BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041475
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 112 bits (280), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 9/96 (9%)
Query: 55 GIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVSRIE 114
G GR W+AK+NK FE ALA+YDKDTPDRW N+ARAV G+T EEVK+HYE+L ED+ IE
Sbjct: 6 GSGRP-WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIE 64
Query: 115 AGEIPLPDYKKIGGTNKAHSYINMDNEEQRLKTLRL 150
+G++P P+Y+ GG NM +E+R + L++
Sbjct: 65 SGKVPFPNYRTTGG--------NMKTDEKRFRNLKI 92
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 55 GIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEM 105
G GR W +N FE AL+ +KDTPDRW +A+ V G+T EEVK+HYE+
Sbjct: 18 GSGRP-WKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2,
Northeast Structural Genomics Consortium Target Hr8254a
Length = 73
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVSRIEAG 116
G + WT ++ KL E AL Y +TP+RW +A AV G+T ++ + Y+ L E V +A
Sbjct: 2 GFTPWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMVKAKKAA 61
Query: 117 E 117
+
Sbjct: 62 Q 62
>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 61 WTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVS 111
WT Q KL E AL Y + + D W +AR V K+ E+ Y++L S
Sbjct: 21 WTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS 71
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 61 WTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRH 102
WT ++ +LFE LA + + RW +++ +G +TV +VK +
Sbjct: 12 WTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSY 49
>pdb|1WGX|A Chain A, Solution Structure Of Rsgi Ruh-022, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHY 103
G W K+ + A A K P W +A AVG ++ EE +R Y
Sbjct: 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKY 53
>pdb|1OFC|X Chain X, Nucleosome Recognition Module Of Iswi Atpase
Length = 304
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEV 99
G + WT + F A Y +D D N+A+ V GKT EEV
Sbjct: 109 GFTAWTKRDFNQFIKANEKYGRDDID---NIAKDVEGKTPEEV 148
>pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|B Chain B, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|C Chain C, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|D Chain D, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
Length = 997
Score = 26.2 bits (56), Expect = 7.6, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 87 LARAVGGKTVEEVKRHYEMLAEDVSRIEAGEIPLPD 122
L R + E+ R+Y+ + E V+R+EA LPD
Sbjct: 4 LLRRLFDNNEREIARYYKQVVEPVNRLEAEVEKLPD 39
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHY 103
+ +S+WT +++++ A + +RW +A+ + G+T VK H+
Sbjct: 57 VKKSSWTEEEDRIIFEAHKVLG----NRWAEIAKLLPGRTDNAVKNHW 100
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 26.2 bits (56), Expect = 8.7, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 95 TVEEVKRHYEMLAEDVSRIEAGEIPLPDYKKIGGTNKAHSYINMDNEEQRLK 146
T+E++K + A DVS++ + + Y +GGT K+ ++ + LK
Sbjct: 409 TLEDLKSISPLFASDVSQVFSVVNSVEQYTAVGGTAKSSVTAQIEQLRELLK 460
>pdb|2CQQ|A Chain A, Solution Structure Of Rsgi Ruh-037, A Myb Dna-Binding
Domain In Human Cdna
Length = 72
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVS 111
G WT + ++ + TP RW +A + G++V +V + L + V+
Sbjct: 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVT 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,585,101
Number of Sequences: 62578
Number of extensions: 181175
Number of successful extensions: 411
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 24
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)