----------QSIFEGCTLKL 208 (340)
T ss_pred ----------eEEEeccEEEE
Confidence 56799999874
No 108
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=74.57 E-value=15 Score=36.92 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=43.2
Q ss_pred eEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEEec-C----CceEEeCCCCeeEEEEeeEecCC------
Q 041470 184 IAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSIIST-G----DDCVSIGDGSSHLNITNIFCGPG------ 252 (394)
Q Consensus 184 i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i~~-g----DD~iai~s~~~nV~i~n~~~~~~------ 252 (394)
|....|.| +|++-+|.... -++.+-...+-+|++..|.. + ..+|-|-. ++=+|.|+++.+.
T Consensus 218 ISvKS~~N-~ir~Ntf~es~-----G~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~--~~H~I~nNY~~gl~g~~~~ 289 (425)
T PF14592_consen 218 ISVKSSDN-TIRNNTFRESQ-----GSLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIG--EGHTIYNNYFEGLTGTRFR 289 (425)
T ss_dssp EEEESBT--EEES-EEES-S-----SEEEEEE-SS-EEES-EEEE-SSSS-B--EEE-S--BS-EEES-EEEESSB-TTT
T ss_pred EEeecCCc-eEeccEEEecc-----ceEEEecCCCceEeccEEecCCCcCCCCceEEec--CCcEEEcceeeccccceee
Confidence 33444444 45555555421 24555444555666555542 2 23555554 4556666666532
Q ss_pred ceeEE--eecCCc-CCCCCEEEEEEEeEEEeCCceeEEEEE
Q 041470 253 HGISI--GSLGMK-GRNEKVEFVHVNNVSFTETQNGVRIKT 290 (394)
Q Consensus 253 ~gi~i--Gs~g~~-~~~~~v~nI~i~n~~~~~~~~gi~ik~ 290 (394)
.++.+ |..... .....++|++|.++++.++..+|.+..
T Consensus 290 ~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~~i~~g~ 330 (425)
T PF14592_consen 290 GALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKSPIHFGA 330 (425)
T ss_dssp TSEE-EEE--BSTTSTT---BSEEEES-EEES-SEEEESST
T ss_pred cceeeccCCCCCCcccccccceeEEecceEEccCCceEEcc
Confidence 23443 211110 135678899999999999887777755
No 109
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=74.40 E-value=20 Score=37.02 Aligned_cols=83 Identities=8% Similarity=-0.021 Sum_probs=61.2
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCC
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGR 265 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~ 265 (394)
...+++..+|++|.|.........+-+. ....+.+.+|.|...-|-+...++ .-.++||++.+.-.+-+|..
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIFG~a----- 339 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIFGNA----- 339 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEeccc-----
Confidence 4568899999999986433233444443 368899999999988888777763 46899999998777777652
Q ss_pred CCCEEEEEEEeEEEeC
Q 041470 266 NEKVEFVHVNNVSFTE 281 (394)
Q Consensus 266 ~~~v~nI~i~n~~~~~ 281 (394)
...|+||++..
T Consensus 340 -----~avf~~C~i~~ 350 (497)
T PLN02698 340 -----AAVFQNCYLFL 350 (497)
T ss_pred -----ceeecccEEEE
Confidence 45789999864
No 110
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=74.13 E-value=27 Score=36.37 Aligned_cols=83 Identities=8% Similarity=0.061 Sum_probs=56.5
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCC
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGR 265 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~ 265 (394)
...+++..+|++|.|.........+-+. .+..+.+.+|.|...-|-+...++ .-.+++|++.+.-.+-+|..
T Consensus 302 v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~IeGtVDFIFG~a----- 374 (530)
T PLN02933 302 VKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA--KQFYRECDIYGTIDFIFGNA----- 374 (530)
T ss_pred EECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC--ceEEEeeEEecccceeccCc-----
Confidence 3457888888888886432233444443 357788888888877777766653 45888888888767766642
Q ss_pred CCCEEEEEEEeEEEeC
Q 041470 266 NEKVEFVHVNNVSFTE 281 (394)
Q Consensus 266 ~~~v~nI~i~n~~~~~ 281 (394)
...|+||.+.-
T Consensus 375 -----~avFq~C~i~~ 385 (530)
T PLN02933 375 -----AVVFQNCSLYA 385 (530)
T ss_pred -----eEEEeccEEEE
Confidence 45688888754
No 111
>PLN02304 probable pectinesterase
Probab=73.97 E-value=43 Score=33.31 Aligned_cols=84 Identities=11% Similarity=0.096 Sum_probs=60.4
Q ss_pred eceecEEEEeEEEECCCCC-----CCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeec
Q 041470 187 ERSTNIEATNLTIMAPGNS-----PNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSL 260 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~-----~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~ 260 (394)
...+++..+|++|.|.... .....+-+. .+..+.+.+|.|...-|-+....+ .-.++||++.+.-.+-+|.-
T Consensus 159 v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~g--R~Yf~~CyIeG~VDFIFG~g 236 (379)
T PLN02304 159 VFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDRG--RHYFKDCYIQGSIDFIFGDA 236 (379)
T ss_pred EECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCCC--CEEEEeeEEcccccEEeccc
Confidence 3468888999999885421 122334443 368899999999988788776653 67899999998877777652
Q ss_pred CCcCCCCCEEEEEEEeEEEeCC
Q 041470 261 GMKGRNEKVEFVHVNNVSFTET 282 (394)
Q Consensus 261 g~~~~~~~v~nI~i~n~~~~~~ 282 (394)
...|+||.+...
