BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041473
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 143/495 (28%), Positives = 210/495 (42%), Gaps = 35/495 (7%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSF-GNLSSLEFLSAAVNQFVGQIPETL 60
N+ VG +P L L+ L++ N +GEIP G +L L + N F G +P
Sbjct: 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 61 SELKRMRSIGFGANKLSGEIPF-SIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLN 119
+ S+ +N SGE+P ++ + L +LD N+ G LP + +L L+
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 120 FGNNQFTGPI-PASISNASN-LMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGE 176
+N F+GPI P N N L L +Q NGF+GK+P +L N +L + S N+L
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-- 432
Query: 177 KDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSXXX 236
SSL + S+L +++ +N G +P+ + + T L+ + N L G IPS
Sbjct: 433 ----TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLS 487
Query: 237 XXXXXXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296
+ TG I IG L+ L L+L N F G IP+ +G+ L L
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 297 NRLEGSIPSSLGK-----CKXXXXXXXXXXXXTGTIPTEVIGLSSLSIYLDLSKNQLN-- 349
N G+IP+++ K + E G +L + + QLN
Sbjct: 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607
Query: 350 --------------GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNF 395
G F ++ LD+S N LSG IP +GS L L + N
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 396 FQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPIKGVFS 455
G+IP LRG+ LDLS N L GRIP+ S+N+ G +P G F
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
Query: 456 NSSAISLDGNDNLCG 470
N LCG
Sbjct: 728 TFPPAKFLNNPGLCG 742
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 130/448 (29%), Positives = 196/448 (43%), Gaps = 63/448 (14%)
Query: 17 KLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKL 76
+L+ LA+ N +SG++ S +LEFL + N F IP L + ++ + NKL
Sbjct: 179 ELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235
Query: 77 SGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNA 136
SG+ +I + L LL+ NQ G +P L +L+ L+ N+FTG IP +S A
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 137 SN-LMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMM 195
+ L L + N F G VP L ++ +GE + +L+ L+++
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP----MDTLLKMRGLKVL 348
Query: 196 EISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSXXXXXXXXXXXXXXXXQFTGRI 255
++S N F G LPES+ NLS L + +N F+G I
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNN------------------------FSGPI 384
Query: 256 LGSIGDLQK--LQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKXX 313
L ++ K LQ L L+ N F G+IP ++ N + L +L N L G+IPSSLG
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK- 443
Query: 314 XXXXXXXXXXTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373
L L ++L N L G +P +K L L + N L+
Sbjct: 444 --------------------LRDLKLWL----NMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFEXXXX 433
GEIP+ L +C L + ++ N G IP L + L LS N+ SG IP
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 434 XXXXXXSSNHFEGEVPIKGVFSNSSAIS 461
++N F G +P +F S I+
Sbjct: 540 LIWLDLNTNLFNGTIP-AAMFKQSGKIA 566
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 136/490 (27%), Positives = 211/490 (43%), Gaps = 71/490 (14%)
Query: 16 SKLRTLAVHFNNLSGEIPS--SFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGA 73
+ L +L + N+LSG + + S G+ S L+FL+ + N P
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFP---------------- 141
Query: 74 NKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPN----LEVLNFGNNQFTGPI 129
K+SG + L+SL +LD N + G+ + +G+ L + L+ L N+ +G +
Sbjct: 142 GKVSGGL-----KLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV 194
Query: 130 PASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNA 189
+S NL L + N FS +P L + LQ + S N L +F ++
Sbjct: 195 --DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG------DFSRAISTC 246
Query: 190 SRLEMMEISINNFGGMLP----ESVGNLSTRLKRFT------------------VGNNQL 227
+ L+++ IS N F G +P +S+ LS +FT + N
Sbjct: 247 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 228 FGNIPSXXXXXXXXXXXXXXXXQFTGRI-LGSIGDLQKLQRLRLKGNKFLGEIPSSVGNL 286
+G +P F+G + + ++ ++ L+ L L N+F GE+P S+ NL
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Query: 287 TL-LFTLSFEGNRLEGSIPSSLGKCKXXXXXXXXXXXX----TGTIPTEVIGLSSLSIYL 341
+ L TL N G I +L C+ TG IP + S L + L
Sbjct: 367 SASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL-VSL 423
Query: 342 DLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP 401
LS N L+G +PS+ G L L L + N L GEIP L LE L+++ N G IP
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483
Query: 402 SSFSSLRGIQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPIKGVFSNSSAIS 461
S S+ + + LS N L+G IPK+ S+N F G +P + + S I
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIW 542
Query: 462 LDGNDNLCGG 471
LD N NL G
Sbjct: 543 LDLNTNLFNG 552
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 144/321 (44%), Gaps = 43/321 (13%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN L G +P LGSLSKLR L + N L GEIP + +LE L N G+IP L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
S + I N+L+GEIP I L +L++L N G++P+++G +L L+
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDL 545
Query: 121 GNNQFTGPIPASISN-----ASNLM----RLTIQKNGFSGKVPSLENLYKLQRV-SFSLN 170
N F G IPA++ A+N + + I+ +G + NL + Q + S LN
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605
Query: 171 HLGNGEKDDL-------EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVG 223
L ++ + N + +++S N G +P+ +G++ L +G
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-PYLFILNLG 664
Query: 224 NNQLFGNIPSXXXXXXXXXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV 283
+N + G+IP +GDL+ L L L NK G IP ++
Sbjct: 665 HNDISGSIPD------------------------EVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 284 GNLTLLFTLSFEGNRLEGSIP 304
LT+L + N L G IP
Sbjct: 701 SALTMLTEIDLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 143/495 (28%), Positives = 210/495 (42%), Gaps = 35/495 (7%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSF-GNLSSLEFLSAAVNQFVGQIPETL 60
N+ VG +P L L+ L++ N +GEIP G +L L + N F G +P
Sbjct: 254 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 61 SELKRMRSIGFGANKLSGEIPF-SIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLN 119
+ S+ +N SGE+P ++ + L +LD N+ G LP + +L L+
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Query: 120 FGNNQFTGPI-PASISNASN-LMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGE 176
+N F+GPI P N N L L +Q NGF+GK+P +L N +L + S N+L
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-- 429
Query: 177 KDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSXXX 236
SSL + S+L +++ +N G +P+ + + T L+ + N L G IPS
Sbjct: 430 ----TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLS 484
Query: 237 XXXXXXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296
+ TG I IG L+ L L+L N F G IP+ +G+ L L
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 544
Query: 297 NRLEGSIPSSLGK-----CKXXXXXXXXXXXXTGTIPTEVIGLSSLSIYLDLSKNQLN-- 349
N G+IP+++ K + E G +L + + QLN
Sbjct: 545 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 604
Query: 350 --------------GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNF 395
G F ++ LD+S N LSG IP +GS L L + N
Sbjct: 605 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 664
Query: 396 FQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPIKGVFS 455
G+IP LRG+ LDLS N L GRIP+ S+N+ G +P G F
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
Query: 456 NSSAISLDGNDNLCG 470
N LCG
Sbjct: 725 TFPPAKFLNNPGLCG 739
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 130/448 (29%), Positives = 196/448 (43%), Gaps = 63/448 (14%)
Query: 17 KLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKL 76
+L+ LA+ N +SG++ S +LEFL + N F IP L + ++ + NKL
Sbjct: 176 ELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 232
Query: 77 SGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNA 136
SG+ +I + L LL+ NQ G +P L +L+ L+ N+FTG IP +S A
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 137 SN-LMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMM 195
+ L L + N F G VP L ++ +GE + +L+ L+++
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP----MDTLLKMRGLKVL 345
