Query 041476
Match_columns 397
No_of_seqs 287 out of 2530
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:30:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.5E-55 9.8E-60 450.1 34.0 375 14-397 8-406 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 4.2E-40 9.2E-45 305.8 16.9 237 159-397 1-245 (287)
3 PLN03210 Resistant to P. syrin 100.0 3.4E-32 7.4E-37 293.9 25.8 231 154-397 184-431 (1153)
4 TIGR03015 pepcterm_ATPase puta 99.5 1.8E-11 3.9E-16 112.5 24.9 197 173-374 41-266 (269)
5 PF01637 Arch_ATPase: Archaeal 99.5 2.4E-13 5.2E-18 121.9 10.2 191 156-353 1-233 (234)
6 PRK00411 cdc6 cell division co 99.5 1.3E-11 2.7E-16 119.9 22.3 220 153-375 29-283 (394)
7 TIGR02928 orc1/cdc6 family rep 99.3 1.8E-10 3.8E-15 110.7 20.8 223 153-375 14-275 (365)
8 PF05729 NACHT: NACHT domain 99.3 2.2E-11 4.8E-16 103.1 10.2 142 176-322 1-163 (166)
9 PRK04841 transcriptional regul 99.3 2.3E-10 5E-15 122.9 18.9 192 153-360 13-231 (903)
10 TIGR00635 ruvB Holliday juncti 99.2 1.5E-09 3.2E-14 101.6 19.5 204 154-375 4-230 (305)
11 PRK00080 ruvB Holliday junctio 99.1 5.1E-09 1.1E-13 98.9 20.0 186 154-356 25-224 (328)
12 COG2256 MGS1 ATPase related to 99.1 2.5E-09 5.5E-14 99.0 16.0 171 154-354 30-212 (436)
13 PRK13342 recombination factor 99.1 4.6E-09 1E-13 102.2 17.5 178 154-358 12-200 (413)
14 PRK06893 DNA replication initi 99.1 1.6E-09 3.5E-14 96.8 12.9 155 174-358 38-207 (229)
15 TIGR03420 DnaA_homol_Hda DnaA 99.0 5.9E-09 1.3E-13 93.2 12.9 169 159-357 22-204 (226)
16 KOG2028 ATPase related to the 99.0 1.2E-08 2.7E-13 93.0 14.5 163 166-350 153-332 (554)
17 PF13173 AAA_14: AAA domain 98.9 5.1E-09 1.1E-13 84.8 7.5 120 175-314 2-127 (128)
18 PRK07003 DNA polymerase III su 98.9 1E-07 2.3E-12 96.1 17.4 190 154-355 16-222 (830)
19 TIGR02903 spore_lon_C ATP-depe 98.9 2.3E-06 5E-11 87.1 26.9 199 154-357 154-398 (615)
20 PRK12402 replication factor C 98.8 7.8E-08 1.7E-12 91.3 15.2 195 154-356 15-228 (337)
21 COG1474 CDC6 Cdc6-related prot 98.8 4.8E-07 1E-11 86.0 20.1 196 154-354 17-238 (366)
22 PRK05564 DNA polymerase III su 98.8 1.4E-07 3E-12 88.5 16.4 175 155-352 5-188 (313)
23 cd00009 AAA The AAA+ (ATPases 98.8 4E-08 8.6E-13 80.9 11.3 123 157-293 1-131 (151)
24 COG3899 Predicted ATPase [Gene 98.8 6.1E-08 1.3E-12 101.8 15.1 200 156-360 2-266 (849)
25 PTZ00112 origin recognition co 98.8 8.2E-08 1.8E-12 97.6 15.1 219 153-374 754-1006(1164)
26 PRK14963 DNA polymerase III su 98.8 6E-08 1.3E-12 96.0 13.9 192 154-352 14-215 (504)
27 PRK14949 DNA polymerase III su 98.8 1.5E-07 3.3E-12 96.7 17.0 180 154-354 16-220 (944)
28 PRK08727 hypothetical protein; 98.8 1.2E-07 2.6E-12 85.0 14.2 168 157-353 23-203 (233)
29 PLN03025 replication factor C 98.8 1.4E-07 2.9E-12 88.9 14.9 180 155-352 14-198 (319)
30 PRK12323 DNA polymerase III su 98.8 1.7E-07 3.7E-12 93.4 15.8 192 154-354 16-225 (700)
31 PRK00440 rfc replication facto 98.8 3.4E-07 7.4E-12 86.2 17.5 181 154-354 17-203 (319)
32 PRK08084 DNA replication initi 98.8 1.4E-07 3.1E-12 84.5 14.0 176 154-358 23-213 (235)
33 PRK14956 DNA polymerase III su 98.8 1.4E-07 3E-12 91.5 13.9 193 154-354 18-222 (484)
34 PF05496 RuvB_N: Holliday junc 98.8 6.6E-08 1.4E-12 83.9 10.5 174 154-357 24-224 (233)
35 COG2909 MalT ATP-dependent tra 98.8 3.8E-07 8.1E-12 92.1 17.1 194 154-361 19-240 (894)
36 PF13401 AAA_22: AAA domain; P 98.7 2.4E-08 5.2E-13 81.0 7.1 114 175-291 4-125 (131)
37 PRK13341 recombination factor 98.7 1.8E-07 3.9E-12 96.2 14.9 172 155-353 29-216 (725)
38 PRK14961 DNA polymerase III su 98.7 7E-07 1.5E-11 85.5 17.9 186 154-352 16-218 (363)
39 PRK09087 hypothetical protein; 98.7 2.8E-07 6.1E-12 82.0 14.1 160 174-372 43-220 (226)
40 cd01128 rho_factor Transcripti 98.7 2.8E-08 6.1E-13 89.3 7.7 96 167-264 7-114 (249)
41 PRK04195 replication factor C 98.7 6.3E-07 1.4E-11 89.1 17.6 182 154-360 14-208 (482)
42 PRK06645 DNA polymerase III su 98.7 9E-07 1.9E-11 87.4 18.2 190 155-353 22-228 (507)
43 PRK14960 DNA polymerase III su 98.7 4.7E-07 1E-11 90.5 16.1 188 154-353 15-218 (702)
44 PF13191 AAA_16: AAA ATPase do 98.7 4.7E-08 1E-12 84.2 7.5 44 156-199 2-48 (185)
45 PTZ00202 tuzin; Provisional 98.7 4E-07 8.7E-12 86.2 14.0 159 153-322 261-434 (550)
46 PRK05642 DNA replication initi 98.7 4.5E-07 9.8E-12 81.3 13.4 154 175-358 45-212 (234)
47 PRK14957 DNA polymerase III su 98.7 1.1E-06 2.4E-11 87.3 17.2 181 154-354 16-221 (546)
48 PRK14962 DNA polymerase III su 98.6 1.4E-06 3.1E-11 85.6 16.8 198 154-370 14-238 (472)
49 PRK08903 DnaA regulatory inact 98.6 7.5E-07 1.6E-11 79.6 13.7 169 157-359 22-204 (227)
50 PRK07994 DNA polymerase III su 98.6 1.1E-06 2.4E-11 88.8 16.2 189 154-354 16-220 (647)
51 TIGR02397 dnaX_nterm DNA polym 98.6 2.7E-06 6E-11 81.4 18.4 182 154-355 14-219 (355)
52 PRK07940 DNA polymerase III su 98.6 1.7E-06 3.7E-11 83.1 16.6 170 154-352 5-211 (394)
53 TIGR00678 holB DNA polymerase 98.6 2.9E-06 6.2E-11 73.5 16.2 160 165-350 3-187 (188)
54 PRK14964 DNA polymerase III su 98.6 2.4E-06 5.2E-11 83.8 17.3 181 154-353 13-216 (491)
55 PRK07471 DNA polymerase III su 98.6 2.8E-07 6.2E-12 87.6 10.6 189 154-354 19-238 (365)
56 PRK14951 DNA polymerase III su 98.6 2.1E-06 4.5E-11 86.6 17.2 193 154-354 16-225 (618)
57 PRK08691 DNA polymerase III su 98.6 1.4E-06 3E-11 87.9 15.5 178 154-355 16-221 (709)
58 PRK14955 DNA polymerase III su 98.6 1.7E-06 3.7E-11 83.8 15.9 194 154-353 16-227 (397)
59 TIGR01242 26Sp45 26S proteasom 98.6 1.9E-07 4.1E-12 89.6 9.2 171 154-348 122-328 (364)
60 PRK14958 DNA polymerase III su 98.6 1.7E-06 3.7E-11 86.0 16.1 182 154-354 16-220 (509)
61 PRK09112 DNA polymerase III su 98.6 2.5E-06 5.4E-11 80.8 16.4 192 154-355 23-241 (351)
62 PRK05896 DNA polymerase III su 98.5 2E-06 4.3E-11 85.8 14.9 190 154-356 16-223 (605)
63 PRK07764 DNA polymerase III su 98.5 3.5E-06 7.5E-11 87.9 17.2 184 155-351 16-218 (824)
64 PRK14959 DNA polymerase III su 98.5 6.8E-06 1.5E-10 82.5 18.3 192 154-358 16-225 (624)
65 PRK14970 DNA polymerase III su 98.5 6.5E-06 1.4E-10 79.2 17.2 179 154-351 17-206 (367)
66 PRK09376 rho transcription ter 98.5 2E-07 4.4E-12 87.6 6.5 97 165-263 158-266 (416)
67 PRK14969 DNA polymerase III su 98.5 4.4E-06 9.5E-11 83.6 16.3 178 154-350 16-216 (527)
68 TIGR03345 VI_ClpV1 type VI sec 98.5 1.7E-06 3.8E-11 91.0 13.9 181 154-348 187-390 (852)
69 KOG0989 Replication factor C, 98.5 1.6E-06 3.6E-11 77.8 11.4 181 154-348 36-224 (346)
70 PF00308 Bac_DnaA: Bacterial d 98.5 1.3E-06 2.8E-11 77.5 10.9 183 154-354 9-208 (219)
71 PF14516 AAA_35: AAA-like doma 98.5 2.6E-05 5.7E-10 73.6 20.3 197 154-361 11-246 (331)
72 PRK14087 dnaA chromosomal repl 98.5 2E-06 4.4E-11 84.3 12.9 166 175-355 141-320 (450)
73 PRK14952 DNA polymerase III su 98.5 1.1E-05 2.4E-10 81.0 18.0 188 154-354 13-220 (584)
74 PRK09111 DNA polymerase III su 98.4 8.5E-06 1.8E-10 82.3 16.7 192 154-355 24-234 (598)
75 PRK14954 DNA polymerase III su 98.4 1.2E-05 2.6E-10 81.4 17.7 190 154-349 16-223 (620)
76 TIGR02881 spore_V_K stage V sp 98.4 4.5E-06 9.7E-11 76.3 13.0 153 155-324 7-193 (261)
77 TIGR02880 cbbX_cfxQ probable R 98.4 4.5E-06 9.8E-11 77.0 13.0 132 177-324 60-210 (284)
78 PRK06620 hypothetical protein; 98.4 5.6E-06 1.2E-10 73.0 13.0 136 176-354 45-189 (214)
79 KOG2227 Pre-initiation complex 98.4 2.9E-05 6.3E-10 73.7 17.3 171 153-324 149-340 (529)
80 PF05621 TniB: Bacterial TniB 98.4 2.7E-05 5.8E-10 70.9 16.5 192 162-355 45-262 (302)
81 PRK14950 DNA polymerase III su 98.4 9.6E-06 2.1E-10 82.4 15.3 190 154-355 16-222 (585)
82 PRK14971 DNA polymerase III su 98.4 1.9E-05 4.1E-10 80.3 17.3 179 154-352 17-220 (614)
83 PRK03992 proteasome-activating 98.4 1.9E-05 4.1E-10 76.3 16.5 200 154-377 131-375 (389)
84 CHL00181 cbbX CbbX; Provisiona 98.4 2.1E-05 4.5E-10 72.6 15.8 132 177-324 61-211 (287)
85 PRK06305 DNA polymerase III su 98.3 2.1E-05 4.5E-10 77.3 16.5 176 154-349 17-217 (451)
86 COG2255 RuvB Holliday junction 98.3 1.4E-05 3E-10 71.2 13.4 210 154-393 26-270 (332)
87 COG3903 Predicted ATPase [Gene 98.3 5.6E-07 1.2E-11 84.2 4.8 178 174-360 13-195 (414)
88 PRK08451 DNA polymerase III su 98.3 3.3E-05 7.1E-10 76.7 17.2 178 154-354 14-218 (535)
89 PRK11331 5-methylcytosine-spec 98.3 5.7E-06 1.2E-10 79.6 11.4 107 154-264 175-283 (459)
90 TIGR00362 DnaA chromosomal rep 98.3 2.7E-05 5.9E-10 75.9 16.4 181 175-374 136-337 (405)
91 TIGR00767 rho transcription te 98.3 3.8E-06 8.2E-11 79.5 9.7 89 174-264 167-266 (415)
92 PRK06647 DNA polymerase III su 98.3 5.5E-05 1.2E-09 76.1 18.6 192 154-354 16-220 (563)
93 PHA02544 44 clamp loader, smal 98.3 9.9E-06 2.2E-10 76.2 12.7 145 154-320 21-171 (316)
94 PRK14953 DNA polymerase III su 98.3 5.7E-05 1.2E-09 74.7 18.3 178 154-355 16-221 (486)
95 PRK00149 dnaA chromosomal repl 98.3 1.9E-05 4.1E-10 78.0 14.7 182 175-374 148-349 (450)
96 TIGR02639 ClpA ATP-dependent C 98.3 1.1E-05 2.4E-10 84.3 13.5 155 155-322 183-358 (731)
97 PRK14088 dnaA chromosomal repl 98.3 9.3E-06 2E-10 79.6 12.0 182 175-374 130-332 (440)
98 PRK07133 DNA polymerase III su 98.3 5.1E-05 1.1E-09 77.5 17.4 183 154-351 18-216 (725)
99 COG1373 Predicted ATPase (AAA+ 98.3 1.2E-05 2.5E-10 77.8 12.3 192 160-375 23-247 (398)
100 PTZ00454 26S protease regulato 98.2 3.2E-05 6.9E-10 74.6 14.9 198 154-374 145-386 (398)
101 PRK12422 chromosomal replicati 98.2 3.7E-05 8.1E-10 75.2 15.0 153 175-348 141-307 (445)
102 PRK05563 DNA polymerase III su 98.2 0.0001 2.3E-09 74.3 18.6 186 154-352 16-218 (559)
103 PRK14086 dnaA chromosomal repl 98.2 8E-05 1.7E-09 74.6 16.9 157 176-351 315-485 (617)
104 CHL00095 clpC Clp protease ATP 98.2 2.5E-05 5.5E-10 82.6 14.3 179 154-346 179-379 (821)
105 PTZ00361 26 proteosome regulat 98.2 1.3E-05 2.8E-10 77.8 11.2 196 155-374 184-424 (438)
106 PRK14948 DNA polymerase III su 98.2 0.0001 2.2E-09 75.0 18.0 190 154-354 16-222 (620)
107 TIGR01241 FtsH_fam ATP-depende 98.2 5.2E-05 1.1E-09 75.8 15.1 198 155-375 56-296 (495)
108 TIGR03346 chaperone_ClpB ATP-d 98.1 3.9E-05 8.5E-10 81.4 14.7 154 155-322 174-349 (852)
109 COG3267 ExeA Type II secretory 98.1 0.00025 5.4E-09 62.6 16.7 178 173-355 49-246 (269)
110 COG1222 RPT1 ATP-dependent 26S 98.1 5.4E-05 1.2E-09 69.7 12.9 194 156-376 153-394 (406)
111 PRK10865 protein disaggregatio 98.1 3.1E-05 6.7E-10 82.0 13.1 155 154-322 178-354 (857)
112 TIGR03689 pup_AAA proteasome A 98.1 3.7E-05 7.9E-10 75.9 12.7 159 155-323 183-379 (512)
113 PRK14965 DNA polymerase III su 98.1 0.00012 2.6E-09 74.2 16.7 188 154-354 16-221 (576)
114 PRK07399 DNA polymerase III su 98.1 0.00021 4.5E-09 66.8 16.8 192 155-355 5-222 (314)
115 PRK11034 clpA ATP-dependent Cl 98.1 2.1E-05 4.5E-10 81.6 10.6 155 155-322 187-362 (758)
116 TIGR00763 lon ATP-dependent pr 98.1 0.00046 9.9E-09 72.7 20.7 157 154-322 320-505 (775)
117 KOG0991 Replication factor C, 98.0 7.5E-05 1.6E-09 64.7 11.6 45 155-199 28-72 (333)
118 KOG2543 Origin recognition com 98.0 4.5E-05 9.8E-10 70.7 9.9 163 153-321 5-192 (438)
119 PF00004 AAA: ATPase family as 98.0 2.7E-05 5.8E-10 62.9 7.5 22 178-199 1-22 (132)
120 CHL00176 ftsH cell division pr 98.0 0.00028 6.2E-09 72.0 16.3 198 154-374 183-423 (638)
121 PRK05707 DNA polymerase III su 98.0 0.00036 7.8E-09 65.6 15.8 154 175-354 22-203 (328)
122 smart00382 AAA ATPases associa 97.9 5.2E-05 1.1E-09 61.5 8.7 87 175-265 2-90 (148)
123 PRK08116 hypothetical protein; 97.9 1.8E-05 4E-10 72.3 6.4 102 176-292 115-221 (268)
124 TIGR00602 rad24 checkpoint pro 97.9 5.7E-05 1.2E-09 76.5 10.4 199 154-358 84-327 (637)
125 PRK08058 DNA polymerase III su 97.9 0.00042 9.2E-09 65.4 15.6 145 155-320 6-180 (329)
126 COG0593 DnaA ATPase involved i 97.9 0.0001 2.2E-09 70.3 11.4 140 174-330 112-265 (408)
127 PRK10536 hypothetical protein; 97.9 0.00026 5.7E-09 63.3 12.9 133 155-294 56-215 (262)
128 PF05673 DUF815: Protein of un 97.9 0.00052 1.1E-08 60.7 14.5 46 154-199 27-76 (249)
129 PF10443 RNA12: RNA12 protein; 97.9 0.00048 1E-08 65.7 14.7 194 159-364 1-288 (431)
130 COG0466 Lon ATP-dependent Lon 97.9 0.0021 4.6E-08 64.6 19.7 157 155-322 324-508 (782)
131 CHL00195 ycf46 Ycf46; Provisio 97.8 0.00019 4.1E-09 70.9 12.1 172 155-348 229-429 (489)
132 PRK08118 topology modulation p 97.8 1.1E-05 2.3E-10 68.4 3.0 36 176-211 2-37 (167)
133 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00052 1.1E-08 67.4 14.6 168 155-347 191-395 (802)
134 PRK10787 DNA-binding ATP-depen 97.8 0.00069 1.5E-08 71.0 16.4 160 153-323 321-507 (784)
135 PRK06835 DNA replication prote 97.8 0.0012 2.6E-08 62.1 16.1 37 175-214 183-219 (329)
136 TIGR01243 CDC48 AAA family ATP 97.8 0.00025 5.4E-09 74.4 12.9 170 155-348 179-381 (733)
137 PLN00020 ribulose bisphosphate 97.8 0.0005 1.1E-08 64.4 13.0 146 174-349 147-333 (413)
138 COG2812 DnaX DNA polymerase II 97.7 0.00041 8.9E-09 68.3 12.3 179 155-346 17-212 (515)
139 PF04665 Pox_A32: Poxvirus A32 97.7 8.7E-05 1.9E-09 65.9 6.9 36 176-214 14-49 (241)
140 TIGR02640 gas_vesic_GvpN gas v 97.7 0.00073 1.6E-08 61.7 12.7 56 162-225 10-65 (262)
141 TIGR02639 ClpA ATP-dependent C 97.7 0.00058 1.3E-08 71.5 13.5 46 154-199 454-508 (731)
142 PRK12608 transcription termina 97.7 0.00036 7.9E-09 65.8 10.7 100 162-263 119-230 (380)
143 KOG0741 AAA+-type ATPase [Post 97.7 0.002 4.3E-08 62.5 15.5 157 174-359 537-717 (744)
144 COG0542 clpA ATP-binding subun 97.7 0.0027 5.8E-08 65.3 17.5 108 154-271 491-613 (786)
145 PRK12377 putative replication 97.7 0.00053 1.2E-08 61.7 11.2 74 174-263 100-173 (248)
146 KOG2004 Mitochondrial ATP-depe 97.7 0.0056 1.2E-07 61.5 18.9 154 155-322 412-596 (906)
147 COG1223 Predicted ATPase (AAA+ 97.7 0.00041 8.8E-09 61.3 9.9 168 154-348 121-319 (368)
148 PRK08769 DNA polymerase III su 97.6 0.0028 6.1E-08 59.2 16.1 171 161-354 11-208 (319)
149 PRK10865 protein disaggregatio 97.6 0.0005 1.1E-08 73.0 12.4 46 154-199 568-622 (857)
150 KOG2228 Origin recognition com 97.6 0.00089 1.9E-08 61.4 12.1 166 154-323 24-220 (408)
151 PF00448 SRP54: SRP54-type pro 97.6 0.0003 6.5E-09 61.1 8.7 85 175-262 1-92 (196)
152 KOG0744 AAA+-type ATPase [Post 97.6 0.00061 1.3E-08 62.0 10.7 133 175-322 177-340 (423)
153 PRK07261 topology modulation p 97.6 0.00019 4.2E-09 61.0 7.3 67 177-264 2-68 (171)
154 PF13177 DNA_pol3_delta2: DNA 97.6 0.00068 1.5E-08 57.0 10.4 135 158-310 1-162 (162)
155 TIGR02237 recomb_radB DNA repa 97.6 0.00039 8.4E-09 61.2 9.2 86 174-263 11-107 (209)
156 PHA00729 NTP-binding motif con 97.6 0.00037 8.1E-09 61.3 8.8 35 165-199 7-41 (226)
157 TIGR01243 CDC48 AAA family ATP 97.6 0.0016 3.5E-08 68.4 14.9 169 155-348 454-657 (733)
158 TIGR02902 spore_lonB ATP-depen 97.5 0.00075 1.6E-08 67.9 11.6 45 155-199 66-110 (531)
159 PRK06871 DNA polymerase III su 97.5 0.0065 1.4E-07 56.9 17.0 172 162-351 10-200 (325)
160 PRK08181 transposase; Validate 97.5 0.00014 3.1E-09 66.2 5.8 106 168-293 101-210 (269)
161 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00029 6.3E-09 74.5 8.0 47 153-199 565-620 (852)
162 TIGR02012 tigrfam_recA protein 97.5 0.00042 9.1E-09 64.5 8.1 82 174-263 54-143 (321)
163 PRK09361 radB DNA repair and r 97.5 0.00064 1.4E-08 60.6 9.1 85 174-263 22-117 (225)
164 cd01393 recA_like RecA is a b 97.5 0.0011 2.5E-08 58.9 10.7 88 174-263 18-124 (226)
165 cd00983 recA RecA is a bacter 97.5 0.00041 9E-09 64.6 7.9 82 174-263 54-143 (325)
166 PRK06526 transposase; Provisio 97.5 0.00013 2.9E-09 65.9 4.4 74 174-264 97-170 (254)
167 PRK06090 DNA polymerase III su 97.4 0.009 1.9E-07 55.8 16.5 163 162-354 11-201 (319)
168 PF02562 PhoH: PhoH-like prote 97.4 0.00049 1.1E-08 59.8 7.5 129 158-293 4-157 (205)
169 PRK09354 recA recombinase A; P 97.4 0.0006 1.3E-08 64.1 8.4 82 174-263 59-148 (349)
170 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00085 1.8E-08 60.1 9.2 88 174-263 18-125 (235)
171 PRK06921 hypothetical protein; 97.4 0.00041 8.9E-09 63.3 7.2 39 174-214 116-154 (266)
172 TIGR01069 mutS2 MutS2 family p 97.4 0.001 2.3E-08 69.5 11.0 180 174-377 321-523 (771)
173 PRK07993 DNA polymerase III su 97.4 0.0081 1.7E-07 56.7 16.0 163 162-351 10-201 (334)
174 PF13207 AAA_17: AAA domain; P 97.4 0.00013 2.8E-09 58.1 3.4 23 177-199 1-23 (121)
175 PRK04132 replication factor C 97.4 0.0049 1.1E-07 64.6 15.6 155 183-356 574-733 (846)
176 KOG0730 AAA+-type ATPase [Post 97.4 0.0035 7.6E-08 62.4 13.5 143 174-336 467-629 (693)
177 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00076 1.7E-08 71.8 9.5 46 154-199 565-619 (852)
178 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00026 5.6E-09 66.5 5.2 45 155-199 52-102 (361)
179 PRK06964 DNA polymerase III su 97.4 0.013 2.8E-07 55.3 16.6 89 252-352 131-223 (342)
180 PRK07952 DNA replication prote 97.4 0.0012 2.7E-08 59.2 9.4 75 175-264 99-173 (244)
181 KOG0731 AAA+-type ATPase conta 97.4 0.0031 6.8E-08 64.4 13.1 174 155-351 312-521 (774)
182 KOG0743 AAA+-type ATPase [Post 97.4 0.059 1.3E-06 51.7 20.8 167 176-377 236-434 (457)
183 cd01131 PilT Pilus retraction 97.4 0.00034 7.3E-09 61.1 5.6 111 176-296 2-113 (198)
184 KOG0735 AAA+-type ATPase [Post 97.4 0.0019 4.1E-08 64.7 11.2 151 174-347 430-608 (952)
185 PRK09183 transposase/IS protei 97.3 0.00032 7E-09 63.8 5.5 25 175-199 102-126 (259)
186 PF07693 KAP_NTPase: KAP famil 97.3 0.0076 1.7E-07 56.8 15.2 40 160-199 2-44 (325)
187 KOG1514 Origin recognition com 97.3 0.01 2.2E-07 59.7 16.1 199 154-353 396-620 (767)
188 cd01394 radB RadB. The archaea 97.3 0.0025 5.5E-08 56.4 11.1 85 174-263 18-113 (218)
189 PRK06762 hypothetical protein; 97.3 0.0037 8E-08 52.7 11.7 25 175-199 2-26 (166)
190 PF08423 Rad51: Rad51; InterP 97.3 0.0016 3.5E-08 59.1 9.9 88 175-263 38-143 (256)
191 KOG0736 Peroxisome assembly fa 97.3 0.018 3.9E-07 58.5 17.7 92 154-264 672-775 (953)
192 KOG2035 Replication factor C, 97.3 0.0077 1.7E-07 53.9 13.5 207 156-377 15-261 (351)
193 PRK08939 primosomal protein Dn 97.3 0.00071 1.5E-08 63.0 7.6 117 158-291 135-260 (306)
194 cd01120 RecA-like_NTPases RecA 97.3 0.0016 3.4E-08 54.3 9.2 39 177-218 1-39 (165)
195 cd01133 F1-ATPase_beta F1 ATP 97.3 0.00097 2.1E-08 60.5 8.1 88 174-264 68-174 (274)
196 KOG0728 26S proteasome regulat 97.3 0.0069 1.5E-07 53.4 12.9 196 156-374 148-388 (404)
197 COG0470 HolB ATPase involved i 97.3 0.0024 5.1E-08 60.2 10.7 140 156-310 3-169 (325)
198 PRK05541 adenylylsulfate kinas 97.3 0.00083 1.8E-08 57.4 6.9 36 174-212 6-41 (176)
199 PRK12727 flagellar biosynthesi 97.3 0.015 3.2E-07 57.6 16.2 86 175-263 350-438 (559)
200 PRK11034 clpA ATP-dependent Cl 97.3 0.00081 1.8E-08 70.0 8.0 46 154-199 458-512 (758)
201 COG2884 FtsE Predicted ATPase 97.2 0.0021 4.6E-08 54.3 8.6 121 174-299 27-204 (223)
202 TIGR02238 recomb_DMC1 meiotic 97.2 0.0026 5.6E-08 59.4 10.2 89 174-263 95-201 (313)
203 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0069 1.5E-07 59.9 13.1 153 174-347 544-717 (802)
204 PRK10733 hflB ATP-dependent me 97.2 0.0067 1.4E-07 62.6 14.0 148 176-346 186-355 (644)
205 PLN03187 meiotic recombination 97.2 0.0016 3.4E-08 61.5 8.6 89 174-263 125-231 (344)
206 COG1875 NYN ribonuclease and A 97.2 0.00093 2E-08 61.9 6.8 133 157-294 227-390 (436)
207 PF14532 Sigma54_activ_2: Sigm 97.2 0.00058 1.3E-08 55.8 4.9 43 157-199 1-45 (138)
208 CHL00095 clpC Clp protease ATP 97.2 0.0021 4.5E-08 68.3 10.2 46 154-199 509-563 (821)
209 PF03215 Rad17: Rad17 cell cyc 97.2 0.0027 5.9E-08 63.3 10.3 54 155-213 20-78 (519)
210 COG1484 DnaC DNA replication p 97.1 0.0025 5.5E-08 57.7 9.0 75 174-264 104-178 (254)
211 TIGR02239 recomb_RAD51 DNA rep 97.1 0.0037 8E-08 58.6 10.1 89 174-263 95-201 (316)
212 KOG1969 DNA replication checkp 97.1 0.0013 2.8E-08 66.1 7.2 72 174-264 325-398 (877)
213 PRK04296 thymidine kinase; Pro 97.1 0.00071 1.5E-08 58.6 4.8 109 176-293 3-117 (190)
214 PRK08699 DNA polymerase III su 97.1 0.0089 1.9E-07 56.2 12.5 25 175-199 21-45 (325)
215 PRK00409 recombination and DNA 97.1 0.0055 1.2E-07 64.4 12.2 181 174-377 326-528 (782)
216 COG0464 SpoVK ATPases of the A 97.1 0.0038 8.1E-08 62.6 10.5 131 174-324 275-425 (494)
217 PRK15455 PrkA family serine pr 97.1 0.00067 1.4E-08 67.2 4.8 45 155-199 77-127 (644)
218 PRK08233 hypothetical protein; 97.1 0.0025 5.5E-08 54.5 8.0 25 175-199 3-27 (182)
219 PRK06696 uridine kinase; Valid 97.1 0.00091 2E-08 59.5 5.3 42 158-199 2-46 (223)
220 cd03115 SRP The signal recogni 97.1 0.003 6.6E-08 53.7 8.3 85 177-264 2-93 (173)
221 PF01695 IstB_IS21: IstB-like 97.0 0.00072 1.6E-08 57.8 4.3 74 174-264 46-119 (178)
222 KOG0734 AAA+-type ATPase conta 97.0 0.0016 3.4E-08 63.2 6.9 45 155-199 305-361 (752)
223 PRK00771 signal recognition pa 97.0 0.006 1.3E-07 59.5 11.0 58 174-234 94-152 (437)
224 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.0055 1.2E-07 51.0 9.2 113 176-293 3-139 (159)
225 PRK04301 radA DNA repair and r 97.0 0.0075 1.6E-07 56.7 11.0 88 174-263 101-208 (317)
226 COG0541 Ffh Signal recognition 97.0 0.11 2.4E-06 49.7 18.6 58 174-234 99-157 (451)
227 cd03238 ABC_UvrA The excision 97.0 0.0029 6.2E-08 54.0 7.4 120 174-306 20-161 (176)
228 PRK11889 flhF flagellar biosyn 97.0 0.0045 9.8E-08 58.9 9.3 87 174-263 240-330 (436)
229 COG1102 Cmk Cytidylate kinase 97.0 0.0026 5.7E-08 52.2 6.6 44 177-234 2-45 (179)
230 TIGR03499 FlhF flagellar biosy 97.0 0.0045 9.8E-08 57.1 9.1 86 174-262 193-281 (282)
231 TIGR02974 phageshock_pspF psp 97.0 0.03 6.4E-07 52.9 14.7 44 156-199 1-46 (329)
232 TIGR02858 spore_III_AA stage I 96.9 0.0063 1.4E-07 55.5 9.7 122 162-295 97-232 (270)
