Query 041473
Match_columns 488
No_of_seqs 216 out of 2970
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 07:29:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.1E-50 4.6E-55 429.5 30.6 470 2-481 150-620 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.7E-49 3.6E-54 422.6 30.7 460 2-467 79-559 (968)
3 KOG4194 Membrane glycoprotein 100.0 5E-39 1.1E-43 293.2 7.4 380 44-458 82-465 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.5E-38 3.3E-43 290.0 6.2 395 43-471 55-455 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3.4E-38 7.4E-43 275.4 -9.8 435 11-468 63-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.1E-35 2.5E-40 259.7 -11.8 443 17-483 46-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 5.4E-33 1.2E-37 256.2 -2.3 371 14-449 5-379 (1255)
8 KOG0618 Serine/threonine phosp 100.0 6.9E-33 1.5E-37 266.2 -2.4 434 5-468 34-489 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.5E-32 3.3E-37 253.2 -3.8 360 1-401 16-379 (1255)
10 KOG0618 Serine/threonine phosp 100.0 1.9E-32 4E-37 263.2 -5.7 435 2-466 54-511 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.3E-23 2.8E-28 224.5 26.9 344 55-445 549-906 (1153)
12 KOG4237 Extracellular matrix p 99.9 2.9E-27 6.3E-32 206.9 -3.4 399 17-442 68-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 9.8E-23 2.1E-27 217.8 22.6 305 66-395 591-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 1.5E-23 3.3E-28 183.7 -4.1 391 1-418 76-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 5.9E-18 1.3E-22 168.6 18.2 183 216-428 283-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.5E-17 3.2E-22 165.8 17.8 201 215-449 262-462 (788)
17 cd00116 LRR_RI Leucine-rich re 99.8 1.4E-19 3E-24 169.0 1.6 251 216-467 24-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.7 4.7E-17 1E-21 163.2 12.3 253 190-475 178-435 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 4.7E-18 1E-22 158.6 2.4 210 234-444 76-319 (319)
20 KOG0617 Ras suppressor protein 99.7 1.1E-18 2.4E-23 135.9 -3.6 176 288-469 34-213 (264)
21 PRK15370 E3 ubiquitin-protein 99.7 6.2E-16 1.4E-20 155.2 12.6 240 215-484 178-429 (754)
22 KOG0617 Ras suppressor protein 99.5 9.9E-17 2.1E-21 125.1 -4.2 168 307-479 29-199 (264)
23 KOG1909 Ran GTPase-activating 99.3 9.4E-13 2E-17 114.9 0.8 251 182-444 22-310 (382)
24 KOG1259 Nischarin, modulator o 99.2 3.9E-12 8.4E-17 108.8 2.8 226 231-466 206-438 (490)
25 KOG3207 Beta-tubulin folding c 99.2 2.6E-12 5.7E-17 115.4 0.6 215 13-252 118-339 (505)
26 PF14580 LRR_9: Leucine-rich r 99.2 1.9E-11 4.1E-16 100.2 5.1 103 339-445 22-126 (175)
27 KOG3207 Beta-tubulin folding c 99.2 1.6E-12 3.4E-17 116.8 -1.3 209 236-446 118-340 (505)
28 KOG4658 Apoptotic ATPase [Sign 99.2 4E-11 8.6E-16 123.0 7.6 131 14-148 521-653 (889)
29 KOG1909 Ran GTPase-activating 99.2 4.7E-12 1E-16 110.7 -0.5 185 216-421 93-311 (382)
30 PF14580 LRR_9: Leucine-rich r 99.1 7.3E-11 1.6E-15 96.7 5.9 128 309-442 17-150 (175)
31 KOG1259 Nischarin, modulator o 99.1 2E-11 4.3E-16 104.5 1.8 131 331-468 280-412 (490)
32 KOG0532 Leucine-rich repeat (L 99.1 3.6E-12 7.8E-17 118.2 -2.9 170 266-445 78-247 (722)
33 PLN03150 hypothetical protein; 99.1 3E-10 6.5E-15 114.2 8.3 118 361-481 419-538 (623)
34 COG4886 Leucine-rich repeat (L 99.1 1.7E-10 3.7E-15 110.8 6.1 199 243-451 97-296 (394)
35 COG4886 Leucine-rich repeat (L 99.1 1.8E-10 3.9E-15 110.7 6.1 202 219-430 97-299 (394)
36 KOG4658 Apoptotic ATPase [Sign 99.1 9.2E-11 2E-15 120.3 4.2 131 14-146 543-677 (889)
37 PF13855 LRR_8: Leucine rich r 99.0 3E-10 6.5E-15 76.5 3.4 61 384-444 1-61 (61)
38 KOG1859 Leucine-rich repeat pr 99.0 2E-11 4.3E-16 116.5 -3.3 199 262-471 83-295 (1096)
39 KOG0532 Leucine-rich repeat (L 99.0 3.5E-11 7.6E-16 111.8 -3.3 159 7-173 89-247 (722)
40 PLN03150 hypothetical protein; 99.0 2.1E-09 4.5E-14 108.1 9.0 113 338-450 420-533 (623)
41 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.6E-14 73.5 3.6 61 360-420 1-61 (61)
42 KOG2120 SCF ubiquitin ligase, 98.7 3.1E-10 6.8E-15 97.2 -5.8 180 89-297 186-373 (419)
43 KOG2982 Uncharacterized conser 98.6 6.5E-09 1.4E-13 89.3 0.8 37 216-252 225-262 (418)
44 KOG2982 Uncharacterized conser 98.6 2.9E-08 6.3E-13 85.4 2.4 84 210-293 194-285 (418)
45 KOG2120 SCF ubiquitin ligase, 98.5 2.3E-09 5.1E-14 92.0 -4.6 182 215-420 185-375 (419)
46 KOG0531 Protein phosphatase 1, 98.5 1.2E-08 2.6E-13 98.2 -0.6 218 215-446 95-319 (414)
47 KOG0531 Protein phosphatase 1, 98.5 1.9E-08 4.1E-13 96.8 0.1 129 38-173 70-199 (414)
48 COG5238 RNA1 Ran GTPase-activa 98.5 2.9E-08 6.4E-13 84.2 0.8 197 111-324 90-316 (388)
49 KOG1859 Leucine-rich repeat pr 98.4 3.4E-09 7.4E-14 101.6 -6.7 127 312-446 165-293 (1096)
50 COG5238 RNA1 Ran GTPase-activa 98.4 3.2E-08 7E-13 84.0 -1.0 193 234-446 87-317 (388)
51 KOG1644 U2-associated snRNP A' 98.3 1.1E-06 2.4E-11 71.6 4.8 101 339-441 45-149 (233)
52 KOG4579 Leucine-rich repeat (L 98.2 1.1E-07 2.4E-12 72.2 -2.1 80 362-444 55-135 (177)
53 KOG4579 Leucine-rich repeat (L 98.1 2E-07 4.4E-12 70.8 -2.9 135 311-449 27-163 (177)
54 KOG4341 F-box protein containi 98.0 4E-07 8.7E-12 82.2 -2.8 258 188-445 162-439 (483)
55 PF12799 LRR_4: Leucine Rich r 98.0 8.2E-06 1.8E-10 50.0 3.4 36 409-445 2-37 (44)
56 KOG4341 F-box protein containi 98.0 6.1E-07 1.3E-11 81.1 -2.7 296 138-438 139-458 (483)
57 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.2E-10 49.5 3.2 36 385-421 2-37 (44)
58 KOG3665 ZYG-1-like serine/thre 97.9 3.7E-06 8.1E-11 84.7 1.6 156 64-221 122-281 (699)
59 PRK15386 type III secretion pr 97.8 0.0001 2.3E-09 68.5 9.7 138 259-419 48-188 (426)
60 PF13306 LRR_5: Leucine rich r 97.8 2.8E-05 6E-10 61.6 5.2 124 9-139 5-128 (129)
61 PRK15386 type III secretion pr 97.8 0.00017 3.7E-09 67.2 10.8 135 237-394 50-187 (426)
62 KOG1644 U2-associated snRNP A' 97.8 3.6E-05 7.8E-10 63.0 5.2 123 339-464 22-149 (233)
63 PF13306 LRR_5: Leucine rich r 97.7 0.00011 2.4E-09 58.1 7.3 122 282-434 7-128 (129)
64 KOG3665 ZYG-1-like serine/thre 97.7 2.1E-05 4.6E-10 79.4 3.1 132 16-151 122-264 (699)
65 KOG2123 Uncharacterized conser 97.3 1.5E-05 3.2E-10 68.4 -3.7 96 339-438 22-123 (388)
66 KOG2739 Leucine-rich acidic nu 97.2 0.00028 6E-09 60.5 3.4 86 36-125 39-128 (260)
67 KOG1947 Leucine rich repeat pr 97.2 3E-05 6.6E-10 76.9 -2.7 186 214-410 187-389 (482)
68 KOG2123 Uncharacterized conser 97.1 2.8E-05 6E-10 66.8 -4.1 99 359-461 18-123 (388)
69 KOG2739 Leucine-rich acidic nu 97.0 0.00036 7.8E-09 59.8 2.2 108 352-461 35-149 (260)
70 KOG1947 Leucine rich repeat pr 97.0 0.00012 2.7E-09 72.5 -1.4 238 188-446 186-441 (482)
71 KOG3864 Uncharacterized conser 96.3 0.00091 2E-08 55.0 -0.4 86 360-445 101-189 (221)
72 KOG3864 Uncharacterized conser 95.5 0.0018 4E-08 53.3 -1.7 106 382-487 99-213 (221)
73 PF00560 LRR_1: Leucine Rich R 95.2 0.01 2.2E-07 30.0 1.1 12 410-421 2-13 (22)
74 KOG4308 LRR-containing protein 94.4 0.00024 5.3E-09 68.7 -11.3 189 241-446 89-304 (478)
75 PF00560 LRR_1: Leucine Rich R 94.3 0.027 5.9E-07 28.4 1.4 18 66-84 2-19 (22)
76 KOG0473 Leucine-rich repeat pr 92.9 0.0042 9.1E-08 52.4 -4.9 86 36-125 38-123 (326)
77 PF13504 LRR_7: Leucine rich r 92.2 0.083 1.8E-06 24.6 1.0 8 91-98 4-11 (17)
78 PF13516 LRR_6: Leucine Rich r 91.5 0.07 1.5E-06 27.5 0.4 17 408-424 2-18 (24)
79 smart00370 LRR Leucine-rich re 90.3 0.25 5.4E-06 26.0 1.9 21 88-109 2-22 (26)
80 smart00369 LRR_TYP Leucine-ric 90.3 0.25 5.4E-06 26.0 1.9 21 88-109 2-22 (26)
81 smart00369 LRR_TYP Leucine-ric 89.3 0.32 7E-06 25.5 1.8 13 409-421 3-15 (26)
82 smart00370 LRR Leucine-rich re 89.3 0.32 7E-06 25.5 1.8 13 409-421 3-15 (26)
83 KOG0473 Leucine-rich repeat pr 89.2 0.017 3.7E-07 48.8 -4.7 89 57-149 35-123 (326)
84 KOG4308 LRR-containing protein 83.0 0.019 4.2E-07 55.8 -8.7 61 217-277 235-304 (478)
85 smart00367 LRR_CC Leucine-rich 75.2 1.4 3E-05 23.1 0.7 13 469-481 1-13 (26)
86 TIGR00864 PCC polycystin catio 74.4 1.8 4E-05 50.4 2.0 38 415-452 2-39 (2740)
87 smart00368 LRR_RI Leucine rich 72.1 2.3 5E-05 22.8 1.1 13 409-421 3-15 (28)
88 smart00365 LRR_SD22 Leucine-ri 66.2 5.1 0.00011 21.1 1.6 12 385-396 3-14 (26)
89 smart00364 LRR_BAC Leucine-ric 65.8 4.2 9.1E-05 21.4 1.2 13 409-421 3-15 (26)
90 KOG3763 mRNA export factor TAP 58.1 5.4 0.00012 38.9 1.4 11 360-370 244-254 (585)
91 KOG3763 mRNA export factor TAP 56.9 5.7 0.00012 38.8 1.3 36 359-394 217-254 (585)
92 KOG4242 Predicted myosin-I-bin 53.7 75 0.0016 30.9 7.9 37 89-125 215-253 (553)
93 KOG4242 Predicted myosin-I-bin 46.0 2.2E+02 0.0048 27.8 9.6 111 361-471 355-484 (553)
94 TIGR00864 PCC polycystin catio 28.0 51 0.0011 39.6 3.1 31 391-421 2-32 (2740)
95 PF05725 FNIP: FNIP Repeat; I 23.3 1E+02 0.0023 18.5 2.6 30 433-463 13-42 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.1e-50 Score=429.46 Aligned_cols=470 Identities=40% Similarity=0.651 Sum_probs=339.5
Q ss_pred CCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccc
Q 041473 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIP 81 (488)
Q Consensus 2 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 81 (488)
|.+.+.+|..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence 44455555555555666666665555555555555556666666666665555555555556666666666665555555
Q ss_pred hhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCC-ccccc
Q 041473 82 FSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLY 160 (488)
Q Consensus 82 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~ 160 (488)
..+.++++|++|++++|.+.+.+|..+. .+++|+.|++++|.+....|..+..+++|++|++++|.+.+..+. +..++
T Consensus 230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred hhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 5555666666666666655545554444 455666666666655555555555566666666666655544333 45566
Q ss_pred ccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCC
Q 041473 161 KLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN 240 (488)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 240 (488)
+|+.+++++|.+.. .....+..+++|+.++++.+.+.+..+..+... ++|+.+++++|.+....|.++..+++
T Consensus 309 ~L~~L~l~~n~~~~------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 309 NLEILHLFSNNFTG------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred CCcEEECCCCccCC------cCChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCC
Confidence 66666666555443 222334556667777777776666666655555 46777777777776666666666777
Q ss_pred CCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccC
Q 041473 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSN 320 (488)
Q Consensus 241 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 320 (488)
|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..++.|+.+++++|.+.+..+..+..+++|+.|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 77777777777666666777778888888888887777777777888888888888888877777777788888888888
Q ss_pred CcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccC
Q 041473 321 NNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400 (488)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 400 (488)
|.+.+.+|..+ ....+ ++|++++|++.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.++...
T Consensus 462 n~~~~~~p~~~-~~~~L-~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 462 NKFFGGLPDSF-GSKRL-ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539 (968)
T ss_pred ceeeeecCccc-ccccc-eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence 88876676654 33445 88999999998888888999999999999999999889999999999999999999999888
Q ss_pred cccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCccccccccccCcc
Q 041473 401 PSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISELHLSTC 480 (488)
Q Consensus 401 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~~~~l~~~~c 480 (488)
|..|..+++|+.|++++|++++.+|..+.++++|+.+++++|++.+.+|..+.+..+....+.|||..|++-..-..+.|
T Consensus 540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c 619 (968)
T PLN00113 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPC 619 (968)
T ss_pred ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCC
Confidence 99999999999999999999999999999999999999999999999998888888888899999999987655455666
Q ss_pred h
Q 041473 481 S 481 (488)
Q Consensus 481 ~ 481 (488)
.
T Consensus 620 ~ 620 (968)
T PLN00113 620 K 620 (968)
T ss_pred c
Confidence 4
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-49 Score=422.61 Aligned_cols=460 Identities=33% Similarity=0.542 Sum_probs=222.8
Q ss_pred CCccccCcccccCCccCcEEeccCCCCCCCcCcc-ccCCcccccccccccccccccchhhcCCCCccEEEeecccccccc
Q 041473 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSS-FGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEI 80 (488)
Q Consensus 2 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 80 (488)
|.+.+.++.+|..+++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+..|. ..+++|++|++++|.+.+..
T Consensus 79 ~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~ 156 (968)
T PLN00113 79 KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEI 156 (968)
T ss_pred CCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccC
Confidence 5566777777777777777777777776555543 34666677777766666544442 33455555555555555455
Q ss_pred chhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCC-cccc
Q 041473 81 PFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENL 159 (488)
Q Consensus 81 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l 159 (488)
|..+.++++|++|++++|.+.+.+|..+. .+++|++|++++|.+....|..+..+++|++|++++|.+.+..+. +..+
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 55555555555555555555444454443 455555555555555444455555555555555555554433332 4455
Q ss_pred cccceeeccccccCCCCCCch------------------hhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEE
Q 041473 160 YKLQRVSFSLNHLGNGEKDDL------------------EFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFT 221 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~------------------~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 221 (488)
++|+.|++++|.+.......+ .....+..+++|+.++++.|.+.+.++..+... ++|+.|+
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~ 314 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL-QNLEILH 314 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC-CCCcEEE
Confidence 555555555544432000000 111223333444444444444443333333333 2444444
Q ss_pred ccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCC
Q 041473 222 VGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG 301 (488)
Q Consensus 222 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 301 (488)
+.+|.+....|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+
T Consensus 315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence 44444444444444444444444444444443334344444444444444444433333333333444444444444444
Q ss_pred CCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccc
Q 041473 302 SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLG 381 (488)
Q Consensus 302 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 381 (488)
..|..+..+++|+.|++++|.+++..|..+..++.+ +++++++|.+.+..+..+..+++|+.|++++|.+.+..|..+
T Consensus 395 ~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~- 472 (968)
T PLN00113 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV-YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF- 472 (968)
T ss_pred cCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC-CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-
Confidence 444444444555555555555544444444444444 445555554444444433344444444444444433333322
Q ss_pred cCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-ccccCCccee
Q 041473 382 SCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVFSNSSAI 460 (488)
Q Consensus 382 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l 460 (488)
..++|+.|++++|++....+..+.++++|+.|++++|.+.+.+|..+..+++|++|++++|.+++..|. .+.+++|+.|
T Consensus 473 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 552 (968)
T PLN00113 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552 (968)
T ss_pred ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEE
Confidence 224444444444444444444444455555555555555544555555555555555555555544432 3334455555
Q ss_pred eecCCCC
Q 041473 461 SLDGNDN 467 (488)
Q Consensus 461 ~l~~n~~ 467 (488)
++++|..