Query: 196 EISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSXXXXXXXXXXXXXXXXQFTGRI 255
++S N F G LPES+ NLS L + +N F+G I
Sbjct: 346 DLSFNEFSGELPESLTNLSASLLTLDLSSNN------------------------FSGPI 381
Query: 256 LGSIGDLQK--LQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKXX 313
L ++ K LQ L L+ N F G+IP ++ N + L +L N L G+IPSSLG
Sbjct: 382 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK- 440
Query: 314 XXXXXXXXXXTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373
L L ++L N L G +P +K L L + N L+
Sbjct: 441 --------------------LRDLKLWL----NMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFEXXXX 433
GEIP+ L +C L + ++ N G IP L + L LS N+ SG IP
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 434 XXXXXXSSNHFEGEVPIKGVFSNSSAIS 461
++N F G +P +F S I+
Sbjct: 537 LIWLDLNTNLFNGTIP-AAMFKQSGKIA 563
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 136/490 (27%), Positives = 211/490 (43%), Gaps = 71/490 (14%)
Query: 16 SKLRTLAVHFNNLSGEIPS--SFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGA 73
+ L +L + N+LSG + + S G+ S L+FL+ + N P
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFP---------------- 138
Query: 74 NKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPN----LEVLNFGNNQFTGPI 129
K+SG + L+SL +LD N + G+ + +G+ L + L+ L N+ +G +
Sbjct: 139 GKVSGGL-----KLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV 191
Query: 130 PASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNA 189
+S NL L + N FS +P L + LQ + S N L +F ++
Sbjct: 192 --DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG------DFSRAISTC 243
Query: 190 SRLEMMEISINNFGGMLP----ESVGNLSTRLKRFT------------------VGNNQL 227
+ L+++ IS N F G +P +S+ LS +FT + N
Sbjct: 244 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
Query: 228 FGNIPSXXXXXXXXXXXXXXXXQFTGRI-LGSIGDLQKLQRLRLKGNKFLGEIPSSVGNL 286
+G +P F+G + + ++ ++ L+ L L N+F GE+P S+ NL
Sbjct: 304 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Query: 287 TL-LFTLSFEGNRLEGSIPSSLGKCKXXXXXXXXXXXX----TGTIPTEVIGLSSLSIYL 341
+ L TL N G I +L C+ TG IP + S L + L
Sbjct: 364 SASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL-VSL 420
Query: 342 DLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP 401
LS N L+G +PS+ G L L L + N L GEIP L LE L+++ N G IP
Sbjct: 421 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 480
Query: 402 SSFSSLRGIQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPIKGVFSNSSAIS 461
S S+ + + LS N L+G IPK+ S+N F G +P + + S I
Sbjct: 481 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIW 539
Query: 462 LDGNDNLCGG 471
LD N NL G
Sbjct: 540 LDLNTNLFNG 549
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 144/321 (44%), Gaps = 43/321 (13%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN L G +P LGSLSKLR L + N L GEIP + +LE L N G+IP L
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 483
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120
S + I N+L+GEIP I L +L++L N G++P+++G +L L+
Sbjct: 484 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDL 542
Query: 121 GNNQFTGPIPASISN-----ASNLM----RLTIQKNGFSGKVPSLENLYKLQRV-SFSLN 170
N F G IPA++ A+N + + I+ +G + NL + Q + S LN
Sbjct: 543 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 602
Query: 171 HLGNGEKDDL-------EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVG 223
L ++ + N + +++S N G +P+ +G++ L +G
Sbjct: 603 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-PYLFILNLG 661
Query: 224 NNQLFGNIPSXXXXXXXXXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSV 283
+N + G+IP +GDL+ L L L NK G IP ++
Sbjct: 662 HNDISGSIPD------------------------EVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 284 GNLTLLFTLSFEGNRLEGSIP 304
LT+L + N L G IP
Sbjct: 698 SALTMLTEIDLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 4/222 (1%)
Query: 206 LPESVGNLSTRLKRFTVGNNQLFGNIPSXXXXXXXXXXXXXXXXQFTGRILGSIGDLQKL 265
+P S+ NL + G N L G IP +G I + ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 266 QRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGK-CKXXXXXXXXXXXXT 324
L N G +P S+ +L L ++F+GNR+ G+IP S G K T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 325 GTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCV 384
G IP L+ ++DLS+N L G FG KN + +++N L+ ++ +G
Sbjct: 188 GKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSK 244
Query: 385 RLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPK 426
L L + N G +P + L+ + +L++S NNL G IP+
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 13/228 (5%)
Query: 8 VPGKLGSLSKLRTLAVH-FNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRM 66
+P L +L L L + NNL G IP + L+ L +L G IP+ LS++K +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 67 RSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
++ F N LSG +P SI +L +L + F N++ G++P G + N+ T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 127 GPIPASISNASNLMRLTIQKNGFSGKVPSLENLYK-LQRVSFSLNHLGNGEKDDLEFVSS 185
G IP + +N NL + + +N G L K Q++ HL K+ L F
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKI-----HLA---KNSLAFDLG 238
Query: 186 LVNASR-LEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIP 232
V S+ L +++ N G LP+ + L L V N L G IP
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIP 285
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 20/226 (8%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
N LVG +P + L++L L + N+SG IP + +L L + N G +P ++
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSL-SLLDFPVNQLQGSLPSDIGFTLPNLEVLN 119
S L + I F N++SG IP S + S L + + N+L G +P F NL ++
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--FANLNLAFVD 203
Query: 120 FGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDD 179
N G + N ++ + KN + + L +V S N G +++
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLA---------FDLGKVGLSKNLNGLDLRNN 254
Query: 180 LEFVS---SLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTV 222
+ + L L + +S NN G +P+ GN L+RF V
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN----LQRFDV 295
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 6/172 (3%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAV--NQFVGQIPE 58
+N L G +P + SL L + N +SG IP S+G+ S L F S + N+ G+IP
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL-FTSMTISRNRLTGKIPP 192
Query: 59 TLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVL 118
T + L + + N L G+ + + + N L L +G + NL L
Sbjct: 193 TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLS-KNLNGL 249
Query: 119 NFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLN 170
+ NN+ G +P ++ L L + N G++P NL + +++ N
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 1/124 (0%)
Query: 327 IPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRL 386
IP+ + L L+ N L GP+P L L L ++ +SG IP+ L L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 387 EQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPK-YFEXXXXXXXXXXSSNHFE 445
L + N G +P S SSL + + N +SG IP Y S N
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 446 GEVP 449
G++P
Sbjct: 188 GKIP 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 5/162 (3%)
Query: 15 LSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGAN 74
L+KL L + +N L F +L+ L L A NQ L ++ + G N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 75 KLSGEIPFSIYN-LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI 133
+L +P +++ L+ L L NQLQ S+P+ L NL+ L+ NQ +
Sbjct: 118 QLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 134 SNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNG 175
L +T+ N F E LY Q + + N + +G
Sbjct: 176 DRLGKLQTITLFGNQFD--CSRCETLYLSQWIRENSNKVKDG 215
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
+N+L G L++L TL + N L+ F +L+ L+ L NQ
Sbjct: 68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF 127
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYN-LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLN 119
L +++ + N+L IP ++ L++L L NQLQ S+P L L+ +
Sbjct: 128 DRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTIT 185
Query: 120 FGNNQF 125
NQF
Sbjct: 186 LFGNQF 191
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 8/150 (5%)
Query: 333 GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMN 392
GL+ L+ +L+L NQL F L LG L ++ N+L+ +L++L +
Sbjct: 57 GLTKLT-WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 393 GNFFQGNIPSS-FSSLRGIQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPIK 451
