Query 041475
Match_columns 153
No_of_seqs 134 out of 550
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 12:29:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cjj_A Radialis; plant develop 99.9 6.9E-28 2.4E-32 175.4 8.8 88 56-151 6-93 (93)
2 2cqq_A RSGI RUH-037, DNAJ homo 99.9 7.9E-24 2.7E-28 147.5 8.3 66 57-124 7-72 (72)
3 2cqr_A RSGI RUH-043, DNAJ homo 99.8 3.4E-19 1.2E-23 124.5 6.1 56 56-111 16-71 (73)
4 1wgx_A KIAA1903 protein; MYB D 99.8 2.4E-19 8.1E-24 126.0 5.3 55 57-111 7-61 (73)
5 4eef_G F-HB80.4, designed hema 99.7 1.9E-19 6.3E-24 127.2 -0.5 49 57-105 19-67 (74)
6 2yum_A ZZZ3 protein, zinc fing 99.6 1.4E-15 4.9E-20 104.2 8.6 65 55-123 5-72 (75)
7 2yus_A SWI/SNF-related matrix- 99.5 3.8E-15 1.3E-19 104.9 4.5 61 55-119 15-76 (79)
8 2din_A Cell division cycle 5-l 99.5 9.5E-14 3.3E-18 93.2 7.1 59 54-117 5-63 (66)
9 1x41_A Transcriptional adaptor 99.4 2.3E-13 7.8E-18 90.2 7.0 48 56-106 6-53 (60)
10 2d9a_A B-MYB, MYB-related prot 99.4 2E-13 7E-18 89.9 4.9 52 56-110 6-58 (60)
11 1guu_A C-MYB, MYB proto-oncoge 99.4 4.6E-13 1.6E-17 85.8 6.3 47 58-107 3-49 (52)
12 2elk_A SPCC24B10.08C protein; 99.4 5E-13 1.7E-17 88.3 6.6 45 59-106 10-55 (58)
13 2k9n_A MYB24; R2R3 domain, DNA 99.4 4.2E-13 1.4E-17 97.2 5.0 45 59-106 2-46 (107)
14 2cu7_A KIAA1915 protein; nucle 99.4 1.8E-12 6.1E-17 88.5 7.8 52 54-109 5-56 (72)
15 1gvd_A MYB proto-oncogene prot 99.4 6.7E-13 2.3E-17 85.1 4.8 46 58-106 3-48 (52)
16 2dim_A Cell division cycle 5-l 99.4 7.3E-13 2.5E-17 89.7 5.2 52 56-110 7-59 (70)
17 1gv2_A C-MYB, MYB proto-oncoge 99.3 1.8E-12 6.1E-17 92.9 6.4 46 58-106 4-49 (105)
18 1h8a_C AMV V-MYB, MYB transfor 99.3 2.7E-12 9.1E-17 95.2 7.2 68 56-148 25-92 (128)
19 1w0t_A Telomeric repeat bindin 99.3 3.6E-12 1.2E-16 82.2 6.5 46 59-107 3-50 (53)
20 3sjm_A Telomeric repeat-bindin 99.3 4.3E-12 1.5E-16 85.8 7.0 48 57-107 10-59 (64)
21 2eqr_A N-COR1, N-COR, nuclear 99.3 4.7E-12 1.6E-16 84.5 7.0 51 51-105 5-55 (61)
22 1ity_A TRF1; helix-turn-helix, 99.3 4.1E-12 1.4E-16 85.9 6.4 54 55-111 7-63 (69)
23 3osg_A MYB21; transcription-DN 99.3 8.7E-12 3E-16 92.7 7.5 48 55-106 8-55 (126)
24 3zqc_A MYB3; transcription-DNA 99.2 1.2E-11 4.2E-16 92.3 5.0 45 59-106 3-47 (131)
25 1h89_C C-MYB, MYB proto-oncoge 99.2 4.2E-11 1.4E-15 91.5 7.2 69 56-149 56-124 (159)
26 2k9n_A MYB24; R2R3 domain, DNA 99.2 6E-11 2.1E-15 85.8 7.3 52 56-111 51-102 (107)
27 2llk_A Cyclin-D-binding MYB-li 99.1 3.2E-11 1.1E-15 84.0 4.5 52 54-110 19-70 (73)
28 1gv2_A C-MYB, MYB proto-oncoge 99.1 6.6E-11 2.2E-15 84.7 6.0 48 56-107 54-101 (105)
29 3osg_A MYB21; transcription-DN 99.1 1.2E-10 4.1E-15 86.5 6.5 51 57-111 61-111 (126)
30 2ltp_A Nuclear receptor corepr 98.6 2.2E-11 7.4E-16 86.8 0.0 51 53-107 11-61 (89)
31 1h8a_C AMV V-MYB, MYB transfor 99.0 2.3E-10 8E-15 84.7 4.7 47 56-106 77-123 (128)
32 2yqk_A Arginine-glutamic acid 99.0 1.9E-09 6.6E-14 72.4 7.4 48 53-104 4-52 (63)
33 2ckx_A NGTRF1, telomere bindin 98.9 1.5E-09 5.1E-14 77.2 6.4 47 59-108 1-51 (83)
34 3zqc_A MYB3; transcription-DNA 98.9 1E-09 3.5E-14 81.8 5.2 48 57-108 53-100 (131)
35 2iw5_B Protein corest, REST co 98.9 3.7E-09 1.3E-13 88.0 8.7 92 52-148 127-227 (235)
36 1h89_C C-MYB, MYB proto-oncoge 98.9 1.5E-09 5.1E-14 82.8 4.9 47 56-106 108-154 (159)
37 2crg_A Metastasis associated p 98.8 1E-08 3.5E-13 70.3 6.6 45 56-104 6-51 (70)
38 1ofc_X ISWI protein; nuclear p 98.8 1.1E-09 3.6E-14 93.9 1.5 92 57-151 109-228 (304)
39 2aje_A Telomere repeat-binding 98.7 1.8E-08 6E-13 74.6 6.1 50 55-107 10-63 (105)
40 2roh_A RTBP1, telomere binding 98.7 3.6E-08 1.2E-12 74.7 7.6 50 56-108 29-82 (122)
41 2juh_A Telomere binding protei 98.7 3.4E-08 1.2E-12 74.8 5.9 51 56-109 15-69 (121)
42 4a69_C Nuclear receptor corepr 98.6 5.8E-08 2E-12 70.0 6.2 44 58-105 43-86 (94)
43 2xag_B REST corepressor 1; ami 98.4 5.2E-07 1.8E-11 81.4 8.7 90 56-150 378-476 (482)
44 1ign_A Protein (RAP1); RAP1,ye 98.4 1.2E-07 4.2E-12 79.3 3.9 54 57-110 7-63 (246)
45 1x58_A Hypothetical protein 49 98.4 4E-07 1.4E-11 62.1 5.7 47 57-107 7-56 (62)
46 1ug2_A 2610100B20RIK gene prod 98.2 3.8E-06 1.3E-10 61.6 7.8 69 43-112 16-86 (95)
47 3hm5_A DNA methyltransferase 1 98.1 9E-06 3.1E-10 59.1 7.1 52 59-114 31-87 (93)
48 2lr8_A CAsp8-associated protei 97.1 1.4E-06 4.8E-11 60.8 0.0 57 54-112 10-66 (70)
49 1fex_A TRF2-interacting telome 97.7 9.3E-05 3.2E-09 49.1 6.1 47 59-105 3-55 (59)
50 2ebi_A DNA binding protein GT- 97.5 0.00019 6.7E-09 49.6 6.2 59 58-116 4-72 (86)
51 4b4c_A Chromodomain-helicase-D 97.5 0.0002 6.7E-09 56.1 6.3 51 57-108 6-58 (211)
52 4iej_A DNA methyltransferase 1 97.2 0.001 3.5E-08 48.4 7.2 52 59-114 31-87 (93)
53 2xag_B REST corepressor 1; ami 97.0 9E-05 3.1E-09 66.9 0.0 42 58-103 189-230 (482)
54 1irz_A ARR10-B; helix-turn-hel 96.4 0.01 3.6E-07 40.3 6.4 54 58-112 7-62 (64)
55 2y9y_A Imitation switch protei 95.8 0.011 3.7E-07 52.0 5.5 47 57-106 122-169 (374)
56 1ofc_X ISWI protein; nuclear p 95.4 0.036 1.2E-06 47.4 7.1 54 57-110 211-276 (304)
57 4b4c_A Chromodomain-helicase-D 94.9 0.09 3.1E-06 40.8 7.6 63 46-111 122-198 (211)
58 1ign_A Protein (RAP1); RAP1,ye 94.3 0.12 4.1E-06 43.2 7.2 40 82-121 172-221 (246)
59 2y9y_A Imitation switch protei 91.7 0.39 1.3E-05 42.2 6.9 54 58-111 228-293 (374)
60 2xb0_X Chromo domain-containin 91.1 0.65 2.2E-05 38.9 7.4 50 58-108 3-54 (270)
61 2eqr_A N-COR1, N-COR, nuclear 85.2 0.42 1.4E-05 31.0 1.9 22 130-151 7-28 (61)
62 2yqk_A Arginine-glutamic acid 83.8 0.45 1.5E-05 31.2 1.6 18 134-151 8-25 (63)
63 2crg_A Metastasis associated p 79.6 0.75 2.6E-05 30.8 1.6 22 130-151 3-24 (70)
64 2xb0_X Chromo domain-containin 74.4 2.3 7.9E-05 35.5 3.4 29 58-89 168-196 (270)
65 2hzd_A Transcriptional enhance 60.3 20 0.00067 25.2 5.4 55 56-110 4-75 (82)
66 3i4p_A Transcriptional regulat 56.9 23 0.00077 25.9 5.5 39 65-107 4-42 (162)
67 1qbj_A Protein (double-strande 52.6 33 0.0011 23.1 5.4 44 64-108 10-53 (81)
68 1qgp_A Protein (double strande 51.5 34 0.0012 22.5 5.3 45 62-107 12-56 (77)
69 2e1c_A Putative HTH-type trans 44.1 51 0.0018 24.4 5.8 42 62-108 26-67 (171)
70 2da6_A Hepatocyte nuclear fact 42.2 92 0.0031 22.3 8.1 55 57-111 9-83 (102)
71 2dbb_A Putative HTH-type trans 40.3 78 0.0027 22.2 6.1 42 62-108 8-49 (151)
72 2cxy_A BAF250B subunit, HBAF25 38.4 55 0.0019 23.5 5.0 42 82-123 73-119 (125)
73 1kkx_A Transcription regulator 38.1 1E+02 0.0035 22.3 6.5 43 69-111 53-99 (123)
74 2jxj_A Histone demethylase jar 37.1 24 0.00083 24.0 2.8 34 82-115 58-95 (96)
75 2da3_A Alpha-fetoprotein enhan 35.8 86 0.0029 20.1 5.9 51 57-108 20-70 (80)
76 2cyy_A Putative HTH-type trans 35.8 95 0.0033 21.9 5.9 42 62-108 6-47 (151)
77 2lm1_A Lysine-specific demethy 35.8 67 0.0023 22.2 5.0 35 82-116 66-104 (107)
78 2eqy_A RBP2 like, jumonji, at 34.6 1E+02 0.0035 22.1 6.0 35 82-116 64-102 (122)
79 1i1g_A Transcriptional regulat 34.2 94 0.0032 21.3 5.6 37 68-108 8-44 (141)
80 1fs1_B SKP1, cyclin A/CDK2-ass 31.6 26 0.00089 25.5 2.3 41 64-104 90-134 (141)
81 2cg4_A Regulatory protein ASNC 31.1 1.2E+02 0.0042 21.3 5.9 38 67-108 11-48 (152)
82 2hdd_A Protein (engrailed home 29.4 99 0.0034 18.8 6.4 47 58-105 7-53 (61)
83 3a02_A Homeobox protein arista 29.3 99 0.0034 18.8 6.2 49 58-107 3-51 (60)
84 2pn6_A ST1022, 150AA long hypo 28.8 1.2E+02 0.0042 21.1 5.5 38 66-107 5-42 (150)
85 2cuf_A FLJ21616 protein; homeo 28.5 1.3E+02 0.0046 20.1 9.6 58 57-115 10-82 (95)
86 2p5v_A Transcriptional regulat 28.5 1.4E+02 0.0047 21.3 5.8 43 61-108 8-50 (162)
87 2p1m_A SKP1-like protein 1A; F 27.4 31 0.0011 25.6 2.1 48 57-104 82-138 (160)
88 2e1o_A Homeobox protein PRH; D 27.3 1.2E+02 0.0041 19.1 7.8 50 57-107 10-59 (70)
89 1fjl_A Paired protein; DNA-bin 27.0 1.3E+02 0.0045 19.4 7.3 50 57-107 21-70 (81)
90 2k40_A Homeobox expressed in E 26.5 1.2E+02 0.0041 18.8 6.4 53 58-111 5-57 (67)
91 2kk0_A AT-rich interactive dom 25.9 78 0.0027 23.4 4.1 38 82-119 86-128 (145)