T Consensus 553 ~Ls~N~l 559 (968)
T PLN00113 553 DLSQNQL 559 (968)
T ss_pred ECCCCcc
Confidence 5555543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5e-39 Score=293.15 Aligned_cols=380 Identities=24% Similarity=0.246 Sum_probs=268.8
Q ss_pred cccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCC
Q 041473 44 FLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNN 123 (488)
Q Consensus 44 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (488)
+|++++|++..+.+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+ .+...-...++.||.||++.|
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhc
Confidence 3555555555555555555555555555555555 45544444445555555555555 333333334555555555555
Q ss_pred cccccCCccccCCCCCceeecccCCCccCCCC-cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcc
Q 041473 124 QFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNF 202 (488)
Q Consensus 124 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~ 202 (488)
.+.......|..-.++++|++++|.++..... |..+. +|..+.++.|++
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln------------------------------sL~tlkLsrNri 209 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN------------------------------SLLTLKLSRNRI 209 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccc------------------------------hheeeecccCcc
Confidence 55433333344444555555555554433222 33333 445555555555
Q ss_pred cccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCcc
Q 041473 203 GGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSS 282 (488)
Q Consensus 203 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 282 (488)
. .+|...++..++|+.|++.+|.+...--..|.++++|+.|.+..|.+.....+.|..+.++++|++..|++......+
T Consensus 210 t-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 210 T-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred c-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence 4 344444442368888888888876544556788999999999999888777888888999999999999988777788
Q ss_pred ccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCc
Q 041473 283 VGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNL 362 (488)
Q Consensus 283 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L 362 (488)
+.+++.|+.|++++|.+..+-++++..+++|++|+++.|.++...+..+..+..+ +.|+++.|++...-...|..+++|
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L-e~LnLs~Nsi~~l~e~af~~lssL 367 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL-EELNLSHNSIDHLAEGAFVGLSSL 367 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh-hhhcccccchHHHHhhHHHHhhhh
Confidence 8899999999999999988888888888999999999999884455555555555 889999999887777788889999
Q ss_pred cEEEccCCcccCCC---ccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeec
Q 041473 363 GVLDVSENKLSGEI---PNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNL 439 (488)
Q Consensus 363 ~~L~l~~n~l~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 439 (488)
++|||++|.+...+ ...|.++++|++|.+.||++..+...+|.+++.|+.|+|.+|.+.++.+++|..+ .|++|-+
T Consensus 368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 99999999876433 4567889999999999999988888899999999999999999998899999888 8999888
Q ss_pred cCcccccccCCccccCCcc
Q 041473 440 SSNHFEGEVPIKGVFSNSS 458 (488)
Q Consensus 440 ~~n~~~~~~~~~~~~~~L~ 458 (488)
..-.+.|+|.-.|..+=|.
T Consensus 447 nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 447 NSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred cccceEEeccHHHHHHHHH
Confidence 8878888777666554443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-38 Score=290.01 Aligned_cols=395 Identities=21% Similarity=0.218 Sum_probs=307.0
Q ss_pred ccccccccccccccchhhcCC--CCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEc
Q 041473 43 EFLSAAVNQFVGQIPETLSEL--KRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120 (488)
Q Consensus 43 ~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 120 (488)
+.|+.++..+.......+..+ ..-+.|++++|.+....+..|.++++|+.+++..|.++ .+|.... ...+|+.|++
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L 132 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDL 132 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEee
Confidence 345555555543222222222 22445777777777666666777777777777777777 7776554 4556777777
Q ss_pred CCCcccccCCccccCCCCCceeecccCCCccCCC-CcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCC
Q 041473 121 GNNQFTGPIPASISNASNLMRLTIQKNGFSGKVP-SLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISI 199 (488)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~ 199 (488)
.+|.|.....+.+..++.|+.+|++.|.+..... .+..-.++++|++++|.++.
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~------------------------- 187 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT------------------------- 187 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc-------------------------
Confidence 7777765556666677777777777776654432 25555566666666655543
Q ss_pred CcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCC
Q 041473 200 NNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEI 279 (488)
Q Consensus 200 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 279 (488)
.-...+..+ .+|..|.+++|+++...+..|.++++|+.|++..|.+.....-.|+++++|+.|.+..|.+....
T Consensus 188 -----l~~~~F~~l-nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~ 261 (873)
T KOG4194|consen 188 -----LETGHFDSL-NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD 261 (873)
T ss_pred -----ccccccccc-chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc
Confidence 323333444 48999999999999888888999999999999999987555667899999999999999999888
Q ss_pred CccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCC
Q 041473 280 PSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGIL 359 (488)
Q Consensus 280 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l 359 (488)
+..|..+.++++|++..|+++....+++.+++.|+.|+++.|.+...-+..-.....+ ++|++++|++....++.|..+
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL-~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL-KELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred Ccceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc-eeEeccccccccCChhHHHHH
Confidence 8899999999999999999998888999999999999999999884444444444444 999999999998889999999
Q ss_pred CCccEEEccCCcccCCCccccccCCCCCEEecCCccccc---cCcccccCCCCCCEEeccCcccCCccchhhhccccCce
Q 041473 360 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG---NIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQN 436 (488)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 436 (488)
..|++|.|++|.+......+|..+++|++|++++|.+.- ...++|.++++|++|++.+|++.++...+|.+++.|++
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 999999999999985556778899999999999998763 45678999999999999999999888899999999999
Q ss_pred eeccCcccccccCCccccCCcceeeecCCCCcccc
Q 041473 437 LNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 437 L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
||+.+|.+-..-|..=....|++|.+..-...|+|
T Consensus 421 LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDC 455 (873)
T ss_pred ecCCCCcceeecccccccchhhhhhhcccceEEec
Confidence 99999999754443222349999999988888877
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.4e-38 Score=275.37 Aligned_cols=435 Identities=28% Similarity=0.405 Sum_probs=264.2
Q ss_pred cccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCC
Q 041473 11 KLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSL 90 (488)
Q Consensus 11 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 90 (488)
.+.++..+.++++++|.+. ..|.+.+.+..++.+++++|++. .+|..++.+.+|+.++.++|.+. .++..++.+-.+
T Consensus 63 dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l 139 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL 139 (565)
T ss_pred hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence 3445555556666555555 45555555555666666665554 44555555555666666655555 455555555555
Q ss_pred cEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeecccc
Q 041473 91 SLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLN 170 (488)
Q Consensus 91 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 170 (488)
..++..+|.+. .+|..++ .+.++..+++.+|++. ..|+..-++..|++++...|-+...++.++.+.+|.-+++..|
T Consensus 140 ~dl~~~~N~i~-slp~~~~-~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPEDMV-NLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhccccccc-cCchHHH-HHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc
Confidence 55555555555 5555554 3455555555555555 2232222355555555555555555555555555555555555
Q ss_pred ccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCc
Q 041473 171 HLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQ 250 (488)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 250 (488)
.+... ..+..+..|..+.+..|.+. +++....+..+++..|+++++.+. ..|..+.-+.+|++||+++|.
T Consensus 217 ki~~l--------Pef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 217 KIRFL--------PEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred ccccC--------CCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCc
Confidence 54322 22333344444444444332 344444333345555555555554 344445555555555555555
Q ss_pred CCCCccccccCCCCccEEEcccccccCCC--------------------------------------Cc---cccCCccc
Q 041473 251 FTGRILGSIGDLQKLQRLRLKGNKFLGEI--------------------------------------PS---SVGNLTLL 289 (488)
Q Consensus 251 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--------------------------------------~~---~~~~~~~L 289 (488)
+.+ .+..++++ .|+.|.+.||++...- +. .....-+.
T Consensus 287 is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t 364 (565)
T KOG0472|consen 287 ISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT 364 (565)
T ss_pred ccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence 542 33344444 5555555555442100 00 00112233
Q ss_pred cEEecCCCccCCCCCccccCC---CCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEE
Q 041473 290 FTLSFEGNRLEGSIPSSLGKC---KNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLD 366 (488)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 366 (488)
+.|++++-.++ ..|+.+..- .-.+.++++.|++. ++|..+.....+.+.+.+++|.+. .+|..+..+++|..|+
T Consensus 365 kiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~ 441 (565)
T KOG0472|consen 365 KILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLD 441 (565)
T ss_pred hhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeee
Confidence 34444444443 223222111 12455666666665 666666655555555666666665 6667778899999999
Q ss_pred ccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 367 VSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 367 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
+++|.+. .+|..+..+..|+.|+++.|++. ..|.....+..++.+-.++|++....+..+.++.+|..||+.+|.+..
T Consensus 442 L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~ 519 (565)
T KOG0472|consen 442 LSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ 519 (565)
T ss_pred cccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh
Confidence 9999988 88988888999999999999887 688888888889999999999998888889999999999999999998
Q ss_pred ccCCccccCCcceeeecCCCCc
Q 041473 447 EVPIKGVFSNSSAISLDGNDNL 468 (488)
Q Consensus 447 ~~~~~~~~~~L~~l~l~~n~~~ 468 (488)
..|..+.+++|+.|++.|||.-
T Consensus 520 IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 520 IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CChhhccccceeEEEecCCccC
Confidence 8889999999999999999975
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=1.1e-35 Score=259.65 Aligned_cols=443 Identities=30% Similarity=0.421 Sum_probs=365.8
Q ss_pred cCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecc
Q 041473 17 KLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFP 96 (488)
Q Consensus 17 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 96 (488)
.++.+++++|.+. .+...+.++..|..+++++|... ..|.+++.+..+..++.++|.++ .+|..+..+.+++.++.+
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 4678889999888 55667788999999999999987 56777899999999999999998 899999999999999999
Q ss_pred cCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCC
Q 041473 97 VNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGE 176 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 176 (488)
.|++. ++++.++ .+..++.++..+|+++ ..|+.+..+.++..+++.+|++....+....++.|+.++...|.++
T Consensus 123 ~n~~~-el~~~i~-~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~--- 196 (565)
T KOG0472|consen 123 SNELK-ELPDSIG-RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE--- 196 (565)
T ss_pred cccee-ecCchHH-HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh---
Confidence 99998 9999998 6889999999999998 7899999999999999999999988888777999999999988887
Q ss_pred CCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCcc
Q 041473 177 KDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRIL 256 (488)
Q Consensus 177 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 256 (488)
.....++.+.+|+.+++..|.+. ..| .+... ..|++++++.+.+.-.......+++++..||+.+|++.+ .|
T Consensus 197 ----tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gc-s~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~P 268 (565)
T KOG0472|consen 197 ----TLPPELGGLESLELLYLRRNKIR-FLP-EFPGC-SLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VP 268 (565)
T ss_pred ----cCChhhcchhhhHHHHhhhcccc-cCC-CCCcc-HHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-Cc
Confidence 45566778889999999999876 334 33333 479999999999874444555689999999999999984 56
Q ss_pred ccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCC----------------------------------
Q 041473 257 GSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGS---------------------------------- 302 (488)
Q Consensus 257 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------------------------------- 302 (488)
..+..+.+|.+|++++|.++ ..|..++++ .|+.|.+.+|++..+
T Consensus 269 de~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~ 346 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET 346 (565)
T ss_pred hHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence 66777899999999999998 677788888 899998888876410
Q ss_pred ----CC---ccccCCCCCcEEEccCCcCccccchhhhcccC--ceeEEEccCCcccccCCccccCCCCc-cEEEccCCcc
Q 041473 303 ----IP---SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSS--LSIYLDLSKNQLNGPLPSNFGILKNL-GVLDVSENKL 372 (488)
Q Consensus 303 ----~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--l~~~L~l~~~~~~~~~~~~~~~l~~L-~~L~l~~n~l 372 (488)
.+ .......+.+.|++++-+++ .+|..++.... ....++++.|++. .+|..+..+..+ +.+.+++|.+
T Consensus 347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 347 AMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred cCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence 00 01111346788888888888 77777665443 3468899999998 777776665554 4566666766
Q ss_pred cCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-c
Q 041473 373 SGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-K 451 (488)
Q Consensus 373 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~ 451 (488)
. -.|..++.+++|+.|++++|.+. ..|..+..+..|+.|+++.|+|. .+|+++.....++.+-.++|.+....+. .
T Consensus 425 s-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l 501 (565)
T KOG0472|consen 425 S-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGL 501 (565)
T ss_pred c-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHh
Confidence 6 78888999999999999999988 67888888889999999999998 7898888888889999989998755444 6
Q ss_pred cccCCcceeeecCCCCc--------cccccccccCcchhh
Q 041473 452 GVFSNSSAISLDGNDNL--------CGGISELHLSTCSIK 483 (488)
Q Consensus 452 ~~~~~L~~l~l~~n~~~--------c~~~~~l~~~~c~~~ 483 (488)
..+.+|+.|++..|... |.++.+|+++|+++.
T Consensus 502 ~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 77899999999999876 889999999999865
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.4e-33 Score=256.17 Aligned_cols=371 Identities=26% Similarity=0.383 Sum_probs=254.5
Q ss_pred CCccCcEEeccCCCCCC-CcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcE
Q 041473 14 SLSKLRTLAVHFNNLSG-EIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSL 92 (488)
Q Consensus 14 ~~~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 92 (488)
.+|.+|-.|+++|.+++ .+|.....+++++.|-+...++. .+|+.++.+..|+.|.+++|++. .+-..+..++.||.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 34455555555555552 44444444555555554444443 33444444445555555554444 33334444444444
Q ss_pred EecccCCcC-CCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccc
Q 041473 93 LDFPVNQLQ-GSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNH 171 (488)
Q Consensus 93 L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 171 (488)
+.+..|.+. .-+|..++ .+..|..|++++|++. ..|..+....++-+|++++|.+.
T Consensus 83 v~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie--------------------- 139 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE--------------------- 139 (1255)
T ss_pred HhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc---------------------
Confidence 444444332 13344444 3444444444444444 33443433334444444433332
Q ss_pred cCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcC
Q 041473 172 LGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQF 251 (488)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 251 (488)
.+|..+......|-.|++++|++. .+|..+..+..|++|.+++|.+
T Consensus 140 ---------------------------------tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 140 ---------------------------------TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred ---------------------------------cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence 233332222246667777777765 5566688888899999999887
Q ss_pred CCCccccccCCCCccEEEccccccc-CCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchh
Q 041473 252 TGRILGSIGDLQKLQRLRLKGNKFL-GEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTE 330 (488)
Q Consensus 252 ~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 330 (488)
...-..-+..+.+|+.|++++..-+ ..+|..+..+.+|..++++.|.+. ..|..+-.+++|+.|++++|+++ .+...
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~ 263 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMT 263 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeecc
Confidence 6555555667778888888875432 357778888999999999999988 88888889999999999999998 77767
Q ss_pred hhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc-CCCccccccCCCCCEEecCCccccccCcccccCCCC
Q 041473 331 VIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS-GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRG 409 (488)
Q Consensus 331 ~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 409 (488)
...+..+ .+|+++.|+++ .+|.++..+++|+.|...+|.++ .-+|..+..+..|+.+..++|.+. ..|+.+..|++
T Consensus 264 ~~~W~~l-EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~k 340 (1255)
T KOG0444|consen 264 EGEWENL-ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVK 340 (1255)
T ss_pred HHHHhhh-hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHH
Confidence 7777777 78999999998 88999999999999999999876 456888999999999999999887 88999999999
Q ss_pred CCEEeccCcccCCccchhhhccccCceeeccCcccccccC
Q 041473 410 IQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 410 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
|+.|.|+.|++. .+|+++.-++.|+.||++.|+.....|
T Consensus 341 L~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 341 LQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 999999999998 899999999999999999998775544
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=6.9e-33 Score=266.17 Aligned_cols=434 Identities=26% Similarity=0.337 Sum_probs=274.6
Q ss_pred cccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhh
Q 041473 5 VGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSI 84 (488)
Q Consensus 5 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 84 (488)
....-++..+.-+|++|++++|.+. .+|..+..+++|+.|+++.|.|. ..|....++.+|+++.|.+|.+. ..|..+
T Consensus 34 l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~ 110 (1081)
T KOG0618|consen 34 LSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI 110 (1081)
T ss_pred ccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhH
Confidence 3333334444445888999888777 77888888888999999988886 45577888889999999988887 788888
Q ss_pred hccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCC-------------------cccccCCccccCCCCCceeecc
Q 041473 85 YNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNN-------------------QFTGPIPASISNASNLMRLTIQ 145 (488)
Q Consensus 85 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-------------------~~~~~~~~~~~~l~~L~~L~l~ 145 (488)
..+++|++|+++.|.+. .+|.-+. .+..++.+..++| .+...++..+..+.+ .++++
T Consensus 111 ~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr 186 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLR 186 (1081)
T ss_pred HhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecc
Confidence 88899999999998887 7776555 4555555666555 222222222222222 24444
Q ss_pred cCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEcccc
Q 041473 146 KNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNN 225 (488)
Q Consensus 146 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 225 (488)
+|... ..++..+.+|+.+....+.+..... .-++++.+..+.+...... ....+.++++++++.+
T Consensus 187 ~N~~~--~~dls~~~~l~~l~c~rn~ls~l~~----------~g~~l~~L~a~~n~l~~~~---~~p~p~nl~~~dis~n 251 (1081)
T KOG0618|consen 187 YNEME--VLDLSNLANLEVLHCERNQLSELEI----------SGPSLTALYADHNPLTTLD---VHPVPLNLQYLDISHN 251 (1081)
T ss_pred cchhh--hhhhhhccchhhhhhhhcccceEEe----------cCcchheeeeccCcceeec---cccccccceeeecchh
Confidence 44333 2223334444444433333221110 1133444444444333111 1112246777777777
Q ss_pred ccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCc
Q 041473 226 QLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPS 305 (488)
Q Consensus 226 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 305 (488)
++. .+|.|+..+.+|+.++..+|.+.. .+..+....+|+.|.+..|.+. ..|....+++.|++|++..|.+. ..|+
T Consensus 252 ~l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~ 327 (1081)
T KOG0618|consen 252 NLS-NLPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPD 327 (1081)
T ss_pred hhh-cchHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccch
Confidence 766 344777777777777777776643 3333444566777777777666 44445566777777777777766 4444
Q ss_pred ccc-CCC-CCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccC
Q 041473 306 SLG-KCK-NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSC 383 (488)
Q Consensus 306 ~~~-~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 383 (488)
.+. ... +|..++.+.+++. ..|..-......++.|.+.+|.+++.....+..+.+|+.|+|++|++.......+.++
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl 406 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL 406 (1081)
T ss_pred HHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhch
Confidence 322 222 2566666666655 4442222222233667788888876666667777888888888888873333557778
Q ss_pred CCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccc-cCCccccCCcceeee
Q 041473 384 VRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGE-VPIKGVFSNSSAISL 462 (488)
Q Consensus 384 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~l~l 462 (488)
..|++|+++||.++ ..|..+..++.|++|...+|.+. ..| .+..+++|+.+|++.|.++.- +|...--++|+.|++
T Consensus 407 e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 407 EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDL 483 (1081)
T ss_pred HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeec
Confidence 88888888888887 56678888888888888888887 555 677888888888888888753 332222278888888
Q ss_pred cCCCCc
Q 041473 463 DGNDNL 468 (488)
Q Consensus 463 ~~n~~~ 468 (488)
+||+|.