GN + ++PS F L ++ L L+ N L F+ S+N + VP
Sbjct: 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VP-H 172
Query: 452 GVFS---NSSAISLDGNDNLCGGISELHLS 478
G F I+L GN C L+LS
Sbjct: 173 GAFDRLGKLQTITLFGNQFDCSRCETLYLS 202
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 83/200 (41%), Gaps = 15/200 (7%)
Query: 29 SGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLS 88
G + S N +S++ S + IP + + +NKLS + + L+
Sbjct: 8 DGGVCSCNNNKNSVDCSSKKLTAIPSNIPAD------TKKLDLQSNKLSSLPSKAFHRLT 61
Query: 89 SLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNG 148
L LL N+LQ +LP+ I L NLE L +N+ NL L + +N
Sbjct: 62 KLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120
Query: 149 FSGKVPSL-ENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLP 207
P + ++L KL +S N L + K + ++SL RL NN +P
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-KELRL------YNNQLKRVP 173
Query: 208 ESVGNLSTRLKRFTVGNNQL 227
E + T LK + NNQL
Sbjct: 174 EGAFDKLTELKTLKLDNNQL 193
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 5/153 (3%)
Query: 15 LSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGAN 74
L+KLR L ++ N L F L +LE L N+ +L + + N
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
Query: 75 KLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASIS 134
+L P +L+ L+ L N+LQ SLP + L +L+ L NNQ +
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 135 NASNLMRLTIQKNGFS----GKVPSLENLYKLQ 163
+ L L + N G SLE L LQ
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 3/142 (2%)
Query: 10 GKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSI 69
G L L TL V N L F L +L L NQ P L ++ +
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138
Query: 70 GFGANKLSGEIPFSIYN-LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGP 128
G N+L +P +++ L+SL L NQL+ +P L L+ L NNQ
Sbjct: 139 SLGYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRV 196
Query: 129 IPASISNASNLMRLTIQKNGFS 150
+ + L L +Q+N +
Sbjct: 197 PEGAFDSLEKLKMLQLQENPWD 218
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 356 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDL 415
F LKNL L V++NKL V L +L ++ N + P F SL + L L
Sbjct: 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 416 SRNNLSGRIPK 426
N L +PK
Sbjct: 141 GYNELQS-LPK 150
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPE-TL 60
N+L P SL+KL L++ +N L F L+SL+ L NQ + ++PE
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAF 177
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYN-LSSLSLLDFPVN 98
+L ++++ N+L +P ++ L L +L N
Sbjct: 178 DKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 5/162 (3%)
Query: 15 LSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGAN 74
L+KL L + +N L F +L+ L L A NQ L ++ + G N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 75 KLSGEIPFSIYN-LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI 133
+L +P +++ L+ L L NQLQ S+P+ L NL+ L+ NQ +
Sbjct: 118 QLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 134 SNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNG 175
L +T+ N F E LY Q + + N + +G
Sbjct: 176 DRLGKLQTITLFGNQFD--CSRCEILYLSQWIRENSNKVKDG 215
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
+N+L G L++L TL + N L+ F +L+ L+ L NQ
Sbjct: 68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF 127
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYN-LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLN 119
L +++ + N+L IP ++ L++L L NQLQ S+P L L+ +
Sbjct: 128 DRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTIT 185
Query: 120 FGNNQF 125
NQF
Sbjct: 186 LFGNQF 191
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 8/150 (5%)
Query: 333 GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMN 392
GL+ L+ +L+L NQL F L LG L ++ N+L+ +L++L +
Sbjct: 57 GLTKLT-WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 393 GNFFQGNIPSS-FSSLRGIQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPIK 451
GN + ++PS F L ++ L L+ N L F+ S+N + VP
Sbjct: 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VP-H 172
Query: 452 GVFS---NSSAISLDGNDNLCGGISELHLS 478
G F I+L GN C L+LS
Sbjct: 173 GAFDRLGKLQTITLFGNQFDCSRCEILYLS 202
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/339 (21%), Positives = 133/339 (39%), Gaps = 76/339 (22%)
Query: 54 GQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLP 113
++ ETL +LK + NK++ E + Y L +L +L+ N L G L S + LP
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADE---AFYGLDNLQVLNLSYNLL-GELYSSNFYGLP 338
Query: 114 NLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGK--VPSLENLY-------KLQR 164
+ ++ N + L L ++ N + +PS+ +++ L +
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK 398
Query: 165 VSFSLN--HLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTV 222
++ + N HL ++L+ + L+ L+++ ++ N F + + + L++ +
Sbjct: 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458
Query: 223 GNNQLFGNIPSXXXXXXXXXXXXXXXXQFTGRILGSIGD-LQKLQRLRLKGNKFLGEIPS 281
G N L + + + + L LQ L L N +L +P
Sbjct: 459 GENML--------------------QLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPP 497
Query: 282 SV-GNLTLLFTLSFEGNRL----EGSIPSSLGKCKXXXXXXXXXXXXTGTIPTEVIGLSS 336
V +LT L LS NRL +P++L E+
Sbjct: 498 GVFSHLTALRGLSLNSNRLTVLSHNDLPANL----------------------EI----- 530
Query: 337 LSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375
LD+S+NQL P P + +L VLD++ NK E
Sbjct: 531 ----LDISRNQLLAPNPD---VFVSLSVLDITHNKFICE 562
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 47/320 (14%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
L NL +NF NNQ T P + N + L+ + + N + P L NL L ++
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT----- 113
Query: 172 LGNGEKDDLEFVSSLVNASRLEMMEISIN--------------NFGGMLPE--SVGNLST 215
L N + D++ + +L N +RLE+ +I+ NFG + + + NL+T
Sbjct: 114 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTT 173
Query: 216 RLKRFTVGNNQLFGNIPSXXXXXXXXXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKF 275
L+R + +N++ S Q + + +G L L L L GN+
Sbjct: 174 -LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQ- 227
Query: 276 LGEIPSSVGNLTLLFTLSFEGNRLEGSIP-SSLGKCKXXXXXXXXXXXXTGTIPTEVIGL 334
L +I ++ +LT L L N++ P S L K + + GL
Sbjct: 228 LKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-----SPLAGL 281
Query: 335 SSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN 394
++L+ L+L++NQL P LKNL L + N +S P + S +L++L
Sbjct: 282 TALT-NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL----- 331
Query: 395 FFQGNIPSSFSSLRGIQNLD 414
FF N S SSL + N++
Sbjct: 332 FFSNNKVSDVSSLANLTNIN 351
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN + P + SL+KL+ L N +S SS NL+++ +LSA NQ P L
Sbjct: 313 FNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L 366
Query: 61 SELKRMRSIGF 71
+ L R+ +G
Sbjct: 367 ANLTRITQLGL 377
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 357 GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416
G+ + + LD+S N+++ + L CV L+ LV+ N SFSSL +++LDLS
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 417 RNNLSGRIPKYFE 429
N LS +F+
Sbjct: 109 YNYLSNLSSSWFK 121
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 47/320 (14%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
L NL +NF NNQ T P + N + L+ + + N + P L NL L ++
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT----- 113
Query: 172 LGNGEKDDLEFVSSLVNASRLEMMEISIN--------------NFGGMLPE--SVGNLST 215
L N + D++ + +L N +RLE+ +I+ NFG + + + NL+T
Sbjct: 114 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTT 173
Query: 216 RLKRFTVGNNQLFGNIPSXXXXXXXXXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKF 275
L+R + +N++ S Q + + +G L L L L GN+
Sbjct: 174 -LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQ- 227
Query: 276 LGEIPSSVGNLTLLFTLSFEGNRLEGSIP-SSLGKCKXXXXXXXXXXXXTGTIPTEVIGL 334
L +I ++ +LT L L N++ P S L K + + GL
Sbjct: 228 LKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-----SPLAGL 281
Query: 335 SSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN 394
++L+ L+L++NQL P LKNL L + N +S P + S +L++L
Sbjct: 282 TALT-NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL----- 331
Query: 395 FFQGNIPSSFSSLRGIQNLD 414
FF N S SSL + N++
Sbjct: 332 FFYNNKVSDVSSLANLTNIN 351
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN + P + SL+KL+ L + N +S SS NL+++ +LSA NQ P L
Sbjct: 313 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L 366
