Query 041473
Match_columns 488
No_of_seqs 216 out of 2970
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 12:28:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.1E-54 1.1E-58 446.5 35.4 471 2-483 188-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.5E-52 5E-57 434.0 35.2 373 13-397 175-551 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.7E-51 5.7E-56 417.2 35.0 459 1-471 42-563 (606)
4 3vq2_A TLR4, TOLL-like recepto 100.0 8.7E-50 3E-54 404.6 32.9 459 2-471 42-561 (606)
5 3t6q_A CD180 antigen; protein- 100.0 1.4E-48 4.8E-53 395.8 35.2 470 7-483 26-560 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 5.6E-48 1.9E-52 396.5 36.2 463 1-471 34-625 (680)
7 1ziw_A TOLL-like receptor 3; i 100.0 5.1E-47 1.8E-51 389.4 39.7 474 8-485 19-599 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-46 7.7E-51 379.6 33.9 455 8-483 26-558 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 9.6E-47 3.3E-51 394.5 31.9 451 16-471 24-563 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 1.5E-46 5.2E-51 378.4 32.0 445 16-471 28-534 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-45 8.9E-50 383.6 32.5 439 19-468 7-539 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 2.8E-44 9.4E-49 360.1 29.3 448 2-471 15-513 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 1.1E-43 3.8E-48 357.5 32.1 448 18-483 9-531 (570)
14 2z7x_B TOLL-like receptor 1, v 100.0 8.8E-44 3E-48 353.8 26.3 447 1-471 9-484 (520)
15 4eco_A Uncharacterized protein 100.0 2E-43 6.9E-48 357.4 27.0 367 73-471 192-603 (636)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-42 4.5E-47 345.3 28.1 439 1-453 30-489 (520)
17 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-43 8.1E-48 353.3 22.4 438 1-452 35-517 (549)
18 4eco_A Uncharacterized protein 100.0 9.5E-43 3.3E-47 352.5 26.4 357 49-446 192-601 (636)
19 4g8a_A TOLL-like receptor 4; l 100.0 6.2E-41 2.1E-45 342.2 34.4 449 17-471 53-583 (635)
20 4ecn_A Leucine-rich repeat pro 100.0 1.3E-41 4.5E-46 349.5 26.4 443 16-484 323-873 (876)
21 4ecn_A Leucine-rich repeat pro 100.0 7.5E-41 2.6E-45 343.9 25.9 427 1-446 332-865 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-40 6.7E-45 332.2 26.6 437 16-471 31-513 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.2E-40 3.1E-44 327.4 29.1 433 1-453 40-518 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 5.4E-38 1.8E-42 307.0 27.5 385 20-453 14-416 (455)
25 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-37 5.7E-42 316.8 29.3 477 1-483 61-628 (635)
26 3v47_A TOLL-like receptor 5B a 100.0 1.3E-37 4.3E-42 304.3 25.2 376 44-471 14-411 (455)
27 2id5_A Lingo-1, leucine rich r 100.0 6.9E-36 2.3E-40 293.6 25.7 256 216-472 105-360 (477)
28 1jl5_A Outer protein YOPM; leu 100.0 5.3E-35 1.8E-39 283.1 28.9 394 14-469 9-430 (454)
29 1o6v_A Internalin A; bacterial 100.0 2E-34 6.8E-39 281.8 31.0 345 39-446 45-389 (466)
30 2id5_A Lingo-1, leucine rich r 100.0 3.8E-34 1.3E-38 281.2 28.8 346 18-449 13-360 (477)
31 1o6v_A Internalin A; bacterial 100.0 8.7E-34 3E-38 277.2 30.6 348 61-470 43-390 (466)
32 1jl5_A Outer protein YOPM; leu 100.0 3.3E-34 1.1E-38 277.5 23.8 384 1-449 20-433 (454)
33 3bz5_A Internalin-J, INLJ; leu 100.0 5.8E-33 2E-37 269.0 26.4 362 5-450 31-392 (457)
34 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-33 4.6E-38 260.5 19.2 260 215-480 50-312 (313)
35 3o6n_A APL1; leucine-rich repe 100.0 2.1E-32 7.2E-37 261.4 24.0 334 63-472 44-378 (390)
36 3bz5_A Internalin-J, INLJ; leu 100.0 4.6E-32 1.6E-36 262.7 26.1 349 26-465 28-384 (457)
37 4fmz_A Internalin; leucine ric 100.0 1.8E-31 6.1E-36 251.1 28.4 194 235-466 151-344 (347)
38 4fmz_A Internalin; leucine ric 100.0 3.3E-31 1.1E-35 249.2 29.4 212 235-484 128-347 (347)
39 3oja_B Anopheles plasmodium-re 100.0 4E-32 1.4E-36 273.3 23.8 344 63-482 50-394 (597)
40 3o6n_A APL1; leucine-rich repe 100.0 5.1E-32 1.7E-36 258.8 23.3 309 39-398 44-353 (390)
41 3oja_B Anopheles plasmodium-re 100.0 6.8E-31 2.3E-35 264.4 23.5 308 39-397 50-358 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 8.4E-34 2.9E-38 277.8 -1.1 160 286-446 255-441 (461)
43 1xku_A Decorin; proteoglycan, 100.0 3.9E-29 1.3E-33 233.2 26.5 199 216-443 122-330 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 5.2E-29 1.8E-33 232.4 25.4 127 17-150 34-160 (332)
45 1z7x_W Ribonuclease inhibitor; 100.0 8.5E-33 2.9E-37 270.7 -0.7 379 64-469 3-441 (461)
46 1ogq_A PGIP-2, polygalacturona 100.0 5.7E-30 1.9E-34 236.2 17.6 255 190-449 50-308 (313)
47 1xku_A Decorin; proteoglycan, 100.0 9E-29 3.1E-33 230.7 25.7 245 17-324 32-276 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-28 4.4E-33 229.8 23.5 198 216-443 124-331 (332)
49 1ozn_A Reticulon 4 receptor; N 100.0 5.7E-29 1.9E-33 227.0 19.5 250 218-471 14-264 (285)
50 3zyj_A Leucine-rich repeat-con 100.0 1.4E-27 4.9E-32 231.4 22.2 236 215-453 64-300 (440)
51 3ogk_B Coronatine-insensitive 100.0 3.3E-30 1.1E-34 260.4 3.1 411 6-446 63-527 (592)
52 3zyi_A Leucine-rich repeat-con 100.0 2.7E-27 9.4E-32 230.3 22.4 236 215-453 75-311 (452)
53 2z66_A Variable lymphocyte rec 100.0 8.4E-28 2.9E-32 221.7 17.7 257 215-473 28-292 (306)
54 2z66_A Variable lymphocyte rec 100.0 1.9E-27 6.5E-32 219.3 18.5 250 217-471 9-264 (306)
55 3ogk_B Coronatine-insensitive 100.0 7E-30 2.4E-34 258.0 1.4 312 158-475 190-533 (592)
56 2z80_A TOLL-like receptor 2, v 100.0 1.7E-27 5.8E-32 224.1 17.2 273 193-471 34-317 (353)
57 4fcg_A Uncharacterized protein 99.9 3.5E-26 1.2E-30 212.1 19.9 224 215-444 81-313 (328)
58 1ozn_A Reticulon 4 receptor; N 99.9 4.3E-26 1.5E-30 207.9 20.1 234 215-450 32-266 (285)
59 3zyj_A Leucine-rich repeat-con 99.9 2.6E-26 8.8E-31 222.6 19.7 249 217-471 45-295 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 2.2E-26 7.4E-31 223.9 18.8 249 217-471 56-306 (452)
61 4fcg_A Uncharacterized protein 99.9 4.6E-26 1.6E-30 211.3 19.2 223 237-465 79-311 (328)
62 2z80_A TOLL-like receptor 2, v 99.9 3.8E-26 1.3E-30 214.9 16.4 258 192-451 54-320 (353)
63 2p1m_B Transport inhibitor res 99.9 1.9E-28 6.6E-33 247.7 -0.8 258 11-271 61-346 (594)
64 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-26 1.1E-30 211.8 13.6 257 191-463 11-270 (317)
65 2p1m_B Transport inhibitor res 99.9 4.1E-28 1.4E-32 245.3 -0.3 415 19-445 46-519 (594)
66 3oja_A Leucine-rich immune mol 99.9 2.6E-25 9E-30 217.3 13.9 246 215-475 34-289 (487)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-25 6.2E-30 206.7 11.9 239 188-442 32-272 (317)
68 2o6q_A Variable lymphocyte rec 99.9 6.2E-24 2.1E-28 191.7 21.1 208 239-450 16-223 (270)
69 1p9a_G Platelet glycoprotein I 99.9 3.1E-24 1.1E-28 195.2 18.6 208 235-450 6-213 (290)
70 1wwl_A Monocyte differentiatio 99.9 1.3E-25 4.3E-30 207.2 9.3 245 191-468 44-309 (312)
71 3oja_A Leucine-rich immune mol 99.9 4.5E-25 1.5E-29 215.6 13.0 218 240-471 35-253 (487)
72 1wwl_A Monocyte differentiatio 99.9 5.4E-26 1.8E-30 209.7 5.7 243 235-485 39-311 (312)
73 2z62_A TOLL-like receptor 4, v 99.9 4.8E-24 1.7E-28 193.3 17.7 211 239-451 28-243 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 3.8E-24 1.3E-28 194.0 16.9 207 263-471 28-240 (276)
75 2o6q_A Variable lymphocyte rec 99.9 3.8E-23 1.3E-27 186.5 22.2 202 216-421 17-218 (270)
76 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-22 4E-27 202.5 26.3 268 65-432 41-308 (622)
77 3g06_A SSPH2 (leucine-rich rep 99.9 2.8E-22 9.6E-27 199.8 25.9 266 16-332 40-305 (622)
78 1p9a_G Platelet glycoprotein I 99.9 6.3E-23 2.1E-27 186.6 19.0 200 215-422 10-209 (290)
79 3rfs_A Internalin B, repeat mo 99.9 2.4E-22 8.1E-27 181.4 16.4 220 217-450 21-240 (272)
80 3rfs_A Internalin B, repeat mo 99.9 4.3E-22 1.5E-26 179.8 16.9 212 241-465 21-232 (272)
81 3m19_A Variable lymphocyte rec 99.9 3.2E-21 1.1E-25 171.9 18.2 181 263-447 14-194 (251)
82 3goz_A Leucine-rich repeat-con 99.9 3.4E-23 1.2E-27 195.2 5.5 252 195-447 3-299 (362)
83 4glp_A Monocyte differentiatio 99.9 4.5E-22 1.6E-26 183.3 11.8 228 216-469 65-308 (310)
84 3m19_A Variable lymphocyte rec 99.9 6.2E-21 2.1E-25 170.0 18.5 181 239-423 14-194 (251)
85 2xwt_C Thyrotropin receptor; s 99.9 1.1E-21 3.9E-26 173.6 13.5 196 240-465 32-236 (239)
86 2xwt_C Thyrotropin receptor; s 99.9 8.7E-22 3E-26 174.3 12.4 189 288-480 32-236 (239)
87 3goz_A Leucine-rich repeat-con 99.9 1.6E-22 5.4E-27 190.6 7.1 236 189-425 21-301 (362)
88 1h6u_A Internalin H; cell adhe 99.9 7.5E-21 2.6E-25 174.7 16.8 195 235-446 37-231 (308)
89 2ast_B S-phase kinase-associat 99.9 2.8E-22 9.4E-27 187.4 6.8 252 190-450 47-311 (336)
90 1h6u_A Internalin H; cell adhe 99.9 1E-20 3.5E-25 173.8 17.0 192 215-423 41-232 (308)
91 2ca6_A RAN GTPase-activating p 99.9 1.2E-22 4E-27 193.5 3.9 249 215-464 32-339 (386)
92 2ca6_A RAN GTPase-activating p 99.9 7.2E-23 2.4E-27 195.0 2.3 241 230-471 23-319 (386)
93 2ast_B S-phase kinase-associat 99.9 6.1E-22 2.1E-26 185.1 8.4 246 215-468 47-306 (336)
94 4glp_A Monocyte differentiatio 99.8 1.6E-20 5.6E-25 172.9 15.1 203 215-445 91-307 (310)
95 4ay9_X Follicle-stimulating ho 99.8 3E-20 1E-24 174.1 15.8 245 218-471 12-261 (350)
96 2v9t_B SLIT homolog 2 protein 99.8 1.4E-19 4.7E-24 157.4 13.9 179 290-472 14-192 (220)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-19 6E-24 156.8 13.9 177 290-471 14-192 (220)
98 2v9t_B SLIT homolog 2 protein 99.8 2.7E-19 9.4E-24 155.6 13.9 134 287-421 32-165 (220)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 6.4E-19 2.2E-23 153.2 13.6 155 313-471 13-169 (220)
100 2xot_A Amphoterin-induced prot 99.8 4E-19 1.4E-23 167.1 13.0 182 265-450 20-207 (361)
101 2o6s_A Variable lymphocyte rec 99.8 3.1E-18 1E-22 148.0 15.9 154 288-449 29-182 (208)
102 2o6s_A Variable lymphocyte rec 99.8 2.3E-18 7.9E-23 148.7 15.1 170 263-444 28-197 (208)
103 3e6j_A Variable lymphocyte rec 99.8 2.6E-18 8.8E-23 150.5 15.2 156 289-449 21-176 (229)
104 1h6t_A Internalin B; cell adhe 99.8 2.2E-18 7.4E-23 156.8 14.2 173 259-446 42-214 (291)
105 4ay9_X Follicle-stimulating ho 99.8 8.4E-18 2.9E-22 157.4 18.3 222 215-442 30-256 (350)
106 2xot_A Amphoterin-induced prot 99.8 3.6E-18 1.2E-22 160.6 14.2 177 242-422 21-203 (361)
107 3e6j_A Variable lymphocyte rec 99.8 1.2E-17 4.2E-22 146.2 15.9 155 264-423 20-174 (229)
108 1h6t_A Internalin B; cell adhe 99.8 1.2E-17 4E-22 151.9 15.3 194 218-428 27-220 (291)
109 1w8a_A SLIT protein; signaling 99.7 5.3E-18 1.8E-22 144.1 10.0 154 314-471 11-165 (192)
110 3cvr_A Invasion plasmid antige 99.7 4.9E-17 1.7E-21 160.0 17.8 186 216-430 60-252 (571)
111 3cvr_A Invasion plasmid antige 99.7 4.5E-17 1.5E-21 160.3 17.0 182 239-449 59-247 (571)
112 1m9s_A Internalin B; cell inva 99.7 8.2E-18 2.8E-22 167.5 11.6 189 241-446 23-211 (605)
113 4ezg_A Putative uncharacterize 99.7 2.2E-17 7.6E-22 141.1 12.5 151 284-466 41-192 (197)
114 4ezg_A Putative uncharacterize 99.7 2.9E-17 9.8E-22 140.4 13.0 153 260-445 41-194 (197)
115 1xeu_A Internalin C; cellular 99.7 1.4E-17 4.6E-22 149.0 10.0 170 262-447 18-187 (263)
116 1m9s_A Internalin B; cell inva 99.7 4.7E-17 1.6E-21 162.0 14.2 176 235-425 39-214 (605)
117 3sb4_A Hypothetical leucine ri 99.7 2.2E-17 7.4E-22 153.3 10.6 295 6-317 13-327 (329)
118 2wfh_A SLIT homolog 2 protein 99.7 1.2E-16 4E-21 135.7 12.5 155 314-473 13-167 (193)
119 3sb4_A Hypothetical leucine ri 99.7 5.1E-17 1.8E-21 150.8 10.7 217 238-461 100-327 (329)
120 1xeu_A Internalin C; cellular 99.7 5.7E-17 2E-21 145.0 9.6 174 237-426 17-190 (263)
121 2wfh_A SLIT homolog 2 protein 99.7 2.2E-16 7.5E-21 134.0 12.1 128 340-471 14-142 (193)
122 4fs7_A Uncharacterized protein 99.7 6E-15 2E-19 140.4 20.8 65 53-120 60-124 (394)
123 1dce_A Protein (RAB geranylger 99.7 2.9E-18 9.9E-23 169.7 -3.4 192 262-461 348-566 (567)
124 1w8a_A SLIT protein; signaling 99.7 1.5E-15 5E-20 129.0 13.8 174 290-471 11-186 (192)
125 2ell_A Acidic leucine-rich nuc 99.6 1.4E-15 4.6E-20 126.4 12.2 133 311-446 24-161 (168)
126 4fs7_A Uncharacterized protein 99.6 4.9E-14 1.7E-18 134.1 21.7 332 31-437 62-393 (394)
127 1dce_A Protein (RAB geranylger 99.6 5.4E-18 1.9E-22 167.8 -6.3 122 312-439 442-567 (567)
128 2ell_A Acidic leucine-rich nuc 99.6 2.9E-15 1E-19 124.4 11.3 135 15-152 23-162 (168)
129 2o6r_A Variable lymphocyte rec 99.6 5.7E-15 2E-19 123.7 12.5 135 313-451 9-143 (177)
130 2o6r_A Variable lymphocyte rec 99.6 5.6E-15 1.9E-19 123.8 12.4 130 290-423 10-139 (177)
131 2je0_A Acidic leucine-rich nuc 99.6 2.6E-15 8.9E-20 122.0 9.3 85 356-440 60-148 (149)
132 4b8c_D Glucose-repressible alc 99.6 1.2E-15 4.2E-20 155.8 7.2 119 305-428 218-336 (727)
133 2je0_A Acidic leucine-rich nuc 99.6 4.2E-15 1.4E-19 120.7 8.5 128 14-145 15-148 (149)
134 4fdw_A Leucine rich hypothetic 99.6 6.3E-14 2.2E-18 132.6 17.1 219 216-446 136-359 (401)
135 4fdw_A Leucine rich hypothetic 99.6 2.5E-13 8.5E-18 128.5 19.9 128 216-347 249-381 (401)
136 1a9n_A U2A', U2A'; complex (nu 99.5 9.1E-15 3.1E-19 122.3 8.3 134 308-448 16-156 (176)
137 4b8c_D Glucose-repressible alc 99.5 2.3E-15 7.7E-20 153.8 4.8 154 278-442 215-369 (727)
138 3g39_A Variable lymphocyte rec 99.5 7.6E-14 2.6E-18 115.7 10.8 110 339-451 12-121 (170)
139 1a9n_A U2A', U2A'; complex (nu 99.5 4.3E-14 1.5E-18 118.2 9.2 134 11-149 14-152 (176)
140 4gt6_A Cell surface protein; l 99.5 2.9E-12 9.8E-17 121.9 21.7 331 31-442 54-388 (394)
141 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 114.8 10.3 108 312-423 10-117 (170)
142 2r9u_A Variable lymphocyte rec 99.5 1.6E-13 5.3E-18 114.1 10.8 112 339-453 15-126 (174)
143 4gt6_A Cell surface protein; l 99.5 7.4E-12 2.5E-16 119.0 23.8 334 52-465 51-388 (394)
144 1ds9_A Outer arm dynein; leuci 99.5 8.5E-16 2.9E-20 131.3 -3.4 132 306-445 43-185 (198)
145 2r9u_A Variable lymphocyte rec 99.5 2.4E-13 8.3E-18 113.0 10.4 107 313-423 14-120 (174)
146 1ds9_A Outer arm dynein; leuci 99.5 6.7E-16 2.3E-20 131.9 -5.4 133 326-466 39-183 (198)
147 3un9_A NLR family member X1; l 99.3 2.2E-13 7.4E-18 127.7 -0.1 86 360-445 155-252 (372)
148 2ifg_A High affinity nerve gro 99.3 6.9E-12 2.4E-16 117.2 9.4 141 340-483 12-159 (347)
149 4h09_A Hypothetical leucine ri 99.3 6.8E-10 2.3E-14 105.0 22.9 81 352-434 278-358 (379)
150 2ifg_A High affinity nerve gro 99.3 1.1E-11 3.8E-16 115.8 10.0 107 363-471 11-119 (347)
151 3un9_A NLR family member X1; l 99.2 7.1E-13 2.4E-17 124.2 -0.6 161 311-471 72-255 (372)
152 4h09_A Hypothetical leucine ri 99.2 2.7E-09 9.2E-14 100.8 21.7 319 35-411 41-359 (379)
153 2ra8_A Uncharacterized protein 98.9 2.8E-09 9.7E-14 98.8 8.0 83 359-443 251-341 (362)
154 2ra8_A Uncharacterized protein 98.8 2.3E-09 8E-14 99.4 5.6 83 382-466 250-341 (362)
155 3e4g_A ATP synthase subunit S, 98.7 8.4E-09 2.9E-13 83.8 3.5 85 360-444 61-151 (176)
156 3e4g_A ATP synthase subunit S, 98.5 6.4E-08 2.2E-12 78.6 3.8 94 377-470 54-154 (176)
157 1io0_A Tropomodulin; LRR prote 98.5 3.8E-08 1.3E-12 82.3 2.4 107 339-445 39-164 (185)
158 1io0_A Tropomodulin; LRR prote 98.5 4E-08 1.4E-12 82.1 2.4 89 357-445 33-136 (185)
159 3rw6_A Nuclear RNA export fact 98.3 1.7E-07 5.7E-12 82.3 1.9 65 382-448 168-236 (267)
160 3rw6_A Nuclear RNA export fact 98.2 1.8E-06 6E-11 75.8 6.3 80 357-438 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 2.8E-05 9.5E-10 64.4 1.4 105 339-443 44-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00012 4E-09 60.6 3.6 83 360-442 41-136 (197)
163 3rfe_A Platelet glycoprotein I 97.3 0.00037 1.3E-08 53.8 5.4 56 364-421 12-68 (130)
164 3rfe_A Platelet glycoprotein I 97.0 0.0015 5E-08 50.4 6.3 63 388-452 12-75 (130)
165 2lz0_A Uncharacterized protein 89.2 0.76 2.6E-05 33.0 5.5 47 371-418 7-53 (100)
166 2lz0_A Uncharacterized protein 88.9 0.48 1.6E-05 34.1 4.2 47 395-442 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.1e-54 Score=446.51 Aligned_cols=471 Identities=33% Similarity=0.522 Sum_probs=347.8
Q ss_pred CCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccc
Q 041473 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIP 81 (488)
Q Consensus 2 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 81 (488)
|.+.+..+. ..+++|++|++++|.+.+..+. +.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|
T Consensus 188 n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 264 (768)
T 3rgz_A 188 NKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264 (768)
T ss_dssp SEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCC
T ss_pred CcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccC
Confidence 344444433 4566666666666666654444 6666666666666666665566666666666666666666654444
Q ss_pred hhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCC--cccc
Q 041473 82 FSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS--LENL 159 (488)
Q Consensus 82 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~l 159 (488)
.. .+++|++|++++|.+.+.+|..+...+++|++|++++|++....|..+..+++|++|++++|.+.+..+. +..+
T Consensus 265 ~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l 342 (768)
T 3rgz_A 265 PL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342 (768)
T ss_dssp CC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC
T ss_pred cc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcC
Confidence 33 5566666666666665555555553345666666666665555555566666666666666655433332 4555
Q ss_pred cccceeeccccccCCCCCCchh-------------------hhhhhcc--CCCccEEecCCCcccccCchhhhhhhcccc
Q 041473 160 YKLQRVSFSLNHLGNGEKDDLE-------------------FVSSLVN--ASRLEMMEISINNFGGMLPESVGNLSTRLK 218 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~-------------------~~~~l~~--~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 218 (488)
++|++|+++.|.+.......+. ....+.. ++.|+.++++++.+.+..+..+... ++|+
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~ 421 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELV 421 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCC
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCC
Confidence 5555555555544311111110 1111112 4567778888777776777777666 5788
Q ss_pred EEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCc
Q 041473 219 RFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNR 298 (488)
Q Consensus 219 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 298 (488)
+|++++|.+.+..|..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501 (768)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc
Confidence 88888888877778888888888888888888877777778888888888888888887778888888888888888888
Q ss_pred cCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCc------------------------
Q 041473 299 LEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPS------------------------ 354 (488)
Q Consensus 299 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~------------------------ 354 (488)
+.+..|.++..+++|++|++++|++.+.+|..+..++.+ ++|++++|++.+.+|.
T Consensus 502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (768)
T 3rgz_A 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhhhcccccccccccc
Confidence 888888888888888888888888888888888888777 7888888887655553
Q ss_pred ----------------------------------------------cccCCCCccEEEccCCcccCCCccccccCCCCCE
Q 041473 355 ----------------------------------------------NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQ 388 (488)
Q Consensus 355 ----------------------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 388 (488)
.+..+++|++|++++|.+++.+|..+.++++|+.
T Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 660 (768)
T 3rgz_A 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660 (768)
T ss_dssp CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred ccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE
Confidence 2344578999999999999999999999999999
Q ss_pred EecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCc
Q 041473 389 LVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNL 468 (488)
Q Consensus 389 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 468 (488)
|++++|.++...|..+.++++|+.|+|++|++++.+|..+..+++|++|++++|++++.+|..+.+.++....+.|||..
T Consensus 661 L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCcchhh
Q 041473 469 CGGISELHLSTCSIK 483 (488)
Q Consensus 469 c~~~~~l~~~~c~~~ 483 (488)
||.. ++.|.-.
T Consensus 741 cg~~----l~~C~~~ 751 (768)
T 3rgz_A 741 CGYP----LPRCDPS 751 (768)
T ss_dssp ESTT----SCCCCSC
T ss_pred cCCC----CcCCCCC
Confidence 9963 4467643
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-52 Score=433.99 Aligned_cols=373 Identities=35% Similarity=0.542 Sum_probs=227.4
Q ss_pred cCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcE
Q 041473 13 GSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSL 92 (488)
Q Consensus 13 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 92 (488)
.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+..|. +..+++|++|++++|.+++..|..+.++++|++
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred ccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCE
Confidence 334444444444444332222 25566666666666666655555 677777777777777777666777777777777
Q ss_pred EecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCC-CCCceeecccCCCccCCCC-cccccccceeecccc
Q 041473 93 LDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNA-SNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLN 170 (488)
Q Consensus 93 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 170 (488)
|++++|.+.+.+|.. .+++|++|++++|++....|..+... ++|++|++++|.+.+..+. +..+++|++|+++.|
T Consensus 252 L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 252 LNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328 (768)
T ss_dssp EECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC
Confidence 777777776555543 46777888887777776677776664 8888888888887755544 788888888888888
Q ss_pred ccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccC--CCCCCEEEccC
Q 041473 171 HLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGN--LVNLELLDLGD 248 (488)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~L~~ 248 (488)
.+... .....+..++.|+.++++.+.+.+.++..+....++|++|++++|.+.+..+..+.. +++|++|++++
T Consensus 329 ~l~~~-----ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 329 NFSGE-----LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp EEEEE-----CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred cccCc-----CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 76421 111235677788888888888776777766665446666666666655444444443 45555555555
Q ss_pred CcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccc
Q 041473 249 NQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIP 328 (488)
Q Consensus 249 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 328 (488)
|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 55554445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCcccc
Q 041473 329 TEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQ 397 (488)
Q Consensus 329 ~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 397 (488)
..+..++.+ ++|++++|++.+.+|.++..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.
T Consensus 484 ~~l~~l~~L-~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 484 SGLSNCTNL-NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp GGGGGCTTC-CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred HHHhcCCCC-CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 555555544 55555555555555555555555555555555555555555555555555555555444
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-51 Score=417.21 Aligned_cols=459 Identities=22% Similarity=0.222 Sum_probs=363.7
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccccc
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEI 80 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 80 (488)
+|.+.+..|.+|.++++|++|++++|.+.+..|.+|.++++|++|++++|.+....|..|+.+++|++|++++|.++...
T Consensus 42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence 47778888888888888888888888888777888888888888888888888777888888888888888888888666
Q ss_pred chhhhccCCCcEEecccCCcCCCCC-cchhccCCCCcEEEcCCCcccccCCccccCCCCCc--eeecccCCCccCCCCcc
Q 041473 81 PFSIYNLSSLSLLDFPVNQLQGSLP-SDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLM--RLTIQKNGFSGKVPSLE 157 (488)
Q Consensus 81 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~~~~~ 157 (488)
+..+.++++|++|++++|.+. .++ ..+. .+++|++|++++|.+....+..+..+++|+ ++++++|.+....+...
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~ 199 (606)
T 3t6q_A 122 FIPLHNQKTLESLYLGSNHIS-SIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199 (606)
T ss_dssp GSCCTTCTTCCEEECCSSCCC-CCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred cchhccCCcccEEECCCCccc-ccCccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh
Confidence 777888888888888888887 442 2333 488888888888888766677788888888 78888888776655544
Q ss_pred cccccceeecc----------------------------------------------------ccccCCCCCCchhhhhh
Q 041473 158 NLYKLQRVSFS----------------------------------------------------LNHLGNGEKDDLEFVSS 185 (488)
Q Consensus 158 ~l~~L~~L~l~----------------------------------------------------~~~~~~~~~~~~~~~~~ 185 (488)
....|+.+++. ++.+.... ...
T Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~------~~~ 273 (606)
T 3t6q_A 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS------SNT 273 (606)
T ss_dssp TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC------TTT
T ss_pred hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC------HHH
Confidence 43444444443 33332211 122
Q ss_pred hccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCC-CccccccCCCC
Q 041473 186 LVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG-RILGSIGDLQK 264 (488)
Q Consensus 186 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~ 264 (488)
+..++.|+.++++++.+. .++..+... ++|++|++++|.+....+..+..+++|++|++++|.+.. .....+..+++
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGL-STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSC-TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred hccccCCCEEeccCCccC-CCChhhccc-ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 456678888888888776 455555554 578888888888877767778888888888888887763 33445778888
Q ss_pred ccEEEcccccccCCC--CccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchh-hhcccCceeEE
Q 041473 265 LQRLRLKGNKFLGEI--PSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTE-VIGLSSLSIYL 341 (488)
Q Consensus 265 L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~~L 341 (488)
|++|++++|.+.... +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.. +..++.+ ++|
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L 430 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL-KVL 430 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC-CEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC-CEE
Confidence 899999888877544 556788899999999999888777888888999999999999887665544 5666666 899
Q ss_pred EccCCcccccCCccccCCCCccEEEccCCcccCC---CccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 342 DLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE---IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 342 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.++...+..|.++++|++|++++|
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 9999999888888899999999999999998752 2356888999999999999999888899999999999999999
Q ss_pred ccCCccchhhhccccCceeeccCcccccccCC-ccccCCcceeeecCCCCcccc
Q 041473 419 NLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 419 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~c~~ 471 (488)
++++..|..+..+++| +|++++|++++..|. .+.+++|+.++++|||+.|++
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 9998999999999999 999999999976664 567899999999999999976
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.7e-50 Score=404.63 Aligned_cols=459 Identities=19% Similarity=0.159 Sum_probs=313.2
Q ss_pred CCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccc
Q 041473 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIP 81 (488)
Q Consensus 2 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 81 (488)
|++.+..+.+|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....|..|.++++|++|++++|.++...+
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 121 (606)
T 3vq2_A 42 NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS
T ss_pred CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccc
Confidence 44555555555555555555555555554445555555555555555555554445555555555555555555553343
Q ss_pred hhhhccCCCcEEecccCCcCC-CCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCc----eeecccCCCccCCCCc
Q 041473 82 FSIYNLSSLSLLDFPVNQLQG-SLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLM----RLTIQKNGFSGKVPSL 156 (488)
Q Consensus 82 ~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~ 156 (488)
..+.++++|++|++++|.+.+ .+|..+. .+++|++|++++|++....+..+..+.+++ ++++++|.+....+..
T Consensus 122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~ 200 (606)
T 3vq2_A 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCGGGG-TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT
T ss_pred cccCCCCCCCEEeCCCCcccceechHhHh-hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCccc
Confidence 445555555555555555542 2344433 455555555555555544444444333332 4555555554444443
Q ss_pred ccccccceeeccccccCCC---------------------------------------------------CCCchhhhhh
Q 041473 157 ENLYKLQRVSFSLNHLGNG---------------------------------------------------EKDDLEFVSS 185 (488)
Q Consensus 157 ~~l~~L~~L~l~~~~~~~~---------------------------------------------------~~~~~~~~~~ 185 (488)
....+|+.++++++.+... ...-......
T Consensus 201 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 280 (606)
T 3vq2_A 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280 (606)
T ss_dssp TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS
T ss_pred ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc
Confidence 3333666666666543200 0000011111
Q ss_pred hccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCc
Q 041473 186 LVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKL 265 (488)
Q Consensus 186 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L 265 (488)
+..++.|+.++++++.+.. ++ .+... ++|++|++.+|.+. .+|. + .+++|++|++++|.... ...+..+++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~-l~-~l~~~-~~L~~L~l~~n~l~-~lp~-~-~l~~L~~L~l~~n~~~~--~~~~~~l~~L 352 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKY-LE-DVPKH-FKWQSLSIIRCQLK-QFPT-L-DLPFLKSLTLTMNKGSI--SFKKVALPSL 352 (606)
T ss_dssp CGGGTTCSEEEEESCCCCC-CC-CCCTT-CCCSEEEEESCCCS-SCCC-C-CCSSCCEEEEESCSSCE--ECCCCCCTTC
T ss_pred cccCCCCCEEEecCccchh-hh-hcccc-ccCCEEEcccccCc-cccc-C-CCCccceeeccCCcCcc--chhhccCCCC
Confidence 4445666666666665532 22 33333 47777888777773 4553 4 77788888888775432 2255678889
Q ss_pred cEEEcccccccCC--CCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccc-hhhhcccCceeEEE
Q 041473 266 QRLRLKGNKFLGE--IPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIP-TEVIGLSSLSIYLD 342 (488)
Q Consensus 266 ~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~~L~ 342 (488)
++|++++|.+... .+..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+.+..+ ..+..++.+ ++|+
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~ 430 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLD 430 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEE
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccC-CEEE
Confidence 9999998887644 3667788999999999999887 456788889999999999999986666 566677777 8999
Q ss_pred ccCCcccccCCccccCCCCccEEEccCCcccC-CCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC
Q 041473 343 LSKNQLNGPLPSNFGILKNLGVLDVSENKLSG-EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 343 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 421 (488)
+++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.++...+..|.++++|++|++++|+++
T Consensus 431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence 99999998888999999999999999999986 37888999999999999999999888899999999999999999999
Q ss_pred CccchhhhccccCceeeccCcccccccCCccccC-CcceeeecCCCCcccc
Q 041473 422 GRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFS-NSSAISLDGNDNLCGG 471 (488)
Q Consensus 422 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~l~l~~n~~~c~~ 471 (488)
+..|..|..+++|++|++++|+++...+....++ +|+.|++++||+.|++
T Consensus 511 ~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCC
Confidence 8889999999999999999999985444456665 6999999999999976
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-48 Score=395.80 Aligned_cols=470 Identities=21% Similarity=0.218 Sum_probs=363.3
Q ss_pred cCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhc
Q 041473 7 KVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYN 86 (488)
Q Consensus 7 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 86 (488)
.+|..+. +.+++|++++|.+++..+.+|.++++|++|++++|.+....|.+|.++++|++|++++|.++...|..+.+
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 4555544 37999999999999877899999999999999999999888999999999999999999999888999999
Q ss_pred cCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCC-cccccccc--
Q 041473 87 LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQ-- 163 (488)
Q Consensus 87 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~-- 163 (488)
+++|++|++++|.++ .++...+..+++|++|++++|++....+..+..+++|++|++++|.+....+. +..+++|+
T Consensus 104 l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 104 PKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp CTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred cccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence 999999999999998 55433344799999999999999864445555699999999999998876554 78888888
Q ss_pred eeeccccccCCCCCCchhhh-----------------hh--------------------------hccC--CCccEEecC
Q 041473 164 RVSFSLNHLGNGEKDDLEFV-----------------SS--------------------------LVNA--SRLEMMEIS 198 (488)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~-----------------~~--------------------------l~~~--~~L~~l~l~ 198 (488)
.+++++|.+.......+... .. +..+ ..++.++++
T Consensus 183 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~ 262 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee
Confidence 88888887764332211110 00 0000 156677777
Q ss_pred CCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCC
Q 041473 199 INNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGE 278 (488)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 278 (488)
++.+.+..+..+... ++|++|++++|.++ .+|..+..+++|++|++++|.+....+..+..+++|++|++++|.+...
T Consensus 263 ~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 263 KHYFFNISSNTFHCF-SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp TCCCSSCCTTTTTTC-TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred cCccCccCHHHhccc-cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence 776665555445554 57888888888777 5566677888888888888887766667777788888888888876643
Q ss_pred CC-ccccCCccccEEecCCCccCCCC--CccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCC-c
Q 041473 279 IP-SSVGNLTLLFTLSFEGNRLEGSI--PSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLP-S 354 (488)
Q Consensus 279 ~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~-~ 354 (488)
.+ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+ .
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL-ELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC-SEEECTTCCEECCTTCC
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC-CeEECCCCcCCCcccch
Confidence 33 44778888888888888877554 6677788888888888888876667777777776 788888888875544 3
Q ss_pred cccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCcccccc---CcccccCCCCCCEEeccCcccCCccchhhhcc
Q 041473 355 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGN---IPSSFSSLRGIQNLDLSRNNLSGRIPKYFENF 431 (488)
Q Consensus 355 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 431 (488)
.+..+++|++|++++|.+....+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|++++..|..|..+
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 477888888888888888877777788888888888888887652 23567788888888888888887778888888
Q ss_pred ccCceeeccCcccccccC-CccccCCcceeeecCCCCc---------cccccccccCcchhh
Q 041473 432 FFLQNLNLSSNHFEGEVP-IKGVFSNSSAISLDGNDNL---------CGGISELHLSTCSIK 483 (488)
Q Consensus 432 ~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~---------c~~~~~l~~~~c~~~ 483 (488)
++|++|++++|++++..| ....+++| .|++++|... +..++.|++++|++.
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 888888888888887554 45667778 8888888765 345677888887653
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.6e-48 Score=396.49 Aligned_cols=463 Identities=22% Similarity=0.229 Sum_probs=301.2
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccccc
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEI 80 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 80 (488)
+|.+.+..+.+|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....+.+|..+++|++|++++|.++...
T Consensus 34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence 46777777778888888888888888888777777888888888888888877666667888888888888888877555
Q ss_pred chhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCcccc--CCCCCceeecccCCCccCCCC---
Q 041473 81 PFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASIS--NASNLMRLTIQKNGFSGKVPS--- 155 (488)
Q Consensus 81 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~--- 155 (488)
+..|.++++|++|++++|.+.+..+..+. .+++|++|++++|.+....+..+. .+++|++|++++|.+....+.
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 192 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCCCCCSSS-CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG
T ss_pred hhHccccCCCCEEECCCCcccccCchhhc-ccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhh
Confidence 66777888888888888877744343333 577777777777766543333322 345666666666555443322
Q ss_pred -------------------------------------------------cccccc--cceeeccccccCCCCCCchhhhh
Q 041473 156 -------------------------------------------------LENLYK--LQRVSFSLNHLGNGEKDDLEFVS 184 (488)
Q Consensus 156 -------------------------------------------------~~~l~~--L~~L~l~~~~~~~~~~~~~~~~~ 184 (488)
+..++. |+.|++++|.+... ...
T Consensus 193 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~------~~~ 266 (680)
T 1ziw_A 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV------GND 266 (680)
T ss_dssp GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE------CTT
T ss_pred hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc------Ccc
Confidence 111211 44444444433221 112
Q ss_pred hhccCCCccEEecCCCcccccCchhhhhh--------------------------------hccccEEEccccccccccc
Q 041473 185 SLVNASRLEMMEISINNFGGMLPESVGNL--------------------------------STRLKRFTVGNNQLFGNIP 232 (488)
Q Consensus 185 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~--------------------------------~~~L~~L~l~~~~~~~~~~ 232 (488)
.+..++.|+.++++++.+.+..+..+... .++|++|++++|.+....+
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 346 (680)
T 1ziw_A 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346 (680)
T ss_dssp TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT
T ss_pred cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh
Confidence 23344555555555554433322222111 1345555555555554444
Q ss_pred hhccCCCCCCEEEccCCc----------------------------CCCCccccccCCCCccEEEcccccccCCCC-ccc
Q 041473 233 SGLGNLVNLELLDLGDNQ----------------------------FTGRILGSIGDLQKLQRLRLKGNKFLGEIP-SSV 283 (488)
Q Consensus 233 ~~l~~l~~L~~L~L~~~~----------------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~ 283 (488)
..+..+++|++|++++|. +....+..+..+++|+.|++++|.+.+..+ ..+
T Consensus 347 ~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 426 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426 (680)
T ss_dssp TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGG
T ss_pred hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccc
Confidence 445555555555554432 222223334444555555555554433222 344
Q ss_pred cCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCc--cccchhhhcccCceeEEEccCCcccccCCccccCCCC
Q 041473 284 GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLT--GTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKN 361 (488)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~ 361 (488)
..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..++.+ ++|++++|.+.+..+..|..+++
T Consensus 427 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~~ 505 (680)
T 1ziw_A 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL-TILDLSNNNIANINDDMLEGLEK 505 (680)
T ss_dssp TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC-CEEECCCCCCCcCChhhhccccc
Confidence 45555555555555555444555555666666666666543 3456666677777 88999999888777778888899
Q ss_pred ccEEEccCCcccCCCc--------cccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhcccc
Q 041473 362 LGVLDVSENKLSGEIP--------NSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFF 433 (488)
Q Consensus 362 L~~L~l~~n~l~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 433 (488)
|++|++++|.+++..+ ..+.++++|++|++++|.+....+..|.++++|+.|++++|+++...+..|..+++
T Consensus 506 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 585 (680)
T 1ziw_A 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585 (680)
T ss_dssp CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCC
Confidence 9999999998874321 23678899999999999998666678999999999999999999777788899999
Q ss_pred CceeeccCcccccccCC-cc-ccCCcceeeecCCCCcccc
Q 041473 434 LQNLNLSSNHFEGEVPI-KG-VFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 434 L~~L~l~~n~~~~~~~~-~~-~~~~L~~l~l~~n~~~c~~ 471 (488)
|+.|++++|++++..+. .+ .+++|+.+++++|||.|++
T Consensus 586 L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp CCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 99999999999865543 23 6889999999999999987
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.1e-47 Score=389.37 Aligned_cols=474 Identities=20% Similarity=0.198 Sum_probs=306.9
Q ss_pred CcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhcc
Q 041473 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNL 87 (488)
Q Consensus 8 l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 87 (488)
+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+....|..|..+++|++|++++|.++...+..|.++
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccC
Confidence 555443 689999999999997777889999999999999999998889999999999999999999995555579999
Q ss_pred CCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCC---cccccccce
Q 041473 88 SSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS---LENLYKLQR 164 (488)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~L~~ 164 (488)
++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+. ...+++|+.