T Consensus 484 SGN~~l 489 (1081)
T KOG0618|consen 484 SGNTRL 489 (1081)
T ss_pred cCCccc
Confidence 888874
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.5e-32 Score=253.17 Aligned_cols=360 Identities=28% Similarity=0.392 Sum_probs=284.9
Q ss_pred CCCcc-ccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccc-c
Q 041473 1 FNELV-GKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLS-G 78 (488)
Q Consensus 1 ~~~~~-~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~ 78 (488)
+|+|+ +..|.....+.+++-|.+..+.+. .+|..++.+.+|++|.+++|++. .+...++.++.||.+++++|+++ .
T Consensus 16 gNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKns 93 (1255)
T KOG0444|consen 16 GNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNS 93 (1255)
T ss_pred CCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccC
Confidence 58888 789999999999999999999998 88999999999999999999986 44566899999999999999997 3
Q ss_pred ccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCccc
Q 041473 79 EIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLEN 158 (488)
Q Consensus 79 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 158 (488)
-+|..+..+..|..|||++|++. +.|..+- ..+++-.|++++|+|..+....+.++..|-.|++++|.+...+|.+..
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RR 171 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRR 171 (1255)
T ss_pred CCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHH
Confidence 57888899999999999999999 9999887 688999999999999965556777899999999999999999999999
Q ss_pred ccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccc-cccchhccC
Q 041473 159 LYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLF-GNIPSGLGN 237 (488)
Q Consensus 159 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~ 237 (488)
+..|++|++++|.+.. .-...+..++.|+++.+++ .+-+ ..+|..+..
T Consensus 172 L~~LqtL~Ls~NPL~h------fQLrQLPsmtsL~vLhms~-------------------------TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNH------FQLRQLPSMTSLSVLHMSN-------------------------TQRTLDNIPTSLDD 220 (1255)
T ss_pred HhhhhhhhcCCChhhH------HHHhcCccchhhhhhhccc-------------------------ccchhhcCCCchhh
Confidence 9999999999988653 2223333334444444443 3222 235666777
Q ss_pred CCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEE
Q 041473 238 LVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLD 317 (488)
Q Consensus 238 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 317 (488)
+.+|..++++.|.+. ..|+.+..+++|+.|++++|.++ .+......-.+|++|+++.|+++ ..|.++..+++|+.|.
T Consensus 221 l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLY 297 (1255)
T ss_pred hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence 888888888888876 67778888888999999988887 33444555678888888888888 8888888888888888
Q ss_pred ccCCcCcc-ccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccc
Q 041473 318 LSNNNLTG-TIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFF 396 (488)
Q Consensus 318 l~~~~~~~-~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 396 (488)
+.+|+++- -+|..++.+..+ +.+..++|.+. ..|+.++.+.+|+.|.|+.|.+- .+|+++.-++.|+.|++..|.-
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~L-evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQL-EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hccCcccccCCccchhhhhhh-HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 88887652 367677766666 56666777666 66777777777777777777776 6777777777777777777754
Q ss_pred cccCc
Q 041473 397 QGNIP 401 (488)
Q Consensus 397 ~~~~~ 401 (488)
....|
T Consensus 375 LVMPP 379 (1255)
T KOG0444|consen 375 LVMPP 379 (1255)
T ss_pred ccCCC
Confidence 43333
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=1.9e-32 Score=263.22 Aligned_cols=435 Identities=28% Similarity=0.328 Sum_probs=336.4
Q ss_pred CCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccc
Q 041473 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIP 81 (488)
Q Consensus 2 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 81 (488)
|+-.+..|..+..+++|+.|+++.|.+. ..|.+.+++.+|++++|.+|... ..|..+..+++|.+|+++.|... ..|
T Consensus 54 nn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~P 130 (1081)
T KOG0618|consen 54 NNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIP 130 (1081)
T ss_pred ccccccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCc
Confidence 5667888899999999999999999888 78889999999999999999876 78889999999999999999887 566
Q ss_pred hhhhccCCCcEEecccC-------------------CcCCCCCcchhccCCCCc-EEEcCCCcccccCCccccCCCCCce
Q 041473 82 FSIYNLSSLSLLDFPVN-------------------QLQGSLPSDIGFTLPNLE-VLNFGNNQFTGPIPASISNASNLMR 141 (488)
Q Consensus 82 ~~~~~l~~L~~L~l~~~-------------------~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~ 141 (488)
..+..+..+..+..++| .+.+.++..+. .++ .|+++.|.+. ......+.+|+.
T Consensus 131 l~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~----~l~~~ldLr~N~~~---~~dls~~~~l~~ 203 (1081)
T KOG0618|consen 131 LVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY----NLTHQLDLRYNEME---VLDLSNLANLEV 203 (1081)
T ss_pred hhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh----hhheeeecccchhh---hhhhhhccchhh
Confidence 66666655555555555 33333333332 344 4899888775 334567888888
Q ss_pred eecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEE
Q 041473 142 LTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFT 221 (488)
Q Consensus 142 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 221 (488)
+....|++... ...-++++.+..+.|.+... ..-.-..+++.++++.+.+. .+++|+... .+++.+.
T Consensus 204 l~c~rn~ls~l---~~~g~~l~~L~a~~n~l~~~--------~~~p~p~nl~~~dis~n~l~-~lp~wi~~~-~nle~l~ 270 (1081)
T KOG0618|consen 204 LHCERNQLSEL---EISGPSLTALYADHNPLTTL--------DVHPVPLNLQYLDISHNNLS-NLPEWIGAC-ANLEALN 270 (1081)
T ss_pred hhhhhcccceE---EecCcchheeeeccCcceee--------ccccccccceeeecchhhhh-cchHHHHhc-ccceEec
Confidence 88887766432 12346778888887776521 11223468999999999887 456888887 5999999
Q ss_pred ccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCcc-ccEEecCCCccC
Q 041473 222 VGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTL-LFTLSFEGNRLE 300 (488)
Q Consensus 222 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~ 300 (488)
...|++. ..|..+....+|+.|.+..|.+.. .+.....+..|++|++..|.+....+..+..... ++.++.+.+.+.
T Consensus 271 ~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 271 ANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred ccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc
Confidence 9999985 567778888999999999998874 4555677899999999999988544444444444 778888877776
Q ss_pred CCCC-ccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccc
Q 041473 301 GSIP-SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNS 379 (488)
Q Consensus 301 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 379 (488)
..| ..=..++.|+.|++.+|.+++..-..+.+.+.+ +.|++++|++.......+.+++.|+.|+++||.++ .+|..
T Consensus 349 -~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL-KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 349 -TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL-KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred -ccccccchhhHHHHHHHHhcCcccccchhhhccccce-eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence 333 112235679999999999998777777777777 99999999999666678889999999999999999 88999
Q ss_pred cccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccc-cccCCccccCCcc
Q 041473 380 LGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFE-GEVPIKGVFSNSS 458 (488)
Q Consensus 380 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~ 458 (488)
+.+++.|+.|...+|++. ..| .+.+++.|+.+|++.|+++......-...++|++||++||... -....+..++++.
T Consensus 426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLS 503 (1081)
T ss_pred HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhh
Confidence 999999999999999998 677 7788999999999999998653323233489999999999753 2344456677777
Q ss_pred eeeecCCC
Q 041473 459 AISLDGND 466 (488)
Q Consensus 459 ~l~l~~n~ 466 (488)
..+++-++
T Consensus 504 ~~~i~~~~ 511 (1081)
T KOG0618|consen 504 QMDITLNN 511 (1081)
T ss_pred heecccCC
Confidence 77777663
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.3e-23 Score=224.48 Aligned_cols=344 Identities=19% Similarity=0.213 Sum_probs=193.4
Q ss_pred ccchhhcCCCCccEEEeecccc------ccccchhhhccC-CCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccc
Q 041473 55 QIPETLSELKRMRSIGFGANKL------SGEIPFSIYNLS-SLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG 127 (488)
Q Consensus 55 ~~~~~~~~l~~L~~L~l~~~~l------~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 127 (488)
..+.+|.++++|+.|.+..+.. ...+|..+..++ +|+.|.+.++.+. .+|..+ .+.+|+.|++.++++.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence 3445678888888888865432 223556666654 5888888888777 777766 3678888888888776
Q ss_pred cCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCc
Q 041473 128 PIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLP 207 (488)
Q Consensus 128 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~ 207 (488)
..+..+..+++|+.++++++......+.+..+++|+.|++.+|.... .....+..+++|+.++++++
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~------~lp~si~~L~~L~~L~L~~c------- 691 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV------ELPSSIQYLNKLEDLDMSRC------- 691 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc------ccchhhhccCCCCEEeCCCC-------
Confidence 56666777888888888876655555666777777777776654321 22233344444555555444
Q ss_pred hhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCc
Q 041473 208 ESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLT 287 (488)
Q Consensus 208 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 287 (488)
.....+|..+ .+++|+.|++++|......+. ...+|+.|+++++.+. .+|..+ .++
T Consensus 692 ------------------~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~ 747 (1153)
T PLN03210 692 ------------------ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLE 747 (1153)
T ss_pred ------------------CCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-ccc
Confidence 3222233222 344455555554432211111 1234555555555443 222222 344
Q ss_pred cccEEecCCCccC-------CCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCC
Q 041473 288 LLFTLSFEGNRLE-------GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360 (488)
Q Consensus 288 ~L~~L~l~~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~ 360 (488)
+|++|.+.++... ...+.....+++|+.|++++|+....+|..+..++.+ +.|++++|.....+|... .++
T Consensus 748 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L-~~L~Ls~C~~L~~LP~~~-~L~ 825 (1153)
T PLN03210 748 NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL-EHLEIENCINLETLPTGI-NLE 825 (1153)
T ss_pred ccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC-CEEECCCCCCcCeeCCCC-Ccc
Confidence 4554444432211 0011111223456666666665444556555555555 566666654332444433 456
Q ss_pred CccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeecc
Q 041473 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLS 440 (488)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 440 (488)
+|++|++++|.....+|.. .++|++|++++|.+. ..|..+..+++|+.|++++|+-...+|..+..+++|+.++++
T Consensus 826 sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901 (1153)
T ss_pred ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence 6777777776544344432 356777777777666 456666667777777777765444555566666777777777
Q ss_pred Ccccc
Q 041473 441 SNHFE 445 (488)
Q Consensus 441 ~n~~~ 445 (488)
+|...
T Consensus 902 ~C~~L 906 (1153)
T PLN03210 902 DCGAL 906 (1153)
T ss_pred CCccc
Confidence 77533
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=2.9e-27 Score=206.85 Aligned_cols=399 Identities=21% Similarity=0.189 Sum_probs=225.5
Q ss_pred cCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeec-cccccccchhhhccCCCcEEec
Q 041473 17 KLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGA-NKLSGEIPFSIYNLSSLSLLDF 95 (488)
Q Consensus 17 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l 95 (488)
.-..+.|..|.|+.+.+.+|+.+++|+.|+|++|.|..+.|++|.++++|..|.+.+ |.|+......|.++..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456778888888877788888888888888888888888888888888888877777 7888555567788888888888
Q ss_pred ccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceee--ccccccC
Q 041473 96 PVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVS--FSLNHLG 173 (488)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~--l~~~~~~ 173 (488)
..|++. .++...+..++++..|.+.+|.+.......|..+..++.+.+..|++...+. |+++- +..+.+.
T Consensus 148 Nan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn-------L~wla~~~a~~~ie 219 (498)
T KOG4237|consen 148 NANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN-------LPWLADDLAMNPIE 219 (498)
T ss_pred Chhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc-------cchhhhHHhhchhh
Confidence 888887 8888877788888888888888874444477788888888887776432211 11110 0000000
Q ss_pred CCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEcccccccccc-chhccCCCCCCEEEccCCcCC
Q 041473 174 NGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNI-PSGLGNLVNLELLDLGDNQFT 252 (488)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~ 252 (488)
.. .+....-..+...++..+-...+......+.+-....|...... ...|..+++|++|++++|+++
T Consensus 220 ts------------garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 220 TS------------GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred cc------------cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 00 00000000000001100000000000000100011112111111 223556666666666666666
Q ss_pred CCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccc-cchhh
Q 041473 253 GRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGT-IPTEV 331 (488)
Q Consensus 253 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~ 331 (488)
.+...+|.+...+++|.+..|.+.......|.++..|+.|++++|+++...|.+|.....|.+|++-.|++.-. --+++
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl 367 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWL 367 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHH
Confidence 66666666666666666666666555555566666666666666666666666666666666666655543200 00000
Q ss_pred h--------------cccCceeEEEccCCccc---ccCCc---------cccCCCCccE-EEccCCcccCCCccccccCC
Q 041473 332 I--------------GLSSLSIYLDLSKNQLN---GPLPS---------NFGILKNLGV-LDVSENKLSGEIPNSLGSCV 384 (488)
Q Consensus 332 ~--------------~~~~l~~~L~l~~~~~~---~~~~~---------~~~~l~~L~~-L~l~~n~l~~~~~~~~~~~~ 384 (488)
. ..+..++.+.++...+. ...|+ .-..++.+.+ ...++..++ .+|..+ ..
T Consensus 368 ~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i--P~ 444 (498)
T KOG4237|consen 368 GEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI--PV 444 (498)
T ss_pred HHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC--Cc
Confidence 0 01111123333333222 11111 1112233333 233333444 666555 34
Q ss_pred CCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCc
Q 041473 385 RLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442 (488)
Q Consensus 385 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 442 (488)
.-+++++.+|.++.+..+ .+.+| .+++++|+++......|.++.+|..|-|+.|
T Consensus 445 d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 445 DVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 677888888888743333 44566 7888888887666667777778877777654
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=9.8e-23 Score=217.81 Aligned_cols=305 Identities=22% Similarity=0.212 Sum_probs=166.4
Q ss_pred ccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecc
Q 041473 66 MRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQ 145 (488)
Q Consensus 66 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 145 (488)
||.|.+.++.+. .+|..+ .+.+|++|++.++.+. .++..+. .+++|+.|+++++......| .+..+++|+.|++.
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS 665 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence 555555555444 344443 2345555555555544 4444333 35555555555443222222 24445555555555
Q ss_pred cCCCccCC-CCcccccccceeecccccc-CCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEcc
Q 041473 146 KNGFSGKV-PSLENLYKLQRVSFSLNHL-GNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVG 223 (488)
Q Consensus 146 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 223 (488)
+|...... ..+..+++|+.|++++|.. ...+ ....++.|+.++++++.....++.. ..+|++|++.
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp--------~~i~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~ 733 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILP--------TGINLKSLYRLNLSGCSRLKSFPDI----STNISWLDLD 733 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccC--------CcCCCCCCCEEeCCCCCCccccccc----cCCcCeeecC
Confidence 44332222 2244555555555554321 1111 0113445555555555332222221 2466777777
Q ss_pred ccccccccchhccCCCCCCEEEccCCcCCC-------CccccccCCCCccEEEcccccccCCCCccccCCccccEEecCC
Q 041473 224 NNQLFGNIPSGLGNLVNLELLDLGDNQFTG-------RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296 (488)
Q Consensus 224 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 296 (488)
++.+. .+|..+ .+++|++|.+.++.... ..+.....+++|+.|++++|.....+|..++++++|+.|++++
T Consensus 734 ~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 734 ETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred CCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 77665 334333 45667777666532211 1111122346778888887766656777777788888888877
Q ss_pred CccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCC
Q 041473 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEI 376 (488)
Q Consensus 297 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 376 (488)
|...+.+|... .+++|+.|++++|.....+|... ..+++|++++|.+. .+|.++..+++|++|++++|.-...+
T Consensus 812 C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~----~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 812 CINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS----TNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CCCcCeeCCCC-CccccCEEECCCCCccccccccc----cccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc
Confidence 75444556554 56778888888875443444322 22367778877776 56667777778888888876444366
Q ss_pred ccccccCCCCCEEecCCcc
Q 041473 377 PNSLGSCVRLEQLVMNGNF 395 (488)
Q Consensus 377 ~~~~~~~~~L~~L~l~~n~ 395 (488)
|..+..+++|+.+++++|.
T Consensus 886 ~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CcccccccCCCeeecCCCc
Confidence 6666677777777777774
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=1.5e-23 Score=183.71 Aligned_cols=391 Identities=21% Similarity=0.210 Sum_probs=263.6
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccc-cccccccchhhcCCCCccEEEeeccccccc
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAV-NQFVGQIPETLSELKRMRSIGFGANKLSGE 79 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 79 (488)
.|.++.+.+.+|+.+++||+|||++|.|+.+-|++|.++++|-.|-+.+ |+|+....++|.++..|+.|.+.-|.+...
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 3889999999999999999999999999999999999999998887777 899988888999999999999999999988
Q ss_pred cchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccc
Q 041473 80 IPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENL 159 (488)
Q Consensus 80 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l 159 (488)
....|..++++..|.+.+|.+. .++...+..+..++++.+..|.+.. .-+++++.... .-+.+. ++..
T Consensus 156 r~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a~~~ie-----tsga 223 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-AMNPIE-----TSGA 223 (498)
T ss_pred hHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc-----ccccchhhhHH-hhchhh-----cccc
Confidence 8899999999999999999998 8887666678889999887765321 11122221110 001110 1111
Q ss_pred cccceeeccccccCCCCCCchhhhhhhccCCCccEE--ecC-CCcccccCchhhhhhhccccEEEccccccccccchhcc
Q 041473 160 YKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMM--EIS-INNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLG 236 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l--~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 236 (488)
.......+....+...+.. .+... ++.+ .+. .+.....-|...++..++|+++++++|.++.+.+.+|.
T Consensus 224 rc~~p~rl~~~Ri~q~~a~--kf~c~------~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDAR--KFLCS------LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred eecchHHHHHHHhcccchh--hhhhh------HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 1111111111111111000 00000 1111 111 11122223333333336888888888888888888888
Q ss_pred CCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCC-----CCCccc----
Q 041473 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG-----SIPSSL---- 307 (488)
Q Consensus 237 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~---- 307 (488)
+...+++|.+..|++.......|.++..|+.|++.+|+++...+..|.....|.+|++-.|++.. +..+|+
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 88888888888888876677778888888888888888887778888888888888887666431 111111
Q ss_pred -------cCCCCCcEEEccCCcCc---cccch---------hhhcccCceeEEEccCCcccccCCccccCCCCccEEEcc
Q 041473 308 -------GKCKNLILLDLSNNNLT---GTIPT---------EVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVS 368 (488)
Q Consensus 308 -------~~~~~L~~L~l~~~~~~---~~~~~---------~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 368 (488)
.....++.+.+++..+. ...|+ ....++-+.++...++..+. .+|..+. ..-+.+++.