Query: 61 SELKRMRSIGF 71
+ L R+ +G
Sbjct: 367 ANLTRITQLGL 377
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 357 GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416
G+ + + LD+S N+++ + L CV L+ LV+ N SFSSL +++LDLS
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 417 RNNLSGRIPKYFE 429
N LS +F+
Sbjct: 83 YNYLSNLSSSWFK 95
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 84 IYN-LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRL 142
I+N LSSL +L N Q + DI L NL L+ Q P + ++ S+L L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204
Query: 143 TIQKNGF-SGKVPSLENLYKLQRVSFSLNHLGNGEKDDLE-FVSSLV 187
+ N F S + L LQ + +SLNH+ +K +L+ F SSL
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 326 TIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGI---LKNLGVLDVSENKLSGEIPNSLGS 382
T+ + +GL L +LD + L S F + L+NL LD+S
Sbjct: 92 TMSSNFLGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 383 CVRLEQLVMNGNFFQGN-IPSSFSSLRGIQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSS 441
LE L M GN FQ N +P F+ LR + LDLS+ L P F S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 442 NHF 444
N+F
Sbjct: 209 NNF 211
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 333 GLSSLSIYLDLSKNQLN-GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391
GLSSL + L ++ N LP F L+NL LD+S+ +L P + S L+ L M
Sbjct: 148 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 392 NGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
+ N F + L +Q LD S N++
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%)
Query: 32 IPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLS 91
+P F L +L FL + Q P + L ++ + N F L+SL
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 92 LLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQF 125
+LD+ +N + S ++ +L LN N F
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 134/324 (41%), Gaps = 54/324 (16%)
Query: 112 LPNLEVLNFGNNQFTGPIP--------------------ASISNASNLMRLTIQKNGFSG 151
L NL +NF NNQ T P ++N +NL LT+ N +
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 121
Query: 152 KVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVG 211
P L+NL L R+ S N + + +S+L + L+ + S N + P +
Sbjct: 122 IDP-LKNLTNLNRLELSSNTISD--------ISALSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 212 NLSTRLKRFTVGNNQLFGNIPSXXXXXXXXXXXXXXXXQFTGRILGSIGDLQKLQRLRLK 271
NL+T L+R + +N++ S Q + + +G L L L L
Sbjct: 171 NLTT-LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 225
Query: 272 GNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIP-SSLGKCKXXXXXXXXXXXXTGTIPTE 330
GN+ L +I ++ +LT L L N++ P S L K +
Sbjct: 226 GNQ-LKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-----SP 278
Query: 331 VIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLV 390
+ GL++L+ L+L++NQL P LKNL L + N +S P + S +L++L
Sbjct: 279 LAGLTALT-NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL- 332
Query: 391 MNGNFFQGNIPSSFSSLRGIQNLD 414
FF N S SSL + N++
Sbjct: 333 ----FFSNNKVSDVSSLANLTNIN 352
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN + P + SL+KL+ L N +S SS NL+++ +LSA NQ P L
Sbjct: 314 FNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L 367
Query: 61 SELKRMRSIGF 71
+ L R+ +G
Sbjct: 368 ANLTRITQLGL 378
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 326 TIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGI---LKNLGVLDVSENKLSGEIPNSLGS 382
T+ + +GL L +LD + L S F + L+NL LD+S
Sbjct: 387 TMSSNFLGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 383 CVRLEQLVMNGNFFQGN-IPSSFSSLRGIQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSS 441
LE L M GN FQ N +P F+ LR + LDLS+ L P F +S
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 442 NHFEGEVPIKGVFSNSSAI 460
N + VP G+F +++
Sbjct: 504 NQLKS-VP-DGIFDRLTSL 520
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 36 FGNLSSLEFLSAAVNQFVGQ-IPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLD 94
F LSSLE L A N F +P+ +EL+ + + +L P + +LSSL +L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 95 FPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKV 153
NQL+ S+P I L +L+ + N + P I S + QK S K
Sbjct: 501 MASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP-RIDYLSRWLNKNSQKEQGSAKC 557
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 333 GLSSLSIYLDLSKNQLN-GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391
GLSSL + L ++ N LP F L+NL LD+S+ +L P + S L+ L M
Sbjct: 443 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 392 NGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPK 426
N + F L +Q + L N P+
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 10 GKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSI 69
G SLS L TL + N + +F LSSL+ L A + LK ++ +
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 70 GFGANKL-SGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDI 108
N + S ++P NL++L LD N++Q +D+
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 84 IYN-LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRL 142
I+N LSSL +L N Q + DI L NL L+ Q P + ++ S+L L
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Query: 143 TIQKNGF-SGKVPSLENLYKLQRVSFSLNHLGNGEKDDLE-FVSSLV 187
+ N F S + L LQ + +SLNH+ +K +L+ F SSL
Sbjct: 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 326 TIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGI---LKNLGVLDVSENKLSGEIPNSLGS 382
T+ + +GL L +LD + L S F + L+NL LD+S
Sbjct: 411 TMSSNFLGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 467
Query: 383 CVRLEQLVMNGNFFQGN-IPSSFSSLRGIQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSS 441
LE L M GN FQ N +P F+ LR + LDLS+ L P F S
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 442 NHF 444
N+F
Sbjct: 528 NNF 530
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 333 GLSSLSIYLDLSKNQLN-GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391
GLSSL + L ++ N LP F L+NL LD+S+ +L P + S L+ L M
Sbjct: 467 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 392 NGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
+ N F + L +Q LD S N++
Sbjct: 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%)
Query: 32 IPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLS 91
+P F L +L FL + Q P + L ++ + N F L+SL
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 92 LLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
+LD+ +N + S ++ +L LN N F
Sbjct: 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 10 GKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSI 69
G SLS L TL + N + +F LSSL+ L A + LK ++ +
Sbjct: 94 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 153
Query: 70 GFGANKL-SGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDI 108
N + S ++P NL++L LD N++Q +D+
Sbjct: 154 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 84 IYN-LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRL 142
I+N LSSL +L N Q + DI L NL L+ Q P + ++ S+L L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 143 TIQKNGF-SGKVPSLENLYKLQRVSFSLNHLGNGEKDDLE-FVSSLV 187
+ N F S + L LQ + +SLNH+ +K +L+ F SSL
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 326 TIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGI---LKNLGVLDVSENKLSGEIPNSLGS 382
T+ + +GL L +LD + L S F + L+NL LD+S
Sbjct: 387 TMSSNFLGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 383 CVRLEQLVMNGNFFQGN-IPSSFSSLRGIQNLDLSRNNLSGRIPKYFEXXXXXXXXXXSS 441
LE L M GN FQ N +P F+ LR + LDLS+ L P F S
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 442 NHF 444
N+F
Sbjct: 504 NNF 506
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 333 GLSSLSIYLDLSKNQLN-GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391
GLSSL + L ++ N LP F L+NL LD+S+ +L P + S L+ L M
Sbjct: 443 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 392 NGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420
+ N F + L +Q LD S N++
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%)
Query: 32 IPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLS 91
+P F L +L FL + Q P + L ++ + N F L+SL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 92 LLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
+LD+ +N + S ++ +L LN N F
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 10 GKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSI 69
G SLS L TL + N + +F LSSL+ L A + LK ++ +