233 cd03247 ABCC_cytochrome_bd The 96.9 0.0045 9.8E-08 52.9 8.4 26 174-199 27-52 (178)
234 COG1618 Predicted nucleotide k 96.9 0.0011 2.4E-08 54.4 4.1 24 176-199 6-29 (179)
235 PLN03186 DNA repair protein RA 96.9 0.0097 2.1E-07 56.2 11.1 89 174-263 122-228 (342)
236 TIGR02236 recomb_radA DNA repa 96.9 0.0065 1.4E-07 57.0 10.0 57 174-231 94-153 (310)
237 TIGR00959 ffh signal recogniti 96.9 0.0051 1.1E-07 59.8 9.3 26 174-199 98-123 (428)
238 COG4608 AppF ABC-type oligopep 96.9 0.0053 1.1E-07 55.1 8.6 122 174-300 38-178 (268)
239 PF00485 PRK: Phosphoribulokin 96.9 0.0093 2E-07 51.8 10.1 79 177-257 1-87 (194)
240 PRK10867 signal recognition pa 96.9 0.0055 1.2E-07 59.6 9.4 26 174-199 99-124 (433)
241 TIGR01817 nifA Nif-specific re 96.9 0.032 6.9E-07 56.5 15.3 47 153-199 195-243 (534)
242 PTZ00035 Rad51 protein; Provis 96.9 0.016 3.5E-07 54.8 12.3 89 174-263 117-223 (337)
243 cd03214 ABC_Iron-Siderophores_ 96.9 0.0042 9E-08 53.2 7.7 117 174-295 24-161 (180)
244 PRK06547 hypothetical protein; 96.9 0.0018 3.9E-08 55.0 5.2 34 166-199 6-39 (172)
245 COG0542 clpA ATP-binding subun 96.8 0.0038 8.2E-08 64.3 8.0 151 155-321 171-345 (786)
246 PRK09270 nucleoside triphospha 96.8 0.0088 1.9E-07 53.4 9.6 27 173-199 31-57 (229)
247 COG0563 Adk Adenylate kinase a 96.8 0.0031 6.7E-08 53.8 6.1 23 177-199 2-24 (178)
248 PF13238 AAA_18: AAA domain; P 96.8 0.0011 2.3E-08 53.1 3.2 22 178-199 1-22 (129)
249 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.013 2.9E-07 52.5 10.6 85 174-264 20-137 (237)
250 KOG0739 AAA+-type ATPase [Post 96.8 0.031 6.7E-07 50.7 12.5 91 154-264 133-236 (439)
251 cd03216 ABC_Carb_Monos_I This 96.8 0.0029 6.4E-08 53.3 5.9 115 174-295 25-145 (163)
252 PRK14974 cell division protein 96.8 0.012 2.7E-07 55.3 10.5 86 174-263 139-232 (336)
253 PF00006 ATP-synt_ab: ATP synt 96.8 0.007 1.5E-07 53.2 8.2 93 166-263 5-115 (215)
254 cd01121 Sms Sms (bacterial rad 96.8 0.013 2.8E-07 56.2 10.7 81 174-263 81-168 (372)
255 PF06309 Torsin: Torsin; Inte 96.8 0.0075 1.6E-07 47.8 7.5 45 155-199 26-77 (127)
256 PF12775 AAA_7: P-loop contain 96.8 0.0028 6.1E-08 58.0 5.9 87 164-263 23-110 (272)
257 PRK09519 recA DNA recombinatio 96.7 0.0052 1.1E-07 63.7 8.4 82 174-263 59-148 (790)
258 PRK14722 flhF flagellar biosyn 96.7 0.0072 1.6E-07 57.5 8.8 86 175-263 137-225 (374)
259 COG0468 RecA RecA/RadA recombi 96.7 0.0092 2E-07 54.4 9.0 88 174-264 59-152 (279)
260 PF00154 RecA: recA bacterial 96.7 0.0095 2.1E-07 55.5 9.2 83 174-264 52-142 (322)
261 KOG0726 26S proteasome regulat 96.7 0.012 2.6E-07 53.1 9.3 199 155-373 186-425 (440)
262 cd03228 ABCC_MRP_Like The MRP 96.7 0.0086 1.9E-07 50.8 8.3 26 174-199 27-52 (171)
263 COG1136 SalX ABC-type antimicr 96.7 0.0083 1.8E-07 52.8 8.2 62 241-306 148-215 (226)
264 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0012 2.7E-08 56.6 3.0 23 177-199 1-23 (183)
265 KOG0727 26S proteasome regulat 96.7 0.054 1.2E-06 47.9 13.0 27 173-199 187-213 (408)
266 COG1121 ZnuC ABC-type Mn/Zn tr 96.7 0.0077 1.7E-07 53.9 8.0 119 175-296 30-203 (254)
267 PRK13531 regulatory ATPase Rav 96.7 0.0026 5.7E-08 62.1 5.4 44 154-199 20-63 (498)
268 PRK07667 uridine kinase; Provi 96.7 0.0028 6.1E-08 55.0 5.1 37 163-199 3-41 (193)
269 PF07728 AAA_5: AAA domain (dy 96.7 0.0046 1E-07 50.4 6.2 43 178-226 2-44 (139)
270 TIGR00708 cobA cob(I)alamin ad 96.7 0.0083 1.8E-07 50.6 7.7 114 175-294 5-142 (173)
271 PRK06067 flagellar accessory p 96.7 0.017 3.8E-07 51.7 10.4 84 174-263 24-130 (234)
272 PF13671 AAA_33: AAA domain; P 96.7 0.0016 3.6E-08 53.3 3.4 23 177-199 1-23 (143)
273 COG1066 Sms Predicted ATP-depe 96.7 0.019 4.2E-07 54.3 10.7 90 164-263 80-178 (456)
274 TIGR00390 hslU ATP-dependent p 96.7 0.0045 9.8E-08 59.3 6.7 46 154-199 12-71 (441)
275 TIGR01425 SRP54_euk signal rec 96.7 0.0096 2.1E-07 57.7 9.0 26 174-199 99-124 (429)
276 PRK06002 fliI flagellum-specif 96.7 0.012 2.6E-07 57.2 9.7 86 174-263 164-264 (450)
277 cd01135 V_A-ATPase_B V/A-type 96.7 0.01 2.3E-07 53.8 8.7 91 174-264 68-177 (276)
278 COG0465 HflB ATP-dependent Zn 96.6 0.026 5.7E-07 56.6 12.2 174 154-350 150-357 (596)
279 PTZ00088 adenylate kinase 1; P 96.6 0.0019 4.1E-08 57.5 3.8 22 178-199 9-30 (229)
280 TIGR00064 ftsY signal recognit 96.6 0.014 3.1E-07 53.4 9.6 86 174-263 71-164 (272)
281 cd02019 NK Nucleoside/nucleoti 96.6 0.0018 3.9E-08 45.9 3.0 23 177-199 1-23 (69)
282 cd02025 PanK Pantothenate kina 96.6 0.012 2.5E-07 52.3 8.8 74 177-251 1-76 (220)
283 KOG0652 26S proteasome regulat 96.6 0.049 1.1E-06 48.4 12.3 191 147-360 162-393 (424)
284 TIGR00554 panK_bact pantothena 96.6 0.012 2.5E-07 54.3 8.8 79 174-253 61-141 (290)
285 TIGR01420 pilT_fam pilus retra 96.6 0.0045 9.7E-08 58.9 6.4 113 173-295 120-233 (343)
286 cd03223 ABCD_peroxisomal_ALDP 96.6 0.0068 1.5E-07 51.2 6.8 116 174-295 26-151 (166)
287 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.011 2.3E-07 48.7 7.8 103 174-296 25-131 (144)
288 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0092 2E-07 50.9 7.6 103 174-296 24-136 (177)
289 COG2607 Predicted ATPase (AAA+ 96.6 0.016 3.4E-07 51.0 8.9 46 154-199 60-109 (287)
290 PF13481 AAA_25: AAA domain; P 96.6 0.0059 1.3E-07 52.8 6.5 42 176-217 33-81 (193)
291 cd01124 KaiC KaiC is a circadi 96.6 0.014 3E-07 50.2 8.7 45 177-226 1-45 (187)
292 cd03230 ABC_DR_subfamily_A Thi 96.6 0.0074 1.6E-07 51.3 7.0 26 174-199 25-50 (173)
293 COG0572 Udk Uridine kinase [Nu 96.6 0.0074 1.6E-07 52.6 6.9 26 174-199 7-32 (218)
294 PRK05480 uridine/cytidine kina 96.6 0.0022 4.7E-08 56.4 3.7 27 173-199 4-30 (209)
295 KOG0738 AAA+-type ATPase [Post 96.6 0.029 6.3E-07 52.7 11.0 26 174-199 244-269 (491)
296 PF06745 KaiC: KaiC; InterPro 96.6 0.0079 1.7E-07 53.5 7.4 83 174-262 18-124 (226)
297 TIGR03878 thermo_KaiC_2 KaiC d 96.6 0.016 3.5E-07 52.7 9.5 40 174-216 35-74 (259)
298 PRK12723 flagellar biosynthesi 96.6 0.018 3.8E-07 55.4 10.0 88 174-263 173-264 (388)
299 PRK14527 adenylate kinase; Pro 96.6 0.0031 6.8E-08 54.6 4.6 26 174-199 5-30 (191)
300 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0024 5.2E-08 54.9 3.6 26 174-199 2-27 (188)
301 PRK12597 F0F1 ATP synthase sub 96.5 0.01 2.3E-07 58.0 8.3 88 174-263 142-247 (461)
302 PRK05342 clpX ATP-dependent pr 96.5 0.0065 1.4E-07 58.9 6.8 46 154-199 71-132 (412)
303 PRK05439 pantothenate kinase; 96.5 0.018 4E-07 53.5 9.5 81 173-254 84-166 (311)
304 PF00158 Sigma54_activat: Sigm 96.5 0.015 3.3E-07 49.1 8.3 44 156-199 1-46 (168)
305 PTZ00301 uridine kinase; Provi 96.5 0.0027 5.8E-08 55.7 3.7 25 175-199 3-27 (210)
306 PRK08972 fliI flagellum-specif 96.5 0.013 2.9E-07 56.7 8.6 85 174-263 161-262 (444)
307 PRK04328 hypothetical protein; 96.5 0.029 6.3E-07 50.8 10.5 41 174-217 22-62 (249)
308 PRK09280 F0F1 ATP synthase sub 96.5 0.02 4.4E-07 55.9 9.9 88 174-263 143-248 (463)
309 cd03246 ABCC_Protease_Secretio 96.5 0.0065 1.4E-07 51.7 5.9 26 174-199 27-52 (173)
310 cd03281 ABC_MSH5_euk MutS5 hom 96.5 0.003 6.5E-08 55.7 3.9 23 175-197 29-51 (213)
311 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.0056 1.2E-07 51.1 5.4 116 174-297 24-145 (157)
312 PRK13765 ATP-dependent proteas 96.4 0.0061 1.3E-07 62.2 6.5 75 154-233 31-105 (637)
313 PF01583 APS_kinase: Adenylyls 96.4 0.0037 8.1E-08 51.8 4.1 36 175-213 2-37 (156)
314 PRK10463 hydrogenase nickel in 96.4 0.059 1.3E-06 49.4 12.2 32 168-199 97-128 (290)
315 TIGR03881 KaiC_arch_4 KaiC dom 96.4 0.044 9.6E-07 48.8 11.4 41 174-217 19-59 (229)
316 PRK12726 flagellar biosynthesi 96.4 0.026 5.6E-07 53.6 10.0 87 174-263 205-295 (407)
317 PRK05201 hslU ATP-dependent pr 96.4 0.0085 1.9E-07 57.5 6.9 46 154-199 15-74 (443)
318 PRK15429 formate hydrogenlyase 96.4 0.014 3E-07 61.0 9.1 45 155-199 377-423 (686)
319 PF08433 KTI12: Chromatin asso 96.4 0.0071 1.5E-07 55.2 6.1 24 176-199 2-25 (270)
320 PRK03839 putative kinase; Prov 96.4 0.0029 6.2E-08 54.2 3.4 23 177-199 2-24 (180)
321 TIGR00235 udk uridine kinase. 96.4 0.0032 6.9E-08 55.3 3.6 26 174-199 5-30 (207)
322 TIGR03305 alt_F1F0_F1_bet alte 96.4 0.0098 2.1E-07 57.9 7.2 88 174-263 137-242 (449)
323 PF07726 AAA_3: ATPase family 96.4 0.0035 7.6E-08 49.8 3.4 27 178-207 2-28 (131)
324 PF00625 Guanylate_kin: Guanyl 96.4 0.0056 1.2E-07 52.6 5.0 36 175-213 2-37 (183)
325 cd01129 PulE-GspE PulE/GspE Th 96.4 0.0068 1.5E-07 55.3 5.7 126 157-295 62-187 (264)
326 PF00910 RNA_helicase: RNA hel 96.4 0.0026 5.7E-08 49.4 2.6 22 178-199 1-22 (107)
327 PRK11823 DNA repair protein Ra 96.4 0.035 7.6E-07 54.6 11.1 81 174-263 79-166 (446)
328 KOG1051 Chaperone HSP104 and r 96.3 0.022 4.8E-07 59.6 9.9 100 155-264 563-671 (898)
329 COG4618 ArpD ABC-type protease 96.3 0.015 3.2E-07 56.5 7.9 26 174-199 361-386 (580)
330 TIGR01650 PD_CobS cobaltochela 96.3 0.13 2.9E-06 48.0 14.0 57 160-224 51-107 (327)
331 PF10236 DAP3: Mitochondrial r 96.3 0.13 2.8E-06 48.1 14.2 49 303-351 258-306 (309)
332 PF03029 ATP_bind_1: Conserved 96.3 0.0042 9.1E-08 55.7 4.1 32 180-214 1-32 (238)
333 PRK00279 adk adenylate kinase; 96.3 0.023 4.9E-07 50.2 8.7 23 177-199 2-24 (215)
334 PRK08927 fliI flagellum-specif 96.3 0.022 4.8E-07 55.3 9.2 85 174-263 157-258 (442)
335 KOG0735 AAA+-type ATPase [Post 96.3 0.19 4E-06 51.1 15.6 152 176-350 702-872 (952)
336 PRK12724 flagellar biosynthesi 96.3 0.015 3.2E-07 56.1 7.8 25 175-199 223-247 (432)
337 TIGR00416 sms DNA repair prote 96.3 0.041 9E-07 54.2 11.2 81 174-263 93-180 (454)
338 TIGR02655 circ_KaiC circadian 96.3 0.033 7.2E-07 55.6 10.6 94 164-263 250-363 (484)
339 PRK06217 hypothetical protein; 96.3 0.0078 1.7E-07 51.7 5.4 23 177-199 3-25 (183)
340 COG4088 Predicted nucleotide k 96.3 0.018 4E-07 49.4 7.3 24 176-199 2-25 (261)
341 PRK04040 adenylate kinase; Pro 96.3 0.0041 8.8E-08 53.7 3.6 25 175-199 2-26 (188)
342 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0088 1.9E-07 48.2 5.2 39 161-199 6-46 (133)
343 PRK00131 aroK shikimate kinase 96.3 0.0043 9.4E-08 52.6 3.7 26 174-199 3-28 (175)
344 smart00534 MUTSac ATPase domai 96.3 0.0011 2.3E-08 57.2 -0.1 21 177-197 1-21 (185)
345 PRK05973 replicative DNA helic 96.3 0.038 8.2E-07 49.3 9.7 49 174-227 63-111 (237)
346 TIGR00764 lon_rel lon-related 96.2 0.016 3.4E-07 59.3 8.2 75 154-233 18-92 (608)
347 COG0396 sufC Cysteine desulfur 96.2 0.051 1.1E-06 47.6 10.0 63 242-304 151-216 (251)
348 KOG3347 Predicted nucleotide k 96.2 0.0078 1.7E-07 48.7 4.7 71 175-254 7-77 (176)
349 cd01132 F1_ATPase_alpha F1 ATP 96.2 0.016 3.4E-07 52.7 7.2 93 174-271 68-180 (274)
350 TIGR03498 FliI_clade3 flagella 96.2 0.024 5.1E-07 55.0 8.9 86 174-263 139-240 (418)
351 PRK05703 flhF flagellar biosyn 96.2 0.02 4.3E-07 55.9 8.5 85 175-262 221-308 (424)
352 PF05970 PIF1: PIF1-like helic 96.2 0.012 2.5E-07 56.6 6.7 38 162-199 9-46 (364)
353 PRK13543 cytochrome c biogenes 96.2 0.026 5.7E-07 49.7 8.6 26 174-199 36-61 (214)
354 PRK05922 type III secretion sy 96.2 0.02 4.4E-07 55.5 8.3 85 174-263 156-257 (434)
355 PF13245 AAA_19: Part of AAA d 96.2 0.015 3.2E-07 42.0 5.7 26 174-199 9-34 (76)
356 PRK08149 ATP synthase SpaL; Va 96.2 0.023 5E-07 55.1 8.7 85 174-263 150-251 (428)
357 PRK00625 shikimate kinase; Pro 96.2 0.0041 8.9E-08 52.8 3.2 23 177-199 2-24 (173)
358 CHL00081 chlI Mg-protoporyphyr 96.2 0.0061 1.3E-07 57.6 4.5 46 154-199 17-62 (350)
359 PF03308 ArgK: ArgK protein; 96.2 0.011 2.3E-07 52.8 5.8 62 162-224 14-77 (266)
360 PRK14721 flhF flagellar biosyn 96.2 0.042 9.2E-07 53.2 10.3 25 175-199 191-215 (420)
361 cd02023 UMPK Uridine monophosp 96.2 0.0038 8.2E-08 54.4 2.9 23 177-199 1-23 (198)
362 COG1120 FepC ABC-type cobalami 96.2 0.028 6E-07 50.6 8.4 122 174-298 27-205 (258)
363 TIGR01039 atpD ATP synthase, F 96.2 0.022 4.7E-07 55.5 8.2 88 174-263 142-247 (461)
364 KOG0729 26S proteasome regulat 96.2 0.018 4E-07 51.2 7.0 43 157-199 180-235 (435)
365 TIGR00382 clpX endopeptidase C 96.2 0.017 3.8E-07 55.8 7.6 47 153-199 76-140 (413)
366 cd03213 ABCG_EPDR ABCG transpo 96.1 0.021 4.6E-07 49.5 7.5 26 174-199 34-59 (194)
367 COG1703 ArgK Putative periplas 96.1 0.01 2.2E-07 53.8 5.5 62 164-226 38-101 (323)
368 PRK08533 flagellar accessory p 96.1 0.057 1.2E-06 48.2 10.4 49 174-227 23-71 (230)
369 PF03205 MobB: Molybdopterin g 96.1 0.0081 1.8E-07 49.1 4.5 39 176-216 1-39 (140)
370 TIGR02322 phosphon_PhnN phosph 96.1 0.0048 1E-07 52.7 3.4 24 176-199 2-25 (179)
371 COG0714 MoxR-like ATPases [Gen 96.1 0.016 3.5E-07 54.8 7.2 65 155-227 25-89 (329)
372 cd00227 CPT Chloramphenicol (C 96.1 0.0055 1.2E-07 52.3 3.6 24 176-199 3-26 (175)
373 PRK05986 cob(I)alamin adenolsy 96.1 0.029 6.2E-07 48.1 7.9 117 174-294 21-160 (191)
374 cd01136 ATPase_flagellum-secre 96.1 0.039 8.4E-07 51.7 9.4 85 174-263 68-169 (326)
375 cd01130 VirB11-like_ATPase Typ 96.1 0.0067 1.4E-07 52.3 4.1 120 162-294 13-137 (186)
376 cd02021 GntK Gluconate kinase 96.1 0.0045 9.8E-08 51.2 2.9 23 177-199 1-23 (150)
377 cd03217 ABC_FeS_Assembly ABC-t 96.1 0.02 4.3E-07 50.0 7.0 25 174-198 25-49 (200)
378 PF03193 DUF258: Protein of un 96.1 0.01 2.2E-07 49.4 4.8 37 160-199 23-59 (161)
379 COG1428 Deoxynucleoside kinase 96.1 0.013 2.8E-07 50.5 5.5 49 175-229 4-52 (216)
380 COG1131 CcmA ABC-type multidru 96.0 0.071 1.5E-06 49.5 10.7 26 174-199 30-55 (293)
381 cd02020 CMPK Cytidine monophos 96.0 0.0053 1.1E-07 50.4 3.0 23 177-199 1-23 (147)
382 cd00071 GMPK Guanosine monopho 96.0 0.0061 1.3E-07 49.7 3.2 23 177-199 1-23 (137)
383 PF13086 AAA_11: AAA domain; P 96.0 0.014 3.1E-07 51.7 6.0 53 177-229 19-75 (236)
384 PRK12678 transcription termina 96.0 0.018 3.9E-07 57.2 6.9 97 165-263 405-513 (672)
385 TIGR02030 BchI-ChlI magnesium 96.0 0.01 2.2E-07 56.0 5.1 45 155-199 5-49 (337)
386 COG3854 SpoIIIAA ncharacterize 96.0 0.022 4.7E-07 49.8 6.5 119 166-297 128-258 (308)
387 PF03266 NTPase_1: NTPase; In 96.0 0.0059 1.3E-07 51.6 3.1 22 178-199 2-23 (168)
388 PRK06851 hypothetical protein; 96.0 0.21 4.6E-06 47.6 13.8 44 172-217 211-254 (367)
389 cd02024 NRK1 Nicotinamide ribo 96.0 0.0055 1.2E-07 52.7 2.9 23 177-199 1-23 (187)
390 TIGR03575 selen_PSTK_euk L-ser 96.0 0.071 1.5E-06 50.3 10.5 22 178-199 2-23 (340)
391 TIGR03263 guanyl_kin guanylate 95.9 0.0061 1.3E-07 52.1 3.2 24 176-199 2-25 (180)
392 KOG0651 26S proteasome regulat 95.9 0.014 2.9E-07 53.2 5.3 26 174-199 165-190 (388)
393 COG0467 RAD55 RecA-superfamily 95.9 0.019 4.1E-07 52.3 6.5 84 174-263 22-134 (260)
394 PF08298 AAA_PrkA: PrkA AAA do 95.9 0.012 2.7E-07 54.9 5.2 46 154-199 61-112 (358)
395 KOG0737 AAA+-type ATPase [Post 95.9 0.32 7E-06 45.6 14.3 50 155-207 93-156 (386)
396 PRK00889 adenylylsulfate kinas 95.9 0.0085 1.8E-07 51.0 3.9 26 174-199 3-28 (175)
397 cd02028 UMPK_like Uridine mono 95.9 0.009 1.9E-07 51.2 4.0 23 177-199 1-23 (179)
398 COG1124 DppF ABC-type dipeptid 95.9 0.01 2.3E-07 52.2 4.4 26 174-199 32-57 (252)
399 COG2274 SunT ABC-type bacterio 95.9 0.033 7.1E-07 57.8 8.7 26 174-199 498-523 (709)
400 COG0488 Uup ATPase components 95.9 0.15 3.3E-06 51.1 13.1 263 8-308 210-511 (530)
401 PRK10751 molybdopterin-guanine 95.9 0.0081 1.8E-07 50.8 3.6 26 174-199 5-30 (173)
402 KOG2170 ATPase of the AAA+ sup 95.9 0.029 6.3E-07 50.9 7.2 45 155-199 83-134 (344)
403 PRK14530 adenylate kinase; Pro 95.9 0.0073 1.6E-07 53.3 3.4 24 176-199 4-27 (215)
404 PRK10416 signal recognition pa 95.9 0.066 1.4E-06 50.2 9.9 26 174-199 113-138 (318)
405 TIGR03496 FliI_clade1 flagella 95.9 0.032 6.9E-07 54.1 7.9 85 174-263 136-237 (411)
406 PRK07132 DNA polymerase III su 95.9 0.51 1.1E-05 43.8 15.6 144 163-321 5-161 (299)
407 PRK09099 type III secretion sy 95.9 0.039 8.4E-07 53.8 8.5 86 174-263 162-263 (441)
408 PRK13947 shikimate kinase; Pro 95.9 0.0078 1.7E-07 51.0 3.4 23 177-199 3-25 (171)
409 cd04159 Arl10_like Arl10-like 95.8 0.029 6.3E-07 46.1 6.8 22 178-199 2-23 (159)
410 PRK07594 type III secretion sy 95.8 0.042 9.1E-07 53.4 8.6 85 174-263 154-255 (433)
411 PF08477 Miro: Miro-like prote 95.8 0.008 1.7E-07 47.3 3.2 22 178-199 2-23 (119)
412 PRK10875 recD exonuclease V su 95.8 0.017 3.7E-07 58.9 6.2 57 174-230 166-222 (615)
413 PRK06995 flhF flagellar biosyn 95.8 0.042 9.1E-07 54.2 8.6 58 175-233 256-314 (484)
414 PRK00300 gmk guanylate kinase; 95.8 0.0085 1.8E-07 52.4 3.6 26 174-199 4-29 (205)
415 PRK13949 shikimate kinase; Pro 95.8 0.0077 1.7E-07 51.0 3.1 23 177-199 3-25 (169)
416 PRK13407 bchI magnesium chelat 95.8 0.012 2.6E-07 55.4 4.6 46 154-199 8-53 (334)
417 TIGR03522 GldA_ABC_ATP gliding 95.8 0.052 1.1E-06 50.6 9.0 26 174-199 27-52 (301)
418 PRK05688 fliI flagellum-specif 95.8 0.047 1E-06 53.3 8.7 85 174-263 167-268 (451)
419 PRK06936 type III secretion sy 95.8 0.049 1.1E-06 52.9 8.8 85 174-263 161-262 (439)
420 TIGR01313 therm_gnt_kin carboh 95.8 0.0067 1.4E-07 51.0 2.6 22 178-199 1-22 (163)
421 TIGR01041 ATP_syn_B_arch ATP s 95.8 0.054 1.2E-06 53.1 9.2 89 174-263 140-248 (458)
422 PRK14737 gmk guanylate kinase; 95.8 0.0096 2.1E-07 51.3 3.6 26 174-199 3-28 (186)
423 cd03282 ABC_MSH4_euk MutS4 hom 95.8 0.0086 1.9E-07 52.4 3.3 25 174-198 28-52 (204)
424 cd03243 ABC_MutS_homologs The 95.8 0.0051 1.1E-07 53.8 1.9 22 176-197 30-51 (202)
425 PF12061 DUF3542: Protein of u 95.8 0.017 3.7E-07 52.4 5.2 75 11-92 298-372 (402)
426 TIGR02524 dot_icm_DotB Dot/Icm 95.8 0.021 4.6E-07 54.4 6.2 122 166-294 126-249 (358)
427 PRK13537 nodulation ABC transp 95.8 0.045 9.8E-07 51.2 8.3 26 174-199 32-57 (306)
428 PRK05800 cobU adenosylcobinami 95.8 0.043 9.3E-07 46.5 7.4 79 176-262 2-85 (170)
429 cd01672 TMPK Thymidine monopho 95.7 0.023 5.1E-07 49.1 6.1 23 177-199 2-24 (200)
430 COG1936 Predicted nucleotide k 95.7 0.008 1.7E-07 50.1 2.8 20 177-196 2-21 (180)
431 PRK10078 ribose 1,5-bisphospho 95.7 0.0083 1.8E-07 51.7 3.2 24 176-199 3-26 (186)
432 TIGR00073 hypB hydrogenase acc 95.7 0.012 2.6E-07 51.7 4.2 30 170-199 17-46 (207)
433 PTZ00185 ATPase alpha subunit; 95.7 0.061 1.3E-06 52.9 9.3 90 174-264 188-300 (574)
434 PRK07721 fliI flagellum-specif 95.7 0.046 1E-06 53.4 8.5 87 173-263 156-258 (438)
435 cd00464 SK Shikimate kinase (S 95.7 0.0088 1.9E-07 49.5 3.2 22 178-199 2-23 (154)
436 cd00544 CobU Adenosylcobinamid 95.7 0.039 8.5E-07 46.7 7.1 79 177-262 1-82 (169)
437 COG1116 TauB ABC-type nitrate/ 95.7 0.0088 1.9E-07 53.0 3.2 26 174-199 28-53 (248)
438 PRK12339 2-phosphoglycerate ki 95.7 0.011 2.3E-07 51.5 3.7 25 175-199 3-27 (197)
439 TIGR01351 adk adenylate kinase 95.7 0.0099 2.1E-07 52.3 3.5 22 178-199 2-23 (210)
440 cd01122 GP4d_helicase GP4d_hel 95.7 0.085 1.8E-06 48.3 9.9 52 175-230 30-81 (271)
441 PRK13975 thymidylate kinase; P 95.7 0.01 2.2E-07 51.5 3.5 24 176-199 3-26 (196)
442 PRK07196 fliI flagellum-specif 95.7 0.041 8.8E-07 53.5 7.8 85 174-263 154-255 (434)
443 PRK14723 flhF flagellar biosyn 95.7 0.062 1.3E-06 55.8 9.5 25 175-199 185-209 (767)
444 PRK06793 fliI flagellum-specif 95.7 0.059 1.3E-06 52.4 8.9 87 174-264 155-257 (432)
445 COG0194 Gmk Guanylate kinase [ 95.7 0.011 2.4E-07 50.0 3.4 25 175-199 4-28 (191)
446 COG0529 CysC Adenylylsulfate k 95.7 0.016 3.4E-07 48.5 4.2 29 171-199 19-47 (197)
447 COG1419 FlhF Flagellar GTP-bin 95.6 0.12 2.5E-06 49.4 10.5 87 174-263 202-291 (407)
448 cd00820 PEPCK_HprK Phosphoenol 95.6 0.011 2.4E-07 45.6 3.1 22 175-196 15-36 (107)
449 TIGR00041 DTMP_kinase thymidyl 95.6 0.029 6.4E-07 48.5 6.2 24 176-199 4-27 (195)
450 PRK05057 aroK shikimate kinase 95.6 0.012 2.6E-07 50.0 3.5 25 175-199 4-28 (172)
451 cd01134 V_A-ATPase_A V/A-type 95.6 0.099 2.1E-06 49.1 9.7 50 174-228 156-206 (369)
452 PLN02924 thymidylate kinase 95.6 0.057 1.2E-06 47.8 7.9 53 175-229 16-68 (220)
453 TIGR01026 fliI_yscN ATPase Fli 95.6 0.088 1.9E-06 51.5 9.8 85 174-263 162-263 (440)
454 cd02027 APSK Adenosine 5'-phos 95.6 0.01 2.2E-07 49.2 3.0 23 177-199 1-23 (149)
455 PRK15453 phosphoribulokinase; 95.6 0.083 1.8E-06 48.2 8.9 26 174-199 4-29 (290)
456 KOG1532 GTPase XAB1, interacts 95.6 0.015 3.2E-07 52.0 4.0 26 174-199 18-43 (366)
457 PRK09435 membrane ATPase/prote 95.6 0.099 2.2E-06 49.2 9.8 36 164-199 43-80 (332)
458 cd03285 ABC_MSH2_euk MutS2 hom 95.6 0.0053 1.2E-07 54.5 1.3 172 174-360 29-219 (222)
459 CHL00060 atpB ATP synthase CF1 95.6 0.056 1.2E-06 53.1 8.4 88 174-263 160-272 (494)
460 CHL00206 ycf2 Ycf2; Provisiona 95.6 0.15 3.3E-06 57.5 12.3 26 174-199 1629-1654(2281)
461 PRK03846 adenylylsulfate kinas 95.6 0.013 2.9E-07 50.9 3.8 27 173-199 22-48 (198)
462 TIGR02546 III_secr_ATP type II 95.6 0.11 2.4E-06 50.6 10.5 86 173-263 143-245 (422)
463 PF10923 DUF2791: P-loop Domai 95.6 0.1 2.2E-06 50.4 10.0 77 155-234 26-112 (416)
464 COG1126 GlnQ ABC-type polar am 95.6 0.011 2.4E-07 51.2 3.0 26 174-199 27-52 (240)
465 PTZ00494 tuzin-like protein; P 95.6 0.12 2.7E-06 49.8 10.2 159 153-322 370-544 (664)
466 PRK14738 gmk guanylate kinase; 95.5 0.012 2.7E-07 51.5 3.5 25 174-198 12-36 (206)
467 PRK14526 adenylate kinase; Pro 95.5 0.017 3.6E-07 50.8 4.2 22 178-199 3-24 (211)
468 TIGR02868 CydC thiol reductant 95.5 0.055 1.2E-06 54.8 8.6 26 174-199 360-385 (529)
469 COG4240 Predicted kinase [Gene 95.5 0.075 1.6E-06 46.4 7.9 81 173-255 48-135 (300)
470 COG0125 Tmk Thymidylate kinase 95.5 0.06 1.3E-06 47.1 7.6 51 176-229 4-54 (208)
471 PRK13545 tagH teichoic acids e 95.5 0.076 1.6E-06 52.9 9.1 26 174-199 49-74 (549)
472 PLN02200 adenylate kinase fami 95.5 0.014 3E-07 52.3 3.7 26 174-199 42-67 (234)