T Consensus 376 ~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~ 452 (498)
T KOG4237|consen 376 VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLD 452 (498)
T ss_pred CCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcc
Confidence 11123556666554332 11111 11222233334556666555 4554443 457889999
Q ss_pred CCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 369 ENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 369 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
+|.++ .+|.. .+.+| .+++++|++.......|.++++|.+|-|+.|
T Consensus 453 gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 453 GNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 99999 77766 57788 9999999999777889999999999998875
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=5.9e-18 Score=168.61 Aligned_cols=183 Identities=30% Similarity=0.308 Sum_probs=99.9
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecC
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE 295 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 295 (488)
.|+.|++.+|.++. +|. .+++|++|++++|.+... +. ...+|+.|.+++|.+.. +|. ..++|++|+++
T Consensus 283 ~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LPT---LPSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CC---CcccccccccccCcccc-ccc---cccccceEecC
Confidence 45555555555542 222 234566666666665532 11 12346666666666552 232 12456666776
Q ss_pred CCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCC
Q 041473 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375 (488)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 375 (488)
+|.+. .+|.. .++|+.|++++|.+. .+|... ..+ +.|++++|.+.. +|.. .++|+.|++++|.++ .
T Consensus 351 ~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l~---~~L-~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-s 416 (788)
T PRK15387 351 DNQLA-SLPTL---PSELYKLWAYNNRLT-SLPALP---SGL-KELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-S 416 (788)
T ss_pred CCccC-CCCCC---Ccccceehhhccccc-cCcccc---ccc-ceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-C
Confidence 66666 33332 245666666666665 444322 122 566666666652 3322 245666777777666 4
Q ss_pred CccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhh
Q 041473 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYF 428 (488)
Q Consensus 376 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 428 (488)
+|.. +.+|+.|++++|+++ .+|..+.++++|+.|++++|++++..+..+
T Consensus 417 IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 417 LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 5532 235666667766666 455566666667777777776665555544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=1.5e-17 Score=165.84 Aligned_cols=201 Identities=28% Similarity=0.321 Sum_probs=152.6
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
++|++|++.+|.+.. +|. ...+|+.|++++|.+... +. .+++|+.|++++|.+.. ++.. ..+|+.|++
T Consensus 262 ~sL~~L~Ls~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~L 329 (788)
T PRK15387 262 PGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWA 329 (788)
T ss_pred cccceeeccCCchhh-hhh---chhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC---ccccccccc
Confidence 467777777776653 333 235788999999988743 22 24789999999998874 3432 356888999
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccC
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG 374 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 374 (488)
++|.+. .+|. + .++|+.|++++|+++ .+|.. +..++.|++++|.+. .+|.. .++|+.|++++|.++
T Consensus 330 s~N~L~-~LP~-l--p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt- 395 (788)
T PRK15387 330 YNNQLT-SLPT-L--PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT- 395 (788)
T ss_pred ccCccc-cccc-c--ccccceEecCCCccC-CCCCC----Ccccceehhhccccc-cCccc---ccccceEEecCCccc-
Confidence 999987 3453 2 257999999999998 56643 233378899999988 45543 357999999999998
Q ss_pred CCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccC
Q 041473 375 EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 375 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
.+|.. .++|+.|++++|++.. +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+
T Consensus 396 ~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 396 SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 56643 4689999999999984 4543 357889999999998 688899999999999999999997544
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=1.4e-19 Score=169.01 Aligned_cols=251 Identities=22% Similarity=0.231 Sum_probs=151.9
Q ss_pred cccEEEccccccccc----cchhccCCCCCCEEEccCCcCCC------CccccccCCCCccEEEcccccccCCCCccccC
Q 041473 216 RLKRFTVGNNQLFGN----IPSGLGNLVNLELLDLGDNQFTG------RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGN 285 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 285 (488)
.++++.+.++.++.. ++..+...+++++++++++.+.. ..+..+..+++|+.|++++|.+....+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 455666655554321 23334455556666666655441 11233445667777777776665433333333
Q ss_pred Cc---cccEEecCCCccCCC----CCccccCC-CCCcEEEccCCcCccc----cchhhhcccCceeEEEccCCccccc--
Q 041473 286 LT---LLFTLSFEGNRLEGS----IPSSLGKC-KNLILLDLSNNNLTGT----IPTEVIGLSSLSIYLDLSKNQLNGP-- 351 (488)
Q Consensus 286 ~~---~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~~L~l~~~~~~~~-- 351 (488)
+. +|++|++++|.+.+. ....+..+ ++|+.|++++|.+++. ++..+.....+ ++|++++|.+.+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL-KELNLANNGIGDAGI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc-CEEECcCCCCchHHH
Confidence 33 377777777766521 22234445 6777777777776632 22233333444 6777777776532
Q ss_pred --CCccccCCCCccEEEccCCcccCC----CccccccCCCCCEEecCCccccccCccccc-----CCCCCCEEeccCccc
Q 041473 352 --LPSNFGILKNLGVLDVSENKLSGE----IPNSLGSCVRLEQLVMNGNFFQGNIPSSFS-----SLRGIQNLDLSRNNL 420 (488)
Q Consensus 352 --~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~ 420 (488)
++..+...++|++|++++|.+.+. ++..+..+++|++|++++|.+.+.....+. ..+.|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 223344556889999998887633 234566778899999999988753332222 247899999999988
Q ss_pred CC----ccchhhhccccCceeeccCcccccc----cCC-cccc-CCcceeeecCCCC
Q 041473 421 SG----RIPKYFENFFFLQNLNLSSNHFEGE----VPI-KGVF-SNSSAISLDGNDN 467 (488)
Q Consensus 421 ~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~-~~~~-~~L~~l~l~~n~~ 467 (488)
+. .+...+..+++|+++++++|++... ... .... ..++.++|.+|||
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 73 2445666778899999999998843 222 2223 6888999988875
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=4.7e-17 Score=163.24 Aligned_cols=253 Identities=25% Similarity=0.384 Sum_probs=185.0
Q ss_pred CCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEE
Q 041473 190 SRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLR 269 (488)
Q Consensus 190 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 269 (488)
.....+.++...+. .+|..+ ++.++.|++++|.++. +|..+. .+|++|++++|.+... +..+. ++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTSI-PATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccccC-Chhhh--ccccEEE
Confidence 45667777776655 334333 3579999999998884 454443 5899999999988743 33332 5799999
Q ss_pred cccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCccc
Q 041473 270 LKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLN 349 (488)
Q Consensus 270 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~ 349 (488)
+++|.+. .+|..+ .++|+.|++++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ..+++|++++|.+.
T Consensus 248 Ls~N~L~-~LP~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 248 LSINRIT-ELPERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLT 317 (754)
T ss_pred CcCCccC-cCChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccc
Confidence 9999887 455444 358999999999888 5666554 58999999999988 5665432 23378899999988
Q ss_pred ccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhh
Q 041473 350 GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFE 429 (488)
Q Consensus 350 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 429 (488)
. +|..+ .++|+.|++++|.++ .+|..+ +++|+.|++++|.+. ..|..+. ++|+.|+|++|+++ .+|..+.
T Consensus 318 ~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~ 387 (754)
T PRK15370 318 A-LPETL--PPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP 387 (754)
T ss_pred c-CCccc--cccceeccccCCccc-cCChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH
Confidence 3 45433 368999999999998 577655 479999999999988 4555443 68999999999998 4565554
Q ss_pred ccccCceeeccCcccccccCC-c----cccCCcceeeecCCCCcccccccc
Q 041473 430 NFFFLQNLNLSSNHFEGEVPI-K----GVFSNSSAISLDGNDNLCGGISEL 475 (488)
Q Consensus 430 ~l~~L~~L~l~~n~~~~~~~~-~----~~~~~L~~l~l~~n~~~c~~~~~l 475 (488)
.+|+.|++++|.+. .+|. . ...+.+..+++.+||+....++.|
T Consensus 388 --~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 388 --AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred --HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccHHHHHHH
Confidence 37999999999987 4442 2 234778899999999887776655
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=4.7e-18 Score=158.65 Aligned_cols=210 Identities=26% Similarity=0.368 Sum_probs=131.0
Q ss_pred hccCCCCCCEEEccCCcCCCCccccccCCC---CccEEEcccccccCC----CCccccCC-ccccEEecCCCccCCC---
Q 041473 234 GLGNLVNLELLDLGDNQFTGRILGSIGDLQ---KLQRLRLKGNKFLGE----IPSSVGNL-TLLFTLSFEGNRLEGS--- 302 (488)
Q Consensus 234 ~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~---~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~--- 302 (488)
.+..+++|++|+++++.+....+..+..+. +|+.|++++|.+.+. ....+..+ ++|++|++++|.+++.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 344566666666666665433333333333 377777776665421 11223344 6777777777766532
Q ss_pred -CCccccCCCCCcEEEccCCcCccc----cchhhhcccCceeEEEccCCccccc----CCccccCCCCccEEEccCCccc
Q 041473 303 -IPSSLGKCKNLILLDLSNNNLTGT----IPTEVIGLSSLSIYLDLSKNQLNGP----LPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 303 -~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
.+..+..+++|++|++++|.+.+. ++..+...+.+ ++|++++|.+.+. .+..+..+++|++|++++|.++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L-~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL-EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCC-CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 223445566777777777776632 22223333344 6777777766532 2334566789999999999887
Q ss_pred CCCccccc-----cCCCCCEEecCCcccccc----CcccccCCCCCCEEeccCcccCCc----cchhhhcc-ccCceeec
Q 041473 374 GEIPNSLG-----SCVRLEQLVMNGNFFQGN----IPSSFSSLRGIQNLDLSRNNLSGR----IPKYFENF-FFLQNLNL 439 (488)
Q Consensus 374 ~~~~~~~~-----~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l-~~L~~L~l 439 (488)
+.....+. ..+.|++|++++|.+++. ....+..+++|+++++++|.++.. ....+... +.|+++++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence 53332222 247999999999988732 234556678999999999999955 44444555 68999999
Q ss_pred cCccc
Q 041473 440 SSNHF 444 (488)
Q Consensus 440 ~~n~~ 444 (488)
.+|++
T Consensus 315 ~~~~~ 319 (319)
T cd00116 315 KDDSF 319 (319)
T ss_pred CCCCC
Confidence 98874
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.1e-18 Score=135.87 Aligned_cols=176 Identities=28% Similarity=0.461 Sum_probs=129.0
Q ss_pred cccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEc
Q 041473 288 LLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDV 367 (488)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 367 (488)
..+.|.++.|.++ ..|..+..+.+|+.|++++|+++ .+|..+..++.+ +.+++.-|++. ..|..|+.+|.|++||+
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~kl-r~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKL-RILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhh-hheecchhhhh-cCccccCCCchhhhhhc
Confidence 3344444444444 44444445555555555555555 555555555555 55566556655 67788888888999999
Q ss_pred cCCccc-CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 368 SENKLS-GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 368 ~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
..|.+. ...|..|..+..|+.|++++|.+. ..|..++++++|+.|.+++|.+. .+|..++.+..|++|.+.||+++.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee
Confidence 888775 467888888999999999999887 78888899999999999999988 788889999999999999999987
Q ss_pred ccCCcccc---CCcceeeecCCCCcc
Q 041473 447 EVPIKGVF---SNSSAISLDGNDNLC 469 (488)
Q Consensus 447 ~~~~~~~~---~~L~~l~l~~n~~~c 469 (488)
..|+.+.+ .+-+...+..|||.-
T Consensus 188 lppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 188 LPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred cChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 77766554 444567788888863
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=6.2e-16 Score=155.25 Aligned_cols=240 Identities=20% Similarity=0.344 Sum_probs=182.0
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
.+.+.|++.+..++. +|..+ .++++.|++++|.+.... ..+. .+|+.|++++|.+. .+|..+ .++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~LtsLP-~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELKSLP-ENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCCcCC-hhhc--cCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence 357889998888774 45444 357999999999988543 3332 58999999999887 445443 358999999
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccC
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG 374 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 374 (488)
++|.+. .+|..+. .+|+.|++++|++. .+|..+. ..+ ++|++++|.+. .+|..+. ++|+.|++++|.++
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL-~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt- 317 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EEL-RYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT- 317 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCC-cEEECCCCccc-cCcccch--hhHHHHHhcCCccc-
Confidence 999988 5666654 58999999999998 6776553 244 89999999998 4554443 57999999999998
Q ss_pred CCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCcccc
Q 041473 375 EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVF 454 (488)
Q Consensus 375 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 454 (488)
.+|..+ .++|+.|++++|.++. .|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.++. +|.. ..
T Consensus 318 ~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~-l~ 387 (754)
T PRK15370 318 ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPEN-LP 387 (754)
T ss_pred cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHh-HH
Confidence 566544 4799999999999985 554443 79999999999998 5666553 689999999999984 4532 34
Q ss_pred CCcceeeecCCCCcc------------ccccccccCcchhhh
Q 041473 455 SNSSAISLDGNDNLC------------GGISELHLSTCSIKE 484 (488)
Q Consensus 455 ~~L~~l~l~~n~~~c------------~~~~~l~~~~c~~~~ 484 (488)
..|+.|++++|.... ..+..|++.++++.+
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 579999999998652 334567788887653
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=9.9e-17 Score=125.08 Aligned_cols=168 Identities=28% Similarity=0.404 Sum_probs=146.4
Q ss_pred ccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCC
Q 041473 307 LGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRL 386 (488)
Q Consensus 307 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 386 (488)
+..+.+++.|.+++|+++ .+|..+..+..+ +.+++++|++. ..|..++.+++|+.|++.-|.+. ..|..|..++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nl-evln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNL-EVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhh-hhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 345678899999999999 888888888888 89999999998 78889999999999999999998 999999999999
Q ss_pred CEEecCCccccc-cCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCC
Q 041473 387 EQLVMNGNFFQG-NIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGN 465 (488)
Q Consensus 387 ~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 465 (488)
+.|++..|.+.+ ..|+.|..+..|+-|++++|.+. .+|..++.+++|+.|.+++|++.....+.+.++.|++|.|.||
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 999999998864 67889999999999999999998 8888999999999999999999955557889999999999999
Q ss_pred CCcc--ccccccccCc
Q 041473 466 DNLC--GGISELHLST 479 (488)
Q Consensus 466 ~~~c--~~~~~l~~~~ 479 (488)
-..- +.+.-||+-+
T Consensus 184 rl~vlppel~~l~l~~ 199 (264)
T KOG0617|consen 184 RLTVLPPELANLDLVG 199 (264)
T ss_pred eeeecChhhhhhhhhh
Confidence 6442 3344444433
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.26 E-value=9.4e-13 Score=114.91 Aligned_cols=251 Identities=21% Similarity=0.294 Sum_probs=130.2
Q ss_pred hhhhhccCCCccEEecCCCcccccCchhhhhhh---ccccEEEcccccc---ccccch-------hccCCCCCCEEEccC
Q 041473 182 FVSSLVNASRLEMMEISINNFGGMLPESVGNLS---TRLKRFTVGNNQL---FGNIPS-------GLGNLVNLELLDLGD 248 (488)
Q Consensus 182 ~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~---~~~~~~-------~l~~l~~L~~L~L~~ 248 (488)
....+.....++.++++++.+......++.... +.|+..++++-.- ...+|. .+..++.|++|+|++
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 344555667777777777776655444433321 2444444443211 011121 223445555555555
Q ss_pred CcCCCCccc----cccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCc
Q 041473 249 NQFTGRILG----SIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLT 324 (488)
Q Consensus 249 ~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 324 (488)
|.+....+. .+.++..|++|.+.+|.+.......++. .|.++. ........+.|+.+...+|.+.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccc
Confidence 555432222 2223444555555555433211111100 000000 0001122355666666666554
Q ss_pred cc----cchhhhcccCceeEEEccCCcccc----cCCccccCCCCccEEEccCCcccCC----CccccccCCCCCEEecC
Q 041473 325 GT----IPTEVIGLSSLSIYLDLSKNQLNG----PLPSNFGILKNLGVLDVSENKLSGE----IPNSLGSCVRLEQLVMN 392 (488)
Q Consensus 325 ~~----~~~~~~~~~~l~~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~ 392 (488)
+. +...+...+.+ +.+.++.|.+.. .....+..+++|++|||++|.++.. +...++.+++|++|+++
T Consensus 171 n~ga~~~A~~~~~~~~l-eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTL-EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred cccHHHHHHHHHhcccc-ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 11 12222233333 556666665431 1224567788888888888877632 33556677788888888
Q ss_pred CccccccCccccc-----CCCCCCEEeccCcccCCc----cchhhhccccCceeeccCccc
Q 041473 393 GNFFQGNIPSSFS-----SLRGIQNLDLSRNNLSGR----IPKYFENFFFLQNLNLSSNHF 444 (488)
Q Consensus 393 ~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~ 444 (488)
+|.+...+..+|. ..|+|+.|.+.+|.++.. +..++...+.|..|+|++|++
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8887765544332 357888888888887744 334445567888888888887
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=3.9e-12 Score=108.78 Aligned_cols=226 Identities=26% Similarity=0.216 Sum_probs=138.4
Q ss_pred cchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCC-ccCCCCCccccC
Q 041473 231 IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGN-RLEGSIPSSLGK 309 (488)
Q Consensus 231 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~ 309 (488)
.|..+..+.+|+.+.++.+.-..+.. .-..-|.|+++.+.+..+... +..+ -...+....-+.- -..|........