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 70 GFGANKL-SGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDI 108
N + S ++P NL++L LD N++Q +D+
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 134/324 (41%), Gaps = 54/324 (16%)
Query: 112 LPNLEVLNFGNNQFTGPIP--------------------ASISNASNLMRLTIQKNGFSG 151
L NL +NF NNQ T P ++N +NL LT+ N +
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 121
Query: 152 KVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVG 211
P L+NL L R+ S N + + +S+L + L+ + S N + P +
Sbjct: 122 IDP-LKNLTNLNRLELSSNTISD--------ISALSGLTSLQQLNFSSNQVTDLKP--LA 170
Query: 212 NLSTRLKRFTVGNNQLFGNIPSXXXXXXXXXXXXXXXXQFTGRILGSIGDLQKLQRLRLK 271
NL+T L+R + +N++ S Q + + +G L L L L
Sbjct: 171 NLTT-LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 225
Query: 272 GNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIP-SSLGKCKXXXXXXXXXXXXTGTIPTE 330
GN+ L +I ++ +LT L L N++ P S L K +
Sbjct: 226 GNQ-LKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-----SP 278
Query: 331 VIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLV 390
+ GL++L+ L+L++NQL P LKNL L + N +S P + S +L++L
Sbjct: 279 LAGLTALT-NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL- 332
Query: 391 MNGNFFQGNIPSSFSSLRGIQNLD 414
FF N S SSL + N++
Sbjct: 333 ----FFYNNKVSDVSSLANLTNIN 352
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN + P + SL+KL+ L + N +S SS NL+++ +LSA NQ P L
Sbjct: 314 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L 367
Query: 61 SELKRMRSIGF 71
+ L R+ +G
Sbjct: 368 ANLTRITQLGL 378
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 47/320 (14%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
L NL +NF NNQ T P + N + L+ + + N + P L NL L ++
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT----- 118
Query: 172 LGNGEKDDLEFVSSLVNASRLEMMEISINN--------------FGGMLPE--SVGNLST 215
L N + D++ + +L N +RLE+ +I++ FG + + + NL+T
Sbjct: 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 178
Query: 216 RLKRFTVGNNQLFGNIPSXXXXXXXXXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKF 275
L+R + +N++ S Q + + +G L L L L GN+
Sbjct: 179 -LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQ- 232
Query: 276 LGEIPSSVGNLTLLFTLSFEGNRLEGSIP-SSLGKCKXXXXXXXXXXXXTGTIPTEVIGL 334
L +I ++ +LT L L N++ P S L K + + GL
Sbjct: 233 LKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-----SPLAGL 286
Query: 335 SSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN 394
++L+ L+L++NQL P LKNL L + N +S P + S +L++L
Sbjct: 287 TALT-NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL----- 336
Query: 395 FFQGNIPSSFSSLRGIQNLD 414
FF N S SSL + N++
Sbjct: 337 FFYNNKVSDVSSLANLTNIN 356
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN + P + SL+KL+ L + N +S SS NL+++ +LSA NQ P L
Sbjct: 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L 371
Query: 61 SELKRMRSIGF 71
+ L R+ +G
Sbjct: 372 ANLTRITQLGL 382
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 134/324 (41%), Gaps = 54/324 (16%)
Query: 112 LPNLEVLNFGNNQFTGPIP--------------------ASISNASNLMRLTIQKNGFSG 151
L NL +NF NNQ T P ++N +NL LT+ N +
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 121
Query: 152 KVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVG 211
P L+NL L R+ S N + + +S+L + L+ + S N + P +
Sbjct: 122 IDP-LKNLTNLNRLELSSNTISD--------ISALSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 212 NLSTRLKRFTVGNNQLFGNIPSXXXXXXXXXXXXXXXXQFTGRILGSIGDLQKLQRLRLK 271
NL+T L+R + +N++ S Q + + +G L L L L
Sbjct: 171 NLTT-LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 225
Query: 272 GNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIP-SSLGKCKXXXXXXXXXXXXTGTIPTE 330
GN+ L +I ++ +LT L L N++ P S L K +
Sbjct: 226 GNQ-LKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-----SP 278
Query: 331 VIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLV 390
+ GL++L+ L+L++NQL P LKNL L + N +S P + S +L++L
Sbjct: 279 LAGLTALT-NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL- 332
Query: 391 MNGNFFQGNIPSSFSSLRGIQNLD 414
FF N S SSL + N++
Sbjct: 333 ----FFYNNKVSDVSSLANLTNIN 352
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN + P + SL+KL+ L + N +S SS NL+++ +LSA NQ P L
Sbjct: 314 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L 367
Query: 61 SELKRMRSIGF 71
+ L R+ +G
Sbjct: 368 ANLTRITQLGL 378
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 343 LSKNQLNG----PLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG 398
L++ LNG LP+ L NL VLD+S N+L+ +P LGSC +L+ N
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMV-T 306
Query: 399 NIPSSFSSLRGIQNLDLSRNNLSGRIPK 426
+P F +L +Q L + N L + K
Sbjct: 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 265 LQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKC 310
L RL L GN L E+P+ + NL+ L L NRL S+P+ LG C
Sbjct: 249 LTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSC 292
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMR 67
+P +LGS +L+ F+N+ +P FGNL +L+FL N Q + L+E K +
Sbjct: 285 LPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE-KSVT 342
Query: 68 SIGFGANKLSGEIP 81
+ F EIP
Sbjct: 343 GLIFYLRDNRPEIP 356
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 79 EIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASN 138
E+P I NLS+L +LD N+L SLP+++G L+ F +N T +P N N
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCF-QLKYFYFFDNMVTT-LPWEFGNLCN 317
Query: 139 LMRLTIQKN 147
L L ++ N
Sbjct: 318 LQFLGVEGN 326
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 47/320 (14%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
L NL +NF NNQ T P + N + L+ + + N + P L NL L ++
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT----- 117
Query: 172 LGNGEKDDLEFVSSLVNASRLEMMEISINN--------------FGGMLPE--SVGNLST 215
L N + D++ + +L N +RLE+ +I++ FG + + + NL+T
Sbjct: 118 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 177
Query: 216 RLKRFTVGNNQLFGNIPSXXXXXXXXXXXXXXXXQFTGRILGSIGDLQKLQRLRLKGNKF 275
L+R + +N++ S Q + + +G L L L L GN+
Sbjct: 178 -LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQ- 231
Query: 276 LGEIPSSVGNLTLLFTLSFEGNRLEGSIP-SSLGKCKXXXXXXXXXXXXTGTIPTEVIGL 334
L +I ++ +LT L L N++ P S L K + + GL
Sbjct: 232 LKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-----SPLAGL 285
Query: 335 SSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN 394
++L+ L+L++NQL P LKNL L + N +S P + S +L++L
Sbjct: 286 TALT-NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL----- 335
Query: 395 FFQGNIPSSFSSLRGIQNLD 414
FF N S SSL + N++
Sbjct: 336 FFANNKVSDVSSLANLTNIN 355
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETL 60
FN + P + SL+KL+ L N +S SS NL+++ +LSA NQ P L
Sbjct: 317 FNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L 370
Query: 61 SELKRMRSIGF 71
+ L R+ +G
Sbjct: 371 ANLTRITQLGL 381
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 24/184 (13%)
Query: 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSEL-KRM 66
V L KL L +N L G++P+ FG+ L L+ A NQ + +IP +++
Sbjct: 322 VETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQ-ITEIPANFCGFTEQV 379
Query: 67 RSIGFGANKLSGEIP--FSIYNLSSLSLLDFPVNQLQGSL------PSD-IGFTLPNLEV 117
++ F NKL IP F ++S S +DF N++ GS+ P D F N+
Sbjct: 380 ENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEI-GSVDGKNFDPLDPTPFKGINVSS 437
Query: 118 LNFGNNQF---------TGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFS 168
+N NNQ TG +SI+ N + I KN + + +N Y L +
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLXGNXL-TEIPKNSLKDENENFKNTYLLTSIDLR 496
Query: 169 LNHL 172
N L
Sbjct: 497 FNKL 500
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 23/163 (14%)
Query: 7 KVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRM 66
+ P + LS L+ + L E+P + + LE L+ A N +P +++ L R+
Sbjct: 95 QFPDQAFRLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRL 152
Query: 67 RSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT 126
R + A E+P + + + + QG L NL+ L ++T
Sbjct: 153 RELSIRACPELTELPEPLASTDA-------SGEHQG---------LVNLQSLRL---EWT 193
Query: 127 G--PIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSF 167
G +PASI+N NL L I+ + S P++ +L KL+ +
Sbjct: 194 GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
LP LE L GNN+ T +S + L L+++ N S VP L L KLQ + S NH
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 207
Query: 172 LGNGEKDDLEFVSSLVNASRLEM 194
+ DL ++ L N LE+
Sbjct: 208 IS-----DLRALAGLKNLDVLEL 225