T Consensus 237 ----------~A~Fe~C~I~s~ 248 (379)
T PLN02304 237 ----------RSLYENCRLISM 248 (379)
T ss_pred ----------eEEEEccEEEEe
Confidence 467999998753
No 112
>PLN02634 probable pectinesterase
Probab=73.94 E-value=64 Score=31.91 Aligned_cols=83 Identities=5% Similarity=0.025 Sum_probs=58.8
Q ss_pred ceecEEEEeEEEECCCCC-----CCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecC
Q 041470 188 RSTNIEATNLTIMAPGNS-----PNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLG 261 (394)
Q Consensus 188 ~~~nv~i~~~~i~~~~~~-----~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g 261 (394)
..+++..+|++|.|.... .+...+-+. ......+.+|.|...-|-+.... ..-.++||++.+.-.+-+|.-
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~--gR~yf~~CyIeG~VDFIFG~g- 223 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDA--GRHYFKECYIEGSIDFIFGNG- 223 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeCC--CCEEEEeeEEcccccEEcCCc-
Confidence 457888888888875321 122333333 35889999999998878877665 368999999998877777642
Q ss_pred CcCCCCCEEEEEEEeEEEeCC
Q 041470 262 MKGRNEKVEFVHVNNVSFTET 282 (394)
Q Consensus 262 ~~~~~~~v~nI~i~n~~~~~~ 282 (394)
...|+||++...
T Consensus 224 ---------~a~Fe~C~I~s~ 235 (359)
T PLN02634 224 ---------RSMYKDCELHSI 235 (359)
T ss_pred ---------eEEEeccEEEEe
Confidence 456899998753
No 113
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=73.64 E-value=33 Score=30.41 Aligned_cols=47 Identities=11% Similarity=0.134 Sum_probs=31.0
Q ss_pred CeeEEEEeeEecCC---ceeE-EeecCCcCCCCCEEEEEEEeEEEeCCce-eEEEE
Q 041470 239 SSHLNITNIFCGPG---HGIS-IGSLGMKGRNEKVEFVHVNNVSFTETQN-GVRIK 289 (394)
Q Consensus 239 ~~nV~i~n~~~~~~---~gi~-iGs~g~~~~~~~v~nI~i~n~~~~~~~~-gi~ik 289 (394)
.+||+|.++.|+.+ ..+. +|.. ...+..|.+|||+.|.+... ||.-+
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGI----v~sGF~ntlIENNVfDG~y~aai~~~ 84 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGI----VTSGFYNTLIENNVFDGVYHAAIAQM 84 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeE----EeccccccEEEeeeecccccceEEEE
Confidence 57999999999863 1111 1211 23467899999999998754 55543
No 114
>PLN02314 pectinesterase
Probab=73.32 E-value=25 Score=37.24 Aligned_cols=83 Identities=7% Similarity=0.041 Sum_probs=56.8
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCC
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGR 265 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~ 265 (394)
...+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...++ .-.++||++.+.-.+-+|..
T Consensus 362 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~a----- 434 (586)
T PLN02314 362 AAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSN--RQFYRDCDITGTIDFIFGNA----- 434 (586)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCC--CEEEEeeEEEeccceeccCc-----
Confidence 3567888888888886432223334443 357788889988887777766653 46888898887766666642
Q ss_pred CCCEEEEEEEeEEEeC
Q 041470 266 NEKVEFVHVNNVSFTE 281 (394)
Q Consensus 266 ~~~v~nI~i~n~~~~~ 281 (394)
...|+||.+.-
T Consensus 435 -----~avf~~c~i~~ 445 (586)
T PLN02314 435 -----AVVFQNCNIQP 445 (586)
T ss_pred -----eeeeeccEEEE
Confidence 46688888863
No 115
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=73.28 E-value=22 Score=37.53 Aligned_cols=83 Identities=10% Similarity=0.053 Sum_probs=56.0
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCC
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGR 265 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~ 265 (394)
...+++..+|++|.|.........+-+. ......+.+|.|...-|-+...++ .-+++||++.+.-.+-+|..
T Consensus 357 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a----- 429 (587)
T PLN02484 357 ATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSN--RQFFRECDIYGTVDFIFGNA----- 429 (587)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCC--cEEEEecEEEeccceecccc-----
Confidence 3457788888888876432223344443 357788888888877777666653 56888888887766666542
Q ss_pred CCCEEEEEEEeEEEeC
Q 041470 266 NEKVEFVHVNNVSFTE 281 (394)
Q Consensus 266 ~~~v~nI~i~n~~~~~ 281 (394)
...|+||.+.-
T Consensus 430 -----~avfq~C~i~~ 440 (587)
T PLN02484 430 -----AVVLQNCSIYA 440 (587)
T ss_pred -----eeEEeccEEEE
Confidence 46688888864
No 116
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=73.19 E-value=26 Score=36.95 Aligned_cols=82 Identities=9% Similarity=0.100 Sum_probs=55.8
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCCC
Q 041470 188 RSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRN 266 (394)
Q Consensus 188 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~~ 266 (394)
..+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...+ ..-.+++|++.+.-.+-+|..