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~~-~~l~-pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQDV-PSLL-PETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccchhheec-eeecCchhheeeeeccccccc-cccc-chhhhcCccCCCCCccCCceEEecch
Confidence 34445556677777777765432211 111226677777665543311 1100 0011111000000 011112222333
Q ss_pred CCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEE
Q 041473 310 CKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 389 (488)
Q Consensus 310 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 389 (488)
...|+++++++|.++ .+.+++--.+.. +.|++++|.+..+ +.++.+++|+.||+++|.++ .+..+-..+-+.+.|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pki-r~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKL-RRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccce-eEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 456889999999887 777777666666 8899999988733 23778899999999999888 555555567889999
Q ss_pred ecCCccccccCcccccCCCCCCEEeccCcccCCccc-hhhhccccCceeeccCcccccccCC----c-cccCCcceeeec
Q 041473 390 VMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIP-KYFENFFFLQNLNLSSNHFEGEVPI----K-GVFSNSSAISLD 463 (488)
Q Consensus 390 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~----~-~~~~~L~~l~l~ 463 (488)
.+++|.+.+ ...+..+=+|..||+++|++..... +.++++|.|+.+.+.+|++.....- . .+-.+-.++.+.
T Consensus 358 ~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaSE~~LD 435 (490)
T KOG1259|consen 358 KLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGERASEISLD 435 (490)
T ss_pred ehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHHhhhhhheecC
Confidence 999998762 2345666788999999998875533 6778899999999999998754331 1 112344456665
Q ss_pred CCC
Q 041473 464 GND 466 (488)
Q Consensus 464 ~n~ 466 (488)
+-+
T Consensus 436 ~~~ 438 (490)
T KOG1259|consen 436 NEP 438 (490)
T ss_pred CCC
Confidence 543
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.6e-12 Score=115.37 Aligned_cols=215 Identities=20% Similarity=0.182 Sum_probs=109.3
Q ss_pred cCCccCcEEeccCCCCCCCcC-ccccCCccccccccccccccc--ccchhhcCCCCccEEEeeccccccccchh-hhccC
Q 041473 13 GSLSKLRTLAVHFNNLSGEIP-SSFGNLSSLEFLSAAVNQFVG--QIPETLSELKRMRSIGFGANKLSGEIPFS-IYNLS 88 (488)
Q Consensus 13 ~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-~~~l~ 88 (488)
+++++||...+.++.+..... .....|++++.|++++|-+.. ........+++|+.|+++.|.+..-.... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345666666666665552211 355566666666666665532 22233456666666666666654111111 11345
Q ss_pred CCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCC--CCcccccccceee
Q 041473 89 SLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKV--PSLENLYKLQRVS 166 (488)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~ 166 (488)
+|+.|.++.|.++..-...+...+|+|+.|.+..|............++.|++|++++|.+.... +..+.++.|+.+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 66666666666553222333345666666666665322122223334556666666666554433 2355555555555
Q ss_pred ccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccc-cchhccCCCCCCEEE
Q 041473 167 FSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGN-IPSGLGNLVNLELLD 245 (488)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~ 245 (488)
++.+.+.....-+...... ...+++|++|++..|.+.+. ....+..+++|+.|.
T Consensus 278 ls~tgi~si~~~d~~s~~k-------------------------t~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDK-------------------------THTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred ccccCcchhcCCCccchhh-------------------------hcccccceeeecccCccccccccchhhccchhhhhh
Confidence 5555544332222222222 22335777777777766321 122345566777777
Q ss_pred ccCCcCC
Q 041473 246 LGDNQFT 252 (488)
Q Consensus 246 L~~~~~~ 252 (488)
+..+.+.
T Consensus 333 ~~~n~ln 339 (505)
T KOG3207|consen 333 ITLNYLN 339 (505)
T ss_pred ccccccc
Confidence 7776665
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=1.9e-11 Score=100.15 Aligned_cols=103 Identities=28% Similarity=0.329 Sum_probs=31.8
Q ss_pred eEEEccCCcccccCCcccc-CCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccC
Q 041473 339 IYLDLSKNQLNGPLPSNFG-ILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSR 417 (488)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 417 (488)
++|++.++.+.. +. .++ .+.+|++|++++|.++ .+. .+..+++|++|++++|++++..+.....+++|+.|++++
T Consensus 22 ~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 22 RELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 566777776652 22 233 3566677777777666 332 455566777777777776643322223566677777777
Q ss_pred cccCCc-cchhhhccccCceeeccCcccc
Q 041473 418 NNLSGR-IPKYFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 418 n~~~~~-~~~~l~~l~~L~~L~l~~n~~~ 445 (488)
|++... .-..+..+++|+.|++.|||+.
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 766543 2245566666777777777665
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.6e-12 Score=116.75 Aligned_cols=209 Identities=22% Similarity=0.238 Sum_probs=122.5
Q ss_pred cCCCCCCEEEccCCcCCCCcc-ccccCCCCccEEEcccccccCCCC--ccccCCccccEEecCCCccCCCCCcc-ccCCC
Q 041473 236 GNLVNLELLDLGDNQFTGRIL-GSIGDLQKLQRLRLKGNKFLGEIP--SSVGNLTLLFTLSFEGNRLEGSIPSS-LGKCK 311 (488)
Q Consensus 236 ~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 311 (488)
.++.+|+++.+.++....... .....+++++.|+++.|-+....+ .....+|+|+.|+++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456778888888776653222 345667888888888886653222 23457788888888888765221111 11346
Q ss_pred CCcEEEccCCcCccc-cchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCc--cccccCCCCCE
Q 041473 312 NLILLDLSNNNLTGT-IPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIP--NSLGSCVRLEQ 388 (488)
Q Consensus 312 ~L~~L~l~~~~~~~~-~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~ 388 (488)
.|+.|.+++|.++.. +......++++ ..|.+..|.....-.....-+..|+.|+|++|.+. ..+ .....++.|+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl-~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSL-EVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcH-HHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence 677788888766522 22233344555 56677766422122233344556777777777665 333 23445677777
Q ss_pred EecCCccccccC-ccc-----ccCCCCCCEEeccCcccCCc-cchhhhccccCceeeccCccccc
Q 041473 389 LVMNGNFFQGNI-PSS-----FSSLRGIQNLDLSRNNLSGR-IPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 389 L~l~~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
|+++.|++.++- +.+ ...+++|++|++..|++.+- --..+..+++|+.+.+.+|++..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 777777766421 222 23457777777777776422 22445566677777777777664
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.18 E-value=4e-11 Score=122.98 Aligned_cols=131 Identities=24% Similarity=0.310 Sum_probs=102.1
Q ss_pred CCccCcEEeccCCCCCCCcCccccCCcccccccccccc--cccccchhhcCCCCccEEEeeccccccccchhhhccCCCc
Q 041473 14 SLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQ--FVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLS 91 (488)
Q Consensus 14 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 91 (488)
.....|++.+.++.+. ..+.+. .++.|++|-+.++. +.....+.|..++.|++||+++|.--..+|..++++.+||
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3467788888888776 444443 45579998888886 5545555688899999999998766568999999999999
Q ss_pred EEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCC
Q 041473 92 LLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNG 148 (488)
Q Consensus 92 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 148 (488)
+|+++++.+. .+|..+. .+..|.+|++..+......+.....+.+|++|.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999998 9999888 78899999998776554556666668888888886554
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=4.7e-12 Score=110.65 Aligned_cols=185 Identities=19% Similarity=0.230 Sum_probs=104.0
Q ss_pred cccEEEccccccccccch----hccCCCCCCEEEccCCcCCCCcccc-------------ccCCCCccEEEcccccccCC
Q 041473 216 RLKRFTVGNNQLFGNIPS----GLGNLVNLELLDLGDNQFTGRILGS-------------IGDLQKLQRLRLKGNKFLGE 278 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~L~~~~~~~~~~~~-------------l~~l~~L~~L~l~~~~~~~~ 278 (488)
+|+++++++|.+....+. .+..+..|++|.+.+|.+....... ...-+.|+.+...+|++.+.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 666666666655433222 3456889999999999876432222 23345677777777765432
Q ss_pred CC----ccccCCccccEEecCCCccCCC----CCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccc
Q 041473 279 IP----SSVGNLTLLFTLSFEGNRLEGS----IPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG 350 (488)
Q Consensus 279 ~~----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~ 350 (488)
.. ..|...+.|+.+.+..|.+... ...++..|++|+.|++.+|.++..-..
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~--------------------- 231 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV--------------------- 231 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH---------------------
Confidence 21 2344556677777766665422 123455566666666666655421111
Q ss_pred cCCccccCCCCccEEEccCCcccCCCccccc-----cCCCCCEEecCCccccccCc----ccccCCCCCCEEeccCcccC
Q 041473 351 PLPSNFGILKNLGVLDVSENKLSGEIPNSLG-----SCVRLEQLVMNGNFFQGNIP----SSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 351 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~ 421 (488)
.+...++.++.|+.|++++|.+......+|. ..++|+.+.+.+|.++.... .++...+.|..|+|++|++.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 1122334445666666666666544433221 35677777777776664222 23334577777777777773
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=7.3e-11 Score=96.71 Aligned_cols=128 Identities=27% Similarity=0.273 Sum_probs=51.7
Q ss_pred CCCCCcEEEccCCcCccccchhhh-cccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCcccc-ccCCCC
Q 041473 309 KCKNLILLDLSNNNLTGTIPTEVI-GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSL-GSCVRL 386 (488)
Q Consensus 309 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L 386 (488)
++.++++|++.+|.+. .+. .+. .+..+ +.|++++|.+... +.+..++.|++|++++|.++ .+...+ ..+++|
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L-~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKL-EVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT---EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccc-ccc-chhhhhcCC-CEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 3445677777777766 332 232 23344 6778888877632 24667889999999999998 444444 468999
Q ss_pred CEEecCCccccccCc-ccccCCCCCCEEeccCcccCCcc---chhhhccccCceeeccCc
Q 041473 387 EQLVMNGNFFQGNIP-SSFSSLRGIQNLDLSRNNLSGRI---PKYFENFFFLQNLNLSSN 442 (488)
Q Consensus 387 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~l~~n 442 (488)
++|++++|++.+... ..+..+++|+.|++.+|++.... ...+..+|+|+.||-..-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 999999999975433 56678899999999999998552 245678899999875433
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=2e-11 Score=104.50 Aligned_cols=131 Identities=26% Similarity=0.340 Sum_probs=100.4
Q ss_pred hhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCC
Q 041473 331 VIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGI 410 (488)
Q Consensus 331 ~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 410 (488)
+.-+..+ +.+++++|.++ .+-++..-.|.++.|+++.|.+. .+. .++.+++|+.|++++|.++ ...++=..+-+.
T Consensus 280 ~dTWq~L-telDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 280 ADTWQEL-TELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred cchHhhh-hhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 3334444 68899999887 44556666788999999999887 333 3667889999999999887 344555567788
Q ss_pred CEEeccCcccCCccchhhhccccCceeeccCccccc--ccCCccccCCcceeeecCCCCc
Q 041473 411 QNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG--EVPIKGVFSNSSAISLDGNDNL 468 (488)
Q Consensus 411 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~~~ 468 (488)
++|.+++|.+... ..++.+-+|..||+++|++.. .....+.++.|+.+.+.+||..
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 8999999887632 467788899999999999875 3667888999999999999864
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=3.6e-12 Score=118.21 Aligned_cols=170 Identities=31% Similarity=0.497 Sum_probs=94.8
Q ss_pred cEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccC
Q 041473 266 QRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSK 345 (488)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~ 345 (488)
...+++.|++. ..|..+..|-.|+.+.++.|.+. .+|.++..+..|++++++.|++. .+|..+..++ + +.+.+++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-L-kvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-L-KVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-c-eeEEEec
Confidence 44455555554 44444445555555555555554 45555555555666666666555 5555444433 2 4555566
Q ss_pred CcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccc
Q 041473 346 NQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIP 425 (488)
Q Consensus 346 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 425 (488)
|+++ .+|..++..+.|..||.+.|.+- .+|..+..+.+|+.|.++.|++. ..|+.+. .-.|..||++.|+++ .+|
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLP 227 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecc
Confidence 6655 44445555556666666666665 55555556666666666666655 2333333 334666666666666 555
Q ss_pred hhhhccccCceeeccCcccc
Q 041473 426 KYFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 426 ~~l~~l~~L~~L~l~~n~~~ 445 (488)
-.|..+..|++|-|.+|+++
T Consensus 228 v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhhheeeeeccCCCC
Confidence 56666666666666666665
No 33
>PLN03150 hypothetical protein; Provisional
Probab=99.07 E-value=3e-10 Score=114.15 Aligned_cols=118 Identities=32% Similarity=0.574 Sum_probs=102.8
Q ss_pred CccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeecc
Q 041473 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLS 440 (488)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 440 (488)
.++.|+|++|.+.+.+|..+..+++|+.|++++|.+....|..+..+++|+.|++++|++++.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999998999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred CcccccccCCcc--ccCCcceeeecCCCCccccccccccCcch
Q 041473 441 SNHFEGEVPIKG--VFSNSSAISLDGNDNLCGGISELHLSTCS 481 (488)
Q Consensus 441 ~n~~~~~~~~~~--~~~~L~~l~l~~n~~~c~~~~~l~~~~c~ 481 (488)
+|.+++.+|..- .+.++..+++.+|+..|+ .+. +..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~-~p~--l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG-IPG--LRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC-CCC--CCCCc
Confidence 999999888532 235667899999999997 343 35564
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=1.7e-10 Score=110.81 Aligned_cols=199 Identities=34% Similarity=0.501 Sum_probs=141.9
Q ss_pred EEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCc-cccEEecCCCccCCCCCccccCCCCCcEEEccCC
Q 041473 243 LLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLT-LLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNN 321 (488)
Q Consensus 243 ~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 321 (488)
.+....+.+.. .......++.++.+.+.++.+.+ ++....... +|+.|++++|.+. ..+..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 56666666532 22233445778888888888874 344455553 8889999888887 45456777888999999999
Q ss_pred cCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCc
Q 041473 322 NLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP 401 (488)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 401 (488)
++. .++......+.+ +.+++++|.+. .+|........|+++.+++|.+. ..+..+.++.++..+.+.+|++.. .+
T Consensus 174 ~l~-~l~~~~~~~~~L-~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNL-NNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LP 248 (394)
T ss_pred hhh-hhhhhhhhhhhh-hheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-cc
Confidence 888 666555445555 77888888887 55554445566888888888654 556667778888888888887763 35
Q ss_pred ccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCc
Q 041473 402 SSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK 451 (488)
Q Consensus 402 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 451 (488)
..+..++.+++|++++|.++.... +....+++.|+++++.++...+..
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 667777888888888888885544 777788888888888887655543
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=1.8e-10 Score=110.69 Aligned_cols=202 Identities=38% Similarity=0.467 Sum_probs=154.7
Q ss_pred EEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCC-CccEEEcccccccCCCCccccCCccccEEecCCC
Q 041473 219 RFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQ-KLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGN 297 (488)
Q Consensus 219 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (488)
.+....+.+... ...+...+.++.|++.++.+....+ ...... +|+.|++++|.+. ..+..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 466666655322 2234556789999999998885443 334443 8999999999887 44456788999999999999
Q ss_pred ccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCc
Q 041473 298 RLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIP 377 (488)
Q Consensus 298 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 377 (488)
++. ..+......++|+.|++++|++. .+|........+ +++.+++|.+. ..+..+..+.++..+.+.+|++. ..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L-~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL-EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhh-hhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 998 55555546789999999999998 777654333334 78899999654 45566778889999999999987 546
Q ss_pred cccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhc
Q 041473 378 NSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFEN 430 (488)
Q Consensus 378 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 430 (488)
..+..+++++.|++++|.+..... +....+++.|+++++.++..++.....
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~~ 299 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALL 299 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhcc
Confidence 778889999999999999985544 888899999999999999777655543
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=9.2e-11 Score=120.34 Aligned_cols=131 Identities=25% Similarity=0.342 Sum_probs=101.0
Q ss_pred CCccCcEEeccCCC--CCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCc
Q 041473 14 SLSKLRTLAVHFNN--LSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLS 91 (488)
Q Consensus 14 ~~~~L~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 91 (488)
.++.|++|-+.++. +.......|..++.|+.||+++|.-...+|..++.+-+||+|+++++.+. .+|..+.++..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 45679999888885 55455566899999999999998766689999999999999999999999 8999999999999
Q ss_pred EEecccCCcCCCCCcchhccCCCCcEEEcCCCccc--ccCCccccCCCCCceeeccc
Q 041473 92 LLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFT--GPIPASISNASNLMRLTIQK 146 (488)
Q Consensus 92 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~ 146 (488)
+|++..+.....+ ..+...+.+||+|.+...... ......+.++.+|+.+++..
T Consensus 622 ~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 622 YLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred eeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 9999988765344 455546999999999765422 12223345566666666543
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=3e-10 Score=76.46 Aligned_cols=61 Identities=39% Similarity=0.530 Sum_probs=39.3
Q ss_pred CCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccc
Q 041473 384 VRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHF 444 (488)
Q Consensus 384 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 444 (488)
|+|++|++++|++....+++|.++++|++|++++|.+....+.+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666655556666666666666666666655556666666666666666653
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.00 E-value=2e-11 Score=116.51 Aligned_cols=199 Identities=25% Similarity=0.251 Sum_probs=136.7
Q ss_pred CCCccEEEcccccccCCC-CccccCCccccEEecCCCccCCCCCccccCC-CCCcEEEccCCcCccccchhh--------
Q 041473 262 LQKLQRLRLKGNKFLGEI-PSSVGNLTLLFTLSFEGNRLEGSIPSSLGKC-KNLILLDLSNNNLTGTIPTEV-------- 331 (488)
Q Consensus 262 l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~-------- 331 (488)
+++++.+.+-...-.+.. |..+..+.+|++|.+.+|++.. ...+..+ ..|+.|... +.+. .+...+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~-Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLD-ALRHVFASCGGDIS 158 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHH-HHHHHHHHhccccc
Confidence 344555555443333222 5556778899999999988863 1112111 234444322 2111 111111
Q ss_pred --hcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCC
Q 041473 332 --IGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRG 409 (488)
Q Consensus 332 --~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 409 (488)
..+..+ ...+.++|.+. ..-.++.-++.++.|+|++|+++ ... .+..++.|+.|||+.|++.....-...+|.
T Consensus 159 ns~~Wn~L-~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~- 233 (1096)
T KOG1859|consen 159 NSPVWNKL-ATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK- 233 (1096)
T ss_pred cchhhhhH-hhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhccccccchhhhh-
Confidence 112233 56778888887 45567777899999999999998 333 788999999999999999843322334444
Q ss_pred CCEEeccCcccCCccchhhhccccCceeeccCccccc--ccCCccccCCcceeeecCCCCcccc
Q 041473 410 IQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG--EVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 410 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
|+.|.+++|-++.. ..+.++.+|+.||++.|-+.+ .+..++.+..|+.|.+.|||..|..