92 2dmu_A Homeobox protein goosec 25.8 1.3E+02 0.0043 18.9 7.6 50 58-108 11-60 (70)
93 3v7d_A Suppressor of kinetocho 25.8 46 0.0016 25.1 2.8 43 62-104 100-146 (169)
94 2jrz_A Histone demethylase jar 25.7 60 0.002 23.1 3.3 35 82-116 62-100 (117)
95 2da1_A Alpha-fetoprotein enhan 25.2 1.3E+02 0.0044 18.8 7.9 51 57-108 10-60 (70)
96 1jgg_A Segmentation protein EV 25.1 1.2E+02 0.0041 18.4 6.7 47 59-106 6-52 (60)
97 1akh_A Protein (mating-type pr 24.9 1.2E+02 0.0041 18.3 6.1 47 58-105 9-55 (61)
98 2da7_A Zinc finger homeobox pr 24.9 1.7E+02 0.0057 19.9 6.2 45 63-108 14-58 (71)
99 2ia0_A Putative HTH-type trans 24.7 1.7E+02 0.0057 21.5 5.8 43 60-107 14-56 (171)
100 2cra_A Homeobox protein HOX-B1 24.3 1.4E+02 0.0047 18.7 7.8 50 58-108 11-60 (70)
101 2ecc_A Homeobox and leucine zi 24.2 1.7E+02 0.0057 19.7 8.1 55 55-110 4-58 (76)
102 2o8x_A Probable RNA polymerase 24.2 1.2E+02 0.0041 18.0 6.4 48 59-112 14-61 (70)
103 2dn0_A Zinc fingers and homeob 24.0 1.5E+02 0.005 19.0 8.2 54 57-111 11-64 (76)
104 3kw6_A 26S protease regulatory 24.0 90 0.0031 19.8 3.7 39 66-104 9-47 (78)
105 2da2_A Alpha-fetoprotein enhan 23.9 1.4E+02 0.0047 18.6 7.8 50 57-107 10-59 (70)
106 2ast_A S-phase kinase-associat 23.4 43 0.0015 24.6 2.3 41 64-104 95-139 (159)
107 1fse_A GERE; helix-turn-helix 23.2 1.3E+02 0.0044 18.1 6.3 48 57-111 8-55 (74)
108 2cfx_A HTH-type transcriptiona 23.2 1.9E+02 0.0066 20.1 5.9 39 66-108 7-45 (144)
109 2iw5_B Protein corest, REST co 23.0 89 0.003 25.8 4.2 18 134-151 132-149 (235)
110 1bw5_A ISL-1HD, insulin gene e 22.2 1.5E+02 0.005 18.3 7.2 48 58-106 7-54 (66)
111 1or7_A Sigma-24, RNA polymeras 22.2 1.9E+02 0.0064 20.3 5.5 48 64-112 129-186 (194)
112 2dk8_A DNA-directed RNA polyme 22.1 2E+02 0.0067 19.7 5.5 41 65-108 16-56 (81)
113 2dmt_A Homeobox protein BARH-l 22.0 1.7E+02 0.0057 18.9 7.5 50 58-108 21-70 (80)
114 2dmq_A LIM/homeobox protein LH 21.7 1.6E+02 0.0056 18.7 7.8 54 57-111 10-63 (80)
115 2ys8_A RAB-related GTP-binding 21.7 1.8E+02 0.0062 19.2 6.0 47 58-110 9-55 (90)
116 1ig7_A Homeotic protein MSX-1; 21.3 1.4E+02 0.0048 17.8 7.7 47 59-106 5-51 (58)
117 2li6_A SWI/SNF chromatin-remod 21.3 58 0.002 23.1 2.5 26 82-107 71-96 (116)
118 3fp5_A Acyl-COA binding protei 21.1 89 0.0031 22.4 3.5 26 90-116 67-92 (106)
119 1hbk_A ACBP, acyl-COA binding 20.6 92 0.0031 21.3 3.3 27 84-111 58-84 (89)
No 1
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.95 E-value=6.9e-28 Score=175.44 Aligned_cols=88 Identities=55% Similarity=1.002 Sum_probs=61.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCCCCCCCCCCC
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVSRIEAGEIPLPDYKKIGGTNKAHSY 135 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk~IEsG~v~lP~y~~~~~~s~~~~~ 135 (153)
.+...||.|||++|++||++|+.++++||++||++|||||++||++||+.|++||+.||+|.||+|.|.+.+
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~~~-------- 77 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYRTTG-------- 77 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC---------------
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC--------
Confidence 345689999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred CCCCcHHHHHhhcccc
Q 041475 136 INMDNEEQRLKTLRLS 151 (153)
Q Consensus 136 ~~~~eee~rl~~l~l~ 151 (153)
..-.+|++|+++|+|+
T Consensus 78 ~~~~~~~~~~~~~~~~ 93 (93)
T 2cjj_A 78 GNMKTDEKRFRNLKIR 93 (93)
T ss_dssp ----------------
T ss_pred CCcccHHHHHhcccCC
Confidence 1233789999999885
No 2
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.90 E-value=7.9e-24 Score=147.53 Aligned_cols=66 Identities=23% Similarity=0.521 Sum_probs=62.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhhhcCCCCCCCCC
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVSRIEAGEIPLPDYK 124 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk~IEsG~v~lP~y~ 124 (153)
....||.||+++|++||++||.++++||++||+.| |||++||++||+.|.+|+ .|++|+||+|+|.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~~ 72 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSSG 72 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCCCCCCCCCC
Confidence 35689999999999999999999999999999998 999999999999999997 6899999999984
No 3
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.77 E-value=3.4e-19 Score=124.46 Aligned_cols=56 Identities=34% Similarity=0.598 Sum_probs=52.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVS 111 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk 111 (153)
.+...||.+||++|++||++|+.++++||.+||++|||||.+||+.||+.|++||.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCC
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHccc
Confidence 35578999999999999999999899999999999999999999999999999985
No 4
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.77 E-value=2.4e-19 Score=125.96 Aligned_cols=55 Identities=29% Similarity=0.506 Sum_probs=50.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVS 111 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk 111 (153)
....||.+|+++||+||+.||.++|+||++||++|||||++||++||+.|..+..
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~ 61 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKG 61 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence 3467999999999999999999999999999999999999999999999965543
No 5
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.73 E-value=1.9e-19 Score=127.16 Aligned_cols=49 Identities=49% Similarity=0.855 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHH
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEM 105 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~ 105 (153)
++..||.+|||+||+||++||+++|+||++||++|||||++||++||+.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999973
No 6
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=104.20 Aligned_cols=65 Identities=26% Similarity=0.554 Sum_probs=53.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCC--chHHHHHHHHcCCCCHHHHHHHHH-HHHHhhhhhhcCCCCCCCC
Q 041475 55 GIGRSTWTAKQNKLFENALAIYDKDT--PDRWHNLARAVGGKTVEEVKRHYE-MLAEDVSRIEAGEIPLPDY 123 (153)
Q Consensus 55 ~~s~~~WT~EEdK~LE~ALakyp~~t--p~RWekIAa~VPGKT~kqcr~Ryk-~L~eDVk~IEsG~v~lP~y 123 (153)
+.....||.|||++|+++|.+|+.++ +.+|.+||+.|||||.+||+.||. +|...+ +.| +++|++
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~---k~g-~~~pg~ 72 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLT---KAG-IPVSGP 72 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGS---TTC-SCCCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHH---hcC-CCCCCC
Confidence 34456899999999999999999754 489999999999999999999995 565443 355 578876
No 7
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.54 E-value=3.8e-15 Score=104.87 Aligned_cols=61 Identities=28% Similarity=0.501 Sum_probs=54.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHH-HHhhhhhhcCCCC
Q 041475 55 GIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEML-AEDVSRIEAGEIP 119 (153)
Q Consensus 55 ~~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L-~eDVk~IEsG~v~ 119 (153)
......||.|||++|++||.+|+ ++|.+||+.|||||..||+.||..+ ++|+..+++|--|
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~~~p 76 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYK----DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDSGP 76 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCCCCS
T ss_pred cccCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHHHhcccccccccCCCCC
Confidence 34467899999999999999999 3899999999999999999999987 8999888877544
No 8
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=9.5e-14 Score=93.17 Aligned_cols=59 Identities=17% Similarity=0.477 Sum_probs=52.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhhhcCC
Q 041475 54 NGIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVSRIEAGE 117 (153)
Q Consensus 54 n~~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk~IEsG~ 117 (153)
+......||.|||++|.+++.+|+. +|.+||+ +||||..||+.||..+......+++|.