T Consensus 345 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------ 416 (572)
T PLN02990 345 NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGDA------ 416 (572)
T ss_pred EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccCc------
Confidence 457788888888876432233444443 35778888888887777766665 356788888887766666542
Q ss_pred CCEEEEEEEeEEEeC
Q 041470 267 EKVEFVHVNNVSFTE 281 (394)
Q Consensus 267 ~~v~nI~i~n~~~~~ 281 (394)
...|+||++.-
T Consensus 417 ----~avf~~C~i~~ 427 (572)
T PLN02990 417 ----KVVLQNCNIVV 427 (572)
T ss_pred ----eEEEEccEEEE
Confidence 46688888864
No 117
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=72.73 E-value=40 Score=34.06 Aligned_cols=88 Identities=16% Similarity=0.213 Sum_probs=61.4
Q ss_pred EEeceecEEEEeEEEECCCCC----CCCCeeeee-CcccEEEEeEEEecCCceEEeCCC----------CeeEEEEeeEe
Q 041470 185 AFERSTNIEATNLTIMAPGNS----PNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDG----------SSHLNITNIFC 249 (394)
Q Consensus 185 ~~~~~~nv~i~~~~i~~~~~~----~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~----------~~nV~i~n~~~ 249 (394)
.....+++..+|++|.+.... .+...+-+. ....+.+.+|.|...-|-+...+. ...-.++||++
T Consensus 201 v~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyI 280 (422)
T PRK10531 201 FWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYI 280 (422)
T ss_pred EEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEE
Confidence 345678999999999986421 122233332 358899999999987787776321 23689999999
Q ss_pred cCCceeEEeecCCcCCCCCEEEEEEEeEEEeCC
Q 041470 250 GPGHGISIGSLGMKGRNEKVEFVHVNNVSFTET 282 (394)
Q Consensus 250 ~~~~gi~iGs~g~~~~~~~v~nI~i~n~~~~~~ 282 (394)
.+.-.+-+|.- ...|+||++...
T Consensus 281 eG~VDFIFG~g----------~AvFenC~I~s~ 303 (422)
T PRK10531 281 EGDVDFVFGRG----------AVVFDNTEFRVV 303 (422)
T ss_pred eecccEEccCc----------eEEEEcCEEEEe
Confidence 88777777652 567999988653
No 118
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=72.12 E-value=23 Score=37.47 Aligned_cols=83 Identities=6% Similarity=0.057 Sum_probs=55.4
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCC
Q 041470 187 ERSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGR 265 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~ 265 (394)
...+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...++ .-.+++|++.+.-.+-+|..
T Consensus 359 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~--rq~y~~c~I~GtvDFIFG~a----- 431 (587)
T PLN02313 359 AVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN--RQFFVKCHITGTVDFIFGNA----- 431 (587)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC--cEEEEeeEEeeccceeccce-----
Confidence 3456788888888876432223333333 357788888888877777766653 45888888887766666542
Q ss_pred CCCEEEEEEEeEEEeC
Q 041470 266 NEKVEFVHVNNVSFTE 281 (394)
Q Consensus 266 ~~~v~nI~i~n~~~~~ 281 (394)
...|+||++.-
T Consensus 432 -----~avfq~c~i~~ 442 (587)
T PLN02313 432 -----AAVLQDCDINA 442 (587)
T ss_pred -----eEEEEccEEEE
Confidence 56788888864
No 119
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=71.31 E-value=27 Score=36.47 Aligned_cols=82 Identities=9% Similarity=0.044 Sum_probs=52.0
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecCCcCCC
Q 041470 188 RSTNIEATNLTIMAPGNSPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLGMKGRN 266 (394)
Q Consensus 188 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g~~~~~ 266 (394)
..+++..+|++|.|.........+-+. .+....+.+|.|...-|-+...++ .-.++||++.+.-.+-+|.-
T Consensus 310 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a------ 381 (539)
T PLN02995 310 EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQ--RQFYRECYIYGTVDFIFGNA------ 381 (539)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCCC--ceEEEeeEEeeccceEeccc------
Confidence 456777778888775432223344443 256778888888776666665542 45788888877666666542
Q ss_pred CCEEEEEEEeEEEeC
Q 041470 267 EKVEFVHVNNVSFTE 281 (394)
Q Consensus 267 ~~v~nI~i~n~~~~~ 281 (394)
...|+||++..
T Consensus 382 ----~avf~~C~i~~ 392 (539)
T PLN02995 382 ----AAVFQNCIILP 392 (539)
T ss_pred ----ceEEeccEEEE
Confidence 45677777754
No 120
>PLN02671 pectinesterase
Probab=69.71 E-value=43 Score=33.13 Aligned_cols=84 Identities=10% Similarity=0.043 Sum_probs=58.3
Q ss_pred eceecEEEEeEEEECCCC----CCCCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEeecC
Q 041470 187 ERSTNIEATNLTIMAPGN----SPNTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIGSLG 261 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~----~~n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iGs~g 261 (394)
...+++..+|++|.|... .......-+. ....+.+.+|.|...-|-+-...+ .-.++||++.+.-.+-+|.-
T Consensus 151 v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~g--R~yf~~CyIeG~VDFIFG~g- 227 (359)
T PLN02671 151 IESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDETG--SHYFYQCYIQGSVDFIFGNA- 227 (359)
T ss_pred EECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEeCCC--cEEEEecEEEEeccEEecce-
Confidence 345778888888887521 1122333332 358899999999987777766553 56999999988777767642
Q ss_pred CcCCCCCEEEEEEEeEEEeCC
Q 041470 262 MKGRNEKVEFVHVNNVSFTET 282 (394)
Q Consensus 262 ~~~~~~~v~nI~i~n~~~~~~ 282 (394)
...|+||++...