T Consensus 97 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 97 TNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp TTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 99999999999998 66655555899999999999999877788899999999999999988766554 235589999
Q ss_pred eeccccccCCCCCCchhhhhhh---------------------ccCCCccEEecCCCcccccCchhhhhhh-ccccEEEc
Q 041473 165 VSFSLNHLGNGEKDDLEFVSSL---------------------VNASRLEMMEISINNFGGMLPESVGNLS-TRLKRFTV 222 (488)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~l---------------------~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l 222 (488)
|++++|.+.......+.....+ ...+.|+.++++++.+.+..+..+.... ++|++|++
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 9999998765443322211111 1225677777777776666565555542 24788888
Q ss_pred cccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEc--------------------------------
Q 041473 223 GNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRL-------------------------------- 270 (488)
Q Consensus 223 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l-------------------------------- 270 (488)
++|.+....+..++.+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 887777666667777777778877777666554444555555555555
Q ss_pred -ccccccCCCCccccCCccccEEecCCCc----------------------------cCCCCCccccCCCCCcEEEccCC
Q 041473 271 -KGNKFLGEIPSSVGNLTLLFTLSFEGNR----------------------------LEGSIPSSLGKCKNLILLDLSNN 321 (488)
Q Consensus 271 -~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------------------~~~~~~~~~~~~~~L~~L~l~~~ 321 (488)
++|.+.+..+..+..+++|++|++++|. +.+..+.++..+++|+.|++++|
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence 4444443333334444444444443332 11112223333344444444444
Q ss_pred cCccccc-hhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc--CCCccccccCCCCCEEecCCccccc
Q 041473 322 NLTGTIP-TEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS--GEIPNSLGSCVRLEQLVMNGNFFQG 398 (488)
Q Consensus 322 ~~~~~~~-~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~ 398 (488)
.+.+.++ ..+..++.+ +++++++|.+.+..+..|..+++|++|++++|.+. +..|..+..+++|+.|++++|.++.
T Consensus 416 ~l~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 416 EIGQELTGQEWRGLENI-FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp CCEEECCSGGGTTCTTC-CEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred cCccccCcccccCcccc-cEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 4433222 222233333 44444444444334444444444555555544443 2445556666666666666666665
Q ss_pred cCcccccCCCCCCEEeccCcccCCccc--------hhhhccccCceeeccCcccccccC-CccccCCcceeeecCCCCc-
Q 041473 399 NIPSSFSSLRGIQNLDLSRNNLSGRIP--------KYFENFFFLQNLNLSSNHFEGEVP-IKGVFSNSSAISLDGNDNL- 468 (488)
Q Consensus 399 ~~~~~~~~l~~L~~L~l~~n~~~~~~~--------~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~- 468 (488)
..+.+|.++++|+.|++++|+++...+ ..|.++++|++|++++|.++...+ ..+.+++|+.|++++|...
T Consensus 495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc
Confidence 555566666666666666666653311 225566666666666666663222 2455667777777776432
Q ss_pred --------cccccccccCcchhhhc
Q 041473 469 --------CGGISELHLSTCSIKES 485 (488)
Q Consensus 469 --------c~~~~~l~~~~c~~~~~ 485 (488)
+.+++.|++++|++...
T Consensus 575 l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 575 LPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred CCHhHhCCCCCCCEEECCCCcCCcc
Confidence 45566677777766543
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-46 Score=379.61 Aligned_cols=455 Identities=22% Similarity=0.193 Sum_probs=365.5
Q ss_pred CcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhcc
Q 041473 8 VPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNL 87 (488)
Q Consensus 8 l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 87 (488)
+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+....|.+|.++++|++|++++|.++...|..|.++
T Consensus 26 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 26 VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 444443 789999999999997778899999999999999999998889999999999999999999997779999999
Q ss_pred CCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccc-cCCccccCCCCCceeecccCCCccCCCC-cccccccc--
Q 041473 88 SSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG-PIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQ-- 163 (488)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~-- 163 (488)
++|++|++++|.+. .++...+..+++|++|++++|.+.. ..|..+.++++|++|++++|.+....+. +..+.+|+
T Consensus 104 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 104 TSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182 (606)
T ss_dssp TTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred ccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence 99999999999998 6664444589999999999999875 4688999999999999999999876554 67776665
Q ss_pred --eeeccccccCCCCCCchhhhhhhccCCCccEEecCCCccc--------------------------------------
Q 041473 164 --RVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFG-------------------------------------- 203 (488)
Q Consensus 164 --~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~-------------------------------------- 203 (488)
+++++.+.+...+... .....|+.++++++.+.
T Consensus 183 l~~L~l~~n~l~~~~~~~-------~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 183 NLSLDMSLNPIDFIQDQA-------FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp CCEEECTTCCCCEECTTT-------TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred cceeeccCCCcceeCccc-------ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence 7999998876433221 11224555555554332
Q ss_pred --------------------ccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCC
Q 041473 204 --------------------GMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQ 263 (488)
Q Consensus 204 --------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~ 263 (488)
+..+. +.. .++++.+++.++.+.. .+ .+..+++|++|++++|.+. ..+ .+ .++
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~~-~~~-l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~ 328 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIVK-FHC-LANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLP 328 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGGS-CGG-GTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCS
T ss_pred hhhhhccHhheeccccccccccccc-ccc-CCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-ccc-cC-CCC
Confidence 11111 222 2577888888887753 44 6777888888888888884 344 34 788
Q ss_pred CccEEEcccccccCCCCccccCCccccEEecCCCccCCC--CCccccCCCCCcEEEccCCcCccccchhhhcccCceeEE
Q 041473 264 KLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGS--IPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYL 341 (488)
Q Consensus 264 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L 341 (488)
+|++|++++|...... .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+. .+|..+..++.+ ++|
T Consensus 329 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L-~~L 404 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL-QHL 404 (606)
T ss_dssp SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTC-CEE
T ss_pred ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCC-Cee
Confidence 8888888888544322 566889999999999988755 3777888899999999999887 566777777777 899
Q ss_pred EccCCcccccCC-ccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccc-cCcccccCCCCCCEEeccCcc
Q 041473 342 DLSKNQLNGPLP-SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG-NIPSSFSSLRGIQNLDLSRNN 419 (488)
Q Consensus 342 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~ 419 (488)
++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ ..+..+.++++|+.|++++|.
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 999999987766 678889999999999999988888889999999999999999886 468889999999999999999
Q ss_pred cCCccchhhhccccCceeeccCcccccccC-CccccCCcceeeecCCCCc--------c-ccccccccCcchhh
Q 041473 420 LSGRIPKYFENFFFLQNLNLSSNHFEGEVP-IKGVFSNSSAISLDGNDNL--------C-GGISELHLSTCSIK 483 (488)
Q Consensus 420 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~--------c-~~~~~l~~~~c~~~ 483 (488)
+++..|..|..+++|++|++++|++++..| ....+++|+.|++++|... . ..++.|++++|++.
T Consensus 485 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence 998888899999999999999999987655 4667899999999999865 2 24778888887654
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.6e-47 Score=394.45 Aligned_cols=451 Identities=22% Similarity=0.218 Sum_probs=252.6
Q ss_pred ccCcEEeccCCCCCCCcCccccCCcccccccccccccc-cccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEe
Q 041473 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFV-GQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLD 94 (488)
Q Consensus 16 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 94 (488)
+++++|++++|.+++..+..|.++++|++|++++|... .+.|.+|.++++|++|++++|.+....|..|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 45666666666655555555666666666666655332 23355556666666666666665555555566666666666
Q ss_pred cccCCcCCCCCcc-hhccCCCCcEEEcCCCcccccCC-ccccCCCCCceeecccCCCccCCCC-cccc--cccceeeccc
Q 041473 95 FPVNQLQGSLPSD-IGFTLPNLEVLNFGNNQFTGPIP-ASISNASNLMRLTIQKNGFSGKVPS-LENL--YKLQRVSFSL 169 (488)
Q Consensus 95 l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l--~~L~~L~l~~ 169 (488)
+++|.+.+.++.. .+..+++|++|++++|.+....+ ..+.++++|++|++++|.+....+. +..+ ++|+.++++.
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 6666555333332 22245566666666665543322 3455566666666665555443322 3333 4455555554
Q ss_pred cccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhh------------------------------------h
Q 041473 170 NHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGN------------------------------------L 213 (488)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~------------------------------------~ 213 (488)
|.+.......+...........|+.++++++.+....+..+.. .
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 4443311111110000001112444444444322211111110 0
Q ss_pred -hccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEE
Q 041473 214 -STRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTL 292 (488)
Q Consensus 214 -~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 292 (488)
.++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 1345555555555554444555555555555555555554444455555555555555555554444455555555555
Q ss_pred ecCCCccCCCCCccccCCCCCcEEEccCCcCcc------------------ccch----------------------hhh
Q 041473 293 SFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTG------------------TIPT----------------------EVI 332 (488)
Q Consensus 293 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------------~~~~----------------------~~~ 332 (488)
++++|.+....+..+..+++|++|++++|.+++ .+|. .+.
T Consensus 344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~ 423 (844)
T 3j0a_A 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423 (844)
T ss_dssp ECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHT
T ss_pred ECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhh
Confidence 555555554444445555555555555554431 1111 112
Q ss_pred cccCceeEEEccCCcccccCCc-cccCCCCccEEEccCCccc-----CCCccccccCCCCCEEecCCccccccCcccccC
Q 041473 333 GLSSLSIYLDLSKNQLNGPLPS-NFGILKNLGVLDVSENKLS-----GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSS 406 (488)
Q Consensus 333 ~~~~l~~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 406 (488)
.++.+ ++|++++|.+.+..+. .+..+++|++|++++|.+. +..+..|..+++|+.|++++|.++...+..|.+
T Consensus 424 ~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 424 RVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp TCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred cCCcc-ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc
Confidence 33444 5666666666533222 3444567777777777665 233355777888888999998888778888888
Q ss_pred CCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCcccc
Q 041473 407 LRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 407 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
+++|+.|+|++|++++..+..+. ++|+.|++++|.+++..| ..+.+|+.++++|||+.|++
T Consensus 503 l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~--~~~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 503 LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP--DVFVSLSVLDITHNKFICEC 563 (844)
T ss_dssp CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS--CCCSSCCEEEEEEECCCCSS
T ss_pred hhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh--hHhCCcCEEEecCCCccccc
Confidence 89999999999988877666655 789999999999887666 34679999999999999965
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-46 Score=378.37 Aligned_cols=445 Identities=24% Similarity=0.224 Sum_probs=316.2
Q ss_pred ccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEec
Q 041473 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDF 95 (488)
Q Consensus 16 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 95 (488)
+++++|++++|.+++..+.+|.++++|++|++++|.+....+.+|.++++|++|++++|.++...+..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 35667777776666555556666777777777777666565666666777777777776666555566666677777777
Q ss_pred ccCCcCCCCCcchhccCCCCcEEEcCCCcccc-cCCccccCCCCCceeecccCCCccCCCC-ccccccc----ceeeccc
Q 041473 96 PVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG-PIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKL----QRVSFSL 169 (488)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L----~~L~l~~ 169 (488)
++|.+. .++...+..+++|++|++++|.+.. ..|..+.++++|++|++++|.+....+. +..+++| +.++++.
T Consensus 108 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 776666 4444333356667777776666653 2466666666777777766666544332 4455555 5555555
Q ss_pred cccCCCCCCch------------------hhhhhhccCCCc--------------------------------cEEecCC
Q 041473 170 NHLGNGEKDDL------------------EFVSSLVNASRL--------------------------------EMMEISI 199 (488)
Q Consensus 170 ~~~~~~~~~~~------------------~~~~~l~~~~~L--------------------------------~~l~l~~ 199 (488)
+.+.......+ .....+..++.+ +.+++..
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 54443221110 011111111222 2222222
Q ss_pred C-cccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCC
Q 041473 200 N-NFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGE 278 (488)
Q Consensus 200 ~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 278 (488)
+ .+.+..+..+... +++++++++++.+. ..|.++..+ +|++|++++|.+..... ..+++|+.|++++|.+...
T Consensus 267 ~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 267 LDYYLDDIIDLFNCL-TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp TTEEESCSTTTTGGG-TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCB
T ss_pred chhhhhhchhhhcCc-CcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCccccc
Confidence 2 2223333444444 58888888888877 466667777 88999998888773332 3578899999999887654
Q ss_pred CCccccCCccccEEecCCCccCCCC--CccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCC-cc
Q 041473 279 IPSSVGNLTLLFTLSFEGNRLEGSI--PSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLP-SN 355 (488)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~-~~ 355 (488)
.+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+. .++..+..++.+ ++|++++|.+.+..+ ..
T Consensus 341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL-EHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTC-CEEECTTSEEESCTTSCT
T ss_pred ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCC-CEEEccCCccccccchhh
Confidence 443 67899999999999887543 567788999999999999988 445457777777 899999999986655 57
Q ss_pred ccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCcccc-ccCcccccCCCCCCEEeccCcccCCccchhhhccccC
Q 041473 356 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQ-GNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFL 434 (488)
Q Consensus 356 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 434 (488)
+..+++|++|++++|.+....+..+..+++|++|++++|.+. ...|..+..+++|+.|++++|++++..|..|..+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 888999999999999999888889999999999999999987 4678889999999999999999998889999999999
Q ss_pred ceeeccCcccccccCC-ccccCCcceeeecCCCCcccc
Q 041473 435 QNLNLSSNHFEGEVPI-KGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 435 ~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~c~~ 471 (488)
++|++++|++++..+. ...+++|+.|++++||+.|++
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 9999999999876553 567899999999999999875
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-45 Score=383.61 Aligned_cols=439 Identities=21% Similarity=0.208 Sum_probs=320.0
Q ss_pred cEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccccc-chhhhccCCCcEEeccc
Q 041473 19 RTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEI-PFSIYNLSSLSLLDFPV 97 (488)
Q Consensus 19 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~ 97 (488)
+..+.+++.++ .+|. ..++|+.|++++|.+....+..|..+++|++|++++|.....+ |..|.++++|++|++++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 46788888888 5665 4578999999999999888999999999999999999554344 78899999999999999
Q ss_pred CCcCCCCCcchhccCCCCcEEEcCCCcccccCCcc--ccCCCCCceeecccCCCccCCC--CcccccccceeeccccccC
Q 041473 98 NQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPAS--ISNASNLMRLTIQKNGFSGKVP--SLENLYKLQRVSFSLNHLG 173 (488)
Q Consensus 98 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~ 173 (488)
|.+.+..|..+. .+++|++|++++|.+....+.. +..+++|++|++++|.+....+ .+..+++|++|++++|.+.
T Consensus 83 N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SKIYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCCEECTTSSC-SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CcCcccCHhHcc-CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 999844455555 7999999999999998655554 8899999999999999987654 3899999999999999887
Q ss_pred CCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhh-----ccccEEEccccccccccchhcc------------
Q 041473 174 NGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLS-----TRLKRFTVGNNQLFGNIPSGLG------------ 236 (488)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~------------ 236 (488)
......+.... . +.|+.++++.+.+....+..+.... ..|+.|++++|.+....+..+.
T Consensus 162 ~~~~~~l~~l~---~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 162 LVCEHELEPLQ---G-KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp CCCSGGGHHHH---H-CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred eeCHHHccccc---C-CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 65443333221 1 7899999999988766554433321 1499999999866543332221
Q ss_pred ------------------------C--CCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCcccc
Q 041473 237 ------------------------N--LVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLF 290 (488)
Q Consensus 237 ------------------------~--l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 290 (488)
+ .++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 1 26899999999999877788899999999999999999888888899999999
Q ss_pred EEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCC-----------------
Q 041473 291 TLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLP----------------- 353 (488)
Q Consensus 291 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~----------------- 353 (488)
+|++++|.+.+..+..+..+++|+.|++++|.+....+..+..++.+ ++|++++|.+.+...
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l 396 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL-QTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL 396 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC-CEEEEETCCSCCCSSCCSCSEEEEESCCCCCC
T ss_pred EEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC-CEEECCCCCCCcccCCCCcchhccCCCCcccc
Confidence 99999999998889999999999999999999986666667777777 899999988763211
Q ss_pred -c----------------------cccCCCCccEEEccCCcccCCCcc-ccccCCCCCEEecCCccccc-----cCcccc
Q 041473 354 -S----------------------NFGILKNLGVLDVSENKLSGEIPN-SLGSCVRLEQLVMNGNFFQG-----NIPSSF 404 (488)
Q Consensus 354 -~----------------------~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~-----~~~~~~ 404 (488)
. .+..+++|++|++++|.++...+. .+..+++|+.|++++|.+.. ..+..|
T Consensus 397 ~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 476 (844)
T 3j0a_A 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476 (844)
T ss_dssp CCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred cccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhh
Confidence 0 011334444444444444422111 23334555555555555431 222345
Q ss_pred cCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCc
Q 041473 405 SSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNL 468 (488)
Q Consensus 405 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 468 (488)
.++++|+.|++++|.+++..|..|.++++|+.|++++|.+++ +|.....++|+.|++++|...
T Consensus 477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDLPANLEILDISRNQLL 539 (844)
T ss_dssp SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCCCSCCCEEEEEEECCC
T ss_pred cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhhhccccEEECCCCcCC
Confidence 555666666666666665555556666666666666666653 332333356666666666544
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.8e-44 Score=360.06 Aligned_cols=448 Identities=20% Similarity=0.254 Sum_probs=332.3
Q ss_pred CCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccc
Q 041473 2 NELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIP 81 (488)
Q Consensus 2 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 81 (488)
|+++. +|..+. ++|++|++++|.+++..+.+|.++++|++|++++|++....+.+|..+++|++|++++|.+++..+
T Consensus 15 ~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 15 RSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp SCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred Ccccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 34443 444443 789999999999987778889999999999999999988888889999999999999999997777
Q ss_pred hhhhccCCCcEEecccCCcCC-CCCcchhccCCCCcEEEcCCCc-ccccCCccccCCCCCceeecccCCCccCCC-Cccc
Q 041473 82 FSIYNLSSLSLLDFPVNQLQG-SLPSDIGFTLPNLEVLNFGNNQ-FTGPIPASISNASNLMRLTIQKNGFSGKVP-SLEN 158 (488)
Q Consensus 82 ~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~ 158 (488)
..+.++++|++|++++|.+.+ ..|..+. .+++|++|++++|. +....+..+..+++|++|++++|.+.+..+ .+..
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhh-ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 779999999999999999873 2344444 78999999999988 443334678899999999999999887544 4888
Q ss_pred ccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccC--chhhhhhhccccEEEccccccccccch---
Q 041473 159 LYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGML--PESVGNLSTRLKRFTVGNNQLFGNIPS--- 233 (488)
Q Consensus 159 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~--- 233 (488)
+++|+.++++.+.... ........++.|+.++++++.+.+.. +..+....++++++++.++.+.+..+.
T Consensus 171 l~~L~~L~l~~n~~~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 171 IRDIHHLTLHLSESAF------LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp CSEEEEEEEECSBSTT------HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred cccCceEecccCcccc------cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 8889999988877642 11122345778888888888765431 112222234666676666655432222
Q ss_pred -hccCCCCCCEEEccCCcCCCC------------------------------c-----cccccCCCCccEEEcccccccC
Q 041473 234 -GLGNLVNLELLDLGDNQFTGR------------------------------I-----LGSIGDLQKLQRLRLKGNKFLG 277 (488)
Q Consensus 234 -~l~~l~~L~~L~L~~~~~~~~------------------------------~-----~~~l~~l~~L~~L~l~~~~~~~ 277 (488)
.+..+++|+.+++++|.+.+. . ...+...++|+.|++++|.+.
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~- 323 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-
T ss_pred HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-
Confidence 223445555555555443211 0 001122356888888888776
Q ss_pred CCCccc-cCCccccEEecCCCccCCCCC---ccccCCCCCcEEEccCCcCccccc--hhhhcccCceeEEEccCCccccc
Q 041473 278 EIPSSV-GNLTLLFTLSFEGNRLEGSIP---SSLGKCKNLILLDLSNNNLTGTIP--TEVIGLSSLSIYLDLSKNQLNGP 351 (488)
Q Consensus 278 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~l~~~L~l~~~~~~~~ 351 (488)
..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+ ..+..++.+ ++|++++|.+. .
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~ 401 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL-TSLDISRNTFH-P 401 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC-CEEECTTCCCC-C
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC-CEEECCCCCCc-c
Confidence 445444 578999999999998876543 336678899999999998873321 346667777 89999999988 6
Q ss_pred CCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhcc
Q 041473 352 LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENF 431 (488)
Q Consensus 352 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 431 (488)
+|..+..+++|++|++++|.++ .++..+ .++|+.|++++|+++.. ..++++|++|++++|+++ .+|. ...+
T Consensus 402 lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l 472 (549)
T 2z81_A 402 MPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLF 472 (549)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGC
T ss_pred CChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccC
Confidence 7777888889999999999987 555444 36899999999988743 357899999999999998 5565 4678
Q ss_pred ccCceeeccCcccccccCC-ccccCCcceeeecCCCCcccc
Q 041473 432 FFLQNLNLSSNHFEGEVPI-KGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 432 ~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~c~~ 471 (488)
++|++|++++|++++..|. ...+++|+.|++++||+.|++
T Consensus 473 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred ccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 9999999999999976664 678999999999999999876
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=357.52 Aligned_cols=448 Identities=21% Similarity=0.206 Sum_probs=358.1
Q ss_pred CcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEeccc
Q 041473 18 LRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPV 97 (488)
Q Consensus 18 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 97 (488)
.+.++.++..++ .+|..+. ++++.|++++|.+....+..|..+++|++|++++|.++...+..|.++++|++|++++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 456777777777 5665543 5799999999999888888999999999999999999977788899999999999999
Q ss_pred CCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccC--CCCcccccccceeeccccccCCC
Q 041473 98 NQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGK--VPSLENLYKLQRVSFSLNHLGNG 175 (488)
Q Consensus 98 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~ 175 (488)
|.+. .++...+..+++|++|++++|++....+..+..+++|++|++++|.+... +..+..+++|+.|++++|.+...
T Consensus 86 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 86 NPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred CcCC-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 9998 56655555899999999999999855555789999999999999998763 34489999999999999988654
Q ss_pred CCCchhhhhhhccCCCc-cEEecCCCcccccCchhhhhhhccccEEEcccc-----------------------------
Q 041473 176 EKDDLEFVSSLVNASRL-EMMEISINNFGGMLPESVGNLSTRLKRFTVGNN----------------------------- 225 (488)
Q Consensus 176 ~~~~~~~~~~l~~~~~L-~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~----------------------------- 225 (488)
....+.. +..++.+ +.++++.+.+....+..+... ++++++++++
T Consensus 165 ~~~~~~~---l~~L~~~~~~L~l~~n~l~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 165 YCTDLRV---LHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp CGGGGHH---HHTCTTCCCEEECTTCCCCEECTTTTTTC--EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred cHHHccc---hhccchhhhhcccCCCCceecCHHHhccC--cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 3322222 2222111 577777776654444333322 4555555443
Q ss_pred -----------------------------ccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEccccccc
Q 041473 226 -----------------------------QLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFL 276 (488)
Q Consensus 226 -----------------------------~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 276 (488)
.+....+..+..+++|++|+++++.+.. .+..+..+ +|++|++++|.+.
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc
Confidence 3333455667778999999999998874 55566667 9999999999887
Q ss_pred CCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCcccc--chhhhcccCceeEEEccCCcccccCCc
Q 041473 277 GEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTI--PTEVIGLSSLSIYLDLSKNQLNGPLPS 354 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~~L~l~~~~~~~~~~~ 354 (488)
..+. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+.+.. +..+..++.+ ++|++++|.+.+..+.
T Consensus 318 -~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~ 391 (570)
T 2z63_A 318 -QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL-KYLDLSFNGVITMSSN 391 (570)
T ss_dssp -SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC-CEEECCSCSEEEEEEE
T ss_pred -ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCcc-CEEECCCCcccccccc
Confidence 4443 4788999999999988755544 67899999999999987443 6777788887 8999999999855544
Q ss_pred cccCCCCccEEEccCCcccCCCc-cccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC-Cccchhhhccc
Q 041473 355 NFGILKNLGVLDVSENKLSGEIP-NSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS-GRIPKYFENFF 432 (488)
Q Consensus 355 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~l~ 432 (488)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+.++++|+.|++++|.+. +.+|..+..++
T Consensus 392 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 392 -FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp -EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred -ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 8899999999999999986655 57889999999999999999888899999999999999999998 56889999999
Q ss_pred cCceeeccCcccccccC-CccccCCcceeeecCCCCc---------cccccccccCcchhh
Q 041473 433 FLQNLNLSSNHFEGEVP-IKGVFSNSSAISLDGNDNL---------CGGISELHLSTCSIK 483 (488)
Q Consensus 433 ~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~---------c~~~~~l~~~~c~~~ 483 (488)
+|++|++++|++++..| ....+++|+.|++++|... +..++.|++++|++.
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 99999999999997755 5678899999999999654 566788999998764
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.8e-44 Score=353.77 Aligned_cols=447 Identities=21% Similarity=0.226 Sum_probs=285.4
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccccc
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEI 80 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 80 (488)
+|++.+ +|..+. ++|++|++++|.+++..+.+|.++++|++|++++|.+....|..|..+++|++|++++|.++ .+
T Consensus 9 ~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 84 (520)
T 2z7x_B 9 KNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KI 84 (520)
T ss_dssp TSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EE
T ss_pred CCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ec
Confidence 355663 555554 78888888888887666677888888888888888887777778888888888888888887 45
Q ss_pred chhhhccCCCcEEecccCCcCC-CCCcchhccCCCCcEEEcCCCcccccCCccccCCCCC--ceeecccCCC--ccCCCC
Q 041473 81 PFSIYNLSSLSLLDFPVNQLQG-SLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNL--MRLTIQKNGF--SGKVPS 155 (488)
Q Consensus 81 ~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~ 155 (488)
|.. .+++|++|++++|.+.+ .+|..+. .+++|++|++++|++.. ..+..+++| ++|++++|.+ ....+.
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~ 158 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPE 158 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCGGGG-GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred Ccc--ccCCccEEeccCCccccccchhhhc-cCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccc
Confidence 555 67888888888888873 3455555 68888888888887764 345556666 8888888776 333222
Q ss_pred -ccccc-ccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCc-------ccccCchhhhhhhccccEEEccccc
Q 041473 156 -LENLY-KLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINN-------FGGMLPESVGNLSTRLKRFTVGNNQ 226 (488)
Q Consensus 156 -~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~ 226 (488)
+..+. ....+++..+.+... .....+..++.|+.++++.+. +.+.++ .+... ++++.+++.++.
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l-~~L~~L~l~~~~ 231 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHF-----ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTN-PKLSNLTLNNIE 231 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCC-----CCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGC-TTCCEEEEEEEE
T ss_pred cccccccceEEEEeccCcchhh-----hhhhhhhcccceeeccccccccccccceeecchh-hhccc-cchhhccccccc
Confidence 33322 112233333332211 111223345666666666654 222222 23333 467777777666
Q ss_pred cccccchhc---cCCCCCCEEEccCCcCCCCccccc-----cCCCCccEEEcccccccCCCCccccCC---ccccEEecC
Q 041473 227 LFGNIPSGL---GNLVNLELLDLGDNQFTGRILGSI-----GDLQKLQRLRLKGNKFLGEIPSSVGNL---TLLFTLSFE 295 (488)
Q Consensus 227 ~~~~~~~~l---~~l~~L~~L~L~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~ 295 (488)
+.......+ ...++|++|++++|.+.+..+..+ ..+++|+.+++++|.+ ......+..+ ++|+.|+++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcC
Confidence 543221111 123567777777776665455555 6667777777777766 2221333332 457777777
Q ss_pred CCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccc--cCCccccCCCCccEEEccCCccc
Q 041473 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG--PLPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
+|.+.... ....+++|++|++++|.+.+..|..+..++.+ ++|++++|.+.+ ..|..+..+++|++|++++|.++
T Consensus 311 ~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 311 GTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL-ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC-CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred CCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCC-CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 77665322 12456777777777777776667666666666 777777777764 33456677777888888888777
Q ss_pred CCCcc-ccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-c
Q 041473 374 GEIPN-SLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-K 451 (488)
Q Consensus 374 ~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~ 451 (488)
+.+|. .+..+++|++|++++|.++...+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+. .
T Consensus 388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~ 464 (520)
T 2z7x_B 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIF 464 (520)
T ss_dssp CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHh
Confidence 54554 366777888888888877654444433 67788888888777 5666666777888888888877743222 5
Q ss_pred cccCCcceeeecCCCCcccc
Q 041473 452 GVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 452 ~~~~~L~~l~l~~n~~~c~~ 471 (488)
..+++|+.|++++||+.|++
T Consensus 465 ~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TTCTTCCEEECCSSCBCCCH
T ss_pred ccCCcccEEECcCCCCcccC
Confidence 56777788888888877754
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-43 Score=357.44 Aligned_cols=367 Identities=18% Similarity=0.231 Sum_probs=212.7
Q ss_pred ccccccccchhhhccCCCcEEecccCCcCCC-----------------CCcchh-ccCCCCcEEEcCCCcccccCCcccc
Q 041473 73 ANKLSGEIPFSIYNLSSLSLLDFPVNQLQGS-----------------LPSDIG-FTLPNLEVLNFGNNQFTGPIPASIS 134 (488)
Q Consensus 73 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~ 134 (488)
+|.+++ +|..+.++++|++|++++|.+++. +|..+. ..+++|++|++++|++....|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 456665 788888888888888888888853 777654 2588888888888888778888888
Q ss_pred CCCCCceeecccCC-Ccc-CCC-Ccccc------cccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCccccc
Q 041473 135 NASNLMRLTIQKNG-FSG-KVP-SLENL------YKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGM 205 (488)
Q Consensus 135 ~l~~L~~L~l~~~~-~~~-~~~-~~~~l------~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~ 205 (488)
++++|++|++++|. +.+ ..+ .+..+ ++|+.|++++|.+...+. ...+..++.|+.++++.+.+.+.
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~-----~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV-----ETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC-----HHHHTTCTTCCEEECCSCCCEEE
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc-----hhhhccCCCCCEEeCcCCcCccc
Confidence 88888888888887 665 333 24443 666666666665542110 01334445555555555554444
Q ss_pred CchhhhhhhccccEEEccccccccccchhccCCCC-CCEEEccCCcCCCCccccccCC--CCccEEEcccccccCCCCcc
Q 041473 206 LPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN-LELLDLGDNQFTGRILGSIGDL--QKLQRLRLKGNKFLGEIPSS 282 (488)
Q Consensus 206 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~ 282 (488)
++ .+... ++|++|++++|.++ .+|..+..+++ |++|++++|.+. ..+..+..+ ++|+.|++++|.+.+..|..
T Consensus 346 ip-~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 346 LP-AFGSE-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp CC-CCEEE-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred hh-hhCCC-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 44 33333 35555555555554 34444555555 555555555554 233333332 24555555555554444444
Q ss_pred cc-------CCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCcc
Q 041473 283 VG-------NLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSN 355 (488)
Q Consensus 283 ~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~ 355 (488)
+. .+++|++|++++|.+....+..+..+++|++|++++|.++ .+|........ ..
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~-----------------~~ 483 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN-----------------EN 483 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT-----------------EE
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc-----------------cc
Confidence 43 3445555555555544222222333445555555555444 33332221110 00
Q ss_pred ccCCCCccEEEccCCcccCCCccccc--cCCCCCEEecCCccccccCcccccCCCCCCEEec------cCcccCCccchh
Q 041473 356 FGILKNLGVLDVSENKLSGEIPNSLG--SCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDL------SRNNLSGRIPKY 427 (488)
Q Consensus 356 ~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~n~~~~~~~~~ 427 (488)
+..+++|++|++++|.++ .+|..+. .+++|++|++++|+++. .|..+.++++|+.|++ ++|++.+.+|..
T Consensus 484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence 112236667777777666 5665554 66677777777776664 5666666677777776 445666667777
Q ss_pred hhccccCceeeccCcccccccCCccccCCcceeeecCCCCcccc
Q 041473 428 FENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 428 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
+..+++|++|++++|++ +.+|.. ..++|+.|++++||+.|-.
T Consensus 562 l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 562 ITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred HhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcccc
Confidence 77777777777777777 355543 3367777777777776644
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-42 Score=345.32 Aligned_cols=439 Identities=19% Similarity=0.224 Sum_probs=354.5
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccc-c
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSG-E 79 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~ 79 (488)
+|++.+..|.+|..+++|++|++++|.+++..|.+|.++++|++|++++|.+.. +|.. .+++|++|++++|.++. .
T Consensus 30 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~ 106 (520)
T 2z7x_B 30 QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALP 106 (520)
T ss_dssp SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCC
T ss_pred CCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCcccccc
Confidence 578888889999999999999999999997778999999999999999999984 4444 89999999999999985 4
Q ss_pred cchhhhccCCCcEEecccCCcCCCCCcchhccCCCC--cEEEcCCCcc--cccCCccccCCC-CCceeecccCCCccCCC
Q 041473 80 IPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNL--EVLNFGNNQF--TGPIPASISNAS-NLMRLTIQKNGFSGKVP 154 (488)
Q Consensus 80 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~ 154 (488)
.|..+.++++|++|++++|.+.+ ..+ ..+++| +.|++++|.+ ....|..+..+. +...+++++|.+.+..+
T Consensus 107 ~p~~~~~l~~L~~L~L~~n~l~~---~~~-~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~ 182 (520)
T 2z7x_B 107 ICKEFGNMSQLKFLGLSTTHLEK---SSV-LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182 (520)
T ss_dssp CCGGGGGCTTCCEEEEEESSCCG---GGG-GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCC
T ss_pred chhhhccCCcceEEEecCcccch---hhc-cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhh
Confidence 67899999999999999998873 233 367888 9999999998 666777777665 33456777777765544
Q ss_pred C--cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhh--hhccccEEEccccccccc
Q 041473 155 S--LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGN--LSTRLKRFTVGNNQLFGN 230 (488)
Q Consensus 155 ~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~ 230 (488)
. +..+++|+.++++.|...............+..++.|+.++++.+.+.+.....+.. ..++|++|++++|.+.+.
T Consensus 183 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 262 (520)
T 2z7x_B 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262 (520)
T ss_dssp CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence 3 778999999999987522111111134457788899999999988766543332222 124899999999999877
Q ss_pred cchhc-----cCCCCCCEEEccCCcCCCCccccccCC---CCccEEEcccccccCCCCccccCCccccEEecCCCccCCC
Q 041473 231 IPSGL-----GNLVNLELLDLGDNQFTGRILGSIGDL---QKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGS 302 (488)
Q Consensus 231 ~~~~l-----~~l~~L~~L~L~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 302 (488)
.|..+ ..+++|+.++++++.+ ......+..+ .+|+.|++++|.+.... ....+++|++|++++|.+.+.
T Consensus 263 ~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~ 339 (520)
T 2z7x_B 263 LDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDT 339 (520)
T ss_dssp CCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTT
T ss_pred cccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChh
Confidence 88877 8899999999999988 3332333333 67999999999876332 136889999999999999988
Q ss_pred CCccccCCCCCcEEEccCCcCcc--ccchhhhcccCceeEEEccCCcccccCC-ccccCCCCccEEEccCCcccCCCccc
Q 041473 303 IPSSLGKCKNLILLDLSNNNLTG--TIPTEVIGLSSLSIYLDLSKNQLNGPLP-SNFGILKNLGVLDVSENKLSGEIPNS 379 (488)
Q Consensus 303 ~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~l~~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 379 (488)
.|..+..+++|++|++++|.+.+ .+|..+..++.+ ++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh
Confidence 89999999999999999999985 456677788888 899999999997344 45888999999999999998777766
Q ss_pred cccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccc
Q 041473 380 LGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGV 453 (488)
Q Consensus 380 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 453 (488)
+. ++|+.|++++|+++ ..|..+..+++|++|++++|+++...+..+..+++|++|++++|+++|.++..+.
T Consensus 419 l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 419 LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 53 79999999999999 5666666999999999999999954444589999999999999999998775443
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.4e-43 Score=353.29 Aligned_cols=438 Identities=18% Similarity=0.176 Sum_probs=341.0
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccc-c
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSG-E 79 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~ 79 (488)
+|++.+..|.+|..+++|++|++++|.+++..+.+|.++++|++|++++|.+....+..|+.+++|++|++++|.++. .
T Consensus 35 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 114 (549)
T 2z81_A 35 FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114 (549)
T ss_dssp SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC
T ss_pred CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc
Confidence 578889999999999999999999999997778899999999999999999998888889999999999999999985 3
Q ss_pred cchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCC-ccc
Q 041473 80 IPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LEN 158 (488)
Q Consensus 80 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~ 158 (488)
.+..+.++++|++|++++|...+.+|...+..+++|++|++++|.+....|..+..+++|++|+++++........ +..
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 194 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHS
T ss_pred hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhh
Confidence 4678899999999999999854477765555799999999999999888889999999999999988876543322 345
Q ss_pred ccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhh---hhccccEEEcccccccc------
Q 041473 159 LYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGN---LSTRLKRFTVGNNQLFG------ 229 (488)
Q Consensus 159 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~------ 229 (488)
+++|+.+++++|.+........ ......+.|+.+++.++.+.+..+..+.. ..+.++.+++.+|.+..
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 271 (549)
T 2z81_A 195 LSSVRYLELRDTNLARFQFSPL---PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271 (549)
T ss_dssp TTTBSEEEEESCBCTTCCCCCC---SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC
T ss_pred cccccEEEccCCcccccccccc---chhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccc
Confidence 7889999998888765421111 11123445555665555444332222211 11244444444443321
Q ss_pred ------------------------c-----cchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCC
Q 041473 230 ------------------------N-----IPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIP 280 (488)
Q Consensus 230 ------------------------~-----~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 280 (488)
. .+......++|++|++++|.+.......+..+++|++|++++|.+.+..+
T Consensus 272 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~ 351 (549)
T 2z81_A 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351 (549)
T ss_dssp CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHH
T ss_pred cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccc
Confidence 1 11112335689999999998875444444678999999999999876443
Q ss_pred ---ccccCCccccEEecCCCccCCCCC--ccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCcc
Q 041473 281 ---SSVGNLTLLFTLSFEGNRLEGSIP--SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSN 355 (488)
Q Consensus 281 ---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~ 355 (488)
..++.+++|++|++++|.+.+..+ ..+..+++|++|++++|.++ .+|..+..++.+ ++|++++|.+. .++..
T Consensus 352 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L-~~L~Ls~N~l~-~l~~~ 428 (549)
T 2z81_A 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-RFLNLSSTGIR-VVKTC 428 (549)
T ss_dssp HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC-CEEECTTSCCS-CCCTT
T ss_pred cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc-cEEECCCCCcc-cccch
Confidence 346789999999999999985432 45788999999999999998 788887777777 89999999988 34443
Q ss_pred ccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCc
Q 041473 356 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQ 435 (488)
Q Consensus 356 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 435 (488)
+ .++|++|++++|.+++. + ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|..+..+++|+
T Consensus 429 ~--~~~L~~L~Ls~N~l~~~-~---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 429 I--PQTLEVLDVSNNNLDSF-S---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp S--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred h--cCCceEEECCCCChhhh-c---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 3 26899999999999843 2 46899999999999998 4554 45789999999999999988888999999999
Q ss_pred eeeccCcccccccCCcc
Q 041473 436 NLNLSSNHFEGEVPIKG 452 (488)
Q Consensus 436 ~L~l~~n~~~~~~~~~~ 452 (488)
.|++++|++++.+|..+
T Consensus 501 ~L~l~~N~~~~~~~~~~ 517 (549)
T 2z81_A 501 KIWLHTNPWDCSCPRID 517 (549)
T ss_dssp EEECCSSCBCCCHHHHH
T ss_pred EEEecCCCccCCCccHH
Confidence 99999999999888543
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.5e-43 Score=352.51 Aligned_cols=357 Identities=18% Similarity=0.240 Sum_probs=269.6
Q ss_pred ccccccccchhhcCCCCccEEEeeccccccc-----------------cchhhh--ccCCCcEEecccCCcCCCCCcchh
Q 041473 49 VNQFVGQIPETLSELKRMRSIGFGANKLSGE-----------------IPFSIY--NLSSLSLLDFPVNQLQGSLPSDIG 109 (488)
Q Consensus 49 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~ 109 (488)
+|.+++ +|..++++++|++|++++|.+++. +|..+. ++++|++|++++|.+.+.+|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 356666 788899999999999999999864 888888 999999999999999888997777
Q ss_pred ccCCCCcEEEcCCCc-ccc-cCCccccCC------CCCceeecccCCCccCCC--CcccccccceeeccccccCCCCCCc
Q 041473 110 FTLPNLEVLNFGNNQ-FTG-PIPASISNA------SNLMRLTIQKNGFSGKVP--SLENLYKLQRVSFSLNHLGNGEKDD 179 (488)
Q Consensus 110 ~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~ 179 (488)
.+++|++|++++|+ +++ ..|..+..+ ++|++|++++|.+...+. .+..+++|+.|+++.|.+..