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCCC
Confidence 3445578999999999999999985 7999999 889999999999999888888888773
No 9
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=2.3e-13 Score=90.22 Aligned_cols=48 Identities=27% Similarity=0.483 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEML 106 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L 106 (153)
.....||.|||++|.+++.+|+.+ +|.+||+.|||||.+||++||..+
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHYMKY 53 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcC---cHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345689999999999999999853 799999999999999999999965
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=2e-13 Score=89.86 Aligned_cols=52 Identities=15% Similarity=0.379 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHH-HHHhh
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEM-LAEDV 110 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~-L~eDV 110 (153)
.....||.|||++|.+++.+|+.. +|.+||+.|||||..||+.||.. |.++|
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQ---DWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTT---CHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 345689999999999999999853 79999999999999999999995 44444
No 11
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.40 E-value=4.6e-13 Score=85.77 Aligned_cols=47 Identities=13% Similarity=0.402 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLA 107 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~ 107 (153)
...||.|||++|..++.+|+.+ +|..||+.|||||..||+.||..+.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSS---CHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999863 7999999999999999999999653
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.40 E-value=5e-13 Score=88.29 Aligned_cols=45 Identities=29% Similarity=0.531 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcC-CCCHHHHHHHHHHH
Q 041475 59 STWTAKQNKLFENALAIYDKDTPDRWHNLARAVG-GKTVEEVKRHYEML 106 (153)
Q Consensus 59 ~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VP-GKT~kqcr~Ryk~L 106 (153)
..||.|||++|..++.+|+.+ +|.+||+.|| |||.+||++||..+
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~---~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLG---NWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTT---CHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcC---CHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 579999999999999999854 7999999999 99999999999864
No 13
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.37 E-value=4.2e-13 Score=97.20 Aligned_cols=45 Identities=7% Similarity=0.285 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Q 041475 59 STWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEML 106 (153)
Q Consensus 59 ~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L 106 (153)
..||.|||.+|..++.+|+.. +|..||+.|||||.+||++||...
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAK---DWIRISQLMITRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcCCCCHHHHHHHHHHH
Confidence 479999999999999999863 799999999999999999999964
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.37 E-value=1.8e-12 Score=88.52 Aligned_cols=52 Identities=27% Similarity=0.548 Sum_probs=45.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 041475 54 NGIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAED 109 (153)
Q Consensus 54 n~~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eD 109 (153)
+......||.|||++|.+++.+|+. +|.+||..|||||..||+.||..+...
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3455679999999999999999987 799999999999999999999965433
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.36 E-value=6.7e-13 Score=85.14 Aligned_cols=46 Identities=15% Similarity=0.485 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEML 106 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L 106 (153)
...||.|||++|.+++.+|+.. +|.+||..|||||.+||+.||...
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3689999999999999999863 699999999999999999999964
No 16
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7.3e-13 Score=89.72 Aligned_cols=52 Identities=17% Similarity=0.445 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHH-HHHhh
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEM-LAEDV 110 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~-L~eDV 110 (153)
.....||.|||++|..++.+|+.. +|.+||..|||||.+||++||.. |.++|
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKN---QWSRIASLLHRKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSS---CHHHHHHHSTTCCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHhcCCCHHHHHHHHHHHcCCcc
Confidence 345689999999999999999853 79999999999999999999996 44333
No 17
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.33 E-value=1.8e-12 Score=92.89 Aligned_cols=46 Identities=15% Similarity=0.471 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEML 106 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L 106 (153)
.+.||.|||++|..++.+|+.+ +|..||+.|||||.+||++||...
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhhcCCCHHHHHHHHHhc
Confidence 4689999999999999999863 799999999999999999999974
No 18
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.33 E-value=2.7e-12 Score=95.22 Aligned_cols=68 Identities=16% Similarity=0.415 Sum_probs=54.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCCCCCCCCCCC
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVSRIEAGEIPLPDYKKIGGTNKAHSY 135 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk~IEsG~v~lP~y~~~~~~s~~~~~ 135 (153)
...+.||.|||+.|..++.+|+.+ +|.+||+.|||||.+||++||..... | .. +.
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p-----~~-----~~ 79 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHLKGRIGKQCRERWHNHLN------------P-----EV-----KK 79 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHSSSCCHHHHHHHHHHTTC------------S-----SS-----CC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhcCCcHHHHHHHHHHhcc------------c-----cc-----cc
Confidence 345789999999999999999864 79999999999999999999996421 1 11 12
Q ss_pred CCCCcHHHHHhhc
Q 041475 136 INMDNEEQRLKTL 148 (153)
Q Consensus 136 ~~~~eee~rl~~l 148 (153)
-+||+||+.+.+.
T Consensus 80 ~~WT~eEd~~L~~ 92 (128)
T 1h8a_C 80 TSWTEEEDRIIYQ 92 (128)
T ss_dssp SCCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 3799999876553
No 19
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.32 E-value=3.6e-12 Score=82.24 Aligned_cols=46 Identities=13% Similarity=0.373 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcC--CCCHHHHHHHHHHHH
Q 041475 59 STWTAKQNKLFENALAIYDKDTPDRWHNLARAVG--GKTVEEVKRHYEMLA 107 (153)
Q Consensus 59 ~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VP--GKT~kqcr~Ryk~L~ 107 (153)
..||.|||.+|..++.+|+.+ +|..||..+| |||..||++||..+.
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 589999999999999999854 7999999999 999999999999874
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.31 E-value=4.3e-12 Score=85.83 Aligned_cols=48 Identities=13% Similarity=0.452 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcC--CCCHHHHHHHHHHHH
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVG--GKTVEEVKRHYEMLA 107 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VP--GKT~kqcr~Ryk~L~ 107 (153)
....||.|||++|..++.+|+.+ +|.+||+.+| |||..||++||..|.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999864 6999999988 999999999999764
No 21
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4.7e-12 Score=84.48 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=44.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHH
Q 041475 51 SFRNGIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEM 105 (153)
Q Consensus 51 ~~~n~~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~ 105 (153)
+.........||+||+++|++++++||+ +|.+||+.|||||+.||+++|-.
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHCTTSCHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHHH
Confidence 3444456789999999999999999986 69999999999999999999864
No 22
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.30 E-value=4.1e-12 Score=85.94 Aligned_cols=54 Identities=13% Similarity=0.284 Sum_probs=46.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcC--CCCHHHHHHHHHH-HHHhhh
Q 041475 55 GIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVG--GKTVEEVKRHYEM-LAEDVS 111 (153)
Q Consensus 55 ~~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VP--GKT~kqcr~Ryk~-L~eDVk 111 (153)
......||.|||.+|..++.+|+.+ +|..||+.+| |||..||+.||.. |.++|.
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI 63 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSS---CHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCC---cHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCC
Confidence 3455789999999999999999854 7999999999 9999999999995 566654
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.27 E-value=8.7e-12 Score=92.68 Aligned_cols=48 Identities=10% Similarity=0.357 Sum_probs=43.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Q 041475 55 GIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEML 106 (153)
Q Consensus 55 ~~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L 106 (153)
+.....||.|||++|..++.+|+. +|..||+.|||||.+||++||...
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNY 55 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhh
Confidence 344578999999999999999985 699999999999999999999964
No 24
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.20 E-value=1.2e-11 Score=92.26 Aligned_cols=45 Identities=7% Similarity=0.244 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Q 041475 59 STWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEML 106 (153)
Q Consensus 59 ~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L 106 (153)
+.||.|||++|..++.+|+.. +|..||+.|||||.+||++||...
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQ---NWPRITSFLPNRSPKQCRERWFNH 47 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSC---CGGGGTTSCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHCCCCHHHHHHHHhhc
Confidence 579999999999999999854 799999999999999999999864
No 25
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.18 E-value=4.2e-11 Score=91.49 Aligned_cols=69 Identities=16% Similarity=0.359 Sum_probs=55.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCCCCCCCCCCC
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVSRIEAGEIPLPDYKKIGGTNKAHSY 135 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk~IEsG~v~lP~y~~~~~~s~~~~~ 135 (153)
.....||.|||..|..++.+|+.. +|..||..|||||..||+.||..+.. | .. +.
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p-----~~-----~~ 110 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN------------P-----EV-----KK 110 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSC---CHHHHHHTSTTCCHHHHHHHHHHTTC------------T-----TS-----CC
T ss_pred cCCCCCChHHHHHHHHHHHHhCcc---cHHHHHHHcCCCCHHHHHHHHHHHhC------------c-----cc-----cc
Confidence 345789999999999999999853 79999999999999999999986421 1 11 23
Q ss_pred CCCCcHHHHHhhcc
Q 041475 136 INMDNEEQRLKTLR 149 (153)
Q Consensus 136 ~~~~eee~rl~~l~ 149 (153)
-+||+||+.+.+..
T Consensus 111 ~~WT~eEd~~L~~~ 124 (159)
T 1h89_C 111 TSWTEEEDRIIYQA 124 (159)
T ss_dssp SCCCHHHHHHHHHH
T ss_pred cCCChHHHHHHHHH
Confidence 47999999876543
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.17 E-value=6e-11 Score=85.77 Aligned_cols=52 Identities=13% Similarity=0.536 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVS 111 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk 111 (153)
...+.||.|||.+|..++.+|+. +|.+||..|||||..||+.||..|...+.
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGP----KWNKISKFLKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhCc----CHHHHHHHCCCCCHHHHHHHHHHHHhhHH
Confidence 34579999999999999999985 69999999999999999999998876654
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.14 E-value=3.2e-11 Score=84.04 Aligned_cols=52 Identities=12% Similarity=0.288 Sum_probs=45.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 041475 54 NGIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDV 110 (153)
Q Consensus 54 n~~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDV 110 (153)
+......||+|||++|.+++++|+. +|.+||+.+ |||..||+.||..|..+.
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~G~----kW~~IA~~l-gRt~~q~knRw~~L~~~~ 70 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKHGN----DWATIGAAL-GRSASSVKDRCRLMKDTC 70 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHHSS----CHHHHHHHH-TSCHHHHHHHHHHCSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC----CHHHHHHHh-CCCHHHHHHHHHHHHHHc
Confidence 3445679999999999999999986 499999999 999999999999886543
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.13 E-value=6.6e-11 Score=84.70 Aligned_cols=48 Identities=21% Similarity=0.574 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLA 107 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~ 107 (153)
.....||.|||..|..++.+|+. +|..||+.|||||..||+.||..+.
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS----CHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34578999999999999999985 7999999999999999999999763
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.10 E-value=1.2e-10 Score=86.49 Aligned_cols=51 Identities=20% Similarity=0.526 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVS 111 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk 111 (153)
....||.|||++|..++.+|+. +|.+||+.|||||..||+.||..|...+.