T Consensus 228 ---------~A~Fe~C~I~s~ 239 (359)
T PLN02671 228 ---------KSLYQDCVIQST 239 (359)
T ss_pred ---------eEEEeccEEEEe
Confidence 467999998753
No 121
>PLN02497 probable pectinesterase
Probab=68.62 E-value=40 Score=32.96 Aligned_cols=83 Identities=10% Similarity=-0.007 Sum_probs=59.0
Q ss_pred eceecEEEEeEEEECCCCCC-------CCCeeeee-CcccEEEEeEEEecCCceEEeCCCCeeEEEEeeEecCCceeEEe
Q 041470 187 ERSTNIEATNLTIMAPGNSP-------NTDGIHIQ-HSSNVSIAHSIISTGDDCVSIGDGSSHLNITNIFCGPGHGISIG 258 (394)
Q Consensus 187 ~~~~nv~i~~~~i~~~~~~~-------n~DGi~~~-~s~~v~I~n~~i~~gDD~iai~s~~~nV~i~n~~~~~~~gi~iG 258 (394)
...+++..+|++|.|....+ ....+-+. ....+.+.+|.|...-|-+-... ..-.++||++.+.-.+-+|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG 189 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSD--GRHYFKRCTIQGAVDFIFG 189 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeCC--CcEEEEeCEEEecccEEcc
Confidence 34678999999999864311 11233332 35889999999998878776555 3679999999887777776
Q ss_pred ecCCcCCCCCEEEEEEEeEEEeC
Q 041470 259 SLGMKGRNEKVEFVHVNNVSFTE 281 (394)
Q Consensus 259 s~g~~~~~~~v~nI~i~n~~~~~ 281 (394)
.- ...|+||++..
T Consensus 190 ~g----------~a~Fe~C~I~s 202 (331)
T PLN02497 190 SG----------QSIYESCVIQV 202 (331)
T ss_pred Cc----------eEEEEccEEEE
Confidence 42 56789998874
No 122
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=59.73 E-value=8.8 Score=21.16 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=14.3
Q ss_pred EEEEEeEEEeCCce-eEEEEE
Q 041470 271 FVHVNNVSFTETQN-GVRIKT 290 (394)
Q Consensus 271 nI~i~n~~~~~~~~-gi~ik~ 290 (394)
+++|+++++.+... ||.+..
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~~ 23 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIGG 23 (26)
T ss_pred CEEEECCEEEeCCCCcEEEec
Confidence 57778888877665 777654
No 123
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=53.66 E-value=13 Score=25.95 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=13.6
Q ss_pred CcchhhHHHHHHh-hhhhcc
Q 041470 1 MANYVAVLFLLLS-TQCFLS 19 (394)
Q Consensus 1 m~~~~~~~~~~~~-~~~~~~ 19 (394)
||+++++|+|+.+ ...|++
T Consensus 1 mknllkillilafa~pvfas 20 (65)
T PF10880_consen 1 MKNLLKILLILAFASPVFAS 20 (65)
T ss_pred ChhHHHHHHHHHHhhhHhhh
Confidence 8999998888776 334443
No 124
>TIGR03524 GldJ gliding motility-associated lipoprotein GldJ. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldJ is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldJ abolish the gliding phenotype. GldJ is homologous to GldK. There is a GldJ homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=52.45 E-value=22 Score=36.86 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=35.9
Q ss_pred CcchhhHHHHHHhhhhhccccc-cCCCCCCCCCCceEEeeecCcCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCCCe
Q 041470 1 MANYVAVLFLLLSTQCFLSAHC-RHLPSNQGAIGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKS 79 (394)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~t 79 (394)
||..++++|++++++.+.++.- ........+.+-.+|.+.-|..- .+-++ -... +.+.|.||+| +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~s~~tgw~~n~~~g~~~~----------~~~~~--~q~~-~p~MV~IPGG-~ 68 (559)
T TIGR03524 3 MKNVFKITFIVFVSLLFVSCKKKSSSSNKSRATGWSFNDKNGNYIR----------NNSFK--GQEA-PPGLVFVEGG-T 68 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCccccccccceecccCCccee----------ccccc--cCCC-CCceEEECCc-E
Confidence 6667777777776655555432 11111122333445543333211 01011 1111 4678999999 9
Q ss_pred eEeec
Q 041470 80 FKLQP 84 (394)
Q Consensus 80 Y~~~~ 84 (394)
|.+|.
T Consensus 69 F~MGs 73 (559)
T TIGR03524 69 FTMGQ 73 (559)
T ss_pred EEeCC
Confidence 99984
No 125
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=50.87 E-value=1.3e+02 Score=24.28 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=43.6
Q ss_pred ecccceEEeeeeEeCCC---CceeEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEe-EEEecCCceEE
Q 041470 164 ANSNNVHIDDLTFEDSP---QMHIAFERSTNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAH-SIISTGDDCVS 234 (394)
Q Consensus 164 ~~~~nv~I~~vti~ns~---~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n-~~i~~gDD~ia 234 (394)
..+.+..+++-.+.+.. .+++.+..+.+..+.+-++. .. .. .+|++++...+..+.+ ..+....|++.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 55666777777666653 77888877666655555554 11 12 6888888877777777 45555555554
No 126
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=47.77 E-value=13 Score=31.78 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=20.7
Q ss_pred CcchhhHHHHHHhhhhhccccccCCCCCCCCCCceEEeeecC
Q 041470 1 MANYVAVLFLLLSTQCFLSAHCRHLPSNQGAIGDAFDVLNYG 42 (394)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~dfG 42 (394)
||++.+++++++++....+++...+.++. ..+.|.|+|
T Consensus 1 Mkk~~l~~~~~~~~p~~~~AHnlq~~q~v----p~VgV~~~G 38 (184)
T COG3054 1 MKKRKLLALLCLLLPMMASAHNLQLGQRV----PPVGVADRG 38 (184)
T ss_pred CchhhHHHHHHHHhHHHHHHhhcccCCcC----CCccccccc
Confidence 88887766665555555555544333322 234556655
No 127
>PF15284 PAGK: Phage-encoded virulence factor
Probab=43.01 E-value=10 Score=26.98 Aligned_cols=16 Identities=13% Similarity=0.335 Sum_probs=10.3
Q ss_pred CcchhhHHHHHHhhhh
Q 041470 1 MANYVAVLFLLLSTQC 16 (394)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (394)
||+...++|++++++.