473 TIGR01040 V-ATPase_V1_B V-type 95.5 0.071 1.5E-06 51.9 8.7 90 174-263 140-257 (466)
474 PRK06761 hypothetical protein; 95.5 0.028 6.1E-07 51.5 5.7 24 176-199 4-27 (282)
475 PRK13948 shikimate kinase; Pro 95.5 0.015 3.3E-07 49.8 3.8 26 174-199 9-34 (182)
476 COG4133 CcmA ABC-type transpor 95.5 0.071 1.5E-06 45.2 7.5 25 175-199 28-52 (209)
477 TIGR02788 VirB11 P-type DNA tr 95.5 0.03 6.4E-07 52.4 6.0 110 174-294 143-255 (308)
478 KOG0927 Predicted transporter 95.5 0.056 1.2E-06 53.0 7.8 35 174-208 100-134 (614)
479 cd02029 PRK_like Phosphoribulo 95.5 0.064 1.4E-06 48.5 7.7 75 177-254 1-85 (277)
480 PRK09302 circadian clock prote 95.4 0.11 2.5E-06 52.2 10.5 84 174-263 272-373 (509)
481 PRK14532 adenylate kinase; Pro 95.4 0.013 2.7E-07 50.6 3.1 22 178-199 3-24 (188)
482 PF13521 AAA_28: AAA domain; P 95.4 0.011 2.5E-07 49.6 2.8 21 178-198 2-22 (163)
483 cd03287 ABC_MSH3_euk MutS3 hom 95.4 0.015 3.2E-07 51.5 3.6 109 174-298 30-160 (222)
484 CHL00059 atpA ATP synthase CF1 95.4 0.051 1.1E-06 53.3 7.4 85 174-263 140-243 (485)
485 PRK06731 flhF flagellar biosyn 95.4 0.12 2.7E-06 47.1 9.4 87 174-263 74-164 (270)
486 smart00072 GuKc Guanylate kina 95.4 0.019 4.2E-07 49.3 4.1 25 175-199 2-26 (184)
487 cd01428 ADK Adenylate kinase ( 95.4 0.014 3E-07 50.5 3.1 22 178-199 2-23 (194)
488 PRK13946 shikimate kinase; Pro 95.3 0.018 3.9E-07 49.5 3.8 25 175-199 10-34 (184)
489 PF13604 AAA_30: AAA domain; P 95.3 0.029 6.4E-07 48.7 5.1 35 165-199 8-42 (196)
490 PRK04182 cytidylate kinase; Pr 95.3 0.016 3.4E-07 49.4 3.4 23 177-199 2-24 (180)
491 PRK08472 fliI flagellum-specif 95.3 0.058 1.3E-06 52.5 7.5 87 173-264 155-257 (434)
492 PF05659 RPW8: Arabidopsis bro 95.3 0.14 3E-06 42.1 8.7 110 6-131 6-115 (147)
493 PRK15064 ABC transporter ATP-b 95.3 0.072 1.6E-06 54.0 8.6 26 174-199 26-51 (530)
494 COG1643 HrpA HrpA-like helicas 95.3 0.074 1.6E-06 55.9 8.7 130 160-294 52-207 (845)
495 TIGR02173 cyt_kin_arch cytidyl 95.3 0.016 3.6E-07 48.8 3.4 23 177-199 2-24 (171)
496 TIGR03497 FliI_clade2 flagella 95.3 0.08 1.7E-06 51.4 8.4 85 174-263 136-237 (413)
497 COG2019 AdkA Archaeal adenylat 95.3 0.018 3.9E-07 47.7 3.3 25 175-199 4-28 (189)
498 TIGR03574 selen_PSTK L-seryl-t 95.3 0.014 2.9E-07 52.9 2.9 23 177-199 1-23 (249)
499 PRK09825 idnK D-gluconate kina 95.3 0.017 3.7E-07 49.3 3.3 24 176-199 4-27 (176)
500 PRK14529 adenylate kinase; Pro 95.3 0.049 1.1E-06 48.2 6.3 83 178-265 3-88 (223)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-55 Score=450.14 Aligned_cols=375 Identities=45% Similarity=0.739 Sum_probs=323.0
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhH
Q 041476 14 LSTGFINCTRRKAAYVSRLEHNLIAIQTQLQKLIEAKNDVMTRVANAEQQQLRRLNKVQGWLSRVEAVEAEVGELTRDSS 93 (397)
Q Consensus 14 ~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~i~~ae~~~~~~~~~~~~Wl~~l~~~~~d~ed~ld~~~ 93 (397)
.++++.+.+.+++..+.+.++.+..|++.|..|+.++.|+ +.++ .....+..|...++++.|+++|+++.|.
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~-------~a~~-~~~~~~~~~~e~~~~~~~~~e~~~~~~~ 79 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDL-------DAKR-DDLERRVNWEEDVGDLVYLAEDIIWLFL 79 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-------Hhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999999999999885 3333 2246678999999999999999999887
Q ss_pred HHHHh----------------hhhCCCCCCCcchhhhhhHHHHHHHHHHHHHHhcCCcccccc-cCCCCCCcCCCCCCcc
Q 041476 94 QEIEK----------------LCLGGYCSKNCKSSYKFGKKVSKKLQLVATLMDEGAFEVVAE-KVPQPAVDEKPLQPTI 156 (397)
Q Consensus 94 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 156 (397)
.+... .|..++|.+.....+.+++++-+..+.++.+..++.|..+.. ..|......+|..+..
T Consensus 80 v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (889)
T KOG4658|consen 80 VEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSES 159 (889)
T ss_pred HHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccc
Confidence 54432 244466667777778889999999999999988776766654 2222223333333323
Q ss_pred -ccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-
Q 041476 157 -VGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL- 234 (397)
Q Consensus 157 -vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~- 234 (397)
||.+..++++.+.|.+++..+++|+||||+||||||++++|+...++.+|+.++||+||+.++...++++|++.++..
T Consensus 160 ~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 160 DVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred cccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 999999999999999988899999999999999999999999944899999999999999999999999999988874
Q ss_pred ---cCCCHHHHHHHHHHHhcCCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhhhh-hccCceeecCCCC
Q 041476 235 ---QNRSFEEKASGIFNLLSKMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVCGL-MEAQKTFKVECLA 310 (397)
Q Consensus 235 ---~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~-~~~~~~~~l~~L~ 310 (397)
......+++..|.+.|++|||||||||||+..+|+.++.+ +|...+||+|++|||+..||.. ++....++++.|+
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~-~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~ 318 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVP-FPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLT 318 (889)
T ss_pred cccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCC-CCCccCCeEEEEEeccHhhhhccccCCccccccccC
Confidence 2333468899999999999999999999999999999999 8888899999999999999988 8888899999999
Q ss_pred hHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcCCCChhHHHHHHHHHhcc-cCCCCCChhHHH
Q 041476 311 DQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSSKKTPEEWSYAIQMLRRS-AYEFPGMEKEVF 389 (397)
Q Consensus 311 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~~l~~~-~~~~~~~~~~~~ 389 (397)
.++||.||++.++.......+.++++|++|+++|+|+|||+.++|++|+.+++..+|+++++.+.+. ..+.+++++.++
T Consensus 319 ~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~ 398 (889)
T KOG4658|consen 319 PEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL 398 (889)
T ss_pred ccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH
Confidence 9999999999999876566667999999999999999999999999999999999999999999998 566677788999
Q ss_pred hhhhcccC
Q 041476 390 RLLKFSYD 397 (397)
Q Consensus 390 ~~L~lsY~ 397 (397)
++|++|||
T Consensus 399 ~iLklSyd 406 (889)
T KOG4658|consen 399 PILKLSYD 406 (889)
T ss_pred HhhhccHh
Confidence 99999997
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.2e-40 Score=305.75 Aligned_cols=237 Identities=35% Similarity=0.590 Sum_probs=195.2
Q ss_pred chhhHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc--
Q 041476 159 LESTFDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-- 234 (397)
Q Consensus 159 r~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-- 234 (397)
|+.++++|.+.|.+ ++.++|+|+|+||+||||||.+++++. ..+.+|+.++|+.++...+...++..|+++++..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999998 689999999999999999999999995 3589999999999999999999999999999876
Q ss_pred ---cCCCHHHHHHHHHHHhcCCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhhhhhcc-CceeecCCCC
Q 041476 235 ---QNRSFEEKASGIFNLLSKMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVCGLMEA-QKTFKVECLA 310 (397)
Q Consensus 235 ---~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~~~~-~~~~~l~~L~ 310 (397)
...+..+....+.+.|+++++||||||||+...|+.+... ++....|++||+|||+..++..+.. ...+++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~-~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREP-LPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH--------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 3457788999999999999999999999999999998877 6777779999999999999876664 6789999999
Q ss_pred hHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcCCCChhHHHHHHHHHhcccCCCCCChhHHHh
Q 041476 311 DQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSSKKTPEEWSYAIQMLRRSAYEFPGMEKEVFR 390 (397)
Q Consensus 311 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 390 (397)
.+++++||++.++......++.+.+.+++|+++|+|+||||.++|++|+.+.+..+|+++++.+.....+..+....++.
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999976552334566778999999999999999999999976667899999999988876555444568999
Q ss_pred hhhcccC
Q 041476 391 LLKFSYD 397 (397)
Q Consensus 391 ~L~lsY~ 397 (397)
++.+||+
T Consensus 239 ~l~~s~~ 245 (287)
T PF00931_consen 239 ALELSYD 245 (287)
T ss_dssp HHHHHHH
T ss_pred cceechh
Confidence 9999995
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.4e-32 Score=293.91 Aligned_cols=231 Identities=21% Similarity=0.304 Sum_probs=184.7
Q ss_pred CccccchhhHHHHHHHHh--cCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe---CCc-----------
Q 041476 154 PTIVGLESTFDKVWRCLV--EGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVV---SKD----------- 217 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~v---s~~----------- 217 (397)
+.+||++..++++..+|. .++.++|+|+||||+||||||+.+|+.. ..+|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 568999999999998874 3578999999999999999999999987 678998888742 111
Q ss_pred CC-HHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhhh
Q 041476 218 MQ-LERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVCG 296 (397)
Q Consensus 218 ~~-~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~ 296 (397)
++ ...+..+++.++......... ....+++.|++||+||||||||+...|+.+... ....++|++||||||+..++.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~-~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~-~~~~~~GsrIIiTTrd~~vl~ 338 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIY-HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQ-TQWFGSGSRIIVITKDKHFLR 338 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccC-CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhh-CccCCCCcEEEEEeCcHHHHH
Confidence 01 123344444443322111111 124577889999999999999999999988765 455578999999999999988
Q ss_pred hhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcCCCChhHHHHHHHHHhc
Q 041476 297 LMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSSKKTPEEWSYAIQMLRR 376 (397)
Q Consensus 297 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~~l~~ 376 (397)
.++..+.|+++.|++++||+||+++||... ..+..+.+++++|+++|+|+|||++++|+.|++ ++..+|+.+++.|+.
T Consensus 339 ~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~ 416 (1153)
T PLN03210 339 AHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRN 416 (1153)
T ss_pred hcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHh
Confidence 777788999999999999999999999765 334568899999999999999999999999998 588999999999876
Q ss_pred ccCCCCCChhHHHhhhhcccC
Q 041476 377 SAYEFPGMEKEVFRLLKFSYD 397 (397)
Q Consensus 377 ~~~~~~~~~~~~~~~L~lsY~ 397 (397)
.. +.++..+|++|||
T Consensus 417 ~~------~~~I~~~L~~SYd 431 (1153)
T PLN03210 417 GL------DGKIEKTLRVSYD 431 (1153)
T ss_pred Cc------cHHHHHHHHHhhh
Confidence 43 2489999999997
No 4
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.49 E-value=1.8e-11 Score=112.47 Aligned_cols=197 Identities=14% Similarity=0.165 Sum_probs=123.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-cCCCHHHHHHHHHHHh-
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-QNRSFEEKASGIFNLL- 250 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-~~~~~~~~~~~l~~~L- 250 (397)
...+.+.|+|++|+|||||++.+++.. .. ..+ ..+|+ +....+..+++..|...++.. ...+.......+...+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999999987 21 211 22333 333457788999999888765 2233333334443332
Q ss_pred ----cCCcEEEEEecCCCc--hhhhhcCCC--CCCCCCCCcEEEEEcCChhhhhhhc----------cCceeecCCCChH
Q 041476 251 ----SKMKFLLLLDDIWER--IDLAKMGVP--FPASSRNASKIVFTTRLVDVCGLME----------AQKTFKVECLADQ 312 (397)
Q Consensus 251 ----~~kr~LlVlDdv~~~--~~~~~l~~~--l~~~~~~gs~IlvTtR~~~v~~~~~----------~~~~~~l~~L~~~ 312 (397)
.+++++||+||++.. ..++.+... +.........|++|.... ....+. ....+++.+|+.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 578899999999864 334443211 012222333555655432 211111 1346789999999
Q ss_pred hHHHHHHHHhCCccCC-CCCChHHHHHHHHHHcCCchhHHHHHHHhhcC------C--CChhHHHHHHHHH
Q 041476 313 DAWELFQKKVGEETLE-SHPDIPELAQTVANECSGLPLALITTGRAMSS------K--KTPEEWSYAIQML 374 (397)
Q Consensus 313 ~~~~Lf~~~~~~~~~~-~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~------~--~~~~~w~~~~~~l 374 (397)
+..+++...+...... ...-..+..+.|++.|+|.|..|..++..+.. + -+.+.++.+...+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999998876433211 11233577899999999999999999877621 1 2555666555544
No 5
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.47 E-value=2.4e-13 Score=121.88 Aligned_cols=191 Identities=19% Similarity=0.207 Sum_probs=102.1
Q ss_pred cccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHH--------
Q 041476 156 IVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKI-------- 227 (397)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i-------- 227 (397)
|+||+.++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.. +..-...+|+......+.. ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNES-SLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHHH-HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhhh-HHHHHHHHHHHHH
Confidence 79999999999999988778999999999999999999999986 2211134444443333221 12221
Q ss_pred --HHhhCcc----c--------CCCHHHHHHHHHHHhc--CCcEEEEEecCCCch-h-------hhhcCCCC--CCCCCC
Q 041476 228 --GERIGWL----Q--------NRSFEEKASGIFNLLS--KMKFLLLLDDIWERI-D-------LAKMGVPF--PASSRN 281 (397)
Q Consensus 228 --~~~l~~~----~--------~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~-~-------~~~l~~~l--~~~~~~ 281 (397)
...+... . ..........+.+.+. +++++||+||+.... . ...+...+ ... ..
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cC
Confidence 1111110 0 0112223333444443 346999999996543 1 11111110 112 23
Q ss_pred CcEEEEEcCChhhhhh--------hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHH
Q 041476 282 ASKIVFTTRLVDVCGL--------MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALIT 353 (397)
Q Consensus 282 gs~IlvTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 353 (397)
...+|+++.+...... .+....+.+++|+.+++++++...+... ... +...+..++|+..+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 3445555554444322 2333459999999999999999976433 122 22355579999999999998864
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.46 E-value=1.3e-11 Score=119.94 Aligned_cols=220 Identities=15% Similarity=0.111 Sum_probs=139.1
Q ss_pred CCccccchhhHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 153 QPTIVGLESTFDKVWRCLVE----GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
++.++||+.++++|...+.+ ...+.+.|+|++|+|||++++.++++. ......-..+++++....+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 46799999999999998743 345678899999999999999999987 2222234567777777778889999999
Q ss_pred HhhCcc----cCCCHHHHHHHHHHHhc--CCcEEEEEecCCCch------hhhhcCCCCCCCC-CCCcEEEEEcCChhhh
Q 041476 229 ERIGWL----QNRSFEEKASGIFNLLS--KMKFLLLLDDIWERI------DLAKMGVPFPASS-RNASKIVFTTRLVDVC 295 (397)
Q Consensus 229 ~~l~~~----~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~------~~~~l~~~l~~~~-~~gs~IlvTtR~~~v~ 295 (397)
+++... ...+..+....+.+.+. +++.+||||+++... .+..+... .... +....+|.++....+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~-~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRA-HEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHh-hhccCCCeEEEEEEECCcchh
Confidence 998752 23355667777777775 456899999997532 22333222 1111 1123356555554432
Q ss_pred hhhc-------cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHH----cCCchhHHHHHHHh--hc---
Q 041476 296 GLME-------AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANE----CSGLPLALITTGRA--MS--- 359 (397)
Q Consensus 296 ~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~----c~GlPLai~~~~~~--L~--- 359 (397)
.... ....+.+.+++.++..+++..++.... ....-..+..+.|++. .|..+.|+.++-.. ++
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 2111 124679999999999999998763211 0001112333444444 45577777776432 21
Q ss_pred CC--CChhHHHHHHHHHh
Q 041476 360 SK--KTPEEWSYAIQMLR 375 (397)
Q Consensus 360 ~~--~~~~~w~~~~~~l~ 375 (397)
+. -+.+..+.+.+.+.
T Consensus 266 ~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 11 26677777776653
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.33 E-value=1.8e-10 Score=110.73 Aligned_cols=223 Identities=11% Similarity=0.115 Sum_probs=135.6
Q ss_pred CCccccchhhHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC---CeEEEEEeCCcCCHHHHHH
Q 041476 153 QPTIVGLESTFDKVWRCLVE----GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYF---DIVIWVVVSKDMQLERIQQ 225 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~~~~~~~i~~ 225 (397)
++.++||+.++++|...|.+ ...+.+.|+|++|+|||++++.+++......... -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 35789999999999999864 3456899999999999999999998762111111 2467788877778889999
Q ss_pred HHHHhhC---cc---cCCCHHHHHHHHHHHhc--CCcEEEEEecCCCch-h----hhhcCCCCCCCCC--CCcEEEEEcC
Q 041476 226 KIGERIG---WL---QNRSFEEKASGIFNLLS--KMKFLLLLDDIWERI-D----LAKMGVPFPASSR--NASKIVFTTR 290 (397)
Q Consensus 226 ~i~~~l~---~~---~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~-~----~~~l~~~l~~~~~--~gs~IlvTtR 290 (397)
.|++++. .. ...+..+....+.+.+. +++++||||+++... . +..+......... ....+|.++.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 9999884 22 22344555666666664 567899999997541 1 2222111001111 2334455554
Q ss_pred Chhhhhhhc-------cCceeecCCCChHhHHHHHHHHhCCc--cCCCCCChHHHHHHHHHHcCCchhHH-HHHHH--hh
Q 041476 291 LVDVCGLME-------AQKTFKVECLADQDAWELFQKKVGEE--TLESHPDIPELAQTVANECSGLPLAL-ITTGR--AM 358 (397)
Q Consensus 291 ~~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~~~I~~~c~GlPLai-~~~~~--~L 358 (397)
.......+. ....+.+.+++.++..+++..++... ....+++..+.+..++..+.|.|-.+ .++-. .+
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 333211111 12468999999999999999886421 11122333344556777777888544 33221 11
Q ss_pred --c-C--CCChhHHHHHHHHHh
Q 041476 359 --S-S--KKTPEEWSYAIQMLR 375 (397)
Q Consensus 359 --~-~--~~~~~~w~~~~~~l~ 375 (397)
. + .-+.+..+.+.+.+.
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH
Confidence 1 1 135666666655553
No 8
>PF05729 NACHT: NACHT domain
Probab=99.28 E-value=2.2e-11 Score=103.07 Aligned_cols=142 Identities=16% Similarity=0.216 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCC----CCeEEEEEeCCcCCHH---HHHHHHHHhhCcccCCCHHHHHHHHHH
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNY----FDIVIWVVVSKDMQLE---RIQQKIGERIGWLQNRSFEEKASGIFN 248 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~---~i~~~i~~~l~~~~~~~~~~~~~~l~~ 248 (397)
+++.|+|.+|+||||+++.++.... .... +...+|++........ .+...|..+.... ...... .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~---~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA-EEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-IAPIEE---LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH-hcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-hhhhHH---HHHH
Confidence 5789999999999999999998873 2222 4567777765543322 3444444443321 111111 2222
Q ss_pred H-hcCCcEEEEEecCCCchh---------hhhcCCCCCCC-CCCCcEEEEEcCChhh---hhhhccCceeecCCCChHhH
Q 041476 249 L-LSKMKFLLLLDDIWERID---------LAKMGVPFPAS-SRNASKIVFTTRLVDV---CGLMEAQKTFKVECLADQDA 314 (397)
Q Consensus 249 ~-L~~kr~LlVlDdv~~~~~---------~~~l~~~l~~~-~~~gs~IlvTtR~~~v---~~~~~~~~~~~l~~L~~~~~ 314 (397)
. .+.++++||||++++... +..+...++.. ..+++++++|+|.... .........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 2 256899999999975322 22222221222 3568999999998776 33334456899999999999
Q ss_pred HHHHHHHh
Q 041476 315 WELFQKKV 322 (397)
Q Consensus 315 ~~Lf~~~~ 322 (397)
.+++.+.+
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998765
No 9
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.26 E-value=2.3e-10 Score=122.89 Aligned_cols=192 Identities=17% Similarity=0.185 Sum_probs=124.1
Q ss_pred CCccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC-CcCCHHHHHHHHHHhh
Q 041476 153 QPTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVS-KDMQLERIQQKIGERI 231 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs-~~~~~~~i~~~i~~~l 231 (397)
++.++-|..-.+.+-.. ...+++.|+|++|.||||++.++.+.. . .++|+++. .+.++..+...++..+
T Consensus 13 ~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 13 LHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred ccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHH
Confidence 45667777655555321 357899999999999999999988543 2 58999986 4456666777777766
Q ss_pred Ccc--c-------------CCCHHHHHHHHHHHhc--CCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCCh
Q 041476 232 GWL--Q-------------NRSFEEKASGIFNLLS--KMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLV 292 (397)
Q Consensus 232 ~~~--~-------------~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~ 292 (397)
... . ..+.......+...+. +.+++|||||+... .....+...++.....+.++|+|||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 421 0 0122223333333333 67899999999642 222222222233345567888999984
Q ss_pred hhh---hhhccCceeecC----CCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcC
Q 041476 293 DVC---GLMEAQKTFKVE----CLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSS 360 (397)
Q Consensus 293 ~v~---~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~ 360 (397)
.-. ...-......+. +|+.+|+.+||....+.. -..+....|.+.|+|.|+++..++..+..