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR----QWAIIAKFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 4568999999999999999985 69999999999999999999999876654
No 30
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.61 E-value=2.2e-11 Score=86.76 Aligned_cols=51 Identities=27% Similarity=0.432 Sum_probs=44.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041475 53 RNGIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLA 107 (153)
Q Consensus 53 ~n~~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~ 107 (153)
.++...+.||.|||.+|..++.+|+. +|..||..|||||..||+.||..+.
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l~gRt~~q~k~r~~~~l 61 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR----NWSAIARMVGSKTVSQCKNFYFNYK 61 (89)
Confidence 33445678999999999999999986 6999999999999999999999653
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.01 E-value=2.3e-10 Score=84.70 Aligned_cols=47 Identities=23% Similarity=0.593 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEML 106 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L 106 (153)
...+.||.|||++|..++.+|+. +|.+||+.|||||..||+.||..+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS----CHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCc----CHHHHHHHCCCCCHHHHHHHHHHH
Confidence 34578999999999999999985 799999999999999999999965
No 32
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.9e-09 Score=72.43 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=42.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHH-HcCCCCHHHHHHHHH
Q 041475 53 RNGIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLAR-AVGGKTVEEVKRHYE 104 (153)
Q Consensus 53 ~n~~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa-~VPGKT~kqcr~Ryk 104 (153)
.+......||+||.++|+++|++|+++ |.+||+ .||+||+.||.+.|-
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCcHHHHHHHHh
Confidence 334456789999999999999999985 999999 499999999998884
No 33
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.94 E-value=1.5e-09 Score=77.16 Aligned_cols=47 Identities=13% Similarity=0.331 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCchHHHHHHHH----cCCCCHHHHHHHHHHHHH
Q 041475 59 STWTAKQNKLFENALAIYDKDTPDRWHNLARA----VGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 59 ~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~----VPGKT~kqcr~Ryk~L~e 108 (153)
..||.||+..|..++.+|+.+ +|.+|+.. +||||..||+.||.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 379999999999999999976 89999997 899999999999998853
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.92 E-value=1e-09 Score=81.81 Aligned_cols=48 Identities=15% Similarity=0.393 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
..+.||.|||.+|..++.+|+. +|..||..|||||..||+.||..+..
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGS----KWSVIAKLIPGRTDNAIKNRWNSSIS 100 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCS----CHHHHTTTSTTCCHHHHHHHHHHTTG
T ss_pred cCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4468999999999999999985 69999999999999999999997543
No 35
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.91 E-value=3.7e-09 Score=88.00 Aligned_cols=92 Identities=20% Similarity=0.249 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHH------HHHhhhhhhcCCCCCCCC--
Q 041475 52 FRNGIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEM------LAEDVSRIEAGEIPLPDY-- 123 (153)
Q Consensus 52 ~~n~~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~------L~eDVk~IEsG~v~lP~y-- 123 (153)
.........||.||+++|++||++|++ +|.+||..|||||..||+.+|.. |-+-|+.-++..-++..-
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~VgTKT~~QcKnfY~~~kKRlnLD~ilke~eae~g~~~~~~~ 202 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGP 202 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHHHHHHHHTC---------
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCCCC
Confidence 333445678999999999999999997 49999999999999999999984 334445555544333322
Q ss_pred -CCCCCCCCCCCCCCCCcHHHHHhhc
Q 041475 124 -KKIGGTNKAHSYINMDNEEQRLKTL 148 (153)
Q Consensus 124 -~~~~~~s~~~~~~~~~eee~rl~~l 148 (153)
.+++..+. .+++-+++||...-.|
T Consensus 203 ~~~~~~~s~-~~~~~~~~~e~~~~~~ 227 (235)
T 2iw5_B 203 SNQKPVKSP-DNSIKMPEEEDEAPVL 227 (235)
T ss_dssp --------------------------
T ss_pred CCCccccCc-CcCCCCcchhccCCcc
Confidence 12233333 4666777777766444
No 36
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.88 E-value=1.5e-09 Score=82.83 Aligned_cols=47 Identities=21% Similarity=0.591 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEML 106 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L 106 (153)
.....||.|||.+|.+++.+|+. +|.+||+.|||||..+|+.||..|
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHCC----CHHHHHHHCCCCCHHHHHHHHHHH
Confidence 45678999999999999999985 799999999999999999999975
No 37
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.80 E-value=1e-08 Score=70.31 Aligned_cols=45 Identities=29% Similarity=0.527 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHH-HcCCCCHHHHHHHHH
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLAR-AVGGKTVEEVKRHYE 104 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa-~VPGKT~kqcr~Ryk 104 (153)
.....||++|.++|+.+|++|+++ |.+||+ .||+||+.||.+.|-
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCCHHHHHHHHH
Confidence 345689999999999999999985 999999 599999999999985
No 38
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.79 E-value=1.1e-09 Score=93.86 Aligned_cols=92 Identities=28% Similarity=0.340 Sum_probs=70.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhh----------hhhhcCCCCC------
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDV----------SRIEAGEIPL------ 120 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDV----------k~IEsG~v~l------ 120 (153)
+-+.||..|...|.+|+.+|+.+ .|+.||+.|+|||.+||++.++.+.+.+ ..||.|...+
T Consensus 109 GF~~W~rrdf~~Fi~a~~kyGr~---~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~ 185 (304)
T 1ofc_X 109 GFTAWTKRDFNQFIKANEKYGRD---DIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSI 185 (304)
T ss_dssp SCTTCCHHHHHHHHHHHHHHCTT---CHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHHHhCHH---HHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999985 7999999999999999999999888887 7788884322
Q ss_pred --------CCCCCC----CCCCCCCCCCCCCcHHHHHhhcccc
Q 041475 121 --------PDYKKI----GGTNKAHSYINMDNEEQRLKTLRLS 151 (153)
Q Consensus 121 --------P~y~~~----~~~s~~~~~~~~~eee~rl~~l~l~ 151 (153)
-.|..+ ...-...++.+||+||+|..+++|.
T Consensus 186 ~~~l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~ 228 (304)
T 1ofc_X 186 KKALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLH 228 (304)
T ss_dssp HHHHHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHH
Confidence 122221 0000112566899999999998764
No 39
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.72 E-value=1.8e-08 Score=74.63 Aligned_cols=50 Identities=14% Similarity=0.291 Sum_probs=45.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHc----CCCCHHHHHHHHHHHH
Q 041475 55 GIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAV----GGKTVEEVKRHYEMLA 107 (153)
Q Consensus 55 ~~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~V----PGKT~kqcr~Ryk~L~ 107 (153)
......||.||+..|..++.+|+.+ +|..|+... +|||..||+.||..|.
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnll 63 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLV 63 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999976 899999976 8999999999999886
No 40
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.71 E-value=3.6e-08 Score=74.74 Aligned_cols=50 Identities=18% Similarity=0.318 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHc----CCCCHHHHHHHHHHHHH
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAV----GGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~V----PGKT~kqcr~Ryk~L~e 108 (153)
.....||.|||+.|..++.+|+.+ +|.+|+... +|||..||++||..+..
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 345789999999999999999976 899999985 89999999999998853
No 41
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.65 E-value=3.4e-08 Score=74.79 Aligned_cols=51 Identities=14% Similarity=0.291 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHc----CCCCHHHHHHHHHHHHHh
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAV----GGKTVEEVKRHYEMLAED 109 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~V----PGKT~kqcr~Ryk~L~eD 109 (153)
.....||.||+..|..++.+|+.+ +|.+||... +|||..||+.||+.+...
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G~G---~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHGGG---CHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 345689999999999999999965 899999995 899999999999988653
No 42
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.62 E-value=5.8e-08 Score=70.00 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHH
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEM 105 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~ 105 (153)
...||++|..+|+.++.+||+ .|.+||+.||+||+.||...|-.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK----NFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT----CHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----CHHHHHHHcCCCCHHHHHHHHhc
Confidence 468999999999999999998 49999999999999999998853
No 43
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.44 E-value=5.2e-07 Score=81.41 Aligned_cols=90 Identities=20% Similarity=0.285 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHH------HHHhhhhhhcCCCCCCCCCCC---
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEM------LAEDVSRIEAGEIPLPDYKKI--- 126 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~------L~eDVk~IEsG~v~lP~y~~~--- 126 (153)
.....||.+|..+|+++|.+|++ .|..||..|+.||+.||+.+|.. |-+-|+.-|+-.-........
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTKT~~Qvk~fy~~~kkr~~ld~il~e~e~~~~~~~~~~~~~~~ 453 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQK 453 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHHHHHHHHTC-------------
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCCCHHHHHHHHHHHHHHhChHHHHHHHHHhhCCcCCCCccccc
Confidence 34678999999999999999997 49999999999999999999964 334444444433222222111
Q ss_pred CCCCCCCCCCCCCcHHHHHhhccc
Q 041475 127 GGTNKAHSYINMDNEEQRLKTLRL 150 (153)
Q Consensus 127 ~~~s~~~~~~~~~eee~rl~~l~l 150 (153)
+..+ +.+.+-+++||...-.+.+
T Consensus 454 ~~~~-~~~~~~~~~~~~~~~~~~~ 476 (482)
T 2xag_B 454 PVKS-PDNSIKMPEEEDEAPVLDV 476 (482)
T ss_dssp ------------------------
T ss_pred cccC-CCCCCcccchhhccCchhe
Confidence 1112 2366677888877655443
No 44
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.42 E-value=1.2e-07 Score=79.34 Aligned_cols=54 Identities=9% Similarity=0.304 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCC--CchHHHHHHHHcCCCCHHHHHHHHHH-HHHhh
Q 041475 57 GRSTWTAKQNKLFENALAIYDKD--TPDRWHNLARAVGGKTVEEVKRHYEM-LAEDV 110 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~--tp~RWekIAa~VPGKT~kqcr~Ryk~-L~eDV 110 (153)
....||.|||+.|..++.++|.. +...|..||..|||||..+|+.||.. |...+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhc
Confidence 34689999999999999999863 22339999999999999999999996 65554
No 45
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.42 E-value=4e-07 Score=62.14 Aligned_cols=47 Identities=15% Similarity=0.386 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHH---HcCCCCHHHHHHHHHHHH
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLAR---AVGGKTVEEVKRHYEMLA 107 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa---~VPGKT~kqcr~Ryk~L~ 107 (153)
....||.||++.|...+.+|+. .|..|+. .++|||..+++.+|+.|.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~RT~VdLKdk~r~L~ 56 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKGRRAVDLAHKYHRLI 56 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccCcccchHHHHHHHHH
Confidence 3468999999999999999986 6999995 567999999999999984
No 46
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.25 E-value=3.8e-06 Score=61.55 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=54.1
Q ss_pred hhhhhccCC--CCCCCCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 041475 43 EFIYCTLFS--FRNGIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVSR 112 (153)
Q Consensus 43 e~~~~~~~~--~~n~~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk~ 112 (153)
++..|-.+. ...|...-.||.|||+.+.++-++-+. +++.|..||+.+.+||..||.+||+.|...+..