T Consensus 1 Mkk~ksifL~l~~~Ls 16 (61)
T PF15284_consen 1 MKKFKSIFLALVFILS 16 (61)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 8887666666555444
No 128
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=39.95 E-value=1.8e+02 Score=23.42 Aligned_cols=36 Identities=11% Similarity=0.002 Sum_probs=15.8
Q ss_pred ecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEeEEE
Q 041470 190 TNIEATNLTIMAPGNSPNTDGIHIQHSSNVSIAHSII 226 (394)
Q Consensus 190 ~nv~i~~~~i~~~~~~~n~DGi~~~~s~~v~I~n~~i 226 (394)
.+..+++..+..... .+..|+++..+.+..+.+..+
T Consensus 76 ~~~~i~~N~~~~~~~-~~~~Gi~~~~~~~~~~~~N~i 111 (146)
T smart00722 76 GKNLIIDNVTINGTE-GSGAGIVVTAGSEGLFIGNRI 111 (146)
T ss_pred cccEEEcceecCCCc-cceEEEEEECCccceEecCeE
Confidence 344444444443211 235566666544444444433
No 129
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=38.45 E-value=1.2e+02 Score=29.56 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=8.5
Q ss_pred EEEeeEecCCceeEEee
Q 041470 243 NITNIFCGPGHGISIGS 259 (394)
Q Consensus 243 ~i~n~~~~~~~gi~iGs 259 (394)
+++||++.+.-.+-+|+
T Consensus 257 yftNsyI~GdvDfIfGs 273 (405)
T COG4677 257 YFTNSYIEGDVDFIFGS 273 (405)
T ss_pred heecceecccceEEecc
Confidence 45555555544444443
No 130
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=36.28 E-value=57 Score=27.25 Aligned_cols=11 Identities=9% Similarity=0.374 Sum_probs=7.8
Q ss_pred hHHHHHHHHHH
Q 041470 51 DTQAFKDAWKA 61 (394)
Q Consensus 51 dt~Aiq~Ai~~ 61 (394)
+...+++|+++
T Consensus 22 ~~~~~~~af~~ 32 (131)
T PF11948_consen 22 SDTCLQQAFEN 32 (131)
T ss_pred chHHHHHHHHh
Confidence 33488999974
No 131
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=36.02 E-value=41 Score=23.53 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=12.8
Q ss_pred CcchhhHHHHHHhhhhhcc
Q 041470 1 MANYVAVLFLLLSTQCFLS 19 (394)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (394)
||+.++.+++++.++.+++
T Consensus 1 mk~~~~s~~ala~l~sLA~ 19 (58)
T COG5567 1 MKNVFKSLLALATLFSLAG 19 (58)
T ss_pred ChhHHHHHHHHHHHHHHHh
Confidence 8998887777666653333
No 132
>TIGR03119 one_C_fhcD formylmethanofuran--tetrahydromethanopterin N-formyltransferase. Members of this protein family are the FhcD protein of tetrahydromethanopterin (H4MPT)-dependent C-1 carrier metabolism. In the archaea, FhcD is designated formylmethanofuran--tetrahydromethanopterin N-formyltransferase, while in bacteria it is commonly designated as formyltransferase/hydrolase complex subunit D. FhcD is essential for one-carbon metabolism in at least three groups of prokaryotes: methanogenic archaea, sulfate-reducing archaea, and methylotrophic bacteria.
Probab=32.69 E-value=53 Score=30.97 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=29.5
Q ss_pred CCCCCcch--HHHHHHHHHHhhccCCCCCEEEecCCCee--Eeecce
Q 041470 44 AGDGHTDD--TQAFKDAWKATCKSSSSSPTMHVPHDKSF--KLQPLT 86 (394)
Q Consensus 44 ~gdg~tdd--t~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY--~~~~l~ 86 (394)
+=||.+.+ .+|.++.|++||.. .+.+.|.+| .| .+++-+
T Consensus 239 VIdGl~~~aV~~Amr~Gi~Aa~~~---~Gv~~IsAG-NYGGkLG~~~ 281 (287)
T TIGR03119 239 VIDGLNEAAIAEAMRVGILAATEI---PGVVKITAG-NYGGKLGPHH 281 (287)
T ss_pred EEcCCCHHHHHHHHHHHHHHHhcC---CCeEEEecC-ccCCCCCcce
Confidence 34676666 78889999988863 679999999 79 666543
No 133
>TIGR02001 gcw_chp conserved hypothetical protein, proteobacterial. This model represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis, Ralstonia solanacearum, and Colwellia psychrerythraea, usually as part of a paralogous family. The function is unknown.
Probab=31.60 E-value=21 Score=33.23 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=17.8
Q ss_pred eecCcCCCCCcchHHHHHHHHHH
Q 041470 39 LNYGAAGDGHTDDTQAFKDAWKA 61 (394)
Q Consensus 39 ~dfGA~gdg~tddt~Aiq~Ai~~ 61 (394)
.||=-+|=.++++.+|||-.++.