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
LP LE L GNN+ T +S + L L+++ N S VP L L KLQ + S NH
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 207
Query: 172 LGNGEKDDLEFVSSLVNASRLEM 194
+ DL ++ L N LE+
Sbjct: 208 IS-----DLRALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
LP LE L GNN+ T +S + L L+++ N S VP L L KLQ + S NH
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 207
Query: 172 LGNGEKDDLEFVSSLVNASRLEM 194
+ DL ++ L N LE+
Sbjct: 208 IS-----DLRALAGLKNLDVLEL 225
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
LP LE L GNN+ T +S + L L+++ N S VP L L KLQ + S NH
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 184
Query: 172 LGNGEKDDLEFVSSLVNASRLEM 194
+ DL ++ L N LE+
Sbjct: 185 IS-----DLRALAGLKNLDVLEL 202
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
LP LE L GNN+ T +S + L L+++ N S VP L L KLQ + S NH
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 189
Query: 172 LGNGEKDDLEFVSSLVNASRLEM 194
+ DL ++ L N LE+
Sbjct: 190 IS-----DLRALAGLKNLDVLEL 207
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
LP LE L GNN+ T +S + L L+++ N S VP L L KLQ + S NH
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 187
Query: 172 LGNGEKDDLEFVSSLVNASRLEM 194
+ DL ++ L N LE+
Sbjct: 188 IS-----DLRALAGLKNLDVLEL 205
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
LP LE L GNN+ T +S + L L+++ N S VP L L KLQ + S NH
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 189
Query: 172 LGNGEKDDLEFVSSLVNASRLEMM 195
+ DL ++ L N LE+
Sbjct: 190 IS-----DLRALAGLKNLDVLELF 208
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 356 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDL 415
FG L +L L++ N+L+G PN+ +++L + N + F L ++ L+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 416 SRNNLSGRIPKYFEXXXXXXXXXXSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISEL 475
N +S +P FE +SN F + SL+G CG S++
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV 169
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 15 LSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIP-ETLSELKRMRSIGFGA 73
L +L+TL ++ N +S +P SF +L+SL L+ A N F +E R +S+ GA
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGA 160
Query: 74 NKLSG----------EIPFSIYNLSS 89
+ ++P S + SS
Sbjct: 161 ARCGAPSKVRDVQIKDLPHSEFKCSS 186
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 36 FGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANK---LSGEIPFSIYNLSSLSL 92
FG L L L NQ G P ++ + G NK +S ++ ++ L +L+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 93 LDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQF 125
D NQ+ +P L +L LN +N F
Sbjct: 110 YD---NQISCVMPGSFEH-LNSLTSLNLASNPF 138
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
LP LE L GNN+ T +S + L L+++ N S VP L L KLQ + S NH
Sbjct: 130 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 186
Query: 172 LGNGEKDDLEFVSSLVNASRLEM 194
+ DL ++ L N LE+
Sbjct: 187 IS-----DLRALAGLKNLDVLEL 204
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSFSSLRGIQNLDLSRNNLS 421
P + ++ L L+ NNL+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 83 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 141
Query: 401 PSSFSSLRGIQNLDLSRNNLS 421
P + ++ L L+ NNL+
Sbjct: 142 PGLLTPTPKLEKLSLANNNLT 162
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSFSSLRGIQNLDLSRNNLS 421
P + ++ L L+ NNL+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT 161
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSFSSLRGIQNLDLSRNNLS 421
P + ++ L L+ NNL+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSFSSLRGIQNLDLSRNNLS 421
P + ++ L L+ NNL+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT 161
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
LP LE L GNN+ T +S + L L+++ N S VP L L KLQ + S NH
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LACLTKLQNLYLSKNH 184
Query: 172 LGNGEKDDLEFVSSLVNASRLEM 194
+ DL + L N LE+
Sbjct: 185 IS-----DLRALCGLKNLDVLEL 202
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 119/283 (42%), Gaps = 20/283 (7%)
Query: 34 SSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYN-LSSLSL 92
F + LE L N P + L +R++G +N+L IP ++ LS+L+
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTK 108
Query: 93 LDFPVNQLQGSLPSDIGFT-LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQK-NGFS 150
LD N++ L D F L NL+ L G+N + S ++L +LT++K N S
Sbjct: 109 LDISENKIVILL--DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166
Query: 151 GKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNF-GGMLPES 209
+L +L+ L + L HL D F RL+++EIS + M P
Sbjct: 167 IPTEALSHLHGL--IVLRLRHLNINAIRDYSF----KRLYRLKVLEISHWPYLDTMTPNC 220
Query: 210 VGNLSTRLKRFTVGNNQLFGNIPSXXXXXXXXXXXXXXXXQFTGRILGS-IGDLQKLQRL 268
+ L+ L ++ + L +P I GS + +L +LQ +
Sbjct: 221 LYGLN--LTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI 277
Query: 269 RLKGNKFLGEIPSSVGNLTLLFTLSFEGNR---LEGSIPSSLG 308
+L G + P + L L L+ GN+ LE S+ S+G
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 18 LRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLS 77
L +L++ NL+ + +L L FL+ + N L EL R++ I +L+
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285
Query: 78 GEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNN 123
P++ L+ L +L+ NQL +L + ++ NLE L +N
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSFSSLRGIQNLDLSRNNLS 421
P + ++ L L+ N+L+
Sbjct: 141 PGLLTPTPKLEKLSLANNDLT 161
>pdb|2V4U|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain In Complex
With 5-Oxo-L-Norleucine
Length = 289
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 18/89 (20%)
Query: 127 GPIPASIS----NASNL---MRLTIQKNGFS----------GKVPSLENLYKLQRVSFSL 169
P+P I N NL MRL I++ F G VP +E ++ R +
Sbjct: 155 APVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHR-HRFEVNP 213
Query: 170 NHLGNGEKDDLEFVSSLVNASRLEMMEIS 198
N + E++DL FV V+ R+E++E++
Sbjct: 214 NLIKQFEQNDLSFVGQDVDGDRMEIIELA 242
>pdb|2VKT|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain
Length = 289
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 18/89 (20%)
Query: 127 GPIPASIS----NASNL---MRLTIQKNGFS----------GKVPSLENLYKLQRVSFSL 169
P+P I N NL MRL I++ F G VP +E ++ R +
Sbjct: 155 APVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHR-HRFEVNP 213
Query: 170 NHLGNGEKDDLEFVSSLVNASRLEMMEIS 198
N + E++DL FV V+ R+E++E++
Sbjct: 214 NLIKQFEQNDLSFVGQDVDGDRMEIIELA 242
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIP-SSFGNLSSLEFLSAAVNQFVGQIPETL 60
N++ PG SL L+ L + N L G +P F +L+ L L NQ
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108
Query: 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLP 105
L ++ + NKL+ E+P I L+ L+ L NQL+ S+P
Sbjct: 109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIP 151
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 98 NQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLE 157
NQL G+LP + +L L VL+ G NQ T A +L L + N + +E
Sbjct: 74 NQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIE 132
Query: 158 NLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNA 189
L L ++ N L + + +SSL +A
Sbjct: 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSFSSLRGIQNLDLSRNNLS 421
P + ++ L L+ N L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT 161
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSFSSLRGIQNLDLSRNNLS 421
P + ++ L L+ N L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT 161
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 29/152 (19%)
Query: 11 KLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIG 70
+L L + R ++ + + NLS LE L A + + + +L+ + SI
Sbjct: 121 RLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLE-LRANIEEMPSHL---FDDLENLESIE 176
Query: 71 FGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIP 130
FG+NKL +P I +P L+ LN +NQ
Sbjct: 177 FGSNKLR-------------------------QMPRGIFGKMPKLKQLNLASNQLKSVPD 211
Query: 131 ASISNASNLMRLTIQKNGFSGKVPSLENLYKL 162
++L ++ + N + P ++ L +
Sbjct: 212 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 243
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 40 SSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSG--EIPFSIYNLSSLSLLDFPV 97
SS FL+ N F + + S LKR++++ N L ++ N+SSL LD +
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 98 NQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPI 129
N L ++ VLN +N TG +
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 79/210 (37%), Gaps = 21/210 (10%)