T Consensus 16 ~~s~~AkN~~~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 16 EATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp CCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCceeeccceecCCCCEEEEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 334454442 444556678999999999888887764 468999999999999999999999999777653
No 47
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.10 E-value=9e-06 Score=59.12 Aligned_cols=52 Identities=15% Similarity=0.358 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHc-----CCCCHHHHHHHHHHHHHhhhhhh
Q 041475 59 STWTAKQNKLFENALAIYDKDTPDRWHNLARAV-----GGKTVEEVKRHYEMLAEDVSRIE 114 (153)
Q Consensus 59 ~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~V-----PGKT~kqcr~Ryk~L~eDVk~IE 114 (153)
..||.||+..|-....+|+. ||-.|+... ++||+++++.||..++.-+....
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999997 899999999 58999999999999887776444
No 48
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.15 E-value=1.4e-06 Score=60.77 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=47.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 041475 54 NGIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVSR 112 (153)
Q Consensus 54 n~~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk~ 112 (153)
+|.-.-.||.|||..+..+.++-+. +++.|..||..+ +||+.||..||+.|..-+..
T Consensus 10 ~ge~vvlWTReeDR~IL~~cq~~G~-s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~k 66 (70)
T 2lr8_A 10 KGEIIILWTRNDDRVILLECQKRGP-SSKTFAYLAAKL-DKNPNQVSERFQQLMKLFEK 66 (70)
Confidence 3445568999999998887776654 368999999999 99999999999999776653
No 49
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.70 E-value=9.3e-05 Score=49.13 Aligned_cols=47 Identities=9% Similarity=0.195 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHhhcCC-----CCchHHHHHHH-HcCCCCHHHHHHHHHH
Q 041475 59 STWTAKQNKLFENALAIYDK-----DTPDRWHNLAR-AVGGKTVEEVKRHYEM 105 (153)
Q Consensus 59 ~~WT~EEdK~LE~ALakyp~-----~tp~RWekIAa-~VPGKT~kqcr~Ryk~ 105 (153)
..+|.|||++|...|++|.. ....-|..+|+ .+|++|-++|++||..
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 57999999999999999943 13578999999 8999999999999985
No 50
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.53 E-value=0.00019 Score=49.59 Aligned_cols=59 Identities=10% Similarity=0.262 Sum_probs=48.3
Q ss_pred CCCCCHHHHHHHHHHHhhcC------CCCchHHHHHHHHcC----CCCHHHHHHHHHHHHHhhhhhhcC
Q 041475 58 RSTWTAKQNKLFENALAIYD------KDTPDRWHNLARAVG----GKTVEEVKRHYEMLAEDVSRIEAG 116 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp------~~tp~RWekIAa~VP----GKT~kqcr~Ryk~L~eDVk~IEsG 116 (153)
...||.+|-++|..+..... ......|+.||+.|- .||++||+.+|+.|....+.+...
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999876421 223568999999976 599999999999999998877654
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.48 E-value=0.0002 Score=56.07 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHH--cCCCCHHHHHHHHHHHHH
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARA--VGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~--VPGKT~kqcr~Ryk~L~e 108 (153)
....||..|-..|.+|+.+|+. ..+||+.|++. +.+||.++|++.+..+..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~-~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~ 58 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGG-PLERLDAIARDAELVDKSETDLRRLGELVHN 58 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSS-GGGCHHHHHHHTTCTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCC-chhHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999983 24699999975 679999999987776543
No 52
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.24 E-value=0.001 Score=48.37 Aligned_cols=52 Identities=15% Similarity=0.365 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcC-----CCCHHHHHHHHHHHHHhhhhhh
Q 041475 59 STWTAKQNKLFENALAIYDKDTPDRWHNLARAVG-----GKTVEEVKRHYEMLAEDVSRIE 114 (153)
Q Consensus 59 ~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VP-----GKT~kqcr~Ryk~L~eDVk~IE 114 (153)
..||.||-..|-....+|.. ||-.|+.... +||++|+++||-.++..+.+..
T Consensus 31 ~~WT~eETd~LfdLc~~fdl----Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCC----CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 47999999999999999987 8999999974 6999999999999887776543
No 53
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.05 E-value=9e-05 Score=66.91 Aligned_cols=42 Identities=24% Similarity=0.574 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHH
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHY 103 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ry 103 (153)
...||.+|.++|+++|.+|++ .|.+|+..||+||+.||.+.|
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK----dF~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK----TFHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp ----------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc----cHHHHHHHcCCCCHHHHHHHh
Confidence 458999999999999999998 499999999999999998775
No 54
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=96.38 E-value=0.01 Score=40.31 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHc--CCCCHHHHHHHHHHHHHhhhh
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARAV--GGKTVEEVKRHYEMLAEDVSR 112 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~V--PGKT~kqcr~Ryk~L~eDVk~ 112 (153)
.-.||.|..+.|..|+.+.+.+ ...+.+|.+.| +|.|..+|+.|.+..+-.++.
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~-~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVE-RAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTT-TCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCcCCHHHHHHHHHHHHHhCCC-CCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 3579999999999999999843 34578888775 489999999999987766653
No 55
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.83 E-value=0.011 Score=51.98 Aligned_cols=47 Identities=26% Similarity=0.475 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcC-CCCHHHHHHHHHHH
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVG-GKTVEEVKRHYEML 106 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VP-GKT~kqcr~Ryk~L 106 (153)
+-..||..|=..|..|+.+|+.+ .-+.||+.|. |||.+||++.++.+
T Consensus 122 GF~~WnrrDF~~FI~a~~kyGR~---d~~~IA~ev~~~Kt~eEV~~Y~~vF 169 (374)
T 2y9y_A 122 GFTNWNKLEFRKFITVSGKYGRN---SIQAIARELAPGKTLEEVRAYAKAF 169 (374)
T ss_dssp CCCCSCHHHHHHHHHHHHHHCTT---CHHHHHSSCCCSSSHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHHHhCHh---HHHHHHHHHccCCCHHHHHHHHHHH
Confidence 45679999999999999999985 6899999998 99999999666544
No 56
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.44 E-value=0.036 Score=47.36 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcC------------CCCHHHHHHHHHHHHHhh
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVG------------GKTVEEVKRHYEMLAEDV 110 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VP------------GKT~kqcr~Ryk~L~eDV 110 (153)
....||.+||..|.-+|.+|+-+.++.|++|-..+. .||+.|+.+|-..|..-|
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 345899999999999999999988889999985543 599999999999887655
No 57
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.94 E-value=0.09 Score=40.79 Aligned_cols=63 Identities=11% Similarity=0.187 Sum_probs=45.4
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcC------------CC--CHHHHHHHHHHHHHhhh
Q 041475 46 YCTLFSFRNGIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVG------------GK--TVEEVKRHYEMLAEDVS 111 (153)
Q Consensus 46 ~~~~~~~~n~~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VP------------GK--T~kqcr~Ryk~L~eDVk 111 (153)
++...+.....-+..||.+||..|..++.+|+-+ +|+.|-.-.- .| +..++.+|..+|..-++
T Consensus 122 ~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g---~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~ 198 (211)
T 4b4c_A 122 YTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYG---SWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLS 198 (211)
T ss_dssp CCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTT---CHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHH
T ss_pred cCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcC---cHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHHH
Confidence 4444433333445679999999999999999976 7999987331 23 46789999888766553
No 58
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=94.29 E-value=0.12 Score=43.21 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=26.7
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHhh----------hhhhcCCCCCC
Q 041475 82 DRWHNLARAVGGKTVEEVKRHYEMLAEDV----------SRIEAGEIPLP 121 (153)
Q Consensus 82 ~RWekIAa~VPGKT~kqcr~Ryk~L~eDV----------k~IEsG~v~lP 121 (153)
..|..||+..|++|....+.||..++.+. +.++.|.+|=|
T Consensus 172 ~~fk~ia~~~P~HT~~SWRdRyrKfl~~~gi~~yi~yye~~~~~~~~p~~ 221 (246)
T 1ign_A 172 EFFKHFAEEHAAHTENAWRDRFRKFLLAYGIDDYISYYEAEKAQNREPEP 221 (246)
T ss_dssp THHHHHHHHTTTSCHHHHHHHHHHTHHHHCHHHHHHHHHTC-------CC
T ss_pred HHHHHHHHHCCCCChhhHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCcc
Confidence 38999999999999999999999765443 22556666644
No 59
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=91.73 E-value=0.39 Score=42.18 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHH------------cCCCCHHHHHHHHHHHHHhhh
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARA------------VGGKTVEEVKRHYEMLAEDVS 111 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~------------VPGKT~kqcr~Ryk~L~eDVk 111 (153)
...||.+||..|.-+|-+|+-+.++.|++|-.. +-.||+.++.+|-..|..-|.
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~Ie 293 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLE 293 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 568999999999999999998777899999776 345999999999999976653
No 60
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.13 E-value=0.65 Score=38.86 Aligned_cols=50 Identities=12% Similarity=0.174 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHH--cCCCCHHHHHHHHHHHHH
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARA--VGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~--VPGKT~kqcr~Ryk~L~e 108 (153)
...||..|...|.+++.+|+. ..+||+.|+.. ++.|+..++++-|..|.+
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~-~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGN-LKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSS-CTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 357999999999999999984 34699999764 567999999888886643
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.19 E-value=0.42 Score=30.97 Aligned_cols=22 Identities=5% Similarity=-0.011 Sum_probs=18.1
Q ss_pred CCCCCCCCCCcHHHHHhhcccc
Q 041475 130 NKAHSYINMDNEEQRLKTLRLS 151 (153)
Q Consensus 130 s~~~~~~~~~eee~rl~~l~l~ 151 (153)
..++...+||+||+++|..+++
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHH
Confidence 3466788999999999998765
No 62
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.85 E-value=0.45 Score=31.22 Aligned_cols=18 Identities=11% Similarity=-0.104 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHhhcccc
Q 041475 134 SYINMDNEEQRLKTLRLS 151 (153)
Q Consensus 134 ~~~~~~eee~rl~~l~l~ 151 (153)
...+||+||+++|..+|+
T Consensus 8 ~~~~WT~eE~~~Fe~~l~ 25 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLR 25 (63)
T ss_dssp CCCSCCHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 456899999999998875
No 63
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=79.62 E-value=0.75 Score=30.81 Aligned_cols=22 Identities=14% Similarity=0.019 Sum_probs=17.8
Q ss_pred CCCCCCCCCCcHHHHHhhcccc
Q 041475 130 NKAHSYINMDNEEQRLKTLRLS 151 (153)
Q Consensus 130 s~~~~~~~~~eee~rl~~l~l~ 151 (153)
+.++...+||+||+++|..||+
T Consensus 3 ~~r~~~~~WT~eE~~~Fe~~l~ 24 (70)
T 2crg_A 3 SGSSGMEEWSASEACLFEEALE 24 (70)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHH
T ss_pred CcccCCCCCCHHHHHHHHHHHH
Confidence 3345667899999999999875
No 64
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=74.41 E-value=2.3 Score=35.49 Aligned_cols=29 Identities=17% Similarity=0.455 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLAR 89 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa 89 (153)
+..|+.+||..|...+-+|+-| .|+.|-.