T Consensus 42 SdY~~RGisqt~~~pavQg~~~~ 64 (243)
T TIGR02001 42 SDYVFRGVSQTNSDPAIQGGLDY 64 (243)
T ss_pred EeeEEeCcccCCCCcEEEeEEEE
Confidence 37878887778888888877763
No 134
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=30.55 E-value=73 Score=26.81 Aligned_cols=39 Identities=10% Similarity=0.215 Sum_probs=32.2
Q ss_pred EEeCCCccccccCCCCCceeEEEecccceEEeeeeEeCC
Q 041470 141 SINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFEDS 179 (394)
Q Consensus 141 ~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ns 179 (394)
++|++...||...+...|+.+.+...+.+.|+-+.+.-.
T Consensus 24 L~D~~~~tyWQSdG~qgpH~I~l~f~~~v~i~~l~i~v~ 62 (134)
T cd08666 24 LTDGDPDTYWESDGSQGQHWIRLHMKKGTIIKKLLLTVD 62 (134)
T ss_pred hccCCCCccEecCCCCCCeEEEEEECCCcEeeEEEEEec
Confidence 688899999987766668999999899999988887643
No 135
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=29.36 E-value=59 Score=26.42 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=21.5
Q ss_pred CcchhhHHHHHHhhhhhccccccCCCCCCCCCCceEEeeecCcCCC
Q 041470 1 MANYVAVLFLLLSTQCFLSAHCRHLPSNQGAIGDAFDVLNYGAAGD 46 (394)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~dfGA~gd 46 (394)
||+.++.++++++++......+. .+.-.+.....+-+...|+.-+
T Consensus 1 mKK~li~li~~ivv~~~~~~~~~-~~~~~~~~nyyvki~~~~~~~~ 45 (114)
T TIGR01655 1 MKKGLAILLALIVVITIVGIEIS-HPVYSDRFNYYIKIKNDYKEVP 45 (114)
T ss_pred CceehHHHHHHHHhHHHhhheee-ccccCCccccEEEEeeCCEEEe
Confidence 89977655444443332222221 1211222445667777777643
No 136
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=29.02 E-value=84 Score=26.33 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=30.9
Q ss_pred EEeCCCccccccCCCCCceeEEEecccceEEeeeeEe
Q 041470 141 SINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFE 177 (394)
Q Consensus 141 ~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ 177 (394)
+.|++-..||...+..+|+.|.+.-.+.+.|+-+.+.
T Consensus 19 L~D~~~~tyWQSdG~q~pH~I~i~f~k~v~I~~l~i~ 55 (131)
T cd08665 19 LTDGNPKTYWESNGSTGSHYINIHMHRGVVIRQLYML 55 (131)
T ss_pred hhcCCCCceEccCCCCCCeEEEEEECCCcEEEEEEEE
Confidence 6788888899877666799999998899999888775
No 137
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=28.70 E-value=1.3e+02 Score=23.94 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=10.2
Q ss_pred cchHHHHHHHHHH
Q 041470 49 TDDTQAFKDAWKA 61 (394)
Q Consensus 49 tddt~Aiq~Ai~~ 61 (394)
.++...+++++++
T Consensus 45 ~~~~~~v~~~L~~ 57 (101)
T PF13721_consen 45 LPDAFQVEQALKA 57 (101)
T ss_pred CChHHHHHHHHHH
Confidence 4667799999985
No 138
>PRK09752 adhesin; Provisional
Probab=28.62 E-value=9.8e+02 Score=27.79 Aligned_cols=11 Identities=36% Similarity=0.761 Sum_probs=5.8
Q ss_pred EEEEEeEEEeC
Q 041470 271 FVHVNNVSFTE 281 (394)
Q Consensus 271 nI~i~n~~~~~ 281 (394)
++.|.|+.|.+
T Consensus 223 ~liI~NSsFtn 233 (1250)
T PRK09752 223 YTIINNTAFTN 233 (1250)
T ss_pred eEEEeccEEEc
Confidence 44555555554
No 139
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=28.60 E-value=86 Score=26.27 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=30.0
Q ss_pred EEeCCCccccccCCCCCceeEEEecccceEEeeeeEe
Q 041470 141 SINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFE 177 (394)
Q Consensus 141 ~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ 177 (394)
.+|++-..||...+...|+.+.+...+.+.|+-+.+.
T Consensus 19 L~D~~~~TYWQSDG~q~pH~I~i~f~~~v~i~~l~i~ 55 (131)
T cd08667 19 MTDGETSTYWQSDGSARSHWIRLKMKPDVVLRHLSIA 55 (131)
T ss_pred hhcCCCCccCccCCCCCCeEEEEEecCCeEEEEEEEE
Confidence 6788888999876655688888888888888887765
No 140
>CHL00132 psaF photosystem I subunit III; Validated
Probab=28.50 E-value=58 Score=28.61 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.0
Q ss_pred CcchhhHHHHHHhhhhhcc
Q 041470 1 MANYVAVLFLLLSTQCFLS 19 (394)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (394)
||+++.+++++++++.+..