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP------IEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC------CCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 321 111122344555 999999999998765432 12345789999999999999998877654
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.21 E-value=1.5e-09 Score=101.64 Aligned_cols=204 Identities=16% Similarity=0.114 Sum_probs=116.9
Q ss_pred CccccchhhHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVE-----GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
..|+|++..++.|..++.. .....+.++|++|+|||+||+.+++.. ...+ ..+..+.......+ ...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhH-HHHH
Confidence 3589999999999888862 345678899999999999999999987 2222 11222111111222 2222
Q ss_pred HhhCcc--------cCCCHHHHHHHHHHHhcCCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhhhhhc-
Q 041476 229 ERIGWL--------QNRSFEEKASGIFNLLSKMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVCGLME- 299 (397)
Q Consensus 229 ~~l~~~--------~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~~~- 299 (397)
..+... ...+ ....+.+...+.+.+..+|+|+..+...+.. . + .+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~-~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---D-L---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---c-C---CCeEEEEecCCccccCHHHHh
Confidence 222211 0000 1122334444555555555555433322221 1 1 12455666777654432211
Q ss_pred -cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhh------cC-C-CChhHHHHH
Q 041476 300 -AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAM------SS-K-KTPEEWSYA 370 (397)
Q Consensus 300 -~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L------~~-~-~~~~~w~~~ 370 (397)
....+.+++++.++..+++.+.+...... -..+..+.|++.|+|.|-.+..++..+ .. . .+.+..+.+
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~---~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~ 225 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVE---IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKA 225 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 23467999999999999999887643322 224567899999999997765555332 11 1 355555666
Q ss_pred HHHHh
Q 041476 371 IQMLR 375 (397)
Q Consensus 371 ~~~l~ 375 (397)
+..+.
T Consensus 226 l~~l~ 230 (305)
T TIGR00635 226 LEMLM 230 (305)
T ss_pred HHHhC
Confidence 65543
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.15 E-value=5.1e-09 Score=98.91 Aligned_cols=186 Identities=14% Similarity=0.058 Sum_probs=104.1
Q ss_pred CccccchhhHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVE-----GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
..|+|++..++.+..++.. ...+.+.|+|++|+|||+||+.+++.. . ..+ .++..+. .....-+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEeccc-ccChHHHHHHH
Confidence 4689999999998877752 345688999999999999999999987 2 222 1122111 11111222222
Q ss_pred HhhCccc-----C-CC-HHHHHHHHHHHhcCCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhhhhhc--
Q 041476 229 ERIGWLQ-----N-RS-FEEKASGIFNLLSKMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVCGLME-- 299 (397)
Q Consensus 229 ~~l~~~~-----~-~~-~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~~~-- 299 (397)
..+.... . .. .....+.+...+.+.+..+++|+-.+...... . + .+.+-|..|++...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~-l---~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---D-L---PPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---c-C---CCceEEeecCCcccCCHHHHHh
Confidence 2222110 0 00 00111222333333334444443322111110 0 1 12345666777554432221
Q ss_pred cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHH
Q 041476 300 AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGR 356 (397)
Q Consensus 300 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 356 (397)
....+++.+++.++..+++.+.+....... ..+....|++.|+|.|-.+..+..
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVEI---DEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHcCCCchHHHHHHH
Confidence 234689999999999999998876543222 245689999999999976655554
No 12
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.12 E-value=2.5e-09 Score=99.00 Aligned_cols=171 Identities=19% Similarity=0.220 Sum_probs=106.8
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCc
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGW 233 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (397)
.+++|-+..+ -.++..+.+....+|||+|+||||||+.+.... ...|. .++...+-..=++.+
T Consensus 30 ~HLlg~~~~l---rr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~-----~~sAv~~gvkdlr~i------ 92 (436)
T COG2256 30 EHLLGEGKPL---RRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE-----ALSAVTSGVKDLREI------ 92 (436)
T ss_pred HhhhCCCchH---HHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE-----EeccccccHHHHHHH------
Confidence 3444444444 444556788888899999999999999999876 34442 333222211111222
Q ss_pred ccCCCHHHHHHHH-HHHhcCCcEEEEEecCC--CchhhhhcCCCCCCCCCCCcEEEE--EcCChhh---hhhhccCceee
Q 041476 234 LQNRSFEEKASGI-FNLLSKMKFLLLLDDIW--ERIDLAKMGVPFPASSRNASKIVF--TTRLVDV---CGLMEAQKTFK 305 (397)
Q Consensus 234 ~~~~~~~~~~~~l-~~~L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~~gs~Ilv--TtR~~~v---~~~~~~~~~~~ 305 (397)
.+.- +....+++.+|++|+|. +..+.+.+ +|.-..|.-|+| ||-++.. ....+-..++.
T Consensus 93 ---------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l----Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~ 159 (436)
T COG2256 93 ---------IEEARKNRLLGRRTILFLDEIHRFNKAQQDAL----LPHVENGTIILIGATTENPSFELNPALLSRARVFE 159 (436)
T ss_pred ---------HHHHHHHHhcCCceEEEEehhhhcChhhhhhh----hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheee
Confidence 2222 22234899999999996 34455554 555677887776 5555543 23334567999
Q ss_pred cCCCChHhHHHHHHHHhCCccCC---CCCC-hHHHHHHHHHHcCCchhHHHHH
Q 041476 306 VECLADQDAWELFQKKVGEETLE---SHPD-IPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 306 l~~L~~~~~~~Lf~~~~~~~~~~---~~~~-~~~~~~~I~~~c~GlPLai~~~ 354 (397)
+++|+.++-..++.+.+...... .... .++..+.|+..++|---++-..
T Consensus 160 lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~ 212 (436)
T COG2256 160 LKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNL 212 (436)
T ss_pred eecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHH
Confidence 99999999999999954322211 1111 2446788999999966554433
No 13
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.09 E-value=4.6e-09 Score=102.25 Aligned_cols=178 Identities=17% Similarity=0.166 Sum_probs=108.8
Q ss_pred CccccchhhHHH---HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHh
Q 041476 154 PTIVGLESTFDK---VWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGER 230 (397)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~ 230 (397)
+.++|++..+.. +..++..+..+.+.|+|++|+||||||+.+++.. ...| +.++....-..-++.+..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii~- 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVIE- 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHHH-
Confidence 357898877655 7777777777788999999999999999999876 2232 222221111111112221
Q ss_pred hCcccCCCHHHHHHHHHHH-hcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEE--EcCChhh---hhhhccCc
Q 041476 231 IGWLQNRSFEEKASGIFNL-LSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVF--TTRLVDV---CGLMEAQK 302 (397)
Q Consensus 231 l~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Ilv--TtR~~~v---~~~~~~~~ 302 (397)
..... ..+++.+|+||+++.. ...+.+... + ..+..+++ ||.+... ....+...
T Consensus 83 --------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~-l---e~~~iilI~att~n~~~~l~~aL~SR~~ 144 (413)
T PRK13342 83 --------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPH-V---EDGTITLIGATTENPSFEVNPALLSRAQ 144 (413)
T ss_pred --------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHH-h---hcCcEEEEEeCCCChhhhccHHHhccce
Confidence 11111 2457899999999853 344444333 2 22444444 3444321 12223346
Q ss_pred eeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhh
Q 041476 303 TFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAM 358 (397)
Q Consensus 303 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 358 (397)
.+.+.+++.++...++.+.+.........-..+..+.|++.|+|.|..+..+...+
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88999999999999999876432111112235667899999999998776554433
No 14
>PRK06893 DNA replication initiation factor; Validated
Probab=99.08 E-value=1.6e-09 Score=96.77 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=96.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKM 253 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~k 253 (397)
..+.+.|+|++|+|||+|++.+++... .....+.|++.... ...... +.+.+. +
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~---~~~~~~-------------------~~~~~~-~ 91 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKS---QYFSPA-------------------VLENLE-Q 91 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHh---hhhhHH-------------------HHhhcc-c
Confidence 446789999999999999999999872 22334566665321 000001 111122 2
Q ss_pred cEEEEEecCCCc---hhhhh-cCCCCCCC-CCCCcEEE-EEcCC---------hhhhhhhccCceeecCCCChHhHHHHH
Q 041476 254 KFLLLLDDIWER---IDLAK-MGVPFPAS-SRNASKIV-FTTRL---------VDVCGLMEAQKTFKVECLADQDAWELF 318 (397)
Q Consensus 254 r~LlVlDdv~~~---~~~~~-l~~~l~~~-~~~gs~Il-vTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf 318 (397)
.-+|+|||+|.. ..|.. +... +.. ...|+.+| +|+.. +.+...+.....++++++++++.++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l-~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDL-FNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHH-HHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 349999999852 44543 2111 211 12345554 45544 344555566778999999999999999
Q ss_pred HHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhh
Q 041476 319 QKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAM 358 (397)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 358 (397)
++.+....... .++..+-|++.+.|..-.+..+-..|
T Consensus 171 ~~~a~~~~l~l---~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRGIEL---SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99886443222 35667889999988776665554433
No 15
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.00 E-value=5.9e-09 Score=93.17 Aligned_cols=169 Identities=15% Similarity=0.095 Sum_probs=102.6
Q ss_pred chhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCC
Q 041476 159 LESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRS 238 (397)
Q Consensus 159 r~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~ 238 (397)
.+..++.+..++.....+.+.|+|++|+|||+||+.+++... ......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-----------
Confidence 344667777776556678899999999999999999998872 2233455665543211 00
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCCCch---hhh-hcCCCCCCC-CCCCcEEEEEcCChhh---------hhhhccCcee
Q 041476 239 FEEKASGIFNLLSKMKFLLLLDDIWERI---DLA-KMGVPFPAS-SRNASKIVFTTRLVDV---------CGLMEAQKTF 304 (397)
Q Consensus 239 ~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~-~l~~~l~~~-~~~gs~IlvTtR~~~v---------~~~~~~~~~~ 304 (397)
..+...+.+ .-+|||||++... .|. .+... +.. ...+..+|+|++.... ...+.....+
T Consensus 82 -----~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~-l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i 154 (226)
T TIGR03420 82 -----PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHL-YNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred -----HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHH-HHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence 011112222 3489999997432 232 23221 111 1223578888875331 2222234678
Q ss_pred ecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHh
Q 041476 305 KVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRA 357 (397)
Q Consensus 305 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~ 357 (397)
++.++++++...++.+.+..... +-..+..+.|.+.+.|.|..+.-+...
T Consensus 155 ~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 99999999999999876532221 122455688888899988887766433
No 16
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.99 E-value=1.2e-08 Score=93.01 Aligned_cols=163 Identities=18% Similarity=0.151 Sum_probs=107.2
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHH
Q 041476 166 VWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASG 245 (397)
Q Consensus 166 l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~ 245 (397)
|.+++..+..+.+.+||++|+||||||+.+.+.. +.+- ..||..|....-..=.+.|+++-..
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~aq~------------ 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQAQN------------ 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHHHH------------
Confidence 3444455788889999999999999999999886 3332 5577776554433334444433221
Q ss_pred HHHHhcCCcEEEEEecCC--CchhhhhcCCCCCCCCCCCcEEEE--EcCChhh---hhhhccCceeecCCCChHhHHHHH
Q 041476 246 IFNLLSKMKFLLLLDDIW--ERIDLAKMGVPFPASSRNASKIVF--TTRLVDV---CGLMEAQKTFKVECLADQDAWELF 318 (397)
Q Consensus 246 l~~~L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~~gs~Ilv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~Lf 318 (397)
...+.++|.+|++|+|. +..+.+.+ +|...+|.-++| ||.++.. +..+....++-|++|..++-..++
T Consensus 216 -~~~l~krkTilFiDEiHRFNksQQD~f----LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL 290 (554)
T KOG2028|consen 216 -EKSLTKRKTILFIDEIHRFNKSQQDTF----LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTIL 290 (554)
T ss_pred -HHhhhcceeEEEeHHhhhhhhhhhhcc----cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHH
Confidence 12346789999999995 33444443 566777887776 6666554 345556789999999999999999
Q ss_pred HHHhC---Ccc---CCCCC----ChHHHHHHHHHHcCCchhH
Q 041476 319 QKKVG---EET---LESHP----DIPELAQTVANECSGLPLA 350 (397)
Q Consensus 319 ~~~~~---~~~---~~~~~----~~~~~~~~I~~~c~GlPLa 350 (397)
.+... ... .+.+. -...+.+-++..|.|-.-+
T Consensus 291 ~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 291 MRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred HHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 88432 111 11111 1234678888889886543
No 17
>PF13173 AAA_14: AAA domain
Probab=98.89 E-value=5.1e-09 Score=84.76 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=80.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCc
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMK 254 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr 254 (397)
.+++.|.|+.|+|||||+++++.+. . ....+++++............ +..+.+.+....++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLADP---------------DLLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHhhh---------------hhHHHHHHhhccCC
Confidence 4789999999999999999999887 1 445667776654432111000 02233333344478
Q ss_pred EEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhhhh------hccCceeecCCCChHhH
Q 041476 255 FLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVCGL------MEAQKTFKVECLADQDA 314 (397)
Q Consensus 255 ~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 314 (397)
.+|+||++....+|...... +.+..+..+|++|+.+...... .+....+++.||+-.|.
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~-l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKF-LVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhhccHHHHHHH-HHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999988888777655 4444466899999998776422 12234689999997763
No 18
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=1e-07 Score=96.14 Aligned_cols=190 Identities=18% Similarity=0.171 Sum_probs=110.6
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHh--
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGER-- 230 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~-- 230 (397)
+.++|.+..++.|.+++..+++ ..+.++|+.|+||||+|+.+.+... ....+.. ..+..+ .....|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~~---~PCG~C----~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVTS---QPCGVC----RACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCCC---CCCccc----HHHHHHhcCCC
Confidence 3579999999999999987764 4568999999999999999888762 1111100 001111 111111110
Q ss_pred -----hCcccCCCHHHHHHHHHHH----hcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCChh-hh-hh
Q 041476 231 -----IGWLQNRSFEEKASGIFNL----LSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLVD-VC-GL 297 (397)
Q Consensus 231 -----l~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~~-v~-~~ 297 (397)
+........++..+.+... ..++.-++|||+++.. ..++.++.. +-....+.++|++|++.. +. ..
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKt-LEEPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKT-LEEPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHH-HHhcCCCeEEEEEECChhhccchh
Confidence 0000111122222222211 1245568999999754 346665444 322234567776666543 32 22
Q ss_pred hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch-hHHHHHH
Q 041476 298 MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP-LALITTG 355 (397)
Q Consensus 298 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~ 355 (397)
.+-...|++++++.++..+.+.+.+....... ..+..+.|++.++|.. -++.++-
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 23456899999999999999988875443222 2456788999998855 4555533
No 19
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.85 E-value=2.3e-06 Score=87.14 Aligned_cols=199 Identities=14% Similarity=0.010 Sum_probs=119.3
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC---CeEEEEEeCCc---CCHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYF---DIVIWVVVSKD---MQLERIQQKI 227 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~~---~~~~~i~~~i 227 (397)
+.++|++..+..+...+.......+.|+|++|+||||||+.+++.. .....+ ...-|+.+... .+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 3579999999998888876667789999999999999999998776 222222 12345544321 1222221111
Q ss_pred H---------------HhhC-------------cc-----c-CCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhc
Q 041476 228 G---------------ERIG-------------WL-----Q-NRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKM 271 (397)
Q Consensus 228 ~---------------~~l~-------------~~-----~-~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l 271 (397)
+ ...+ .. . ..=....+..+.+.+++++++++-|+.|.. ..|..+
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 1 1111 00 0 001123466778888888888887766643 446666
Q ss_pred CCCCCCCCCCCcEEEE--EcCChhh-hhhh-ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCc
Q 041476 272 GVPFPASSRNASKIVF--TTRLVDV-CGLM-EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGL 347 (397)
Q Consensus 272 ~~~l~~~~~~gs~Ilv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 347 (397)
... +....+...+++ ||++... ...+ .....+.+.+++.++.+.++.+.+....... ..+..+.|.+.+..-
T Consensus 313 k~~-~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~~g 388 (615)
T TIGR02903 313 KKL-FEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTIEG 388 (615)
T ss_pred hhh-cccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCCcH
Confidence 554 444444444554 5554432 1111 2234678999999999999999775332111 244566677766655
Q ss_pred hhHHHHHHHh
Q 041476 348 PLALITTGRA 357 (397)
Q Consensus 348 PLai~~~~~~ 357 (397)
+-++..++.+
T Consensus 389 Rraln~L~~~ 398 (615)
T TIGR02903 389 RKAVNILADV 398 (615)
T ss_pred HHHHHHHHHH
Confidence 7777766544
No 20
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.85 E-value=7.8e-08 Score=91.33 Aligned_cols=195 Identities=12% Similarity=0.073 Sum_probs=110.2
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCcCCHHHHHHHHHH---
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFD-IVIWVVVSKDMQLERIQQKIGE--- 229 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~i~~~i~~--- 229 (397)
+.++|++..++.+..++..+..+.+.++|++|+||||+|+.+.+... ...+. ..+.++++...+ .....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFD--QGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhh--cchhhhhcCcc
Confidence 45899999999999998877767789999999999999999998872 12222 234444432110 00000000
Q ss_pred ---hhCc--ccCCCHHHHHHHH-HHH---h--cCCcEEEEEecCCCch--hhhhcCCCCCCCCCCCcEEEEEcCChh-hh
Q 041476 230 ---RIGW--LQNRSFEEKASGI-FNL---L--SKMKFLLLLDDIWERI--DLAKMGVPFPASSRNASKIVFTTRLVD-VC 295 (397)
Q Consensus 230 ---~l~~--~~~~~~~~~~~~l-~~~---L--~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~~gs~IlvTtR~~~-v~ 295 (397)
.++. ............+ ... . .+.+-+|||||+.... ....+... +......+++|+|+.+.. +.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~-le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRI-MEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHH-HHhccCCCeEEEEeCChhhCc
Confidence 0000 0000111111111 111 1 2345589999996532 23333222 222233466777765432 22
Q ss_pred hhh-ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHH
Q 041476 296 GLM-EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGR 356 (397)
Q Consensus 296 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 356 (397)
..+ .....+.+.+++.++...++.+.+....... ..+..+.+++.++|.+-.+.....
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY---DDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 212 2345788999999999999988765433222 245678889999887766554443
No 21
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.8e-07 Score=86.00 Aligned_cols=196 Identities=15% Similarity=0.202 Sum_probs=128.2
Q ss_pred CccccchhhHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVE----GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~ 229 (397)
..+.+|+.+++++...|.. ..+.-+.|+|++|+|||+.++.+.+.........+ +++|++-...++.+++..|++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 4589999999999988764 33445999999999999999999999832212222 899999999999999999999
Q ss_pred hhCcc--cCCCHHHHHHHHHHHhc--CCcEEEEEecCCCchh-----hhhcCCCCCCCCCCCcE--EEEEcCChhhhhhh
Q 041476 230 RIGWL--QNRSFEEKASGIFNLLS--KMKFLLLLDDIWERID-----LAKMGVPFPASSRNASK--IVFTTRLVDVCGLM 298 (397)
Q Consensus 230 ~l~~~--~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~-----~~~l~~~l~~~~~~gs~--IlvTtR~~~v~~~~ 298 (397)
+++.. ......+....+.+.+. ++.+++|||+++.... +-.+... .... .++ +|..+-+......+
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~-~~~~--~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRA-PGEN--KVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhh-cccc--ceeEEEEEEeccHHHHHHh
Confidence 99643 34566677777777775 4789999999975322 2223222 1111 343 33444444332222
Q ss_pred c-------cCceeecCCCChHhHHHHHHHHhC---CccCCCCCChHHHHHHHHHHcC-CchhHHHHH
Q 041476 299 E-------AQKTFKVECLADQDAWELFQKKVG---EETLESHPDIPELAQTVANECS-GLPLALITT 354 (397)
Q Consensus 299 ~-------~~~~~~l~~L~~~~~~~Lf~~~~~---~~~~~~~~~~~~~~~~I~~~c~-GlPLai~~~ 354 (397)
. ....+...|-+.+|-.+++..++. ... ..++..-+++-.++..-+ -.=.||..+
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 1 122477889999999999988763 333 233344444444444444 444455444
No 22
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.4e-07 Score=88.54 Aligned_cols=175 Identities=16% Similarity=0.228 Sum_probs=113.6
Q ss_pred ccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhc---cCCCCCCeEEEEEe-CCcCCHHHHHHHHHH
Q 041476 155 TIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFL---HTPNYFDIVIWVVV-SKDMQLERIQQKIGE 229 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~---~~~~~f~~~~wv~v-s~~~~~~~i~~~i~~ 229 (397)
.++|.+..++.+..++..+.. +.+.++|+.|+||||+|+.++.... ....|+|...|... +.....+++ +++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHHH
Confidence 578999999999999987655 4668999999999999999998652 12456776666552 233333332 22222
Q ss_pred hhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCC--CchhhhhcCCCCCCCCCCCcEEEEEcCChhhh-h-hhccCceee
Q 041476 230 RIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIW--ERIDLAKMGVPFPASSRNASKIVFTTRLVDVC-G-LMEAQKTFK 305 (397)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~-~-~~~~~~~~~ 305 (397)
.+... -..+++-++|+|+++ +...++.+... +.....++.+|++|.+.+.. . ..+....++
T Consensus 84 ~~~~~--------------p~~~~~kv~iI~~ad~m~~~a~naLLK~-LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~ 148 (313)
T PRK05564 84 EVNKK--------------PYEGDKKVIIIYNSEKMTEQAQNAFLKT-IEEPPKGVFIILLCENLEQILDTIKSRCQIYK 148 (313)
T ss_pred HHhcC--------------cccCCceEEEEechhhcCHHHHHHHHHH-hcCCCCCeEEEEEeCChHhCcHHHHhhceeee
Confidence 22110 012455577777764 45667777666 54555678888888665432 1 123356899
Q ss_pred cCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHH
Q 041476 306 VECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALI 352 (397)
Q Consensus 306 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 352 (397)
+.++++++....+.+.... -..+.++.++..|+|.|.-+.
T Consensus 149 ~~~~~~~~~~~~l~~~~~~-------~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 149 LNRLSKEEIEKFISYKYND-------IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred CCCcCHHHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHH
Confidence 9999999998888765421 112336788889999886543
No 23
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.84 E-value=4e-08 Score=80.86 Aligned_cols=123 Identities=19% Similarity=0.106 Sum_probs=74.5
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccC
Q 041476 157 VGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQN 236 (397)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 236 (397)
+|++..+..+...+.....+.+.|+|++|+|||++++.+++... ..-..++++..+...........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47788889999888776678899999999999999999999872 222456666655443322211111100
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEEecCCCc-----hhhhhcCCCCCCC---CCCCcEEEEEcCChh
Q 041476 237 RSFEEKASGIFNLLSKMKFLLLLDDIWER-----IDLAKMGVPFPAS---SRNASKIVFTTRLVD 293 (397)
Q Consensus 237 ~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----~~~~~l~~~l~~~---~~~gs~IlvTtR~~~ 293 (397)
............++.+|++||++.. ..+..+... ... ...+..+|+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLET-LNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHh-cCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999853 222222222 111 135678888888654
No 24
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.83 E-value=6.1e-08 Score=101.83 Aligned_cols=200 Identities=14% Similarity=0.211 Sum_probs=117.7
Q ss_pred cccchhhHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC---CHHHHHHHHHH
Q 041476 156 IVGLESTFDKVWRCLVE---GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM---QLERIQQKIGE 229 (397)
Q Consensus 156 ~vGr~~~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~---~~~~i~~~i~~ 229 (397)
++||+.+++.|...+.. +...++.+.|.+|+|||+|+++|.....+.++.|-...+-....+. ...+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 69999999999998865 5667999999999999999999999873222222222222222222 22333444444
Q ss_pred hh-------------------Ccc---------------c---------CCCHHH-----HHHHHHHHh-cCCcEEEEEe
Q 041476 230 RI-------------------GWL---------------Q---------NRSFEE-----KASGIFNLL-SKMKFLLLLD 260 (397)
Q Consensus 230 ~l-------------------~~~---------------~---------~~~~~~-----~~~~l~~~L-~~kr~LlVlD 260 (397)
++ +.. . ...... ....+..+. +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 110 0 000010 111222222 3469999999
Q ss_pred cC-CCch-hhhhcCCCCCCCCC----CCcEEE--EEcCCh--hhhhhhccCceeecCCCChHhHHHHHHHHhCCccCCCC
Q 041476 261 DI-WERI-DLAKMGVPFPASSR----NASKIV--FTTRLV--DVCGLMEAQKTFKVECLADQDAWELFQKKVGEETLESH 330 (397)
Q Consensus 261 dv-~~~~-~~~~l~~~l~~~~~----~gs~Il--vTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 330 (397)
|+ |-+. .++-+... ..... .-..+. .|.+.. .+-....+...|.|.||+..+...|.........
T Consensus 162 DlhWaD~~SL~lL~~l-m~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---- 236 (849)
T COG3899 162 DLHWADSASLKLLQLL-MDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---- 236 (849)
T ss_pred cccccChhHHHHHHHH-HHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----
Confidence 99 5432 22211110 00000 001222 222222 1112223446899999999999999999886533
Q ss_pred CChHHHHHHHHHHcCCchhHHHHHHHhhcC
Q 041476 331 PDIPELAQTVANECSGLPLALITTGRAMSS 360 (397)
Q Consensus 331 ~~~~~~~~~I~~~c~GlPLai~~~~~~L~~ 360 (397)
....+..+.|+++..|+|+.+.-+-..|..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 234567899999999999999999887766
No 25
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.83 E-value=8.2e-08 Score=97.59 Aligned_cols=219 Identities=16% Similarity=0.106 Sum_probs=126.0
Q ss_pred CCccccchhhHHHHHHHHhc----C-CceEEEEEcCCCCcHHHHHHHHHhhhccC--CCCCC--eEEEEEeCCcCCHHHH
Q 041476 153 QPTIVGLESTFDKVWRCLVE----G-QFGIIGLYGMGGVGKTTLLAQINNKFLHT--PNYFD--IVIWVVVSKDMQLERI 223 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~-~~~vi~I~G~~GvGKTtLa~~v~~~~~~~--~~~f~--~~~wv~vs~~~~~~~i 223 (397)
|+.+.||+.|+++|...|.. . ...++.|+|++|+|||++++.|.+..... ..... .+++|.+..-.++..+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45689999999999988864 2 23577899999999999999998776211 11122 3677777777788899
Q ss_pred HHHHHHhhCcc---cCCCHHHHHHHHHHHhc---CCcEEEEEecCCCch--h---hhhcCCCCCCCCCCCcEEEE--EcC
Q 041476 224 QQKIGERIGWL---QNRSFEEKASGIFNLLS---KMKFLLLLDDIWERI--D---LAKMGVPFPASSRNASKIVF--TTR 290 (397)
Q Consensus 224 ~~~i~~~l~~~---~~~~~~~~~~~l~~~L~---~kr~LlVlDdv~~~~--~---~~~l~~~l~~~~~~gs~Ilv--TtR 290 (397)
+..|.+++... ...........+...+. +...+||||+++... . +-.+... + ...+++|++ .+.