T Consensus 168 ~c~W~~~dD~~LLvGIykyGyG---~We~Ir~ 196 (270)
T 2xb0_X 168 SSNWTKEEDEKLLIGVFKYGYG---SWTQIRD 196 (270)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred CCCcChHHHHHHHHHHHHHcCC---cHHHHhc
Confidence 3579999999999999999987 7999974
No 65
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=60.30 E-value=20 Score=25.20 Aligned_cols=55 Identities=25% Similarity=0.381 Sum_probs=38.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCC------------chHHHHHHHHcC-----CCCHHHHHHHHHHHHHhh
Q 041475 56 IGRSTWTAKQNKLFENALAIYDKDT------------PDRWHNLARAVG-----GKTVEEVKRHYEMLAEDV 110 (153)
Q Consensus 56 ~s~~~WT~EEdK~LE~ALakyp~~t------------p~RWekIAa~VP-----GKT~kqcr~Ryk~L~eDV 110 (153)
....-|+++=..+|..||+.||+.. ..|=+-||..+= -||.+||-.|-+.|....
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~ 75 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 75 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence 3457899998899999999998631 122234444332 389999999988876543
No 66
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=56.89 E-value=23 Score=25.87 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041475 65 QNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLA 107 (153)
Q Consensus 65 EdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~ 107 (153)
-|..+..+|++-+. -.|..||+.+ |-|...|++|.+.|.
T Consensus 4 ~d~~il~~L~~~~~---~s~~~la~~l-g~s~~tv~~rl~~L~ 42 (162)
T 3i4p_A 4 LDRKILRILQEDST---LAVADLAKKV-GLSTTPCWRRIQKME 42 (162)
T ss_dssp HHHHHHHHHTTCSC---SCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC---CCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 35566677776543 4699999999 899999999999984
No 67
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=52.57 E-value=33 Score=23.13 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 64 KQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 64 EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
+-+..+..+|...+.+..-.=..||+.+ |-|...|.++-..|.+
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~L-gvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3344555788888866555678999999 7999999999888843
No 68
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=51.53 E-value=34 Score=22.52 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041475 62 TAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLA 107 (153)
Q Consensus 62 T~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~ 107 (153)
|.+.+..+..+|..-+.+..-.=..||+.+ |.|...|.++-..|.
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~ 56 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLA 56 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 345555566888888855555668999999 799999999988884
No 69
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=44.12 E-value=51 Score=24.42 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 62 TAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 62 T~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
+.. |..+..+|++.+. -.|..||+.+ |-|...|.+|.+.|.+
T Consensus 26 d~~-d~~IL~~L~~~~~---~s~~eLA~~l-glS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 26 DEI-DKKIIKILQNDGK---APLREISKIT-GLAESTIHERIRKLRE 67 (171)
T ss_dssp CHH-HHHHHHHHHHCTT---CCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 444 4455567776553 4689999999 7999999999999843
No 70
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.24 E-value=92 Score=22.25 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHc----------------C----CCCHHHHHHHHHHHHHhhh
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAV----------------G----GKTVEEVKRHYEMLAEDVS 111 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~V----------------P----GKT~kqcr~Ryk~L~eDVk 111 (153)
....||.++...||++...-+--+....+.||+.+ + +.|..+|.-=|++-....+
T Consensus 9 ~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 9 NRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 34579999999999998766544456778999999 2 5777788776665544443
No 71
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=40.28 E-value=78 Score=22.24 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 62 TAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 62 T~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
+.-+.+ +..+|+..+. -.+..||+.+ |-|...|.+|.+.|.+
T Consensus 8 d~~d~~-il~~L~~~~~---~s~~ela~~l-g~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 8 DRVDMQ-LVKILSENSR---LTYRELADIL-NTTRQRIARRIDKLKK 49 (151)
T ss_dssp CHHHHH-HHHHHHHCTT---CCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHH-HHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 334444 4466776543 4699999999 7999999999999843
No 72
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=38.43 E-value=55 Score=23.52 Aligned_cols=42 Identities=29% Similarity=0.480 Sum_probs=30.1
Q ss_pred hHHHHHHHHcCCCC----HHHHHHHHHHHHHhhhh-hhcCCCCCCCC
Q 041475 82 DRWHNLARAVGGKT----VEEVKRHYEMLAEDVSR-IEAGEIPLPDY 123 (153)
Q Consensus 82 ~RWekIAa~VPGKT----~kqcr~Ryk~L~eDVk~-IEsG~v~lP~y 123 (153)
..|..||..++--+ ...++.+|....-.... ++.|..+-|..
T Consensus 73 ~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~g~~~p~~i 119 (125)
T 2cxy_A 73 KKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEV 119 (125)
T ss_dssp TCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHHHHCCCCCCSC
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCCChhH
Confidence 48999999997433 46789999965555544 57888776654
No 73
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=38.09 E-value=1e+02 Score=22.29 Aligned_cols=43 Identities=7% Similarity=0.137 Sum_probs=30.2
Q ss_pred HHHHHhhcCC----CCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 041475 69 FENALAIYDK----DTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVS 111 (153)
Q Consensus 69 LE~ALakyp~----~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk 111 (153)
|-.++.+.+. .....|..||..+.--+...++..|..+.-...
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 4444555543 235799999999986668899999996655544
No 74
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=37.13 E-value=24 Score=24.04 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=23.1
Q ss_pred hHHHHHHHHcCCC---C-HHHHHHHHHHHHHhhhhhhc
Q 041475 82 DRWHNLARAVGGK---T-VEEVKRHYEMLAEDVSRIEA 115 (153)
Q Consensus 82 ~RWekIAa~VPGK---T-~kqcr~Ryk~L~eDVk~IEs 115 (153)
..|.+||..++-- + ..+++.+|....-......+
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE~~~~ 95 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQS 95 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHHHHHC
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHHHHhc
Confidence 5899999999632 2 56788888865555444433
No 75
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=35.81 E-value=86 Score=20.06 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
....+|.++...||.+....+--+...=+.||..+ |-|..+|+-=|++=..
T Consensus 20 ~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~ 70 (80)
T 2da3_A 20 LRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEV-GLKKRVVQVWFQNTRA 70 (80)
T ss_dssp CCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CcCHHHhHHHhHHHHH
Confidence 34568999999999998866543344457899999 7999998877765443
No 76
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=35.79 E-value=95 Score=21.90 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 62 TAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 62 T~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
+.-+.++ ..+|.+.+. -.+..||+.+ |-|..-|.+|.+.|.+
T Consensus 6 d~~~~~i-l~~L~~~~~---~s~~ela~~l-g~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 6 DEIDKKI-IKILQNDGK---APLREISKIT-GLAESTIHERIRKLRE 47 (151)
T ss_dssp CHHHHHH-HHHHHHCTT---CCHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred CHHHHHH-HHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3444444 456776543 4689999999 7999999999999843
No 77
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=35.77 E-value=67 Score=22.18 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=25.2
Q ss_pred hHHHHHHHHcCCCC----HHHHHHHHHHHHHhhhhhhcC
Q 041475 82 DRWHNLARAVGGKT----VEEVKRHYEMLAEDVSRIEAG 116 (153)
Q Consensus 82 ~RWekIAa~VPGKT----~kqcr~Ryk~L~eDVk~IEsG 116 (153)
..|..||..++--+ ..+++.+|....-......+|
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~~~~ 104 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVYTSG 104 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhc
Confidence 58999999996432 578899999766665554444
No 78
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.60 E-value=1e+02 Score=22.06 Aligned_cols=35 Identities=20% Similarity=0.453 Sum_probs=25.5
Q ss_pred hHHHHHHHHcCCCC----HHHHHHHHHHHHHhhhhhhcC
Q 041475 82 DRWHNLARAVGGKT----VEEVKRHYEMLAEDVSRIEAG 116 (153)
Q Consensus 82 ~RWekIAa~VPGKT----~kqcr~Ryk~L~eDVk~IEsG 116 (153)
..|..||..++-.+ ...++.+|....-......+|
T Consensus 64 k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~~ 102 (122)
T 2eqy_A 64 RKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLSG 102 (122)
T ss_dssp TTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhc
Confidence 58999999996422 467899999766666555555
No 79
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=34.24 E-value=94 Score=21.35 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=28.8
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 68 LFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 68 ~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
.+..+|...+. -.+..||+.+ |-|..-|.++.+.|.+
T Consensus 8 ~il~~L~~~~~---~~~~ela~~l-g~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 8 IILEILEKDAR---TPFTEIAKKL-GISETAVRKRVKALEE 44 (141)
T ss_dssp HHHHHHHHCTT---CCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 33446765543 3699999999 8999999999999854
No 80
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=31.56 E-value=26 Score=25.48 Aligned_cols=41 Identities=32% Similarity=0.432 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCCCCchH----HHHHHHHcCCCCHHHHHHHHH
Q 041475 64 KQNKLFENALAIYDKDTPDR----WHNLARAVGGKTVEEVKRHYE 104 (153)
Q Consensus 64 EEdK~LE~ALakyp~~tp~R----WekIAa~VPGKT~kqcr~Ryk 104 (153)
++..+|+-.+|..=-+-..- =..||..+-|||++|+|+.|.
T Consensus 90 d~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 90 DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 134 (141)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 45566666666442222111 258999999999999998774
No 81
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=31.09 E-value=1.2e+02 Score=21.26 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 67 KLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 67 K~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
..+..+|++.+. -.+..||+.+ |-|...|.+|.+.|.+
T Consensus 11 ~~il~~L~~~~~---~s~~ela~~l-g~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 11 RGILEALMGNAR---TAYAELAKQF-GVSPETIHVRVEKMKQ 48 (152)
T ss_dssp HHHHHHHHHCTT---SCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344456776543 4689999999 7999999999999844
No 82
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=29.43 E-value=99 Score=18.84 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHH
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEM 105 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~ 105 (153)
....|.++...||.....-+--+...=+.||..+ |-|..+|.-=|++
T Consensus 7 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqN 53 (61)
T 2hdd_A 7 RTAFSSEQLARLKREFNENRYLTERRRQQLSSEL-GLNEAQIKIWFKN 53 (61)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHHHHHhhh
Confidence 3568999999999998866544445558899999 7999998766654
No 83
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=29.26 E-value=99 Score=18.78 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLA 107 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~ 107 (153)
....|.++...||......+--+...=+.||..+ |-|..+|.-=|++=.