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 99999999998843 467889999999999998875 3667899999999999999999986
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=3.5e-11 Score=111.78 Aligned_cols=159 Identities=30% Similarity=0.459 Sum_probs=94.0
Q ss_pred cCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhc
Q 041473 7 KVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYN 86 (488)
Q Consensus 7 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 86 (488)
++|+.+..|-.|..+.+..|.+. .+|....++..|.+++++.|++. ..|..+..++ |++|.+++|.++ .+|..++.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~ 164 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGL 164 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCccccc
Confidence 34555555666666666666665 55556666666666666666665 4455555555 666666666666 56666665
Q ss_pred cCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceee
Q 041473 87 LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVS 166 (488)
Q Consensus 87 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 166 (488)
..+|..|+.+.|++. .+|..+. .+.+|+.|.++.|++. .+|+.+.. -.|..||++.|++...+..+..+..|++|.
T Consensus 165 ~~tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred chhHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCceeecchhhhhhhhheeee
Confidence 666666666666666 5555555 4556666666655555 44544442 234456666666655555566666666666
Q ss_pred ccccccC
Q 041473 167 FSLNHLG 173 (488)
Q Consensus 167 l~~~~~~ 173 (488)
+..|.++
T Consensus 241 LenNPLq 247 (722)
T KOG0532|consen 241 LENNPLQ 247 (722)
T ss_pred eccCCCC
Confidence 6655554
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.95 E-value=2.1e-09 Score=108.14 Aligned_cols=113 Identities=33% Similarity=0.498 Sum_probs=103.2
Q ss_pred eeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccC
Q 041473 338 SIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSR 417 (488)
Q Consensus 338 ~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 417 (488)
++.|+++++.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++....|+.+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 37899999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cccCCccchhhhcc-ccCceeeccCcccccccCC
Q 041473 418 NNLSGRIPKYFENF-FFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 418 n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~ 450 (488)
|.+++.+|..+... .++..+++.+|+..|..|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 99999999888764 4778999999988776553
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=1.2e-09 Score=73.52 Aligned_cols=61 Identities=41% Similarity=0.551 Sum_probs=48.9
Q ss_pred CCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCccc
Q 041473 360 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL 420 (488)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 420 (488)
|+|++|++++|.++...+..|.++++|++|++++|.+....+.+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888855556778888888888888888877778888888888888888864
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.1e-10 Score=97.20 Aligned_cols=180 Identities=21% Similarity=0.215 Sum_probs=90.9
Q ss_pred CCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeecc
Q 041473 89 SLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFS 168 (488)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 168 (488)
.|+++||+...++-.--..+...+.+|+.|.+.+.+++..+...+.....|+.++++.+.-
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG------------------- 246 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG------------------- 246 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc-------------------
Confidence 3555555555443111112233455555555555555544444455555555555554321
Q ss_pred ccccCCCCCCchhhhhhhccCCCccEEecCCCcc-cccCchhhhhhhccccEEEcccccccc---ccchhccCCCCCCEE
Q 041473 169 LNHLGNGEKDDLEFVSSLVNASRLEMMEISINNF-GGMLPESVGNLSTRLKRFTVGNNQLFG---NIPSGLGNLVNLELL 244 (488)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L 244 (488)
+ ...+.-.-+.+++.|..++++++.. .+.....+.+..++++.|+++++.-.- .+..-...+++|.+|
T Consensus 247 ---~-----t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 247 ---F-----TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred ---c-----chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 1 1112223344555566666665532 223334455556788888888875321 111122467788888
Q ss_pred EccCCcC-CCCccccccCCCCccEEEcccccccCCCCc---cccCCccccEEecCCC
Q 041473 245 DLGDNQF-TGRILGSIGDLQKLQRLRLKGNKFLGEIPS---SVGNLTLLFTLSFEGN 297 (488)
Q Consensus 245 ~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~ 297 (488)
|++++.. .......|.+++.|++|.++.|.. ..|. .+...|+|.+|++.++
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 8877643 223344555667777777777642 2222 2344455555555544
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=6.5e-09 Score=89.27 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=18.1
Q ss_pred cccEEEccccccccc-cchhccCCCCCCEEEccCCcCC
Q 041473 216 RLKRFTVGNNQLFGN-IPSGLGNLVNLELLDLGDNQFT 252 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~ 252 (488)
.+.-|+++.+++... ..+.+.+++.|..|.++.+.+.
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 333444444444321 1223555666666666666554
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=2.9e-08 Score=85.36 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=51.0
Q ss_pred hhhhhccccEEEccccccccc-cchhccCCCCCCEEEccCCcCCCC-ccccccCCCCccEEEcccccccCCCCc------
Q 041473 210 VGNLSTRLKRFTVGNNQLFGN-IPSGLGNLVNLELLDLGDNQFTGR-ILGSIGDLQKLQRLRLKGNKFLGEIPS------ 281 (488)
Q Consensus 210 ~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~------ 281 (488)
+.+.++++..+.+..|.+... .......++.+.-|++..+.+... ....+.++++|+-|+++++++.+....
T Consensus 194 l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~l 273 (418)
T KOG2982|consen 194 LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFL 273 (418)
T ss_pred HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEE
Confidence 344456777777777765432 233445566667777777777643 334567778888888888877653321
Q ss_pred cccCCccccEEe
Q 041473 282 SVGNLTLLFTLS 293 (488)
Q Consensus 282 ~~~~~~~L~~L~ 293 (488)
.++.+++++.|+
T Consensus 274 lIaRL~~v~vLN 285 (418)
T KOG2982|consen 274 LIARLTKVQVLN 285 (418)
T ss_pred EEeeccceEEec
Confidence 234556666554
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.3e-09 Score=91.95 Aligned_cols=182 Identities=19% Similarity=0.158 Sum_probs=112.1
Q ss_pred ccccEEEccccccccc-cchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCC--ccccCCccccE
Q 041473 215 TRLKRFTVGNNQLFGN-IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIP--SSVGNLTLLFT 291 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~ 291 (488)
++++.++++...++.. ....+..|.+|+.|.+.++.+.+.....++...+|+.++++++.-..... ..+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4688888888777642 33345677888888888888877677777777888888888874321211 23567888888
Q ss_pred EecCCCccCCCCCcc-cc-CCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccC
Q 041473 292 LSFEGNRLEGSIPSS-LG-KCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSE 369 (488)
Q Consensus 292 L~l~~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 369 (488)
|++++|......... +. --++|+.|+++|+.-. ++ ...+...-..+|+|.+||+++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn------l~----------------~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN------LQ----------------KSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh------hh----------------hhHHHHHHHhCCceeeecccc
Confidence 888888765332221 11 1256777777776311 00 001111224567777777777
Q ss_pred C-cccCCCccccccCCCCCEEecCCccccccCcc---cccCCCCCCEEeccCccc
Q 041473 370 N-KLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPS---SFSSLRGIQNLDLSRNNL 420 (488)
Q Consensus 370 n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~~ 420 (488)
| .++......|..++.|++|.+++|..- .|. .+...|+|.+|++.+|-=
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 6 444333445666777778877777542 332 344567888888887743
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.54 E-value=1.2e-08 Score=98.15 Aligned_cols=218 Identities=25% Similarity=0.244 Sum_probs=107.8
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
.+++.+++.++.+..... .+..+++|++|++++|.+... ..+..++.|+.|++.+|.+.+.. .+..++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDIS--GLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhheeccCcchhcc--CCccchhhhcccC
Confidence 466666666666653321 145566666666666666532 23444555666666666665321 2334666666666
Q ss_pred CCCccCCCCC-ccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCC--ccEEEccCCc
Q 041473 295 EGNRLEGSIP-SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKN--LGVLDVSENK 371 (488)
Q Consensus 295 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~--L~~L~l~~n~ 371 (488)
++|.+...-+ . ...+.+++.+.+.+|.+........ .... ..+++..|.+...-+ +..+.. |+.+++++|+
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~--~~~l-~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDL--LKKL-VLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchhcccchHH--HHHH-HHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence 6666653322 1 3445566666666665542211111 1111 122444554442111 111222 5666666666
Q ss_pred ccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCc---cch-hhhccccCceeeccCccccc
Q 041473 372 LSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR---IPK-YFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 372 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~-~l~~l~~L~~L~l~~n~~~~ 446 (488)
+. ..+..+..+..+..+++.+|++.. ...+...+.+..+....+.+... ... .....+.++.+.+.+|+...
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cc-cccccccccccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 65 333444555666666666665542 12234445555555555554421 111 13344556666666666554
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.52 E-value=1.9e-08 Score=96.79 Aligned_cols=129 Identities=25% Similarity=0.309 Sum_probs=72.9
Q ss_pred CCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcE
Q 041473 38 NLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEV 117 (488)
Q Consensus 38 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 117 (488)
.+..++.+.+..+.+.. ....+..+++|+.|++.+|.+. .+...+..+++|++|++++|.|+ .+...- .++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~--~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLEGLS--TLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-cccchh--hccchhh
Confidence 45556666666666542 2233566677777777777766 33333556677777777777766 333222 3555777
Q ss_pred EEcCCCcccccCCccccCCCCCceeecccCCCccCCCC-cccccccceeeccccccC
Q 041473 118 LNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLG 173 (488)
Q Consensus 118 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 173 (488)
|++.+|.+. ....+..+..|+.+++++|.+...... ...+.+++.+.+..+.+.
T Consensus 145 L~l~~N~i~--~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 145 LNLSGNLIS--DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred heeccCcch--hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 777777664 223344466666666666665544332 344555555555555443
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.50 E-value=2.9e-08 Score=84.20 Aligned_cols=197 Identities=23% Similarity=0.293 Sum_probs=101.5
Q ss_pred cCCCCcEEEcCCCcccccCCc----cccCCCCCceeecccCCCccCCCC-cccccccceeeccccccCCCCCCchhhhhh
Q 041473 111 TLPNLEVLNFGNNQFTGPIPA----SISNASNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDDLEFVSS 185 (488)
Q Consensus 111 ~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 185 (488)
.||+|+.+++++|.+....|. .+.....|+||.+++|........ +++ .|. +.+....
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~---------------~la~nKK 152 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALF---------------HLAYNKK 152 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHH---------------HHHHHhh
Confidence 466666677666665544443 234456677777776655432211 110 000 0012222
Q ss_pred hccCCCccEEecCCCcccccCc---hhhhhhhccccEEEccccccccc-----cchhccCCCCCCEEEccCCcCCCC---
Q 041473 186 LVNASRLEMMEISINNFGGMLP---ESVGNLSTRLKRFTVGNNQLFGN-----IPSGLGNLVNLELLDLGDNQFTGR--- 254 (488)
Q Consensus 186 l~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~L~~~~~~~~--- 254 (488)
..+-+.|++.....|++..-.. ......-..++.+.+..|.|... ....+.++++|+.|++++|.++..
T Consensus 153 aa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~ 232 (388)
T COG5238 153 AADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR 232 (388)
T ss_pred hccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence 2333445555554444321111 11111113566666666655422 222356678899999998877632
Q ss_pred -ccccccCCCCccEEEcccccccCCCCccc------cCCccccEEecCCCccCCCCCcc-----c--cCCCCCcEEEccC
Q 041473 255 -ILGSIGDLQKLQRLRLKGNKFLGEIPSSV------GNLTLLFTLSFEGNRLEGSIPSS-----L--GKCKNLILLDLSN 320 (488)
Q Consensus 255 -~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~-----~--~~~~~L~~L~l~~ 320 (488)
....+...+.|+.|++.+|.+.......+ ...|+|..|...+|.+.+..... + ..+|-|..+.+.+
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 23345556778899998887654332211 23577788777777554322111 1 1345666667777
Q ss_pred CcCc
Q 041473 321 NNLT 324 (488)
Q Consensus 321 ~~~~ 324 (488)
|.+.
T Consensus 313 Nr~~ 316 (388)
T COG5238 313 NRIK 316 (388)
T ss_pred Ccch
Confidence 7665
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.45 E-value=3.4e-09 Score=101.65 Aligned_cols=127 Identities=28% Similarity=0.271 Sum_probs=79.0
Q ss_pred CCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccc-cccCCCCCEEe
Q 041473 312 NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNS-LGSCVRLEQLV 390 (488)
Q Consensus 312 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~ 390 (488)
.|.+.+.+.|.+. .+...+.-++.+ +.|+++.|++.... .+..+++|++|||+.|.+. .+|.. ...|. |..|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~al-e~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPAL-ESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHh-hhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeee
Confidence 4556666666665 455555444555 67777777776332 5566777777777777776 44432 22333 77777
Q ss_pred cCCccccccCcccccCCCCCCEEeccCcccCCc-cchhhhccccCceeeccCccccc
Q 041473 391 MNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR-IPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 391 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
+++|.++. ...+.++.+|+.||+++|-+.+. ...-++.+..|+.|+|.||++-+
T Consensus 239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 77777662 23456677777777777765533 12335566777788888887643
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.41 E-value=3.2e-08 Score=83.96 Aligned_cols=193 Identities=22% Similarity=0.251 Sum_probs=100.5
Q ss_pred hccCCCCCCEEEccCCcCCCCcc----ccccCCCCccEEEcccccccCCCCccc-------------cCCccccEEecCC
Q 041473 234 GLGNLVNLELLDLGDNQFTGRIL----GSIGDLQKLQRLRLKGNKFLGEIPSSV-------------GNLTLLFTLSFEG 296 (488)
Q Consensus 234 ~l~~l~~L~~L~L~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~ 296 (488)
.+..||.|+.+++++|.+....+ ..++.-..|++|.+.+|.+.......+ ..-|.|+++.+.+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 45567778888888777654332 234445667777777776542222111 1224455555555
Q ss_pred CccCCCCC----ccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcc
Q 041473 297 NRLEGSIP----SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKL 372 (488)
Q Consensus 297 ~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 372 (488)
|++..... ..+..-.+|+++.+..|.|. |..+..+ ....+..+.+|+.||+++|.+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L-----------------~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTML-----------------AFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHH-----------------HHHHHHHhCcceeeeccccch
Confidence 44431110 01111134444444444333 2211100 001223456788888888877
Q ss_pred cCC----CccccccCCCCCEEecCCccccccCccc----cc--CCCCCCEEeccCcccCCcc------chhh-hccccCc
Q 041473 373 SGE----IPNSLGSCVRLEQLVMNGNFFQGNIPSS----FS--SLRGIQNLDLSRNNLSGRI------PKYF-ENFFFLQ 435 (488)
Q Consensus 373 ~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~--~l~~L~~L~l~~n~~~~~~------~~~l-~~l~~L~ 435 (488)
+.. ...++...+.|++|.+.+|-+...+... |. ..|+|+.|...+|...+.+ +... ..+|-|.
T Consensus 227 t~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~ 306 (388)
T COG5238 227 TLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLV 306 (388)
T ss_pred hhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHH
Confidence 632 2334455667888888888766544322 22 2477888888888654321 1111 4456777
Q ss_pred eeeccCccccc
Q 041473 436 NLNLSSNHFEG 446 (488)
Q Consensus 436 ~L~l~~n~~~~ 446 (488)
.+.+.||++..
T Consensus 307 ~le~ngNr~~E 317 (388)
T COG5238 307 DLERNGNRIKE 317 (388)
T ss_pred HHHHccCcchh
Confidence 77777777764
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.27 E-value=1.1e-06 Score=71.56 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=45.5
Q ss_pred eEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCc-ccccCCCCCCEEeccC
Q 041473 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP-SSFSSLRGIQNLDLSR 417 (488)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~ 417 (488)
..+++++|.+.. ...|..++.|.+|.+.+|.|++..|..-.-+++|+.|.+.+|++..... .-+..||+|++|.+-+
T Consensus 45 d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 345555555431 1234445555555555555554333333334455555555555443221 2233445555555555
Q ss_pred cccCCccc---hhhhccccCceeeccC
Q 041473 418 NNLSGRIP---KYFENFFFLQNLNLSS 441 (488)
Q Consensus 418 n~~~~~~~---~~l~~l~~L~~L~l~~ 441 (488)
|++...-- ..+..+|+|+.||..+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 55442211 2234445555555443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=1.1e-07 Score=72.18 Aligned_cols=80 Identities=19% Similarity=0.343 Sum_probs=36.5
Q ss_pred ccEEEccCCcccCCCccccc-cCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeecc
Q 041473 362 LGVLDVSENKLSGEIPNSLG-SCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLS 440 (488)
Q Consensus 362 L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 440 (488)
|+..+|++|.+. ..|..|. .++..+.+++++|.+. ..|+.+..++.|+.|+++.|++. ..|+.+..+.++..|+.-
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 444444444444 3332222 2334455555555554 23333455555555555555554 344444444555555554
Q ss_pred Cccc
Q 041473 441 SNHF 444 (488)
Q Consensus 441 ~n~~ 444 (488)
+|..
T Consensus 132 ~na~ 135 (177)
T KOG4579|consen 132 ENAR 135 (177)
T ss_pred CCcc
Confidence 4443
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.08 E-value=2e-07 Score=70.76 Aligned_cols=135 Identities=21% Similarity=0.185 Sum_probs=99.6
Q ss_pred CCCcEEEccCCcCccccchhhhcccCc--eeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCE
Q 041473 311 KNLILLDLSNNNLTGTIPTEVIGLSSL--SIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQ 388 (488)
Q Consensus 311 ~~L~~L~l~~~~~~~~~~~~~~~~~~l--~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 388 (488)
..+..++++.|++. .+++.+..+... ++.+++++|.+....+..-..++..+.+++++|.+. .+|..+..++.|+.
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 34677889999876 555554433322 257899999999554444455678999999999999 88888999999999
Q ss_pred EecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccC
Q 041473 389 LVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 389 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
|+++.|.+. ..|..+..+.++-.|+..+|..... |..+-.-...-..++.++++.+-.+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei-d~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEI-DVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccccC-cHHHhccccHHHHHhcCCcccccCc
Confidence 999999998 5666666699999999999988844 4334333444455666667776555
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.02 E-value=4e-07 Score=82.24 Aligned_cols=258 Identities=16% Similarity=0.102 Sum_probs=119.1
Q ss_pred cCCCccEEecCCCc-ccccCchhhhhhhccccEEEccccc-cccccch-hccCCCCCCEEEccCCcC-CCC-ccccccCC
Q 041473 188 NASRLEMMEISINN-FGGMLPESVGNLSTRLKRFTVGNNQ-LFGNIPS-GLGNLVNLELLDLGDNQF-TGR-ILGSIGDL 262 (488)
Q Consensus 188 ~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~l~~l~~L~~L~L~~~~~-~~~-~~~~l~~l 262 (488)
.+++++.+.+.++. +.+.....+...+++++.+++..|. ++...-. --..+++|++++++++.- .+. ......++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 34444444444432 2333334444555566666666543 2222212 123466666666666532 111 11223344
Q ss_pred CCccEEEcccccccCC--CCccccCCccccEEecCCCc-cCCCC-CccccCCCCCcEEEccCCcC-ccccchhhhcccCc
Q 041473 263 QKLQRLRLKGNKFLGE--IPSSVGNLTLLFTLSFEGNR-LEGSI-PSSLGKCKNLILLDLSNNNL-TGTIPTEVIGLSSL 337 (488)
Q Consensus 263 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~l 337 (488)
..++.+..++|.-.+. +...-..+..+.++++..|. ++... ...-..+..|+.++.++|.- .+..-..+..-...