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~--~-~~s~SKLiLIGISN 910 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW--P-TKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH--h-hccCCeEEEEEecC
Confidence 99999988543 22233344555555442 234699999997431 1 1111111 1 123444443 333
Q ss_pred Chhhh----hhhcc---CceeecCCCChHhHHHHHHHHhCCccCCCCC-ChHHHHHHHHHHcCCchhHHHHHHHhhcC--
Q 041476 291 LVDVC----GLMEA---QKTFKVECLADQDAWELFQKKVGEETLESHP-DIPELAQTVANECSGLPLALITTGRAMSS-- 360 (397)
Q Consensus 291 ~~~v~----~~~~~---~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~-~~~~~~~~I~~~c~GlPLai~~~~~~L~~-- 360 (397)
..... ..+.. ...+...|++.++-.+++..++.......++ .++-+++.++...|-.=.||.++-.....
T Consensus 911 dlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEike 990 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKR 990 (1164)
T ss_pred chhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcC
Confidence 22211 11111 2246779999999999999987532111122 22333343444444455666555433322
Q ss_pred C--CChhHHHHHHHHH
Q 041476 361 K--KTPEEWSYAIQML 374 (397)
Q Consensus 361 ~--~~~~~w~~~~~~l 374 (397)
. -+.++-+.+.+.+
T Consensus 991 gskVT~eHVrkAleei 1006 (1164)
T PTZ00112 991 GQKIVPRDITEATNQL 1006 (1164)
T ss_pred CCccCHHHHHHHHHHH
Confidence 1 2344555555444
No 26
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=6e-08 Score=95.98 Aligned_cols=192 Identities=17% Similarity=0.107 Sum_probs=110.7
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
.+++|.+..++.|..++..+... .+.++|++|+||||+|+.+++... ..+.+...+|.|.+.. .+......-+..++
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-CSGEDPKPCGECESCL-AVRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-ccCCCCCCCCcChhhH-HHhcCCCCceEEec
Confidence 35799999999999998877654 559999999999999999998872 1122222333322110 00000000000000
Q ss_pred cccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcC-Chhhhhhh-ccCce
Q 041476 233 WLQNRSFEEKASGIFNLL-----SKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTR-LVDVCGLM-EAQKT 303 (397)
Q Consensus 233 ~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR-~~~v~~~~-~~~~~ 303 (397)
.......+. ...+.+.+ .+++-++|||+++.. ..++.+... +......+.+|++|. ...+...+ .....
T Consensus 92 ~~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~-LEep~~~t~~Il~t~~~~kl~~~I~SRc~~ 169 (504)
T PRK14963 92 AASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKT-LEEPPEHVIFILATTEPEKMPPTILSRTQH 169 (504)
T ss_pred ccccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHH-HHhCCCCEEEEEEcCChhhCChHHhcceEE
Confidence 000111111 11222222 345679999999753 445555444 333233445555444 33433222 23568
Q ss_pred eecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHH
Q 041476 304 FKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALI 352 (397)
Q Consensus 304 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 352 (397)
+++.+++.++....+.+.+....... ..+..+.|++.++|.+--+.
T Consensus 170 ~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 170 FRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999998875433222 24567889999999886553
No 27
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=1.5e-07 Score=96.70 Aligned_cols=180 Identities=14% Similarity=0.152 Sum_probs=109.3
Q ss_pred CccccchhhHHHHHHHHhcCCceE-EEEEcCCCCcHHHHHHHHHhhhccCCCC-------------------CCeEEEEE
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGI-IGLYGMGGVGKTTLLAQINNKFLHTPNY-------------------FDIVIWVV 213 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~v-i~I~G~~GvGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 213 (397)
..++|.+..+..|.+++..+++.- +.++|+.|+||||+|+.+++.... ... |..++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 358999999999999998877665 589999999999999999988721 111 11112221
Q ss_pred eCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHH-HHhcCCcEEEEEecCCC--chhhhhcCCCCCCCCCCCcEEEEEc-
Q 041476 214 VSKDMQLERIQQKIGERIGWLQNRSFEEKASGIF-NLLSKMKFLLLLDDIWE--RIDLAKMGVPFPASSRNASKIVFTT- 289 (397)
Q Consensus 214 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~-~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IlvTt- 289 (397)
.+....+.. ++.|.. .+. .-..+++-++|||++.. ...++.++.. +-......++|++|
T Consensus 95 Aas~~kVDd-IReLie---------------~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKt-LEEPP~~vrFILaTT 157 (944)
T PRK14949 95 AASRTKVDD-TRELLD---------------NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKT-LEEPPEHVKFLLATT 157 (944)
T ss_pred cccccCHHH-HHHHHH---------------HHHhhhhcCCcEEEEEechHhcCHHHHHHHHHH-HhccCCCeEEEEECC
Confidence 111111111 112211 111 11236677999999974 3455665444 22223345555544
Q ss_pred CChhhhhh-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 290 RLVDVCGL-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 290 R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
....+... ......|++++|+.++....+.+.+..... ....+..+.|++.++|.|--+..+
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 44444322 233568999999999999999887643221 122456788999999988644433
No 28
>PRK08727 hypothetical protein; Validated
Probab=98.81 E-value=1.2e-07 Score=84.99 Aligned_cols=168 Identities=11% Similarity=0.065 Sum_probs=98.6
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccC
Q 041476 157 VGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQN 236 (397)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 236 (397)
+|-...+..+...........+.|+|++|+|||+|++.+++... .....+.|++..+ ....+..
T Consensus 23 ~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~~------- 86 (233)
T PRK08727 23 AAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLRD------- 86 (233)
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHHH-------
Confidence 33333444443333333445799999999999999999998872 2223556665422 1111110
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEEecCCCc---hhhhhcCCCCCCC-CCCCcEEEEEcCChhh---------hhhhccCce
Q 041476 237 RSFEEKASGIFNLLSKMKFLLLLDDIWER---IDLAKMGVPFPAS-SRNASKIVFTTRLVDV---------CGLMEAQKT 303 (397)
Q Consensus 237 ~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~-~~~gs~IlvTtR~~~v---------~~~~~~~~~ 303 (397)
..+.+ .+.-+|||||+... ..|......++.. ...|..||+|++...- ...+.....
T Consensus 87 ---------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~ 156 (233)
T PRK08727 87 ---------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIR 156 (233)
T ss_pred ---------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCce
Confidence 11111 12359999999642 2232221111111 1235679999985332 223334568
Q ss_pred eecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHH
Q 041476 304 FKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALIT 353 (397)
Q Consensus 304 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 353 (397)
+++++++.++...++.+.+....... .++...-|++.|+|-.-.+..
T Consensus 157 ~~l~~~~~e~~~~iL~~~a~~~~l~l---~~e~~~~La~~~~rd~r~~l~ 203 (233)
T PRK08727 157 IGLPVLDDVARAAVLRERAQRRGLAL---DEAAIDWLLTHGERELAGLVA 203 (233)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999998775433222 256678899999877666533
No 29
>PLN03025 replication factor C subunit; Provisional
Probab=98.80 E-value=1.4e-07 Score=88.85 Aligned_cols=180 Identities=16% Similarity=0.166 Sum_probs=105.9
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCcCCHHHHHHHHHHhhCc
Q 041476 155 TIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFD-IVIWVVVSKDMQLERIQQKIGERIGW 233 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (397)
.++|.++.+..|..++..++.+.+.++|++|+||||+|+.+++... ...|. .++-++.+...... ..++++..+..
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~~ 90 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMFAQ 90 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHHHh
Confidence 5789998888888888877777788999999999999999998862 12222 12222222222222 22222211110
Q ss_pred ccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCCh-hhhh-hhccCceeecCCC
Q 041476 234 LQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLV-DVCG-LMEAQKTFKVECL 309 (397)
Q Consensus 234 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~-~v~~-~~~~~~~~~l~~L 309 (397)
... ..-.++.-+++||+++.. ...+.+... +-.....+++++++... .+.. ..+....++++++
T Consensus 91 ~~~-----------~~~~~~~kviiiDE~d~lt~~aq~aL~~~-lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 91 KKV-----------TLPPGRHKIVILDEADSMTSGAQQALRRT-MEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred ccc-----------cCCCCCeEEEEEechhhcCHHHHHHHHHH-HhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 000 000245679999999753 233333322 21223346676666432 2211 1123457899999
Q ss_pred ChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHH
Q 041476 310 ADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALI 352 (397)
Q Consensus 310 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 352 (397)
++++....+...+.......+ .+..+.|++.|+|-.-.+.
T Consensus 159 ~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 159 SDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred CHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 999999999887754332222 4557888999998765443
No 30
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=1.7e-07 Score=93.36 Aligned_cols=192 Identities=17% Similarity=0.128 Sum_probs=110.5
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCCC--CCCeEEEEEeCCcCCHHHHHHHHHHh
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTPN--YFDIVIWVVVSKDMQLERIQQKIGER 230 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~--~f~~~~wv~vs~~~~~~~i~~~i~~~ 230 (397)
.++||.+..++.|.+++..+++. .+.++|+.|+||||+|+.+.+....... ... .. +..+..-.....|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~~----~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-IT----AQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-CC----CCCCcccHHHHHHHcC
Confidence 35899999999999999887654 5689999999999999999887621000 000 00 0000000111111100
Q ss_pred -------hCcccCCCHHHHHHHHHHH----hcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcE-EEEEcCChhhhh
Q 041476 231 -------IGWLQNRSFEEKASGIFNL----LSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASK-IVFTTRLVDVCG 296 (397)
Q Consensus 231 -------l~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~-IlvTtR~~~v~~ 296 (397)
+........++..+.+... ..++.-++|||+++.. ..++.++.. +-.-..+++ |++||....+..
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKT-LEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKT-LEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHh-hccCCCCceEEEEeCChHhhhh
Confidence 0000111222222222221 1356679999999753 456665444 322223444 555665555542
Q ss_pred h-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 297 L-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 297 ~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
. .+-...+.++.++.++..+.+.+.+...... ...+..+.|++.++|.|.-...+
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 2345689999999999999988876433211 12345688999999998655443
No 31
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.79 E-value=3.4e-07 Score=86.22 Aligned_cols=181 Identities=12% Similarity=0.124 Sum_probs=106.7
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe--CCcCCHHHHHHHHHHhh
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVV--SKDMQLERIQQKIGERI 231 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~v--s~~~~~~~i~~~i~~~l 231 (397)
.+++|++..++.+..++..+..+.+.|+|++|+||||+++.+++... ...+. ..++.+ +.......+ .+.+..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~-~~~i~~~~~~~~~~~~~-~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWR-ENFLELNASDERGIDVI-RNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccc-cceEEeccccccchHHH-HHHHHHH
Confidence 35799999999999999877777789999999999999999998862 11221 122222 222221111 1111111
Q ss_pred CcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCCh-hhhh-hhccCceeecC
Q 041476 232 GWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLV-DVCG-LMEAQKTFKVE 307 (397)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~-~v~~-~~~~~~~~~l~ 307 (397)
.... ......+-+|++|+++.. .....+... +......+.+|+++... .... .......+++.
T Consensus 93 ~~~~------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~-le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 93 ARTA------------PVGGAPFKIIFLDEADNLTSDAQQALRRT-MEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFS 159 (319)
T ss_pred HhcC------------CCCCCCceEEEEeCcccCCHHHHHHHHHH-HhcCCCCCeEEEEeCCccccchhHHHHhheeeeC
Confidence 0000 000123568999998643 223333322 22223345677666432 2211 11234478999
Q ss_pred CCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 308 CLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 308 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
+++.++....+.+.+....... ..+..+.+++.++|.+--+...
T Consensus 160 ~l~~~ei~~~l~~~~~~~~~~i---~~~al~~l~~~~~gd~r~~~~~ 203 (319)
T PRK00440 160 PLKKEAVAERLRYIAENEGIEI---TDDALEAIYYVSEGDMRKAINA 203 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999998888775433222 2456788999999987764433
No 32
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.79 E-value=1.4e-07 Score=84.55 Aligned_cols=176 Identities=14% Similarity=0.109 Sum_probs=103.4
Q ss_pred Cccccchh-hHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLES-TFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~-~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
+.++|-+. .+..+..+......+.+.|+|++|+|||+|++.+++... ..-..+.++++.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh-------------
Confidence 34456333 334444444444557899999999999999999998872 2233456666532110
Q ss_pred cccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc---hhhhhcCCCCCC-CCCCC-cEEEEEcCChhh---------hhhh
Q 041476 233 WLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER---IDLAKMGVPFPA-SSRNA-SKIVFTTRLVDV---------CGLM 298 (397)
Q Consensus 233 ~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~-~~~~g-s~IlvTtR~~~v---------~~~~ 298 (397)
...+..+.+ .. --+|+|||+... ..|+.....++. ....| .++|+||+.... ...+
T Consensus 87 -----~~~~~~~~~----~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl 156 (235)
T PRK08084 87 -----FVPEVLEGM----EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRL 156 (235)
T ss_pred -----hhHHHHHHh----hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHH
Confidence 001111111 11 238999999642 344332111011 11123 478888886532 3444
Q ss_pred ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhh
Q 041476 299 EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAM 358 (397)
Q Consensus 299 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 358 (397)
.+..+++++++++++-.+++.+++...... -.+++.+-|++.+.|..-.+..+-..|
T Consensus 157 ~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~---l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 157 DWGQIYKLQPLSDEEKLQALQLRARLRGFE---LPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred hCCceeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 566799999999999999998866433222 235678888998887766665554433
No 33
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=1.4e-07 Score=91.52 Aligned_cols=193 Identities=13% Similarity=0.092 Sum_probs=111.0
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhh-
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERI- 231 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l- 231 (397)
..++|.+..+..|..++..++.+ .+.++|+.|+||||+|+.+++... . ..... ...+..+.+-..+...+...+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-c-e~~~~--~~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN-C-ENPIG--NEPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC-c-ccccC--ccccCCCcHHHHHHccCCccce
Confidence 35799999999999999887764 579999999999999999998862 1 11100 001111111111111110000
Q ss_pred --CcccCCCHH---HHHHHHHHH-hcCCcEEEEEecCCC--chhhhhcCCCCCCCCCCCcEEE-EEcCChhhhhh-hccC
Q 041476 232 --GWLQNRSFE---EKASGIFNL-LSKMKFLLLLDDIWE--RIDLAKMGVPFPASSRNASKIV-FTTRLVDVCGL-MEAQ 301 (397)
Q Consensus 232 --~~~~~~~~~---~~~~~l~~~-L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Il-vTtR~~~v~~~-~~~~ 301 (397)
........+ ++.+.+... ..++.-++|||++.. ...++.+... +-.......+| .||....+... ....
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKt-LEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKT-LEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHH-hhcCCCceEEEeecCChhhccHHHHhhh
Confidence 000111111 222222211 235566999999974 3556666544 32222344444 45554444322 2345
Q ss_pred ceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 302 KTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 302 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
..|.+.+++.++..+.+.+.+...... -..+....|++.++|.+--+..+
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi~---~e~eAL~~Ia~~S~Gd~RdAL~l 222 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENVQ---YDQEGLFWIAKKGDGSVRDMLSF 222 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCChHHHHHHH
Confidence 679999999999999888876543311 22456788999999998544333
No 34
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.76 E-value=6.6e-08 Score=83.88 Aligned_cols=174 Identities=18% Similarity=0.166 Sum_probs=92.5
Q ss_pred CccccchhhHHHHHHHHh-----cCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLV-----EGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
.+|+|.++-+..+.-++. ++.+..+.+|||+|+||||||+.+++.. ...|. +.+.+.-...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~-------- 89 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKA-------- 89 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SC--------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhH--------
Confidence 468999988877654443 2357789999999999999999999998 34442 2222111011
Q ss_pred HhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hh-------hhhcCCCCCCCCC-----------CCcEEEEE
Q 041476 229 ERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--ID-------LAKMGVPFPASSR-----------NASKIVFT 288 (397)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~-------~~~l~~~l~~~~~-----------~gs~IlvT 288 (397)
.+++..+.+ + +++-+|++|++... .. .++....+....+ +-+-|=.|
T Consensus 90 -----------~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 90 -----------GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp -----------HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred -----------HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 112222211 2 24568888999642 11 1111110011111 12334478
Q ss_pred cCChhhhhhhccC--ceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHh
Q 041476 289 TRLVDVCGLMEAQ--KTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRA 357 (397)
Q Consensus 289 tR~~~v~~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~ 357 (397)
||...+...+... ...+++..+.+|-.++..+.+..-..+ -.++.+.+|++.|.|-|--..-+-..
T Consensus 157 Tr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~---i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 157 TRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE---IDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp SSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E---E-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred ccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 8876664433332 345899999999999998876433322 23567899999999999655544333
No 35
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.76 E-value=3.8e-07 Score=92.10 Aligned_cols=194 Identities=20% Similarity=0.178 Sum_probs=130.4
Q ss_pred CccccchhhHHHHHHHHhcC-CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHHhh
Q 041476 154 PTIVGLESTFDKVWRCLVEG-QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGERI 231 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~-~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~~l 231 (397)
...+-|.. +++.|... +.+.+.|.-|+|.|||||+-+..... ..-..+.|.++.. +.++..+++.++..+
T Consensus 19 ~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 19 DNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred ccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 34466654 44445443 78999999999999999999998743 3445799999865 457888888888887
Q ss_pred Ccc---------------cCCCHHHHHHHHHHHhc--CCcEEEEEecCCC--chhhhhcCCCCCCCCCCCcEEEEEcCCh
Q 041476 232 GWL---------------QNRSFEEKASGIFNLLS--KMKFLLLLDDIWE--RIDLAKMGVPFPASSRNASKIVFTTRLV 292 (397)
Q Consensus 232 ~~~---------------~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IlvTtR~~ 292 (397)
+.. ...+...+...+...+. .+++++||||..- ......-...++.....+-..|+|||+.
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 632 22334445555555554 4689999999852 1222222122244555678999999987
Q ss_pred hhhhhhc---cCceeec----CCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcCC
Q 041476 293 DVCGLME---AQKTFKV----ECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSSK 361 (397)
Q Consensus 293 ~v~~~~~---~~~~~~l----~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~ 361 (397)
.-..... ....+++ -.++.+|+-.+|...... +-.+...+.+.+...|=+-|+..++=.++++
T Consensus 171 P~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL------PLDAADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred CCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC------CCChHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 6532111 1223333 357899999999876532 2224557899999999999999998887743
No 36
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.75 E-value=2.4e-08 Score=80.99 Aligned_cols=114 Identities=21% Similarity=0.218 Sum_probs=78.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccC--CCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccC--CCHHHHHHHHHHHh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHT--PNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQN--RSFEEKASGIFNLL 250 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~--~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~--~~~~~~~~~l~~~L 250 (397)
.+.+.|+|++|+|||++++.+.+..... ...-..++|+.++...+...+...|+++++.... .+..++.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4688999999999999999999886210 0013467799998888999999999999998733 46777788888888
Q ss_pred cCCc-EEEEEecCCCc---hhhhhcCCCCCCCCCCCcEEEEEcCC
Q 041476 251 SKMK-FLLLLDDIWER---IDLAKMGVPFPASSRNASKIVFTTRL 291 (397)
Q Consensus 251 ~~kr-~LlVlDdv~~~---~~~~~l~~~l~~~~~~gs~IlvTtR~ 291 (397)
...+ .+|||||++.. ..++.+... . + ..+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l-~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSL-L-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHH-T-C-SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHH-H-h-CCCCeEEEEECh
Confidence 7655 49999999653 223333222 2 2 556677776654
No 37
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.75 E-value=1.8e-07 Score=96.17 Aligned_cols=172 Identities=19% Similarity=0.276 Sum_probs=101.4
Q ss_pred ccccchhhHH---HHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhh
Q 041476 155 TIVGLESTFD---KVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERI 231 (397)
Q Consensus 155 ~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l 231 (397)
.|+|.+..+. .+...+..+..+.+.++|++|+||||||+.+++.. ..+|. .++.+. ..+.+
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~d--------- 92 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVKD--------- 92 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhHH---------
Confidence 5789888774 56666777777788999999999999999999876 33441 111110 01111
Q ss_pred CcccCCCHHHHHHHHHHHh--cCCcEEEEEecCCC--chhhhhcCCCCCCCCCCCcEEEEE--cCChh--hh-hhhccCc
Q 041476 232 GWLQNRSFEEKASGIFNLL--SKMKFLLLLDDIWE--RIDLAKMGVPFPASSRNASKIVFT--TRLVD--VC-GLMEAQK 302 (397)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IlvT--tR~~~--v~-~~~~~~~ 302 (397)
..+......+.+ .+++.+|||||++. ...++.+... . ..|+.++++ |.+.. +. ...+...
T Consensus 93 -------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~-l---E~g~IiLI~aTTenp~~~l~~aL~SR~~ 161 (725)
T PRK13341 93 -------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW-V---ENGTITLIGATTENPYFEVNKALVSRSR 161 (725)
T ss_pred -------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH-h---cCceEEEEEecCCChHhhhhhHhhcccc
Confidence 111112222222 24678999999964 3445555433 2 235555553 34332 11 1222345
Q ss_pred eeecCCCChHhHHHHHHHHhCCcc----CCCCCChHHHHHHHHHHcCCchhHHHH
Q 041476 303 TFKVECLADQDAWELFQKKVGEET----LESHPDIPELAQTVANECSGLPLALIT 353 (397)
Q Consensus 303 ~~~l~~L~~~~~~~Lf~~~~~~~~----~~~~~~~~~~~~~I~~~c~GlPLai~~ 353 (397)
.+.+++|+.++...++.+.+.... .....-..+..+.|++.+.|..-.+.-
T Consensus 162 v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln 216 (725)
T PRK13341 162 LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLN 216 (725)
T ss_pred ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHH
Confidence 799999999999999988764110 011112345678899999886544433
No 38
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=7e-07 Score=85.49 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=106.4
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
..++|.+..++.+.+.+..++. ..+.++|+.|+||||+|+.+++... ........ .+..+ ....++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~~~---pc~~c----~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGITSN---PCRKC----IICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCCCC---CCCCC----HHHHHHhcCCC
Confidence 4579999999999999887655 4678999999999999999998762 11100000 00000 01111111100
Q ss_pred cc-------cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCch--hhhhcCCCCCCCCCCCcEEEEEcCCh-hhhhh
Q 041476 233 WL-------QNRSFEEKASGIFNLL-----SKMKFLLLLDDIWERI--DLAKMGVPFPASSRNASKIVFTTRLV-DVCGL 297 (397)
Q Consensus 233 ~~-------~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~~gs~IlvTtR~~-~v~~~ 297 (397)
.. .....++ ...+.+.+ .+++-++|+|++.... .++.+... +-......++|++|.+. .+...
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~-lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKT-LEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHH-HhcCCCCeEEEEEcCChHhhhHH
Confidence 00 0011111 11222221 2345699999997543 45555444 33333456666666543 33222
Q ss_pred -hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHH
Q 041476 298 -MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALI 352 (397)
Q Consensus 298 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 352 (397)
.+....+++.+++.++..+.+.+.+...... -..+.++.|++.++|.|-.+.
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~---i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESID---TDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 2234688999999999999888866433211 124557889999999886443
No 39
>PRK09087 hypothetical protein; Validated
Probab=98.74 E-value=2.8e-07 Score=81.98 Aligned_cols=160 Identities=15% Similarity=0.090 Sum_probs=97.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKM 253 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~k 253 (397)
..+.+.|+|++|+|||+|++.+++.. . ..+++.. .+..++.. .+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~-------------------~~~~- 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAAN-------------------AAAE- 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHH-------------------hhhc-
Confidence 34679999999999999999988764 1 1133221 11111111 1111
Q ss_pred cEEEEEecCCCch-hhhhcCCCCC-CCCCCCcEEEEEcCChh---------hhhhhccCceeecCCCChHhHHHHHHHHh
Q 041476 254 KFLLLLDDIWERI-DLAKMGVPFP-ASSRNASKIVFTTRLVD---------VCGLMEAQKTFKVECLADQDAWELFQKKV 322 (397)
Q Consensus 254 r~LlVlDdv~~~~-~~~~l~~~l~-~~~~~gs~IlvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 322 (397)
-+|+|||+.... .-..+... + .....|..||+|++... ....+....++++++++.++-..++++.+
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l-~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHL-INSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHH-HHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 278889996421 11122111 1 11233677898887432 33445567799999999999999999988
Q ss_pred CCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhc------CC-CChhHHHHHHH
Q 041476 323 GEETLESHPDIPELAQTVANECSGLPLALITTGRAMS------SK-KTPEEWSYAIQ 372 (397)
Q Consensus 323 ~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~------~~-~~~~~w~~~~~ 372 (397)
....... .+++.+-|++.+.|..-++..+...|. .+ -+....+.+++
T Consensus 167 ~~~~~~l---~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~ 220 (226)
T PRK09087 167 ADRQLYV---DPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLN 220 (226)
T ss_pred HHcCCCC---CHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 5433222 356788899999988887765433331 22 35566666554
No 40
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.73 E-value=2.8e-08 Score=89.27 Aligned_cols=96 Identities=20% Similarity=0.159 Sum_probs=65.0
Q ss_pred HHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc--CCHHHHHHHHH-----HhhCcccCC-
Q 041476 167 WRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD--MQLERIQQKIG-----ERIGWLQNR- 237 (397)
Q Consensus 167 ~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~i~~~i~-----~~l~~~~~~- 237 (397)
++.+.. ..-..+.|+|++|+|||||++.+++.. . ..+|+..+|+.+... .++.++++.+. .+++.+...
T Consensus 7 id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~ 84 (249)
T cd01128 7 VDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERH 84 (249)
T ss_pred eeeecccCCCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHH
Confidence 344433 345789999999999999999999997 3 348999999997766 78999999993 333321000
Q ss_pred --CHHHHHHHHHHH-hcCCcEEEEEecCCC
Q 041476 238 --SFEEKASGIFNL-LSKMKFLLLLDDIWE 264 (397)
Q Consensus 238 --~~~~~~~~l~~~-L~~kr~LlVlDdv~~ 264 (397)
-..........+ -.+++.+|++|++..
T Consensus 85 ~~~~~~~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 85 VQVAEMVLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHH
Confidence 001111222222 247899999999953
No 41
>PRK04195 replication factor C large subunit; Provisional
Probab=98.72 E-value=6.3e-07 Score=89.12 Aligned_cols=182 Identities=18% Similarity=0.208 Sum_probs=111.1
Q ss_pred CccccchhhHHHHHHHHhcC----CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVEG----QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~----~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~ 229 (397)
..++|.+..++.+.+|+... ..+.+.|+|++|+||||+|+.+++.. . ++ .+-++.+...+.. .+..++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-~----~~-~ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-G----WE-VIELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-C----CC-EEEEcccccccHH-HHHHHHH
Confidence 35899999999999998642 26789999999999999999999987 1 22 2333444332222 2223222
Q ss_pred hhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch------hhhhcCCCCCCCCCCCcEEEEEcCChh-hh--hhhcc
Q 041476 230 RIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI------DLAKMGVPFPASSRNASKIVFTTRLVD-VC--GLMEA 300 (397)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~~gs~IlvTtR~~~-v~--~~~~~ 300 (397)
..... ......++-+||||+++... .+..+... +. ..+..||+|+.+.. .. ..-..
T Consensus 87 ~~~~~------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~-l~--~~~~~iIli~n~~~~~~~k~Lrsr 151 (482)
T PRK04195 87 EAATS------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILEL-IK--KAKQPIILTANDPYDPSLRELRNA 151 (482)
T ss_pred Hhhcc------------CcccCCCCeEEEEecCcccccccchhHHHHHHHH-HH--cCCCCEEEeccCccccchhhHhcc
Confidence 21110 00111367899999997532 23334332 22 22344666654332 21 11123
Q ss_pred CceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcC
Q 041476 301 QKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSS 360 (397)
Q Consensus 301 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~ 360 (397)
...+++.+++.++....+.+.+.......+ .+..+.|++.|+|-.-.+......+..
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~ 208 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAE 208 (482)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 567899999999999988887754332222 456788999999977666554444433
No 42
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.71 E-value=9e-07 Score=87.42 Aligned_cols=190 Identities=14% Similarity=0.127 Sum_probs=110.4
Q ss_pred ccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCcCCHHHHHHHHHHh--
Q 041476 155 TIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFD-IVIWVVVSKDMQLERIQQKIGER-- 230 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~i~~~i~~~-- 230 (397)
+++|.+..+..|...+..++. +.+.++|+.|+||||+|+.+++.... ..... ...+..+..+ .....+...