T Consensus 1 mrrl~~l~l~~~l~~~~~p 19 (185)
T CHL00132 1 MKKFNLLFLLLAALLLFNP 19 (185)
T ss_pred ChhHHHHHHHHHHHHhcCC
Confidence 8988888888777777665
No 141
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=27.54 E-value=1.5e+02 Score=26.94 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=30.9
Q ss_pred CcchhhHHHHHHhhhhhccccccCCCCCCCCCCceEEeeecCcCCCCCcchHHHHHHHHHHhhccCCCCCEEEecCC
Q 041470 1 MANYVAVLFLLLSTQCFLSAHCRHLPSNQGAIGDAFDVLNYGAAGDGHTDDTQAFKDAWKATCKSSSSSPTMHVPHD 77 (394)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~dfGA~gdg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G 77 (394)
||+.++++++++|.|-.+ ..-+|.-||.-| -+|+-..-|....-. .|-.|.+-.|
T Consensus 1 Mk~~~~i~~~~~La~s~~---------------~~adinlYGpGG----PhtaL~~vA~~~~ek---tg~kVnvt~G 55 (252)
T COG4588 1 MKKAVLILLIFLLAFSSA---------------ANADINLYGPGG----PHTALKDVAKKYEEK---TGIKVNVTAG 55 (252)
T ss_pred CchhHHHHHHHHHHhhhh---------------hcceEEEecCCC----CcHHHHHHHHHHHHH---hCeEEEEecC
Confidence 888776666655543311 112566788876 455555555543333 4666777555
No 142
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=26.50 E-value=39 Score=24.82 Aligned_cols=16 Identities=25% Similarity=0.330 Sum_probs=10.9
Q ss_pred CcchhhHHHHHHhhhh
Q 041470 1 MANYVAVLFLLLSTQC 16 (394)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (394)
||++.-++++|++++.
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (92)
T TIGR02052 1 MKKLATLLALFVLTSL 16 (92)
T ss_pred ChhHHHHHHHHHHhcc
Confidence 8888777666665543
No 143
>PF02741 FTR_C: FTR, proximal lobe; InterPro: IPR002770 Formylmethanofuran:tetrahyromethanopterin formyltransferase (Ftr) is involved in C1 metabolism in methanogenic archaea, sulphate-reducing archaea and methylotrophic bacteria. It catalyses the following reversible reaction: N-formylmethanofuran + 5,6,7,8-tetrahydromethanopterin = methanofuran + 5-formyl-5,6,7,8-tetrahydromethanopterin Ftr from the thermophilic methanogen Methanopyrus kandleri (optimum growth temperature 98 degrees C) is a hyperthermophilic enzyme that is absolutely dependent on the presence of lyotropic salts for activity and thermostability. The crystal structure of Ftr, determined to a reveals a homotetramer composed essentially of two dimers. Each subunit is subdivided into two tightly associated lobes both consisting of a predominantly antiparallel beta sheet flanked by alpha helices forming an alpha/beta sandwich structure. The approximate location of the active site was detected in a region close to the dimer interface []. Ftr from the mesophilic methanogen Methanosarcina barkeri and the sulphate-reducing archaeon Archaeoglobus fulgidus have a similar structure []. In the methylotrophic bacterium Methylobacterium extorquens, Ftr interacts with three other polypeptides to form an Ftr/cyclohydrolase complex which catalyses the hydrolysis of formyl-tetrahydromethanopterin to formate during growth on C1 substrates [].; GO: 0016740 transferase activity, 0006730 one-carbon metabolic process; PDB: 1M5S_B 1M5H_E 1FTR_C 2FHJ_B 2FHK_D.
Probab=25.91 E-value=56 Score=27.79 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHhhccCCCCCEEEecCCCee--Eeecce
Q 041470 50 DDTQAFKDAWKATCKSSSSSPTMHVPHDKSF--KLQPLT 86 (394)
Q Consensus 50 ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY--~~~~l~ 86 (394)
.-.+|.++.|++||. ..+.+.|.+| .| .+++-+
T Consensus 110 av~~Amr~Gi~Aa~~---~~Gv~~IsAG-NYGGkLG~~~ 144 (150)
T PF02741_consen 110 AVAEAMRAGIEAACA---VPGVVRISAG-NYGGKLGPYH 144 (150)
T ss_dssp HHHHHHHHHHHHHTT---STTEEEEE----STTSSSSEE
T ss_pred HHHHHHHHHHHHHhc---CCCeEEEecC-CcCCccCcce
Confidence 336788888888886 4789999999 78 566543
No 144
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=24.85 E-value=95 Score=23.70 Aligned_cols=16 Identities=38% Similarity=0.291 Sum_probs=9.5
Q ss_pred CcchhhHHHHHHhhhh
Q 041470 1 MANYVAVLFLLLSTQC 16 (394)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (394)
|.|++.||-+|...|+
T Consensus 1 MaRRlwiLslLAVtLt 16 (100)
T PF05984_consen 1 MARRLWILSLLAVTLT 16 (100)
T ss_pred CchhhHHHHHHHHHHH
Confidence 7777766555554433
No 145
>PRK02114 formylmethanofuran--tetrahydromethanopterin formyltransferase; Provisional
Probab=24.60 E-value=90 Score=29.67 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=27.6
Q ss_pred CCCCc--chHHHHHHHHHHhhccCCCCCEEEecCCCee--Eeecce
Q 041470 45 GDGHT--DDTQAFKDAWKATCKSSSSSPTMHVPHDKSF--KLQPLT 86 (394)
Q Consensus 45 gdg~t--ddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY--~~~~l~ 86 (394)
=||.+ +-.+|.++.|++||. -.+.+.|.+| .| .+++-+