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 4555555555431110 00011233444444444442 22111 11112345566666666532 21112222222223
Q ss_pred eeEEEccCCc-ccccCCccc-cCCCCccEEEccCCcccC--CCccccccCCCCCEEecCCcc-ccccCcccc----cCCC
Q 041473 338 SIYLDLSKNQ-LNGPLPSNF-GILKNLGVLDVSENKLSG--EIPNSLGSCVRLEQLVMNGNF-FQGNIPSSF----SSLR 408 (488)
Q Consensus 338 ~~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~----~~l~ 408 (488)
++.+.++.|+ ++......+ ...+.|+.+++.++.... .+...-.+++.|+++.+++|. +++.+-..+ .++.
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 3555555553 221111111 234567777777764331 123334467777777777774 443322222 3456
Q ss_pred CCCEEeccCcccC-CccchhhhccccCceeeccCcccc
Q 041473 409 GIQNLDLSRNNLS-GRIPKYFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 409 ~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~ 445 (488)
.|+.+.+++|+.+ +...+.+..+++|+.+++.+|.-.
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 7777788887654 234456677777888877777543
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=8.2e-06 Score=49.98 Aligned_cols=36 Identities=36% Similarity=0.581 Sum_probs=18.5
Q ss_pred CCCEEeccCcccCCccchhhhccccCceeeccCcccc
Q 041473 409 GIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 409 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 445 (488)
+|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33334555555555555555554
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.96 E-value=6.1e-07 Score=81.08 Aligned_cols=296 Identities=17% Similarity=0.117 Sum_probs=162.1
Q ss_pred CCceeecccCCCccCCCC---cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCC-cccccCchhhhhh
Q 041473 138 NLMRLTIQKNGFSGKVPS---LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISIN-NFGGMLPESVGNL 213 (488)
Q Consensus 138 ~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~-~~~~~~~~~~~~~ 213 (488)
.|+.+.++|+.-...-+. ...+++++.|.+.++.. ..+......-..+..++.+.+..+ .+.+.....+..-
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~----iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKK----ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhccee----ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 456666665543222111 44556666665555541 112233344445677777777773 4555555556666
Q ss_pred hccccEEEcccccc-ccc-cchhccCCCCCCEEEccCCcCCCC--ccccccCCCCccEEEcccccccCCCCc--cccCCc
Q 041473 214 STRLKRFTVGNNQL-FGN-IPSGLGNLVNLELLDLGDNQFTGR--ILGSIGDLQKLQRLRLKGNKFLGEIPS--SVGNLT 287 (488)
Q Consensus 214 ~~~L~~L~l~~~~~-~~~-~~~~l~~l~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~ 287 (488)
+++|++++++.|.- .+. ......++..++.+...||.-.+. ....-..++.+.++++..|........ .-..+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 67888888888742 221 112345566677777776532211 111112345566667666643211111 123567
Q ss_pred cccEEecCCCcc-CCCCCcc-ccCCCCCcEEEccCCcC-ccccchhhh-cccCceeEEEccCCccc--ccCCccccCCCC
Q 041473 288 LLFTLSFEGNRL-EGSIPSS-LGKCKNLILLDLSNNNL-TGTIPTEVI-GLSSLSIYLDLSKNQLN--GPLPSNFGILKN 361 (488)
Q Consensus 288 ~L~~L~l~~~~~-~~~~~~~-~~~~~~L~~L~l~~~~~-~~~~~~~~~-~~~~l~~~L~l~~~~~~--~~~~~~~~~l~~ 361 (488)
.|+.+..+++.- +.....+ -.++++|+.+.+.+|+. ++.--..+. .++.+ +.+++..+... +.+...-.+++.
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L-e~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL-ERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh-hhhcccccceehhhhHhhhccCCch
Confidence 788888777633 2222222 34578888888888863 211111222 23333 56666666432 112233345788
Q ss_pred ccEEEccCCcc-cCCC----ccccccCCCCCEEecCCccc-cccCcccccCCCCCCEEeccCccc-CCc-cchhhhcccc
Q 041473 362 LGVLDVSENKL-SGEI----PNSLGSCVRLEQLVMNGNFF-QGNIPSSFSSLRGIQNLDLSRNNL-SGR-IPKYFENFFF 433 (488)
Q Consensus 362 L~~L~l~~n~l-~~~~----~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~-~~~-~~~~l~~l~~ 433 (488)
|+++.+++|.. ++.. ...-.....|..+.+.++.. ++...+.+..++.|+.+++-+|+- +.. +...-..+|+
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence 99999998843 3331 22234567899999999864 445556777889999999999953 322 2222355666
Q ss_pred Cceee
Q 041473 434 LQNLN 438 (488)
Q Consensus 434 L~~L~ 438 (488)
++..-
T Consensus 454 i~v~a 458 (483)
T KOG4341|consen 454 IKVHA 458 (483)
T ss_pred ceehh
Confidence 65543
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=1e-05 Score=49.55 Aligned_cols=36 Identities=33% Similarity=0.577 Sum_probs=15.5
Q ss_pred CCCEEecCCccccccCcccccCCCCCCEEeccCcccC
Q 041473 385 RLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 385 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 421 (488)
+|++|++++|++++ .+..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444442 2223444445555555555444
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=3.7e-06 Score=84.73 Aligned_cols=156 Identities=20% Similarity=0.242 Sum_probs=79.1
Q ss_pred CCccEEEeeccccc-cccchhhh-ccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCce
Q 041473 64 KRMRSIGFGANKLS-GEIPFSIY-NLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMR 141 (488)
Q Consensus 64 ~~L~~L~l~~~~l~-~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 141 (488)
.+|++|++++.... ...+..++ -+|+|+.|.+.+-.+...--..++.++|+|+.||+++++++. ...++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--l~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN--LSGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC--cHHHhccccHHH
Confidence 55666666664332 22333333 356666666666544322122344456666666666666652 145556666666
Q ss_pred eecccCCCcc--CCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccE
Q 041473 142 LTIQKNGFSG--KVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKR 219 (488)
Q Consensus 142 L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 219 (488)
|.+.+-.+.. ....+..+++|+.|+++...............+.-..++.|+.++.+++.+.+.+.+.+...-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 6665554432 12235556666666666554443332222233344445666666666665555544443332234444
Q ss_pred EE
Q 041473 220 FT 221 (488)
Q Consensus 220 L~ 221 (488)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 43
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=0.0001 Score=68.54 Aligned_cols=138 Identities=17% Similarity=0.265 Sum_probs=79.7
Q ss_pred ccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCC-cCccccchhhhcccCc
Q 041473 259 IGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNN-NLTGTIPTEVIGLSSL 337 (488)
Q Consensus 259 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l 337 (488)
+..+.+++.|++++|.+. .+|. -.++|++|.+++|.-....|..+. ++|+.|++++| .+. .+|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s------- 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPES------- 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccccc-------
Confidence 344678889999988766 4442 245688888887654446665553 57888888888 343 44432
Q ss_pred eeEEEccCCcccccCCccccCCCCccEEEccCCc-cc-CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEec
Q 041473 338 SIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENK-LS-GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDL 415 (488)
Q Consensus 338 ~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 415 (488)
++.|++..+... .++ . -.++|+.|.+.++. .. ...+.. -+++|+.|++.+|... ..|..+. .+|+.|++
T Consensus 114 Le~L~L~~n~~~-~L~-~--LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 114 VRSLEIKGSATD-SIK-N--VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred cceEEeCCCCCc-ccc-c--CcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 256666554432 111 1 11456777775432 11 011211 2367888888877755 2333333 57888887
Q ss_pred cCcc
Q 041473 416 SRNN 419 (488)
Q Consensus 416 ~~n~ 419 (488)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 7653
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.84 E-value=2.8e-05 Score=61.60 Aligned_cols=124 Identities=20% Similarity=0.207 Sum_probs=59.7
Q ss_pred cccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccC
Q 041473 9 PGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLS 88 (488)
Q Consensus 9 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~ 88 (488)
+.+|..+.+|+.+.+.. .+..+...+|.++++|+.+.+.++ +..+...+|..++.++.+.+.+ .+.......|..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 45677777777777764 455455667777777777777764 5545556677777777777765 33324455566677
Q ss_pred CCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCC
Q 041473 89 SLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNL 139 (488)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 139 (488)
+++.+.+..+ +. .++...+.++ +++.+.+.. .+.......|.++++|
T Consensus 82 ~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 7777777654 44 5555555455 677776654 2332334445555444
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=0.00017 Score=67.17 Aligned_cols=135 Identities=13% Similarity=0.159 Sum_probs=61.3
Q ss_pred CCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCC-ccCCCCCccccCCCCCcE
Q 041473 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGN-RLEGSIPSSLGKCKNLIL 315 (488)
Q Consensus 237 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~ 315 (488)
.+.+++.|++++|.+... + .+ .++|+.|.+.+|.-....|..+ .++|++|++++| .+. .+| ++|+.
T Consensus 50 ~~~~l~~L~Is~c~L~sL-P-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIESL-P-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCccc-C-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccce
Confidence 345556666665544422 2 11 1346666666543332333322 346666666665 222 222 34555
Q ss_pred EEccCCcCccccchhhhcccCceeEEEccCCc-cc-ccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCC
Q 041473 316 LDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQ-LN-GPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNG 393 (488)
Q Consensus 316 L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~-~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 393 (488)
|++..+... . +..++..++.|.+.+++ .. ...+..+ .++|++|++++|... ..|..+ ..+|+.|+++.
T Consensus 117 L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKL--PESLQSITLHI 186 (426)
T ss_pred EEeCCCCCc-c----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCcccc--cccCcEEEecc
Confidence 655544322 1 11122222444443221 10 0111111 256777777777655 444443 35777777766
Q ss_pred c
Q 041473 394 N 394 (488)
Q Consensus 394 n 394 (488)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 5
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=3.6e-05 Score=62.98 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=93.7
Q ss_pred eEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
+.+++.+.++. .+...-.-......+|+++|.+. .+ ..|..++.|..|.+.+|+|+.+.+..-..++.|+.|.+.+|
T Consensus 22 ~e~~LR~lkip-~ienlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccc-chhhccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 45666666554 22111112346788999999886 33 35778899999999999999888888788899999999999
Q ss_pred ccCCcc-chhhhccccCceeeccCccccc----ccCCccccCCcceeeecC
Q 041473 419 NLSGRI-PKYFENFFFLQNLNLSSNHFEG----EVPIKGVFSNSSAISLDG 464 (488)
Q Consensus 419 ~~~~~~-~~~l~~l~~L~~L~l~~n~~~~----~~~~~~~~~~L~~l~l~~ 464 (488)
++.... .+-+..||+|++|.+-+|+.+. ++.....+++|+.||..+
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 988552 3557899999999999999885 355677788998888764
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.75 E-value=0.00011 Score=58.06 Aligned_cols=122 Identities=20% Similarity=0.308 Sum_probs=44.3
Q ss_pred cccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCC
Q 041473 282 SVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKN 361 (488)
Q Consensus 282 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~ 361 (488)
.|.++++|+.+.+.. .+......+|..+++|+.+.+.++ +. . .....|..++.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~------------------------i~~~~F~~~~~ 59 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-S------------------------IGDNAFSNCKS 59 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-C------------------------E-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-c------------------------cceeeeecccc
Confidence 455555666666553 333344445555555666655543 22 2 22233444444
Q ss_pred ccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccC
Q 041473 362 LGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFL 434 (488)
Q Consensus 362 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 434 (488)
++.+.+.+ .+.......|..+++|+.+++..+ +.......|.++ +|+.+.+.+ .+.......|.++++|
T Consensus 60 l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 60 LESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55555543 222122334445555555555443 333444455555 555555554 3333444555555544
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=2.1e-05 Score=79.42 Aligned_cols=132 Identities=20% Similarity=0.212 Sum_probs=88.3
Q ss_pred ccCcEEeccCCCC-CCCcCcc-ccCCccccccccccccccccc-chhhcCCCCccEEEeeccccccccchhhhccCCCcE
Q 041473 16 SKLRTLAVHFNNL-SGEIPSS-FGNLSSLEFLSAAVNQFVGQI-PETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSL 92 (488)
Q Consensus 16 ~~L~~L~l~~~~l-~~~~~~~-~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 92 (488)
.+||+|++++... ....+.. -..+|+|+.|.++|-.+.... -.....+++|+.||+++++++. + .++.++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 4688888887532 2122222 345788999999887764222 2345688999999999988883 3 67888899999
Q ss_pred EecccCCcCCCCC--cchhccCCCCcEEEcCCCcccccC--C----ccccCCCCCceeecccCCCcc
Q 041473 93 LDFPVNQLQGSLP--SDIGFTLPNLEVLNFGNNQFTGPI--P----ASISNASNLMRLTIQKNGFSG 151 (488)
Q Consensus 93 L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~--~----~~~~~l~~L~~L~l~~~~~~~ 151 (488)
|.+.+=++. ... ..++ ++++|+.||++........ . +.-..+|+|+.||.+++.+..
T Consensus 200 L~mrnLe~e-~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFE-SYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCC-chhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 888887665 222 2445 6889999999876543111 1 122347889999998877654
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=1.5e-05 Score=68.43 Aligned_cols=96 Identities=25% Similarity=0.258 Sum_probs=69.4
Q ss_pred eEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCc-ccccCCCCCCEEeccC
Q 041473 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP-SSFSSLRGIQNLDLSR 417 (488)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~ 417 (488)
++|++.+|.+.++ .....++.|++|.|+-|.|+.. ..+..|++|++|+|+.|.|.+.-. +.+.++|+|+.|.|..
T Consensus 22 kKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 22 KKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 5677777777632 2345678899999999998743 346789999999999998874322 3456889999999998
Q ss_pred cccCCccc-----hhhhccccCceee
Q 041473 418 NNLSGRIP-----KYFENFFFLQNLN 438 (488)
Q Consensus 418 n~~~~~~~-----~~l~~l~~L~~L~ 438 (488)
|+=.+..+ ..++.+|+|+.||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 87665533 3456677777774
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.23 E-value=0.00028 Score=60.49 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=41.0
Q ss_pred ccCCcccccccccccccccccchhhcCCCCccEEEeecc--ccccccchhhhccCCCcEEecccCCcCCCCCcch--hcc
Q 041473 36 FGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGAN--KLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDI--GFT 111 (488)
Q Consensus 36 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~ 111 (488)
...+..|+.+.+.+..++.. ..|..+++|++|.++.| .+...++.....+++|+++++++|++. . +..+ ...
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhh
Confidence 33444455555554444321 12445556666666666 444334444444566666666666554 1 1111 113
Q ss_pred CCCCcEEEcCCCcc
Q 041473 112 LPNLEVLNFGNNQF 125 (488)
Q Consensus 112 l~~L~~L~l~~~~~ 125 (488)
+.+|..|++..|..