T Consensus 22 dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc-~~~~~~~~~~~~C~~C----~~C~~i~~~~h 96 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC-SALITENTTIKTCEQC----TNCISFNNHNH 96 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-ccccccCcCcCCCCCC----hHHHHHhcCCC
Confidence 579999999999888877654 57889999999999999999988621 11100 0000011111 011111110
Q ss_pred -----hCcccCCCHHHHHHHHHHH----hcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEE-EEcCChhhhhhh
Q 041476 231 -----IGWLQNRSFEEKASGIFNL----LSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIV-FTTRLVDVCGLM 298 (397)
Q Consensus 231 -----l~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Il-vTtR~~~v~~~~ 298 (397)
+........++....+... +.+++-++|+|+++.. ..++.+... +......+.+| .||+...+...+
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~-LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKT-LEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHH-HhhcCCCEEEEEEeCChHHhhHHH
Confidence 0000111222222222111 2356779999999853 456666544 33333455555 455555554333
Q ss_pred -ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHH
Q 041476 299 -EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALIT 353 (397)
Q Consensus 299 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 353 (397)
.....+++.+++.++....+.+.+....... ..+....|++.++|.+--+..
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 3346789999999999999998885433211 234567899999997755433
No 43
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=4.7e-07 Score=90.52 Aligned_cols=188 Identities=14% Similarity=0.094 Sum_probs=108.5
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
..++|.+.....|.+++..++. ..+.++|+.|+||||+|+.+++.... .. ++.. ..+..-...+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC-~~------~~~~-~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC-ET------GVTS-TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-Cc------CCCC-CCCccCHHHHHHhcCCC
Confidence 3579999999999999987764 57799999999999999999887621 11 0000 00000011111111000
Q ss_pred cc-------cCCCHHHHHHHHHH----HhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCCh-hhh-hh
Q 041476 233 WL-------QNRSFEEKASGIFN----LLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLV-DVC-GL 297 (397)
Q Consensus 233 ~~-------~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~-~v~-~~ 297 (397)
.. .....++..+.+.. -..++.-++|||++... ...+.+... +-....+.++|++|.+. .+. ..
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKt-LEEPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKT-LEEPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHH-HhcCCCCcEEEEEECChHhhhHHH
Confidence 00 01112222111111 12356679999999753 345555433 32223456677666543 332 22
Q ss_pred hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHH
Q 041476 298 MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALIT 353 (397)
Q Consensus 298 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 353 (397)
.+....+++++++.++....+.+.+...... -..+....|++.++|.+-.+..
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI~---id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQIA---ADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2445689999999999999998877543322 2244568899999997754443
No 44
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.69 E-value=4.7e-08 Score=84.24 Aligned_cols=44 Identities=30% Similarity=0.430 Sum_probs=32.6
Q ss_pred cccchhhHHHHHHHHh---cCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 156 IVGLESTFDKVWRCLV---EGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 156 ~vGr~~~~~~l~~~L~---~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|+||+.+++++...|. ....+.+.|+|++|+|||+|.+.++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999993 2467899999999999999999999988
No 45
>PTZ00202 tuzin; Provisional
Probab=98.69 E-value=4e-07 Score=86.22 Aligned_cols=159 Identities=17% Similarity=0.105 Sum_probs=103.7
Q ss_pred CCccccchhhHHHHHHHHhcC---CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 041476 153 QPTIVGLESTFDKVWRCLVEG---QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~ 229 (397)
.+.|+||+.++..+...|.+. ..+++.|+|++|+|||||++.+.... . + ..++++.. +..+++..|+.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~----~-~qL~vNpr---g~eElLr~LL~ 331 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G----M-PAVFVDVR---GTEDTLRSVVK 331 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C----c-eEEEECCC---CHHHHHHHHHH
Confidence 468999999999999988642 34689999999999999999999776 1 1 12223222 67999999999
Q ss_pred hhCcccCCCHHHHHHHHHHHh-----c-CCcEEEEEecCC--Cc-hhhhhcCCCCCCCCCCCcEEEEEcCChhhhh---h
Q 041476 230 RIGWLQNRSFEEKASGIFNLL-----S-KMKFLLLLDDIW--ER-IDLAKMGVPFPASSRNASKIVFTTRLVDVCG---L 297 (397)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVlDdv~--~~-~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~---~ 297 (397)
+|+........++...|.+.+ . +++.+|||-==. +. ..+++.. . +.+...-|.|++---.+.... .
T Consensus 332 ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~-la~drr~ch~v~evpleslt~~~~~ 409 (550)
T PTZ00202 332 ALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-A-LACDRRLCHVVIEVPLESLTIANTL 409 (550)
T ss_pred HcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-H-HHccchhheeeeeehHhhcchhccc
Confidence 999764444455666665554 2 566677664221 11 1222221 1 334455677877554444311 1
Q ss_pred hccCceeecCCCChHhHHHHHHHHh
Q 041476 298 MEAQKTFKVECLADQDAWELFQKKV 322 (397)
Q Consensus 298 ~~~~~~~~l~~L~~~~~~~Lf~~~~ 322 (397)
++--..|.+.+++.+++...-.+..
T Consensus 410 lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 410 LPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred CccceeEecCCCCHHHHHHHHhhcc
Confidence 1223467889999999988877653
No 46
>PRK05642 DNA replication initiation factor; Validated
Probab=98.67 E-value=4.5e-07 Score=81.26 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=93.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCc
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMK 254 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr 254 (397)
...+.|+|+.|+|||.|++.+++... ..-..++|++... +... . ..+.+.+.+-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~------------~----~~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR------------G----PELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh------------h----HHHHHhhhhCC
Confidence 36789999999999999999998762 1223466666432 2111 0 11222232222
Q ss_pred EEEEEecCCC---chhhhh-cCCCCCC-CCCCCcEEEEEcCChhh---------hhhhccCceeecCCCChHhHHHHHHH
Q 041476 255 FLLLLDDIWE---RIDLAK-MGVPFPA-SSRNASKIVFTTRLVDV---------CGLMEAQKTFKVECLADQDAWELFQK 320 (397)
Q Consensus 255 ~LlVlDdv~~---~~~~~~-l~~~l~~-~~~~gs~IlvTtR~~~v---------~~~~~~~~~~~l~~L~~~~~~~Lf~~ 320 (397)
+||+||+.. ...|.. +... +. ....|..+|+|++.... ...+....++++++++.++-..++++
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l-~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHL-FNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHH-HHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 688999963 234433 2222 21 12246778888875432 22334456889999999999999996
Q ss_pred HhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhh
Q 041476 321 KVGEETLESHPDIPELAQTVANECSGLPLALITTGRAM 358 (397)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 358 (397)
++....... .+++.+-|++.+.|..-.+..+-..|
T Consensus 178 ka~~~~~~l---~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGLHL---TDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 664332222 25677888888887766655544433
No 47
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1.1e-06 Score=87.31 Aligned_cols=181 Identities=15% Similarity=0.117 Sum_probs=107.4
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEEEe
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTP------------------NYFDIVIWVVV 214 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~v 214 (397)
..++|.+..+..|...+..+.. +.+.++|+.|+||||+|+.+++...... ..|...+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 3579999999999999987655 4578999999999999999988652100 01222222322
Q ss_pred CCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEE-EEcC
Q 041476 215 SKDMQLERIQQKIGERIGWLQNRSFEEKASGIFN-LLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIV-FTTR 290 (397)
Q Consensus 215 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Il-vTtR 290 (397)
.....++++ + ++.+.+.. -..+++-++|+|++... ..++.+... +-.....+.+| +||.
T Consensus 96 as~~gvd~i-r---------------~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~-LEepp~~v~fIL~Ttd 158 (546)
T PRK14957 96 ASRTGVEET-K---------------EILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKT-LEEPPEYVKFILATTD 158 (546)
T ss_pred ccccCHHHH-H---------------HHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHH-HhcCCCCceEEEEECC
Confidence 111111111 1 11122211 12356679999999743 445555444 33323345555 5554
Q ss_pred Chhhhhh-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchh-HHHHH
Q 041476 291 LVDVCGL-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPL-ALITT 354 (397)
Q Consensus 291 ~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 354 (397)
...+... .+....+++.+++.++....+.+.+..... .-..+..+.|++.++|.+- |+..+
T Consensus 159 ~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 159 YHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred hhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444322 334578999999999988888876543221 1224456789999999664 44443
No 48
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=1.4e-06 Score=85.58 Aligned_cols=198 Identities=18% Similarity=0.154 Sum_probs=112.0
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCC-C-----------------CCeEEEEEe
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPN-Y-----------------FDIVIWVVV 214 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~-~-----------------f~~~~wv~v 214 (397)
+.++|.+.....|...+..+.. +.+.++|++|+||||+|+.+++....... . +.....+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 3589999888888888887766 45789999999999999999887621100 0 001122222
Q ss_pred CCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCC-
Q 041476 215 SKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRL- 291 (397)
Q Consensus 215 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~- 291 (397)
+......++ +.|.+.... .-..+++-++|+|+++.. ...+.+... +........+|++|.+
T Consensus 94 a~~~gid~i-R~i~~~~~~--------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~-LE~p~~~vv~Ilattn~ 157 (472)
T PRK14962 94 ASNRGIDEI-RKIRDAVGY--------------RPMEGKYKVYIIDEVHMLTKEAFNALLKT-LEEPPSHVVFVLATTNL 157 (472)
T ss_pred cccCCHHHH-HHHHHHHhh--------------ChhcCCeEEEEEEChHHhHHHHHHHHHHH-HHhCCCcEEEEEEeCCh
Confidence 111111111 111111100 012345679999999643 334444433 3222233444444433
Q ss_pred hhhhhh-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCC-chhHHHHHHHhhcC---CCChhH
Q 041476 292 VDVCGL-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSG-LPLALITTGRAMSS---KKTPEE 366 (397)
Q Consensus 292 ~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~~~~~L~~---~~~~~~ 366 (397)
..+... ......+++.+++.++....+.+.+....... ..+....|++.++| ++.++..+-.+... +-+.+.
T Consensus 158 ~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i---~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~ 234 (472)
T PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI---DREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLET 234 (472)
T ss_pred HhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 333322 23446889999999999998888774332122 24557888888865 56777776554322 135555
Q ss_pred HHHH
Q 041476 367 WSYA 370 (397)
Q Consensus 367 w~~~ 370 (397)
...+
T Consensus 235 V~~~ 238 (472)
T PRK14962 235 VHEA 238 (472)
T ss_pred HHHH
Confidence 5443
No 49
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.63 E-value=7.5e-07 Score=79.62 Aligned_cols=169 Identities=11% Similarity=0.064 Sum_probs=96.1
Q ss_pred ccchhhH-HHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc
Q 041476 157 VGLESTF-DKVWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL 234 (397)
Q Consensus 157 vGr~~~~-~~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 234 (397)
.|.+... ..+.++... ...+.+.|+|+.|+|||+||+.+++.... .. ....+++..... ..+
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~--~~-~~~~~i~~~~~~------~~~------- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY--GG-RNARYLDAASPL------LAF------- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEehHHhH------HHH-------
Confidence 3554444 333333332 34568899999999999999999988621 11 233444433211 000
Q ss_pred cCCCHHHHHHHHHHHhcCCcEEEEEecCCCch--hhhhcCCCCCCC-CCCCc-EEEEEcCChhhhh--------hhccCc
Q 041476 235 QNRSFEEKASGIFNLLSKMKFLLLLDDIWERI--DLAKMGVPFPAS-SRNAS-KIVFTTRLVDVCG--------LMEAQK 302 (397)
Q Consensus 235 ~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~-~~~gs-~IlvTtR~~~v~~--------~~~~~~ 302 (397)
... ...-+||+||+.... ....+... +.. ...+. .+|+|++...... .+....
T Consensus 86 -------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~-~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~ 150 (227)
T PRK08903 86 -------------DFD-PEAELYAVDDVERLDDAQQIALFNL-FNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGL 150 (227)
T ss_pred -------------hhc-ccCCEEEEeChhhcCchHHHHHHHH-HHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCe
Confidence 111 234479999996432 21222222 211 11233 4667766533211 223346
Q ss_pred eeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhc
Q 041476 303 TFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMS 359 (397)
Q Consensus 303 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~ 359 (397)
.+++.+|++++-..++.+.+...... -.++..+.+++.+.|.|..+..+...|.
T Consensus 151 ~i~l~pl~~~~~~~~l~~~~~~~~v~---l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 151 VYELKPLSDADKIAALKAAAAERGLQ---LADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 88999999988777777654322211 2345678888899999998877766653
No 50
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=1.1e-06 Score=88.76 Aligned_cols=189 Identities=15% Similarity=0.133 Sum_probs=108.0
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhh-
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERI- 231 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l- 231 (397)
..++|.+..+..|.+.+..+.+. .+.++|+.|+||||+|+.+++..... ..+. +..+..-.....|...-
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~-~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE-TGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc-cCCC-------CCCCCCCHHHHHHHcCCC
Confidence 35899999999999999887664 46899999999999999998876211 0000 00000111222221110
Q ss_pred ------CcccCCCHHHHH---HHHHH-HhcCCcEEEEEecCCC--chhhhhcCCCCCCCCCCCcEEE-EEcCChhhhh-h
Q 041476 232 ------GWLQNRSFEEKA---SGIFN-LLSKMKFLLLLDDIWE--RIDLAKMGVPFPASSRNASKIV-FTTRLVDVCG-L 297 (397)
Q Consensus 232 ------~~~~~~~~~~~~---~~l~~-~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Il-vTtR~~~v~~-~ 297 (397)
........++.. +.+.. -..++.-++|||+++. ....+.+... +-......++| +||....+.. .
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKt-LEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT-LEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHH-HHcCCCCeEEEEecCCccccchHH
Confidence 000011122221 11111 1245667999999974 3445555433 22222344455 4554444432 2
Q ss_pred hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 298 MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 298 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
.+-...|++++|+.++....+.+.+..... ....+....|++.++|.|--+..+
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 234568999999999999999887633221 122455688999999977644433
No 51
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.63 E-value=2.7e-06 Score=81.35 Aligned_cols=182 Identities=12% Similarity=0.162 Sum_probs=108.3
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccC-C------------------CCCCeEEEEE
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHT-P------------------NYFDIVIWVV 213 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~-~------------------~~f~~~~wv~ 213 (397)
..++|.+..++.+.+++..+.. +.+.++|++|+||||+|+.+....... . .+++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 3579999999999999987654 467899999999999999998775211 0 12222 2222
Q ss_pred eCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCC
Q 041476 214 VSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRL 291 (397)
Q Consensus 214 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~ 291 (397)
.+......+ .+++...+.. .-+.+++-++|+|++... ...+.+... +......+.+|++|.+
T Consensus 93 ~~~~~~~~~-~~~l~~~~~~--------------~p~~~~~~vviidea~~l~~~~~~~Ll~~-le~~~~~~~lIl~~~~ 156 (355)
T TIGR02397 93 AASNNGVDD-IREILDNVKY--------------APSSGKYKVYIIDEVHMLSKSAFNALLKT-LEEPPEHVVFILATTE 156 (355)
T ss_pred ccccCCHHH-HHHHHHHHhc--------------CcccCCceEEEEeChhhcCHHHHHHHHHH-HhCCccceeEEEEeCC
Confidence 221111111 1112211110 001244558999998643 334454433 3222345666666654
Q ss_pred hh-hhh-hhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 292 VD-VCG-LMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 292 ~~-v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
.. +.. .......+++.++++++....+...+....... ..+.+..+++.++|.|..+....
T Consensus 157 ~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 157 PHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI---EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred HHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCChHHHHHHH
Confidence 43 222 222345788999999999998888764333112 24567889999999987665444
No 52
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=1.7e-06 Score=83.09 Aligned_cols=170 Identities=12% Similarity=0.059 Sum_probs=100.8
Q ss_pred CccccchhhHHHHHHHHhcCC----------ceEEEEEcCCCCcHHHHHHHHHhhhccCC------------------CC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQ----------FGIIGLYGMGGVGKTTLLAQINNKFLHTP------------------NY 205 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~~GvGKTtLa~~v~~~~~~~~------------------~~ 205 (397)
+.++|.+..++.|.+++..+. .+-+.++|++|+|||++|+.++....... .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 357899999999999987753 45688999999999999999987652110 11
Q ss_pred CCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--hhhhhcCCCCCCC
Q 041476 206 FDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLL-----SKMKFLLLLDDIWER--IDLAKMGVPFPAS 278 (397)
Q Consensus 206 f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~ 278 (397)
.|. .++.... .....++.. .+.+.+ .+++-++|+|+++.. ...+.+... +-.
T Consensus 85 pD~-~~i~~~~------------------~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~-LEe 143 (394)
T PRK07940 85 PDV-RVVAPEG------------------LSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA-VEE 143 (394)
T ss_pred CCE-EEecccc------------------ccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH-hhc
Confidence 111 1111110 011112211 222222 245568999999753 333444333 222
Q ss_pred CCCCcEEEEEcCC-hhhhhh-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHH
Q 041476 279 SRNASKIVFTTRL-VDVCGL-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALI 352 (397)
Q Consensus 279 ~~~gs~IlvTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 352 (397)
...++.+|++|.+ ..+... .+....+.+.+++.++....+.+..+ . ..+.+..++..++|.|....
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~---~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----V---DPETARRAARASQGHIGRAR 211 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHH
Confidence 2234555555544 344322 23356899999999999988875431 1 13447889999999997543
No 53
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.60 E-value=2.9e-06 Score=73.50 Aligned_cols=160 Identities=14% Similarity=0.160 Sum_probs=92.1
Q ss_pred HHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC-------------------CCCCeEEEEEeC-CcCCHHHH
Q 041476 165 KVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTP-------------------NYFDIVIWVVVS-KDMQLERI 223 (397)
Q Consensus 165 ~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~vs-~~~~~~~i 223 (397)
.+.+.+..++. ..+.++|+.|+||||+|+.+........ .+.+. .++... .....+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~- 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ- 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-
Confidence 45566666655 5789999999999999999988862110 12222 122111 1111111
Q ss_pred HHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCCh-hhhhhh-c
Q 041476 224 QQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLV-DVCGLM-E 299 (397)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~-~v~~~~-~ 299 (397)
.+++.+.+... -..+.+-++|+||+... ...+.+... +......+.+|++|++. .+...+ .
T Consensus 81 i~~i~~~~~~~--------------~~~~~~kviiide~~~l~~~~~~~Ll~~-le~~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 81 VRELVEFLSRT--------------PQESGRRVVIIEDAERMNEAAANALLKT-LEEPPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred HHHHHHHHccC--------------cccCCeEEEEEechhhhCHHHHHHHHHH-hcCCCCCeEEEEEECChHhChHHHHh
Confidence 11122211100 01245668999999653 344555444 33333345666666543 222211 2
Q ss_pred cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhH
Q 041476 300 AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLA 350 (397)
Q Consensus 300 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 350 (397)
....+++.+++.++..+.+.+. + . ..+.+..|++.++|.|..
T Consensus 146 r~~~~~~~~~~~~~~~~~l~~~-g-----i---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 146 RCQVLPFPPLSEEALLQWLIRQ-G-----I---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred hcEEeeCCCCCHHHHHHHHHHc-C-----C---CHHHHHHHHHHcCCCccc
Confidence 3458999999999998888776 1 1 135588999999998853
No 54
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=2.4e-06 Score=83.84 Aligned_cols=181 Identities=16% Similarity=0.145 Sum_probs=107.9
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEEEe
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTP------------------NYFDIVIWVVV 214 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~v 214 (397)
.+++|.+..+..|.+.+..+..+ .+.++|+.|+||||+|+.++...-... ..+.-++.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 35799999999999988877665 789999999999999999987541000 01112233333
Q ss_pred CCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEc-CC
Q 041476 215 SKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTT-RL 291 (397)
Q Consensus 215 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTt-R~ 291 (397)
+....++++ +++.+.... .-+.++.-++|+|++... ..++.+... +-...+.+++|++| ..
T Consensus 93 as~~~vddI-R~Iie~~~~--------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~-LEePp~~v~fIlatte~ 156 (491)
T PRK14964 93 ASNTSVDDI-KVILENSCY--------------LPISSKFKVYIIDEVHMLSNSAFNALLKT-LEEPAPHVKFILATTEV 156 (491)
T ss_pred ccCCCHHHH-HHHHHHHHh--------------ccccCCceEEEEeChHhCCHHHHHHHHHH-HhCCCCCeEEEEEeCCh
Confidence 222222221 111111100 001245669999999643 345555433 32223456565544 44
Q ss_pred hhhhhh-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHH
Q 041476 292 VDVCGL-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALIT 353 (397)
Q Consensus 292 ~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 353 (397)
..+... .+....+++.+++.++....+.+.+....... ..+..+.|++.++|.+-.+..
T Consensus 157 ~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i---~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 157 KKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH---DEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 444332 23456899999999999999988775433222 244567899999988764433
No 55
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=2.8e-07 Score=87.63 Aligned_cols=189 Identities=13% Similarity=0.095 Sum_probs=108.6
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCCC-CCCe-E---EEEEeCCcCCHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTPN-YFDI-V---IWVVVSKDMQLERIQQKI 227 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~-~f~~-~---~wv~vs~~~~~~~i~~~i 227 (397)
..++|.+.....|.+.+..+..+ .+.++|+.|+||+|+|..+......... .... . .-..+... -...+.|
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~---c~~c~~i 95 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD---HPVARRI 95 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC---ChHHHHH
Confidence 46899999999999999887655 5889999999999999988887631110 0000 0 00000000 0111112
Q ss_pred HHhhCcc----------------cCCCHHHHHHHHHHHhc-----CCcEEEEEecCCC--chhhhhcCCCCCCCCCCCcE
Q 041476 228 GERIGWL----------------QNRSFEEKASGIFNLLS-----KMKFLLLLDDIWE--RIDLAKMGVPFPASSRNASK 284 (397)
Q Consensus 228 ~~~l~~~----------------~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~ 284 (397)
...-... .....++ +..+.+.+. +.+-++||||++. ....+.+... +-....++.
T Consensus 96 ~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~-LEepp~~~~ 173 (365)
T PRK07471 96 AAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKV-LEEPPARSL 173 (365)
T ss_pred HccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHH-HhcCCCCeE
Confidence 1111100 0111222 333444443 4567999999964 3444444333 222223455
Q ss_pred EEEEcCChh-hhhh-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 285 IVFTTRLVD-VCGL-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 285 IlvTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
+|++|.+.. +... .+....+.+.+++.++..+++.+..... . .+....+++.++|.|+....+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~------~-~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL------P-DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC------C-HHHHHHHHHHcCCCHHHHHHH
Confidence 666665543 3222 2345689999999999999998764211 1 122367899999999866444
No 56
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=2.1e-06 Score=86.60 Aligned_cols=193 Identities=15% Similarity=0.150 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC-CCCCeEEEEEeCCcCCHHHHHHHHHHh-
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTP-NYFDIVIWVVVSKDMQLERIQQKIGER- 230 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~~~~~i~~~i~~~- 230 (397)
++++|.+..+..|.+++..++. ..+.++|+.|+||||+|+.+.+...... ........-.+ ..-.....|...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC----g~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC----GVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC----CccHHHHHHHcCC
Confidence 3579999999999999988766 4668999999999999999977752100 00000000001 111112222110
Q ss_pred ------hCcccCCCHHHHHHHHHHH----hcCCcEEEEEecCCC--chhhhhcCCCCCCCCCCCcEEEE-EcCChhhh-h
Q 041476 231 ------IGWLQNRSFEEKASGIFNL----LSKMKFLLLLDDIWE--RIDLAKMGVPFPASSRNASKIVF-TTRLVDVC-G 296 (397)
Q Consensus 231 ------l~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Ilv-TtR~~~v~-~ 296 (397)
+........++..+.+... ..++.-++|||+++. ...++.+... +-.....+++|+ ||....+. .
T Consensus 92 h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKt-LEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKT-LEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHh-cccCCCCeEEEEEECCchhhhHH
Confidence 0000111222222222111 123455899999974 3456665544 333233455554 44444443 2
Q ss_pred hhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 297 LMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 297 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
..+....+++++++.++....+.+.+....... ..+..+.|++.++|.+--+..+
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i---e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA---EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 233457899999999999999988775433221 2455788999999977555443
No 57
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=1.4e-06 Score=87.94 Aligned_cols=178 Identities=15% Similarity=0.155 Sum_probs=106.6
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCC-------------------CCeEEEEE
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPNY-------------------FDIVIWVV 213 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 213 (397)
..++|.+..+..|.+++..++. ..+.++|+.|+||||+|+.+..... .... |...+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 3589999999999999988765 4679999999999999999988751 1110 10111222
Q ss_pred eCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHH----HhcCCcEEEEEecCCCch--hhhhcCCCCCCCCCCCcEEEE
Q 041476 214 VSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFN----LLSKMKFLLLLDDIWERI--DLAKMGVPFPASSRNASKIVF 287 (397)
Q Consensus 214 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~~gs~Ilv 287 (397)
.+... ..+...+.+.. -..+++-++|||++.... ..+.+... +-.....+++|+
T Consensus 95 aAs~~-------------------gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKt-LEEPp~~v~fIL 154 (709)
T PRK08691 95 AASNT-------------------GIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKT-LEEPPEHVKFIL 154 (709)
T ss_pred ccccC-------------------CHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHH-HHhCCCCcEEEE
Confidence 11111 11111111111 023566799999997532 24444333 222223456665
Q ss_pred EcCC-hhhhh-hhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 288 TTRL-VDVCG-LMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 288 TtR~-~~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
+|.+ ..+.. ..+....+.+.+++.++....+.+.+....... ..+....|++.++|.+.-+..+.
T Consensus 155 aTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 155 ATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred EeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHHHHH
Confidence 5543 33321 123345788999999999999988775433222 24557899999999886554443
No 58
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.7e-06 Score=83.77 Aligned_cols=194 Identities=13% Similarity=0.105 Sum_probs=108.3
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE-eCCcCCHHHHHHHHHHhh
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVV-VSKDMQLERIQQKIGERI 231 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~i~~~i~~~l 231 (397)
..++|.+..++.|..++.++..+ .+.++|+.|+||||+|+.+++... ....+....|.. ....+..-.....+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 35799999999999999877665 488999999999999999988772 111111111110 000000001111111110
Q ss_pred Ccc-------cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEc-CChhhhh
Q 041476 232 GWL-------QNRSFEEKASGIFNLL-----SKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTT-RLVDVCG 296 (397)
Q Consensus 232 ~~~-------~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTt-R~~~v~~ 296 (397)
... .....++.. .+.+.+ .+++-++|+|++... ..++.+... +....+.+.+|++| +...+..
T Consensus 95 ~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~-LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKT-LEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHH-HhcCCCCeEEEEEeCChHHhHH
Confidence 000 011122222 222333 245568999999753 355555444 33333455655544 4444432
Q ss_pred hh-ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHH
Q 041476 297 LM-EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALIT 353 (397)
Q Consensus 297 ~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 353 (397)
.+ .....+++.++++++....+...+...... -..+.++.|++.++|.+--+..
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~---i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS---VDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 22 234578999999999988888776432211 2245678999999997754443
No 59
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.59 E-value=1.9e-07 Score=89.55 Aligned_cols=171 Identities=20% Similarity=0.235 Sum_probs=99.9
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCH
Q 041476 154 PTIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQL 220 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 220 (397)
.++.|++..+++|.+.+.- ..++.+.|+|++|+|||++|+.+++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 4679999999999887642 124568999999999999999999987 2333 22211
Q ss_pred HHHHHHHHHhhCcccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCch----------------hhhhcCCCCC-CCCCCC
Q 041476 221 ERIQQKIGERIGWLQNRSFEEKASGIFNLL-SKMKFLLLLDDIWERI----------------DLAKMGVPFP-ASSRNA 282 (397)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~----------------~~~~l~~~l~-~~~~~g 282 (397)
.++.... ++ ........+.+.. ...+.+|+|||++... .+..+...+- .....+
T Consensus 190 ~~l~~~~---~g-----~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 190 SELVRKY---IG-----EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHHHh---hh-----HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 1111110 00 1111222222222 3467899999986421 1111211100 112346
Q ss_pred cEEEEEcCChhhh-----hhhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch
Q 041476 283 SKIVFTTRLVDVC-----GLMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP 348 (397)
Q Consensus 283 s~IlvTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (397)
..||.||...... ........+.+...+.++..++|+.++.......+.. ...+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 7788888754331 1112345789999999999999998875443222112 467778888765
No 60
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.7e-06 Score=85.95 Aligned_cols=182 Identities=14% Similarity=0.112 Sum_probs=106.6
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEEEe
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTP------------------NYFDIVIWVVV 214 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~v 214 (397)
.++||.+..+..|.+++..+..+ .+.++|+.|+||||+|+.+.+...... +.|.-++.+..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 35799999999999999887665 468999999999999999988762100 01111222222
Q ss_pred CCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCC--chhhhhcCCCCCCCCCCCcEEEEEc-CC
Q 041476 215 SKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWE--RIDLAKMGVPFPASSRNASKIVFTT-RL 291 (397)
Q Consensus 215 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IlvTt-R~ 291 (397)
+....++++ +++.+.+.. .-..++.-++|||+++. ....+.+... +-.....+++|++| ..