T Consensus 271 -~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g----- 344 (636)
T 4eco_A 271 -ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG----- 344 (636)
T ss_dssp -TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE-----
T ss_pred -cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc-----
Confidence 79999999999998 876 677777665 899999999999985555 58899999999999988762
Q ss_pred hhhhhhhccCCCccEEecCCCcccccCchhhhhhhcc-ccEEEccccccccccchhccCCC--CCCEEEccCCcCCCCcc
Q 041473 180 LEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTR-LKRFTVGNNQLFGNIPSGLGNLV--NLELLDLGDNQFTGRIL 256 (488)
Q Consensus 180 ~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~L~~~~~~~~~~ 256 (488)
... .+..++.|+.++++++.+. .++..+.... + |++|++++|.++ .+|..+..+. +|++|++++|.+.+..+
T Consensus 345 -~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 345 -KLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFT-EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp -ECC-CCEEEEEESEEECCSSEEE-ECCTTSEEEC-TTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred -chh-hhCCCCCCCEEECCCCccc-cccHhhhhhc-ccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 111 5667789999999999887 6777777764 6 999999999998 6777776654 89999999999988777
Q ss_pred cccc-------CCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCc-cccCCC-------CCcEEEccCC
Q 041473 257 GSIG-------DLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPS-SLGKCK-------NLILLDLSNN 321 (488)
Q Consensus 257 ~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~-------~L~~L~l~~~ 321 (488)
..+. .+++|++|++++|.+....+..+..+++|++|++++|.+. .+|. .+.... +|+.|++++|
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC
Confidence 7777 7789999999999998555555677999999999999998 4444 333222 6777777777
Q ss_pred cCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEec------CCcc
Q 041473 322 NLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM------NGNF 395 (488)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l------~~n~ 395 (488)
.++ .+|..+.. ..+++|++|++++|.+++ +|..+..+++|++|++ ++|.
T Consensus 499 ~l~-~lp~~~~~-----------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 499 KLT-KLSDDFRA-----------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp CCC-BCCGGGST-----------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred cCC-ccChhhhh-----------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence 666 55544430 134455555555555553 4545555555555555 3455
Q ss_pred ccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 396 FQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 396 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
+....|..+.++++|++|++++|++. .+|..+. ++|+.|++++|++.+
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred ccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 55566666677777777777777773 5555444 577777777776664
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.2e-41 Score=342.18 Aligned_cols=449 Identities=22% Similarity=0.196 Sum_probs=306.3
Q ss_pred cCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecc
Q 041473 17 KLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFP 96 (488)
Q Consensus 17 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 96 (488)
++++|++++|.|++..+.+|.++++|++|++++|.+..+.+.+|.++++|++|+|++|.++...+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 68899999988886667788889999999999998887778888889999999999988886666778888899999999
Q ss_pred cCCcCCCCCcchhccCCCCcEEEcCCCcccc-cCCccccCCCCCceeecccCCCccCCCC-cccccccc----eeecccc
Q 041473 97 VNQLQGSLPSDIGFTLPNLEVLNFGNNQFTG-PIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQ----RVSFSLN 170 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~----~L~l~~~ 170 (488)
+|.++ .++...+..+++|++|++++|.+.. ..|..+..+++|++|++++|.+....+. +..+.+++ .++++.+
T Consensus 133 ~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 133 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 98888 6776655578889999998888764 3466778888899999888887655433 33333322 3334433
Q ss_pred ccCCCCCCc------------------hhhhhhhccCCCccEEecCCCcc------ccc---------------------
Q 041473 171 HLGNGEKDD------------------LEFVSSLVNASRLEMMEISINNF------GGM--------------------- 205 (488)
Q Consensus 171 ~~~~~~~~~------------------~~~~~~l~~~~~L~~l~l~~~~~------~~~--------------------- 205 (488)
.+....... ......+..+..++...+..... ...
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 332111100 01111222333333332211100 000
Q ss_pred ------CchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCcc-------------------cccc
Q 041473 206 ------LPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRIL-------------------GSIG 260 (488)
Q Consensus 206 ------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-------------------~~l~ 260 (488)
.... ......++.+.+..+.+.... .+.....++.|++.++.+..... ....
T Consensus 292 ~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 292 DYYLDGIIDL-FNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp CSCEEECTTT-TGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred cccccchhhh-hhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 0000 011124444544444433221 23344455555555554432211 1223
Q ss_pred CCCCccEEEcccccccC--CCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccch-hhhcccCc
Q 041473 261 DLQKLQRLRLKGNKFLG--EIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPT-EVIGLSSL 337 (488)
Q Consensus 261 ~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l 337 (488)
.+++|+.+++++|.+.. ..+..+....+|+.+++..+... ..+..+..+++|+.+++..+......+. .+..+..+
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccc
Confidence 45667777777665532 22333445667777777766655 3445566788888888888876544443 34445555
Q ss_pred eeEEEccCCcccccCCccccCCCCccEEEccCCccc-CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEecc
Q 041473 338 SIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS-GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416 (488)
Q Consensus 338 ~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 416 (488)
+.++++.|.+....+..+..++.+++|++++|.+. ...|..|..+++|++|++++|+++...+..|.++++|++|+|+
T Consensus 448 -~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 448 -IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp -CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred -ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 78999999998888888888999999999999754 3567788899999999999999998888999999999999999
Q ss_pred CcccCCccchhhhccccCceeeccCcccccccCC-cccc-CCcceeeecCCCCcccc
Q 041473 417 RNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVF-SNSSAISLDGNDNLCGG 471 (488)
Q Consensus 417 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~-~~L~~l~l~~n~~~c~~ 471 (488)
+|++++..+..|.++++|++|++++|++++..|. ...+ ++|+.|++++|||.|+|
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 9999988888999999999999999999977664 3344 78999999999999987
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-41 Score=349.48 Aligned_cols=443 Identities=19% Similarity=0.229 Sum_probs=252.5
Q ss_pred ccCcEEeccCCCCCCCcCccccCCcccccccc-cccccccccchhh----------------------------------
Q 041473 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSA-AVNQFVGQIPETL---------------------------------- 60 (488)
Q Consensus 16 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l-~~~~~~~~~~~~~---------------------------------- 60 (488)
.+++.|+|+++.+.+.+|..+.++++|++|++ ++|.+.+..+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46777777777777777777777788888887 6665533311110
Q ss_pred -----------------cCCCCccEEEeec--cccccccchhhhccCCCcEEecccCCcCC-----------------CC
Q 041473 61 -----------------SELKRMRSIGFGA--NKLSGEIPFSIYNLSSLSLLDFPVNQLQG-----------------SL 104 (488)
Q Consensus 61 -----------------~~l~~L~~L~l~~--~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~ 104 (488)
.....++.+.+.. |.+++ +|..+.++++|++|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0111222222222 55554 67777777888888888877774 16
Q ss_pred Ccch-hccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCC-Ccc-CCCC-cccc-------cccceeeccccccC
Q 041473 105 PSDI-GFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNG-FSG-KVPS-LENL-------YKLQRVSFSLNHLG 173 (488)
Q Consensus 105 ~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~-~~~l-------~~L~~L~l~~~~~~ 173 (488)
|..+ +..+++|+.|++++|.+....|..+..+++|++|++++|. +.+ ..|. +..+ ++|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 6665 2357778888888777776777777778888888888776 654 2222 3333 37777777777665
Q ss_pred CCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCC-CCEEEccCCcCC
Q 041473 174 NGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN-LELLDLGDNQFT 252 (488)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~ 252 (488)
..+. ...+..++.|+.++++.|.+. .++ .+... ++|+.|++++|.+. .+|..+..+++ |++|++++|.+.
T Consensus 562 ~ip~-----~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 562 EFPA-----SASLQKMVKLGLLDCVHNKVR-HLE-AFGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp BCCC-----HHHHTTCTTCCEEECTTSCCC-BCC-CCCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred ccCC-----hhhhhcCCCCCEEECCCCCcc-cch-hhcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 2110 113445556666666666555 344 33333 46667777776666 55555666666 777777777665
Q ss_pred CCccccccCCC--CccEEEcccccccCCCCcc---cc--CCccccEEecCCCccCCCCCcc-ccCCCCCcEEEccCCcCc
Q 041473 253 GRILGSIGDLQ--KLQRLRLKGNKFLGEIPSS---VG--NLTLLFTLSFEGNRLEGSIPSS-LGKCKNLILLDLSNNNLT 324 (488)
Q Consensus 253 ~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 324 (488)
..+..+..++ +|+.|++++|.+.+..+.. +. .+++|+.|++++|.+. .+|.. +..+++|+.|++++|.+.
T Consensus 633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred -cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 3344444433 3677777777665433321 11 2346666777666666 33333 335666677777766666
Q ss_pred cccchhhhccc--------CceeEEEccCCcccccCCcccc--CCCCccEEEccCCcccCCCccccccCCCCCEEecCC-
Q 041473 325 GTIPTEVIGLS--------SLSIYLDLSKNQLNGPLPSNFG--ILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNG- 393 (488)
Q Consensus 325 ~~~~~~~~~~~--------~l~~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~- 393 (488)
.+|...+... .+ ++|++++|.+. .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++
T Consensus 711 -~ip~~~~~~~~~~l~nl~~L-~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 711 -SIPENSLKPKDGNYKNTYLL-TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp -CCCTTSSSCTTSCCTTGGGC-CEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCC
T ss_pred -ccChHHhccccccccccCCc-cEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCC
Confidence 5554443322 23 56666666655 4444444 55666666666666653 555555666666666644
Q ss_pred -----ccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccC-CccccCCcceeeecCCCC
Q 041473 394 -----NFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP-IKGVFSNSSAISLDGNDN 467 (488)
Q Consensus 394 -----n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~ 467 (488)
|.+....|..+.++++|+.|+|++|++ +.+|..+. ++|+.|++++|++....+ .......+..+.+.+|+
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~- 862 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK- 862 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT-
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC-
Confidence 444445555555566666666666665 34444433 456666666665543211 11112233344444443
Q ss_pred ccccccccccCcchhhh
Q 041473 468 LCGGISELHLSTCSIKE 484 (488)
Q Consensus 468 ~c~~~~~l~~~~c~~~~ 484 (488)
..++.+|+...
T Consensus 863 ------~~~I~gC~~L~ 873 (876)
T 4ecn_A 863 ------TQDIRGCDALG 873 (876)
T ss_dssp ------TSEEESCGGGC
T ss_pred ------ccccCCCCCcc
Confidence 23466776543
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.5e-41 Score=343.86 Aligned_cols=427 Identities=18% Similarity=0.195 Sum_probs=342.0
Q ss_pred CCCccccCcccccCCccCcEEec-cCCCCCCCcCcc--------------------------------------------
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAV-HFNNLSGEIPSS-------------------------------------------- 35 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l-~~~~l~~~~~~~-------------------------------------------- 35 (488)
+|++.|.+|.+|+++++|++|++ ++|.+.+..+..
T Consensus 332 ~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp TTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred cCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 47899999999999999999999 777554321100
Q ss_pred -------ccCCcccccccccc--cccccccchhhcCCCCccEEEeecccccc-----------------ccchhhh--cc
Q 041473 36 -------FGNLSSLEFLSAAV--NQFVGQIPETLSELKRMRSIGFGANKLSG-----------------EIPFSIY--NL 87 (488)
Q Consensus 36 -------~~~l~~L~~L~l~~--~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----------------~~~~~~~--~l 87 (488)
......++.+.+.. |.+.+ +|..|.++++|++|++++|.+++ .+|..+. ++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L 490 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred ccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC
Confidence 01223344444444 67776 78889999999999999999996 3888877 99
Q ss_pred CCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCc-ccc-cCCccccC-------CCCCceeecccCCCccCCC--Cc
Q 041473 88 SSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQ-FTG-PIPASISN-------ASNLMRLTIQKNGFSGKVP--SL 156 (488)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~-------l~~L~~L~l~~~~~~~~~~--~~ 156 (488)
++|++|++++|.+.+.+|..+. .+++|+.|++++|+ +.. ..|..+.. +++|++|++++|.+...+. .+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 9999999999998889997776 79999999999998 775 56665544 4599999999999995555 48
Q ss_pred ccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhcc
Q 041473 157 ENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLG 236 (488)
Q Consensus 157 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 236 (488)
..+++|+.|++++|.+...+ .+..++.|+.++++.|.+. .++..+.....+|++|++++|.+. .+|..+.
T Consensus 570 ~~L~~L~~L~Ls~N~l~~lp--------~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~ 639 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVRHLE--------AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN 639 (876)
T ss_dssp TTCTTCCEEECTTSCCCBCC--------CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred hcCCCCCEEECCCCCcccch--------hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence 99999999999999876322 5678889999999999988 777777777423999999999998 6677776
Q ss_pred CCC--CCCEEEccCCcCCCCcccc---cc--CCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccC
Q 041473 237 NLV--NLELLDLGDNQFTGRILGS---IG--DLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGK 309 (488)
Q Consensus 237 ~l~--~L~~L~L~~~~~~~~~~~~---l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 309 (488)
.++ +|+.|++++|.+.+..+.. +. .+++|+.|++++|.+.......+..+++|+.|++++|.+. .+|..+..
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~ 718 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLK 718 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSS
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhc
Confidence 664 4999999999987544322 22 3458999999999998443344568999999999999998 55544332
Q ss_pred --------CCCCcEEEccCCcCccccchhhh--cccCceeEEEccCCcccccCCccccCCCCccEEEccC------Cccc
Q 041473 310 --------CKNLILLDLSNNNLTGTIPTEVI--GLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSE------NKLS 373 (488)
Q Consensus 310 --------~~~L~~L~l~~~~~~~~~~~~~~--~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~------n~l~ 373 (488)
+++|+.|++++|.++ .+|..+. .++.+ +.|++++|.+.+ +|..+..+++|+.|++++ |.+.
T Consensus 719 ~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 719 PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp CTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred cccccccccCCccEEECCCCCCc-cchHHhhhccCCCc-CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccc
Confidence 238999999999998 8888887 77777 899999999996 788888999999999976 7778
Q ss_pred CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
+.+|..+..+++|++|++++|.+. .+|..+. ++|+.|+|++|++....+..+.....+..+.+.+|+...
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred ccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 899999999999999999999995 5665554 799999999999997777777666677777777776653
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2e-40 Score=332.22 Aligned_cols=437 Identities=19% Similarity=0.180 Sum_probs=222.4
Q ss_pred ccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEec
Q 041473 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDF 95 (488)
Q Consensus 16 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 95 (488)
...++++++++.++ .+|..+. ++|+.|++++|.+....+..|..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 31 ~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 34466777777666 3444332 56777777777776666666777777777777777776555666777777777777
Q ss_pred ccCCcCCCCCcchhccCCCCcEEEcCCCccccc-CCccccCCCCCceeecccCCCccCCCCccccccc--ceeecccccc
Q 041473 96 PVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGP-IPASISNASNLMRLTIQKNGFSGKVPSLENLYKL--QRVSFSLNHL 172 (488)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 172 (488)
++|.++ .+|.. .+++|++|++++|++... .|..+..+++|++|++++|.+.. ..+..+++| +.++++.|.+
T Consensus 108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccc
Confidence 777766 66655 466777777777766632 24566677777777777766653 234444454 6677666655
Q ss_pred --CCCCCCchhhh--------------------hhhccCCCccEEecCCCcccc----cCchhhhhhhccccEEEccccc
Q 041473 173 --GNGEKDDLEFV--------------------SSLVNASRLEMMEISINNFGG----MLPESVGNLSTRLKRFTVGNNQ 226 (488)
Q Consensus 173 --~~~~~~~~~~~--------------------~~l~~~~~L~~l~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~ 226 (488)
.......+... ..+..++.|+.++++.+.... .....+... +.++.+++.++.
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l-~~L~~L~L~~~~ 260 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG-PTLLNVTLQHIE 260 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC-SSCEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc-CcceEEEecCCc
Confidence 22111111000 011122333444443331000 000011111 233333333332
Q ss_pred cccc----cchhccCCCCCCEEEccCCcCCCCccccc-----cCCCCccEEEcccccccCCCC-ccccC---CccccEEe
Q 041473 227 LFGN----IPSGLGNLVNLELLDLGDNQFTGRILGSI-----GDLQKLQRLRLKGNKFLGEIP-SSVGN---LTLLFTLS 293 (488)
Q Consensus 227 ~~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~-~~~~~---~~~L~~L~ 293 (488)
+... .+.. ...++|++|++++|.+.+..+..+ ..+++|+.+++..+.+ ..| ..+.. ..+|++|+
T Consensus 261 l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 261 TTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp ECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEE
T ss_pred CcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEE
Confidence 2211 0011 112245555555554443333222 2233333333333322 111 11111 13455555
Q ss_pred cCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCccccc--CCccccCCCCccEEEccCCc
Q 041473 294 FEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGP--LPSNFGILKNLGVLDVSENK 371 (488)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~ 371 (488)
+++|.+.... ....+++|++|++++|.+.+..|..+..++.+ ++|++++|.+.+. .|..+..+++|++|++++|.
T Consensus 338 l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 338 ISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL-QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSC-CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred ccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCC-CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 5555543221 11345666666666666665555555555555 5666666666532 23445566666666666666
Q ss_pred ccCCCcc-ccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC
Q 041473 372 LSGEIPN-SLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 372 l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 450 (488)
+++.+|. .+..+++|++|++++|.++...+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+.
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 6643443 355566666666666666543332222 46666666666666 4444444666666666666666632222
Q ss_pred -ccccCCcceeeecCCCCcccc
Q 041473 451 -KGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 451 -~~~~~~L~~l~l~~n~~~c~~ 471 (488)
...+++|+.|++++|||.|++
T Consensus 492 ~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp STTTCTTCCCEECCSCCBCCCH
T ss_pred HHhcCCCCCEEEecCCCcCCCc
Confidence 455666666666666666643
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.2e-40 Score=327.37 Aligned_cols=433 Identities=20% Similarity=0.239 Sum_probs=330.8
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccccc
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEI 80 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 80 (488)
+|++++ +|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+....|.+|..+++|++|++++|.++ .+
T Consensus 40 ~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 115 (562)
T 3a79_B 40 NRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NI 115 (562)
T ss_dssp TSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EE
T ss_pred CCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-cc
Confidence 356665 555443 79999999999999777789999999999999999999888999999999999999999998 56
Q ss_pred chhhhccCCCcEEecccCCcCCCCC--cchhccCCCCcEEEcCCCcccccCCccccCCCCC--ceeecccCCC--ccCCC
Q 041473 81 PFSIYNLSSLSLLDFPVNQLQGSLP--SDIGFTLPNLEVLNFGNNQFTGPIPASISNASNL--MRLTIQKNGF--SGKVP 154 (488)
Q Consensus 81 ~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~ 154 (488)
|.. .+++|++|++++|.+. .++ ..+. .+++|++|++++|++... .+..++++ ++|++++|.+ ....+
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~ 188 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFD-VLPVCKEFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGET 188 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCS-BCCCCGGGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSC
T ss_pred Ccc--ccccCCEEECCCCCcc-ccCchHhhc-ccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCc
Confidence 665 8999999999999998 544 4554 799999999999988743 34445555 9999999887 43332
Q ss_pred C-c--------------------------ccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCc
Q 041473 155 S-L--------------------------ENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLP 207 (488)
Q Consensus 155 ~-~--------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~ 207 (488)
. + ..+++|+.++++.+.... .........+...+.++.+++..+.+.+...
T Consensus 189 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 266 (562)
T 3a79_B 189 ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC--QRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266 (562)
T ss_dssp CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH--HHHHHHHHHHHSCSSCEEEEEEEEEECHHHH
T ss_pred ccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccccc--chHHHHHHHHhccCcceEEEecCCcCcHHHH
Confidence 2 2 245567777776653110 0011344566778888889888776544322
Q ss_pred hhhhh--hhccccEEEccccccccccchhc-----cCCCCCCEEEccCCcCCCCccccccC---CCCccEEEcccccccC
Q 041473 208 ESVGN--LSTRLKRFTVGNNQLFGNIPSGL-----GNLVNLELLDLGDNQFTGRILGSIGD---LQKLQRLRLKGNKFLG 277 (488)
Q Consensus 208 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~L~~~~~~~~~~~~l~~---l~~L~~L~l~~~~~~~ 277 (488)
..+.. ..++|++|++++|.+.+..|..+ ..++.|+.+++..+.+ ......+.. ..+|+.|++++|.+..
T Consensus 267 ~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~ 345 (562)
T 3a79_B 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIH 345 (562)
T ss_dssp HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccc
Confidence 22111 11489999999999987777766 5556666666666555 122122221 2579999999998753
Q ss_pred CCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCcc--ccchhhhcccCceeEEEccCCcccc-cCCc
Q 041473 278 EIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTG--TIPTEVIGLSSLSIYLDLSKNQLNG-PLPS 354 (488)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~l~~~L~l~~~~~~~-~~~~ 354 (488)
.. ....+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..++.+ ++|++++|.+.+ ..+.
T Consensus 346 ~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 346 MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSC
T ss_pred cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChh
Confidence 32 12688999999999999998889999999999999999999984 234556777777 899999999987 4445
Q ss_pred cccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccC
Q 041473 355 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFL 434 (488)
Q Consensus 355 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 434 (488)
.+..+++|++|++++|.+++..|..+. ++|++|++++|+++ ..|..+.++++|++|++++|+++...+..+..+++|
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 499 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL 499 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTC
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCC
Confidence 688899999999999999866666553 79999999999999 455555599999999999999995444448999999
Q ss_pred ceeeccCcccccccCCccc
Q 041473 435 QNLNLSSNHFEGEVPIKGV 453 (488)
Q Consensus 435 ~~L~l~~n~~~~~~~~~~~ 453 (488)
+.|++++|++.|.++..+.
T Consensus 500 ~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 500 QYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp CCEECCSCCBCCCHHHHHH
T ss_pred CEEEecCCCcCCCcchHHH
Confidence 9999999999998886554
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.4e-38 Score=306.95 Aligned_cols=385 Identities=18% Similarity=0.203 Sum_probs=228.6
Q ss_pred EEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccc-ccchhhhccCCCcEEecccC
Q 041473 20 TLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSG-EIPFSIYNLSSLSLLDFPVN 98 (488)
Q Consensus 20 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~ 98 (488)
.++.+++.++ .+|. + .++|++|++++|.+....+..|..+++|++|++++|.+.. ..+..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4555555555 3343 2 2456666666666665556666666666666666665542 22445666666666666666
Q ss_pred CcCCCCCcchhccCCCCcEEEcCCCcccccCCc--cccCCCCCceeecccCCCccCCCC--cccccccceeeccccccCC
Q 041473 99 QLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPA--SISNASNLMRLTIQKNGFSGKVPS--LENLYKLQRVSFSLNHLGN 174 (488)
Q Consensus 99 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~ 174 (488)
.+.+..|..+. .+++|++|++++|++....+. .+..+++|++|++++|.+....+. +..+++|++|++++|.+..
T Consensus 90 ~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 66533333333 566666666666666532222 255666666666666666554433 4555555555555555443
Q ss_pred CCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchh--------ccCCCCCCEEEc
Q 041473 175 GEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSG--------LGNLVNLELLDL 246 (488)
Q Consensus 175 ~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L~L 246 (488)
.....+... ... .++.++++++.+....+.+ +..+++|++|++
T Consensus 169 ~~~~~l~~l----~~~-------------------------~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 219 (455)
T 3v47_A 169 ICEEDLLNF----QGK-------------------------HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219 (455)
T ss_dssp CCTTTSGGG----TTC-------------------------EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEEC
T ss_pred cChhhhhcc----ccc-------------------------cccccccccCcccccchhhccccccccccccceeeeEec
Confidence 221111000 002 3333333333333221111 123345555666
Q ss_pred cCCcCCCCccccccC---CCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCcccc--CCCCCcEEEccCC
Q 041473 247 GDNQFTGRILGSIGD---LQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLG--KCKNLILLDLSNN 321 (488)
Q Consensus 247 ~~~~~~~~~~~~l~~---l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~ 321 (488)
++|.+.+..+..+.. ..+|+.|++++|....... ..+.+....+..+. ..++|+.|++++|
T Consensus 220 s~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp TTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred CCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCc
Confidence 555554333332222 2556666666554331100 00011111111111 2356777777777
Q ss_pred cCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCc
Q 041473 322 NLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP 401 (488)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 401 (488)
.+.+..|..+..++.+ ++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++...+
T Consensus 286 ~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 286 KIFALLKSVFSHFTDL-EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp CCCEECTTTTTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred cccccchhhcccCCCC-CEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence 7766666666666666 677777777776667778888889999999998886667788888999999999998887778
Q ss_pred ccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccc
Q 041473 402 SSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGV 453 (488)
Q Consensus 402 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 453 (488)
..|.++++|++|++++|++++..+..+..+++|++|++++|++++.+|....
T Consensus 365 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred hhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence 8888899999999999998877777788889999999999999988885443
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.7e-37 Score=316.81 Aligned_cols=477 Identities=23% Similarity=0.233 Sum_probs=342.5
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeecccccccc
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEI 80 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 80 (488)
+|++++..+.+|.++++|++|++++|.++++.+++|.++++|++|++++|++....+.+|.++++|++|++++|.++...
T Consensus 61 ~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 61 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred CCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence 58999999999999999999999999999777889999999999999999999888889999999999999999999666
Q ss_pred chhhhccCCCcEEecccCCcCC-CCCcchhccCCCCcEEEcCCCcccccCCccccCCCCC----ceeecccCCCccCCCC
Q 041473 81 PFSIYNLSSLSLLDFPVNQLQG-SLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNL----MRLTIQKNGFSGKVPS 155 (488)
Q Consensus 81 ~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~~ 155 (488)
+..|.++++|++|++++|.+.. ..|..+. .+++|++|++++|++....+..+..+.++ ..++++.+.+....+.
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 141 NFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 219 (635)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred hhhhhcCcccCeeccccCccccCCCchhhc-cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc
Confidence 6779999999999999999973 2344444 79999999999999886666665544332 2455565555433322
Q ss_pred cccccccceeeccccc-------------------------c------CCCCCCch---------------------hhh
Q 041473 156 LENLYKLQRVSFSLNH-------------------------L------GNGEKDDL---------------------EFV 183 (488)
Q Consensus 156 ~~~l~~L~~L~l~~~~-------------------------~------~~~~~~~~---------------------~~~ 183 (488)
......++.+.+..+. . .......+ ...
T Consensus 220 ~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 299 (635)
T 4g8a_A 220 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGII 299 (635)
T ss_dssp TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECT
T ss_pred cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchh
Confidence 2111112222211110 0 00000000 001
Q ss_pred hhhccCCCccEEecCCCcccccCchhh------------------hhhhccccEEEccccccccccchhccCCCCCCEEE
Q 041473 184 SSLVNASRLEMMEISINNFGGMLPESV------------------GNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLD 245 (488)
Q Consensus 184 ~~l~~~~~L~~l~l~~~~~~~~~~~~~------------------~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 245 (488)
..+.....++.+.+..+.+........ ......++.+.+..+..... .....+++|+.++
T Consensus 300 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ 377 (635)
T 4g8a_A 300 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLD 377 (635)
T ss_dssp TTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEE
T ss_pred hhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC--cccccccccccch
Confidence 112222344444444333221110000 00012444455544443321 2234678999999
Q ss_pred ccCCcCCC--CccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCC-CccccCCCCCcEEEccCCc
Q 041473 246 LGDNQFTG--RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSI-PSSLGKCKNLILLDLSNNN 322 (488)
Q Consensus 246 L~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 322 (488)
++.|.+.. ..+..+..+.+|+.+++..+... ..+..+..+++|+.+++..+...... ...+..+++++.++++.|.
T Consensus 378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~ 456 (635)
T 4g8a_A 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456 (635)
T ss_dssp CCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred hhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence 99987753 23344556789999999998776 34456778999999999988766443 3567889999999999999
Q ss_pred CccccchhhhcccCceeEEEccCCcc-cccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCc
Q 041473 323 LTGTIPTEVIGLSSLSIYLDLSKNQL-NGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIP 401 (488)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 401 (488)
+....+..+...+.+ +++++++|.+ ....|..|..+++|++|++++|.+++..|..|.++++|++|++++|+++...+
T Consensus 457 l~~~~~~~~~~~~~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~ 535 (635)
T 4g8a_A 457 TRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535 (635)
T ss_dssp CEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred cccccccccccchhh-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence 987777777777777 8999999975 44578889999999999999999998888999999999999999999998888
Q ss_pred ccccCCCCCCEEeccCcccCCccchhhhcc-ccCceeeccCcccccccCCccccCCcce---eeecCCCCcccc------
Q 041473 402 SSFSSLRGIQNLDLSRNNLSGRIPKYFENF-FFLQNLNLSSNHFEGEVPIKGVFSNSSA---ISLDGNDNLCGG------ 471 (488)
Q Consensus 402 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~---l~l~~n~~~c~~------ 471 (488)
..|.++++|+.|+|++|+++...|..|..+ ++|+.|++++|++.|.|...+...-++. .........|.+
T Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g 615 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 615 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTT
T ss_pred hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCC
Confidence 999999999999999999999999999888 5899999999999999886554332321 112223356765
Q ss_pred --ccccccCcchhh
Q 041473 472 --ISELHLSTCSIK 483 (488)
Q Consensus 472 --~~~l~~~~c~~~ 483 (488)
+.++|+ .|+++
T Consensus 616 ~~l~~~~~-~C~~~ 628 (635)
T 4g8a_A 616 MPVLSLNI-TCQMT 628 (635)
T ss_dssp CBGGGCCC-CC---
T ss_pred CEeeeecc-CCCCC
Confidence 556777 48875
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-37 Score=304.32 Aligned_cols=376 Identities=22% Similarity=0.200 Sum_probs=249.6
Q ss_pred cccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCC
Q 041473 44 FLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNN 123 (488)
Q Consensus 44 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (488)
.++.+++.+. .+|. +. ++|++|++++|.++...+..+.++++|++|++++|.+.+.++...+..+++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 3455555554 3343 22 678888888888887778888888888888888887765665555557888888888888
Q ss_pred cccccCCccccCCCCCceeecccCCCccCCC---CcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCC
Q 041473 124 QFTGPIPASISNASNLMRLTIQKNGFSGKVP---SLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISIN 200 (488)
Q Consensus 124 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~ 200 (488)
++....|..+..+++|++|++++|.+.+..+ .+..+++|++|++++|
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n------------------------------ 139 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN------------------------------ 139 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS------------------------------
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC------------------------------
Confidence 8876667778888888888888877653211 1333333333333333
Q ss_pred cccccCchh-hhhhhccccEEEccccccccccchhccCC--CCCCEEEccCCcCCCCccccccCCCCccEEEcccccccC
Q 041473 201 NFGGMLPES-VGNLSTRLKRFTVGNNQLFGNIPSGLGNL--VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLG 277 (488)
Q Consensus 201 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 277 (488)
.+.+..+.. +... ++|++|++++|.+....+..+..+ .+++.|+++++.+.......+..
T Consensus 140 ~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------------- 202 (455)
T 3v47_A 140 NIKKIQPASFFLNM-RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW---------------- 202 (455)
T ss_dssp BCCSCCCCGGGGGC-TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------
T ss_pred ccCccCcccccCCC-CcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc----------------
Confidence 222222222 1122 345555555555444444444333 34455555555444322211100
Q ss_pred CCCccccCCccccEEecCCCccCCCCCccccC---CCCCcEEEccCCcCcc----------ccchhhhc--ccCceeEEE
Q 041473 278 EIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGK---CKNLILLDLSNNNLTG----------TIPTEVIG--LSSLSIYLD 342 (488)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~----------~~~~~~~~--~~~l~~~L~ 342 (488)
.....+..+++|++|++++|.+.+..+..+.. .++|+.|++++|...+ ..+..+.. ...+ ++++
T Consensus 203 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~L~ 281 (455)
T 3v47_A 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV-KTCD 281 (455)
T ss_dssp HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCC-CEEE
T ss_pred cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCc-eEEE
Confidence 00000113344555555555444333332222 1445555555443221 11112222 2344 8999
Q ss_pred ccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCC
Q 041473 343 LSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG 422 (488)
Q Consensus 343 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 422 (488)
+++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.++...+..|.++++|++|++++|.+++
T Consensus 282 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred ecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence 99999998889999999999999999999997778899999999999999999998888999999999999999999998
Q ss_pred ccchhhhccccCceeeccCcccccccCC-ccccCCcceeeecCCCCcccc
Q 041473 423 RIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 423 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~c~~ 471 (488)
..|..|..+++|++|++++|++++..+. ...+++|+.|++++||+.|++
T Consensus 362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 8899999999999999999999865443 467899999999999999876
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.9e-36 Score=293.55 Aligned_cols=256 Identities=20% Similarity=0.224 Sum_probs=206.5
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecC
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE 295 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 295 (488)
+|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 55555555555555555667777778888888777776666677777888888888887775555567778888888888
Q ss_pred CCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCC
Q 041473 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375 (488)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 375 (488)
+|.+.+..+..+..+++|+.|++++|...+.++........+ ++|++++|.+....+..+..+++|++|++++|.++..
T Consensus 185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263 (477)
T ss_dssp SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC-SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred CCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc-cEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc
Confidence 888776666677888888888888887766677666655555 7888888888855556788889999999999999877
Q ss_pred CccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccC
Q 041473 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFS 455 (488)
Q Consensus 376 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 455 (488)
.+..|..+++|++|++++|++....+..|.++++|+.|++++|.++...+..|..+++|++|++++|++.+.++..+.+.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~ 343 (477)
T 2id5_A 264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFR 343 (477)
T ss_dssp CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHT
T ss_pred ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHh
Confidence 77788899999999999999998888999999999999999999998888888999999999999999999888878777
Q ss_pred CcceeeecCCCCccccc
Q 041473 456 NSSAISLDGNDNLCGGI 472 (488)
Q Consensus 456 ~L~~l~l~~n~~~c~~~ 472 (488)
....+.+.++...|.+-
T Consensus 344 ~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 344 RRWRLNFNRQQPTCATP 360 (477)
T ss_dssp TTTSSCCTTCCCBEEES
T ss_pred hhhccccCccCceeCCc
Confidence 77778888898999763
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.3e-35 Score=283.06 Aligned_cols=394 Identities=25% Similarity=0.316 Sum_probs=246.4
Q ss_pred CCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCc-------------cEEEeecccccccc
Q 041473 14 SLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRM-------------RSIGFGANKLSGEI 80 (488)
Q Consensus 14 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~l~~~~ 80 (488)
...+|+++++++|.+ +.+|.++.++++|++|++++|.+.+..|..++.+++| ++|++++|.++ .+
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CC
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cC
Confidence 358899999999999 4889999999999999999999988889988888775 89999999887 34
Q ss_pred chhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCccccc
Q 041473 81 PFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLY 160 (488)
Q Consensus 81 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~ 160 (488)
|.. .++|++|++++|.++ .+|.. .++|+.|++++|++.. .+.. .++|++|++++|.+.. .+.+..++
T Consensus 87 p~~---~~~L~~L~l~~n~l~-~lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~~~~l~ 153 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPELQNSS 153 (454)
T ss_dssp CSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCCCTTCT
T ss_pred CCC---cCCCCEEEccCCcCC-ccccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-CcccCCCC
Confidence 442 368999999999988 57753 4789999999998873 3321 2689999999998886 44688899
Q ss_pred ccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCC
Q 041473 161 KLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVN 240 (488)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 240 (488)
+|+++++++|.+...+. ....|+.++++++.+.+ ++ .+... ++|++|++++|.++. .|.. .++
T Consensus 154 ~L~~L~l~~N~l~~lp~----------~~~~L~~L~L~~n~l~~-l~-~~~~l-~~L~~L~l~~N~l~~-l~~~---~~~ 216 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPD----------LPPSLEFIAAGNNQLEE-LP-ELQNL-PFLTAIYADNNSLKK-LPDL---PLS 216 (454)
T ss_dssp TCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSS-CC-CCTTC-TTCCEEECCSSCCSS-CCCC---CTT
T ss_pred CCCEEECCCCcCcccCC----------CcccccEEECcCCcCCc-Cc-cccCC-CCCCEEECCCCcCCc-CCCC---cCc
Confidence 99999999888765332 12478888888887765 33 34444 588888888888774 3322 257
Q ss_pred CCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccC
Q 041473 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSN 320 (488)
Q Consensus 241 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 320 (488)
|++|++++|.+.. .+ .+..+++|++|++++|.+.. .+. .+++|++|++++|.+.+ +|.. .++|++|++++
T Consensus 217 L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~ 286 (454)
T 1jl5_A 217 LESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSE 286 (454)
T ss_dssp CCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred ccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcC
Confidence 8888888888773 33 37788888888888888764 332 24788888888888874 4432 36788888888
Q ss_pred CcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccC
Q 041473 321 NNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400 (488)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 400 (488)
|.+++ ++. .+..+++|++++|.+.+ ++. ..++|++|++++|.++ .+|.. +++|++|++++|.++. .
T Consensus 287 N~l~~-l~~----~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~l~~-l 352 (454)
T 1jl5_A 287 NIFSG-LSE----LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLAE-V 352 (454)
T ss_dssp SCCSE-ESC----CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-C
T ss_pred CccCc-ccC----cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCccc-ccccc---CCcCCEEECCCCcccc-c
Confidence 88773 332 11233788888888874 221 1257888888888888 45543 5788888888888874 4
Q ss_pred cccccCCCCCCEEeccCcccCC--ccchhhhcc-------------ccCceeeccCcccccccCCccccCCcceeeecCC
Q 041473 401 PSSFSSLRGIQNLDLSRNNLSG--RIPKYFENF-------------FFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGN 465 (488)
Q Consensus 401 ~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l-------------~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 465 (488)
|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++. | ..+.+++.|.+.+|
T Consensus 353 p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~-~--~iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 353 PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF-P--DIPESVEDLRMNSE 426 (454)
T ss_dssp CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------------
T ss_pred cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc-c--cchhhHhheeCcCc
Confidence 44 46888889998888887 577777766 6777778877777751 1 12255666777666
Q ss_pred CCcc
Q 041473 466 DNLC 469 (488)
Q Consensus 466 ~~~c 469 (488)
...|
T Consensus 427 ~~~~ 430 (454)
T 1jl5_A 427 RVVD 430 (454)
T ss_dssp ----
T ss_pred ccCC
Confidence 5544
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2e-34 Score=281.76 Aligned_cols=345 Identities=29% Similarity=0.396 Sum_probs=164.1
Q ss_pred CcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEE
Q 041473 39 LSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVL 118 (488)
Q Consensus 39 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 118 (488)
+++++.|+++++.+.. ++ .+..+++|++|++++|.++.. +. +.++++|++|++++|.+. .++. + ..+++|++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~-~-~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DITP-L-ANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccc-cChh-h-cCCCCCCEE
Confidence 3445555555554432 22 244455555555555555422 22 455555555555555554 3332 2 245555555
Q ss_pred EcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecC
Q 041473 119 NFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEIS 198 (488)
Q Consensus 119 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~ 198 (488)
++++|.+... +. +..+++|++|++++|.+... +.+..+++|+.+++.. .+.. ...+..++.|+.++++
T Consensus 118 ~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~-~~~~--------~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 118 TLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGN-QVTD--------LKPLANLTTLERLDIS 185 (466)
T ss_dssp ECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEEEE-SCCC--------CGGGTTCTTCCEEECC
T ss_pred ECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-hhhccCCcccEeecCC-cccC--------chhhccCCCCCEEECc
Confidence 5555554422 21 45555555555555544432 2244555555555531 1110 1113344444444444
Q ss_pred CCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCC
Q 041473 199 INNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGE 278 (488)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 278 (488)
++.+.+. ..+... ++|++|++++|.+....+ ++.+++|++|++++|.+... ..+..+++|+.|++++|.+.+.
T Consensus 186 ~n~l~~~--~~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 186 SNKVSDI--SVLAKL-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp SSCCCCC--GGGGGC-TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCcCCCC--hhhccC-CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc
Confidence 4433321 112222 345555555555443322 44455555555555554432 2344455555555555554432
Q ss_pred CCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccC
Q 041473 279 IPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGI 358 (488)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~ 358 (488)
.+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+ .+..+ +..
T Consensus 259 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l-------------------------~~~~~--~~~ 307 (466)
T 1o6v_A 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL-------------------------EDISP--ISN 307 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCC-------------------------SCCGG--GGG
T ss_pred hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcc-------------------------cCchh--hcC
Confidence 22 4445555555555554443222 44444555555555544 42222 444
Q ss_pred CCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceee
Q 041473 359 LKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLN 438 (488)
Q Consensus 359 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 438 (488)
+++|++|++++|.+++..| +..+++|++|++++|.+.+. ..+.++++|+.|++++|++++..| +..+++|+.|+
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 381 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEE
T ss_pred CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEe
Confidence 5556666666665553333 44556666666666655532 345555666666666666654444 55556666666
Q ss_pred ccCccccc
Q 041473 439 LSSNHFEG 446 (488)
Q Consensus 439 l~~n~~~~ 446 (488)
+++|++++
T Consensus 382 l~~n~~~~ 389 (466)
T 1o6v_A 382 LNDQAWTN 389 (466)
T ss_dssp CCCEEEEC
T ss_pred ccCCcccC
Confidence 66666554
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=281.17 Aligned_cols=346 Identities=21% Similarity=0.208 Sum_probs=218.8
Q ss_pred CcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEeccc
Q 041473 18 LRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPV 97 (488)
Q Consensus 18 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 97 (488)
-+.++.+++.++ .+|..+. ++++.|++++|.+....+..|..+++|++|++++|.++...|..|.++++|++|++++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 357777777777 5565443 5788999999998877788888999999999999988877788888889999999999
Q ss_pred CCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCC-cccccccceeeccccccCCCC
Q 041473 98 NQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGE 176 (488)
Q Consensus 98 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~ 176 (488)
|.+. .+|...+..+++|++|++++|++....+..+..+++|++|++++|.+....+. +..+
T Consensus 90 n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----------------- 151 (477)
T 2id5_A 90 NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL----------------- 151 (477)
T ss_dssp SCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTC-----------------
T ss_pred CcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCC-----------------
Confidence 8888 77766655788888888888888766666777777777777776654332211 1111
Q ss_pred CCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCcc
Q 041473 177 KDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRIL 256 (488)
Q Consensus 177 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 256 (488)
++|++|++++|.++...+..+..+++|+.|++++|.+.....