Query: 77 SGEIPFSIY---NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI 133
S E +S++ N+ LS+ D P + PS FT LNF N FT +
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCP-PSPSSFTF-----LNFTQNVFTDSVFQGC 373
Query: 134 SNASNLMRLTIQKNGFSG--KVPSL-ENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNAS 190
S L L +Q+NG KV + +N+ L+ + SLN L + D + A
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD-----RTCAWAE 428
Query: 191 RLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSXXXXXXXXXXXXXXXXQ 250
+ ++ +S N G + L ++K + NN++ IP Q
Sbjct: 429 SILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQ 484
Query: 251 FTGRILGSIGDLQKLQRLRLKGNKFLGEIP 280
G L LQ + L N + P
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 112 LPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171
LP LE L GNN+ T +S + L L+++ N VP L L KLQ + S NH
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIRRIVP-LARLTKLQNLYLSKNH 187
Query: 172 LGNGEKDDLEFVSSLVNASRLEM 194
+ DL + L N LE+
Sbjct: 188 IS-----DLRALRGLKNLDVLEL 205
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSFSSLRGIQNLDLSRNNLS 421
P + ++ L L+ N L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT 161
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSFSSLRGIQNLDLSRNNLS 421
P + ++ L L+ N L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT 161
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 15/143 (10%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
+ L ++TL + ++ P LS+L+ L +NQ P L+ L ++ +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 158
Query: 72 GANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIG--FTLPNLEVLNFGNNQFTGPI 129
G ++S P + NLS L+ L N++ SDI +LPNL ++ NNQ +
Sbjct: 159 GNAQVSDLTPLA--NLSKLTTLKADDNKI-----SDISPLASLPNLIEVHLKNNQISDVS 211
Query: 130 PASISNASNLMRLTIQKNGFSGK 152
P ++N SNL +T+ + +
Sbjct: 212 P--LANTSNLFIVTLTNQTITNQ 232
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 5 VGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELK 64
+ VP + + +++ L ++ N ++ P F +L+ L +L+ AVNQ +L
Sbjct: 31 LASVPAGIPTTTQV--LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLT 88
Query: 65 RMRSIGFGANKLSGEIPFSIY-NLSSLS 91
++ + N+L IP ++ NL SL+
Sbjct: 89 KLTHLALHINQLKS-IPMGVFDNLKSLT 115
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQ--- 397
LDL N++ +F LKNL L + NK+S P + V+LE+L ++ N +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 398 GNIPSSFSSLRGIQN 412
+P + LR +N
Sbjct: 117 EKMPKTLQELRVHEN 131
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 33/168 (19%)
Query: 10 GKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVG---QIPETLSEL--- 63
G +L L TL + N +S P +F L LE L + NQ ++P+TL EL
Sbjct: 70 GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH 129
Query: 64 -----KRMRSIGFGANKLS----GEIPFS-----------IYNLSSLSLLDFPVNQLQGS 103
K +S+ G N++ G P + LS + + D + +
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189
Query: 104 LPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSG 151
LP P+L L+ N+ T AS+ +NL +L + N S
Sbjct: 190 LP-------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQ--- 397
LDL N++ +F LKNL L + NK+S P + V+LE+L ++ N +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 398 GNIPSSFSSLRGIQN 412
+P + LR +N
Sbjct: 117 EKMPKTLQELRVHEN 131
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 33/168 (19%)
Query: 10 GKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVG---QIPETLSEL--- 63
G +L L TL + N +S P +F L LE L + NQ ++P+TL EL
Sbjct: 70 GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH 129
Query: 64 -----KRMRSIGFGANKLS----GEIPFS-----------IYNLSSLSLLDFPVNQLQGS 103
K +S+ G N++ G P + LS + + D + +
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189
Query: 104 LPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSG 151
LP P+L L+ N+ T AS+ +NL +L + N S
Sbjct: 190 LP-------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 20/138 (14%)
Query: 63 LKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGN 122
L+ ++++ + +++ P + LS+L +L +NQ+ P G T NL+ L+ GN
Sbjct: 112 LQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISPL-AGLT--NLQYLSIGN 166
Query: 123 NQFTGPIPASISNASNLMRLTIQKNGFSGKVP--SLENLYKLQRVSFSLNHLGNGEKDDL 180
NQ P ++N S L L N S P SL NL ++ HL + + D
Sbjct: 167 NQVNDLTP--LANLSKLTTLRADDNKISDISPLASLPNLIEV--------HLKDNQISD- 215
Query: 181 EFVSSLVNASRLEMMEIS 198
VS L N S L ++ ++
Sbjct: 216 --VSPLANLSNLFIVTLT 231
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 3/149 (2%)
Query: 12 LGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGF 71
L L+ L L + N L F L++L+ L NQ +L + +
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 72 GANKLSGEIPFSIYN-LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIP 130
N+L +P +++ L++L+ LD NQLQ SLP + L L+ L NQ
Sbjct: 141 AHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 131 ASISNASNLMRLTIQKNGFSGKVPSLENL 159
++L + + N + P + L
Sbjct: 199 GVFDRLTSLQYIWLHDNPWDCTCPGIRYL 227
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 68/167 (40%), Gaps = 3/167 (1%)
Query: 259 IGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKXXXXXXX 318
I L ++ L L GNK L +I S++ LT L L GN+L+ S+P+ +
Sbjct: 59 IQYLPNVRYLALGGNK-LHDI-SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115
Query: 319 XXXXXTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPN 378
++P V + YL+L+ NQL F L NL LD+S N+L
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 379 SLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIP 425
+L+ L + N + F L +Q + L N P
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Query: 10 GKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSI 69
G L+ L+ L + N L F L++L +L+ A NQ +L + +
Sbjct: 103 GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 70 GFGANKLSGEIPFSIYN-LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGP 128
N+L +P +++ L+ L L NQL+ S+P + L +L+ + +N +
Sbjct: 163 DLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 220
Query: 129 IP 130
P
Sbjct: 221 CP 222
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 15 LSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGAN 74
L +R LA+ N L S+ L++L +L NQ +L ++ + N
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 75 KLSGEIPFSIYN-LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQF 125
+L +P +++ L++L+ L+ NQLQ SLP + L NL L+ NQ
Sbjct: 120 QLQS-LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQL 169
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 357 GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416
G+ + LD+S NK++ L +C L+ L++ + +F SL +++LDLS
Sbjct: 49 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 108
Query: 417 RNNLSGRIPKYF 428
N+LS +F
Sbjct: 109 DNHLSSLSSSWF 120
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 115/273 (42%), Gaps = 58/273 (21%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQF--------- 52
N + G LGSL L H ++LS S FG LSSL++L+ N +
Sbjct: 89 NTIEGDAFYSLGSLEHLDLSDNHLSSLSS---SWFGPLSSLKYLNLMGNPYQTLGVTSLF 145
Query: 53 ----------VGQIPETLSELKRMRSIGFGA-NKLSGEIPFSIYNLSSLSLLDF-PVNQL 100
+G + ET SE++R+ G + N+L + S+ N S SL ++ L
Sbjct: 146 PNLTNLQTLRIGNV-ETFSEIRRIDFAGLTSLNELEIK-ALSLRNYQSQSLKSIRDIHHL 203
Query: 101 QGSLP---------SDIGFTLPNLEV--LNFGNNQFTGPIPASISNASNLMRLTIQKNGF 149
L +DI ++ LE+ N QF+ P+P + S+ M+ K F
Sbjct: 204 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS-PLP--VDEVSSPMK----KLAF 256
Query: 150 SGKV---PSLENLYKLQR-------VSF---SLNHLGNGEKDDLEFVSSLVNASRLEMME 196
G V S L KL R V F +LN LG+ + + VS L + +
Sbjct: 257 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 316
Query: 197 ISINNFGGMLP-ESVGNLSTRLKRFTVGNNQLF 228
+ I F +V +L ++KR TV N+++F
Sbjct: 317 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 349
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 357 GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416
G+ + LD+S NK++ L +C L+ L++ + +F SL +++LDLS
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82
Query: 417 RNNLSGRIPKYF 428
N+LS +F
Sbjct: 83 DNHLSSLSSSWF 94
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 115/273 (42%), Gaps = 58/273 (21%)
Query: 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQF--------- 52
N + G LGSL L H ++LS S FG LSSL++L+ N +
Sbjct: 63 NTIEGDAFYSLGSLEHLDLSDNHLSSLSS---SWFGPLSSLKYLNLMGNPYQTLGVTSLF 119
Query: 53 ----------VGQIPETLSELKRMRSIGFGA-NKLSGEIPFSIYNLSSLSLLDF-PVNQL 100