T Consensus 96 as~~~v~~i-R~l~~~~~~--------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~-LEepp~~~~fIlattd~ 159 (509)
T PRK14958 96 ASRTKVEDT-RELLDNIPY--------------APTKGRFKVYLIDEVHMLSGHSFNALLKT-LEEPPSHVKFILATTDH 159 (509)
T ss_pred cccCCHHHH-HHHHHHHhh--------------ccccCCcEEEEEEChHhcCHHHHHHHHHH-HhccCCCeEEEEEECCh
Confidence 222222221 112111110 01135566999999974 3445554433 32223346565544 43
Q ss_pred hhhhhh-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 292 VDVCGL-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 292 ~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
..+... .+....+++++++.++....+.+.+....... ..+....|++.++|.|--+..+
T Consensus 160 ~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 160 HKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred HhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 343322 23346789999999998887777664332111 2344678999999988655443
No 61
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=2.5e-06 Score=80.77 Aligned_cols=192 Identities=13% Similarity=0.088 Sum_probs=111.4
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCC-CCCeEEEEEeCCcCCHHHHHHHHHHhh
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPN-YFDIVIWVVVSKDMQLERIQQKIGERI 231 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~~~~~i~~~i~~~l 231 (397)
+.++|.+.....+...+..+.. ..+.|+|+.|+||||+|..+......... .+... .....+.-....+.+...-
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 4689999999999999988764 46899999999999999999888732100 01111 0011111111233332221
Q ss_pred Cc-------c---------cCCCHHHHHHHHHHHhc-----CCcEEEEEecCCCc--hhhhhcCCCCCCCC-CCCcEEEE
Q 041476 232 GW-------L---------QNRSFEEKASGIFNLLS-----KMKFLLLLDDIWER--IDLAKMGVPFPASS-RNASKIVF 287 (397)
Q Consensus 232 ~~-------~---------~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~--~~~~~l~~~l~~~~-~~gs~Ilv 287 (397)
.. + .....++ +..+.+++. +++-++|+|+++.. ...+.+... +-.. ....-|++
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~-LEEpp~~~~fiLi 177 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKT-LEEPPARALFILI 177 (351)
T ss_pred CCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHH-HhcCCCCceEEEE
Confidence 10 0 0112233 234444443 46679999999743 334444332 2111 22334555
Q ss_pred EcCChhhhhhh-ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 288 TTRLVDVCGLM-EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 288 TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
|++...+...+ +....+++.+++.++...++.+.... .+ -..+....|++.++|.|.....+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~----~~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS----QG-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc----cC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55544443222 23468999999999999999874321 11 224457889999999998765443
No 62
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=2e-06 Score=85.83 Aligned_cols=190 Identities=13% Similarity=0.109 Sum_probs=106.1
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
..++|++..+..+.+++..+.. +.+.++|+.|+||||+|+.+++.... .. |.... .+..-...+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C-~~------~~~~~-~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC-LN------PKDGD-CCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-CC------CCCCC-CCcccHHHHHHHcCCC
Confidence 3579999999999999877654 46889999999999999999887621 11 11100 0011111111111110
Q ss_pred cc-------cCCCHHHHHHHHHHH-----hcCCcEEEEEecCCC--chhhhhcCCCCCCCCCCCcEEEE-EcCChhhhh-
Q 041476 233 WL-------QNRSFEEKASGIFNL-----LSKMKFLLLLDDIWE--RIDLAKMGVPFPASSRNASKIVF-TTRLVDVCG- 296 (397)
Q Consensus 233 ~~-------~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Ilv-TtR~~~v~~- 296 (397)
.. .....++.. .+.+. ..+++-++|+|+++. ...++.+... +-.....+.+|+ |+....+..
T Consensus 88 ~DiieIdaas~igVd~IR-eIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKt-LEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 88 VDIVELDAASNNGVDEIR-NIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKT-LEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CceEEeccccccCHHHHH-HHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHH-HHhCCCcEEEEEECCChHhhhHH
Confidence 00 001111111 11111 123444799999964 3445555433 222223455554 444434432
Q ss_pred hhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchh-HHHHHHH
Q 041476 297 LMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPL-ALITTGR 356 (397)
Q Consensus 297 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~~ 356 (397)
..+....+++.+++.++....+.+.+....... ..+.+..+++.++|.|- |+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I---s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKI---EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 223456899999999999998888764332112 23457889999999664 4444433
No 63
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=3.5e-06 Score=87.93 Aligned_cols=184 Identities=11% Similarity=0.071 Sum_probs=105.6
Q ss_pred ccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHh---
Q 041476 155 TIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGER--- 230 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~--- 230 (397)
.++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+.+..... ...... .+..+. ....|...
T Consensus 16 eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~-~~~~~~---pCg~C~----sC~~~~~g~~~ 87 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV-EGPTST---PCGECD----SCVALAPGGPG 87 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc-cCCCCC---CCcccH----HHHHHHcCCCC
Confidence 5799999999999999887665 57899999999999999998887211 110000 000000 01111100
Q ss_pred ------hCcccCCCHHHHHHHHHHH-----hcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEE-EEcCChhhhh
Q 041476 231 ------IGWLQNRSFEEKASGIFNL-----LSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIV-FTTRLVDVCG 296 (397)
Q Consensus 231 ------l~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Il-vTtR~~~v~~ 296 (397)
+........++..+ +.+. ..++.-++|||+++.. ..++.|+.. +-.-...+.+| +|+....+..
T Consensus 88 ~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~-LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 88 SLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKI-VEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHH-HhCCCCCeEEEEEeCChhhhhH
Confidence 00001111222221 2211 2355668999999743 445555444 33223345555 4544444433
Q ss_pred h-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHH
Q 041476 297 L-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLAL 351 (397)
Q Consensus 297 ~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 351 (397)
. .+....|++.+++.++..+++.+.+....... ..+....|++.++|.+..+
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 2 23456899999999999988887664332111 2345678899999988443
No 64
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=6.8e-06 Score=82.46 Aligned_cols=192 Identities=14% Similarity=0.115 Sum_probs=110.1
Q ss_pred CccccchhhHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQ-FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
..++|.+..+..|.+.+..++ ...+.++|+.|+||||+|+.+.+.... ...... ..++.-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C-~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC-ETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc-cCCCCC-------CCCcccHHHHHHhcCCC
Confidence 357999988899999888765 467889999999999999999988721 110000 00010111111111100
Q ss_pred cc-------cCCCHHHHHHHHHHH-----hcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCC-hhhhhh
Q 041476 233 WL-------QNRSFEEKASGIFNL-----LSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRL-VDVCGL 297 (397)
Q Consensus 233 ~~-------~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~-~~v~~~ 297 (397)
.. .....++. +.+.+. ..+++-+||||++... ..++.+... +-.......+|++|.. ..+...
T Consensus 88 pDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~-LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 88 VDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKT-LEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHH-hhccCCCEEEEEecCChhhhhHH
Confidence 00 01111111 112222 2356679999999753 445555444 3222234555554444 444322
Q ss_pred -hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch-hHHHHHHHhh
Q 041476 298 -MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP-LALITTGRAM 358 (397)
Q Consensus 298 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~~~L 358 (397)
.+....+++.+++.++....+.+.+...... -..+.++.|++.++|.+ .|+..+..++
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2334588999999999999888876543311 22456788999999965 6777665544
No 65
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=6.5e-06 Score=79.16 Aligned_cols=179 Identities=11% Similarity=0.140 Sum_probs=103.2
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccC-----CCCCCeEE-EEEeCCcCCHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHT-----PNYFDIVI-WVVVSKDMQLERIQQK 226 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~-----~~~f~~~~-wv~vs~~~~~~~i~~~ 226 (397)
.+++|.+..++.+.+.+..+.. +.+.++|++|+||||+|+.+.+..... ...|...+ -+.......+.+ ..+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHH
Confidence 3579999999999999987654 488899999999999999998876210 11122111 111111111111 112
Q ss_pred HHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEc-CChhhhh-hhccCc
Q 041476 227 IGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTT-RLVDVCG-LMEAQK 302 (397)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTt-R~~~v~~-~~~~~~ 302 (397)
+.+++.. .-..+++-++++|++... ..++.+... +......+.+|++| ....+.. ..+...
T Consensus 96 l~~~~~~--------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~-le~~~~~~~~Il~~~~~~kl~~~l~sr~~ 160 (367)
T PRK14970 96 LIDQVRI--------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKT-LEEPPAHAIFILATTEKHKIIPTILSRCQ 160 (367)
T ss_pred HHHHHhh--------------ccccCCcEEEEEeChhhcCHHHHHHHHHH-HhCCCCceEEEEEeCCcccCCHHHHhcce
Confidence 2211110 001245568999998643 335554333 22222334555444 3333322 223345
Q ss_pred eeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHH
Q 041476 303 TFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLAL 351 (397)
Q Consensus 303 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 351 (397)
.++..++++++....+.+.+....... ..+..+.|++.++|.+-.+
T Consensus 161 ~v~~~~~~~~~l~~~l~~~~~~~g~~i---~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 161 IFDFKRITIKDIKEHLAGIAVKEGIKF---EDDALHIIAQKADGALRDA 206 (367)
T ss_pred eEecCCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 789999999999998888765433222 2456788888999866543
No 66
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.50 E-value=2e-07 Score=87.57 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=65.0
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC--CHHHHHHHHHHhhCccc-CCCHH
Q 041476 165 KVWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM--QLERIQQKIGERIGWLQ-NRSFE 240 (397)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~-~~~~~ 240 (397)
++++++.. +.-.-..|+|++|+|||||++.+|+.. . ..+|+.++||.+.+.. .+.++++.|.-.+-..+ .....
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 44555543 344678899999999999999999998 3 3489999999998887 77788888763221111 11111
Q ss_pred H-------HHHHHHHH-hcCCcEEEEEecCC
Q 041476 241 E-------KASGIFNL-LSKMKFLLLLDDIW 263 (397)
Q Consensus 241 ~-------~~~~l~~~-L~~kr~LlVlDdv~ 263 (397)
. ..+....+ -.+++.||++|++.
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 1 11111121 25799999999995
No 67
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=4.4e-06 Score=83.56 Aligned_cols=178 Identities=15% Similarity=0.125 Sum_probs=103.8
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEEEe
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTP------------------NYFDIVIWVVV 214 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~v 214 (397)
..++|.+..+..|.+++..++.+ .+.++|+.|+||||+|+.+........ +.|.-.+++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 35799999999999999887665 568999999999999999987762100 00111222221
Q ss_pred CCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEc-CC
Q 041476 215 SKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTT-RL 291 (397)
Q Consensus 215 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTt-R~ 291 (397)
+....+++ ++++...+.. .-..+++-++|+|++... ...+.+... +-.....+.+|++| ..
T Consensus 96 ~~~~~vd~-ir~l~~~~~~--------------~p~~~~~kVvIIDEad~ls~~a~naLLK~-LEepp~~~~fIL~t~d~ 159 (527)
T PRK14969 96 ASNTQVDA-MRELLDNAQY--------------APTRGRFKVYIIDEVHMLSKSAFNAMLKT-LEEPPEHVKFILATTDP 159 (527)
T ss_pred cccCCHHH-HHHHHHHHhh--------------CcccCCceEEEEcCcccCCHHHHHHHHHH-HhCCCCCEEEEEEeCCh
Confidence 11111111 1111111110 001356679999999754 334544433 22223345555544 43
Q ss_pred hhhhhh-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhH
Q 041476 292 VDVCGL-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLA 350 (397)
Q Consensus 292 ~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 350 (397)
..+... .+....+++.+++.++....+.+.+...... ...+....|++.++|.+--
T Consensus 160 ~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 160 QKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMRD 216 (527)
T ss_pred hhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 333221 2234688999999999998888776433211 1234568899999997753
No 68
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.49 E-value=1.7e-06 Score=91.04 Aligned_cols=181 Identities=15% Similarity=0.155 Sum_probs=98.7
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccC--CC-CCCeEEE-EEeCCcCCHHHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHT--PN-YFDIVIW-VVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~--~~-~f~~~~w-v~vs~~~~~~~i~~~i~~ 229 (397)
+.++||+.++.+++..|......-+.++|++|+||||+|+.++...... .. -.+..+| +..+.-..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a---------- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA---------- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc----------
Confidence 3579999999999999987766677799999999999999999886211 11 1223333 22221000
Q ss_pred hhCcccCCCHHHHHHHHHHHh--cCCcEEEEEecCCCch-------hhh--hcCCCCCCCCCCCcEEEEEcCChhhhh--
Q 041476 230 RIGWLQNRSFEEKASGIFNLL--SKMKFLLLLDDIWERI-------DLA--KMGVPFPASSRNASKIVFTTRLVDVCG-- 296 (397)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~-------~~~--~l~~~l~~~~~~gs~IlvTtR~~~v~~-- 296 (397)
+.......+.....+...+ .+++.+|++|++.... ..+ .+..+.+. ...-++|-||...+...
T Consensus 257 --g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e~~~~~ 332 (852)
T TIGR03345 257 --GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAEYKKYF 332 (852)
T ss_pred --ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHHHhhhh
Confidence 0000001111111122222 2468999999986421 111 12222122 22356666666543311
Q ss_pred -----hhccCceeecCCCChHhHHHHHHHHhCCccCCC-CCChHHHHHHHHHHcCCch
Q 041476 297 -----LMEAQKTFKVECLADQDAWELFQKKVGEETLES-HPDIPELAQTVANECSGLP 348 (397)
Q Consensus 297 -----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~-~~~~~~~~~~I~~~c~GlP 348 (397)
.......+.+++++.++..+++........... -.-..+....+++.+.+.+
T Consensus 333 ~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 333 EKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 112335899999999999999754432111000 0112444566777776543
No 69
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.48 E-value=1.6e-06 Score=77.81 Aligned_cols=181 Identities=14% Similarity=0.159 Sum_probs=111.3
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEE-EEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIW-VVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~w-v~vs~~~~~~~i~~~i~~~l~ 232 (397)
..++|.+..+.-|.+.+.....+....+||+|.|||+-|+.++... -..+.|.+++- .++|..-.+. +.
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGis-----vv---- 105 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGIS-----VV---- 105 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhccccccccc-----ch----
Confidence 4579999999999999988788999999999999999999998887 22455665442 2333322111 00
Q ss_pred cccCCCHHHHHHHHHHHhc--CCc-EEEEEecCCCc--hhhhhcCCCCCCCCCCCcE-EEEEcCChhhhhhh-ccCceee
Q 041476 233 WLQNRSFEEKASGIFNLLS--KMK-FLLLLDDIWER--IDLAKMGVPFPASSRNASK-IVFTTRLVDVCGLM-EAQKTFK 305 (397)
Q Consensus 233 ~~~~~~~~~~~~~l~~~L~--~kr-~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~-IlvTtR~~~v~~~~-~~~~~~~ 305 (397)
.....+...+......... .++ -++|||++++. ..|..+... .-.....++ |+||+.-..+...+ .....|.
T Consensus 106 r~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~-mE~~s~~trFiLIcnylsrii~pi~SRC~Kfr 184 (346)
T KOG0989|consen 106 REKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRT-MEDFSRTTRFILICNYLSRIIRPLVSRCQKFR 184 (346)
T ss_pred hhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHH-HhccccceEEEEEcCChhhCChHHHhhHHHhc
Confidence 0011111111111110010 133 38899999864 678887665 333233444 45555544443222 2345789
Q ss_pred cCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch
Q 041476 306 VECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP 348 (397)
Q Consensus 306 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (397)
.++|.+++...-++..+...+...+ .+..+.|++.++|--
T Consensus 185 Fk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 185 FKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDL 224 (346)
T ss_pred CCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcH
Confidence 9999999988888887755443333 455788999998843
No 70
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.48 E-value=1.3e-06 Score=77.47 Aligned_cols=183 Identities=18% Similarity=0.164 Sum_probs=99.4
Q ss_pred Cccccc-hhhHHHHHHHHhcC---CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 041476 154 PTIVGL-ESTFDKVWRCLVEG---QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 154 ~~~vGr-~~~~~~l~~~L~~~---~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~ 229 (397)
+.++|- .+..-.....+.++ ....+.|+|+.|+|||.|.+.+++...+ ...-..+++++ ..++...+..
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEE------HHHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeec------HHHHHHHHHH
Confidence 344564 33333344444332 3457899999999999999999998732 11122455554 3455555555
Q ss_pred hhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc---hhhhhcCCCCCC-CCCCCcEEEEEcCChhh---------hh
Q 041476 230 RIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER---IDLAKMGVPFPA-SSRNASKIVFTTRLVDV---------CG 296 (397)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~-~~~~gs~IlvTtR~~~v---------~~ 296 (397)
.+.. ... ..+.+.++ .-=+|+|||++.. ..|......++. ....|.+||+|+..... ..
T Consensus 82 ~~~~---~~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S 153 (219)
T PF00308_consen 82 ALRD---GEI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS 153 (219)
T ss_dssp HHHT---TSH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH
T ss_pred HHHc---ccc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh
Confidence 4432 111 22333344 2348899999742 223221111011 11246789999965432 33
Q ss_pred hhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 297 LMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 297 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
.+...-.+++++++.++...++.+.+...... -.+++.+-|++.+.+..-.+.-+
T Consensus 154 Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 154 RLSWGLVVELQPPDDEDRRRILQKKAKERGIE---LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHCSEEEEE----HHHHHHHHHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHHHH
Confidence 44566789999999999999999988544322 23556777777776555444433
No 71
>PF14516 AAA_35: AAA-like domain
Probab=98.48 E-value=2.6e-05 Score=73.62 Aligned_cols=197 Identities=12% Similarity=0.086 Sum_probs=117.4
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-----CCHHHHHHHH-
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD-----MQLERIQQKI- 227 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-----~~~~~i~~~i- 227 (397)
+..|.|...-+++.+.+.+. -..+.|.|+-.+|||+|...+.+... +.. ..++++++..- .+....++.+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~--~~~-~~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQ--QQG-YRCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHH--HCC-CEEEEEEeecCCCcccCCHHHHHHHHH
Confidence 44578886667777777642 46899999999999999999998872 223 34557776542 2455555444
Q ss_pred ---HHhhCccc---------CCCHHHHHHHHHHHh-c--CCcEEEEEecCCCchh-------hhhcCCCCC------CCC
Q 041476 228 ---GERIGWLQ---------NRSFEEKASGIFNLL-S--KMKFLLLLDDIWERID-------LAKMGVPFP------ASS 279 (397)
Q Consensus 228 ---~~~l~~~~---------~~~~~~~~~~l~~~L-~--~kr~LlVlDdv~~~~~-------~~~l~~~l~------~~~ 279 (397)
.++++... ..+.......+.+++ . +++.+|+||+++.... +-.+...+. +.-
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 44454321 112223333444432 2 5899999999974211 111111100 000
Q ss_pred CCCcEEEEEcCChhh-h----hhhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 280 RNASKIVFTTRLVDV-C----GLMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 280 ~~gs~IlvTtR~~~v-~----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
..-+-|++.+..... . ..++....++|.+++.+|...|+.++-..- -.+..++|...+||+|.-+..+
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-------~~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-------SQEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-------CHHHHHHHHHHHCCCHHHHHHH
Confidence 111112222211111 1 112234578999999999999998764221 1233899999999999999999
Q ss_pred HHhhcCC
Q 041476 355 GRAMSSK 361 (397)
Q Consensus 355 ~~~L~~~ 361 (397)
+..+..+
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9999764
No 72
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.47 E-value=2e-06 Score=84.31 Aligned_cols=166 Identities=14% Similarity=0.115 Sum_probs=102.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCc
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMK 254 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr 254 (397)
...+.|+|..|+|||+|++.+.+.... ...-..+++++ ..++...+...+... ......+.+.++ +.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~------~~~f~~~~~~~l~~~-----~~~~~~~~~~~~-~~ 207 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMS------GDEFARKAVDILQKT-----HKEIEQFKNEIC-QN 207 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEE------HHHHHHHHHHHHHHh-----hhHHHHHHHHhc-cC
Confidence 356899999999999999999997621 11122344443 355666666655421 012233444443 34
Q ss_pred EEEEEecCCCc---hhh-hhcCCCCCC-CCCCCcEEEEEcCChh---------hhhhhccCceeecCCCChHhHHHHHHH
Q 041476 255 FLLLLDDIWER---IDL-AKMGVPFPA-SSRNASKIVFTTRLVD---------VCGLMEAQKTFKVECLADQDAWELFQK 320 (397)
Q Consensus 255 ~LlVlDdv~~~---~~~-~~l~~~l~~-~~~~gs~IlvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 320 (397)
-+|||||+... ..+ +.+... +. ....|..||+|+.... +...+...-++.+++++.++...++.+
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l-~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTI-FNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHH-HHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 48899999642 222 222221 11 1123456888876432 223444566889999999999999999
Q ss_pred HhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 321 KVGEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
++...... ..-.++..+-|++.++|.|-.+.-+.
T Consensus 287 ~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 287 EIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 88543211 12346778999999999998876555
No 73
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=1.1e-05 Score=81.02 Aligned_cols=188 Identities=11% Similarity=0.063 Sum_probs=106.5
Q ss_pred CccccchhhHHHHHHHHhcCCceE-EEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHh--
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGI-IGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGER-- 230 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~v-i~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~-- 230 (397)
..++|.+..++.|.+++..++... +.++|+.|+||||+|+.++...... ...+ +-.+..+ .....|...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~-~~~~---~~pCg~C----~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA-QGPT---ATPCGVC----ESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-cCCC---CCccccc----HHHHHhhcccC
Confidence 357999999999999998876654 6899999999999999999876211 1000 0011111 011111110
Q ss_pred -------hCcccCCCHHHHHHHHHHH-----hcCCcEEEEEecCCC--chhhhhcCCCCCCCCCCCcEEE-EEcCChhhh
Q 041476 231 -------IGWLQNRSFEEKASGIFNL-----LSKMKFLLLLDDIWE--RIDLAKMGVPFPASSRNASKIV-FTTRLVDVC 295 (397)
Q Consensus 231 -------l~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Il-vTtR~~~v~ 295 (397)
+........++. ..+.+. ..+++-++|||++.. ....+.+... +-.....+.+| +||....+.
T Consensus 85 ~~~dvieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~-LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKI-VEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred CCceEEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHH-HhcCCCCeEEEEEeCChHhhH
Confidence 000001112211 112111 134556999999974 3455555444 32223344444 555555443
Q ss_pred hh-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchh-HHHHH
Q 041476 296 GL-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPL-ALITT 354 (397)
Q Consensus 296 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 354 (397)
.. .+....+++.+++.++..+.+.+.+....... ..+....|++.++|.+- ++..+
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i---~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV---DDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 32 23456899999999999888887664433111 23456778889998774 44433
No 74
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=8.5e-06 Score=82.29 Aligned_cols=192 Identities=15% Similarity=0.100 Sum_probs=110.5
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCCCCCC--eEEEEEeCCcCCHHHHHHHHHHh
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTPNYFD--IVIWVVVSKDMQLERIQQKIGER 230 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~--~~~wv~vs~~~~~~~i~~~i~~~ 230 (397)
..++|.+..++.|.+.+..++.. -+.++|+.|+||||+|+.+++.... ..... ...+-.+..+ .-.+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c-~~~~~~~~~~~~~cg~c----~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY-EGPDGDGGPTIDLCGVG----EHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc-CCccccCCCccccCccc----HHHHHHhcC
Confidence 35799999999999999887654 6889999999999999999887621 11100 0000011111 111222211
Q ss_pred hCcc-------cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEE-EcCChhhh
Q 041476 231 IGWL-------QNRSFEEKASGIFNLL-----SKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVF-TTRLVDVC 295 (397)
Q Consensus 231 l~~~-------~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Ilv-TtR~~~v~ 295 (397)
-... .....++..+ +.+.+ .+++-++|+|++... ...+.+... +-.-..++.+|+ |+....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKt-LEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKT-LEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHH-HHhCCCCeEEEEEeCChhhhh
Confidence 1110 1112222221 22222 245568999999643 344555433 322233455554 44444443
Q ss_pred hhh-ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 296 GLM-EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 296 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
..+ +....+++.+++.++....+.+.+....... ..+..+.|++.++|.+.-+....
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i---~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV---EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 222 3456889999999999999988775433122 23567889999999887665444
No 75
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.2e-05 Score=81.42 Aligned_cols=190 Identities=13% Similarity=0.094 Sum_probs=104.8
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE-eCCcCCHHHHHHHHHHhh
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVV-VSKDMQLERIQQKIGERI 231 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~i~~~i~~~l 231 (397)
..++|.+..+..|.+.+..+... .+.++|+.|+||||+|+.+.+.... ...++...|.. +...+..-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c-~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC-CCcCCccccccccCCCCccCHHHHHHhccC
Confidence 35799999999999998877664 4889999999999999999887621 11111000110 000000011111111100
Q ss_pred Ccc-------cCCCHHHHHHHHHHH-----hcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEE-EEcCChhhhh
Q 041476 232 GWL-------QNRSFEEKASGIFNL-----LSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIV-FTTRLVDVCG 296 (397)
Q Consensus 232 ~~~-------~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Il-vTtR~~~v~~ 296 (397)
... .....++... +.+. ..+.+-++|+|+++.. ...+.+... +-.-...+.+| +|++...+..
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~-LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKT-LEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred CCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHH-HhCCCCCeEEEEEeCChhhhhH
Confidence 000 1111222222 2222 2345568999999753 334444433 22222345544 4544444432
Q ss_pred h-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchh
Q 041476 297 L-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPL 349 (397)
Q Consensus 297 ~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 349 (397)
. ......+++.+++.++....+.+.+....... ..+.++.|++.++|.+-
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I---~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI---DADALQLIARKAQGSMR 223 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHH
Confidence 2 33466899999999998888877664322111 24567889999999554
No 76
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.41 E-value=4.5e-06 Score=76.25 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=79.3
Q ss_pred ccccchhhHHHHHHH---Hhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCC
Q 041476 155 TIVGLESTFDKVWRC---LVE------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQ 219 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~---L~~------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 219 (397)
.++|.+..++.|.+. +.- +....+.++|++|+||||+|+.+++.... .+......++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~-~~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKE-MNVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHh-cCcccCCceEEecHH--
Confidence 468887666555433 210 13456889999999999999999887521 111111123333221
Q ss_pred HHHHHHHHHHhhCcccCCCHHHHHHHHHHHhc-CCcEEEEEecCCCc----------hhhhhcCCCCCCCCCCCcEEEEE
Q 041476 220 LERIQQKIGERIGWLQNRSFEEKASGIFNLLS-KMKFLLLLDDIWER----------IDLAKMGVPFPASSRNASKIVFT 288 (397)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~----------~~~~~l~~~l~~~~~~gs~IlvT 288 (397)
++.... ++ ... ..+.+.++ ....+|+||++... ...+.+... .........++++
T Consensus 84 --~l~~~~---~g----~~~----~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~-~e~~~~~~~vila 149 (261)
T TIGR02881 84 --DLVGEY---IG----HTA----QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKG-MEDNRNEFVLILA 149 (261)
T ss_pred --Hhhhhh---cc----chH----HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHH-HhccCCCEEEEec
Confidence 111110 00 011 11222221 12358999999742 122333322 2222233455566
Q ss_pred cCChhhhh------hh-c-cCceeecCCCChHhHHHHHHHHhCC
Q 041476 289 TRLVDVCG------LM-E-AQKTFKVECLADQDAWELFQKKVGE 324 (397)
Q Consensus 289 tR~~~v~~------~~-~-~~~~~~l~~L~~~~~~~Lf~~~~~~ 324 (397)
+...+... .+ . ....+++++++.++..+++.+.+..
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 54433211 11 1 1346889999999999999988754
No 77
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.41 E-value=4.5e-06 Score=77.01 Aligned_cols=132 Identities=12% Similarity=0.116 Sum_probs=72.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEE
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFL 256 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~L 256 (397)
.+.++|++|+|||++|+.++... ..........|+.++. .++.. .+... +.......+.+ -..-+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l-~~~g~~~~~~~v~v~~----~~l~~----~~~g~---~~~~~~~~~~~---a~~gv 124 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL-HRLGYVRKGHLVSVTR----DDLVG----QYIGH---TAPKTKEILKR---AMGGV 124 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH-HHcCCcccceEEEecH----HHHhH----hhccc---chHHHHHHHHH---ccCcE
Confidence 68899999999999998887766 2122222223444442 12222 12111 11111112222 13469
Q ss_pred EEEecCCCc-----------hhhhhcCCCCCCCCCCCcEEEEEcCChhhhhhhc--------cCceeecCCCChHhHHHH
Q 041476 257 LLLDDIWER-----------IDLAKMGVPFPASSRNASKIVFTTRLVDVCGLME--------AQKTFKVECLADQDAWEL 317 (397)
Q Consensus 257 lVlDdv~~~-----------~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~~~--------~~~~~~l~~L~~~~~~~L 317 (397)
|+||++... ..++.+... +.....+.+||+++........+. ....+++++++.+|...+
T Consensus 125 L~iDEi~~L~~~~~~~~~~~~~~~~Ll~~-le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 125 LFIDEAYYLYRPDNERDYGQEAIEILLQV-MENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEechhhhccCCCccchHHHHHHHHHHH-HhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 999999632 112333332 333344567777766543321111 135789999999999999
Q ss_pred HHHHhCC
Q 041476 318 FQKKVGE 324 (397)
Q Consensus 318 f~~~~~~ 324 (397)
+.+.+..