T Consensus 152 --------------------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 152 --------------------------------------NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp --------------------------------------TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred --------------------------------------CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 244444444444444444445566666666666666655444
Q ss_pred ccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccC
Q 041473 257 GSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSS 336 (488)
Q Consensus 257 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 336 (488)
..+..+++|+.|++++|...+..+.. .....+|++|++++|.++...+..+..++.
T Consensus 194 ~~~~~l~~L~~L~l~~~~~~~~~~~~------------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHWPYLDTMTPN------------------------CLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp TCSCSCTTCCEEEEECCTTCCEECTT------------------------TTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hhcccCcccceeeCCCCccccccCcc------------------------cccCccccEEECcCCcccccCHHHhcCccc
Confidence 45555566666666655443333332 223334555555555554222223333444
Q ss_pred ceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEecc
Q 041473 337 LSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLS 416 (488)
Q Consensus 337 l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 416 (488)
+ ++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.++...+..|..+++|+.|+++
T Consensus 250 L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 250 L-RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp C-CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred c-CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 4 555555555554555556666777777777777776666667777777777777777776666667777777777777
Q ss_pred CcccCCccc-hhhhccccCceeeccCcccccccC
Q 041473 417 RNNLSGRIP-KYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 417 ~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
+|++..... .++ ......+.+.++...+..|
T Consensus 329 ~N~l~c~c~~~~~--~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 329 SNPLACDCRLLWV--FRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp SSCEECSGGGHHH--HTTTTSSCCTTCCCBEEES
T ss_pred CCCccCccchHhH--HhhhhccccCccCceeCCc
Confidence 777663321 222 2233444555555555444
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.7e-34 Score=277.21 Aligned_cols=348 Identities=27% Similarity=0.373 Sum_probs=268.4
Q ss_pred cCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCc
Q 041473 61 SELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLM 140 (488)
Q Consensus 61 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 140 (488)
..+++++.|+++++.+. .++ .+..+++|++|++++|.+. .++. + ..+++|++|++++|.+... +. +..+++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADI-TP-LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCC-GG-GTTCTTCC
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccC-Cchh-h-hccccCCEEECCCCccccC-hh-hcCCCCCC
Confidence 34678899999998887 455 4778899999999999888 6665 3 4789999999999988743 33 88889999
Q ss_pred eeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEE
Q 041473 141 RLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRF 220 (488)
Q Consensus 141 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L 220 (488)
+|++++|.+....+ +..+++|++|++++|.+... ..+..++ +|+++
T Consensus 116 ~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--------~~~~~l~-------------------------~L~~L 161 (466)
T 1o6v_A 116 GLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDI--------SALSGLT-------------------------SLQQL 161 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCC--------GGGTTCT-------------------------TCSEE
T ss_pred EEECCCCCCCCChH-HcCCCCCCEEECCCCccCCC--------hhhccCC-------------------------cccEe
Confidence 99999888776543 77778888888887766532 1133333 55555
Q ss_pred EccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccC
Q 041473 221 TVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLE 300 (488)
Q Consensus 221 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 300 (488)
.+.+ .+.... .+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+.
T Consensus 162 ~l~~-~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 162 SFGN-QVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp EEEE-SCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ecCC-cccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 5542 222221 267778888888888877643 346677888888888887765443 667888888888888877
Q ss_pred CCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCcccc
Q 041473 301 GSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSL 380 (488)
Q Consensus 301 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 380 (488)
+. ..+..+++|+.|++++|.+.+..+ +..++.+ ++|++++|.+.+..+ +..+++|++|++++|.+++..+ +
T Consensus 235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L-~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~ 305 (466)
T 1o6v_A 235 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKL-TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I 305 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC-SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--G
T ss_pred cc--hhhhcCCCCCEEECCCCccccchh--hhcCCCC-CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--h
Confidence 43 457778888899998888874433 5566666 888999988875444 7788999999999999985433 7
Q ss_pred ccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCccee
Q 041473 381 GSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAI 460 (488)
Q Consensus 381 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l 460 (488)
..+++|++|++++|.+.+..+ +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| ...+++|+.|
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 380 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQL 380 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEE
T ss_pred cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEE
Confidence 889999999999999986554 78899999999999999865 478899999999999999997776 8889999999
Q ss_pred eecCCCCccc
Q 041473 461 SLDGNDNLCG 470 (488)
Q Consensus 461 ~l~~n~~~c~ 470 (488)
++++|++...
T Consensus 381 ~l~~n~~~~~ 390 (466)
T 1o6v_A 381 GLNDQAWTNA 390 (466)
T ss_dssp ECCCEEEECC
T ss_pred eccCCcccCC
Confidence 9999998873
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.3e-34 Score=277.49 Aligned_cols=384 Identities=24% Similarity=0.270 Sum_probs=267.9
Q ss_pred CCCccccCcccccCCccCcEEeccCCCCCCCcCccccCCccc-------------ccccccccccccccchhhcCCCCcc
Q 041473 1 FNELVGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSL-------------EFLSAAVNQFVGQIPETLSELKRMR 67 (488)
Q Consensus 1 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~~~~~~~~l~~L~ 67 (488)
+|.+ +.+|++++++++|++|++++|.+.+..|..+.++++| ++|+++++.+.+. |. ..++|+
T Consensus 20 ~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~---~~~~L~ 94 (454)
T 1jl5_A 20 SSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE---LPPHLE 94 (454)
T ss_dssp ---------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS---CCTTCS
T ss_pred cCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CC---CcCCCC
Confidence 3667 8999999999999999999999988899999988875 8899999988753 33 237899
Q ss_pred EEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccC
Q 041473 68 SIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKN 147 (488)
Q Consensus 68 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 147 (488)
+|++++|.+++ +|.. +++|++|++++|.+. .++.. .++|++|++++|++.. .| .+..+++|++|++++|
T Consensus 95 ~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 95 SLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp EEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred EEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 99999999985 6643 479999999999998 56542 3699999999999984 66 5999999999999999
Q ss_pred CCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEcccccc
Q 041473 148 GFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQL 227 (488)
Q Consensus 148 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 227 (488)
.+...... .++|++|++++|.+...+ .+..++.|+.++++++.+.+ ++.. .++|++|++++|.+
T Consensus 164 ~l~~lp~~---~~~L~~L~L~~n~l~~l~--------~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 164 SLKKLPDL---PPSLEFIAAGNNQLEELP--------ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNIL 227 (454)
T ss_dssp CCSCCCCC---CTTCCEEECCSSCCSSCC--------CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCC
T ss_pred cCcccCCC---cccccEEECcCCcCCcCc--------cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcC
Confidence 98864432 358999999999887532 36788999999999998764 3322 25899999999998
Q ss_pred ccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccc
Q 041473 228 FGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSL 307 (488)
Q Consensus 228 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 307 (488)
. .+|. ++.+++|++|++++|.+.+.. . .+++|+.|++++|.+.+ .+. .+++|++|++++|.+.+. +. +
T Consensus 228 ~-~lp~-~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~-l~~---~~~~L~~L~ls~N~l~~l-~~-~ 295 (454)
T 1jl5_A 228 E-ELPE-LQNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTD-LPE---LPQSLTFLDVSENIFSGL-SE-L 295 (454)
T ss_dssp S-SCCC-CTTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSEE-SC-C
T ss_pred C-cccc-cCCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCcccc-cCc---ccCcCCEEECcCCccCcc-cC-c
Confidence 8 5554 889999999999999887532 2 24799999999999875 343 248999999999998752 21 1
Q ss_pred cCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCC
Q 041473 308 GKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE 387 (488)
Q Consensus 308 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 387 (488)
.++|+.|++++|.+++ ++ ..+..+++|++++|.+.+ +|.. +++|++|++++|.++ .+|. .+++|+
T Consensus 296 --~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~ 360 (454)
T 1jl5_A 296 --PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLK 360 (454)
T ss_dssp --CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred --CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhcc
Confidence 2689999999999883 33 233334899999999985 4543 589999999999998 6776 478999
Q ss_pred EEecCCccccc--cCcccccCC-------------CCCCEEeccCcccCC--ccchhhhccccCceeeccCcccccccC
Q 041473 388 QLVMNGNFFQG--NIPSSFSSL-------------RGIQNLDLSRNNLSG--RIPKYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 388 ~L~l~~n~l~~--~~~~~~~~l-------------~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
+|++++|.+.. ..|..+..+ ++|+.|++++|++++ .+| ++++.|.+.+|.+.+..+
T Consensus 361 ~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp EEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------------------------
T ss_pred EEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccc
Confidence 99999999987 567777776 899999999999986 444 357778889998876544
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.8e-33 Score=269.00 Aligned_cols=362 Identities=19% Similarity=0.243 Sum_probs=219.4
Q ss_pred cccCcccccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhh
Q 041473 5 VGKVPGKLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSI 84 (488)
Q Consensus 5 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 84 (488)
.+.-+.+++.+++|++|++++|.+++. | .+..+++|++|++++|.+.+. + ++.+++|++|++++|.+++ ++ +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--C
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--c
Confidence 344445666677777777777777743 4 567777777777777777643 2 6677777777777777764 22 6
Q ss_pred hccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccce
Q 041473 85 YNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQR 164 (488)
Q Consensus 85 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 164 (488)
.++++|++|++++|.++ .++ + ..+++|++|++++|++.. . .+..+++|++|++++|...+.. .+..+++|+.
T Consensus 103 ~~l~~L~~L~L~~N~l~-~l~--~-~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~ 174 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLT-KLD--V-SQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTT 174 (457)
T ss_dssp TTCTTCCEEECCSSCCS-CCC--C-TTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCC-eec--C-CCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc-ccccCCcCCE
Confidence 67777777777777776 454 2 256777777777777763 2 2566777777777776443333 3556666777
Q ss_pred eeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEE
Q 041473 165 VSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELL 244 (488)
Q Consensus 165 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 244 (488)
|++++|.+...+ +..++.|+.++++.+.+.+. .+... ++|++|++++|.++. +| ++.+++|++|
T Consensus 175 L~ls~n~l~~l~---------l~~l~~L~~L~l~~N~l~~~---~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L 238 (457)
T 3bz5_A 175 LDCSFNKITELD---------VSQNKLLNRLNCDTNNITKL---DLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYF 238 (457)
T ss_dssp EECCSSCCCCCC---------CTTCTTCCEEECCSSCCSCC---CCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred EECCCCccceec---------cccCCCCCEEECcCCcCCee---ccccC-CCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence 777666654321 33444555555555544332 12222 344444444444443 22 3444444444
Q ss_pred EccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCc
Q 041473 245 DLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLT 324 (488)
Q Consensus 245 ~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 324 (488)
++++|.+.+.. +..+++|+.|+++++ +|+.+++++|...+..| +..+++|+.|++++|...
T Consensus 239 ~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 239 DCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp ECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred EeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence 44444444322 223344444444332 34455555555444443 356778888888888766
Q ss_pred cccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccc
Q 041473 325 GTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSF 404 (488)
Q Consensus 325 ~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 404 (488)
+.+|... ..+ +.++ +..+++|++|++++|.+++ ++ +..+++|+.|++++|++++
T Consensus 300 ~~l~~~~---~~L-~~L~-------------l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~------ 353 (457)
T 3bz5_A 300 YLLDCQA---AGI-TELD-------------LSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD------ 353 (457)
T ss_dssp CEEECTT---CCC-SCCC-------------CTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB------
T ss_pred ceeccCC---Ccc-eEec-------------hhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC------
Confidence 5555322 111 2222 3445788889999998885 33 7788889999999988873
Q ss_pred cCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC
Q 041473 405 SSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 405 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 450 (488)
++.|..|++++|.+.+. ..+..|..+++++|.+++.+|.
T Consensus 354 --l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 354 --FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp --CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred --ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 35666777888877744 3556788888999998888774
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.3e-33 Score=260.51 Aligned_cols=260 Identities=29% Similarity=0.500 Sum_probs=238.3
Q ss_pred ccccEEEcccccccc--ccchhccCCCCCCEEEccC-CcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccE
Q 041473 215 TRLKRFTVGNNQLFG--NIPSGLGNLVNLELLDLGD-NQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFT 291 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 291 (488)
.+++.|+++++.+.+ ..|..+..+++|++|++++ +.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 378999999999987 7888999999999999995 8888778888999999999999999998788888999999999
Q ss_pred EecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCc
Q 041473 292 LSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENK 371 (488)
Q Consensus 292 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 371 (488)
|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..+...+++|++++|.+.+..|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999999899999999999999999999999889999988884449999999999988999998887 9999999999
Q ss_pred ccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCc
Q 041473 372 LSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK 451 (488)
Q Consensus 372 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 451 (488)
+++..|..+..+++|+.|++++|.++...+. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9988899999999999999999999855554 788999999999999999899999999999999999999999999998
Q ss_pred cccCCcceeeecCCCCccccccccccCcc
Q 041473 452 GVFSNSSAISLDGNDNLCGGISELHLSTC 480 (488)
Q Consensus 452 ~~~~~L~~l~l~~n~~~c~~~~~l~~~~c 480 (488)
+.+++|+.+++++||+.|+. +++.|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~----p~~~C 312 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGS----PLPAC 312 (313)
T ss_dssp TTGGGSCGGGTCSSSEEEST----TSSCC
T ss_pred ccccccChHHhcCCCCccCC----CCCCC
Confidence 99999999999999999985 44456
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-32 Score=261.43 Aligned_cols=334 Identities=20% Similarity=0.225 Sum_probs=180.8
Q ss_pred CCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCcee
Q 041473 63 LKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRL 142 (488)
Q Consensus 63 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 142 (488)
+.++++|+++++.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 466777777777766433344566777777777777666 4444333356677777777776665555556666666666
Q ss_pred ecccCCCccCCCC-cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEE
Q 041473 143 TIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFT 221 (488)
Q Consensus 143 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 221 (488)
++++|.+....+. +..++ +|++|+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~-------------------------------------------------------~L~~L~ 147 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTP-------------------------------------------------------KLTTLS 147 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCT-------------------------------------------------------TCCEEE
T ss_pred ECCCCccCcCCHHHhcCCC-------------------------------------------------------CCcEEE
Confidence 6666655433322 22333 344444
Q ss_pred ccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCC
Q 041473 222 VGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG 301 (488)
Q Consensus 222 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 301 (488)
+++|.+....+..+..+++|++|++++|.+.... +..+++|+.|++++|.+.. +...++|++|++++|.+..
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV 219 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCE
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc-----cCCCCcceEEECCCCeeee
Confidence 4444444333444555566666666666554321 3344556666666654431 2233455666666655542
Q ss_pred CCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccc
Q 041473 302 SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLG 381 (488)
Q Consensus 302 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 381 (488)
. +.. ..++|+.|++++|.+++. ..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|.++ .++..+.
T Consensus 220 ~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 292 (390)
T 3o6n_A 220 V-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 292 (390)
T ss_dssp E-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSS
T ss_pred c-ccc--ccccccEEECCCCCCccc--HHHcCCCCc-cEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccC
Confidence 2 211 124566666666655522 233344444 55555555555444555555666666666666665 3444445
Q ss_pred cCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceee
Q 041473 382 SCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAIS 461 (488)
Q Consensus 382 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~ 461 (488)
.+++|++|++++|.+. ..+..+..+++|++|++++|+++.. + +..+++|++|++++|++.+.. ....+..+....
T Consensus 293 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~-~~~~~~~~~~~~ 367 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS-LRALFRNVARPA 367 (390)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH-HHHHTTTCCTTT
T ss_pred CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh-HHHHHHHHHhhc
Confidence 5566666666666655 3344455556666666666666533 2 445556666666666665432 223344455555
Q ss_pred ecCCCCccccc
Q 041473 462 LDGNDNLCGGI 472 (488)
Q Consensus 462 l~~n~~~c~~~ 472 (488)
+.+++..|.+-
T Consensus 368 ~~~~~~~c~~~ 378 (390)
T 3o6n_A 368 VDDADQHCKID 378 (390)
T ss_dssp BCCCCSCCCTT
T ss_pred ccccCceeccc
Confidence 55565555543
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.6e-32 Score=262.73 Aligned_cols=349 Identities=19% Similarity=0.196 Sum_probs=215.5
Q ss_pred CCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCC
Q 041473 26 NNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLP 105 (488)
Q Consensus 26 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 105 (488)
.......+..+.++++|++|++++|.+.+. | .+..+++|++|++++|.+++ ++ +..+++|++|++++|.++ .++
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~-~~~ 101 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLT-NLD 101 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-CCC
T ss_pred cCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCc-eee
Confidence 334434445667777888888888777643 4 57777888888888887774 33 667777888888887777 444
Q ss_pred cchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhh
Q 041473 106 SDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSS 185 (488)
Q Consensus 106 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 185 (488)
+. .+++|++|++++|++.. .+ +..+++|++|++++|.+.+. .+..+++|++++++.|....
T Consensus 102 --~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~----------- 162 (457)
T 3bz5_A 102 --VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKIT----------- 162 (457)
T ss_dssp --CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCC-----------
T ss_pred --cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccc-----------
Confidence 33 57778888887777763 33 66777777777777776653 25566666666666553211
Q ss_pred hccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCc
Q 041473 186 LVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKL 265 (488)
Q Consensus 186 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L 265 (488)
.+ .+... ++|++|++++|.++. .+ ++.+++|++|++++|.+.+. .+..+++|
T Consensus 163 -------------------~~--~~~~l-~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L 214 (457)
T 3bz5_A 163 -------------------KL--DVTPQ-TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQL 214 (457)
T ss_dssp -------------------CC--CCTTC-TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTC
T ss_pred -------------------cc--ccccC-CcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCC
Confidence 11 01111 366666666666654 22 56667777777777777643 25667777
Q ss_pred cEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccC
Q 041473 266 QRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSK 345 (488)
Q Consensus 266 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~ 345 (488)
+.|++++|.+.+ .| +..+++|++|++++|.+.+.. ...+++|+.|+++++.+. .+++++
T Consensus 215 ~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~---------------~L~l~~ 273 (457)
T 3bz5_A 215 TFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLL---------------EIDLTH 273 (457)
T ss_dssp SEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCS---------------CCCCTT
T ss_pred CEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCC---------------EEECCC
Confidence 777777777764 33 667777777777777776543 334566666666665432 344555
Q ss_pred CcccccCCccccCCCCccEEEccCCcccCCCcc--------ccccCCCCCEEecCCccccccCcccccCCCCCCEEeccC
Q 041473 346 NQLNGPLPSNFGILKNLGVLDVSENKLSGEIPN--------SLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSR 417 (488)
Q Consensus 346 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 417 (488)
|.+.+.+| +..+++|+.|++++|...+.+|. .+.++++|++|++++|+++.. .+.++++|+.|++++
T Consensus 274 n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 274 NTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVN 348 (457)
T ss_dssp CTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCS
T ss_pred CccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCC
Confidence 55443333 34556677777777765444332 133445666666666666642 256666666666666
Q ss_pred cccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCC
Q 041473 418 NNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGN 465 (488)
Q Consensus 418 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 465 (488)
|++++ ++.|..|++++|.+.+. +.+..+..+++++|
T Consensus 349 N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 349 AHIQD--------FSSVGKIPALNNNFEAE----GQTITMPKETLTNN 384 (457)
T ss_dssp SCCCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTT
T ss_pred CCCCC--------ccccccccccCCcEEec----ceeeecCccccccC
Confidence 66663 24555566666666554 23455566666666
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.8e-31 Score=251.08 Aligned_cols=194 Identities=24% Similarity=0.325 Sum_probs=95.3
Q ss_pred ccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCc
Q 041473 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLI 314 (488)
Q Consensus 235 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 314 (488)
+..+++|++|+++++.+..... +..+++|+.|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|+
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~ 224 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLN 224 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCC
Confidence 3444445555555544432221 3444455555555554432211 3444455555555544442222 34444555
Q ss_pred EEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCc
Q 041473 315 LLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN 394 (488)
Q Consensus 315 ~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 394 (488)
+|++++|.++ ..+ + +..+++|++|++++|.++. + ..+..+++|++|++++|
T Consensus 225 ~L~l~~n~l~-~~~------------------------~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 225 SLKIGNNKIT-DLS------------------------P--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp EEECCSSCCC-CCG------------------------G--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSS
T ss_pred EEEccCCccC-CCc------------------------c--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCC
Confidence 5555555443 111 1 3344555555555555542 2 23445555566666555
Q ss_pred cccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCC
Q 041473 395 FFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGND 466 (488)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 466 (488)
.+.+. ..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..| ...+++|+.|++++|+
T Consensus 276 ~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 276 QISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred ccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 55532 235555666666666666655555556666666666666666554433 4455555555555554
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.3e-31 Score=249.21 Aligned_cols=212 Identities=23% Similarity=0.339 Sum_probs=143.5
Q ss_pred ccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCc
Q 041473 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLI 314 (488)
Q Consensus 235 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 314 (488)
+..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+ ++|+
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l------------------------~~L~ 180 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANL------------------------TDLY 180 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGC------------------------TTCS
T ss_pred hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccC------------------------CCCC
Confidence 444555555555555333222 224455555555555555442221 3444 4455
Q ss_pred EEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCc
Q 041473 315 LLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN 394 (488)
Q Consensus 315 ~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 394 (488)
+|++++|.+. .++. +..++.+ +++++++|.+.+..+ +..+++|++|++++|.++. .+. +..+++|++|++++|
T Consensus 181 ~L~l~~n~l~-~~~~-~~~l~~L-~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 181 SLSLNYNQIE-DISP-LASLTSL-HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTN 253 (347)
T ss_dssp EEECTTSCCC-CCGG-GGGCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred EEEccCCccc-cccc-ccCCCcc-ceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCC
Confidence 5555555444 2222 3333344 555555555553322 5677899999999999984 443 889999999999999
Q ss_pred cccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-ccccCCcceeeecCCCCc-----
Q 041473 395 FFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVFSNSSAISLDGNDNL----- 468 (488)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~----- 468 (488)
.++.. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+. ...+++|+.|++++|+..
T Consensus 254 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 329 (347)
T 4fmz_A 254 QISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL 329 (347)
T ss_dssp CCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGG
T ss_pred ccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccCh
Confidence 99853 5688999999999999999865 4688999999999999999876543 567899999999999976
Q ss_pred --cccccccccCcchhhh
Q 041473 469 --CGGISELHLSTCSIKE 484 (488)
Q Consensus 469 --c~~~~~l~~~~c~~~~ 484 (488)
+..+++|++++|++++
T Consensus 330 ~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 330 ASLSKMDSADFANQVIKK 347 (347)
T ss_dssp GGCTTCSEESSSCC----
T ss_pred hhhhccceeehhhhcccC
Confidence 5568899999999874
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4e-32 Score=273.34 Aligned_cols=344 Identities=19% Similarity=0.223 Sum_probs=222.1
Q ss_pred CCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCcee
Q 041473 63 LKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRL 142 (488)
Q Consensus 63 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 142 (488)
+.+++.++++++.+....+..+.++++|++|++++|.+. .++...+..+++|+.|++++|.+....+..|..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456677777777666444445566677777777777666 3433333356667777776666665555556666666666
Q ss_pred ecccCCCccCCCC-cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEE
Q 041473 143 TIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFT 221 (488)
Q Consensus 143 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 221 (488)
++++|.+...++. +..++ +|++|+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~-------------------------------------------------------~L~~L~ 153 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTP-------------------------------------------------------KLTTLS 153 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCT-------------------------------------------------------TCCEEE
T ss_pred EeeCCCCCCCCHHHhccCC-------------------------------------------------------CCCEEE
Confidence 6666655433332 22333 455555
Q ss_pred ccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCC
Q 041473 222 VGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEG 301 (488)
Q Consensus 222 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 301 (488)
+++|.+....+..++.+++|++|++++|.+.... +..+++|+.|++++|.+.. +...++|++|++++|.+..
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV 225 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc
Confidence 5555555445555666667777777776665432 3445667777777665441 3344567777777776653
Q ss_pred CCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccc
Q 041473 302 SIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLG 381 (488)
Q Consensus 302 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 381 (488)
.. ..+ .++|+.|++++|.+++ +..+..++.+ ++|++++|.+.+..|..|..+++|++|++++|.++ .+|..+.
T Consensus 226 ~~-~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~ 298 (597)
T 3oja_B 226 VR-GPV--NVELTILKLQHNNLTD--TAWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298 (597)
T ss_dssp EE-CSC--CSCCCEEECCSSCCCC--CGGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSS
T ss_pred cc-ccc--CCCCCEEECCCCCCCC--ChhhccCCCC-CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccc
Confidence 22 222 2567777777777763 2445555655 67777777777667777778888888888888887 4566666
Q ss_pred cCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceee
Q 041473 382 SCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAIS 461 (488)
Q Consensus 382 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~ 461 (488)
.+++|+.|++++|.+. ..|..+..+++|+.|++++|.++... +..+++|+.|++++|++.+.+. ...+..+....
T Consensus 299 ~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~ 373 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPA 373 (597)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTT
T ss_pred cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhc
Confidence 7788888888888887 45666677888888888888887442 5567788888888888886543 33455666666
Q ss_pred ecCCCCccccccccccCcchh
Q 041473 462 LDGNDNLCGGISELHLSTCSI 482 (488)
Q Consensus 462 l~~n~~~c~~~~~l~~~~c~~ 482 (488)
+.+++..|+.-..+...-|+.
T Consensus 374 ~~~~~~~C~~~~~~~~~~cc~ 394 (597)
T 3oja_B 374 VDDADQHCKIDYQLEHGLCCK 394 (597)
T ss_dssp BCCCCCCCCTTCEEETTEEEE
T ss_pred cccccccCCcchhccCCcccc
Confidence 778888888777766666653
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.1e-32 Score=258.79 Aligned_cols=309 Identities=20% Similarity=0.201 Sum_probs=185.0
Q ss_pred CcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEE
Q 041473 39 LSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVL 118 (488)
Q Consensus 39 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 118 (488)
+++++.++++++.+....+..|..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEE
Confidence 466677777777666555555666777777777777766555556667777777777777766 4444433356777777
Q ss_pred EcCCCcccccCCccccCCCCCceeecccCCCccCCCC-cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEec
Q 041473 119 NFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEI 197 (488)
Q Consensus 119 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l 197 (488)
++++|++....+..+..+++|++|++++|.+....+. +..+++|+.|++++|.+...+ +..++.|+.+++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~l~~L~~L~l 193 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLFHANV 193 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---------GGGCTTCSEEEC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---------cccccccceeec
Confidence 7777766633333356677777777777766655443 666677777777666554321 222333444444
Q ss_pred CCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccC
Q 041473 198 SINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLG 277 (488)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 277 (488)
+.+ .+.. +...++|++|++++|.+..... ..+++|+.|++++|.+.+
T Consensus 194 ~~n-------------------------~l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 194 SYN-------------------------LLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTD 240 (390)
T ss_dssp CSS-------------------------CCSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCC
T ss_pred ccc-------------------------cccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCcc
Confidence 433 3321 1222345555555555543211 123456666666665553
Q ss_pred CCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCcccc
Q 041473 278 EIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFG 357 (488)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~ 357 (488)
. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++..+..++.+ ++|++++|++. .+|..+.
T Consensus 241 ~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L-~~L~L~~n~l~-~~~~~~~ 315 (390)
T 3o6n_A 241 T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL-KVLDLSHNHLL-HVERNQP 315 (390)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTC-CEEECCSSCCC-CCGGGHH
T ss_pred c--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCC-CEEECCCCcce-ecCcccc
Confidence 2 34556666666666666666555666666666666666666665 344444445555 66777777666 4445566
Q ss_pred CCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccc
Q 041473 358 ILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG 398 (488)
Q Consensus 358 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 398 (488)
.+++|++|++++|.++ .++ +..+++|++|++++|.+..
T Consensus 316 ~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 316 QFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp HHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEH
T ss_pred ccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCccc
Confidence 6777888888888777 333 5567788888888887764
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=6.8e-31 Score=264.39 Aligned_cols=308 Identities=19% Similarity=0.203 Sum_probs=175.3
Q ss_pred CcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEE
Q 041473 39 LSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVL 118 (488)
Q Consensus 39 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 118 (488)
+.+++.++++++.+....+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEE
Confidence 466777777777777666666777777888888777777666667777777888888877777 5555544467778888
Q ss_pred EcCCCcccccCCccccCCCCCceeecccCCCccCCCC-cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEec
Q 041473 119 NFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPS-LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEI 197 (488)
Q Consensus 119 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l 197 (488)
++++|.+....+..|..+++|++|++++|.+....+. +..+++|+.|++++|.+...+ +..++.|+.+++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------~~~l~~L~~L~l 199 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLFHANV 199 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---------GGGCTTCSEEEC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---------hhhhhhhhhhhc
Confidence 8877777744444467777788888877777766554 677777777777777665321 223344555555
Q ss_pred CCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccC
Q 041473 198 SINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLG 277 (488)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 277 (488)
+++.+.. +...++|++|++++|.+...... ..++|+.|++++|.+.+
T Consensus 200 ~~n~l~~------------------------------l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 200 SYNLLST------------------------------LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD 246 (597)
T ss_dssp CSSCCSE------------------------------EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC
T ss_pred ccCcccc------------------------------ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC
Confidence 5443322 11223344444444443321111 11344455555544432
Q ss_pred CCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCcccc
Q 041473 278 EIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFG 357 (488)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~ 357 (488)
+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++ .+|..+..++.+ ++|++++|.+. .+|..+.
T Consensus 247 --~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L-~~L~Ls~N~l~-~i~~~~~ 321 (597)
T 3oja_B 247 --TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL-KVLDLSHNHLL-HVERNQP 321 (597)
T ss_dssp --CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTC-CEEECCSSCCC-CCGGGHH
T ss_pred --ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCC-cEEECCCCCCC-ccCcccc
Confidence 133444555555555555554444444555555555555555544 233333334444 45555555554 3344445
Q ss_pred CCCCccEEEccCCcccCCCccccccCCCCCEEecCCcccc
Q 041473 358 ILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQ 397 (488)
Q Consensus 358 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 397 (488)
.+++|++|++++|.++. ++ +..+++|+.|++++|.+.
T Consensus 322 ~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp HHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEE
T ss_pred cCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCC
Confidence 55556666666655552 22 334555666666665554
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.4e-34 Score=277.80 Aligned_cols=160 Identities=18% Similarity=0.099 Sum_probs=83.2
Q ss_pred CccccEEecCCCccCCC----CCccccCCCCCcEEEccCCcCccccchhhhcc-----cCceeEEEccCCccccc----C
Q 041473 286 LTLLFTLSFEGNRLEGS----IPSSLGKCKNLILLDLSNNNLTGTIPTEVIGL-----SSLSIYLDLSKNQLNGP----L 352 (488)
Q Consensus 286 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~l~~~L~l~~~~~~~~----~ 352 (488)
+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+... +.+ ++|++++|.+.+. .
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL-ESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC-CEEECTTSCCBGGGHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc-eeeEcCCCCCchHHHHHH
Confidence 34444444444444321 23333344555555555554442222222111 122 5555555555432 2
Q ss_pred CccccCCCCccEEEccCCcccCCCcccccc-----CCCCCEEecCCccccc----cCcccccCCCCCCEEeccCcccCCc
Q 041473 353 PSNFGILKNLGVLDVSENKLSGEIPNSLGS-----CVRLEQLVMNGNFFQG----NIPSSFSSLRGIQNLDLSRNNLSGR 423 (488)
Q Consensus 353 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~ 423 (488)
+..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ ..+..+..+++|++|++++|+++..
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 334455567777777777666443333322 5677777777777764 4455666677777777777777654
Q ss_pred cchhhh-c----cccCceeeccCccccc
Q 041473 424 IPKYFE-N----FFFLQNLNLSSNHFEG 446 (488)
Q Consensus 424 ~~~~l~-~----l~~L~~L~l~~n~~~~ 446 (488)
....+. . ..+|+.|.+.++....
T Consensus 414 ~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 414 GILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHHHHHHhccCCcchhheeecccccCH
Confidence 333332 1 2346666666665543
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.9e-29 Score=233.16 Aligned_cols=199 Identities=20% Similarity=0.283 Sum_probs=117.6
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCCC--CccccccCCCCccEEEcccccccCCCCccccCCccccEEe
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG--RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLS 293 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 293 (488)
+|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.. .+..+ .++|++|+
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~ 198 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELH 198 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEE
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEE
Confidence 56666666666665555566777777777777776642 334445555666666666655542 22211 13444444
Q ss_pred cCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc
Q 041473 294 FEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
+++|.+.+..+..+..+++|+ +|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~-------------------------~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLA-------------------------KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCC-------------------------EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhcCCCCCC-------------------------EEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 444444433333444444444 4444444444444445666677777777777777
Q ss_pred CCCccccccCCCCCEEecCCccccccCcccccC------CCCCCEEeccCcccCC--ccchhhhccccCceeeccCcc
Q 041473 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSS------LRGIQNLDLSRNNLSG--RIPKYFENFFFLQNLNLSSNH 443 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~ 443 (488)
.+|..+..+++|++|++++|.++...+..|.. .+.|+.|++++|++.. ..|..|..+++++.+++++|+
T Consensus 254 -~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred -cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 66666777777777777777777665555543 3677788888887753 456677777778888887774
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.2e-29 Score=232.41 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=93.9
Q ss_pred cCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecc
Q 041473 17 KLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFP 96 (488)
Q Consensus 17 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 96 (488)
++++++++++.++ .+|..+ .++|+.|++++|.+....+..|..+++|++|++++|.++...|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6888888888777 555544 2578888888888876767778888888888888888876667778888888888888
Q ss_pred cCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCc
Q 041473 97 VNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFS 150 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 150 (488)
+|.+. .+|..++ ++|++|++++|++....+..+..+++|++|++++|.+.
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 88877 7776553 67888888877777544455667777777777766553
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.5e-33 Score=270.66 Aligned_cols=379 Identities=16% Similarity=0.108 Sum_probs=262.2
Q ss_pred CCccEEEeeccccccccchh-hhccCCCcEEecccCCcCCC----CCcchhccCCCCcEEEcCCCcccccCCccc-cCCC
Q 041473 64 KRMRSIGFGANKLSGEIPFS-IYNLSSLSLLDFPVNQLQGS----LPSDIGFTLPNLEVLNFGNNQFTGPIPASI-SNAS 137 (488)
Q Consensus 64 ~~L~~L~l~~~~l~~~~~~~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~ 137 (488)
++|++|+++++.++...... +..+++|++|++++|.+.+. ++..+. .+++|++|++++|.+....+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHH-hCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 57899999999887443333 77889999999999987621 233333 57889999999888764333322 2333
Q ss_pred ----CCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhh
Q 041473 138 ----NLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNL 213 (488)
Q Consensus 138 ----~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~ 213 (488)
+|++|++++|.+..... ......+..++.|+.++++++.+.+.....+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~-------------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 136 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGC-------------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG 136 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGH-------------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred hCCCceeEEEccCCCCCHHHH-------------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHH
Confidence 57777777776553210 0223334444555555555555443333322221
Q ss_pred ----hccccEEEcccccccccc----chhccCCCCCCEEEccCCcCCCCcccccc-----CCCCccEEEcccccccCC--
Q 041473 214 ----STRLKRFTVGNNQLFGNI----PSGLGNLVNLELLDLGDNQFTGRILGSIG-----DLQKLQRLRLKGNKFLGE-- 278 (488)
Q Consensus 214 ----~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-- 278 (488)
.++|++|++++|.++... +..+..+++|++|++++|.+.......+. ..++|++|++++|.+.+.
T Consensus 137 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred HhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 236888888888776532 45566778999999998887643333332 256899999999987753
Q ss_pred --CCccccCCccccEEecCCCccCCCC-----CccccCCCCCcEEEccCCcCccc----cchhhhcccCceeEEEccCCc
Q 041473 279 --IPSSVGNLTLLFTLSFEGNRLEGSI-----PSSLGKCKNLILLDLSNNNLTGT----IPTEVIGLSSLSIYLDLSKNQ 347 (488)
Q Consensus 279 --~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~~L~l~~~~ 347 (488)
++..+..+++|++|++++|.+.... +..+..+++|++|++++|.+++. ++..+..++.+ ++|++++|.
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~ 295 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL-KELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC-CEEECTTCC
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc-ceEECCCCC
Confidence 3455667899999999999876432 22333588999999999998843 56666667777 899999999
Q ss_pred ccccCCccccC-----CCCccEEEccCCcccCC----CccccccCCCCCEEecCCccccccCcccccC-----CCCCCEE
Q 041473 348 LNGPLPSNFGI-----LKNLGVLDVSENKLSGE----IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSS-----LRGIQNL 413 (488)
Q Consensus 348 ~~~~~~~~~~~-----l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L 413 (488)
+.+..+..+.. .++|++|++++|.++.. ++..+..+++|++|++++|.+++..+..+.. .++|++|
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence 87544433332 36999999999999854 4566778899999999999998655544432 6799999
Q ss_pred eccCcccCC----ccchhhhccccCceeeccCcccccc-cCC----c-cccCCcceeeecCCCCcc
Q 041473 414 DLSRNNLSG----RIPKYFENFFFLQNLNLSSNHFEGE-VPI----K-GVFSNSSAISLDGNDNLC 469 (488)
Q Consensus 414 ~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~-~~~----~-~~~~~L~~l~l~~n~~~c 469 (488)
++++|.++. .++..+..+++|++|++++|++++. ... . ....+|+.|.+.++.+.+
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 999999986 6788889999999999999998853 111 0 123467888887776654
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=5.7e-30 Score=236.24 Aligned_cols=255 Identities=29% Similarity=0.488 Sum_probs=226.4
Q ss_pred CCccEEecCCCcccc--cCchhhhhhhccccEEEccc-cccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCcc
Q 041473 190 SRLEMMEISINNFGG--MLPESVGNLSTRLKRFTVGN-NQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQ 266 (488)
Q Consensus 190 ~~L~~l~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 266 (488)
.+++.++++++.+.+ .++..+..+ ++|++|++++ +.+....|..++.+++|++|++++|.+.+..+..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 356777777777766 667777766 5899999995 888878888899999999999999999877888899999999
Q ss_pred EEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCC-CCcEEEccCCcCccccchhhhcccCceeEEEccC
Q 041473 267 RLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCK-NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSK 345 (488)
Q Consensus 267 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~ 345 (488)
+|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+.+|..+..+. + ++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-AFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C-SEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c-cEEECcC
Confidence 999999999888888899999999999999999888899999888 999999999999988998888876 4 8999999
Q ss_pred CcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccc
Q 041473 346 NQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIP 425 (488)
Q Consensus 346 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 425 (488)
|.+.+..+..+..+++|++|++++|.+++..+. +..+++|++|++++|.++...|..+..+++|++|++++|++++.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 999988999999999999999999999855554 7889999999999999998899999999999999999999998888
Q ss_pred hhhhccccCceeeccCcccccccC
Q 041473 426 KYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 426 ~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
.. ..+++|+.+++++|+..+..|
T Consensus 286 ~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CC-ccccccChHHhcCCCCccCCC
Confidence 76 889999999999999665433
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9e-29 Score=230.68 Aligned_cols=245 Identities=22% Similarity=0.294 Sum_probs=133.3
Q ss_pred cCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecc
Q 041473 17 KLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFP 96 (488)
Q Consensus 17 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 96 (488)
++++++++++.++ .+|..+. ++|+.|++++|.+....+..|..+++|++|++++|.++...|..+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6777777776666 4444332 467777777777766666567777777777777777765556667777777777777
Q ss_pred cCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCC
Q 041473 97 VNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGE 176 (488)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 176 (488)
+|.++ .+|..++ ++|++|++++|.+....+..+..+++|++|++++|.+....
T Consensus 109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------- 161 (330)
T 1xku_A 109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG----------------------- 161 (330)
T ss_dssp SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG-----------------------
T ss_pred CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC-----------------------
Confidence 77766 5665543 56777777766666444445566666666666655442100
Q ss_pred CCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCcc
Q 041473 177 KDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRIL 256 (488)
Q Consensus 177 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 256 (488)
..+..+... ++|++|++++|.++. .|..+ .++|++|++++|.+....+
T Consensus 162 ----------------------------~~~~~~~~l-~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~ 209 (330)
T 1xku_A 162 ----------------------------IENGAFQGM-KKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDA 209 (330)
T ss_dssp ----------------------------BCTTGGGGC-TTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECT
T ss_pred ----------------------------cChhhccCC-CCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCccCH
Confidence 000011111 233333333333331 11111 1455555555555554444
Q ss_pred ccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCc
Q 041473 257 GSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLT 324 (488)
Q Consensus 257 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 324 (488)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 45555555555555555554444434445555555555555544 34444444555555555555444
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.3e-28 Score=229.75 Aligned_cols=198 Identities=20% Similarity=0.262 Sum_probs=108.9
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCCC--CccccccCCCCccEEEcccccccCCCCccccCCccccEEe
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG--RILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLS 293 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 293 (488)
+|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|.+.. .+..+ .++|++|+
T Consensus 124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~--~~~L~~L~ 199 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL--PETLNELH 199 (332)
T ss_dssp TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS--CSSCSCCB
T ss_pred cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc--cCCCCEEE
Confidence 55555555555554444456666666666666666542 333444444 55555555555543 22222 14555555
Q ss_pred cCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc
Q 041473 294 FEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
+++|.+.+..+..+..+++|+.|++++|.+. +..+..+..+++|++|++++|.++
T Consensus 200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-------------------------MIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-------------------------CCCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCC-------------------------cCChhHhhCCCCCCEEECCCCcCe
Confidence 5555554444444444444544444444443 333334555566666666666666
Q ss_pred CCCccccccCCCCCEEecCCccccccCcccccC------CCCCCEEeccCcccC--CccchhhhccccCceeeccCcc
Q 041473 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSS------LRGIQNLDLSRNNLS--GRIPKYFENFFFLQNLNLSSNH 443 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~ 443 (488)
.+|..+..+++|++|++++|.++...+..|.. .++|+.|++++|++. ...|.+|..+++|+.+++++|+
T Consensus 255 -~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 -RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 55656666666666666666666555555543 255677777777665 4566667777777777777664
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=5.7e-29 Score=226.96 Aligned_cols=250 Identities=22% Similarity=0.220 Sum_probs=197.1
Q ss_pred cEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCC
Q 041473 218 KRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGN 297 (488)
Q Consensus 218 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (488)
+.++.++..++. +|.. ..+++++|+++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 445555555543 2322 2457778888877777666666777778888888887777666667777888888888887
Q ss_pred c-cCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCC
Q 041473 298 R-LEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEI 376 (488)
Q Consensus 298 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 376 (488)
. +....+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|.++...