T Consensus 3 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR 51 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKI-GLTEARIQVWFQNRR 51 (60)
T ss_dssp --CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-CcCHHHHHHHhhhhh
Confidence 3568999999999998765543333347899999 799999987666543
No 84
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=28.84 E-value=1.2e+02 Score=21.09 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041475 66 NKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLA 107 (153)
Q Consensus 66 dK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~ 107 (153)
|..+..+|+..+ .-.+..||+.+ |-|...|.+|.+.|.
T Consensus 5 ~~~il~~L~~~~---~~~~~ela~~l-g~s~~tv~~~l~~L~ 42 (150)
T 2pn6_A 5 DLRILKILQYNA---KYSLDEIAREI-RIPKATLSYRIKKLE 42 (150)
T ss_dssp HHHHHHHHTTCT---TSCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 334445666544 34799999999 799999999999983
No 85
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=28.54 E-value=1.3e+02 Score=20.07 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCC---------------CCHHHHHHHHHHHHHhhhhhhc
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGG---------------KTVEEVKRHYEMLAEDVSRIEA 115 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPG---------------KT~kqcr~Ryk~L~eDVk~IEs 115 (153)
....||.++...||.....-+--+...=+.||..+ | -|..+|.-=|++=....+....
T Consensus 10 ~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l-~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 10 SRFTWRKECLAVMESYFNENQYPDEAKREEIANAC-NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 34579999999999998875543445558899988 5 8899998877776666655444
No 86
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=28.51 E-value=1.4e+02 Score=21.29 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 61 WTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 61 WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
-+.-+.++| .+|++.+. -.+..||+.+ |-|...|.+|.+.|.+
T Consensus 8 ld~~~~~il-~~L~~~~~---~s~~ela~~l-g~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 8 LDKTDIKIL-QVLQENGR---LTNVELSERV-ALSPSPCLRRLKQLED 50 (162)
T ss_dssp CCHHHHHHH-HHHHHCTT---CCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344454444 56776554 3689999999 7999999999999843
No 87
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=27.36 E-value=31 Score=25.58 Aligned_cols=48 Identities=27% Similarity=0.425 Sum_probs=23.3
Q ss_pred CCCCC-----CHHHHHHHHHHHhhcCCCCchH----HHHHHHHcCCCCHHHHHHHHH
Q 041475 57 GRSTW-----TAKQNKLFENALAIYDKDTPDR----WHNLARAVGGKTVEEVKRHYE 104 (153)
Q Consensus 57 s~~~W-----T~EEdK~LE~ALakyp~~tp~R----WekIAa~VPGKT~kqcr~Ryk 104 (153)
.-..| .-++..+|+-.+|..=-+-..- =..||..+-|||++|+|+.|.
T Consensus 82 ~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~ 138 (160)
T 2p1m_A 82 DLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFN 138 (160)
T ss_dssp -------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTT
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 34568 5566777777766543332211 258999999999999998764
No 88
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=27.28 E-value=1.2e+02 Score=19.05 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLA 107 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~ 107 (153)
.....|.++...||......+--+...=+.||..+ |-|..+|.-=|++=.
T Consensus 10 ~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR 59 (70)
T 2e1o_A 10 GQVRFSNDQTIELEKKFETQKYLSPPERKRLAKML-QLSERQVKTWFQNRR 59 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-CCCHHHhhHhhHhhH
Confidence 34579999999999998876544444557899999 799999987766543
No 89
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=26.98 E-value=1.3e+02 Score=19.41 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLA 107 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~ 107 (153)
.....|.++...||......+--+...=..||..+ |-|..+|.-=|++=.
T Consensus 21 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR 70 (81)
T 1fjl_A 21 SRTTFSASQLDELERAFERTQYPDIYTREELAQRT-NLTEARIQVWFQNRR 70 (81)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHh
Confidence 45579999999999998876543444457899999 799999877665543
No 90
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=26.50 E-value=1.2e+02 Score=18.82 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVS 111 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk 111 (153)
...+|.++...||.....-+--+...=+.||..+ |-|..+|.-=|++=..-.+
T Consensus 5 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~k 57 (67)
T 2k40_A 5 RTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKL-NLELDRIQIWFQNRRAKLK 57 (67)
T ss_dssp SCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CcCHHHhhHhhHhHHHHHh
Confidence 3568999999999998866544445558899999 7999999877776544433
No 91
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=25.87 E-value=78 Score=23.44 Aligned_cols=38 Identities=8% Similarity=0.146 Sum_probs=28.5
Q ss_pred hHHHHHHHHcCC-C----CHHHHHHHHHHHHHhhhhhhcCCCC
Q 041475 82 DRWHNLARAVGG-K----TVEEVKRHYEMLAEDVSRIEAGEIP 119 (153)
Q Consensus 82 ~RWekIAa~VPG-K----T~kqcr~Ryk~L~eDVk~IEsG~v~ 119 (153)
..|..||..++- . ....++..|....-.......|..+
T Consensus 86 ~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~ 128 (145)
T 2kk0_A 86 KLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSN 128 (145)
T ss_dssp TCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCC
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 689999999963 2 1568899999877777777777543
No 92
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.82 E-value=1.3e+02 Score=18.87 Aligned_cols=50 Identities=22% Similarity=0.198 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
....|.++...||.+....+--+...=+.||..+ |-|..+|.-=|++=..
T Consensus 11 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR~ 60 (70)
T 2dmu_A 11 RTIFTDEQLEALENLFQETKYPDVGTREQLARKV-HLREEKVEVWFKNRRA 60 (70)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CCCHHHeehccccccc
Confidence 4579999999999998876544445558899999 7999999876665433
No 93
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=25.78 E-value=46 Score=25.11 Aligned_cols=43 Identities=23% Similarity=0.361 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHhhcCCCCch----HHHHHHHHcCCCCHHHHHHHHH
Q 041475 62 TAKQNKLFENALAIYDKDTPD----RWHNLARAVGGKTVEEVKRHYE 104 (153)
Q Consensus 62 T~EEdK~LE~ALakyp~~tp~----RWekIAa~VPGKT~kqcr~Ryk 104 (153)
.-++..+|+-.+|..--+... -=..||..+-|||++|+|+.|.
T Consensus 100 ~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~ 146 (169)
T 3v7d_A 100 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFN 146 (169)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 455677888888866443321 2368999999999999998765
No 94
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=25.71 E-value=60 Score=23.11 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=25.1
Q ss_pred hHHHHHHHHcCCCC----HHHHHHHHHHHHHhhhhhhcC
Q 041475 82 DRWHNLARAVGGKT----VEEVKRHYEMLAEDVSRIEAG 116 (153)
Q Consensus 82 ~RWekIAa~VPGKT----~kqcr~Ryk~L~eDVk~IEsG 116 (153)
..|..||..++--+ ...++.+|....-.......|
T Consensus 62 ~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~~~~ 100 (117)
T 2jrz_A 62 RRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSG 100 (117)
T ss_dssp TTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999996432 567899999765555554444
No 95
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=25.19 E-value=1.3e+02 Score=18.76 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
.....|.++...||.+...-+--+...=+.||..+ |-|..+|.-=|++=..
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR~ 60 (70)
T 2da1_A 10 PRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKS-GLPQKVIKHWFRNTLF 60 (70)
T ss_dssp CSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHh-CCCHHHHHHHhhhhhH
Confidence 44579999999999998765443344558899999 7999999877765443
No 96
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=25.08 E-value=1.2e+02 Score=18.37 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Q 041475 59 STWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEML 106 (153)
Q Consensus 59 ~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L 106 (153)
...|.++...||.+...-+--+...=+.||..+ |-|..+|.-=|++=
T Consensus 6 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 52 (60)
T 1jgg_A 6 TAFTRDQLGRLEKEFYKENYVSRPRRCELAAQL-NLPESTIKVWFQNR 52 (60)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-CcCHHHHHHhhHHH
Confidence 568999999999998876544445558899999 79999987666543
No 97
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=24.94 E-value=1.2e+02 Score=18.32 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHH
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEM 105 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~ 105 (153)
....|.++...||......+--+...=+.||..+ |-|..+|.-=|.+
T Consensus 9 Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqN 55 (61)
T 1akh_A 9 KSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKC-GITPLQVRVWFIN 55 (61)
T ss_dssp ---CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHH-CcCHHHHHHHHHH
Confidence 3568999999999999877654445557899999 7999998765554
No 98
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.90 E-value=1.7e+02 Score=19.91 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 63 AKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 63 ~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
.++..+|+.+.++-+.-+.+.-.+||..+ |-+.+.|+-=|.+-+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~l-gL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAV-GLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHh-CCCHHHHHHHHhhccc
Confidence 46677999998988887778889999999 7888888777777654
No 99
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=24.74 E-value=1.7e+02 Score=21.47 Aligned_cols=43 Identities=9% Similarity=0.027 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041475 60 TWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLA 107 (153)
Q Consensus 60 ~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~ 107 (153)
.-+.-+.+ +..+|+.-+. -.+..||+.+ |-|...|.+|.+.|.
T Consensus 14 ~ld~~d~~-IL~~L~~~~~---~s~~eLA~~l-glS~~tv~~~l~~L~ 56 (171)
T 2ia0_A 14 HLDDLDRN-ILRLLKKDAR---LTISELSEQL-KKPESTIHFRIKKLQ 56 (171)
T ss_dssp CCCHHHHH-HHHHHHHCTT---CCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 34444444 4456766543 3689999999 799999999999983
No 100
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=24.31 E-value=1.4e+02 Score=18.75 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
....|.++...||.+...-+--+...=+.||..+ |-|..+|.-=|++=..
T Consensus 11 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNRR~ 60 (70)
T 2cra_A 11 RIPYSKGQLRELEREYAANKFITKDKRRKISAAT-SLSERQITIWFQNRRV 60 (70)
T ss_dssp CCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-CCCHHHhhHhhHhHHH
Confidence 4579999999999998866543444557899999 7999999877765443
No 101
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=24.24 E-value=1.7e+02 Score=19.68 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=41.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 041475 55 GIGRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDV 110 (153)
Q Consensus 55 ~~s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDV 110 (153)
|++....|.++...||.+...-+--+...=+.||+.+ |=|..||+-=|++-+.-.
T Consensus 4 g~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t-gLte~qIkvWFqNrR~k~ 58 (76)
T 2ecc_A 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT-GLPRPEIIQWFGDTRYAL 58 (76)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-CcCHHHhhHHhHhhHHHH
Confidence 4556789999999999998866543445558899998 899999987776655433
No 102
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=24.20 E-value=1.2e+02 Score=18.01 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 041475 59 STWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVSR 112 (153)
Q Consensus 59 ~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk~ 112 (153)
..+++.|..+|..-. -.+ -.+..||..+ |.|...|+.+.......++.