+G + ET SE++R+ G + N+L + S+ N S SL ++ L
Sbjct: 120 PNLTNLQTLRIGNV-ETFSEIRRIDFAGLTSLNELEIK-ALSLRNYQSQSLKSIRDIHHL 177
Query: 101 QGSLP---------SDIGFTLPNLEV--LNFGNNQFTGPIPASISNASNLMRLTIQKNGF 149
L +DI ++ LE+ N QF+ P+P + S+ M+ K F
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS-PLP--VDEVSSPMK----KLAF 230
Query: 150 SGKV---PSLENLYKLQR-------VSF---SLNHLGNGEKDDLEFVSSLVNASRLEMME 196
G V S L KL R V F +LN LG+ + + VS L + +
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290
Query: 197 ISINNFGGMLP-ESVGNLSTRLKRFTVGNNQLF 228
+ I F +V +L ++KR TV N+++F
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 342 DLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP 401
DLSK+++ L S F +L L +++N+++ N+ L +L ++ NF G+I
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSID 339
Query: 402 SS-FSSLRGIQNLDLSRNNLSG 422
S F +L ++ LDLS N++
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA 361
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 11/153 (7%)
Query: 11 KLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIG 70
K LSK + A+ + S F + + LE L+ A N+ L + +
Sbjct: 278 KTCDLSKSKIFAL--------LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329
Query: 71 FGANKLSGEIPFSIY-NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPI 129
N L G I ++ NL L +LD N ++ +L LPNL+ L NQ
Sbjct: 330 LSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVP 387
Query: 130 PASISNASNLMRLTIQKNGFSGKVPSLENLYKL 162
++L ++ + N + P ++ L +
Sbjct: 388 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 420
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 333 GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMN 392
GLS+L YL+L+ L +P N L L LD+S N LS P S + L++L M
Sbjct: 183 GLSNLR-YLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239
Query: 393 GNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421
+ Q ++F +L+ + ++L+ NNL+
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 33/165 (20%)
Query: 63 LKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGN 122
L +R + G NKL +I ++ L++L+ L NQLQ SLP+ + L NL+ L
Sbjct: 62 LPNVRYLALGGNKLH-DIS-ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118
Query: 123 NQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEF 182
NQ +P +G K+ +L LY L L G D
Sbjct: 119 NQLQS-LP----------------DGVFDKLTNLTYLYLYHN---QLQSLPKGVFD---- 154
Query: 183 VSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQL 227
L N +RL++ NN LPE V + T+LK+ ++ +NQL
Sbjct: 155 --KLTNLTRLDLD----NNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 3/160 (1%)
Query: 259 IGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKXXXXXXX 318
I L ++ L L GNK L +I S++ LT L L GN+L+ S+P+ +
Sbjct: 59 IQYLPNVRYLALGGNK-LHDI-SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115
Query: 319 XXXXXTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPN 378
++P V + YL L NQL F L NL LD+ N+L
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 379 SLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418
+L+QL +N N + F L + ++ L N
Sbjct: 176 VFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 26/103 (25%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLG----------------SCV 384
+DLS NQ++ P F L++L L + NK++ E+P SL +C+
Sbjct: 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCL 119
Query: 385 RLEQ---------LVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418
R++ L + N Q +FS LR IQ + L++N
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 10 GKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSI 69
G SLS L TL + N + +F LSSL+ L A + LK ++ +
Sbjct: 72 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 131
Query: 70 GFGANKL-SGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDI 108
N + S ++P NL++L LD N++Q +D+
Sbjct: 132 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 10 GKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSI 69
G SLS L TL + N + +F LSSL+ L A + LK ++ +
Sbjct: 71 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 130
Query: 70 GFGANKL-SGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDI 108
N + S ++P NL++L LD N++Q +D+
Sbjct: 131 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 10 GKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSI 69
G SLS L TL + N + +F LSSL+ L A + LK ++ +
Sbjct: 71 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 130
Query: 70 GFGANKL-SGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDI 108
N + S ++P NL++L LD N++Q +D+
Sbjct: 131 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 10 GKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSI 69
G SLS L TL + N + +F LSSL+ L A + LK ++ +
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 70 GFGANKL-SGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDI 108
N + S ++P NL++L LD N++Q +D+
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMR 67
VP +L + L + + N +S SF N++ L L + N+ P T LK +R
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 68 SIGFGANKLSGEIPFSIYN-LSSLSLLDFPVNQL 100
+ N +S +P +N LS+LS L N L
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 10 GKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSI 69
G SLS L TL + N + +F LSSL+ L A + LK ++ +
Sbjct: 72 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKEL 131
Query: 70 GFGANKL-SGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDI 108
N + S ++P NL++L LD N++Q +D+
Sbjct: 132 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 333 GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMN 392
GL LS L L+ N + P +F L +L L E KL+ +G + L++L +
Sbjct: 78 GLHHLS-NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136
Query: 393 GNFFQG-NIPSSFSSLRGIQNLDLSRN 418
NF +P+ FS+L + ++DLS N
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 33 PSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKL-SGEIPFSIYNLSSLS 91
P SF L+SLE L A + + +L ++ + N + S ++P NL++L
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 92 LLDFPVNQLQGSLPSDIGFTLPNLEV----------LNFGNNQ-FTGPIPASIS-----N 135
+D N +Q +D+ F N +V ++F +Q F G ++ N
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216
Query: 136 ASNLMRLTIQ 145
+SN+M+ +Q
Sbjct: 217 SSNIMKTCLQ 226
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 10 GKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSI 69
G L+ L L + N L F L+SL +L+ + NQ +L +++ +
Sbjct: 46 GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105
Query: 70 GFGANKLSGEIPFSIYN-LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGP 128
N+L +P +++ L+ L L NQL+ S+P + L +L+ + +N +
Sbjct: 106 ALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 163
Query: 129 IP 130
P
Sbjct: 164 CP 165
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 333 GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMN 392
GL LS L L+ N + P +F L +L L E KL+ +G + L++L +
Sbjct: 73 GLHHLS-NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 131
Query: 393 GNFFQG-NIPSSFSSLRGIQNLDLSRN 418
NF +P+ FS+L + ++DLS N
Sbjct: 132 HNFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 33 PSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKL-SGEIPFSIYNLSSLS 91
P SF L+SLE L A + + +L ++ + N + S ++P NL++L
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 92 LLDFPVNQLQGSLPSDIGFTLPNLEV----------LNFGNNQ-FTGPIPASIS-----N 135
+D N +Q +D+ F N +V ++F +Q F G ++ N
Sbjct: 152 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 211
Query: 136 ASNLMRLTIQ 145
+SN+M+ +Q
Sbjct: 212 SSNIMKTCLQ 221
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 10 GKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLS 46
G L LR L++ +NN+ P SF LS+L +LS
Sbjct: 266 GSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLS 302
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 341 LDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSL-GSCVRLEQLVMNGNFFQGN 399
L LS+NQ+ F L L +L + ENKL +PN + +L++L ++ N +
Sbjct: 57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKSV 115
Query: 400 IPSSFSSLRGIQNLDLSRNNLSGRIPK 426
F L +Q + L N P+
Sbjct: 116 PDGIFDRLTSLQKIWLHTNPWDCSCPR 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.136 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,955,598
Number of Sequences: 62578
Number of extensions: 506528
Number of successful extensions: 1443
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 874
Number of HSP's gapped (non-prelim): 352
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)