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC-CEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 6 665556777778888888888888775556666666666 78888888887666667888899999999999998555
Q ss_pred ccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCC
Q 041473 377 PNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSN 456 (488)
Q Consensus 377 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 456 (488)
+..+..+++|++|++++|.+....+..|.++++|+.|++++|.+++..+..+..+++|++|++++|++.+.++..+....
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~ 249 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHH
Confidence 56688899999999999999888888999999999999999999987778899999999999999999988887777788
Q ss_pred cceeeecCCCCcccc
Q 041473 457 SSAISLDGNDNLCGG 471 (488)
Q Consensus 457 L~~l~l~~n~~~c~~ 471 (488)
++.+....+...|..
T Consensus 250 l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSL 264 (285)
T ss_dssp HHHCCSEECCCBEEE
T ss_pred HHhcccccCccccCC
Confidence 888888888888876
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.4e-27 Score=231.40 Aligned_cols=236 Identities=25% Similarity=0.310 Sum_probs=160.7
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
+.++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 46777777777777666667777777777777777777666667777777777777777777555556777777777777
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccch-hhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPT-EVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
++|.+....+..|..+++|++|++++|+..+.++. .+..++.+ ++|++++|.+. .+| .+..+++|++|++++|.++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-RYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-CEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-CeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence 77777755556677777777777777543324333 44455555 67777777666 333 3556667777777777776
Q ss_pred CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccc
Q 041473 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGV 453 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 453 (488)
+..+..|.++++|++|++++|++....+..|.++++|+.|+|++|+++...+..|..+++|+.|++++|++.+.+...+.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l 300 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWL 300 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHH
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHH
Confidence 55566666777777777777777666666677777777777777777766666666677777777777777766654443
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.3e-30 Score=260.40 Aligned_cols=411 Identities=13% Similarity=0.065 Sum_probs=207.1
Q ss_pred ccCcccccCCccCcEEeccCCCCC---CCcCcc------------ccCCcccccccccccccccccchhhcC-CC-CccE
Q 041473 6 GKVPGKLGSLSKLRTLAVHFNNLS---GEIPSS------------FGNLSSLEFLSAAVNQFVGQIPETLSE-LK-RMRS 68 (488)
Q Consensus 6 ~~l~~~l~~~~~L~~L~l~~~~l~---~~~~~~------------~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~-~L~~ 68 (488)
..++..+..+++|++|+++++..- +..|.. +..+++|+.|+++++.+....+..+.. ++ +|++
T Consensus 63 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 63 ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence 344455567778888888764321 111111 125667777777777665444444444 23 3777
Q ss_pred EEeeccc-ccc-ccchhhhccCCCcEEecccCCcCCCCCc---chhccCCCCcEEEcCCCccc----ccCCccccCCCCC
Q 041473 69 IGFGANK-LSG-EIPFSIYNLSSLSLLDFPVNQLQGSLPS---DIGFTLPNLEVLNFGNNQFT----GPIPASISNASNL 139 (488)
Q Consensus 69 L~l~~~~-l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L 139 (488)
|++++|. ++. .++....++++|++|++++|.+.+.-.. .+...+++|++|+++++.+. ...+..+..+++|
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 7777665 221 1223334667777777777766533211 12335677777777766654 1223334456677
Q ss_pred ceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccE
Q 041473 140 MRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKR 219 (488)
Q Consensus 140 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 219 (488)
++|+++++.+......+..+++|+++.++....... .......+..+++ |+.
T Consensus 223 ~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~~~~-------------------------L~~ 274 (592)
T 3ogk_B 223 VSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIG---MPEKYMNLVFPRK-------------------------LCR 274 (592)
T ss_dssp CEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTT---CTTSSSCCCCCTT-------------------------CCE
T ss_pred cEEeccCccHHHHHHHHhhhhHHHhhcccccccccc---hHHHHHHhhcccc-------------------------ccc
Confidence 777777666554433355566666666654221100 0011222333344 444
Q ss_pred EEccccccccccchhccCCCCCCEEEccCCcCCCCcc-ccccCCCCccEEEcccccccCCCCccccCCccccEEecCC--
Q 041473 220 FTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRIL-GSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG-- 296 (488)
Q Consensus 220 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-- 296 (488)
+.+.++.. ...+..+..+++|++|++++|.+..... ..+..+++|++|++.++-.....+.....+++|++|++++
T Consensus 275 L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~ 353 (592)
T 3ogk_B 275 LGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGA 353 (592)
T ss_dssp EEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCC
T ss_pred cCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCc
Confidence 44443321 1233334445555555555554332111 2234455555555552211111112223445555555552
Q ss_pred ---------CccCCC-CCccccCCCCCcEEEccCCcCccccchhhhc-ccCceeEEEcc----CCccccc-----CCccc
Q 041473 297 ---------NRLEGS-IPSSLGKCKNLILLDLSNNNLTGTIPTEVIG-LSSLSIYLDLS----KNQLNGP-----LPSNF 356 (488)
Q Consensus 297 ---------~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~l~~~L~l~----~~~~~~~-----~~~~~ 356 (488)
+.+++. .+.....+++|++|+++.+.+++..+..+.. ++.+ ++|+++ .+.+++. ++..+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L-~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL-CDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp CSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSC-CEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred cccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCC-cEEEEeecCCCccccCchHHHHHHHHH
Confidence 222211 1111233556666666555555444444433 3333 556654 3334321 11224
Q ss_pred cCCCCccEEEccCCc--ccCCCccccc-cCCCCCEEecCCcccccc-CcccccCCCCCCEEeccCcccCCc-cchhhhcc
Q 041473 357 GILKNLGVLDVSENK--LSGEIPNSLG-SCVRLEQLVMNGNFFQGN-IPSSFSSLRGIQNLDLSRNNLSGR-IPKYFENF 431 (488)
Q Consensus 357 ~~l~~L~~L~l~~n~--l~~~~~~~~~-~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l 431 (488)
..+++|++|++++|. +++..+..+. .+++|++|++++|.+++. .+..+.++++|++|+|++|+++.. ++..+..+
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l 512 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence 456777777776543 4433333332 367777777777777642 334456677777777777776544 33344567
Q ss_pred ccCceeeccCccccc
Q 041473 432 FFLQNLNLSSNHFEG 446 (488)
Q Consensus 432 ~~L~~L~l~~n~~~~ 446 (488)
++|++|++++|+++.
T Consensus 513 ~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 513 PSLRYLWVQGYRASM 527 (592)
T ss_dssp SSCCEEEEESCBCCT
T ss_pred CccCeeECcCCcCCH
Confidence 777777777777664
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.7e-27 Score=230.28 Aligned_cols=236 Identities=23% Similarity=0.279 Sum_probs=162.5
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
+++++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 46777777777777666677777777777777777777666667777777777777777777555556777777777777
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccch-hhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPT-EVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
++|.+....+..+..+++|+.|++++|+..+.++. .+..++.+ ++|++++|.+.+. | .+..+++|++|++++|.++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL-KYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC-CEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC-CEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 77777755555677777777777777543334443 34455555 6777777776632 3 3556667777777777776
Q ss_pred CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccc
Q 041473 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGV 453 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 453 (488)
+..|..|.++++|++|++++|.+....+..|.++++|+.|+|++|+++...+..|..+++|+.|++++|++.+.+...+.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l 311 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWL 311 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHH
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHH
Confidence 66666677777777777777777666666677777777777777777766666666677777777777777766664443
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=8.4e-28 Score=221.68 Aligned_cols=257 Identities=25% Similarity=0.266 Sum_probs=202.1
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCc--cccccCCCCccEEEcccccccCCCCccccCCccccEE
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRI--LGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTL 292 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 292 (488)
+++++|+++++.++...+..+..+++|++|++++|.+.... +..+..+++|++|++++|.+. ..+..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 47888888888887555555788888999999888776332 345556788899999888877 445567788889999
Q ss_pred ecCCCccCCCCC-ccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccc-cCCccccCCCCccEEEccCC
Q 041473 293 SFEGNRLEGSIP-SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG-PLPSNFGILKNLGVLDVSEN 370 (488)
Q Consensus 293 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n 370 (488)
++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+.+ ..|..+..+++|++|++++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 998888875544 567788889999999888886677777777777 888888888875 46778888889999999999
Q ss_pred cccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccc-cCceeeccCcccccccC
Q 041473 371 KLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFF-FLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 371 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~ 449 (488)
.+++..|..+..+++|++|++++|.++...+..+..+++|+.|++++|++++..+..+..++ +|++|++++|++++.++
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 88866678888889999999999988877777788889999999999999888888888885 89999999999988766
Q ss_pred Cccc---cCCcceeeecCCCCcccccc
Q 041473 450 IKGV---FSNSSAISLDGNDNLCGGIS 473 (488)
Q Consensus 450 ~~~~---~~~L~~l~l~~n~~~c~~~~ 473 (488)
..+. +...+.+.+..+...|..-+
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 266 HQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp GHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred hHHHHHHHHhhhhhhccccccccCCch
Confidence 4333 44555666677777776543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.9e-27 Score=219.28 Aligned_cols=250 Identities=24% Similarity=0.269 Sum_probs=213.4
Q ss_pred ccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCC--CccccCCccccEEec
Q 041473 217 LKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEI--PSSVGNLTLLFTLSF 294 (488)
Q Consensus 217 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l 294 (488)
.+.++..++.++. +|..+ .+++++|+++++.+.......|..+++|++|++++|.+.... +..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 4567777776663 34333 368999999999998777777899999999999999876332 455667999999999
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccc-hhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIP-TEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
++|.+. ..+..+..+++|++|++++|.+.+..+ ..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTC-CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCC-CEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 999988 566678899999999999999984443 466677777 89999999999888888999999999999999998
Q ss_pred C-CCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-c
Q 041473 374 G-EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-K 451 (488)
Q Consensus 374 ~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~ 451 (488)
+ ..|..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+. .
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 5 5788899999999999999999988889999999999999999999988888899999999999999999986653 4
Q ss_pred ccc-CCcceeeecCCCCcccc
Q 041473 452 GVF-SNSSAISLDGNDNLCGG 471 (488)
Q Consensus 452 ~~~-~~L~~l~l~~n~~~c~~ 471 (488)
..+ ++|+.|++++|++.|++
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSG
T ss_pred HhhhccCCEEEccCCCeeccc
Confidence 445 59999999999999976
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=7e-30 Score=258.04 Aligned_cols=312 Identities=13% Similarity=0.073 Sum_probs=213.1
Q ss_pred cccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccc---cccchh
Q 041473 158 NLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLF---GNIPSG 234 (488)
Q Consensus 158 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~ 234 (488)
.+++|+.|+++.+.+..... ......+..+++|+.++++.+.+.+ ++..+... ++|+++.++..... ...+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~--~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISP--KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA-ANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCH--HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC-TTCCEEEECBCCCCTTCTTSSSC
T ss_pred cCCCccEEEeeccCCCccCH--HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh-hHHHhhcccccccccchHHHHHH
Confidence 44555555555554432111 1333445567778888888776653 44444444 68888888754322 123345
Q ss_pred ccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCC-ccccCCccccEEecCCCccCCCCCccccCCCCC
Q 041473 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIP-SSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNL 313 (488)
Q Consensus 235 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 313 (488)
+..+++|+.+++++.... ..+..+..+++|++|++++|.+.+... ..+..+++|++|+++++...+..+.....+++|
T Consensus 266 l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred hhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 678899999999886433 456667788999999999998543322 335789999999998433222233444668999
Q ss_pred cEEEccC-----------CcCccc-cchhhhcccCceeEEEccCCcccccCCccccC-CCCccEEEcc----CCcccCC-
Q 041473 314 ILLDLSN-----------NNLTGT-IPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGI-LKNLGVLDVS----ENKLSGE- 375 (488)
Q Consensus 314 ~~L~l~~-----------~~~~~~-~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~----~n~l~~~- 375 (488)
++|++++ +.+++. ++.....++.+ ++|+++.+.+.+..+..+.. +++|++|+++ .+.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L-~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL-EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC-SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccC-eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 9999994 345433 22223345666 89999888887665555555 8899999997 4566632
Q ss_pred ----CccccccCCCCCEEecCCcc--ccccCcccc-cCCCCCCEEeccCcccCCc-cchhhhccccCceeeccCcccccc
Q 041473 376 ----IPNSLGSCVRLEQLVMNGNF--FQGNIPSSF-SSLRGIQNLDLSRNNLSGR-IPKYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 376 ----~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~-~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
++..+.++++|++|++++|. +++.....+ ..+++|++|++++|.++.. .+..+.++++|++|++++|+++..
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 33346779999999998654 554444333 4589999999999998864 455668899999999999997643
Q ss_pred -cCC-ccccCCcceeeecCCCCcccccccc
Q 041473 448 -VPI-KGVFSNSSAISLDGNDNLCGGISEL 475 (488)
Q Consensus 448 -~~~-~~~~~~L~~l~l~~n~~~c~~~~~l 475 (488)
++. ...+++|+.|++++|+..-.+++.|
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred HHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 332 3468999999999999776665544
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=224.12 Aligned_cols=273 Identities=19% Similarity=0.171 Sum_probs=206.8
Q ss_pred cEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEccc
Q 041473 193 EMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKG 272 (488)
Q Consensus 193 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 272 (488)
...+.+.+.+. .+|..+ ++++++|+++++.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 34 ~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp SEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 34445544443 233322 24788899998888876666788889999999999988876677788889999999999
Q ss_pred ccccCCCCccccCCccccEEecCCCccCCCCC-ccccCCCCCcEEEccCCc-CccccchhhhcccCceeEEEccCCcccc
Q 041473 273 NKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIP-SSLGKCKNLILLDLSNNN-LTGTIPTEVIGLSSLSIYLDLSKNQLNG 350 (488)
Q Consensus 273 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~L~l~~~~~~~ 350 (488)
|.+....+..+..+++|++|++++|.+.+... ..+..+++|++|++++|. +.+..+..+..++.+ ++|++++|.+.+
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L-~~L~l~~n~l~~ 188 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL-EELEIDASDLQS 188 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE-EEEEEEETTCCE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC-CEEECCCCCcCc
Confidence 98885555557888999999999998884443 467888999999999884 554445666677666 889999998887
Q ss_pred cCCccccCCCCccEEEccCCcccCCCcc-ccccCCCCCEEecCCccccccCccccc---CCCCCCEEeccCcccCC----
Q 041473 351 PLPSNFGILKNLGVLDVSENKLSGEIPN-SLGSCVRLEQLVMNGNFFQGNIPSSFS---SLRGIQNLDLSRNNLSG---- 422 (488)
Q Consensus 351 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~~~~---- 422 (488)
..+..+..+++|++|++++|.+. .++. .+..+++|++|++++|.+....+..+. ....++.++++++.+..
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 77888888899999999999887 4444 344688999999999988865444333 35678888888888775
Q ss_pred ccchhhhccccCceeeccCcccccccCC-ccccCCcceeeecCCCCcccc
Q 041473 423 RIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 423 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~c~~ 471 (488)
.+|..+..+++|++|++++|+++...+. ...+++|+.|++++||+.|++
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 3677788889999999999988843333 367889999999999998865
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.5e-26 Score=212.10 Aligned_cols=224 Identities=18% Similarity=0.239 Sum_probs=128.7
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
..++.|+++++.+. .+|..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 35666666666655 34444555666666666666655 34445555666666666666655 44555566666666666
Q ss_pred CCCccCCCCCccccC---------CCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEE
Q 041473 295 EGNRLEGSIPSSLGK---------CKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVL 365 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L 365 (488)
++|...+..|..+.. +++|++|++++|.++ .+|..+..++.+ ++|++++|.+. .+|..+..+++|++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~-~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLS-ALGPAIHHLPKLEEL 234 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCC-cCchhhccCCCCCEE
Confidence 665555555544432 556666666666555 555555555554 55666666555 233345555566666
Q ss_pred EccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccc
Q 041473 366 DVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHF 444 (488)
Q Consensus 366 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 444 (488)
++++|.+.+.+|..+..+++|++|++++|.+....|..+.++++|++|+|++|++.+.+|..+..+++|+.+++..+.+
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 6666555555555555556666666666555555555555566666666666655555666666666666665554443
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.3e-26 Score=207.87 Aligned_cols=234 Identities=21% Similarity=0.204 Sum_probs=201.8
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEccccc-ccCCCCccccCCccccEEe
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNK-FLGEIPSSVGNLTLLFTLS 293 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 293 (488)
+++++|+++++.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 589999999999987777788999999999999999887777888999999999999997 7766677889999999999
Q ss_pred cCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc
Q 041473 294 FEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS 373 (488)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 373 (488)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999998888889999999999999999985555557777777 89999999999777778999999999999999999
Q ss_pred CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC
Q 041473 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 450 (488)
+..|..+..+++|++|++++|.++...+..+..+++|+.|++++|++....+. ......++.+..+.+.+.+..|.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESG
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCch
Confidence 77789999999999999999999987778899999999999999999854331 12234566777888888887774
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.6e-26 Score=222.60 Aligned_cols=249 Identities=25% Similarity=0.268 Sum_probs=190.6
Q ss_pred ccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCC
Q 041473 217 LKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296 (488)
Q Consensus 217 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 296 (488)
...++..+..++ .+|..+ .++++.|++++|.+....+..|..+++|++|++++|.+....+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 445555555555 334333 26788888888888777777788888888888888888766667788888888888888
Q ss_pred CccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCC-cccccCCccccCCCCccEEEccCCcccCC
Q 041473 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKN-QLNGPLPSNFGILKNLGVLDVSENKLSGE 375 (488)
Q Consensus 297 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 375 (488)
|.++...+..+..+++|++|++++|.+....+..+..++.+ ++|++++| .+....+..|..+++|++|++++|.++ .
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL-RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC-CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc-CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 88886666678888888888888888875555566666666 78888884 444444557788888888888888887 5
Q ss_pred CccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-cccc
Q 041473 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVF 454 (488)
Q Consensus 376 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~ 454 (488)
+| .+..+++|++|++++|.++...+..|.++++|+.|++++|+++...+..|..+++|++|++++|+++...+. ...+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 55 467788888888888888877788888888888888888888877788888888888888888888754433 4567
Q ss_pred CCcceeeecCCCCcccc
Q 041473 455 SNSSAISLDGNDNLCGG 471 (488)
Q Consensus 455 ~~L~~l~l~~n~~~c~~ 471 (488)
++|+.|++++|||.|++
T Consensus 279 ~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TTCCEEECCSSCEECSS
T ss_pred cCCCEEEcCCCCccCCC
Confidence 88888888888888876
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.2e-26 Score=223.93 Aligned_cols=249 Identities=24% Similarity=0.241 Sum_probs=201.2
Q ss_pred ccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCC
Q 041473 217 LKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296 (488)
Q Consensus 217 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 296 (488)
...++..+..++. +|..+ .+++++|++++|.+....+..|..+++|++|++++|.+....+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4456665555553 34333 36789999999988877778888899999999999988877777888899999999999
Q ss_pred CccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCC-cccccCCccccCCCCccEEEccCCcccCC
Q 041473 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKN-QLNGPLPSNFGILKNLGVLDVSENKLSGE 375 (488)
Q Consensus 297 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 375 (488)
|.+....+..+..+++|++|++++|.+....+..+..++.+ ++|++++| .+....+..|..+++|++|++++|.++ .
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 210 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL-MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-D 210 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC-CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-S
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc-cEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-c
Confidence 99887777778889999999999998885555566677777 88999884 455445567888899999999999888 4
Q ss_pred CccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-cccc
Q 041473 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVF 454 (488)
Q Consensus 376 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~ 454 (488)
+| .+..+++|++|++++|.+....+..|.++++|+.|++++|.++...+..|.++++|++|++++|++++..+. ...+
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 44 477888999999999999888888899999999999999999888888889999999999999988854433 4568
Q ss_pred CCcceeeecCCCCcccc
Q 041473 455 SNSSAISLDGNDNLCGG 471 (488)
Q Consensus 455 ~~L~~l~l~~n~~~c~~ 471 (488)
++|+.|++++|||.|++
T Consensus 290 ~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDC 306 (452)
T ss_dssp TTCCEEECCSSCEECST
T ss_pred cCCCEEEccCCCcCCCC
Confidence 88999999999999887
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.6e-26 Score=211.28 Aligned_cols=223 Identities=20% Similarity=0.259 Sum_probs=201.2
Q ss_pred CCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEE
Q 041473 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILL 316 (488)
Q Consensus 237 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 316 (488)
..+.+++|+++++.+. ..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 45556777999999999999998 77888999999999999999998 778899999999999
Q ss_pred EccCCcCccccchhhhc---------ccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCC
Q 041473 317 DLSNNNLTGTIPTEVIG---------LSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE 387 (488)
Q Consensus 317 ~l~~~~~~~~~~~~~~~---------~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 387 (488)
++++|.+.+.+|..+.. ++.+ ++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L-~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNL-QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTC-CEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCC-CEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCC
Confidence 99999888788877654 6676 89999999998 77888999999999999999999 6777899999999
Q ss_pred EEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC-ccccCCcceeeecCC
Q 041473 388 QLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVFSNSSAISLDGN 465 (488)
Q Consensus 388 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n 465 (488)
+|++++|.+....+..+.++++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|. .+.+++|+.+++..+
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 999999999888999999999999999999999999999999999999999999999988874 677889999888755
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.8e-26 Score=214.95 Aligned_cols=258 Identities=17% Similarity=0.181 Sum_probs=169.2
Q ss_pred ccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcc
Q 041473 192 LEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLK 271 (488)
Q Consensus 192 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 271 (488)
++.++++++.+.+..+..+... ++|++|++++|.++...+..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRC-VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred CcEEECCCCcCcccCHHHhccC-CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 3444444443332222233333 467777777776665555667777777777777777765555556667777777777
Q ss_pred cccccCCCC-ccccCCccccEEecCCCc-cCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCccc
Q 041473 272 GNKFLGEIP-SSVGNLTLLFTLSFEGNR-LEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLN 349 (488)
Q Consensus 272 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~ 349 (488)
+|.+..... ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..|..+..++.+ ++|++++|.+.
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~~L~l~~n~l~ 211 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV-SHLILHMKQHI 211 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE-EEEEEECSCST
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC-CeecCCCCccc
Confidence 777664333 356677777777777763 544445566777777777777777775566666666655 67777777765
Q ss_pred ccCCccccCCCCccEEEccCCcccCCCcccc---ccCCCCCEEecCCccccc----cCcccccCCCCCCEEeccCcccCC
Q 041473 350 GPLPSNFGILKNLGVLDVSENKLSGEIPNSL---GSCVRLEQLVMNGNFFQG----NIPSSFSSLRGIQNLDLSRNNLSG 422 (488)
Q Consensus 350 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~ 422 (488)
......+..+++|++|++++|.+++..+..+ .....++.++++++.+.+ ..+..+.++++|+.|++++|+++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 3333334456778888888887774433322 235667777887777664 345677888899999999999885
Q ss_pred ccchhhhccccCceeeccCcccccccCCc
Q 041473 423 RIPKYFENFFFLQNLNLSSNHFEGEVPIK 451 (488)
Q Consensus 423 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 451 (488)
..+..|..+++|++|++++|++.+.+|..
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 44444688899999999999998887743
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.9e-28 Score=247.68 Aligned_cols=258 Identities=13% Similarity=0.078 Sum_probs=121.2
Q ss_pred cccCCccCcEEeccCCCCCC---CcC------------ccccCCcccccccccccccccccchhhc-CCCCccEEEeecc
Q 041473 11 KLGSLSKLRTLAVHFNNLSG---EIP------------SSFGNLSSLEFLSAAVNQFVGQIPETLS-ELKRMRSIGFGAN 74 (488)
Q Consensus 11 ~l~~~~~L~~L~l~~~~l~~---~~~------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~ 74 (488)
.+..+++|++|+++++.... ..+ ..+..+++|+.|+++++.+....+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 34556777777777654110 111 1123566677777777766544444443 5667777777766
Q ss_pred -ccccc-cchhhhccCCCcEEecccCCcCCCCCcch---hccCCCCcEEEcCCCc--ccc-cCCccccCCCCCceeeccc
Q 041473 75 -KLSGE-IPFSIYNLSSLSLLDFPVNQLQGSLPSDI---GFTLPNLEVLNFGNNQ--FTG-PIPASISNASNLMRLTIQK 146 (488)
Q Consensus 75 -~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~ 146 (488)
.++.. ++..+.++++|++|++++|.+++..+..+ ...+++|++|++++|. +.. .....+..+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 34322 33334466777777777766553222221 1235567777776664 110 0111123356677777766
Q ss_pred CC-CccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEE-ecCCCcccccCchhhhhhhccccEEEccc
Q 041473 147 NG-FSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMM-EISINNFGGMLPESVGNLSTRLKRFTVGN 224 (488)
Q Consensus 147 ~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 224 (488)
|. +......+..+++|+.+.+..+...............+..++.|+.+ .+.... ...++..... .++|++|++++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~-~~~L~~L~L~~ 298 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSV-CSRLTTLNLSY 298 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHH-HTTCCEEECTT
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHh-hCCCCEEEccC
Confidence 52 22211124455666666654433211111111222344555566655 222211 1112222222 24666666666
Q ss_pred ccccccc-chhccCCCCCCEEEccCCcCCCC-ccccccCCCCccEEEcc
Q 041473 225 NQLFGNI-PSGLGNLVNLELLDLGDNQFTGR-ILGSIGDLQKLQRLRLK 271 (488)
Q Consensus 225 ~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~l~ 271 (488)
|.++... ...+..+++|++|++.++ +... .......+++|++|++.
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence 6544321 122345566666666655 2211 11112235556666653
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.1e-26 Score=211.82 Aligned_cols=257 Identities=19% Similarity=0.168 Sum_probs=156.7
Q ss_pred CccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEc
Q 041473 191 RLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRL 270 (488)
Q Consensus 191 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 270 (488)
.++..+++.+.+.... ..+....++|++|++++|.++...+..+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHH-HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhH-HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 3455555555443222 2223333577777777777776666667777777777777777654332 666777777777
Q ss_pred ccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccc
Q 041473 271 KGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG 350 (488)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~ 350 (488)
++|.+.+. ...++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+..++.+ ++|++++|.+.+
T Consensus 88 s~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDT 158 (317)
T ss_dssp CSSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSE-EEEECTTSCCCE
T ss_pred cCCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCC-CEEECCCCCCCc
Confidence 77766522 2336777777777776644332 24567777777777765445455555555 677777777665
Q ss_pred cCCccc-cCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhh
Q 041473 351 PLPSNF-GILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFE 429 (488)
Q Consensus 351 ~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 429 (488)
..+..+ ..+++|++|++++|.++.. +. ...+++|++|++++|.++... ..+..+++|+.|++++|+++ .+|..+.
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALR 234 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhh
Confidence 555444 3566777777777776632 32 223667777777777766433 33666677777777777766 4555666
Q ss_pred ccccCceeeccCcccccc-cC-CccccCCcceeeec
Q 041473 430 NFFFLQNLNLSSNHFEGE-VP-IKGVFSNSSAISLD 463 (488)
Q Consensus 430 ~l~~L~~L~l~~n~~~~~-~~-~~~~~~~L~~l~l~ 463 (488)
.+++|+.|++++|++.+. .+ ....+++|+.+++.
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 667777777777776632 22 23445566666666
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=4.1e-28 Score=245.29 Aligned_cols=415 Identities=13% Similarity=0.066 Sum_probs=244.3
Q ss_pred cEEeccCCCCCCCcCccccCCccccccccccccccc---cc------------chhhcCCCCccEEEeeccccccccchh
Q 041473 19 RTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVG---QI------------PETLSELKRMRSIGFGANKLSGEIPFS 83 (488)
Q Consensus 19 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~---~~------------~~~~~~l~~L~~L~l~~~~l~~~~~~~ 83 (488)
+.+++.++... .....+..+++|+.|+++++.... .. +.....+++|++|+++++.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 34555443322 233456778889999999875321 11 122357889999999999888666666
Q ss_pred hh-ccCCCcEEecccC-CcCCCCCcchhccCCCCcEEEcCCCcccccCCccc----cCCCCCceeecccCC--CccC-CC
Q 041473 84 IY-NLSSLSLLDFPVN-QLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASI----SNASNLMRLTIQKNG--FSGK-VP 154 (488)
Q Consensus 84 ~~-~l~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~--~~~~-~~ 154 (488)
+. .+++|++|++++| .+.+.....+...+++|++|++++|.+....+.++ ..+++|++|+++++. +... ..
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 65 6889999999988 44422122344468999999999988765444333 356789999998876 1100 00
Q ss_pred C-cccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCccc--c----cCchhhhhhhccccEE-Eccccc
Q 041473 155 S-LENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFG--G----MLPESVGNLSTRLKRF-TVGNNQ 226 (488)
Q Consensus 155 ~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~--~----~~~~~~~~~~~~L~~L-~l~~~~ 226 (488)
. +..+++|+.|++.++.... .....+..++.|+.+.+..+... . .++..+... ++|+.+ .+....
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~-~~L~~Ls~~~~~~ 277 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLE------KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC-KELRCLSGFWDAV 277 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHH------HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC-TTCCEEECCBTCC
T ss_pred HHHHhCCCCcEEecCCCCcHH------HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC-CCcccccCCcccc
Confidence 1 2445888888887762111 24455566778888876554210 0 011222222 466666 232222
Q ss_pred cccccchhccCCCCCCEEEccCCcCCCCc-cccccCCCCccEEEcccccccCC-CCccccCCccccEEecCCC-------
Q 041473 227 LFGNIPSGLGNLVNLELLDLGDNQFTGRI-LGSIGDLQKLQRLRLKGNKFLGE-IPSSVGNLTLLFTLSFEGN------- 297 (488)
Q Consensus 227 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~------- 297 (488)
. ...+..+..+++|++|++++|.+.... ...+..+++|++|++.+| +.+. .+.....+++|++|++.++
T Consensus 278 ~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~ 355 (594)
T 2p1m_B 278 P-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEP 355 (594)
T ss_dssp G-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSC
T ss_pred h-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccccc
Confidence 1 123344446778888888887754322 223456788888888877 3321 1222235778888877432
Q ss_pred --ccCCCCCccc-cCCCCCcEEEccCCcCccccchhhh-cccCceeEEEcc--C----Cccccc-----CCccccCCCCc
Q 041473 298 --RLEGSIPSSL-GKCKNLILLDLSNNNLTGTIPTEVI-GLSSLSIYLDLS--K----NQLNGP-----LPSNFGILKNL 362 (488)
Q Consensus 298 --~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~~L~l~--~----~~~~~~-----~~~~~~~l~~L 362 (488)
.+++.....+ ..+++|+.|.+..+.+++.....+. .++.+ ++|+++ + +.+++. .+..+..+++|
T Consensus 356 ~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L-~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L 434 (594)
T 2p1m_B 356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM-TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL 434 (594)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTC-CEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC
T ss_pred CCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCc-ceeEeecccCCCcccccCCchhhHHHHHHhhCCCc
Confidence 2221111122 2367788887777777654444443 34455 777777 2 333311 11124556778
Q ss_pred cEEEccCCcccCCCcccccc-CCCCCEEecCCccccccCcccc-cCCCCCCEEeccCcccCCccch-hhhccccCceeec
Q 041473 363 GVLDVSENKLSGEIPNSLGS-CVRLEQLVMNGNFFQGNIPSSF-SSLRGIQNLDLSRNNLSGRIPK-YFENFFFLQNLNL 439 (488)
Q Consensus 363 ~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l 439 (488)
++|++++ .++...+..+.. +++|+.|++++|.+++.....+ .++++|++|++++|+++..... ....+++|+.|++
T Consensus 435 ~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 435 RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred cEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 8888866 454343344433 6778888888887765444444 5677888888888877544333 3455778888888
Q ss_pred cCcccc
Q 041473 440 SSNHFE 445 (488)
Q Consensus 440 ~~n~~~ 445 (488)
++|+++
T Consensus 514 ~~~~~~ 519 (594)
T 2p1m_B 514 SSCSVS 519 (594)
T ss_dssp ESSCCB
T ss_pred eCCCCC
Confidence 888774
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.6e-25 Score=217.32 Aligned_cols=246 Identities=20% Similarity=0.177 Sum_probs=175.8
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
++|++|++++|.+....|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.. ..++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 478888888888877777778888888888888887764433 777788888888888776322 2378888888
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCcccc-CCCCccEEEccCCccc
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFG-ILKNLGVLDVSENKLS 373 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~ 373 (488)
++|.+.+..+. .+++|+.|++++|.+++..|..+..++.+ ++|++++|.+.+..|..+. .+++|++|++++|.++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 88887754443 34678888888888876666666666666 7888888888766666665 6778888888888877
Q ss_pred CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccc-cC-Cc
Q 041473 374 GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGE-VP-IK 451 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~-~~ 451 (488)
+. +. +..+++|+.|++++|.++...+ .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+. .| ..
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 33 32 3347788888888888875443 4777788888888888877 4666777778888888888887732 22 24
Q ss_pred cccCCcceeeec-------CCCCcccccccc
Q 041473 452 GVFSNSSAISLD-------GNDNLCGGISEL 475 (488)
Q Consensus 452 ~~~~~L~~l~l~-------~n~~~c~~~~~l 475 (488)
+.++.++.++++ +++..|.+....
T Consensus 259 ~~l~~L~~l~~~~~~~~~~~~~~~c~~~~~~ 289 (487)
T 3oja_A 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289 (487)
T ss_dssp TTCHHHHHHHHHHHHHHTSSSSCCCSSTTCE
T ss_pred HhCCCCcEEeccccccccCCCcccccCCccc
Confidence 456667777775 777777765443
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.8e-25 Score=206.71 Aligned_cols=239 Identities=18% Similarity=0.195 Sum_probs=151.3
Q ss_pred cCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccE
Q 041473 188 NASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQR 267 (488)
Q Consensus 188 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 267 (488)
.++.|+.++++++.+....+..+... ++|++|++++|.++...+ +..+++|++|++++|.+.+. ...++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCE
Confidence 34567777777776665555555554 467777777777664433 66677777777777765422 22366777
Q ss_pred EEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhh-cccCceeEEEccCC
Q 041473 268 LRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVI-GLSSLSIYLDLSKN 346 (488)
Q Consensus 268 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~~L~l~~~ 346 (488)
|++++|.+....+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+. .++.+ ++|++++|
T Consensus 104 L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-~~L~L~~N 179 (317)
T 3o53_A 104 LHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYN 179 (317)
T ss_dssp EECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTS
T ss_pred EECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC-CEEECCCC
Confidence 7777776654322 2356677777777777655555666667777777777776654444443 34444 67777777
Q ss_pred cccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC-Cccc
Q 041473 347 QLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS-GRIP 425 (488)
Q Consensus 347 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 425 (488)
.+.+... ...+++|++|++++|.++ .+|..+..+++|++|++++|.++ ..+..+..+++|+.|++++|++. ..++
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred cCccccc--ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 7664322 223667777777777776 44445666777777777777776 34555666777777777777776 5566
Q ss_pred hhhhccccCceeeccCc
Q 041473 426 KYFENFFFLQNLNLSSN 442 (488)
Q Consensus 426 ~~l~~l~~L~~L~l~~n 442 (488)
.++..+++|+.+++.+|
T Consensus 256 ~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 256 DFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHHhccccceEEECCCc
Confidence 66677777777777655
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=6.2e-24 Score=191.73 Aligned_cols=208 Identities=23% Similarity=0.239 Sum_probs=173.3
Q ss_pred CCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEc
Q 041473 239 VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDL 318 (488)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 318 (488)
...+.++++++.+... +..+. +++++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~i-p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAI-PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSC-CSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCcc-CCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 3578899999888753 33333 67999999999988776678889999999999999998666677788999999999
Q ss_pred cCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccc
Q 041473 319 SNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG 398 (488)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 398 (488)
++|.+.+..+..+..++.+ ++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNL-AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCcCCHhHcccccCC-CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 9999885445555666766 899999999987777788889999999999999885555668889999999999999987
Q ss_pred cCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC
Q 041473 399 NIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 399 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 450 (488)
..+..|.++++|++|++++|+++...+..|..+++|+.|++++|++.+.++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 7777888899999999999999877777788889999999999999887763
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=3.1e-24 Score=195.20 Aligned_cols=208 Identities=23% Similarity=0.199 Sum_probs=170.7
Q ss_pred ccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCc
Q 041473 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLI 314 (488)
Q Consensus 235 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 314 (488)
++.++++++++++++.+..... .+. ++++.|++++|.+....+..+..+++|++|++++|.+.+..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCC-CCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 5677889999999988875433 332 689999999999887777788899999999999998874433 26788999
Q ss_pred EEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCc
Q 041473 315 LLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN 394 (488)
Q Consensus 315 ~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 394 (488)
+|++++|.+. .+|..+..++.+ ++|++++|++.+..+..|..+++|++|++++|.++...+..|..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 9999999888 777777777777 88999999988777788888899999999999888666666788889999999999
Q ss_pred cccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC
Q 041473 395 FFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 450 (488)
+++...+..|.++++|+.|++++|+++ .+|..+...++|+.+++++|++.+.+..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 988777777888899999999999888 6677777778899999999998887653
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.3e-25 Score=207.25 Aligned_cols=245 Identities=20% Similarity=0.196 Sum_probs=149.2
Q ss_pred CccEEecCCCcccccCchhhhhhhccccEEEcccccccc-ccchhcc-------CCCCCCEEEccCCcCCCCccccc--c
Q 041473 191 RLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFG-NIPSGLG-------NLVNLELLDLGDNQFTGRILGSI--G 260 (488)
Q Consensus 191 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~-------~l~~L~~L~L~~~~~~~~~~~~l--~ 260 (488)
.|+.+++.++.+ .++..+.. .++.|+++++.+.. ..+..+. .+++|++|++++|.+.+..+..+ .
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 344444444444 33333332 36666666666632 2333333 57788888888887775555544 6
Q ss_pred CCCCccEEEcccccccCCCCccccCC-----ccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCcccc--chhhhc
Q 041473 261 DLQKLQRLRLKGNKFLGEIPSSVGNL-----TLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTI--PTEVIG 333 (488)
Q Consensus 261 ~l~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~ 333 (488)
.+++|++|++++|.+.+. +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+.. +..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-- 195 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL-- 195 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS--
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH--
Confidence 777888888888877755 5555555 77788888877777666677777777777777777755331 1111
Q ss_pred ccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccC--CCc-cccccCCCCCEEecCCccccccCc-ccccCCCC
Q 041473 334 LSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG--EIP-NSLGSCVRLEQLVMNGNFFQGNIP-SSFSSLRG 409 (488)
Q Consensus 334 ~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~-~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~ 409 (488)
.+..+++|++|++++|.++. .++ ..+..+++|++|++++|.+....+ ..+..+++
T Consensus 196 ---------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 196 ---------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp ---------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred ---------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 12445566666666666651 111 223455666777777766665443 34455667
Q ss_pred CCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCc
Q 041473 410 IQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNL 468 (488)
Q Consensus 410 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 468 (488)
|++|++++|.++ .+|..+. ++|++|++++|++++. |....+++|+.|++++|++.
T Consensus 255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 777777777766 4454444 6677777777777644 55666667777777777654
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.5e-25 Score=215.64 Aligned_cols=218 Identities=22% Similarity=0.220 Sum_probs=98.8
Q ss_pred CCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEcc
Q 041473 240 NLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLS 319 (488)
Q Consensus 240 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 319 (488)
+|++|++++|.+....+..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.. ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 45555555555444444444445555555555554442222 444455555555555444211 12445555555
Q ss_pred CCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccc-cCCCCCEEecCCccccc
Q 041473 320 NNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLG-SCVRLEQLVMNGNFFQG 398 (488)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~ 398 (488)
+|.+.+..+.. ++.+ ++|++++|.+.+..+..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.++.
T Consensus 108 ~N~l~~~~~~~---l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCSR---GQGK-KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEECC---CSSC-EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCccc---cCCC-CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 55444222221 2222 4455555555444444444445555555555555443444333 34555555555555443
Q ss_pred cCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCcccc
Q 041473 399 NIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 399 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
.. ....+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++..+....+++|+.|++++|++.|++
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 184 VK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred cc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 21 11234455555555555543222 244445555555555555433233334445555555555555444
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=5.4e-26 Score=209.74 Aligned_cols=243 Identities=23% Similarity=0.217 Sum_probs=190.6
Q ss_pred ccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccC-CCCcccc-------CCccccEEecCCCccCCCCCcc
Q 041473 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLG-EIPSSVG-------NLTLLFTLSFEGNRLEGSIPSS 306 (488)
Q Consensus 235 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~ 306 (488)
++..++|++++++++.+ ..+..+.. .++.|++++|.+.. ..+..+. ++++|++|++++|.+.+..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 44556788888888877 34443332 27888888887742 2333333 6889999999999998878876
Q ss_pred c--cCCCCCcEEEccCCcCccccchhhhcc-----cCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCC--Cc
Q 041473 307 L--GKCKNLILLDLSNNNLTGTIPTEVIGL-----SSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE--IP 377 (488)
Q Consensus 307 ~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~ 377 (488)
+ ..+++|++|++++|.+++. |..+..+ +.+ ++|++++|.+.+..+..+..+++|++|++++|.+.+. .+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGL-KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTC-CEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCC-cEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 5 7889999999999999855 7777666 555 8999999999988888999999999999999997644 23
Q ss_pred ccc--ccCCCCCEEecCCccccc---cCcccccCCCCCCEEeccCcccCCccc-hhhhccccCceeeccCcccccccCCc
Q 041473 378 NSL--GSCVRLEQLVMNGNFFQG---NIPSSFSSLRGIQNLDLSRNNLSGRIP-KYFENFFFLQNLNLSSNHFEGEVPIK 451 (488)
Q Consensus 378 ~~~--~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~ 451 (488)
..+ ..+++|++|++++|.++. .....+.++++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 333 789999999999999983 233556788999999999999997764 56677899999999999998 56643
Q ss_pred cccCCcceeeecCCCCc-------cccccccccCcchhhhc
Q 041473 452 GVFSNSSAISLDGNDNL-------CGGISELHLSTCSIKES 485 (488)
Q Consensus 452 ~~~~~L~~l~l~~n~~~-------c~~~~~l~~~~c~~~~~ 485 (488)
-. ++|+.|++++|... ...+++|+++++++...