T Consensus 14 ~~L~~~~r~il~l~~---~~g--~s~~eIA~~l-gis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 14 ADLTTDQREALLLTQ---LLG--LSYADAAAVC-GCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSSCHHHHHHHHHHH---TSC--CCHHHHHHHH-TSCHHHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHHH---HcC--CCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 357788887776432 122 2589999999 79999998888876666653
No 103
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.02 E-value=1.5e+02 Score=18.97 Aligned_cols=54 Identities=9% Similarity=0.113 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVS 111 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk 111 (153)
.....|.++...||.+...-+--+...=+.||..+ |-|..+|+-=|++=..-.+
T Consensus 11 ~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqNrR~k~k 64 (76)
T 2dn0_A 11 YKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT-GLSTREVRKWFSDRRYHCR 64 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH-CCCHHHHHHHHHHHHHHSS
T ss_pred CCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CCChHHhhHHhHHHhHHHH
Confidence 35679999999999998765543334447899999 7999999887776554444
No 104
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=24.00 E-value=90 Score=19.78 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHH
Q 041475 66 NKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYE 104 (153)
Q Consensus 66 dK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk 104 (153)
.++|+..+.+++......|+.||+.-.|=|..|+..--+
T Consensus 9 ~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~ 47 (78)
T 3kw6_A 9 LDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 47 (78)
T ss_dssp HHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 347777788777554567999999999999999776444
No 105
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=23.91 E-value=1.4e+02 Score=18.63 Aligned_cols=50 Identities=10% Similarity=0.187 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLA 107 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~ 107 (153)
.....|.++...||.....-+--+...=+.||..+ |-|..+|.-=|++=.
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l-~l~~~qV~~WFqNrR 59 (70)
T 2da2_A 10 SRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLL-NLPTRVIVVWFQNAR 59 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh-CCCHHHhHHhhHhhh
Confidence 34579999999999998876544445557899999 799999987666543
No 106
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=23.41 E-value=43 Score=24.60 Aligned_cols=41 Identities=32% Similarity=0.432 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcCCCCchH----HHHHHHHcCCCCHHHHHHHHH
Q 041475 64 KQNKLFENALAIYDKDTPDR----WHNLARAVGGKTVEEVKRHYE 104 (153)
Q Consensus 64 EEdK~LE~ALakyp~~tp~R----WekIAa~VPGKT~kqcr~Ryk 104 (153)
+++.+|+-.++..--+-..- =..||..+-|||++|+|+.|.
T Consensus 95 d~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~ 139 (159)
T 2ast_A 95 DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 139 (159)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 35556666655432221111 147899999999999998764
No 107
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=23.21 E-value=1.3e+02 Score=18.06 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVS 111 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk 111 (153)
.....|+.|.+.|... . .+. .-..||+.+ |-|..-|..+...+...++
T Consensus 8 ~~~~L~~~e~~il~~~-~-~g~----s~~eIA~~l-~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 8 SKPLLTKREREVFELL-V-QDK----TTKEIASEL-FISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCCHHHHHHHHHH-T-TTC----CHHHHHHHH-TSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHH-H-cCC----CHHHHHHHH-CCCHHHHHHHHHHHHHHHC
Confidence 3457999999988773 2 121 368999999 7899999988887766654
No 108
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=23.16 E-value=1.9e+02 Score=20.09 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 66 NKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 66 dK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
|..+..+|...+. -....||+.+ |-|...|.+|.+.|.+
T Consensus 7 d~~il~~L~~~~~---~s~~ela~~l-g~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 7 DLNIIEELKKDSR---LSMRELGRKI-KLSPPSVTERVRQLES 45 (144)
T ss_dssp HHHHHHHHHHCSC---CCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3344556766543 3689999999 7999999999999843
No 109
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=23.03 E-value=89 Score=25.78 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=14.8
Q ss_pred CCCCCCcHHHHHhhcccc
Q 041475 134 SYINMDNEEQRLKTLRLS 151 (153)
Q Consensus 134 ~~~~~~eee~rl~~l~l~ 151 (153)
..-+||+||+++|+.+|.
T Consensus 132 ~s~~WTeEE~~lFleAl~ 149 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIR 149 (235)
T ss_dssp CCSSCCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 445799999999988764
No 110
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=22.20 E-value=1.5e+02 Score=18.32 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEML 106 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L 106 (153)
....|.++...||.+....+--+...=+.||..+ |-|..+|.-=|++=
T Consensus 7 Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 54 (66)
T 1bw5_A 7 RTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT-GLSPRVIRVWFQNK 54 (66)
T ss_dssp CCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH-CcCHHHHHHHhHHH
Confidence 4578999999999999876654444457899998 79999987666543
No 111
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=22.19 E-value=1.9e+02 Score=20.33 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhcCCC----------CchHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 041475 64 KQNKLFENALAIYDKD----------TPDRWHNLARAVGGKTVEEVKRHYEMLAEDVSR 112 (153)
Q Consensus 64 EEdK~LE~ALakyp~~----------tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk~ 112 (153)
+....|..+|.+.|+. ..-....||..+ |.|...|+.+.......++.
T Consensus 129 e~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 129 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHhHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 3344666777666532 123567888888 78888888887766555554
No 112
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=22.11 E-value=2e+02 Score=19.75 Aligned_cols=41 Identities=7% Similarity=0.079 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 65 QNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 65 EdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
|++ +...++++|.|-.+ +.+...+|+-++++...--+.|..
T Consensus 16 e~~-IL~l~~~~P~GItd--~~L~~~~p~~~~~~r~~aIN~LL~ 56 (81)
T 2dk8_A 16 ENR-IIELCHQFPHGITD--QVIQNEMPHIEAQQRAVAINRLLS 56 (81)
T ss_dssp HHH-HHHHHHHCSSCEEH--HHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHhCCCCCCH--HHHHHHCCCCCHHHHHHHHHHHHH
Confidence 444 44566999988655 679999999999999888887743
No 113
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.02 E-value=1.7e+02 Score=18.89 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAE 108 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~e 108 (153)
...+|.++...||.+...-+--+...=+.||..+ |-|..+|+-=|++=..
T Consensus 21 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l-~L~~~qV~vWFqNRR~ 70 (80)
T 2dmt_A 21 RTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESL-GLSQLQVKTWYQNRRM 70 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh-CCCHHHeeeccHHHHH
Confidence 3469999999999998876543444457899999 7999999877765443
No 114
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.75 E-value=1.6e+02 Score=18.74 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 041475 57 GRSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDVS 111 (153)
Q Consensus 57 s~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDVk 111 (153)
.....|.++...||......+--+...=+.||..+ |-|..+|+-=|++=..-.+
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~k 63 (80)
T 2dmq_A 10 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT-GLTKRVLQVWFQNARAKFR 63 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCCHHHhhHccHHHHHHHH
Confidence 34579999999999998876554445558999999 7999999876665444443
No 115
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.69 E-value=1.8e+02 Score=19.22 Aligned_cols=47 Identities=23% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 041475 58 RSTWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEMLAEDV 110 (153)
Q Consensus 58 ~~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L~eDV 110 (153)
.-.||.++-..+...+.. .+-++.+. .-++-|.+|++++|+.|.-.+
T Consensus 9 ~~~~s~~~~~~~~~~~~~-----~~~y~iLg-v~~~as~~eIk~aYr~la~~~ 55 (90)
T 2ys8_A 9 SASFTKEQADAIRRIRNS-----KDSWDMLG-VKPGASRDEVNKAYRKLAVLL 55 (90)
T ss_dssp CCCCCHHHHHHHHHHHTC-----SSHHHHHT-CCTTCCHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhcC-----CCHHHHcC-cCCCCCHHHHHHHHHHHHHHH
Confidence 346999998888765431 23444443 334789999999999885544
No 116
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=21.34 E-value=1.4e+02 Score=17.80 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Q 041475 59 STWTAKQNKLFENALAIYDKDTPDRWHNLARAVGGKTVEEVKRHYEML 106 (153)
Q Consensus 59 ~~WT~EEdK~LE~ALakyp~~tp~RWekIAa~VPGKT~kqcr~Ryk~L 106 (153)
...|.++...||.....-+--+...=+.||..+ |-|..+|.-=|++=
T Consensus 5 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 51 (58)
T 1ig7_A 5 TPFTTAQLLALERKFRQKQYLSIAERAEFSSSL-SLTETQVKIWFQNR 51 (58)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH-CcCHHHhhhhhhHh
Confidence 468999999999998876544445558899999 79999987766543
No 117
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=21.27 E-value=58 Score=23.12 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=20.9
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041475 82 DRWHNLARAVGGKTVEEVKRHYEMLA 107 (153)
Q Consensus 82 ~RWekIAa~VPGKT~kqcr~Ryk~L~ 107 (153)
..|..||..++--+...++.+|....
T Consensus 71 ~~W~~Va~~lg~~~~~~Lr~~Y~k~L 96 (116)
T 2li6_A 71 QQWSMVAQRLQISDYQQLESIYFRIL 96 (116)
T ss_dssp TCHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred CcHHHHHHHhCCChHHHHHHHHHHHH
Confidence 58999999997555788888888543
No 118
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=21.15 E-value=89 Score=22.35 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=21.6
Q ss_pred HcCCCCHHHHHHHHHHHHHhhhhhhcC
Q 041475 90 AVGGKTVEEVKRHYEMLAEDVSRIEAG 116 (153)
Q Consensus 90 ~VPGKT~kqcr~Ryk~L~eDVk~IEsG 116 (153)
.+.|.|.+|.+++|-.+++.+... +|
T Consensus 67 ~l~gmS~eeA~~~YI~~v~~l~~~-~~ 92 (106)
T 3fp5_A 67 SVEGTSKEVAYQKYVEKLLEILKK-AD 92 (106)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHH-HC
T ss_pred HccCCCHHHHHHHHHHHHHHHhcc-cC
Confidence 346999999999999999988755 44
No 119
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=20.64 E-value=92 Score=21.27 Aligned_cols=27 Identities=11% Similarity=0.295 Sum_probs=21.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 041475 84 WHNLARAVGGKTVEEVKRHYEMLAEDVS 111 (153)
Q Consensus 84 WekIAa~VPGKT~kqcr~Ryk~L~eDVk 111 (153)
|+.=. .+.|.|.+|.+++|-.+++.+.
T Consensus 58 w~AW~-~l~gms~eeA~~~YI~~v~~l~ 84 (89)
T 1hbk_A 58 YEAWK-SVENLNREDAQKRYVDIVSEIF 84 (89)
T ss_dssp HHHHH-HTTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHHHc
Confidence 44433 3479999999999999988874
Done!