T Consensus 248 IdGl~~~aV~~Amr~Gi~Aa~~---~~Gv~~IsAG-NYGGkLG~~~ 289 (297)
T PRK02114 248 IDGLDEEAVAEAMRAGIEAACA---VPGVVKISAG-NYGGKLGPHH 289 (297)
T ss_pred EcCCCHHHHHHHHHHHHHHHhc---CCCeEEEecC-CCCCccCcee
Confidence 35554 336788889998886 3689999999 79 566543
No 146
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=24.33 E-value=30 Score=22.99 Aligned_cols=20 Identities=15% Similarity=0.286 Sum_probs=10.4
Q ss_pred CcchhhHHHHHHhhhhhcccc
Q 041470 1 MANYVAVLFLLLSTQCFLSAH 21 (394)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (394)
|||.+.++++++. +++.+.+
T Consensus 1 MkKi~~~~i~~~~-~~L~aCQ 20 (46)
T PF02402_consen 1 MKKIIFIGIFLLT-MLLAACQ 20 (46)
T ss_pred CcEEEEeHHHHHH-HHHHHhh
Confidence 8887664444443 3334443
No 147
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=22.01 E-value=2.4e+02 Score=25.74 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=15.1
Q ss_pred cchHHHHHHHHHHhhccCCCCCEEEecCCCee
Q 041470 49 TDDTQAFKDAWKATCKSSSSSPTMHVPHDKSF 80 (394)
Q Consensus 49 tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY 80 (394)
+|++.-.+..++ ..++|.+-.|+.|
T Consensus 45 tde~Smmn~Y~~-------kPAkv~VknGK~~ 69 (217)
T TIGR03656 45 NDSASMANDYFE-------KPAKLIVKNGKMT 69 (217)
T ss_pred CCchhhHHhhcc-------CCcEEEEECCEEE
Confidence 355555555554 3568888889433
No 148
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=21.92 E-value=52 Score=22.43 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=6.4
Q ss_pred CcchhhHHHHHH
Q 041470 1 MANYVAVLFLLL 12 (394)
Q Consensus 1 m~~~~~~~~~~~ 12 (394)
|||.+.++++++
T Consensus 2 mKk~i~~i~~~l 13 (48)
T PRK10081 2 VKKTIAAIFSVL 13 (48)
T ss_pred hHHHHHHHHHHH
Confidence 666665544433
No 149
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=21.60 E-value=2.9e+02 Score=22.58 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=21.6
Q ss_pred CCCEEEecCCCeeEeecceeccCccccceEEEEEceEEEccCC
Q 041470 68 SSPTMHVPHDKSFKLQPLTFSGEICKSNSITFQIDGHLVAPRD 110 (394)
Q Consensus 68 gg~~V~iP~G~tY~~~~l~l~~~~~~s~~v~l~~~g~l~~~~~ 110 (394)
.+..|+||+|.+.++..- .... ..+.+ +|+|.+..+
T Consensus 11 ~g~~V~I~~g~~v~lD~~-~~~l----~~l~I--~G~L~f~~~ 46 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVS-TPKL----GSLII--GGTLIFDDD 46 (125)
T ss_pred CCCEEEECCCCEEEEcCC-Chhe----eEEEE--EEEEEEccC
Confidence 478999999954454421 1111 13444 899998654
No 150
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=20.48 E-value=1.5e+02 Score=24.92 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=30.0
Q ss_pred eEEeCCCccccccCCCCCceeEEEecccceEEeeeeEe
Q 041470 140 GSINGQGSNWWKLSCKHDKIGLVVANSNNVHIDDLTFE 177 (394)
Q Consensus 140 G~idg~g~~~~~~~~~~~p~~i~~~~~~nv~I~~vti~ 177 (394)
-.+|++-..||...+...|+.+.+...+.+.|+-+.+.
T Consensus 19 ~L~D~~~~tyWQSDG~q~pH~I~i~f~k~v~i~~l~l~ 56 (131)
T cd08365 19 RLTDGNTSTYWQSDGSQGSHWIRLKMKPDVLVRHLSLA 56 (131)
T ss_pred HhhcCCCCceEccCCCCCCEEEEEEEcCCcEEEEEEEE
Confidence 36788888899876655578888888888888887775
No 151
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=20.21 E-value=88 Score=24.50 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=20.6
Q ss_pred eecCcCC-CCCcchHHHHHHHHHHhhccCCCCCEEEecCCCeeEee
Q 041470 39 LNYGAAG-DGHTDDTQAFKDAWKATCKSSSSSPTMHVPHDKSFKLQ 83 (394)
Q Consensus 39 ~dfGA~g-dg~tddt~Aiq~Ai~~a~~~~~gg~~V~iP~G~tY~~~ 83 (394)
.|||..+ +.....-..+++||..--. ...+ +..| ||+..
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi~---~~~t--v~~G-tYr~~ 49 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHIK---NPDT--VEKG-TYRRV 49 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHHH----TT---EE---BETTS
T ss_pred cccCcccCCCChhhHHHHHHHHHHHhC---CCCe--Eecc-ceecC
Confidence 5899988 5555666888999985334 2456 4489 99854
No 152
>TIGR00247 conserved hypothetical protein, YceG family. This uncharacterized protein family, found in three of four microbial genomes, virtually always once per genome, includes YceG from Escherichia coli. This protein is encoded next to PabC, 4-amino-4-deoxychorismate lyase, in E. coli and numerous other proteobacteria, but that proximity is not conserved in other lineages. Numerous members of this family have been misannotated as aminodeoxychorismate lyase, apparently because of promiximty to PabC.
Probab=20.03 E-value=1.9e+02 Score=28.37 Aligned_cols=11 Identities=9% Similarity=0.232 Sum_probs=8.6
Q ss_pred EecCCCeeEeec
Q 041470 73 HVPHDKSFKLQP 84 (394)
Q Consensus 73 ~iP~G~tY~~~~ 84 (394)
-|.+| +|.+.+
T Consensus 81 ~lkaG-~Y~l~~ 91 (342)
T TIGR00247 81 QFKAG-TYLLNG 91 (342)
T ss_pred cccce-EEEECC
Confidence 37899 999864
Done!