T Consensus 272 ~~-~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 272 LP-AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CC-SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTCC
T ss_pred cc-CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCCC
Confidence 33 89999999999776 34567888999988754
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=4.8e-24 Score=193.31 Aligned_cols=211 Identities=23% Similarity=0.216 Sum_probs=144.4
Q ss_pred CCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEc
Q 041473 239 VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDL 318 (488)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 318 (488)
+++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46788888888777666666777788888888888777555566777788888888888777666667777778888888
Q ss_pred cCCcCccccchhhhcccCceeEEEccCCccccc-CCccccCCCCccEEEccCCcccCCCccccccCCCCC----EEecCC
Q 041473 319 SNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGP-LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLE----QLVMNG 393 (488)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~----~L~l~~ 393 (488)
++|.+.+..+..+..++.+ ++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+ +|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTC-CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCC-CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 8777764444455555555 6777777776643 366667777777777777777655455555555555 677777
Q ss_pred ccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCc
Q 041473 394 NFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK 451 (488)
Q Consensus 394 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 451 (488)
|.+....+..+.. .+|+.|++++|.+++..+..|..+++|+.|++++|++.+.++..
T Consensus 187 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 7776544444433 36777777777777555556666777777777777777666543
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.8e-24 Score=193.98 Aligned_cols=207 Identities=22% Similarity=0.178 Sum_probs=109.4
Q ss_pred CCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEE
Q 041473 263 QKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLD 342 (488)
Q Consensus 263 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~ 342 (488)
+++++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++.+ ++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL-QKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC-CEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc-cEEE
Confidence 345556665555554444445555556666665555554444455555556666666555554444444444444 5555
Q ss_pred ccCCcccccCCccccCCCCccEEEccCCcccCC-CccccccCCCCCEEecCCccccccCcccccCCCCCC----EEeccC
Q 041473 343 LSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE-IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQ----NLDLSR 417 (488)
Q Consensus 343 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~l~~ 417 (488)
+++|.+.+..+..+..+++|++|++++|.++.. +|..+..+++|++|++++|.++...+..+..+++|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 555555544444455555566666665555532 355555555666666666555544444444444444 555555
Q ss_pred cccCCccchhhhccccCceeeccCcccccccCC-ccccCCcceeeecCCCCcccc
Q 041473 418 NNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI-KGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 418 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~~~c~~ 471 (488)
|.+....+..+. ..+|++|++++|.+++..+. ...+++|+.|++++||+.|++
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 555533333332 23555566665555533222 244555555666666655544
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.8e-23 Score=186.54 Aligned_cols=202 Identities=25% Similarity=0.281 Sum_probs=127.0
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecC
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE 295 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 295 (488)
..+.++++++.++. +|..+ .+++++|+++++.+....+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45566666666653 33322 2456677777766665555566666677777777666664444455666677777777
Q ss_pred CCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCC
Q 041473 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375 (488)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 375 (488)
+|.+.+..+..+..+++|++|++++|.+++..+..+..++.+ ++|++++|.+.+..+..|..+++|++|++++|.++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 766665555556666667777777776664444445555555 6677777766655555566666777777777766644
Q ss_pred CccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC
Q 041473 376 IPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 376 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 421 (488)
.+..|..+++|++|++++|.++...+..|..+++|+.|++++|++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 4455666667777777777666555556666667777777777665
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.2e-22 Score=202.46 Aligned_cols=268 Identities=28% Similarity=0.326 Sum_probs=151.7
Q ss_pred CccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeec
Q 041473 65 RMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTI 144 (488)
Q Consensus 65 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 144 (488)
++++|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|++. .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 4666666666666 4454443 56666666666665 5554 2456666666666555 2333 3455555555
Q ss_pred ccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccc
Q 041473 145 QKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGN 224 (488)
Q Consensus 145 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 224 (488)
++|.+..... .+ ++|++|++++
T Consensus 109 s~N~l~~l~~---~l-------------------------------------------------------~~L~~L~L~~ 130 (622)
T 3g06_A 109 FSNPLTHLPA---LP-------------------------------------------------------SGLCKLWIFG 130 (622)
T ss_dssp CSCCCCCCCC---CC-------------------------------------------------------TTCCEEECCS
T ss_pred cCCcCCCCCC---CC-------------------------------------------------------CCcCEEECCC
Confidence 5554432211 11 2444444444
Q ss_pred cccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCC
Q 041473 225 NQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIP 304 (488)
Q Consensus 225 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 304 (488)
|.++. +|. .+++|++|++++|.+.... . .+++|+.|++++|.+.. ++ ..+++|+.|++++|.+.+ +|
T Consensus 131 N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~ 197 (622)
T 3g06_A 131 NQLTS-LPV---LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LP 197 (622)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CC
T ss_pred CCCCc-CCC---CCCCCCEEECcCCcCCCcC-C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CC
Confidence 44432 222 1255666666666554321 1 23556666666666553 22 345666666666666653 23
Q ss_pred ccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCC
Q 041473 305 SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCV 384 (488)
Q Consensus 305 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 384 (488)
.. .++|+.|++++|.++ .+|..+ +.+ ++|++++|.+.+ +| ..+++|++|++++|.++ .+|. .++
T Consensus 198 ~~---~~~L~~L~L~~N~l~-~l~~~~---~~L-~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~ 261 (622)
T 3g06_A 198 TL---PSELYKLWAYNNRLT-SLPALP---SGL-KELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPS 261 (622)
T ss_dssp CC---CTTCCEEECCSSCCS-SCCCCC---TTC-CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCT
T ss_pred Cc---cchhhEEECcCCccc-ccCCCC---CCC-CEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccc
Confidence 22 356677777777666 444321 223 666666666663 33 33467777777777776 4554 456
Q ss_pred CCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccc
Q 041473 385 RLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFF 432 (488)
Q Consensus 385 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 432 (488)
+|+.|++++|.++ .+|..+.++++|+.|++++|++++..|..+..++
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 7777777777777 4566677777777777777777766666665554
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=2.8e-22 Score=199.77 Aligned_cols=266 Identities=23% Similarity=0.273 Sum_probs=182.9
Q ss_pred ccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEec
Q 041473 16 SKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDF 95 (488)
Q Consensus 16 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 95 (488)
..+++|+++++.++ .+|..+. ++|++|++++|.+.. +|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 35889999999998 6666554 789999999999874 343 5789999999999988 4555 6789999999
Q ss_pred ccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCC
Q 041473 96 PVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNG 175 (488)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 175 (488)
++|.++ .+|. .+++|+.|++++|++. .+|.. +++|++|++++|.+..... ..++|+.|++++|.+...
T Consensus 109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCC-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC
T ss_pred cCCcCC-CCCC----CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCC
Confidence 999988 6776 3678999999999887 45543 4889999999998876433 346788888888877653
Q ss_pred CCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCc
Q 041473 176 EKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRI 255 (488)
Q Consensus 176 ~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 255 (488)
+ ..++.|+.++++.|.+.+ ++. ..++|+.|++.+|.++. +|. .+++|++|++++|.+....
T Consensus 177 ~----------~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp 237 (622)
T 3g06_A 177 P----------MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP 237 (622)
T ss_dssp C----------CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC
T ss_pred c----------ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC
Confidence 2 234667777777776553 221 12466777777766653 222 2356677777776665422
Q ss_pred cccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhh
Q 041473 256 LGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVI 332 (488)
Q Consensus 256 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 332 (488)
..+++|+.|++++|.+. .+|. .+++|++|++++|.+. .+|..+..+++|+.|++++|++.+..|..+.
T Consensus 238 ----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 238 ----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp ----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred ----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 33466677777776665 2332 4566667777776666 4566666666677777777766655555443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=6.3e-23 Score=186.57 Aligned_cols=200 Identities=24% Similarity=0.240 Sum_probs=148.9
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
++++++++.++.++. +|..+ .+++++|++++|.+....+..+..+++|++|++++|.+....+ ...+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred CCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEEC
Confidence 467888888877764 33333 2678888888888876666777888888888888887764332 267788888888
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccC
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG 374 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 374 (488)
++|.+. .+|..+..+++|++|++++|.+++..+..+..++.+ ++|++++|.+.+..+..|..+++|++|++++|.++.
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-CEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 888877 566677778888888888888875555666667666 788888888886667777778888888888888884
Q ss_pred CCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCC
Q 041473 375 EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG 422 (488)
Q Consensus 375 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 422 (488)
..+..|..+++|+.|++++|+++ ..|..+..+++|+.|++++|++..
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 44455677888888888888887 455566666788888888887763
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.4e-22 Score=181.44 Aligned_cols=220 Identities=24% Similarity=0.233 Sum_probs=153.3
Q ss_pred ccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCC
Q 041473 217 LKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEG 296 (488)
Q Consensus 217 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 296 (488)
+..+.+.++.+... .....+++|++|++.++.+.. ...+..+++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 33444444444322 224456777777777776653 23466677777777777776642 2566777788888887
Q ss_pred CccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCC
Q 041473 297 NRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEI 376 (488)
Q Consensus 297 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 376 (488)
|.+.+..+..+..+++|++|++++|.+++..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL-TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC-CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 77776666667777778888888877774444445556665 67777777777666666777788888888888887555
Q ss_pred ccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCC
Q 041473 377 PNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 377 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 450 (488)
+..+..+++|++|++++|.+....+..+..+++|+.|++++|++.. .+++|+.+++++|.+++.+|.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccC
Confidence 5667778888888888888877666777888888888888887763 345778888888888877663
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=4.3e-22 Score=179.76 Aligned_cols=212 Identities=23% Similarity=0.229 Sum_probs=164.8
Q ss_pred CCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccC
Q 041473 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSN 320 (488)
Q Consensus 241 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 320 (488)
+..+++.++.+.. ......+++|+.|++.++.+... + .+..+++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~~-~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTD--AVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTS--EECHHHHTTCCEEECTTSCCCCC-T-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCccccc--ccccccccceeeeeeCCCCcccc-c-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 3445555555542 23355678899999999887633 2 477889999999999988743 4678889999999999
Q ss_pred CcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccC
Q 041473 321 NNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400 (488)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 400 (488)
|.+++..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++...
T Consensus 95 n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNL-KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp SCCCCCCTTTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccCccChhHhcCCcCC-CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 98885555556667776 88999999888777777888888999999999888666666788889999999999888777
Q ss_pred cccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCC
Q 041473 401 PSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGN 465 (488)
Q Consensus 401 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 465 (488)
+..+.++++|+.|++++|++++..+..+..+++|+.|++++|++.+.+| +++.+++.+|
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~------~l~~l~~~~n 232 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------GIRYLSEWIN 232 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT------TTHHHHHHHH
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc------HHHHHHHHHH
Confidence 7778888899999999998887777778888889999999988887666 4555555544
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.2e-21 Score=171.92 Aligned_cols=181 Identities=23% Similarity=0.266 Sum_probs=156.6
Q ss_pred CCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEE
Q 041473 263 QKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLD 342 (488)
Q Consensus 263 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~ 342 (488)
.+.+.++++++.+. .+|..+. +.+++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++.+ ++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL-GTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC-CEEE
Confidence 45788999998877 4454443 689999999999998888889999999999999999987666667777777 8999
Q ss_pred ccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCC
Q 041473 343 LSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG 422 (488)
Q Consensus 343 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 422 (488)
+++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.++...+..|.++++|++|++++|++++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999997777888899999999999999996666667889999999999999997777789999999999999999998
Q ss_pred ccchhhhccccCceeeccCcccccc
Q 041473 423 RIPKYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 423 ~~~~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
..+..|..+++|+.|++++|++.+.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8888899999999999999999886
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=3.4e-23 Score=195.17 Aligned_cols=252 Identities=15% Similarity=0.154 Sum_probs=178.3
Q ss_pred EecCCCcccccCchhhhhhhccccEEEccccccccccc----hhccCCC-CCCEEEccCCcCCCCccccccCC-----CC
Q 041473 195 MEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIP----SGLGNLV-NLELLDLGDNQFTGRILGSIGDL-----QK 264 (488)
Q Consensus 195 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~L~~~~~~~~~~~~l~~l-----~~ 264 (488)
..++.+.+.+.++..+.. .++|++|++++|.++...+ ..+..++ +|++|++++|.+....+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 456667666555554433 3569999999998886665 6677787 89999999998876655555543 88
Q ss_pred ccEEEcccccccCCCCcc----ccCC-ccccEEecCCCccCCCCCccc----cC-CCCCcEEEccCCcCccccc----hh
Q 041473 265 LQRLRLKGNKFLGEIPSS----VGNL-TLLFTLSFEGNRLEGSIPSSL----GK-CKNLILLDLSNNNLTGTIP----TE 330 (488)
Q Consensus 265 L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~----~~ 330 (488)
|++|++++|.+.+..+.. +..+ ++|++|++++|.+.+..+..+ .. +++|++|++++|.+.+... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999887655543 3344 789999999998876555433 33 3689999999998875433 33
Q ss_pred hhcccCceeEEEccCCcccccCCccc----cCC-CCccEEEccCCcccCC----Ccccccc-CCCCCEEecCCccccccC
Q 041473 331 VIGLSSLSIYLDLSKNQLNGPLPSNF----GIL-KNLGVLDVSENKLSGE----IPNSLGS-CVRLEQLVMNGNFFQGNI 400 (488)
Q Consensus 331 ~~~~~~l~~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~L~l~~n~l~~~~ 400 (488)
+...+..+++|++++|.+.+..+..+ ..+ ++|++|++++|.++.. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34444233889999998876555433 334 5899999999988853 3444544 458999999999888654
Q ss_pred c----ccccCCCCCCEEeccCcccCCc-------cchhhhccccCceeeccCcccccc
Q 041473 401 P----SSFSSLRGIQNLDLSRNNLSGR-------IPKYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 401 ~----~~~~~l~~L~~L~l~~n~~~~~-------~~~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
. ..+..+++|+.|++++|.+... ++..+..+++|++|++++|++...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4 3456678899999999985533 234566777888899999988755
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4.5e-22 Score=183.34 Aligned_cols=228 Identities=21% Similarity=0.191 Sum_probs=142.3
Q ss_pred cccEEEccccccccccch---hccCCCCCCEEEccCCcCCCCccccc--cCCCCccEEEcccccccCCCC----ccccCC
Q 041473 216 RLKRFTVGNNQLFGNIPS---GLGNLVNLELLDLGDNQFTGRILGSI--GDLQKLQRLRLKGNKFLGEIP----SSVGNL 286 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~L~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~~~~~ 286 (488)
.++.+.+.++.+...... ....+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466666666655421111 11223557777777777665555555 666777777777776664333 223356
Q ss_pred ccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEE
Q 041473 287 TLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLD 366 (488)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 366 (488)
++|++|++++|.+.+..+..+..+++|++|++++|++.+.... ..+..+..+++|++|+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL---------------------MAALCPHKFPAIQNLA 203 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH---------------------HTTSCTTSSCCCCSCB
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh---------------------hHHHhhhcCCCCCEEE
Confidence 6666677766666655556666666666666666654321000 0112234567777788
Q ss_pred ccCCcccCCCcc----ccccCCCCCEEecCCccccccCcccccCC---CCCCEEeccCcccCCccchhhhccccCceeec
Q 041473 367 VSENKLSGEIPN----SLGSCVRLEQLVMNGNFFQGNIPSSFSSL---RGIQNLDLSRNNLSGRIPKYFENFFFLQNLNL 439 (488)
Q Consensus 367 l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 439 (488)
+++|.++ .++. .+..+++|++|++++|.+....|..+..+ ++|++|++++|+++ .+|..+. ++|++|++
T Consensus 204 Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 204 LRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDL 279 (310)
T ss_dssp CCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred CCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence 8887776 3333 24567788888888888876656555555 68888888888887 5555553 68888888
Q ss_pred cCcccccccCCccccCCcceeeecCCCCcc
Q 041473 440 SSNHFEGEVPIKGVFSNSSAISLDGNDNLC 469 (488)
Q Consensus 440 ~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c 469 (488)
++|++++ +|....+++|+.|++++|++..
T Consensus 280 s~N~l~~-~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 280 SSNRLNR-APQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCCCS-CCCTTSCCCCSCEECSSTTTSC
T ss_pred CCCcCCC-CchhhhCCCccEEECcCCCCCC
Confidence 8888874 3545667788888888887654
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=6.2e-21 Score=170.04 Aligned_cols=181 Identities=21% Similarity=0.199 Sum_probs=158.0
Q ss_pred CCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEc
Q 041473 239 VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDL 318 (488)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 318 (488)
...++++++++.+.... ..+. ++++.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45778999999887443 3343 68999999999999887778999999999999999999888888999999999999
Q ss_pred cCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccc
Q 041473 319 SNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG 398 (488)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 398 (488)
++|.+++..+..+..++.+ ++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|+.|++++|++..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQL-DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCC-CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 9999985555666777777 899999999997777778999999999999999996666679999999999999999998
Q ss_pred cCcccccCCCCCCEEeccCcccCCc
Q 041473 399 NIPSSFSSLRGIQNLDLSRNNLSGR 423 (488)
Q Consensus 399 ~~~~~~~~l~~L~~L~l~~n~~~~~ 423 (488)
..+..|..+++|+.|++++|++...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7788899999999999999999865
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.1e-21 Score=173.57 Aligned_cols=196 Identities=15% Similarity=0.168 Sum_probs=95.5
Q ss_pred CCCEEEccCCcCCCCccccccCCCCccEEEccccc-ccCCCCccccCCccccEEecCC-CccCCCCCccccCCCCCcEEE
Q 041473 240 NLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNK-FLGEIPSSVGNLTLLFTLSFEG-NRLEGSIPSSLGKCKNLILLD 317 (488)
Q Consensus 240 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 317 (488)
++++|++++|.+....+..|..+++|++|++++|. +....+..|.++++|++|++++ |.+....+.+|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44555555555444444444445555555555553 4333333444555555555554 444433334444555555555
Q ss_pred ccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCcc---EEEccCC-cccCCCccccccCCCCC-EEecC
Q 041473 318 LSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLG---VLDVSEN-KLSGEIPNSLGSCVRLE-QLVMN 392 (488)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~l~ 392 (488)
+++|.++ .+|. +..+++|+ +|++++| .++...+..|.++++|+ +|+++
T Consensus 112 l~~n~l~-~lp~--------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 112 IFNTGLK-MFPD--------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEECCC-SCCC--------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred CCCCCCc-cccc--------------------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 5555544 2332 23333333 5555555 44433333455555555 55555
Q ss_pred CccccccCcccccCCCCCCEEeccCcc-cCCccchhhhcc-ccCceeeccCcccccccCCccccCCcceeeecCC
Q 041473 393 GNFFQGNIPSSFSSLRGIQNLDLSRNN-LSGRIPKYFENF-FFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGN 465 (488)
Q Consensus 393 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n 465 (488)
+|.++...+..|.. ++|+.|++++|+ ++...+..|.++ ++|++|++++|++++ +|.. .+++|+.|+++++
T Consensus 165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNT 236 (239)
T ss_dssp SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC
T ss_pred CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCc
Confidence 55555333334443 555555555553 554444555555 556666666555552 3322 4555555555554
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=8.7e-22 Score=174.32 Aligned_cols=189 Identities=17% Similarity=0.149 Sum_probs=135.9
Q ss_pred cccEEecCCCccCCCCCccccCCCCCcEEEccCCc-CccccchhhhcccCceeEEEccC-CcccccCCccccCCCCccEE
Q 041473 288 LLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNN-LTGTIPTEVIGLSSLSIYLDLSK-NQLNGPLPSNFGILKNLGVL 365 (488)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~L~l~~-~~~~~~~~~~~~~l~~L~~L 365 (488)
++++|++++|.+++..+.++..+++|++|++++|. ++...+..+..++.+ ++|++++ |.+....+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L-~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV-THIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTC-CEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCC-cEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 45555555555554444455555566666666664 442233344444444 5666665 66665556678888999999
Q ss_pred EccCCcccCCCccccccCCCCC---EEecCCc-cccccCcccccCCCCCC-EEeccCcccCCccchhhhccccCceeecc
Q 041473 366 DVSENKLSGEIPNSLGSCVRLE---QLVMNGN-FFQGNIPSSFSSLRGIQ-NLDLSRNNLSGRIPKYFENFFFLQNLNLS 440 (488)
Q Consensus 366 ~l~~n~l~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 440 (488)
++++|.++ .+|. +..+++|+ +|++++| .+....+..|.++++|+ .|++++|.++...+..+.. ++|++|+++
T Consensus 111 ~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 99999998 4675 88888998 9999999 99877778899999999 9999999999555555655 899999999
Q ss_pred Ccc-cccccC-Ccccc-CCcceeeecCCCCc------cccccccccCcc
Q 041473 441 SNH-FEGEVP-IKGVF-SNSSAISLDGNDNL------CGGISELHLSTC 480 (488)
Q Consensus 441 ~n~-~~~~~~-~~~~~-~~L~~l~l~~n~~~------c~~~~~l~~~~c 480 (488)
+|+ ++...+ ....+ ++|+.|++++|+.. ...++.|++++|
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 996 774433 34567 89999999999765 334556666655
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.6e-22 Score=190.63 Aligned_cols=236 Identities=20% Similarity=0.228 Sum_probs=126.6
Q ss_pred CCCccEEecCCCcccccCc----hhhhhhhccccEEEccccccccccchhccCC-----CCCCEEEccCCcCCCCcccc-
Q 041473 189 ASRLEMMEISINNFGGMLP----ESVGNLSTRLKRFTVGNNQLFGNIPSGLGNL-----VNLELLDLGDNQFTGRILGS- 258 (488)
Q Consensus 189 ~~~L~~l~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~L~~~~~~~~~~~~- 258 (488)
.+.|+.++++++.+.+... ..+...+.+|++|++++|.++...+..+..+ ++|++|++++|.+....+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3446667776666655544 3333332256667776666665544444443 66667777666665443332
Q ss_pred ---ccCC-CCccEEEcccccccCCCCccc----cC-CccccEEecCCCccCCCCCc----cccCCC-CCcEEEccCCcCc
Q 041473 259 ---IGDL-QKLQRLRLKGNKFLGEIPSSV----GN-LTLLFTLSFEGNRLEGSIPS----SLGKCK-NLILLDLSNNNLT 324 (488)
Q Consensus 259 ---l~~l-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~----~~~~~~-~L~~L~l~~~~~~ 324 (488)
+..+ ++|++|++++|.+.+..+..+ .. +++|++|++++|.+....+. .+...+ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 2333 566677776666654433322 22 24666777766666533222 223333 6667777766665
Q ss_pred cccchhhh----cc-cCceeEEEccCCccccc----CCccccC-CCCccEEEccCCcccCCCc----cccccCCCCCEEe
Q 041473 325 GTIPTEVI----GL-SSLSIYLDLSKNQLNGP----LPSNFGI-LKNLGVLDVSENKLSGEIP----NSLGSCVRLEQLV 390 (488)
Q Consensus 325 ~~~~~~~~----~~-~~l~~~L~l~~~~~~~~----~~~~~~~-l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~ 390 (488)
+..+..+. .. ..+ ++|++++|.+.+. ++..+.. .++|++|++++|.++...+ ..+..+++|++|+
T Consensus 181 ~~~~~~l~~~l~~~~~~L-~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 181 SKNCAELAKFLASIPASV-TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp GSCHHHHHHHHHTSCTTC-CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred hhhHHHHHHHHHhCCCCC-CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 44443332 22 233 6666766666542 2223333 2466677777666664333 2334556667777
Q ss_pred cCCccccccC-------cccccCCCCCCEEeccCcccCCccc
Q 041473 391 MNGNFFQGNI-------PSSFSSLRGIQNLDLSRNNLSGRIP 425 (488)
Q Consensus 391 l~~n~l~~~~-------~~~~~~l~~L~~L~l~~n~~~~~~~ 425 (488)
+++|.+.... +..+..+++|+.|++++|++....+
T Consensus 260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred eccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 7666633222 2344555666666677666664433
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=7.5e-21 Score=174.65 Aligned_cols=195 Identities=26% Similarity=0.343 Sum_probs=163.5
Q ss_pred ccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCc
Q 041473 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLI 314 (488)
Q Consensus 235 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 314 (488)
...+++|++|+++++.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 45678999999999988753 257889999999999999885544 88999999999999998853 4688899999
Q ss_pred EEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCc
Q 041473 315 LLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN 394 (488)
Q Consensus 315 ~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 394 (488)
+|++++|.+. .++. +..++.+ ++|++++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|++|++++|
T Consensus 111 ~L~l~~n~l~-~~~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 111 TLDLTSTQIT-DVTP-LAGLSNL-QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp EEECTTSCCC-CCGG-GTTCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred EEECCCCCCC-Cchh-hcCCCCC-CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCC
Confidence 9999999998 4443 6677777 899999999985443 7888999999999999984 444 888999999999999
Q ss_pred cccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 395 FFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
.+....+ +..+++|++|++++|++.+..+ +..+++|+.|++++|++++
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 9985443 7889999999999999986553 7889999999999999975
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.8e-22 Score=187.43 Aligned_cols=252 Identities=18% Similarity=0.237 Sum_probs=167.2
Q ss_pred CCccEEecCCCcccccCchhhhhh-hccccEEEccccccccccchhccCCCCCCEEEccCCcCCCC-ccccccCCCCccE
Q 041473 190 SRLEMMEISINNFGGMLPESVGNL-STRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGR-ILGSIGDLQKLQR 267 (488)
Q Consensus 190 ~~L~~l~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~ 267 (488)
..++.++++.+.+.+ ..+... .+.++.+++.++.+....+. +..+++|++|++++|.+... .+..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 346777887765542 222222 24788888888877755444 55678888888888876543 4556677788888
Q ss_pred EEcccccccCCCCccccCCccccEEecCCC-ccCCC-CCccccCCCCCcEEEccCC-cCccc-cchhhhccc-CceeEEE
Q 041473 268 LRLKGNKFLGEIPSSVGNLTLLFTLSFEGN-RLEGS-IPSSLGKCKNLILLDLSNN-NLTGT-IPTEVIGLS-SLSIYLD 342 (488)
Q Consensus 268 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~l~~~L~ 342 (488)
|++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ .+ ++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L-~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC-CEEE
Confidence 888888766555566777888888888887 45432 4445667788888888888 77643 455566666 55 7888
Q ss_pred ccCCc--cc-ccCCccccCCCCccEEEccCCc-ccCCCccccccCCCCCEEecCCcc-ccccCcccccCCCCCCEEeccC
Q 041473 343 LSKNQ--LN-GPLPSNFGILKNLGVLDVSENK-LSGEIPNSLGSCVRLEQLVMNGNF-FQGNIPSSFSSLRGIQNLDLSR 417 (488)
Q Consensus 343 l~~~~--~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 417 (488)
+++|. +. ..++..+..+++|++|++++|. ++...+..+..+++|++|++++|. +.......+.++++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 88873 33 2345556667788888888887 555666677777888888888874 3333333566778888888888
Q ss_pred cccCCccchhhhcc-ccCceeeccCcccccccCC
Q 041473 418 NNLSGRIPKYFENF-FFLQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 418 n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~ 450 (488)
| +... .+..+ .+++.|++++|.+++..|.
T Consensus 282 ~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 282 I-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp S-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred c-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 7 3322 23333 2466666777777766553
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1e-20 Score=173.77 Aligned_cols=192 Identities=24% Similarity=0.358 Sum_probs=162.8
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEec
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSF 294 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 294 (488)
+++++|++.++.+.. .+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. + .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence 589999999999875 33 58889999999999999886554 88899999999999998753 3 5889999999999
Q ss_pred CCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccC
Q 041473 295 EGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSG 374 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 374 (488)
++|.+.+. + .+..+++|++|++++|.+.+ ++. +..++.+ ++|++++|.+.+..+ +..+++|++|++++|.+++
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNL-QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTC-CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCc-cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 99999853 3 48899999999999999984 443 6677777 899999999985443 8889999999999999984
Q ss_pred CCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCc
Q 041473 375 EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR 423 (488)
Q Consensus 375 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 423 (488)
++. +..+++|++|++++|++.... .+..+++|+.|++++|+++..
T Consensus 188 -~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 188 -ISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp -CGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred -Chh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 443 788999999999999998554 388999999999999999853
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.2e-22 Score=193.52 Aligned_cols=249 Identities=22% Similarity=0.261 Sum_probs=156.8
Q ss_pred ccccEEEccccccccccc----hhccCCCCCCEEEccCCcCCC---Ccccc-------ccCCCCccEEEcccccccC---
Q 041473 215 TRLKRFTVGNNQLFGNIP----SGLGNLVNLELLDLGDNQFTG---RILGS-------IGDLQKLQRLRLKGNKFLG--- 277 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~L~~~~~~~---~~~~~-------l~~l~~L~~L~l~~~~~~~--- 277 (488)
++|++|++++|.+....+ ..+..+++|++|++++|.+.. ..+.. +..+++|++|++++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 356666666665554322 234566677777776654332 11222 2456677777777776654
Q ss_pred -CCCccccCCccccEEecCCCccCCCCCcc----ccCC---------CCCcEEEccCCcCc-cccc---hhhhcccCcee
Q 041473 278 -EIPSSVGNLTLLFTLSFEGNRLEGSIPSS----LGKC---------KNLILLDLSNNNLT-GTIP---TEVIGLSSLSI 339 (488)
Q Consensus 278 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~---------~~L~~L~l~~~~~~-~~~~---~~~~~~~~l~~ 339 (488)
.++..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.+. ..++ ..+..++.+ +
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-~ 190 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL-H 190 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC-C
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc-C
Confidence 23344566677777777777664322222 2222 67777888777775 2333 244455555 7
Q ss_pred EEEccCCcccc-----cCCccccCCCCccEEEccCCccc----CCCccccccCCCCCEEecCCcccccc----Cccccc-
Q 041473 340 YLDLSKNQLNG-----PLPSNFGILKNLGVLDVSENKLS----GEIPNSLGSCVRLEQLVMNGNFFQGN----IPSSFS- 405 (488)
Q Consensus 340 ~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~- 405 (488)
+|++++|.+.. ..+..+..+++|++|++++|.++ ..+|..+..+++|++|++++|.++.. .+..+.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 77887777652 23336677888888888888885 46677778888888888888888754 344553
Q ss_pred -CCCCCCEEeccCcccCC----ccchhh-hccccCceeeccCcccccccCC----ccccCCcceeeecC
Q 041473 406 -SLRGIQNLDLSRNNLSG----RIPKYF-ENFFFLQNLNLSSNHFEGEVPI----KGVFSNSSAISLDG 464 (488)
Q Consensus 406 -~l~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~L~l~~n~~~~~~~~----~~~~~~L~~l~l~~ 464 (488)
.+++|+.|+|++|.++. .+|..+ ..+++|++|++++|++++..+. ...+++++.+++..
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 37888888888888886 366666 5578888888888888865431 22344454454443
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=7.2e-23 Score=195.01 Aligned_cols=241 Identities=20% Similarity=0.207 Sum_probs=189.1
Q ss_pred ccchhccCCCCCCEEEccCCcCCCCcc----ccccCCCCccEEEccccccc---CCCCcc-------ccCCccccEEecC
Q 041473 230 NIPSGLGNLVNLELLDLGDNQFTGRIL----GSIGDLQKLQRLRLKGNKFL---GEIPSS-------VGNLTLLFTLSFE 295 (488)
Q Consensus 230 ~~~~~l~~l~~L~~L~L~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~---~~~~~~-------~~~~~~L~~L~l~ 295 (488)
.++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+. +..|.. +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 345667888999999999998875433 34778999999999997543 223333 3688999999999
Q ss_pred CCccCCC----CCccccCCCCCcEEEccCCcCccccchhhhc----c---------cCceeEEEccCCcccc-cCC---c
Q 041473 296 GNRLEGS----IPSSLGKCKNLILLDLSNNNLTGTIPTEVIG----L---------SSLSIYLDLSKNQLNG-PLP---S 354 (488)
Q Consensus 296 ~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~---------~~l~~~L~l~~~~~~~-~~~---~ 354 (488)
+|.+... ++..+..+++|++|++++|.+.+..+..+.. + +.+ ++|++++|++.. ..+ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L-~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL-RSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC-CEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC-cEEECCCCCCCcHHHHHHHH
Confidence 9999863 5667788999999999999987443433332 2 566 899999999862 333 3
Q ss_pred cccCCCCccEEEccCCcccC-----CCccccccCCCCCEEecCCcccc----ccCcccccCCCCCCEEeccCcccCCc--
Q 041473 355 NFGILKNLGVLDVSENKLSG-----EIPNSLGSCVRLEQLVMNGNFFQ----GNIPSSFSSLRGIQNLDLSRNNLSGR-- 423 (488)
Q Consensus 355 ~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~~~~~-- 423 (488)
.+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++ ...+..+..+++|++|+|++|.++..
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 56678999999999999873 23337888999999999999996 45677888999999999999999866
Q ss_pred --cchhhhc--cccCceeeccCccccc----ccCC-c-cccCCcceeeecCCCCcccc
Q 041473 424 --IPKYFEN--FFFLQNLNLSSNHFEG----EVPI-K-GVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 424 --~~~~l~~--l~~L~~L~l~~n~~~~----~~~~-~-~~~~~L~~l~l~~n~~~c~~ 471 (488)
++..+.. +++|+.|++++|+++. .+|. . ..+++|+.|++++|+....+
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 4566644 8999999999999987 3553 3 44799999999999887655
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=6.1e-22 Score=185.08 Aligned_cols=246 Identities=17% Similarity=0.197 Sum_probs=188.2
Q ss_pred ccccEEEccccccccccchhccCC--CCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCC-CCccccCCccccE
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNL--VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGE-IPSSVGNLTLLFT 291 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~ 291 (488)
..++.++++++.+. +..+..+ ++++.|+++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 35888999888765 4455666 8899999999988765554 45689999999999987644 5666788999999
Q ss_pred EecCCCccCCCCCccccCCCCCcEEEccCC-cCccc-cchhhhcccCceeEEEccCC-ccccc-CCccccCCC-CccEEE
Q 041473 292 LSFEGNRLEGSIPSSLGKCKNLILLDLSNN-NLTGT-IPTEVIGLSSLSIYLDLSKN-QLNGP-LPSNFGILK-NLGVLD 366 (488)
Q Consensus 292 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~ 366 (488)
|++++|.+.+..+..+..+++|++|++++| .+++. ++..+..++.+ ++|++++| .+.+. .+..+..++ +|++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L-~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL-DELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC-CEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC-CEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 999999887667778888999999999999 56643 56667777777 89999999 87743 456677888 999999
Q ss_pred ccCCc--cc-CCCccccccCCCCCEEecCCcc-ccccCcccccCCCCCCEEeccCcc-cCCccchhhhccccCceeeccC
Q 041473 367 VSENK--LS-GEIPNSLGSCVRLEQLVMNGNF-FQGNIPSSFSSLRGIQNLDLSRNN-LSGRIPKYFENFFFLQNLNLSS 441 (488)
Q Consensus 367 l~~n~--l~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~ 441 (488)
+++|. ++ ..++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 99994 44 3556677789999999999998 666677788889999999999995 3333334678899999999999
Q ss_pred cccccccCCcccc-CCcceeeecCCCCc
Q 041473 442 NHFEGEVPIKGVF-SNSSAISLDGNDNL 468 (488)
Q Consensus 442 n~~~~~~~~~~~~-~~L~~l~l~~n~~~ 468 (488)
| ++. .....+ ..++.|++++|...
T Consensus 282 ~-i~~--~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 282 I-VPD--GTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp S-SCT--TCHHHHHHHSTTSEESCCCSC
T ss_pred c-cCH--HHHHHHHhhCcceEEecccCc
Confidence 9 332 112223 45777778777543
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=172.89 Aligned_cols=203 Identities=21% Similarity=0.170 Sum_probs=131.0
Q ss_pred ccccEEEccccccccccchhc--cCCCCCCEEEccCCcCCCCcc----ccccCCCCccEEEcccccccCCCCccccCCcc
Q 041473 215 TRLKRFTVGNNQLFGNIPSGL--GNLVNLELLDLGDNQFTGRIL----GSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTL 288 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~L~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 288 (488)
++|++|++++|.+....|..+ ..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 469999999999888777777 889999999999999875332 34456899999999999998777788999999
Q ss_pred ccEEecCCCccCCC----CCccccCCCCCcEEEccCCcCccccchh----hhcccCceeEEEccCCcccccCCccccCCC
Q 041473 289 LFTLSFEGNRLEGS----IPSSLGKCKNLILLDLSNNNLTGTIPTE----VIGLSSLSIYLDLSKNQLNGPLPSNFGILK 360 (488)
Q Consensus 289 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~ 360 (488)
|++|++++|.+.+. .+..+..+++|++|++++|.++ .++.. +..++.+ ++|++++|.+.+..|..+..+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L-~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQP-HSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCC-SSEECTTSCCCCCCCSCCSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCC-CEEECCCCCCCccchhhHHhcc
Confidence 99999999987532 1233467889999999999886 33332 1222333 4455555554433333333321
Q ss_pred CccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeecc
Q 041473 361 NLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLS 440 (488)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 440 (488)
.+++|++|++++|+++ ..|..+. ++|+.|++++|++++. |. +..+++|+.|+++
T Consensus 249 ---------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~ 302 (310)
T 4glp_A 249 ---------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLD 302 (310)
T ss_dssp ---------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECS
T ss_pred ---------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECc
Confidence 0135555555555554 2233222 4555555555555532 21 3445555555555
Q ss_pred Ccccc
Q 041473 441 SNHFE 445 (488)
Q Consensus 441 ~n~~~ 445 (488)
+|+++
T Consensus 303 ~N~l~ 307 (310)
T 4glp_A 303 GNPFL 307 (310)
T ss_dssp STTTS
T ss_pred CCCCC
Confidence 55554
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=3e-20 Score=174.07 Aligned_cols=245 Identities=20% Similarity=0.177 Sum_probs=149.1
Q ss_pred cEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCC-ccccCCccccE-EecC
Q 041473 218 KRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIP-SSVGNLTLLFT-LSFE 295 (488)
Q Consensus 218 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~-L~l~ 295 (488)
+.++.+++.++ .+|..+ .+++++|++++|.+......+|.++++|++|++++|.+.+.++ ..|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34444555554 234333 3466777777777765555566777777777777776654333 34566666554 3444
Q ss_pred CCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccC-CcccccCCccccCCC-CccEEEccCCccc
Q 041473 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSK-NQLNGPLPSNFGILK-NLGVLDVSENKLS 373 (488)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~-~~~~~~~~~~~~~l~-~L~~L~l~~n~l~ 373 (488)
.|.+....+.+|..+++|++|++++|.+....+..+.....+ ..+++.+ +.+....+..|..+. .++.|++++|.++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l-~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK-VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSC-EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchh-hhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 566665556667777777777777777663333333333343 5666654 345544445555543 5777888888877
Q ss_pred CCCccccccCCCCCEEecCC-ccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCcc
Q 041473 374 GEIPNSLGSCVRLEQLVMNG-NFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKG 452 (488)
Q Consensus 374 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 452 (488)
.++.......+|+++++.+ |.++.+.+++|.++++|+.|++++|+++...+..| .+|+.|.+.+|.....+|...
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTT
T ss_pred -CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCch
Confidence 4444444556778888764 56665555677788888888888888774444333 455555555555555677777
Q ss_pred ccCCcceeeecCCCCcccc
Q 041473 453 VFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 453 ~~~~L~~l~l~~n~~~c~~ 471 (488)
.+++|+.+++++ |+.|.+
T Consensus 244 ~l~~L~~l~l~~-~~~c~~ 261 (350)
T 4ay9_X 244 KLVALMEASLTY-PSHCCA 261 (350)
T ss_dssp TCCSCCEEECSC-HHHHHH
T ss_pred hCcChhhCcCCC-Cccccc
Confidence 778888887753 455443
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=1.4e-19 Score=157.44 Aligned_cols=179 Identities=21% Similarity=0.273 Sum_probs=134.1
Q ss_pred cEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccC
Q 041473 290 FTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSE 369 (488)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 369 (488)
+.++++++.++ .+|..+. ++++.|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L-~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKL-RRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTC-CEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCC-CEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 56778777777 4555444 678888888888885555566666666 7888888888877788888888888888888
Q ss_pred CcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccC
Q 041473 370 NKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 370 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
|.++...+..|..+++|++|++++|.+....+..|.++++|+.|++++|.++...+..|..+++|+.|++++|++.+.++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 88885545557788888888888888887777888888888888888888887777778888888888888888887776
Q ss_pred CccccCCcceeeecCCCCccccc
Q 041473 450 IKGVFSNSSAISLDGNDNLCGGI 472 (488)
Q Consensus 450 ~~~~~~~L~~l~l~~n~~~c~~~ 472 (488)
..+....++.-.+......|.+-
T Consensus 170 l~~l~~~l~~~~~~~~~~~C~~P 192 (220)
T 2v9t_B 170 LKWLADYLHTNPIETSGARCTSP 192 (220)
T ss_dssp GHHHHHHHHHCCCBCSCCBEEES
T ss_pred cHHHHHHHHhCCCCccCCCcCCc
Confidence 54444333333334444556653
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=156.80 Aligned_cols=177 Identities=21% Similarity=0.242 Sum_probs=132.6
Q ss_pred cEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccch-hhhcccCceeEEEccCCcccccCCccccCCCCccEEEcc
Q 041473 290 FTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPT-EVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVS 368 (488)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 368 (488)
+.++++++.++ .+|..+. +.+++|++++|.+++..+. .+..++.+ ++|++++|.+.+..+..|..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L-~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQL-RKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCC-CEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 35666666665 3444433 3456777777777644332 34555555 777777777776666788888999999999
Q ss_pred CCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccccc
Q 041473 369 ENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEV 448 (488)
Q Consensus 369 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 448 (488)
+|.++...+..|..+++|++|++++|.+....+..|.++++|++|++++|.+++..|..|..+++|+.|++++|++.+.+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99998777777888999999999999999888888999999999999999999888889999999999999999999888
Q ss_pred CCccccCCcceeee-cCCCCcccc
Q 041473 449 PIKGVFSNSSAISL-DGNDNLCGG 471 (488)
Q Consensus 449 ~~~~~~~~L~~l~l-~~n~~~c~~ 471 (488)
+..+....++.-.+ .+++ .|+.
