BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041476
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 332 DIPELAQTVANECSGLPLALITTGRAMSSKKTPEEWSYAIQML---------RRSAYEFP 382
D+PE A ++ EC G PL + G + + P W Y ++ L + S+Y++
Sbjct: 311 DLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQNKQFKRIRKSSSYDYE 368
Query: 383 GMEK 386
+++
Sbjct: 369 ALDE 372
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 332 DIPELAQTVANECSGLPLALITTGRAMSSKKTPEEWSYAIQML---------RRSAYEFP 382
D+PE A ++ EC G PL + G + + P W Y ++ L + S+Y++
Sbjct: 305 DLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQNKQFKRIRKSSSYDYE 362
Query: 383 GMEK 386
+++
Sbjct: 363 ALDE 366
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 332 DIPELAQTVANECSGLPLALITTGRAMSSKKTPEEWSYAIQML---------RRSAYEFP 382
D+P A ++ EC G PL + G + + P W+Y ++ L + S+Y++
Sbjct: 305 DLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYE 362
Query: 383 GMEK 386
+++
Sbjct: 363 ALDE 366
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 332 DIPELAQTVANECSGLPLALITTGRAMSSKKTPEEWSYAIQML---------RRSAYEFP 382
D+P A ++ EC G PL + G + + P W+Y ++ L + S+Y++
Sbjct: 312 DLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYE 369
Query: 383 GMEK 386
+++
Sbjct: 370 ALDE 373
>pdb|4ITY|A Chain A, Crystal Structure Of Leishmania Mexicana Arginase
pdb|4IU0|A Chain A, Crystal Structure Of Leishmania Mexicana Arginase In
Complex With Inhibitor Abh
pdb|4IU1|A Chain A, Crystal Structure Of Leishmania Mexicana Arginase In
Complex With Inhibitor Nor-noha
pdb|4IU4|A Chain A, Crystal Structure Of Leishmania Mexicana Arginase In
Complex With Inhibitor Bec
pdb|4IU5|A Chain A, Crystal Structure Of Leishmania Mexicana Arginase In
Complex With Catalytic Product L-ornithine
Length = 330
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 327 LESHPDIPELAQTVANECSGLPLALITTGRAMSSKKTPEEWSYAIQMLRRSAYEFPGM 384
+++H DI ++ TV+ G PL+++ + + PE +S+ Q+L+ + + G+
Sbjct: 137 VDAHADINTMSGTVSGNLHGCPLSILL---GLDRENIPECFSWVPQVLKPNKIAYIGL 191
>pdb|4DB3|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of
N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus
Length = 327
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 127 ATLMDEGAFE-----VVAEKVPQPAVDEKPLQPTIVGLESTFDKVWRC 169
T ++ GAF V E+VP P D L TI GL + +D+ + C
Sbjct: 33 GTKIEFGAFNEKLERVATERVPTPTDDYPLLLETIAGLVAKYDQEFAC 80
>pdb|1WST|A Chain A, Crystal Structure Of Multiple Substrate Aminotransferase
(Msat) From Thermococcus Profundus
Length = 417
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 280 RNASKIVFTTRLVDVCGLMEAQKTFKVECLADQDAWELFQKKVGEETLESHPD 332
R K+V T+ ++ + G + A +TF VE + KK+ E LE H D
Sbjct: 32 RELLKLVETSDVISLAGGLPAPETFPVETI----------KKIAVEVLEEHAD 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,128,831
Number of Sequences: 62578
Number of extensions: 349992
Number of successful extensions: 878
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 871
Number of HSP's gapped (non-prelim): 19
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)