T Consensus 115 l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 115 LENLKSLDLFNCSV 128 (260)
T ss_pred hcchhhhhcccCCc
Confidence 44555555555543
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.23 E-value=3e-05 Score=76.91 Aligned_cols=186 Identities=22% Similarity=0.121 Sum_probs=97.6
Q ss_pred hccccEEEccccccccc--cchhccCCCCCCEEEccCC-cCCCC----ccccccCCCCccEEEccccc-ccCCCCcccc-
Q 041473 214 STRLKRFTVGNNQLFGN--IPSGLGNLVNLELLDLGDN-QFTGR----ILGSIGDLQKLQRLRLKGNK-FLGEIPSSVG- 284 (488)
Q Consensus 214 ~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~L~~~-~~~~~----~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~- 284 (488)
.+.++.+.+.++..... .......++.|++|+++++ ..... .......+++|+.++++.+. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 46788888877743322 2344567788888888873 11111 11233445778888888876 4433222332
Q ss_pred CCccccEEecCCCc-cCCCC-CccccCCCCCcEEEccCCcCccc--cchhhhcccCceeEEEccCCcccccCCccccCCC
Q 041473 285 NLTLLFTLSFEGNR-LEGSI-PSSLGKCKNLILLDLSNNNLTGT--IPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360 (488)
Q Consensus 285 ~~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~ 360 (488)
.+++|++|.+..|. ++... ......+++|++|+++.|..... +......++.+ +.+.+.. ...++
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l-~~l~~~~----------~~~c~ 335 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNL-RELKLLS----------LNGCP 335 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcch-hhhhhhh----------cCCCc
Confidence 37788888877665 44322 22334577788888887754311 12222222222 2222111 11134
Q ss_pred CccEEEccCCccc---CCCccccccCCCCCEEecCCccccccC-cccccCCCCC
Q 041473 361 NLGVLDVSENKLS---GEIPNSLGSCVRLEQLVMNGNFFQGNI-PSSFSSLRGI 410 (488)
Q Consensus 361 ~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L 410 (488)
.++.+.+.++... ......+..+++++.+.+..+.+.+.. ...+.+|+.|
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 4555555443221 122234556777888877777754433 2445556655
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=2.8e-05 Score=66.81 Aligned_cols=99 Identities=21% Similarity=0.191 Sum_probs=76.3
Q ss_pred CCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCcc-chhhhccccCcee
Q 041473 359 LKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRI-PKYFENFFFLQNL 437 (488)
Q Consensus 359 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L 437 (488)
+.+.++|++=||.+.++ . ....++.|+.|.|+-|.|+. .+.|..|++|++|+|+.|.|.+.. ...+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH-H-HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45678888889988732 2 34478999999999999973 356788999999999999988553 2667889999999
Q ss_pred eccCcccccccCC------ccccCCcceee
Q 041473 438 NLSSNHFEGEVPI------KGVFSNSSAIS 461 (488)
Q Consensus 438 ~l~~n~~~~~~~~------~~~~~~L~~l~ 461 (488)
+|..|+=.+.-+. ++.+++|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999986654442 45678888775
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.00036 Score=59.80 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=74.9
Q ss_pred CCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCc--cccccCcccccCCCCCCEEeccCcccCCc-cchhh
Q 041473 352 LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN--FFQGNIPSSFSSLRGIQNLDLSRNNLSGR-IPKYF 428 (488)
Q Consensus 352 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l 428 (488)
+......+..|+.+.+.+..++ .. ..|..+++|++|.++.| ++...+......+|+|+++++++|++.-. -..-+
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 4445556677888888888776 22 24556889999999999 66656666667779999999999987721 11345
Q ss_pred hccccCceeeccCcccccc-cCC---ccccCCcceee
Q 041473 429 ENFFFLQNLNLSSNHFEGE-VPI---KGVFSNSSAIS 461 (488)
Q Consensus 429 ~~l~~L~~L~l~~n~~~~~-~~~---~~~~~~L~~l~ 461 (488)
..+++|..|++.+|..+.. -+. ...+++|+.++
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 6677888999999987752 121 23455666554
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.95 E-value=0.00012 Score=72.53 Aligned_cols=238 Identities=20% Similarity=0.113 Sum_probs=128.6
Q ss_pred cCCCccEEecCCCc-ccccCchhhhhhhccccEEEcccc-cccccc----chhccCCCCCCEEEccCCc-CCCCcccccc
Q 041473 188 NASRLEMMEISINN-FGGMLPESVGNLSTRLKRFTVGNN-QLFGNI----PSGLGNLVNLELLDLGDNQ-FTGRILGSIG 260 (488)
Q Consensus 188 ~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~l~~L~~L~L~~~~-~~~~~~~~l~ 260 (488)
..+.++.+.+..+. +.+.....+....+.|+++++.++ ...... ......+++|+.|+++.+. +.+.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46788888887663 332223344444578999998873 221111 1233456888999998887 5544444443
Q ss_pred C-CCCccEEEccccc-ccCCCC-ccccCCccccEEecCCCccCCC--CCccccCCCCCcEEEccCCcCccccchhhhccc
Q 041473 261 D-LQKLQRLRLKGNK-FLGEIP-SSVGNLTLLFTLSFEGNRLEGS--IPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLS 335 (488)
Q Consensus 261 ~-l~~L~~L~l~~~~-~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 335 (488)
. +++|+.|.+.+|. +++..- .....++.|++|++++|..... .......+++++.+.+....- +.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 3 7889999988776 343222 2335688899999998855311 222344577777766544431 00
Q ss_pred CceeEEEccCCcc---cccCCccccCCCCccEEEccCCcccCCC-ccccccCCCCCEEecCCccccccCcccccCCCCCC
Q 041473 336 SLSIYLDLSKNQL---NGPLPSNFGILKNLGVLDVSENKLSGEI-PNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQ 411 (488)
Q Consensus 336 ~l~~~L~l~~~~~---~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 411 (488)
.+ +.+.+..+.. .....-....+++++.+.+.++...... ...+.+|+.|+ ..+..+ .....+++
T Consensus 336 ~l-~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~---------~~~~~~l~ 404 (482)
T KOG1947|consen 336 SL-TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR---------LCRSDSLR 404 (482)
T ss_pred cH-HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH---------hccCCccc
Confidence 00 1111111110 0112223456788888888887744222 23344455542 222111 11222378
Q ss_pred EEeccCcccCCc-cchhhhc-cccCceeeccCccccc
Q 041473 412 NLDLSRNNLSGR-IPKYFEN-FFFLQNLNLSSNHFEG 446 (488)
Q Consensus 412 ~L~l~~n~~~~~-~~~~l~~-l~~L~~L~l~~n~~~~ 446 (488)
.|+++.|..... .-..... +..++.+++.+|+...
T Consensus 405 ~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 405 VLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred eEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 888888864422 2222222 6677888888886553
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.00091 Score=55.04 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=62.6
Q ss_pred CCccEEEccCCcccCCCccccccCCCCCEEecCCcccc-ccCcccccC-CCCCCEEeccCc-ccCCccchhhhccccCce
Q 041473 360 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQ-GNIPSSFSS-LRGIQNLDLSRN-NLSGRIPKYFENFFFLQN 436 (488)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~-l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~ 436 (488)
..++.++-+++.|..+.-+.+.++++++.|.+.+|.-. +-.-+-+++ .++|+.|+|++| +|++....++..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 45778888888887777777888888888888888543 222223333 478888888888 577777788888888888
Q ss_pred eeccCcccc
Q 041473 437 LNLSSNHFE 445 (488)
Q Consensus 437 L~l~~n~~~ 445 (488)
|.+.+=+..
T Consensus 181 L~l~~l~~v 189 (221)
T KOG3864|consen 181 LHLYDLPYV 189 (221)
T ss_pred HHhcCchhh
Confidence 888776654
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.0018 Score=53.32 Aligned_cols=106 Identities=17% Similarity=0.103 Sum_probs=72.8
Q ss_pred cCCCCCEEecCCccccccCcccccCCCCCCEEeccCccc-CCccchhhh-ccccCceeeccCcccccc--cCCccccCCc
Q 041473 382 SCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNL-SGRIPKYFE-NFFFLQNLNLSSNHFEGE--VPIKGVFSNS 457 (488)
Q Consensus 382 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~~~l~-~l~~L~~L~l~~n~~~~~--~~~~~~~~~L 457 (488)
.-..++.++-+++.|...+-+-+..+++++.|.+.+|.- ..-..+.++ -.++|+.|+|++|+-.++ +..+..+++|
T Consensus 99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 345678899999999988888899999999999999953 222222232 347999999999964433 5556778999
Q ss_pred ceeeecCCCCcccc---cc--ccccCcchhhhccc
Q 041473 458 SAISLDGNDNLCGG---IS--ELHLSTCSIKESKQ 487 (488)
Q Consensus 458 ~~l~l~~n~~~c~~---~~--~l~~~~c~~~~~~~ 487 (488)
+.|.+.+=|-.-.- .. +=-++.|++..+++
T Consensus 179 r~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~d~ 213 (221)
T KOG3864|consen 179 RRLHLYDLPYVANLELVQRQLEEALPKCDIVGPDV 213 (221)
T ss_pred HHHHhcCchhhhchHHHHHHHHHhCcccceechhh
Confidence 99988875522110 00 11267777766654
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.21 E-value=0.01 Score=29.99 Aligned_cols=12 Identities=58% Similarity=0.836 Sum_probs=6.1
Q ss_pred CCEEeccCcccC
Q 041473 410 IQNLDLSRNNLS 421 (488)
Q Consensus 410 L~~L~l~~n~~~ 421 (488)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 445555555544
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.39 E-value=0.00024 Score=68.69 Aligned_cols=189 Identities=28% Similarity=0.301 Sum_probs=107.9
Q ss_pred CCEEEccCCcCCCCc----cccccCCCCccEEEcccccccCCCCc----cccCC-ccccEEecCCCccCCC----CCccc
Q 041473 241 LELLDLGDNQFTGRI----LGSIGDLQKLQRLRLKGNKFLGEIPS----SVGNL-TLLFTLSFEGNRLEGS----IPSSL 307 (488)
Q Consensus 241 L~~L~L~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~----~~~~~ 307 (488)
+..+.+.+|.+.... ...+...+.|..|++++|.+.+.... .+... ..++.|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 566677777665332 23445566777777777766532211 11222 4455555555555432 22233
Q ss_pred cCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCC----ccccccC
Q 041473 308 GKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEI----PNSLGSC 383 (488)
Q Consensus 308 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~ 383 (488)
.....++.++++.|.+. +....... ...+..+....++++|.+++|.++... ...+...
T Consensus 169 ~~~~~l~~l~l~~n~l~---~~g~~~l~--------------~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~ 231 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLI---ELGLLVLS--------------QALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASG 231 (478)
T ss_pred hcccchhHHHHHhcccc---hhhhHHHh--------------hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhcc
Confidence 34555666666666543 00000000 011112334567888888888776221 2334445
Q ss_pred CC-CCEEecCCccccccCc----ccccCC-CCCCEEeccCcccCCc----cchhhhccccCceeeccCccccc
Q 041473 384 VR-LEQLVMNGNFFQGNIP----SSFSSL-RGIQNLDLSRNNLSGR----IPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 384 ~~-L~~L~l~~n~l~~~~~----~~~~~l-~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
++ +.++++..|.+.+.+. ..+..+ +.++.++++.|++.+. +.+.+..++.++++.+++|++..
T Consensus 232 ~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 232 ESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 55 7778888888875432 334444 6778999999988865 44566777889999999998774
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.34 E-value=0.027 Score=28.39 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=8.7
Q ss_pred ccEEEeeccccccccchhh
Q 041473 66 MRSIGFGANKLSGEIPFSI 84 (488)
Q Consensus 66 L~~L~l~~~~l~~~~~~~~ 84 (488)
|++|++++|.++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555554 344433
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.91 E-value=0.0042 Score=52.37 Aligned_cols=86 Identities=14% Similarity=0.175 Sum_probs=48.8
Q ss_pred ccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCC
Q 041473 36 FGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNL 115 (488)
Q Consensus 36 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 115 (488)
+..+...+.||++.+++... -..|+.++.|..|+++.+.+. ..|..+.....++.+++..|... ..|.... ..+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~-k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK-KEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc-ccCCc
Confidence 44455555666666655422 223555556666666666665 55666665556666666665555 5565555 46666
Q ss_pred cEEEcCCCcc
Q 041473 116 EVLNFGNNQF 125 (488)
Q Consensus 116 ~~L~l~~~~~ 125 (488)
+.++..++.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 6666655544
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.19 E-value=0.083 Score=24.64 Aligned_cols=8 Identities=38% Similarity=0.468 Sum_probs=3.0
Q ss_pred cEEecccC
Q 041473 91 SLLDFPVN 98 (488)
Q Consensus 91 ~~L~l~~~ 98 (488)
+.|++++|
T Consensus 4 ~~L~l~~n 11 (17)
T PF13504_consen 4 RTLDLSNN 11 (17)
T ss_dssp SEEEETSS
T ss_pred CEEECCCC
Confidence 33333333
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.45 E-value=0.07 Score=27.52 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=7.4
Q ss_pred CCCCEEeccCcccCCcc
Q 041473 408 RGIQNLDLSRNNLSGRI 424 (488)
Q Consensus 408 ~~L~~L~l~~n~~~~~~ 424 (488)
++|++|+|++|.++...
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 44555555555554333
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.35 E-value=0.25 Score=25.99 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=12.5
Q ss_pred CCCcEEecccCCcCCCCCcchh
Q 041473 88 SSLSLLDFPVNQLQGSLPSDIG 109 (488)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~ 109 (488)
++|++|++++|.+. .+|..++
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5555543
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.35 E-value=0.25 Score=25.99 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=12.5
Q ss_pred CCCcEEecccCCcCCCCCcchh
Q 041473 88 SSLSLLDFPVNQLQGSLPSDIG 109 (488)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~ 109 (488)
++|++|++++|.+. .+|..++
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5555543
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.28 E-value=0.32 Score=25.53 Aligned_cols=13 Identities=54% Similarity=0.808 Sum_probs=5.5
Q ss_pred CCCEEeccCcccC
Q 041473 409 GIQNLDLSRNNLS 421 (488)
Q Consensus 409 ~L~~L~l~~n~~~ 421 (488)
+|+.|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.28 E-value=0.32 Score=25.53 Aligned_cols=13 Identities=54% Similarity=0.808 Sum_probs=5.5
Q ss_pred CCCEEeccCcccC
Q 041473 409 GIQNLDLSRNNLS 421 (488)
Q Consensus 409 ~L~~L~l~~n~~~ 421 (488)
+|+.|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.20 E-value=0.017 Score=48.83 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=73.3
Q ss_pred chhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCC
Q 041473 57 PETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNA 136 (488)
Q Consensus 57 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 136 (488)
...+...+...+||++.|++. .....|..++.+..|+++.+.+. .+|.+.. +...++.++...|..+ ..|..+...
T Consensus 35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~-q~~e~~~~~~~~n~~~-~~p~s~~k~ 110 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAK-QQRETVNAASHKNNHS-QQPKSQKKE 110 (326)
T ss_pred hhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHH-HHHHHHHHHhhccchh-hCCcccccc
Confidence 344677788999999999887 56667778888999999999887 8888877 5778888888887777 678888899
Q ss_pred CCCceeecccCCC
Q 041473 137 SNLMRLTIQKNGF 149 (488)
Q Consensus 137 ~~L~~L~l~~~~~ 149 (488)
++++.++..++++
T Consensus 111 ~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 111 PHPKKNEQKKTEF 123 (326)
T ss_pred CCcchhhhccCcc
Confidence 9999999888875
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=82.97 E-value=0.019 Score=55.77 Aligned_cols=61 Identities=25% Similarity=0.323 Sum_probs=35.2
Q ss_pred ccEEEccccccccc----cchhccCC-CCCCEEEccCCcCCCCc----cccccCCCCccEEEcccccccC
Q 041473 217 LKRFTVGNNQLFGN----IPSGLGNL-VNLELLDLGDNQFTGRI----LGSIGDLQKLQRLRLKGNKFLG 277 (488)
Q Consensus 217 L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~L~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~ 277 (488)
+.++++..|.+.+. ....+..+ ..+++++++.|.+.+.. ...+..+++++++.+++|.+.+
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 44455555554432 22233444 56677788877776433 2344456678888888877654
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=75.15 E-value=1.4 Score=23.13 Aligned_cols=13 Identities=46% Similarity=0.999 Sum_probs=9.1
Q ss_pred cccccccccCcch
Q 041473 469 CGGISELHLSTCS 481 (488)
Q Consensus 469 c~~~~~l~~~~c~ 481 (488)
|+.+++|+|++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 5667777777775
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.42 E-value=1.8 Score=50.41 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=19.7
Q ss_pred ccCcccCCccchhhhccccCceeeccCcccccccCCcc
Q 041473 415 LSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKG 452 (488)
Q Consensus 415 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 452 (488)
|++|+|+...+..|..+++|++|+|++|++.|.|...+
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~W 39 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLAR 39 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCccccccccHH
Confidence 45555554444455555555555555555555555433
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.11 E-value=2.3 Score=22.81 Aligned_cols=13 Identities=46% Similarity=0.764 Sum_probs=6.8
Q ss_pred CCCEEeccCcccC
Q 041473 409 GIQNLDLSRNNLS 421 (488)
Q Consensus 409 ~L~~L~l~~n~~~ 421 (488)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.19 E-value=5.1 Score=21.12 Aligned_cols=12 Identities=33% Similarity=0.415 Sum_probs=5.0
Q ss_pred CCCEEecCCccc
Q 041473 385 RLEQLVMNGNFF 396 (488)
Q Consensus 385 ~L~~L~l~~n~l 396 (488)
+|+.|++++|.|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 344444444443
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.75 E-value=4.2 Score=21.39 Aligned_cols=13 Identities=31% Similarity=0.670 Sum_probs=6.0
Q ss_pred CCCEEeccCcccC
Q 041473 409 GIQNLDLSRNNLS 421 (488)
Q Consensus 409 ~L~~L~l~~n~~~ 421 (488)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444444444444
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.14 E-value=5.4 Score=38.91 Aligned_cols=11 Identities=45% Similarity=0.607 Sum_probs=4.7
Q ss_pred CCccEEEccCC
Q 041473 360 KNLGVLDVSEN 370 (488)
Q Consensus 360 ~~L~~L~l~~n 370 (488)
|+|..|+|++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 34444444444
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.91 E-value=5.7 Score=38.78 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=17.0
Q ss_pred CCCccEEEccCCcccC--CCccccccCCCCCEEecCCc
Q 041473 359 LKNLGVLDVSENKLSG--EIPNSLGSCVRLEQLVMNGN 394 (488)
Q Consensus 359 l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n 394 (488)
.+.+..+.+++|++.. .+.......|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3555566666665541 11111223455555555555
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=53.65 E-value=75 Score=30.86 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=19.1
Q ss_pred CCcEEecccCCcCCCCCcchh--ccCCCCcEEEcCCCcc
Q 041473 89 SLSLLDFPVNQLQGSLPSDIG--FTLPNLEVLNFGNNQF 125 (488)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~ 125 (488)
.+.+++++.+...+.+|..+. ..-..++.++.+...+
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgi 253 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGI 253 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhccccccccc
Confidence 456666666666655554332 1122455555555443
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=45.97 E-value=2.2e+02 Score=27.84 Aligned_cols=111 Identities=18% Similarity=0.042 Sum_probs=55.0
Q ss_pred CccEEEccCCcccCCCccc--cccCCCCCEEecCCccccc-cCccccc--------CCCCCCEEeccCcccCCccc---h
Q 041473 361 NLGVLDVSENKLSGEIPNS--LGSCVRLEQLVMNGNFFQG-NIPSSFS--------SLRGIQNLDLSRNNLSGRIP---K 426 (488)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~--~~~~~~L~~L~l~~n~l~~-~~~~~~~--------~l~~L~~L~l~~n~~~~~~~---~ 426 (488)
.+++|.++.|...++.... ...-++.+.+++.+..-.. ..+.... ..--+..+.++.|+...-.- .
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 4777777777665443322 2234566666665432210 0110000 11246677777777663322 2
Q ss_pred hhhccccCceeeccCcccccc----cC-CccccCCcceeeecCCCCcccc
Q 041473 427 YFENFFFLQNLNLSSNHFEGE----VP-IKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 427 ~l~~l~~L~~L~l~~n~~~~~----~~-~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
.+.+-+.+..++++||....- +| .....-+++.+.++-|...-++
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~g 484 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPG 484 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccccc
Confidence 223446677788888766521 11 2333455566666655544443
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.04 E-value=51 Score=39.56 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=15.9
Q ss_pred cCCccccccCcccccCCCCCCEEeccCcccC
Q 041473 391 MNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 391 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 421 (488)
|++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4455555444445555555555555555544
No 95
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=23.35 E-value=1e+02 Score=18.46 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=14.0
Q ss_pred cCceeeccCcccccccCCccccCCcceeeec
Q 041473 433 FLQNLNLSSNHFEGEVPIKGVFSNSSAISLD 463 (488)
Q Consensus 433 ~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~ 463 (488)
+++.|.+ |..+...+.....+.++++|.++
T Consensus 13 ~l~~L~~-g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 13 SLKSLIF-GSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCeEEEE-CCccCccCCCCccCCCceEEEee
Confidence 4555555 22222233344444555555543
Done!