T Consensus 170 ~l~~l~~~~~~~~~~~~~~-~C~~ 192 (220)
T 2v70_A 170 YLAWLGEWLRKKRIVTGNP-RCQK 192 (220)
T ss_dssp GGHHHHHHHHHSCCBCCCC-EEEE
T ss_pred chHHHHHHHHhcCccccCC-ccCC
Confidence 76555444443333 3443 6665
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.7e-19 Score=155.55 Aligned_cols=134 Identities=28% Similarity=0.319 Sum_probs=69.8
Q ss_pred ccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEE
Q 041473 287 TLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLD 366 (488)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 366 (488)
+++++|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..++.+ ++|++++|.+....+..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-NSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-CEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-CEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 455555555555554444445555555555555555554444445444444 5555555555544444445555555555
Q ss_pred ccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC
Q 041473 367 VSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 367 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 421 (488)
+++|.++...+..|..+++|+.|++++|.++...+..|..+++|+.|++++|++.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5555555444445555555555555555555444444555555555555555544
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=153.24 Aligned_cols=155 Identities=19% Similarity=0.245 Sum_probs=137.2
Q ss_pred CcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCC-ccccCCCCccEEEccCCcccCCCccccccCCCCCEEec
Q 041473 313 LILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLP-SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391 (488)
Q Consensus 313 L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 391 (488)
-+.++++++.++ .+|..+. ...++|++++|.+.+..+ ..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 358999999988 6776553 333799999999997644 56889999999999999999776778999999999999
Q ss_pred CCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccC-CccccCCcceeeecCCCCccc
Q 041473 392 NGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP-IKGVFSNSSAISLDGNDNLCG 470 (488)
Q Consensus 392 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~c~ 470 (488)
++|.++...+..|.++++|++|++++|++++..|..|.++++|++|++++|.+++..| ....+++|+.|++++||+.|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9999998888899999999999999999998889999999999999999999997655 567799999999999999997
Q ss_pred c
Q 041473 471 G 471 (488)
Q Consensus 471 ~ 471 (488)
+
T Consensus 169 c 169 (220)
T 2v70_A 169 C 169 (220)
T ss_dssp G
T ss_pred C
Confidence 6
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=4e-19 Score=167.07 Aligned_cols=182 Identities=23% Similarity=0.203 Sum_probs=136.6
Q ss_pred ccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCcccc-CCCCCcEEEccCCcCccccchhhhcccCceeEEEc
Q 041473 265 LQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLG-KCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDL 343 (488)
Q Consensus 265 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l 343 (488)
-+.++++++.+. .+|..+ .+.++.|++++|.+++..+..+. .+++|+.|++++|.+.+..+..+..++.+ ++|++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL-RYLDL 95 (361)
T ss_dssp TTEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEEC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC-CEEEC
Confidence 357888888776 344433 35688888888888866666676 78888888888888885555667777766 78888
Q ss_pred cCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccc---cCCCCCCEEeccCccc
Q 041473 344 SKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSF---SSLRGIQNLDLSRNNL 420 (488)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~~ 420 (488)
++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++++|.++...+..| ..+++|+.|+|++|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 8888876667778888888888888888886667778888888888888888886555556 4578888888888888
Q ss_pred CCccchhhhcccc--CceeeccCcccccccCC
Q 041473 421 SGRIPKYFENFFF--LQNLNLSSNHFEGEVPI 450 (488)
Q Consensus 421 ~~~~~~~l~~l~~--L~~L~l~~n~~~~~~~~ 450 (488)
+...+..+..++. ++.|++++|++.+.+..
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred CccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 8666677777776 47788888888876653
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=3.1e-18 Score=147.97 Aligned_cols=154 Identities=24% Similarity=0.215 Sum_probs=86.8
Q ss_pred cccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEc
Q 041473 288 LLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDV 367 (488)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 367 (488)
++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL-TYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc-CEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 44444444444443333334444444444444444442222222333333 44445545444344444566667777777
Q ss_pred cCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccc
Q 041473 368 SENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 368 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
++|.++...+..|..+++|+.|++++|.++...+..+..+++|++|++++|++.. .+++|++|++++|.+++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 7777764444556667777777777777765555566777777777777776552 345677777777777766
Q ss_pred cC
Q 041473 448 VP 449 (488)
Q Consensus 448 ~~ 449 (488)
+|
T Consensus 181 ip 182 (208)
T 2o6s_A 181 VR 182 (208)
T ss_dssp BB
T ss_pred ee
Confidence 66
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=2.3e-18 Score=148.73 Aligned_cols=170 Identities=22% Similarity=0.192 Sum_probs=118.8
Q ss_pred CCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEE
Q 041473 263 QKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLD 342 (488)
Q Consensus 263 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~ 342 (488)
+++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..++.+ ++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL-KELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC-CEEE
Confidence 456666666666664444455666666666666666665555555666777777777776663333334555555 6777
Q ss_pred ccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCC
Q 041473 343 LSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSG 422 (488)
Q Consensus 343 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 422 (488)
+++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+. ..+++|+.|++..|.+++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCc
Confidence 7777776556666778888999999999888555556788899999999998665 356789999999999998
Q ss_pred ccchhhhccccCceeeccCccc
Q 041473 423 RIPKYFENFFFLQNLNLSSNHF 444 (488)
Q Consensus 423 ~~~~~l~~l~~L~~L~l~~n~~ 444 (488)
.+|..++.++. ++..|..
T Consensus 180 ~ip~~~~~l~~----~~~~C~~ 197 (208)
T 2o6s_A 180 VVRNSAGSVAP----DSAKCSG 197 (208)
T ss_dssp TBBCTTSSBCT----TCSBBTT
T ss_pred eeeccCccccC----Ccccccc
Confidence 89988876655 4444543
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.6e-18 Score=150.48 Aligned_cols=156 Identities=26% Similarity=0.302 Sum_probs=115.0
Q ss_pred ccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEcc
Q 041473 289 LFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVS 368 (488)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 368 (488)
.+.++++++.+. .+|..+. ++|+.|++++|.+.+..+..+..++.+ ++|++++|.+....+..|..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINL-KELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCC-cEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456777777766 4554443 678888888888876666667677666 788888888775556667777888888888
Q ss_pred CCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccccc
Q 041473 369 ENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEV 448 (488)
Q Consensus 369 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 448 (488)
+|.++...+..|..+++|++|++++|.+. ..|..+..+++|+.|++++|+++...+..|..+++|+.|++++|++.+.+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 88887555556677788888888888877 55666677788888888888877666667777788888888888887766
Q ss_pred C
Q 041473 449 P 449 (488)
Q Consensus 449 ~ 449 (488)
+
T Consensus 176 ~ 176 (229)
T 3e6j_A 176 R 176 (229)
T ss_dssp G
T ss_pred c
Confidence 5
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.2e-18 Score=156.78 Aligned_cols=173 Identities=24% Similarity=0.313 Sum_probs=142.9
Q ss_pred ccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCce
Q 041473 259 IGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLS 338 (488)
Q Consensus 259 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 338 (488)
+..+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++ .+..++.+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L- 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLS-SLKDLKKL- 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGG-GGTTCTTC-
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CCh-hhccCCCC-
Confidence 45678999999999988744 3 37889999999999999985544 888999999999999987 444 36667777
Q ss_pred eEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+....+ +..+++|+.|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 8999999998853 4677889999999999998843 578889999999999999886544 888999999999999
Q ss_pred ccCCccchhhhccccCceeeccCccccc
Q 041473 419 NLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 419 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
.++.. + .+..+++|+.|++++|+++.
T Consensus 189 ~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 98854 3 48889999999999998875
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=8.4e-18 Score=157.44 Aligned_cols=222 Identities=20% Similarity=0.197 Sum_probs=164.2
Q ss_pred ccccEEEccccccccccchhccCCCCCCEEEccCCcCCC-CccccccCCCCccE-EEcccccccCCCCccccCCccccEE
Q 041473 215 TRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTG-RILGSIGDLQKLQR-LRLKGNKFLGEIPSSVGNLTLLFTL 292 (488)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~-L~l~~~~~~~~~~~~~~~~~~L~~L 292 (488)
+++++|++++|.++...+..|.++++|++|+|++|.+.+ .....|.+++++++ +.+.+|.+....+..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 578899999998886666678899999999999998754 34456788888765 4556677876667788899999999
Q ss_pred ecCCCccCCCCCccccCCCCCcEEEccCC-cCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccC-C
Q 041473 293 SFEGNRLEGSIPSSLGKCKNLILLDLSNN-NLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSE-N 370 (488)
Q Consensus 293 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-n 370 (488)
++++|.+....+..+....++..+++.++ .+....+..+......+++|++++|.+....+..|. ..+|+++++.+ |
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCC
Confidence 99999888666666666777888888765 455333344555555457899999998855555554 46789999975 5
Q ss_pred cccCCCc-cccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCc
Q 041473 371 KLSGEIP-NSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442 (488)
Q Consensus 371 ~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 442 (488)
.++ .+| ..|.++++|++|++++|+++...+.. +.+|+.|.+.++.-.+.+| .+..+++|+.+++.++
T Consensus 189 ~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 189 NLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ccc-CCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 666 554 56888999999999999988655444 4556677766665554666 4778889999988754
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=3.6e-18 Score=160.58 Aligned_cols=177 Identities=22% Similarity=0.140 Sum_probs=131.3
Q ss_pred CEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCcccc-CCccccEEecCCCccCCCCCccccCCCCCcEEEccC
Q 041473 242 ELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVG-NLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSN 320 (488)
Q Consensus 242 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 320 (488)
+.++++++.+... +..+. +.++.|++++|.+....+..+. .+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSC-CSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcc-CccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 5778887777643 33332 4578888888888766666666 788888888888888866667788888888888888
Q ss_pred CcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCcccc---ccCCCCCEEecCCcccc
Q 041473 321 NNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSL---GSCVRLEQLVMNGNFFQ 397 (488)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~ 397 (488)
|.+....+..+..+..+ ++|++++|.+....+..|..+++|++|++++|.++...+..| ..+++|+.|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L-~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQAL-EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCC-CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 88875555556666666 788888888887777788888888888888888884333334 46788888888888888
Q ss_pred ccCcccccCCCC--CCEEeccCcccCC
Q 041473 398 GNIPSSFSSLRG--IQNLDLSRNNLSG 422 (488)
Q Consensus 398 ~~~~~~~~~l~~--L~~L~l~~n~~~~ 422 (488)
...+..+..++. ++.|++++|++..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 666667777776 4788888888763
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.2e-17 Score=146.16 Aligned_cols=155 Identities=23% Similarity=0.242 Sum_probs=119.0
Q ss_pred CccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEc
Q 041473 264 KLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDL 343 (488)
Q Consensus 264 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l 343 (488)
..+.++.+++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..++.+ ++|++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L-~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL-TVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEEC
T ss_pred eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc-CEEEC
Confidence 4567777777766 344333 3788888888888887777778888888888888888873333445566666 78888
Q ss_pred cCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCc
Q 041473 344 SKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR 423 (488)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 423 (488)
++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|.+....+..|..+++|+.|++++|++...
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 888888666677788888888888888888 7777788888888888888888866667788888888888888887744
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.2e-17 Score=151.94 Aligned_cols=194 Identities=21% Similarity=0.302 Sum_probs=156.3
Q ss_pred cEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCC
Q 041473 218 KRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGN 297 (488)
Q Consensus 218 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (488)
..+.+....+.+.. .+..+++|++|+++++.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 27 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 27 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHHhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 33444454444322 245688999999999988754 347889999999999999885544 889999999999999
Q ss_pred ccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCc
Q 041473 298 RLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIP 377 (488)
Q Consensus 298 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 377 (488)
.+.+ ...+..+++|++|++++|.+.+ + ..+..++.+ ++|++++|.+.+. ..+..+++|++|++++|.+++..+
T Consensus 101 ~l~~--~~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L-~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 101 KVKD--LSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CCCC--GGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTC-CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred cCCC--ChhhccCCCCCEEECCCCcCCC-C-hhhcCCCCC-CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 9874 3448899999999999999984 4 356677777 8999999999854 578889999999999999985444
Q ss_pred cccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhh
Q 041473 378 NSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYF 428 (488)
Q Consensus 378 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 428 (488)
+..+++|+.|++++|.+++. + .+..+++|+.|++++|++.......+
T Consensus 174 --l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~~~~~ 220 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPINHQ 220 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCCEECC
T ss_pred --hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCccccc
Confidence 88999999999999999854 3 48899999999999999986544333
No 109
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=5.3e-18 Score=144.11 Aligned_cols=154 Identities=27% Similarity=0.367 Sum_probs=103.3
Q ss_pred cEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCc-cccCCCCccEEEccCCcccCCCccccccCCCCCEEecC
Q 041473 314 ILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPS-NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMN 392 (488)
Q Consensus 314 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 392 (488)
+.++++++.++ .+|..+.. .+ ++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l-~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TC-SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CC-CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 45555555554 44443322 22 5666666666544432 36677777777777777776667777777777777777
Q ss_pred CccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCcccc
Q 041473 393 GNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 393 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
+|.++...+..|.++++|++|++++|++++..|..|..+++|++|++++|++.+.++..+....++...+.++...|+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA 165 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCC
Confidence 7777766667777777788888888877777777777777788888888887777765555555555556666666655
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=4.9e-17 Score=160.03 Aligned_cols=186 Identities=26% Similarity=0.321 Sum_probs=82.7
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecC
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE 295 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 295 (488)
+++.|+++++.++. +|..+ +++|++|++++|.+... + ..+++|++|++++|.+.. +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 45555555555543 33322 24555555555555422 2 223455555555555543 333 322 55555555
Q ss_pred CCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCC
Q 041473 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGE 375 (488)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 375 (488)
+|.+++ +|. .+++|+.|++++|.++ .+|. .++.+ ++|++++|.+.+ +|. +. ++|++|++++|.++ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLT-MLPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccC-cCCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 555543 332 3445555555555554 2333 12222 445555555443 332 32 44555555555544 3
Q ss_pred CccccccCCCC-------CEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhc
Q 041473 376 IPNSLGSCVRL-------EQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFEN 430 (488)
Q Consensus 376 ~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 430 (488)
+|. +.. +| +.|++++|.++. +|..+..+++|+.|++++|++++.+|..+..
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 333 222 33 444444444442 3333333444444444444444444444433
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=4.5e-17 Score=160.32 Aligned_cols=182 Identities=25% Similarity=0.350 Sum_probs=146.2
Q ss_pred CCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEc
Q 041473 239 VNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDL 318 (488)
Q Consensus 239 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 318 (488)
.+++.|+++++.+.+ .+..+ +++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 389999999998876 33333 378999999999988 455 457999999999999986 665 554 8999999
Q ss_pred cCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccc
Q 041473 319 SNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQG 398 (488)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 398 (488)
++|.+++ +|. .++.+ ++|++++|.+.+ +|. .+++|++|++++|.++. +|. +. ++|+.|++++|.++
T Consensus 128 s~N~l~~-lp~---~l~~L-~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALL-EYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCcCCC-CCC---cCccc-cEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 9999984 666 34555 899999999985 554 56899999999999984 776 65 89999999999998
Q ss_pred cCcccccCCCCC-------CEEeccCcccCCccchhhhccccCceeeccCcccccccC
Q 041473 399 NIPSSFSSLRGI-------QNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP 449 (488)
Q Consensus 399 ~~~~~~~~l~~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 449 (488)
.+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++..|
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 4454 543 66 99999999999 577778789999999999999987655
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=8.2e-18 Score=167.50 Aligned_cols=189 Identities=23% Similarity=0.287 Sum_probs=154.5
Q ss_pred CCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccC
Q 041473 241 LELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSN 320 (488)
Q Consensus 241 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 320 (488)
+..+.+..+.+... ..+..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~--~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSE--ECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccc--cchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 34445555555432 2345678999999999988743 3 47889999999999999986544 88899999999999
Q ss_pred CcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccC
Q 041473 321 NNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNI 400 (488)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 400 (488)
|.+. .++ .+..++.+ ++|++++|.+.+. ..+..+++|+.|+|++|.++.. ..+..+++|+.|++++|.+....
T Consensus 97 N~l~-~l~-~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 97 NKIK-DLS-SLKDLKKL-KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SCCC-CCT-TSTTCTTC-CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCC-CCh-hhccCCCC-CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 9987 444 56677777 8999999999853 4588899999999999999844 57888999999999999998655
Q ss_pred cccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 401 PSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 401 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
+ +..+++|+.|+|++|+++.. ..+..+++|+.|++++|+++.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 5 88999999999999999864 368899999999999999875
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.2e-17 Score=141.06 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=80.7
Q ss_pred cCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCcc
Q 041473 284 GNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLG 363 (488)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~ 363 (488)
..+++|++|++++|.+. .++ .+..+++|++|++++|.+. .++ . +..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-------------------------l~~l~~L~ 91 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-------------------------ISGLSNLE 91 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-------------------------GTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-------------------------hhcCCCCC
Confidence 45666777777777666 333 4566666777777666443 221 2 33445555
Q ss_pred EEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcc-cCCccchhhhccccCceeeccCc
Q 041473 364 VLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNN-LSGRIPKYFENFFFLQNLNLSSN 442 (488)
Q Consensus 364 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n 442 (488)
+|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|. +. .++ .+..+++|++|++++|
T Consensus 92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp EEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTB
T ss_pred EEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCC
Confidence 55555555554444455555555555555555554444555555555555555555 33 233 3555555555555555
Q ss_pred ccccccCCccccCCcceeeecCCC
Q 041473 443 HFEGEVPIKGVFSNSSAISLDGND 466 (488)
Q Consensus 443 ~~~~~~~~~~~~~~L~~l~l~~n~ 466 (488)
+++. ++....+++|+.|++++|+
T Consensus 170 ~i~~-~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 170 GVHD-YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCCC-CTTGGGCSSCCEEEECBC-
T ss_pred CCcC-hHHhccCCCCCEEEeeCcc
Confidence 5542 3344445555555555554
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.9e-17 Score=140.35 Aligned_cols=153 Identities=14% Similarity=0.188 Sum_probs=105.2
Q ss_pred cCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCcee
Q 041473 260 GDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSI 339 (488)
Q Consensus 260 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 339 (488)
..+++|+.|++++|.+. ..+ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~--------- 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPN--------- 107 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCC---------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChh---------
Confidence 56789999999999988 444 5888999999999999765 4457888999999999999877434433
Q ss_pred EEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCcc-ccccCcccccCCCCCCEEeccCc
Q 041473 340 YLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNF-FQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 340 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
+..+++|++|++++|.+++..+..+..+++|++|++++|. +.+ .+ .+.++++|+.|++++|
T Consensus 108 ----------------l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 108 ----------------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp ----------------CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTB
T ss_pred ----------------hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCC
Confidence 3445566666666666665555556666666666666665 442 33 4566667777777777
Q ss_pred ccCCccchhhhccccCceeeccCcccc
Q 041473 419 NLSGRIPKYFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 419 ~~~~~~~~~l~~l~~L~~L~l~~n~~~ 445 (488)
.++.. + .+..+++|++|++++|++.
T Consensus 170 ~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 170 GVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred CCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 66642 2 5666677777777777654
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.4e-17 Score=149.04 Aligned_cols=170 Identities=19% Similarity=0.218 Sum_probs=135.9
Q ss_pred CCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEE
Q 041473 262 LQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYL 341 (488)
Q Consensus 262 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L 341 (488)
+.+++.+++.++.+.+.. .+..+++|++|++++|.+.. .+ .+..+++|++|++++|.+. .++. +..++.+ ++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L-~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKL-EEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSC-CEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCCCC-CEE
Confidence 456777788888776443 46788999999999998873 44 6788899999999999988 4444 6777777 899
Q ss_pred EccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC
Q 041473 342 DLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 342 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 421 (488)
++++|.+.+. +. +.. ++|++|++++|.+++ ++ .+..+++|++|++++|++++. + .+..+++|+.|++++|+++
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 9999998853 32 223 889999999999884 43 588899999999999998854 3 6788899999999999998
Q ss_pred CccchhhhccccCceeeccCcccccc
Q 041473 422 GRIPKYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 422 ~~~~~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
+. ..+..+++|+.|++++|++++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 66 6788889999999999998754
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=4.7e-17 Score=162.03 Aligned_cols=176 Identities=23% Similarity=0.347 Sum_probs=122.3
Q ss_pred ccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCc
Q 041473 235 LGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLI 314 (488)
Q Consensus 235 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 314 (488)
+..+++|+.|+++++.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+ . ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence 34566677777777766533 245667777777777777664433 6677777777777777763 2 2566777777
Q ss_pred EEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCc
Q 041473 315 LLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGN 394 (488)
Q Consensus 315 ~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 394 (488)
.|++++|.+.+ ++ .+..++.+ +.|++++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|++++|
T Consensus 113 ~L~Ls~N~l~~-l~-~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHNGISD-IN-GLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTSCCCC-CG-GGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEEecCCCCCC-Cc-cccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 77777777763 33 35556666 6777777777643 467778888888888888875444 778888888888888
Q ss_pred cccccCcccccCCCCCCEEeccCcccCCccc
Q 041473 395 FFQGNIPSSFSSLRGIQNLDLSRNNLSGRIP 425 (488)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 425 (488)
.+... ..+..+++|+.|+|++|++.....
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 88753 357788888888888888875433
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=2.2e-17 Score=153.28 Aligned_cols=295 Identities=10% Similarity=0.044 Sum_probs=143.9
Q ss_pred ccCcccccC--CccCcEEeccCCCCCCCcCccccC-Ccccccccccccccc--cccchhhcCCCCccEEEeecccccccc
Q 041473 6 GKVPGKLGS--LSKLRTLAVHFNNLSGEIPSSFGN-LSSLEFLSAAVNQFV--GQIPETLSELKRMRSIGFGANKLSGEI 80 (488)
Q Consensus 6 ~~l~~~l~~--~~~L~~L~l~~~~l~~~~~~~~~~-l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~~~ 80 (488)
|.++..+.. +++++.|.++++ +.......+.. +++|+.|++++|.+. ......+ +.++.+.+..+.+ .
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~ 85 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---P 85 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---C
T ss_pred CcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---C
Confidence 444444443 566777777664 22111122333 666777777777765 2222222 2245555555533 2
Q ss_pred chhhhc--------cCCCcEEecccCCcCCCCCcchhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCC---
Q 041473 81 PFSIYN--------LSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGF--- 149 (488)
Q Consensus 81 ~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--- 149 (488)
...|.+ +++|+.+++.+ .++ .++...+..+++|+.+++.++.+....+..|..+.++..+.......
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~ 163 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF 163 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT
T ss_pred HHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc
Confidence 445556 77777777777 666 66666666777777777777776655566666666666555443211
Q ss_pred -c-cCCCCcccccccc-eeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCchhhhhhhccccEEEccccc
Q 041473 150 -S-GKVPSLENLYKLQ-RVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQ 226 (488)
Q Consensus 150 -~-~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 226 (488)
. .....+..+..|+ .+.+..... . .......-.....+..+.+.+.-.. .....+...+++|+++++.++.
T Consensus 164 ~~~i~~~~f~~~~~L~~~i~~~~~~~--l---~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 164 KNRWEHFAFIEGEPLETTIQVGAMGK--L---EDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp STTTTTSCEEESCCCEEEEEECTTCC--H---HHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBC
T ss_pred cccccccccccccccceeEEecCCCc--H---HHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCC
Confidence 0 0111133333333 222211100 0 0000111111222333333322111 1111112223456666666555
Q ss_pred cccccchhccCCCCCCEEEccCCcCCCCccccccCCCCcc-EEEcccccccCCCCccccCCccccEEecCCCccCCCCCc
Q 041473 227 LFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQ-RLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPS 305 (488)
Q Consensus 227 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 305 (488)
++...+..|.++.+|+++++.++ +..+...+|.++.+|+ .+.+.+ .+....+..|.+|++|+.++++.+.+....+.
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh
Confidence 55444555555666666666554 4444455555555565 666655 34434445555566666666555555544555
Q ss_pred cccCCCCCcEEE
Q 041473 306 SLGKCKNLILLD 317 (488)
Q Consensus 306 ~~~~~~~L~~L~ 317 (488)
+|.++++|+.++
T Consensus 316 aF~~~~~L~~ly 327 (329)
T 3sb4_A 316 LFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTCCCCEEE
T ss_pred hhcCCcchhhhc
Confidence 555555555554
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=135.67 Aligned_cols=155 Identities=21% Similarity=0.293 Sum_probs=105.1
Q ss_pred cEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCC
Q 041473 314 ILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNG 393 (488)
Q Consensus 314 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 393 (488)
+.++++++.++ .+|..+. ..+ ++|++++|.+. .+|..|..+++|++|++++|.++...+..|.++++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l-~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDV-TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTC-CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCC-CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 56777777776 5665432 233 67778877777 5556777777788888888877766666677777888888888
Q ss_pred ccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCccccCCcceeeecCCCCcccccc
Q 041473 394 NFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVFSNSSAISLDGNDNLCGGIS 473 (488)
Q Consensus 394 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~~~ 473 (488)
|.++...+..|.++++|+.|++++|.++...+..|..+++|+.|++++|++.+.+...+....++..........|.+-+
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~ 167 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPG 167 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESG
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCch
Confidence 87776666777777788888888887776666667777778888888887777666444433333322333334565533
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=5.1e-17 Score=150.76 Aligned_cols=217 Identities=12% Similarity=0.067 Sum_probs=128.0
Q ss_pred CCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCc----cCCCCCccccCCCCC
Q 041473 238 LVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNR----LEGSIPSSLGKCKNL 313 (488)
Q Consensus 238 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~L 313 (488)
+++|+++++.+ .+..+...+|.++++|+.+++.+|.+....+..|..+.++..+...... .......+|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 88888888887 6766677778888888888888887766666777777777777665532 222344556666676
Q ss_pred c-EEEccCCcCccccchhhhc----ccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCE
Q 041473 314 I-LLDLSNNNLTGTIPTEVIG----LSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQ 388 (488)
Q Consensus 314 ~-~L~l~~~~~~~~~~~~~~~----~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 388 (488)
+ .+.+.... .++..+.. .... ..+.+.+.-...........+++|+++++++|.++...+.+|.+|++|++
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~-~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDI-NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGC-SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ceeEEecCCC---cHHHHHhhcccCcccc-ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 6 44444332 22222221 1111 23333332111000001112566777777777666455556777777777
Q ss_pred EecCCccccccCcccccCCCCCC-EEeccCcccCCccchhhhccccCceeeccCcccccccC-CccccCCcceee
Q 041473 389 LVMNGNFFQGNIPSSFSSLRGIQ-NLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVP-IKGVFSNSSAIS 461 (488)
Q Consensus 389 L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~ 461 (488)
+++.+| +..+...+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+++++|.++..-+ .....++|+.++
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 777766 5556666777777777 777776 5655566677777777777777766653222 344455555543
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=5.7e-17 Score=144.96 Aligned_cols=174 Identities=25% Similarity=0.309 Sum_probs=143.4
Q ss_pred CCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEE
Q 041473 237 NLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILL 316 (488)
Q Consensus 237 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 316 (488)
.+.++..++++++.+.+.. .+..+++|+.|++++|.+.. .+ .+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3456677788888877433 56788999999999998874 44 58889999999999999985544 8899999999
Q ss_pred EccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccc
Q 041473 317 DLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFF 396 (488)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 396 (488)
++++|.++ .++.... ..+ ++|++++|.+.+. ..+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+
T Consensus 91 ~L~~N~l~-~l~~~~~--~~L-~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 91 SVNRNRLK-NLNGIPS--ACL-SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp ECCSSCCS-CCTTCCC--SSC-CEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCC
T ss_pred ECCCCccC-CcCcccc--Ccc-cEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcC
Confidence 99999998 4554332 455 8999999999853 358889999999999999984 44 688899999999999999
Q ss_pred cccCcccccCCCCCCEEeccCcccCCccch
Q 041473 397 QGNIPSSFSSLRGIQNLDLSRNNLSGRIPK 426 (488)
Q Consensus 397 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 426 (488)
.+. ..+..+++|+.|++++|++......
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred cch--HHhccCCCCCEEeCCCCcccCCccc
Confidence 865 6788999999999999999865433
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=133.97 Aligned_cols=128 Identities=22% Similarity=0.273 Sum_probs=73.6
Q ss_pred EEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcc
Q 041473 340 YLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNN 419 (488)
Q Consensus 340 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 419 (488)
+++++++.+. .+|..+. ++|++|++++|.++ .+|..|..+++|+.|++++|.++...+..|.++++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4555555555 3333322 45666666666665 555556666666666666666665555556666666666666666
Q ss_pred cCCccchhhhccccCceeeccCcccccccC-CccccCCcceeeecCCCCcccc
Q 041473 420 LSGRIPKYFENFFFLQNLNLSSNHFEGEVP-IKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 420 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
++...+..|.++++|+.|++++|.++...+ ....+++|+.|++++|||.|++
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 665555556666666666666666653332 2344556666666666666544
No 122
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.66 E-value=6e-15 Score=140.41 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=33.8
Q ss_pred ccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCCCcEEEc
Q 041473 53 VGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPNLEVLNF 120 (488)
Q Consensus 53 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 120 (488)
+.+...+|.++.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++ .++...+..+..|+.+.+
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILL 124 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCC
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-Eccchhhcccccchhhcc
Confidence 3344555666666666666532 44344455566666666666543 33 444444444555555444
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=2.9e-18 Score=169.73 Aligned_cols=192 Identities=23% Similarity=0.207 Sum_probs=133.1
Q ss_pred CCCccEEEcccccccCCCCccccCCccccEEecCCCc-------------cCCCCCccccCCCCCcEEE-ccCCcCcccc
Q 041473 262 LQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNR-------------LEGSIPSSLGKCKNLILLD-LSNNNLTGTI 327 (488)
Q Consensus 262 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~~~ 327 (488)
.++|+.|++++|.+. .+|..++.+++|++|++++|. ..+..|..+..+++|+.|+ ++.+.+. .+
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DL 425 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hh
Confidence 445555555555544 344445555555555554332 2223344455555566655 3333222 11
Q ss_pred ch------hhhc--ccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCcccccc
Q 041473 328 PT------EVIG--LSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGN 399 (488)
Q Consensus 328 ~~------~~~~--~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 399 (488)
+. .+.. ...+ ++|++++|.+.+ +|. +..+++|++|++++|.++ .+|..+..+++|+.|++++|.++.
T Consensus 426 ~~l~l~~n~i~~l~~~~L-~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADV-RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHTTC-SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhcccccccCccCc-eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 10 0000 1123 789999999985 565 888999999999999999 889999999999999999999985
Q ss_pred CcccccCCCCCCEEeccCcccCCcc-chhhhccccCceeeccCcccccccCCcc----ccCCcceee
Q 041473 400 IPSSFSSLRGIQNLDLSRNNLSGRI-PKYFENFFFLQNLNLSSNHFEGEVPIKG----VFSNSSAIS 461 (488)
Q Consensus 400 ~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~----~~~~L~~l~ 461 (488)
.| .+.++++|+.|++++|.+++.. |..+..+++|+.|++++|++++..|... .+++|+.|+
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 55 7889999999999999999776 8999999999999999999987666433 266777764
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1.5e-15 Score=128.96 Aligned_cols=174 Identities=22% Similarity=0.317 Sum_probs=123.8
Q ss_pred cEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccch-hhhcccCceeEEEccCCcccccCCccccCCCCccEEEcc
Q 041473 290 FTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPT-EVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVS 368 (488)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 368 (488)
++++++++.+. .+|..+. +++++|++++|.+.+..+. .+..++.+ ++|++++|.+.+..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCC-CEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56666666665 4454443 3677777777777644333 25566666 778888888877777888888999999999
Q ss_pred CCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccc-hhhhccccCceeeccCcccccc
Q 041473 369 ENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIP-KYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 369 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
+|.+++..+..|..+++|++|++++|+++...+..|..+++|++|++++|++....+ .++.. .++...+.++...+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~ 164 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCG 164 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCC
Confidence 999987777778899999999999999998888899999999999999999986543 22222 233344555655555
Q ss_pred cCCccccCCcceeeecCCCCcccc
Q 041473 448 VPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 448 ~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
.| ..+....-.++..+...|.+
T Consensus 165 ~P--~~l~~~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 165 AP--SKVRDVQIKDLPHSEFKCSS 186 (192)
T ss_dssp SS--TTTTTSBGGGSCTTTCCCCC
T ss_pred CC--hHHcCCChhhCcHhhcCcCC
Confidence 45 23444555566677777764
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=1.4e-15 Score=126.41 Aligned_cols=133 Identities=22% Similarity=0.211 Sum_probs=90.6
Q ss_pred CCCcEEEccCCcCc-cccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEE
Q 041473 311 KNLILLDLSNNNLT-GTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQL 389 (488)
Q Consensus 311 ~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 389 (488)
++|+.|++++|.+. +.+|..+..++.+ ++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNL-EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGC-CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCC-CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45666666666554 3445444455554 5666666665533 456667778888888888775566666667888888
Q ss_pred ecCCccccccCc-ccccCCCCCCEEeccCcccCCccc---hhhhccccCceeeccCccccc
Q 041473 390 VMNGNFFQGNIP-SSFSSLRGIQNLDLSRNNLSGRIP---KYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 390 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~~~~ 446 (488)
++++|.++.... ..+..+++|+.|++++|+++...+ ..+..+++|++|++++|....
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 888887774322 667778888888888888875554 467778888888888887764
No 126
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=4.9e-14 Score=134.07 Aligned_cols=332 Identities=12% Similarity=0.056 Sum_probs=166.6
Q ss_pred CcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhc
Q 041473 31 EIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGF 110 (488)
Q Consensus 31 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 110 (488)
+...+|.+|.+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++......|.++.+|+.+.+..+ +. .+....+.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~ 137 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFK 137 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeee
Confidence 4456677777777777763 355555667777777777777654 44345556667777777666543 22 33333333
Q ss_pred cCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCC
Q 041473 111 TLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNAS 190 (488)
Q Consensus 111 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 190 (488)
.+.. ....+... ........|.++.+|+.+.+..+........+..+.+|+.+.+..+ +.... ...+..+.
T Consensus 138 ~~~~-~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~------~~~F~~~~ 208 (394)
T 4fs7_A 138 GCDF-KEITIPEG-VTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIR------DYCFAECI 208 (394)
T ss_dssp TCCC-SEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEEC------TTTTTTCT
T ss_pred cccc-cccccCcc-ccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeC------chhhcccc
Confidence 3332 22222221 1223345667777777777765433322333566666666655432 11000 01111222
Q ss_pred CccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEc
Q 041473 191 RLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRL 270 (488)
Q Consensus 191 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 270 (488)
.|+.+.+. ..... ..........|+.+.+... ........+..+..++.+.+
T Consensus 209 ~L~~i~~~-------------------------~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~ 260 (394)
T 4fs7_A 209 LLENMEFP-------------------------NSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISI 260 (394)
T ss_dssp TCCBCCCC-------------------------TTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEE
T ss_pred ccceeecC-------------------------CCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEc
Confidence 22222221 11100 0111112233444444322 11122233444444555544
Q ss_pred ccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccc
Q 041473 271 KGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNG 350 (488)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~ 350 (488)
..+... .....|..++.++.+......+ ...+|..+.+|+.+.+. .+ +..
T Consensus 261 ~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~-------------------------~~-i~~ 310 (394)
T 4fs7_A 261 QNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLL-------------------------DS-VKF 310 (394)
T ss_dssp CCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEEC-------------------------TT-CCE
T ss_pred CCCcce-eeccccccccccceeccCceee---ccccccccccccccccc-------------------------cc-cce
Confidence 433211 2233344444444444433221 11233344444444432 22 222
Q ss_pred cCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhc
Q 041473 351 PLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFEN 430 (488)
Q Consensus 351 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 430 (488)
+...+|..+++|+.+++..+ ++.....+|.+|++|+.+++..+ ++.+...+|.+|++|+.+++..+ +. .+..+|.+
T Consensus 311 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~ 386 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFED 386 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCT
T ss_pred echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecC
Confidence 34456777777888877644 54455667888888888888766 66677788888888888888754 22 23456777
Q ss_pred cccCcee
Q 041473 431 FFFLQNL 437 (488)
Q Consensus 431 l~~L~~L 437 (488)
+++|+.+
T Consensus 387 c~~L~~I 393 (394)
T 4fs7_A 387 TTKFKWI 393 (394)
T ss_dssp TCEEEEE
T ss_pred CCCCcEE
Confidence 7777764
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=5.4e-18 Score=167.78 Aligned_cols=122 Identities=25% Similarity=0.337 Sum_probs=100.6
Q ss_pred CCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEec
Q 041473 312 NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391 (488)
Q Consensus 312 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 391 (488)
.|+.|++++|.++ .+|. +..++.+ ++|++++|.+. .+|..+..+++|++|++++|.++ .+| .+..+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-LEQLLLV-THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-GGGGTTC-CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC-CCcC-ccccccC-cEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEEC
Confidence 5788888888887 4665 7777776 78888888888 67788888999999999999998 467 7888999999999
Q ss_pred CCccccccC-cccccCCCCCCEEeccCcccCCccc---hhhhccccCceeec
Q 041473 392 NGNFFQGNI-PSSFSSLRGIQNLDLSRNNLSGRIP---KYFENFFFLQNLNL 439 (488)
Q Consensus 392 ~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l 439 (488)
++|.++... |..+..+++|+.|++++|++++..+ ..+..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999998765 8889999999999999999986644 33455888988864
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2.9e-15 Score=124.36 Aligned_cols=135 Identities=19% Similarity=0.229 Sum_probs=106.4
Q ss_pred CccCcEEeccCCCCC-CCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEE
Q 041473 15 LSKLRTLAVHFNNLS-GEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLL 93 (488)
Q Consensus 15 ~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 93 (488)
.++|++|++++|.++ +.++..+..+++|+.|++++|.+... ..+..+++|++|++++|.++..+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 477899999998887 56777788889999999999988755 668888999999999998886677777788899999
Q ss_pred ecccCCcCCCCCc-chhccCCCCcEEEcCCCcccccCC---ccccCCCCCceeecccCCCccC
Q 041473 94 DFPVNQLQGSLPS-DIGFTLPNLEVLNFGNNQFTGPIP---ASISNASNLMRLTIQKNGFSGK 152 (488)
Q Consensus 94 ~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~ 152 (488)
++++|.++ .++. ..+..+++|+.|++++|++....+ ..+..+++|+.|++++|.....
T Consensus 101 ~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999887 5552 333368888999998888874333 3677888888888888776543
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=5.7e-15 Score=123.73 Aligned_cols=135 Identities=24% Similarity=0.297 Sum_probs=103.3
Q ss_pred CcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecC
Q 041473 313 LILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMN 392 (488)
Q Consensus 313 L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 392 (488)
.+.++++++.+. .+|..+. ..+ ++|++++|.+.+..+..+..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSA-TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC--CCC-cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 467888888776 5564432 333 788888888886666677788888888888888885555567788888888888
Q ss_pred CccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCc
Q 041473 393 GNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK 451 (488)
Q Consensus 393 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 451 (488)
+|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+.+|..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 143 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccH
Confidence 88888766677788888888888888888666666777888888888888888776643
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=5.6e-15 Score=123.77 Aligned_cols=130 Identities=23% Similarity=0.283 Sum_probs=65.1
Q ss_pred cEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccC
Q 041473 290 FTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSE 369 (488)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 369 (488)
+.++++++.+. ..|..+. ++|+.|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..|..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQL-TKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-SEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccc-cEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 44555555544 2232221 455555555555553333333444444 5555555555544444455555555555555
Q ss_pred CcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCc
Q 041473 370 NKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR 423 (488)
Q Consensus 370 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 423 (488)
|.+++..+..+..+++|+.|++++|.++...+..+..+++|++|++++|++...
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 555533334445555555555555555544444455555555555555555533
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=2.6e-15 Score=121.96 Aligned_cols=85 Identities=22% Similarity=0.308 Sum_probs=48.0
Q ss_pred ccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCcccccc-CcccccCCCCCCEEeccCcccCCccc---hhhhcc
Q 041473 356 FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGN-IPSSFSSLRGIQNLDLSRNNLSGRIP---KYFENF 431 (488)
Q Consensus 356 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~l 431 (488)
+..+++|++|++++|.+++.+|..+..+++|++|++++|.++.. .+..+..+++|++|++++|++++..+ ..+..+
T Consensus 60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 139 (149)
T 2je0_A 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL 139 (149)
T ss_dssp CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC
T ss_pred hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC
Confidence 34455566666666666544555555566666666666665532 22455556666666666666654443 355566
Q ss_pred ccCceeecc
Q 041473 432 FFLQNLNLS 440 (488)
Q Consensus 432 ~~L~~L~l~ 440 (488)
++|+.|+++
T Consensus 140 ~~L~~L~l~ 148 (149)
T 2je0_A 140 PQLTYLDGY 148 (149)
T ss_dssp TTCCEETTB
T ss_pred CCcccccCC
Confidence 666666554
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=1.2e-15 Score=155.78 Aligned_cols=119 Identities=32% Similarity=0.445 Sum_probs=55.7
Q ss_pred ccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCC
Q 041473 305 SSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCV 384 (488)
Q Consensus 305 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 384 (488)
..+..+++|+.|++++|.+. .+|..++.++.+ ++|++++|.+. .+|..+..+++|++|+|++|.++ .+|..|..++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIF-NISANIFKYDFL-TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp ----CCCCCCEEECTTSCCS-CCCGGGGGCCSC-SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhccCCCCcEEECCCCCCC-CCChhhcCCCCC-CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 33444444444444444444 344444444443 44444444444 34444444555555555555555 4454555555
Q ss_pred CCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhh
Q 041473 385 RLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYF 428 (488)
Q Consensus 385 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 428 (488)
+|++|++++|.++ .+|..|..+++|+.|+|++|++++.+|..+
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 5555555555554 333345555555555555555554444444
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=4.2e-15 Score=120.71 Aligned_cols=128 Identities=20% Similarity=0.277 Sum_probs=102.9
Q ss_pred CCccCcEEeccCCCCC-CCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcE
Q 041473 14 SLSKLRTLAVHFNNLS-GEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSL 92 (488)
Q Consensus 14 ~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 92 (488)
..+++++|++++|.++ +.++..+..+++|+.|++++|.+... ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999887 57777888899999999999988755 66888899999999999988667887888899999
Q ss_pred EecccCCcCCCCC--cchhccCCCCcEEEcCCCcccccCC---ccccCCCCCceeecc
Q 041473 93 LDFPVNQLQGSLP--SDIGFTLPNLEVLNFGNNQFTGPIP---ASISNASNLMRLTIQ 145 (488)
Q Consensus 93 L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~ 145 (488)
|++++|.++ .++ ..+ ..+++|+.|++++|++....+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~-~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIK-DLSTIEPL-KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCC-SHHHHGGG-GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCC-ChHHHHHH-hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999887 543 333 368889999999888874443 367778888888775
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=6.3e-14 Score=132.61 Aligned_cols=219 Identities=12% Similarity=0.084 Sum_probs=151.2
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCccccEEecC
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLFTLSFE 295 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 295 (488)
+|+++.+..+ ++.....+|.++ +|+.+.+.. .+......+|.++++|+.+++.++.+.......|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 5666766554 444445556553 577777775 45545566777778888888877776655455555 5778888876
Q ss_pred CCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCccc--
Q 041473 296 GNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLS-- 373 (488)
Q Consensus 296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-- 373 (488)
.+ +......+|..|++|+.+.+..+ ++ .++...+....+ +.+.+. +.+......+|..+++|+.+++.++.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~~~L-~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRESGI-TTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTTCCC-SEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-cc-CccccccccCCc-cEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 43 55456667778888888888764 33 333333333444 677774 3344466778888888888888877654
Q ss_pred ---CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCccccc
Q 041473 374 ---GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEG 446 (488)
Q Consensus 374 ---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 446 (488)
...+.+|.+|++|+.+.+.+ .+..+...+|.+|.+|+.++|..+ ++.....+|.++ +|+.+++.+|....
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 34556788888888888884 477677888888888998888654 665677888888 88888888886653
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=2.5e-13 Score=128.53 Aligned_cols=128 Identities=9% Similarity=0.016 Sum_probs=71.4
Q ss_pred cccEEEccccccccccchhccCCCCCCEEEccCCcCC-----CCccccccCCCCccEEEcccccccCCCCccccCCcccc
Q 041473 216 RLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFT-----GRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLTLLF 290 (488)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 290 (488)
+|+.+.+. +.++.....+|.+|++|+.+.+.++... .....+|.++++|+.+.+.++ +.......|.+|++|+
T Consensus 249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCC
T ss_pred CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCcc
Confidence 45555552 2233344455666666776666665443 234456666677777777633 4444455666677777
Q ss_pred EEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCc
Q 041473 291 TLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQ 347 (488)
Q Consensus 291 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~ 347 (488)
.+.+..+ +......+|.++ +|+.+.+.+|.........+..++..+..+.+..+.
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 7777543 444455666666 777777777665533334444443333455555543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=9.1e-15 Score=122.28 Aligned_cols=134 Identities=16% Similarity=0.194 Sum_probs=88.5
Q ss_pred cCCCCCcEEEccCCcCccccchhhhccc-CceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCC
Q 041473 308 GKCKNLILLDLSNNNLTGTIPTEVIGLS-SLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRL 386 (488)
Q Consensus 308 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 386 (488)
..+++|+.|++++|.+. .++. +.... .+ ++|++++|.+.+. ..+..+++|++|++++|.++...+..+..+++|
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L-~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQF-DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCC-SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCC-CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 34455555555555555 3332 22333 33 5666666665533 456677888888888888874433445778888
Q ss_pred CEEecCCccccccCcc--cccCCCCCCEEeccCcccCCccch----hhhccccCceeeccCccccccc
Q 041473 387 EQLVMNGNFFQGNIPS--SFSSLRGIQNLDLSRNNLSGRIPK----YFENFFFLQNLNLSSNHFEGEV 448 (488)
Q Consensus 387 ~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~~~~ 448 (488)
++|++++|.+.. .+. .+..+++|+.|++++|++.. .|. .+..+++|+.|++++|......
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~ 156 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKERQ 156 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHHHH
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHHHH
Confidence 888888888864 343 67788888888888888873 444 4788888888888888776443
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=2.3e-15 Score=153.83 Aligned_cols=154 Identities=23% Similarity=0.278 Sum_probs=95.9
Q ss_pred CCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCcccc
Q 041473 278 EIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFG 357 (488)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~ 357 (488)
..+..+..++.|+.|++++|.+. .++..+..+++|++|++++|.++ .+|..+..++.+ ++|++++|.+. .+|..+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNL-RVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTC-CEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCC-CEEeCcCCcCC-ccChhhc
Confidence 33455666777777777777766 45555556777777777777777 667667666666 67777777777 5577777
Q ss_pred CCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCC-CCCEEeccCcccCCccchhhhccccCce
Q 041473 358 ILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLR-GIQNLDLSRNNLSGRIPKYFENFFFLQN 436 (488)
Q Consensus 358 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 436 (488)
.+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+....+..+..+. .+..+++++|.+++.+|. .|+.
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~ 363 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRF 363 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccce
Confidence 7777888888877776 6677777777888888888877766666654432 222466777777766653 3455
Q ss_pred eeccCc
Q 041473 437 LNLSSN 442 (488)
Q Consensus 437 L~l~~n 442 (488)
|++++|
T Consensus 364 l~l~~n 369 (727)
T 4b8c_D 364 IEINTD 369 (727)
T ss_dssp ------
T ss_pred eEeecc
Confidence 556555
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=7.6e-14 Score=115.67 Aligned_cols=110 Identities=20% Similarity=0.255 Sum_probs=96.2
Q ss_pred eEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
+.++++++.+. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|+++...+..|.++++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 57899999998 4555543 78999999999999777888999999999999999999877888899999999999999
Q ss_pred ccCCccchhhhccccCceeeccCcccccccCCc
Q 041473 419 NLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIK 451 (488)
Q Consensus 419 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 451 (488)
++++..+..|..+++|++|++++|++.+.++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l 121 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 121 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence 999777778999999999999999999887643
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=4.3e-14 Score=118.19 Aligned_cols=134 Identities=18% Similarity=0.118 Sum_probs=94.3
Q ss_pred cccCCccCcEEeccCCCCCCCcCccccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCC
Q 041473 11 KLGSLSKLRTLAVHFNNLSGEIPSSFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSL 90 (488)
Q Consensus 11 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 90 (488)
.+..+++|++|++++|.++. ++......++|++|++++|.+... ..|..+++|++|++++|.++...+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 45677888888888888873 444333334888888888887754 467788888888888888874444445778888
Q ss_pred cEEecccCCcCCCCCc-chhccCCCCcEEEcCCCcccccCCcc----ccCCCCCceeecccCCC
Q 041473 91 SLLDFPVNQLQGSLPS-DIGFTLPNLEVLNFGNNQFTGPIPAS----ISNASNLMRLTIQKNGF 149 (488)
Q Consensus 91 ~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~ 149 (488)
++|++++|.+. .+|. ..+..+++|+.|++++|.+. ..+.. +..+++|+.|+++++..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 88888888876 6665 12336778888888888776 44543 66677777777776654
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.49 E-value=2.9e-12 Score=121.87 Aligned_cols=331 Identities=12% Similarity=0.101 Sum_probs=152.5
Q ss_pred CcCccccCCc-ccccccccccccccccchhhcCCCCccEEEeeccc---cccccchhhhccCCCcEEecccCCcCCCCCc
Q 041473 31 EIPSSFGNLS-SLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANK---LSGEIPFSIYNLSSLSLLDFPVNQLQGSLPS 106 (488)
Q Consensus 31 ~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 106 (488)
+...+|.++. .|+.+.+... ++.+...+|.++.+|+.+.+..+. ++......|.++.+|+.+.+..+ ++ .++.
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehh
Confidence 3345566663 4666666533 454556667777777777766542 44344556666666766666543 33 4455
Q ss_pred chhccCCCCcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhh
Q 041473 107 DIGFTLPNLEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSL 186 (488)
Q Consensus 107 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 186 (488)
..+..+.+|+.+.+..+ +.......|..+..|+.+.+..+-.......+. ...|+.+.+...... .....+
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~-~~~l~~i~ip~~~~~-------i~~~af 201 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFT-GTALTQIHIPAKVTR-------IGTNAF 201 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTT-TCCCSEEEECTTCCE-------ECTTTT
T ss_pred hhhhhhcccccccccce-eeeecccceecccccccccccceeeEecccccc-ccceeEEEECCcccc-------cccchh
Confidence 55556677777777543 222444556666777777665442211111122 234555544322110 000111
Q ss_pred ccCCCccEEecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCcc
Q 041473 187 VNASRLEMMEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQ 266 (488)
Q Consensus 187 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 266 (488)
..+..++........... ....+ ...+.........+.....+.
T Consensus 202 ~~c~~l~~~~~~~~~~~~--------------------------~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 245 (394)
T 4gt6_A 202 SECFALSTITSDSESYPA--------------------------IDNVL----------YEKSANGDYALIRYPSQREDP 245 (394)
T ss_dssp TTCTTCCEEEECCSSSCB--------------------------SSSCE----------EEECTTSCEEEEECCTTCCCS
T ss_pred hhccccceeccccccccc--------------------------cccee----------ecccccccccccccccccccc
Confidence 122222222222111100 00000 000000000000111112233
Q ss_pred EEEcccccccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCC
Q 041473 267 RLRLKGNKFLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKN 346 (488)
Q Consensus 267 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~ 346 (488)
.+.+... +.......|.+++.|+.+.+..+... ....+|..+++|+.+.+... ++ .
T Consensus 246 ~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~-~-------------------- 301 (394)
T 4gt6_A 246 AFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-IT-E-------------------- 301 (394)
T ss_dssp EEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CC-E--------------------
T ss_pred eEEcCCc-ceEcccceeeecccccEEecccccce-ecCcccccccccccccCCCc-cc-c--------------------
Confidence 3333322 22233345666666666666544322 44556666777776665321 11 1
Q ss_pred cccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccch
Q 041473 347 QLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPK 426 (488)
Q Consensus 347 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 426 (488)
....+|..+.+|+.+++..+ ++.....+|.+|++|+++.+..+ ++.+...+|.+|.+|+.+++.++... ..
T Consensus 302 ----I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~ 372 (394)
T 4gt6_A 302 ----LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WN 372 (394)
T ss_dssp ----ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HH
T ss_pred ----cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hh
Confidence 12234555566666666543 33344456666677777776543 55556666777777777777665432 13
Q ss_pred hhhccccCceeeccCc
Q 041473 427 YFENFFFLQNLNLSSN 442 (488)
Q Consensus 427 ~l~~l~~L~~L~l~~n 442 (488)
.+..+..|+.+.+..+
T Consensus 373 ~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 373 AISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCBCCCCC--------
T ss_pred hhhccCCCCEEEeCCC
Confidence 4555666666666544
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.1e-13 Score=114.77 Aligned_cols=108 Identities=24% Similarity=0.301 Sum_probs=87.0
Q ss_pred CCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEec
Q 041473 312 NLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVM 391 (488)
Q Consensus 312 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 391 (488)
..+.++++++.++ .+|..+. ..+ ++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l-~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTT-QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCC-cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 3578888888887 6776553 334 78899999888777888888889999999999888665666788889999999
Q ss_pred CCccccccCcccccCCCCCCEEeccCcccCCc
Q 041473 392 NGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR 423 (488)
Q Consensus 392 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 423 (488)
++|+++...+..|..+++|+.|++++|++...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99988877777788889999999999988744
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=1.6e-13 Score=114.15 Aligned_cols=112 Identities=21% Similarity=0.268 Sum_probs=96.0
Q ss_pred eEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 339 IYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 339 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
+.++++++.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|+++...+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57899999987 5565553 78999999999999777888999999999999999999777777899999999999999
Q ss_pred ccCCccchhhhccccCceeeccCcccccccCCccc
Q 041473 419 NLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGV 453 (488)
Q Consensus 419 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 453 (488)
+++...+..|..+++|+.|++++|++.+.++....
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~ 126 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMY 126 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHH
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccHHH
Confidence 99977777799999999999999999987764433
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.48 E-value=7.4e-12 Score=119.02 Aligned_cols=334 Identities=10% Similarity=0.069 Sum_probs=197.9
Q ss_pred cccccchhhcCCC-CccEEEeeccccccccchhhhccCCCcEEecccCC---cCCCCCcchhccCCCCcEEEcCCCcccc
Q 041473 52 FVGQIPETLSELK-RMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQ---LQGSLPSDIGFTLPNLEVLNFGNNQFTG 127 (488)
Q Consensus 52 ~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 127 (488)
.+.+...+|.+++ .|+.+.+..+ ++.....+|.++.+|+.+.+..+. ++ .+....+..+.+|+.+.+..+ +..
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cce
Confidence 4556677898885 5999999875 565778899999999999998753 55 666777778899998888654 443
Q ss_pred cCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccEEecCCCcccccCc
Q 041473 128 PIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEMMEISINNFGGMLP 207 (488)
Q Consensus 128 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~ 207 (488)
.....|..+.+|+.+.+..+........+..+..|+.+.+..+. . .+ ..
T Consensus 128 I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~-~--------------------~I----------~~ 176 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSV-T--------------------AI----------EE 176 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC-C--------------------EE----------CT
T ss_pred ehhhhhhhhcccccccccceeeeecccceeccccccccccccee-e--------------------Ee----------cc
Confidence 55677889999999999754333222335556666666554221 0 00 00
Q ss_pred hhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEcccccccCCCCccccCCc
Q 041473 208 ESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNKFLGEIPSSVGNLT 287 (488)
Q Consensus 208 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 287 (488)
..+. . ..|+++.+.... .......+..+..++................+........-. ..+....
T Consensus 177 ~aF~-~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 242 (394)
T 4gt6_A 177 RAFT-G-TALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL-----------IRYPSQR 242 (394)
T ss_dssp TTTT-T-CCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE-----------EECCTTC
T ss_pred cccc-c-cceeEEEECCcc-cccccchhhhccccceecccccccccccceeecccccccccc-----------ccccccc
Confidence 0011 1 245555554332 122334455566666655544332211111111100000000 0011122
Q ss_pred cccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEc
Q 041473 288 LLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDV 367 (488)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 367 (488)
.+..+.+.. .+......+|..|..|+.+.+... ... ....+|..++.|+.+.+
T Consensus 243 ~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-------------------------~~~-I~~~aF~~c~~L~~i~l 295 (394)
T 4gt6_A 243 EDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-------------------------VVS-IGTGAFMNCPALQDIEF 295 (394)
T ss_dssp CCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT-------------------------CCE-ECTTTTTTCTTCCEEEC
T ss_pred ccceEEcCC-cceEcccceeeecccccEEecccc-------------------------cce-ecCcccccccccccccC
Confidence 333333322 122233445556666665554322 111 34456778889999999
Q ss_pred cCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccc
Q 041473 368 SENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGE 447 (488)
Q Consensus 368 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 447 (488)
.. .++.....+|.+|.+|+.+++..+ ++.+...+|.+|.+|+.+.|..+ ++.....+|.+|.+|+.+++.++....
T Consensus 296 ~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~- 371 (394)
T 4gt6_A 296 SS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW- 371 (394)
T ss_dssp CT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-
T ss_pred CC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-
Confidence 64 455455678999999999999865 66678899999999999999765 666788999999999999999886432
Q ss_pred cCCccccCCcceeeecCC
Q 041473 448 VPIKGVFSNSSAISLDGN 465 (488)
Q Consensus 448 ~~~~~~~~~L~~l~l~~n 465 (488)
........|+.+.+..+
T Consensus 372 -~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 372 -NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp -HTCBCCCCC--------
T ss_pred -hhhhccCCCCEEEeCCC
Confidence 22333455666655443
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=8.5e-16 Score=131.28 Aligned_cols=132 Identities=22% Similarity=0.281 Sum_probs=74.9
Q ss_pred cccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCC
Q 041473 306 SLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVR 385 (488)
Q Consensus 306 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 385 (488)
.+..+++|++|++++|.+. .+| .+..++.+ ++|++++|.+. .+|..+..+++|++|++++|.++ .+| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L-~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KIS-SLSGMENL-RILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCC-CHHHHTTC-CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCc-ccc-ccccCCCC-CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-cCC-ccccCCC
Confidence 4555555555555555555 244 44444444 55555555555 34444444566666666666666 333 4556666
Q ss_pred CCEEecCCccccccCc-ccccCCCCCCEEeccCcccCCccch----------hhhccccCceeeccCcccc
Q 041473 386 LEQLVMNGNFFQGNIP-SSFSSLRGIQNLDLSRNNLSGRIPK----------YFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 386 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~----------~l~~l~~L~~L~l~~n~~~ 445 (488)
|+.|++++|.+..... ..+..+++|++|++++|++.+..|. .+..+++|+.|| +++++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6666666666664222 3556666677777777766544332 256666666665 55554
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2.4e-13 Score=112.99 Aligned_cols=107 Identities=24% Similarity=0.305 Sum_probs=86.2
Q ss_pred CcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecC
Q 041473 313 LILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMN 392 (488)
Q Consensus 313 L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 392 (488)
-+.++++++.+. .+|..+. ..+ ++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|+.|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDK-QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCC-cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 367888888886 7776553 334 789999999887778888888999999999999885545567888999999999
Q ss_pred CccccccCcccccCCCCCCEEeccCcccCCc
Q 041473 393 GNFFQGNIPSSFSSLRGIQNLDLSRNNLSGR 423 (488)
Q Consensus 393 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 423 (488)
+|.+....+..|..+++|+.|++++|++...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9998876667788889999999999988743
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=6.7e-16 Score=131.95 Aligned_cols=133 Identities=19% Similarity=0.230 Sum_probs=107.0
Q ss_pred ccchhhhcccCceeEEEccCCcccccCCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCccccc
Q 041473 326 TIPTEVIGLSSLSIYLDLSKNQLNGPLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFS 405 (488)
Q Consensus 326 ~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 405 (488)
.+|..+..++.+ ++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++. .+ .+.
T Consensus 39 ~l~~~~~~l~~L-~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~ 112 (198)
T 1ds9_A 39 KMDATLSTLKAC-KHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIE 112 (198)
T ss_dssp CCHHHHHHTTTC-SEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred hhhHHHhcCCCC-CEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccc
Confidence 344477777777 899999999885 55 7888899999999999998 778777778999999999999885 33 577
Q ss_pred CCCCCCEEeccCcccCCccc-hhhhccccCceeeccCcccccccCC-----------ccccCCcceeeecCCC
Q 041473 406 SLRGIQNLDLSRNNLSGRIP-KYFENFFFLQNLNLSSNHFEGEVPI-----------KGVFSNSSAISLDGND 466 (488)
Q Consensus 406 ~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~-----------~~~~~~L~~l~l~~n~ 466 (488)
.+++|+.|++++|+++...+ ..+..+++|++|++++|++.+.+|. ...+++|+.|+ +|+
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 88999999999999885433 5788899999999999999877665 45667777765 454
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=2.2e-13 Score=127.69 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=44.9
Q ss_pred CCccEEEccCCcccCC----CccccccCCCCCEEecCCccccccC----cccccCCCCCCEEeccCcccCCc----cchh
Q 041473 360 KNLGVLDVSENKLSGE----IPNSLGSCVRLEQLVMNGNFFQGNI----PSSFSSLRGIQNLDLSRNNLSGR----IPKY 427 (488)
Q Consensus 360 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~----~~~~ 427 (488)
+.|++|++++|.++.. ++..+..+++|++|++++|.+++.. ...+..+++|+.|+|++|.++.. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4566666666655421 2223344556666666666555322 33444455666666666665533 2233
Q ss_pred hhccccCceeeccCcccc
Q 041473 428 FENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 428 l~~l~~L~~L~l~~n~~~ 445 (488)
+..+++|++|++++|+++
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 344456666666666654
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=6.9e-12 Score=117.21 Aligned_cols=141 Identities=19% Similarity=0.214 Sum_probs=84.0
Q ss_pred EEEccCC-cccccCCccccCCCCccEEEccC-CcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccC
Q 041473 340 YLDLSKN-QLNGPLPSNFGILKNLGVLDVSE-NKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSR 417 (488)
Q Consensus 340 ~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 417 (488)
.++++++ .+. .+|. +..+++|++|+|++ |.+....+..|.++++|++|+|++|+++...+..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 555 3455 66666777777775 677655556677777777777777777766666777777777777777
Q ss_pred cccCCccchhhhccccCceeeccCcccccccCCcccc--CCcceeeecCCCCcccc---ccccccCcchhh
Q 041473 418 NNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKGVF--SNSSAISLDGNDNLCGG---ISELHLSTCSIK 483 (488)
Q Consensus 418 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~--~~L~~l~l~~n~~~c~~---~~~l~~~~c~~~ 483 (488)
|+++...+..|..++ |+.|++.+|++.+.+...+.. .......+..+...|.. +..+++..|..+
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~~l~~~~c~~P 159 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVP 159 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCCTTCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHhcCCcccCCCC
Confidence 777755555555544 777777777777655532221 11122333444455543 445555556433
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.28 E-value=6.8e-10 Score=104.95 Aligned_cols=81 Identities=11% Similarity=0.125 Sum_probs=55.3
Q ss_pred CCccccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccCCccchhhhcc
Q 041473 352 LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENF 431 (488)
Q Consensus 352 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 431 (488)
...+|..+++|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++.....+|.++
T Consensus 278 ~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 278 PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 3446667777777777777776555667777788888887654 55566777888888888877654 554556677665
Q ss_pred ccC
Q 041473 432 FFL 434 (488)
Q Consensus 432 ~~L 434 (488)
+.+
T Consensus 356 ~~~ 358 (379)
T 4h09_A 356 SIT 358 (379)
T ss_dssp SCC
T ss_pred CCC
Confidence 433
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.1e-11 Score=115.81 Aligned_cols=107 Identities=21% Similarity=0.199 Sum_probs=94.1
Q ss_pred cEEEccCC-cccCCCccccccCCCCCEEecCC-ccccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeecc
Q 041473 363 GVLDVSEN-KLSGEIPNSLGSCVRLEQLVMNG-NFFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLS 440 (488)
Q Consensus 363 ~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 440 (488)
..++++++ .++ .+|. +..+++|++|+|++ |.+....+..|.++++|+.|+|++|++++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788988 888 7888 99999999999996 99998888999999999999999999998889999999999999999
Q ss_pred CcccccccCCccccCCcceeeecCCCCcccc
Q 041473 441 SNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 441 ~n~~~~~~~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
+|.+++..+.......|+.|++.+|++.|++
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 9999965554333334999999999999975
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=7.1e-13 Score=124.17 Aligned_cols=161 Identities=17% Similarity=0.112 Sum_probs=107.0
Q ss_pred CCCcEEEccCCcCccccchhhhcc----cCceeEEEccCCcccccCCcc-ccCCCCccEEEccCCcccCCCcccc-----
Q 041473 311 KNLILLDLSNNNLTGTIPTEVIGL----SSLSIYLDLSKNQLNGPLPSN-FGILKNLGVLDVSENKLSGEIPNSL----- 380 (488)
Q Consensus 311 ~~L~~L~l~~~~~~~~~~~~~~~~----~~l~~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~----- 380 (488)
+.|+.|++++|.++......+... ...+++|++++|.+....... ...+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 445566666665543222222211 122366666666654322222 2234678999999998875444333
Q ss_pred ccCCCCCEEecCCccccccC----cccccCCCCCCEEeccCcccCCcc----chhhhccccCceeeccCccccccc----
Q 041473 381 GSCVRLEQLVMNGNFFQGNI----PSSFSSLRGIQNLDLSRNNLSGRI----PKYFENFFFLQNLNLSSNHFEGEV---- 448 (488)
Q Consensus 381 ~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~~---- 448 (488)
...++|++|++++|.+++.. ...+..+++|++|+|++|.+.... +..+...++|++|++++|.++..-
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 34689999999999997533 344577899999999999988543 566778889999999999997421
Q ss_pred -CCccccCCcceeeecCCCCcccc
Q 041473 449 -PIKGVFSNSSAISLDGNDNLCGG 471 (488)
Q Consensus 449 -~~~~~~~~L~~l~l~~n~~~c~~ 471 (488)
......++|+.|++++|+..-.+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHH
Confidence 12334688999999999876433
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.19 E-value=2.7e-09 Score=100.84 Aligned_cols=319 Identities=10% Similarity=0.021 Sum_probs=161.4
Q ss_pred cccCCcccccccccccccccccchhhcCCCCccEEEeeccccccccchhhhccCCCcEEecccCCcCCCCCcchhccCCC
Q 041473 35 SFGNLSSLEFLSAAVNQFVGQIPETLSELKRMRSIGFGANKLSGEIPFSIYNLSSLSLLDFPVNQLQGSLPSDIGFTLPN 114 (488)
Q Consensus 35 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 114 (488)
++....+|+.+.+. ..++.+...+|.++.+|+.+++..+ ++.....+|.++ +|+.+.+..+ +. .+....+. ..+
T Consensus 41 ~~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~-~~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQ-GTD 114 (379)
T ss_dssp TGGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTT-TCC
T ss_pred ccccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceec-cCC
Confidence 45666778888876 3466677778888888888888754 554566677776 6777766543 44 55555553 347
Q ss_pred CcEEEcCCCcccccCCccccCCCCCceeecccCCCccCCCCcccccccceeeccccccCCCCCCchhhhhhhccCCCccE
Q 041473 115 LEVLNFGNNQFTGPIPASISNASNLMRLTIQKNGFSGKVPSLENLYKLQRVSFSLNHLGNGEKDDLEFVSSLVNASRLEM 194 (488)
Q Consensus 115 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 194 (488)
|+.+.+..+- .......|.+. .++.+.+..+-.......+..+..++.+.+........... ...
T Consensus 115 L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~-------~~~------ 179 (379)
T 4h09_A 115 LDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAEN-------YVL------ 179 (379)
T ss_dssp CSEEECCTTC-CEECTTTTTTC-CCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEET-------TEE------
T ss_pred cccccCCCcc-ccccccccccc-eeeeeeccceeeccccchhcccccccccccccccceeeccc-------cee------
Confidence 8888886542 22333344433 56666655432222223355556666655443221100000 000
Q ss_pred EecCCCcccccCchhhhhhhccccEEEccccccccccchhccCCCCCCEEEccCCcCCCCccccccCCCCccEEEccccc
Q 041473 195 MEISINNFGGMLPESVGNLSTRLKRFTVGNNQLFGNIPSGLGNLVNLELLDLGDNQFTGRILGSIGDLQKLQRLRLKGNK 274 (488)
Q Consensus 195 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 274 (488)
.. .. ......+..+..+..+.+..... ......+....+++.+.+..+
T Consensus 180 --~~-----------------~~-----------~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~- 227 (379)
T 4h09_A 180 --YN-----------------KN-----------KTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG- 227 (379)
T ss_dssp --EE-----------------TT-----------SSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-
T ss_pred --cc-----------------cc-----------cceecccccccccccccccccee-EEeecccccccccceeeeccc-
Confidence 00 00 00000111122222222222111 111222333344444444332
Q ss_pred ccCCCCccccCCccccEEecCCCccCCCCCccccCCCCCcEEEccCCcCccccchhhhcccCceeEEEccCCcccccCCc
Q 041473 275 FLGEIPSSVGNLTLLFTLSFEGNRLEGSIPSSLGKCKNLILLDLSNNNLTGTIPTEVIGLSSLSIYLDLSKNQLNGPLPS 354 (488)
Q Consensus 275 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~ 354 (488)
+.......+..+..|+.+.+..+ +......+|..+.+|+.+.+..+ +...-...+..+..+ +.+.+.++.+..+...
T Consensus 228 ~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L-~~i~l~~~~i~~I~~~ 304 (379)
T 4h09_A 228 VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL-TKVVMDNSAIETLEPR 304 (379)
T ss_dssp CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC-CEEEECCTTCCEECTT
T ss_pred eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc-ccccccccccceehhh
Confidence 11122233444444444444332 22233334444555555554432 221112223333333 4555555555445556
Q ss_pred cccCCCCccEEEccCCcccCCCccccccCCCCCEEecCCccccccCcccccCCCCCC
Q 041473 355 NFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQ 411 (488)
Q Consensus 355 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 411 (488)
+|..+.+|+.+++..+ ++.....+|.+|++|+++.+..+ ++.+...+|.++..++
T Consensus 305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence 7888888888888754 55455678889999999998765 6667778888875443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=2.8e-09 Score=98.85 Aligned_cols=83 Identities=12% Similarity=0.217 Sum_probs=44.0
Q ss_pred CCCccEEEccCCcccCCCccccc---cCCCCCEEecCCccccccCccc----ccCCCCCCEEeccCcccCCccchhhhc-
Q 041473 359 LKNLGVLDVSENKLSGEIPNSLG---SCVRLEQLVMNGNFFQGNIPSS----FSSLRGIQNLDLSRNNLSGRIPKYFEN- 430 (488)
Q Consensus 359 l~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~l~~- 430 (488)
+++|++|++.+|.+....+..+. .+++|++|+++.|.+.+.+... +..+++|+.|++++|.++......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 56677777766665532222221 3566667777666665433222 233466666666666665444433332
Q ss_pred cccCceeeccCcc
Q 041473 431 FFFLQNLNLSSNH 443 (488)
Q Consensus 431 l~~L~~L~l~~n~ 443 (488)
+ ...++++++.
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 1 2445665554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=2.3e-09 Score=99.40 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=57.1
Q ss_pred cCCCCCEEecCCccccccCccccc---CCCCCCEEeccCcccCCcc----chhhhccccCceeeccCcccccccCCcccc
Q 041473 382 SCVRLEQLVMNGNFFQGNIPSSFS---SLRGIQNLDLSRNNLSGRI----PKYFENFFFLQNLNLSSNHFEGEVPIKGVF 454 (488)
Q Consensus 382 ~~~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 454 (488)
.+++|+.|++.+|.+.+.....+. .+++|+.|+|+.|.+.... +..+..+++|+.|++++|.++... ...+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~--~~~l 327 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM--KKEL 327 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH--HHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH--HHHH
Confidence 478999999999988754433332 4789999999999888653 344466799999999999876421 1112
Q ss_pred CC--cceeeecCCC
Q 041473 455 SN--SSAISLDGND 466 (488)
Q Consensus 455 ~~--L~~l~l~~n~ 466 (488)
.. ..+++++++.
T Consensus 328 ~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 328 QKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHCCSEEECCSBC
T ss_pred HHHcCCEEEecCCc
Confidence 21 2456776664
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.68 E-value=8.4e-09 Score=83.81 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=58.8
Q ss_pred CCccEEEccCCcccCCCccccccCCCCCEEecCCcc-ccccCcccccCC----CCCCEEeccCcc-cCCccchhhhcccc
Q 041473 360 KNLGVLDVSENKLSGEIPNSLGSCVRLEQLVMNGNF-FQGNIPSSFSSL----RGIQNLDLSRNN-LSGRIPKYFENFFF 433 (488)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~l~~l~~ 433 (488)
..|+.||+++|.++......+..+++|++|++++|. +++..-..+..+ ++|++|+|++|. ++......+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777777776666666777777777777774 665555555543 467777777774 66665666677777
Q ss_pred CceeeccCccc
Q 041473 434 LQNLNLSSNHF 444 (488)
Q Consensus 434 L~~L~l~~n~~ 444 (488)
|++|++++|+-
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 77777777753
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.49 E-value=6.4e-08 Score=78.63 Aligned_cols=94 Identities=7% Similarity=0.046 Sum_probs=74.0
Q ss_pred ccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcc-cCCccchhhhc----cccCceeeccCcc-cccc-cC
Q 041473 377 PNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNN-LSGRIPKYFEN----FFFLQNLNLSSNH-FEGE-VP 449 (488)
Q Consensus 377 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~----l~~L~~L~l~~n~-~~~~-~~ 449 (488)
|........|++|++++|.+++.+-..+.+|++|++|+|++|. ++......+.. +++|++|+|++|+ ++.. +.
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 4333334689999999999998888888999999999999995 77666666765 3589999999996 6532 44
Q ss_pred CccccCCcceeeecCCCCccc
Q 041473 450 IKGVFSNSSAISLDGNDNLCG 470 (488)
Q Consensus 450 ~~~~~~~L~~l~l~~n~~~c~ 470 (488)
....+++|+.|++++||..-+
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 556689999999999986544
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=3.8e-08 Score=82.32 Aligned_cols=107 Identities=13% Similarity=0.165 Sum_probs=51.5
Q ss_pred eEEEccCC-ccccc----CCccccCCCCccEEEccCCcccCCC----ccccccCCCCCEEecCCccccccC----ccccc
Q 041473 339 IYLDLSKN-QLNGP----LPSNFGILKNLGVLDVSENKLSGEI----PNSLGSCVRLEQLVMNGNFFQGNI----PSSFS 405 (488)
Q Consensus 339 ~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~ 405 (488)
++|++++| .+... +...+...+.|++|+|++|.+.... ...+...++|++|++++|.+.+.+ ..++.
T Consensus 39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~ 118 (185)
T 1io0_A 39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ 118 (185)
T ss_dssp CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH
Confidence 55666655 54421 1223334455566666665554321 223334455566666665555422 23344
Q ss_pred CCCCCCEEec--cCcccCCc----cchhhhccccCceeeccCcccc
Q 041473 406 SLRGIQNLDL--SRNNLSGR----IPKYFENFFFLQNLNLSSNHFE 445 (488)
Q Consensus 406 ~l~~L~~L~l--~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~ 445 (488)
..++|++|++ ++|.+... +.+.+...++|++|++++|.+.
T Consensus 119 ~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 119 SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4455555555 55555533 2233344455555555555543
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=4e-08 Score=82.14 Aligned_cols=89 Identities=11% Similarity=0.170 Sum_probs=39.3
Q ss_pred cCCCCccEEEccCC-cccCC----CccccccCCCCCEEecCCccccccCc----ccccCCCCCCEEeccCcccCCc----
Q 041473 357 GILKNLGVLDVSEN-KLSGE----IPNSLGSCVRLEQLVMNGNFFQGNIP----SSFSSLRGIQNLDLSRNNLSGR---- 423 (488)
Q Consensus 357 ~~l~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~---- 423 (488)
...+.|++|++++| .+... +...+...++|++|++++|.+.+.+. ..+...++|++|+|++|.+...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 33445555555555 44321 12233344455555555555543221 2222334555555555554432
Q ss_pred cchhhhccccCceeec--cCcccc
Q 041473 424 IPKYFENFFFLQNLNL--SSNHFE 445 (488)
Q Consensus 424 ~~~~l~~l~~L~~L~l--~~n~~~ 445 (488)
+.+.+...++|++|++ ++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHhCCCceEEEecCCCCCCC
Confidence 2233344445555555 445444
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=1.7e-07 Score=82.33 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=32.2
Q ss_pred cCCCCCEEecCCccccc--cCcccccCCCCCCEEeccCcccCCccchhhhccc--cCceeeccCccccccc
Q 041473 382 SCVRLEQLVMNGNFFQG--NIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFF--FLQNLNLSSNHFEGEV 448 (488)
Q Consensus 382 ~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~~~~~~ 448 (488)
++++|+.|++++|.++. ..+..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 34555555555555553 2223444555555555555555533 1122222 5556666666655433
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=1.8e-06 Score=75.81 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=60.5
Q ss_pred cCCCCccEEEccCCcccC--CCccccccCCCCCEEecCCccccccCcccccCCC--CCCEEeccCcccCCccc-------
Q 041473 357 GILKNLGVLDVSENKLSG--EIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLR--GIQNLDLSRNNLSGRIP------- 425 (488)
Q Consensus 357 ~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~------- 425 (488)
..+++|++|+|++|.+++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456789999999998885 3345667889999999999998854 2333333 89999999999886544
Q ss_pred hhhhccccCceee
Q 041473 426 KYFENFFFLQNLN 438 (488)
Q Consensus 426 ~~l~~l~~L~~L~ 438 (488)
..+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3467888888876
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.48 E-value=2.8e-05 Score=64.39 Aligned_cols=105 Identities=12% Similarity=0.131 Sum_probs=57.6
Q ss_pred eEEEccCC-ccccc----CCccccCCCCccEEEccCCcccCC----CccccccCCCCCEEecCCccccccCc----cccc
Q 041473 339 IYLDLSKN-QLNGP----LPSNFGILKNLGVLDVSENKLSGE----IPNSLGSCVRLEQLVMNGNFFQGNIP----SSFS 405 (488)
Q Consensus 339 ~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~ 405 (488)
++|+++++ .+... +.+.+..-+.|+.|+|++|.+.+. +.+++...+.|++|+|++|.|.+.+. +++.
T Consensus 44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~ 123 (197)
T 1pgv_A 44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL 123 (197)
T ss_dssp CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT
T ss_pred cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHh
Confidence 66777664 54421 223444456677777777766532 23344456677777777777665333 2333
Q ss_pred CCCCCCEEeccCcc---cCC----ccchhhhccccCceeeccCcc
Q 041473 406 SLRGIQNLDLSRNN---LSG----RIPKYFENFFFLQNLNLSSNH 443 (488)
Q Consensus 406 ~l~~L~~L~l~~n~---~~~----~~~~~l~~l~~L~~L~l~~n~ 443 (488)
.-+.|++|+|++|. +.. .+.+.+..-+.|+.|+++.|.
T Consensus 124 ~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 124 VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 44567777776542 221 133445555666666666554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.34 E-value=0.00012 Score=60.63 Aligned_cols=83 Identities=7% Similarity=0.132 Sum_probs=36.7
Q ss_pred CCccEEEccCC-cccC----CCccccccCCCCCEEecCCccccccCccc----ccCCCCCCEEeccCcccCCcc----ch
Q 041473 360 KNLGVLDVSEN-KLSG----EIPNSLGSCVRLEQLVMNGNFFQGNIPSS----FSSLRGIQNLDLSRNNLSGRI----PK 426 (488)
Q Consensus 360 ~~L~~L~l~~n-~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~~~~~----~~ 426 (488)
+.|++|+|+++ .+.. .+.+++...+.|++|+|++|++.+.+..+ +..-+.|+.|+|++|.+.... .+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 44555555543 4432 12233444455555555555554432222 222345555555555554332 22
Q ss_pred hhhccccCceeeccCc
Q 041473 427 YFENFFFLQNLNLSSN 442 (488)
Q Consensus 427 ~l~~l~~L~~L~l~~n 442 (488)
++..-+.|++|++++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 3333344555555443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.26 E-value=0.00037 Score=53.81 Aligned_cols=56 Identities=21% Similarity=0.398 Sum_probs=30.3
Q ss_pred EEEccCCccc-CCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCcccC
Q 041473 364 VLDVSENKLS-GEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRNNLS 421 (488)
Q Consensus 364 ~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 421 (488)
.++.+++.++ ..+|..+ .++|++|+|++|.++.+.+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5555555554 2444333 235666666666665555555555555555555555554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.98 E-value=0.0015 Score=50.45 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=42.8
Q ss_pred EEecCCcccc-ccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCcccccccCCcc
Q 041473 388 QLVMNGNFFQ-GNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSNHFEGEVPIKG 452 (488)
Q Consensus 388 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 452 (488)
.++.++++++ ..+|..+. ++|+.|+|++|+++...+..|..+++|+.|+|.+|++.+.+...+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~ 75 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVP 75 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHH
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHH
Confidence 6666777665 13333222 467888888888886666777778888888888888877666433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=89.22 E-value=0.76 Score=33.02 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=28.5
Q ss_pred cccCCCccccccCCCCCEEecCCccccccCcccccCCCCCCEEeccCc
Q 041473 371 KLSGEIPNSLGSCVRLEQLVMNGNFFQGNIPSSFSSLRGIQNLDLSRN 418 (488)
Q Consensus 371 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (488)
.++.....+|.+|++|+++.|-.+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444444556666667776666654 33355666666666666666553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=88.94 E-value=0.48 Score=34.10 Aligned_cols=47 Identities=19% Similarity=0.156 Sum_probs=26.3
Q ss_pred cccccCcccccCCCCCCEEeccCcccCCccchhhhccccCceeeccCc
Q 041473 395 FFQGNIPSSFSSLRGIQNLDLSRNNLSGRIPKYFENFFFLQNLNLSSN 442 (488)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 442 (488)
.++.+...+|.+|.+|+.+.|-.+ ++.....+|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444455556666666666666553 33355556666666666665543
Done!