T Consensus 204 ~~~~l~~ 210 (284)
T TIGR02880 204 AGLMLKE 210 (284)
T ss_pred HHHHHHH
Confidence 9887743
No 78
>PRK06620 hypothetical protein; Validated
Probab=98.41 E-value=5.6e-06 Score=73.03 Aligned_cols=136 Identities=12% Similarity=0.029 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcE
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKF 255 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~ 255 (397)
+.+.|+|++|+|||+|++.+++.. .. .++. .... . . +.+ ...-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~------------------~-~-------~~~-~~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF------------------N-E-------EIL-EKYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh------------------c-h-------hHH-hcCC
Confidence 668999999999999999987765 11 1111 0000 0 0 011 1235
Q ss_pred EEEEecCCCchh--hhhcCCCCCCCCCCCcEEEEEcCChhh-------hhhhccCceeecCCCChHhHHHHHHHHhCCcc
Q 041476 256 LLLLDDIWERID--LAKMGVPFPASSRNASKIVFTTRLVDV-------CGLMEAQKTFKVECLADQDAWELFQKKVGEET 326 (397)
Q Consensus 256 LlVlDdv~~~~~--~~~l~~~l~~~~~~gs~IlvTtR~~~v-------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 326 (397)
+|++||+....+ +-.+... ....|..||+|++.... ...+....++++++++.++...++++.+....
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~---~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNI---INEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred EEEEeccccchHHHHHHHHHH---HHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 788999963211 1111111 11346689998885443 23344556899999999998888888765322
Q ss_pred CCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 327 LESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 327 ~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
.. -.+++.+-|++.+.|.--.+.-+
T Consensus 165 l~---l~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 165 VT---ISRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred CC---CCHHHHHHHHHHccCCHHHHHHH
Confidence 12 22566788888887765544433
No 79
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=2.9e-05 Score=73.74 Aligned_cols=171 Identities=17% Similarity=0.164 Sum_probs=110.1
Q ss_pred CCccccchhhHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 153 QPTIVGLESTFDKVWRCLVE----GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
+..++||+.+++.+.+++.. ...+.+-|.|-+|.|||.+...++.+.. ....-.+++++++..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~-~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLS-KSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhh-hhcccceeEEEeeccccchHHHHHHHH
Confidence 35689999999999999865 3567888999999999999999999872 111223567887776566777888887
Q ss_pred HhhCcc--cCCCHHHHHHHHHHHhcCC--cEEEEEecCCCch--hhhhcCCCCCCCCCCCcEEEEEcCCh--hh----hh
Q 041476 229 ERIGWL--QNRSFEEKASGIFNLLSKM--KFLLLLDDIWERI--DLAKMGVPFPASSRNASKIVFTTRLV--DV----CG 296 (397)
Q Consensus 229 ~~l~~~--~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~--~~~~l~~~l~~~~~~gs~IlvTtR~~--~v----~~ 296 (397)
..+-.. ......+....+.++..+. .+|+|+|+++... .-..+...+.....+++++|+----. .. ..
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 776211 2223356666777777653 5899999997421 11122222122333455555322111 11 11
Q ss_pred hhc-----cCceeecCCCChHhHHHHHHHHhCC
Q 041476 297 LME-----AQKTFKVECLADQDAWELFQKKVGE 324 (397)
Q Consensus 297 ~~~-----~~~~~~l~~L~~~~~~~Lf~~~~~~ 324 (397)
.+. ....+...|.+.++-.++|..++..
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 111 2346788999999999999998754
No 80
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.37 E-value=2.7e-05 Score=70.95 Aligned_cols=192 Identities=15% Similarity=0.092 Sum_probs=114.3
Q ss_pred hHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC---CCeEEEEEeCCcCCHHHHHHHHHHhhCcc-
Q 041476 162 TFDKVWRCLVE---GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNY---FDIVIWVVVSKDMQLERIQQKIGERIGWL- 234 (397)
Q Consensus 162 ~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~~~~~~i~~~i~~~l~~~- 234 (397)
.++++.+++.. ...+.+.|+|.+|.|||++++.+........+. --.++.|.....++...++..|+.+++.+
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 34444444443 245679999999999999999999876321110 11477778889999999999999999987
Q ss_pred -cCCCHHHHHHHHHHHhcC-CcEEEEEecCCCc---------hhhhhcCCCCCCCCCCCcEEEEEcCChhhhhhh-----
Q 041476 235 -QNRSFEEKASGIFNLLSK-MKFLLLLDDIWER---------IDLAKMGVPFPASSRNASKIVFTTRLVDVCGLM----- 298 (397)
Q Consensus 235 -~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~---------~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~~----- 298 (397)
...+...........|+. +-=+||+|++.+. ..++.+ .. +.+.-.-+-|.+.|+.---+-..
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~-L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KF-LGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HH-HhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 444555555556666664 4559999999752 112222 11 22222334455665543222111
Q ss_pred ccCceeecCCCCh-HhHHHHHHHHh--CCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 299 EAQKTFKVECLAD-QDAWELFQKKV--GEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 299 ~~~~~~~l~~L~~-~~~~~Lf~~~~--~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
+-..++.+..-.. ++...|+.... ..-....+-...+++..|...++|+.=-+..+-
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 1123445554433 34445543322 111112334457889999999999876655443
No 81
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=9.6e-06 Score=82.42 Aligned_cols=190 Identities=13% Similarity=0.109 Sum_probs=109.3
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
..++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++... ...... ....++.-.....|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 4689999999999999887655 4568999999999999999998762 111000 0001111222333322221
Q ss_pred cc-------cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCC-hhhhhh
Q 041476 233 WL-------QNRSFEEKASGIFNLL-----SKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRL-VDVCGL 297 (397)
Q Consensus 233 ~~-------~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~-~~v~~~ 297 (397)
.. .....++. ..+.+.+ .+++-++|||++... ...+.+... +-.....+.+|+++.+ ..+...
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~-LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKT-LEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHH-HhcCCCCeEEEEEeCChhhhhHH
Confidence 11 01112222 1222222 245679999999643 445555433 2222334555555543 333222
Q ss_pred -hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 298 -MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 298 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
.+....+++.+++..+....+.+.+....... ..+....|++.|+|.+..+....
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i---~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL---EPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 22345788999999999888887765433122 24567899999999886554443
No 82
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.9e-05 Score=80.33 Aligned_cols=179 Identities=13% Similarity=0.145 Sum_probs=106.9
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcc--------------------CCCCCCeEEEE
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLH--------------------TPNYFDIVIWV 212 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~--------------------~~~~f~~~~wv 212 (397)
..++|.+..++.|..++..+... .+.++|+.|+||||+|+.+...... ...+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 35799999999999999887665 5789999999999999998876521 0112332 122
Q ss_pred EeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEE-EEc
Q 041476 213 VVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIV-FTT 289 (397)
Q Consensus 213 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Il-vTt 289 (397)
..+......++. ++..++... - ..+++=++|+|++... ..++.+... +-.-..++.+| +|+
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~-------------P-~~~~~KVvIIdea~~Ls~~a~naLLK~-LEepp~~tifIL~tt 159 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIP-------------P-QIGKYKIYIIDEVHMLSQAAFNAFLKT-LEEPPSYAIFILATT 159 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhC-------------c-ccCCcEEEEEECcccCCHHHHHHHHHH-HhCCCCCeEEEEEeC
Confidence 222111122211 111111100 0 1234558899998753 445555444 32223345555 455
Q ss_pred CChhhhhh-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHH
Q 041476 290 RLVDVCGL-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALI 352 (397)
Q Consensus 290 R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 352 (397)
....+... .+....+++.+++.++....+.+.+....... ..+.++.|++.++|..--+.
T Consensus 160 ~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i---~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 160 EKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA---EPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred CchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 54554432 23456899999999999998888764433221 23457889999999665443
No 83
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.36 E-value=1.9e-05 Score=76.29 Aligned_cols=200 Identities=20% Similarity=0.236 Sum_probs=111.5
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCH
Q 041476 154 PTIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQL 220 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 220 (397)
+++.|++..++++.+.+.- ..++.|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 4678999999998887532 245678999999999999999999986 222 222221
Q ss_pred HHHHHHHHHhhCcccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCch------------h----hhhcCCCCC-CCCCCC
Q 041476 221 ERIQQKIGERIGWLQNRSFEEKASGIFNLL-SKMKFLLLLDDIWERI------------D----LAKMGVPFP-ASSRNA 282 (397)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~------------~----~~~l~~~l~-~~~~~g 282 (397)
.++... .. . ........+.+.. ...+.+|+|||++... . +..+...+- .....+
T Consensus 199 ~~l~~~----~~---g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 199 SELVQK----FI---G-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred HHHhHh----hc---c-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 111111 10 0 1112222232222 3467899999997420 1 111111100 012235
Q ss_pred cEEEEEcCChhhhh--hh---ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchh-HHH---H
Q 041476 283 SKIVFTTRLVDVCG--LM---EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPL-ALI---T 353 (397)
Q Consensus 283 s~IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~---~ 353 (397)
..||.||....... .. ..+..+++.+.+.++..++|+.++.......+.. ...+++.+.|+-- -|. .
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~sgadl~~l~~ 346 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGASGADLKAICT 346 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCCHHHHHHHHH
Confidence 66777776544321 11 1345789999999999999998775433222222 4666777777542 222 2
Q ss_pred HHHhh--cCC---CChhHHHHHHHHHhcc
Q 041476 354 TGRAM--SSK---KTPEEWSYAIQMLRRS 377 (397)
Q Consensus 354 ~~~~L--~~~---~~~~~w~~~~~~l~~~ 377 (397)
-|++. +.+ -+.++...+++.....
T Consensus 347 eA~~~a~~~~~~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 347 EAGMFAIRDDRTEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHhcc
Confidence 22222 222 3667777777766554
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=98.35 E-value=2.1e-05 Score=72.63 Aligned_cols=132 Identities=11% Similarity=0.144 Sum_probs=72.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEE
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFL 256 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~L 256 (397)
.+.++|++|+||||+|+.+++.. ...+.-...-|+.++. .++..... +. ........+.+ ...-+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~----~~l~~~~~---g~----~~~~~~~~l~~---a~ggV 125 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTR----DDLVGQYI---GH----TAPKTKEVLKK---AMGGV 125 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecH----HHHHHHHh---cc----chHHHHHHHHH---ccCCE
Confidence 57899999999999999998875 1112211122444441 22222211 11 11111111222 12359
Q ss_pred EEEecCCCc-----------hhhhhcCCCCCCCCCCCcEEEEEcCChhhhhhh--------ccCceeecCCCChHhHHHH
Q 041476 257 LLLDDIWER-----------IDLAKMGVPFPASSRNASKIVFTTRLVDVCGLM--------EAQKTFKVECLADQDAWEL 317 (397)
Q Consensus 257 lVlDdv~~~-----------~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~L 317 (397)
|+||++... .....+... ......+.+||+++........+ .....+.+.+++.++..++
T Consensus 126 LfIDE~~~l~~~~~~~~~~~e~~~~L~~~-me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 126 LFIDEAYYLYKPDNERDYGSEAIEILLQV-MENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEccchhccCCCccchHHHHHHHHHHH-HhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 999999642 112222222 22333456777777654432211 1245789999999999999
Q ss_pred HHHHhCC
Q 041476 318 FQKKVGE 324 (397)
Q Consensus 318 f~~~~~~ 324 (397)
+.+.+..
T Consensus 205 ~~~~l~~ 211 (287)
T CHL00181 205 AKIMLEE 211 (287)
T ss_pred HHHHHHH
Confidence 9888754
No 85
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=2.1e-05 Score=77.28 Aligned_cols=176 Identities=15% Similarity=0.183 Sum_probs=102.3
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC--------------------CCCCeEEEE
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTP--------------------NYFDIVIWV 212 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~--------------------~~f~~~~wv 212 (397)
.+++|.+..+..|.+++..+.. ..+.++|+.|+||||+|+.+.+...... .+++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 4579999999999999987765 5678999999999999999988762110 0111 1111
Q ss_pred EeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcC
Q 041476 213 VVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTR 290 (397)
Q Consensus 213 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR 290 (397)
........+++ +++.+.+. ..-..+++-++|+|++... ...+.+... +-.....+.+|++|.
T Consensus 96 ~g~~~~gid~i-r~i~~~l~--------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~-lEep~~~~~~Il~t~ 159 (451)
T PRK06305 96 DGASHRGIEDI-RQINETVL--------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKT-LEEPPQHVKFFLATT 159 (451)
T ss_pred eccccCCHHHH-HHHHHHHH--------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHH-hhcCCCCceEEEEeC
Confidence 11111111111 11111110 0011356678999998643 334444333 222233555665553
Q ss_pred -Chhhhh-hhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchh
Q 041476 291 -LVDVCG-LMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPL 349 (397)
Q Consensus 291 -~~~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 349 (397)
...+.. .......+++.++++++....+.+.+...... -..+.++.|++.++|.+-
T Consensus 160 ~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~---i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 160 EIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE---TSREALLPIARAAQGSLR 217 (451)
T ss_pred ChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHH
Confidence 333322 22345688999999999988888766432211 124557889999999664
No 86
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.33 E-value=1.4e-05 Score=71.24 Aligned_cols=210 Identities=18% Similarity=0.193 Sum_probs=117.3
Q ss_pred CccccchhhHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVE-----GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
..|+|.++.++++.=.+.. +.+-.+.++||+|.||||||+.+++.. . ..+. +.+.+-+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-g--vn~k------~tsGp~l-------- 88 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-G--VNLK------ITSGPAL-------- 88 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-c--CCeE------ecccccc--------
Confidence 3589998888877665542 467789999999999999999999998 2 2221 1111110
Q ss_pred HhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc---------hhhhhcCCCCCCCCCCCcE-----------EEEE
Q 041476 229 ERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER---------IDLAKMGVPFPASSRNASK-----------IVFT 288 (397)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---------~~~~~l~~~l~~~~~~gs~-----------IlvT 288 (397)
....+++..|.. | ...=.|++|++... ...+++..-+.-..++++| |=.|
T Consensus 89 --------eK~gDlaaiLt~-L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 89 --------EKPGDLAAILTN-L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred --------cChhhHHHHHhc-C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 011122222221 1 22346677877531 1122221111112222233 3368
Q ss_pred cCChhhhhhhc--cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcC------
Q 041476 289 TRLVDVCGLME--AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSS------ 360 (397)
Q Consensus 289 tR~~~v~~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~------ 360 (397)
||.-.+...+. ...+.+++.-+.+|-.++..+.+..-+.+.+ ++-+.+|++...|-|--..-+.+..+.
T Consensus 159 Tr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~ 235 (332)
T COG2255 159 TRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLRRVRDFAQVKG 235 (332)
T ss_pred cccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhc
Confidence 88766644333 2346789999999999999988754332232 455899999999999654443333221
Q ss_pred C--CChhHHHHHHHHHhcccCCCCCChhHHHhhhh
Q 041476 361 K--KTPEEWSYAIQMLRRSAYEFPGMEKEVFRLLK 393 (397)
Q Consensus 361 ~--~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~L~ 393 (397)
. -+..-=..+++.|.-....+...+..+++++.
T Consensus 236 ~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li 270 (332)
T COG2255 236 DGDIDRDIADKALKMLDVDELGLDEIDRKYLRALI 270 (332)
T ss_pred CCcccHHHHHHHHHHhCcccccccHHHHHHHHHHH
Confidence 1 12333344555555444444444445555543
No 87
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.33 E-value=5.6e-07 Score=84.18 Aligned_cols=178 Identities=21% Similarity=0.225 Sum_probs=120.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC-CeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYF-DIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSK 252 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~ 252 (397)
..+.+.++|+|||||||++-++.. . ...| +.+.++...+..+...+.-.....+... ..+-+.....+.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~-~~~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLH-VQPGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhcccc-cccchHHHHHHHHHHhh
Confidence 458899999999999999999988 4 3344 5666777777667666666666656654 22223344556777788
Q ss_pred CcEEEEEecCCCchh-hhhcCCCCCCCCCCCcEEEEEcCChhhhhhhccCceeecCCCChH-hHHHHHHHHhCCc--cCC
Q 041476 253 MKFLLLLDDIWERID-LAKMGVPFPASSRNASKIVFTTRLVDVCGLMEAQKTFKVECLADQ-DAWELFQKKVGEE--TLE 328 (397)
Q Consensus 253 kr~LlVlDdv~~~~~-~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~--~~~ 328 (397)
+|.++|+||..+..+ -..+... +-.+...-.|+.|+|..... .......+.+|+.. ++.++|...+... ...
T Consensus 88 rr~llvldncehl~~~~a~~i~a-ll~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVA-LLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHH-HHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 999999999865321 1122222 22233445688888865432 34456677888754 7889987765321 112
Q ss_pred CCCChHHHHHHHHHHcCCchhHHHHHHHhhcC
Q 041476 329 SHPDIPELAQTVANECSGLPLALITTGRAMSS 360 (397)
Q Consensus 329 ~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~ 360 (397)
..........+|.++..|.|++|...++..+.
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~s 195 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRS 195 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHh
Confidence 33445677899999999999999999988876
No 88
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=3.3e-05 Score=76.67 Aligned_cols=178 Identities=12% Similarity=0.126 Sum_probs=105.9
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCCC-C----------------CC-eEEEEEe
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTPN-Y----------------FD-IVIWVVV 214 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~-~----------------f~-~~~wv~v 214 (397)
..++|.+.....|...+..+..+ .+.++|+.|+||||+|+.+.+....... . +. .++.+..
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 35799999999999999887665 5689999999999999998877521100 0 00 1111111
Q ss_pred CCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHH----hcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEE
Q 041476 215 SKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNL----LSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFT 288 (397)
Q Consensus 215 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvT 288 (397)
+... ..++..+.+... ..+++-++|+|++... ...+.+... +-.....+.+|++
T Consensus 94 as~~-------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~-LEEpp~~t~FIL~ 153 (535)
T PRK08451 94 ASNR-------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKT-LEEPPSYVKFILA 153 (535)
T ss_pred cccc-------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHH-HhhcCCceEEEEE
Confidence 1111 122222222110 1145569999999753 344444333 2222334666655
Q ss_pred cCCh-hhhh-hhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 289 TRLV-DVCG-LMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 289 tR~~-~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
|.+. .+.. ..+....+++.+++.++....+.+.+....... ..+.+..|++.++|.+--+...
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 5543 2221 223356889999999999998887764433111 2456788999999988555444
No 89
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.31 E-value=5.7e-06 Score=79.57 Aligned_cols=107 Identities=19% Similarity=0.100 Sum_probs=71.8
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCc
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGW 233 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (397)
.++++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.. .....|+.+.||.+++.++..+++..+.-. +.
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~v 250 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GV 250 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCC-CC
Confidence 3468888999999998874 3577789999999999999999987 445578889999999988877765433110 00
Q ss_pred ccCCCHHHHHHHHHHHhc--CCcEEEEEecCCC
Q 041476 234 LQNRSFEEKASGIFNLLS--KMKFLLLLDDIWE 264 (397)
Q Consensus 234 ~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~ 264 (397)
.-.....-..+.+..... +++++||||++..
T Consensus 251 gy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 251 GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred CeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 000000011112222222 4689999999963
No 90
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.31 E-value=2.7e-05 Score=75.85 Aligned_cols=181 Identities=24% Similarity=0.180 Sum_probs=104.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCc
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMK 254 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr 254 (397)
...+.|+|++|+|||+|++.+++... ....-..+++++. .++...+...+... .... +.+.+++ .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~---~~~~----~~~~~~~-~ 200 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRNN---KMEE----FKEKYRS-V 200 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHcC---CHHH----HHHHHHh-C
Confidence 35789999999999999999999872 1111124555543 34444555444321 2222 2333332 3
Q ss_pred EEEEEecCCCch---hh-hhcCCCCCC-CCCCCcEEEEEcCChhh---------hhhhccCceeecCCCChHhHHHHHHH
Q 041476 255 FLLLLDDIWERI---DL-AKMGVPFPA-SSRNASKIVFTTRLVDV---------CGLMEAQKTFKVECLADQDAWELFQK 320 (397)
Q Consensus 255 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~~gs~IlvTtR~~~v---------~~~~~~~~~~~l~~L~~~~~~~Lf~~ 320 (397)
-+|+|||+.... .+ +.+... +. ....+..+|+|+....- ...+.....+.+++.+.++-..++.+
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~-~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHT-FNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHH-HHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 489999997421 11 222111 11 11234567777764221 12223345789999999999999999
Q ss_pred HhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHh------hcC-CCChhHHHHHHHHH
Q 041476 321 KVGEETLESHPDIPELAQTVANECSGLPLALITTGRA------MSS-KKTPEEWSYAIQML 374 (397)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~------L~~-~~~~~~w~~~~~~l 374 (397)
.+....... .+++.+.|++.+.|.+-.+.-+-.. +.. .-+....+.++..+
T Consensus 280 ~~~~~~~~l---~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 280 KAEEEGLEL---PDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 886533222 2567888999998876644322211 122 24666777776654
No 91
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.30 E-value=3.8e-06 Score=79.52 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=62.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc--CCHHHHHHHHHHhhCcc--cCCCH--HHHH----
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD--MQLERIQQKIGERIGWL--QNRSF--EEKA---- 243 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~i~~~i~~~l~~~--~~~~~--~~~~---- 243 (397)
.-..++|+|++|+|||||++.+++... .++|+..+|+.+.+. .++.++++.+...+-.. ..... ....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 456899999999999999999999983 348999999998865 78999999985433222 11111 1111
Q ss_pred HHHHHH-hcCCcEEEEEecCCC
Q 041476 244 SGIFNL-LSKMKFLLLLDDIWE 264 (397)
Q Consensus 244 ~~l~~~-L~~kr~LlVlDdv~~ 264 (397)
+..... -.+++.+|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 112222 257999999999963
No 92
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=5.5e-05 Score=76.12 Aligned_cols=192 Identities=13% Similarity=0.084 Sum_probs=107.7
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH---H
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG---E 229 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~---~ 229 (397)
..++|.+..+..|..++.+++.+ .+.++|+.|+||||+|+.+++.... ...... ..+..+.+-..+..... .
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c-~~~~~~---~pC~~C~~C~~i~~~~~~dv~ 91 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC-VNGPTP---MPCGECSSCKSIDNDNSLDVI 91 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc-ccCCCC---CCCccchHHHHHHcCCCCCeE
Confidence 35799999999999999887654 5889999999999999999888621 110000 00111111111100000 0
Q ss_pred hhCcccCCCHHHHHHHHHHH-----hcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCC-hhhhhh-hcc
Q 041476 230 RIGWLQNRSFEEKASGIFNL-----LSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRL-VDVCGL-MEA 300 (397)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~-~~v~~~-~~~ 300 (397)
.+........++..+ +.+. ..+++-++|+|++... ..++.+... +-.....+.+|++|.. ..+... .+.
T Consensus 92 ~idgas~~~vddIr~-l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~-LEepp~~~vfI~~tte~~kL~~tI~SR 169 (563)
T PRK06647 92 EIDGASNTSVQDVRQ-IKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKT-IEEPPPYIVFIFATTEVHKLPATIKSR 169 (563)
T ss_pred EecCcccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHh-hccCCCCEEEEEecCChHHhHHHHHHh
Confidence 000000111222221 2111 2356668999999643 445666554 3333345556555543 333322 233
Q ss_pred CceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 301 QKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 301 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
...+++.+++.++....+.+.+...... -..+.+..|++.++|.+-.+...
T Consensus 170 c~~~~f~~l~~~el~~~L~~i~~~egi~---id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 170 CQHFNFRLLSLEKIYNMLKKVCLEDQIK---YEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4578999999999988888776433212 22455788999999987544333
No 93
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.29 E-value=9.9e-06 Score=76.21 Aligned_cols=145 Identities=11% Similarity=0.133 Sum_probs=83.9
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
..++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.. ... ...++.+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 4579999999999999987654 566779999999999999998875 221 23344443 222211111111000
Q ss_pred cccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hh-hhhcCCCCCCCCCCCcEEEEEcCChhh-hh-hhccCceeecC
Q 041476 233 WLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--ID-LAKMGVPFPASSRNASKIVFTTRLVDV-CG-LMEAQKTFKVE 307 (397)
Q Consensus 233 ~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~-~~~l~~~l~~~~~~gs~IlvTtR~~~v-~~-~~~~~~~~~l~ 307 (397)
.. -+.+.+-+|||||+... .. ...+... +.....++++|+||..... .. ..+....+.+.
T Consensus 94 ------------~~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~-le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~ 158 (316)
T PHA02544 94 ------------TV--SLTGGGKVIIIDEFDRLGLADAQRHLRSF-MEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFG 158 (316)
T ss_pred ------------hh--cccCCCeEEEEECcccccCHHHHHHHHHH-HHhcCCCceEEEEcCChhhchHHHHhhceEEEeC
Confidence 00 01234568999999743 22 2222222 2223356788888865432 11 11223467777
Q ss_pred CCChHhHHHHHHH
Q 041476 308 CLADQDAWELFQK 320 (397)
Q Consensus 308 ~L~~~~~~~Lf~~ 320 (397)
..+.++...++..
T Consensus 159 ~p~~~~~~~il~~ 171 (316)
T PHA02544 159 VPTKEEQIEMMKQ 171 (316)
T ss_pred CCCHHHHHHHHHH
Confidence 7788877766543
No 94
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=5.7e-05 Score=74.74 Aligned_cols=178 Identities=11% Similarity=0.091 Sum_probs=104.5
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCCC-C-----------------CCeEEEEEe
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTPN-Y-----------------FDIVIWVVV 214 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~-~-----------------f~~~~wv~v 214 (397)
..++|.+..+..|.+++..+..+ .+.++|+.|+||||+|+.++........ . |...+++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 35799999999999999876654 5678999999999999998887521000 0 111112211
Q ss_pred CCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEE
Q 041476 215 SKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLL-----SKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVF 287 (397)
Q Consensus 215 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Ilv 287 (397)
+... ..++ .+.+.+.+ .+++-++|+|+++.. ...+.+... +........+|+
T Consensus 96 as~~-------------------gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~-LEepp~~~v~Il 154 (486)
T PRK14953 96 ASNR-------------------GIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKT-LEEPPPRTIFIL 154 (486)
T ss_pred ccCC-------------------CHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHH-HhcCCCCeEEEE
Confidence 1111 1111 11222222 356679999999743 344454333 222223344444
Q ss_pred -EcCChhhhh-hhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 288 -TTRLVDVCG-LMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 288 -TtR~~~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
|++...+.. .......+.+.+++.++....+.+.+....... ..+....|++.++|.+-.+....
T Consensus 155 ~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 155 CTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 444444332 223345789999999999988888764333111 23456788899999776554443
No 95
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.28 E-value=1.9e-05 Score=77.99 Aligned_cols=182 Identities=22% Similarity=0.178 Sum_probs=105.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCc
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMK 254 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr 254 (397)
...+.|+|++|+|||+|++.+.+... ....-..+++++. .++...+...+.. ... ..+.+.++ +.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~------~~~~~~~~~~~~~---~~~----~~~~~~~~-~~ 212 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTS------EKFTNDFVNALRN---NTM----EEFKEKYR-SV 212 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHHc---CcH----HHHHHHHh-cC
Confidence 35789999999999999999999972 1111223555543 3334444444432 112 22333333 34
Q ss_pred EEEEEecCCCc---h-hhhhcCCCCCCCCCCCcEEEEEcCChhh---------hhhhccCceeecCCCChHhHHHHHHHH
Q 041476 255 FLLLLDDIWER---I-DLAKMGVPFPASSRNASKIVFTTRLVDV---------CGLMEAQKTFKVECLADQDAWELFQKK 321 (397)
Q Consensus 255 ~LlVlDdv~~~---~-~~~~l~~~l~~~~~~gs~IlvTtR~~~v---------~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 321 (397)
-+|+|||+... . ..+.+...+-.....|..||+|+....- ...+.....+++++.+.++...++++.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 48999999642 1 1122221100011224557777765321 223344568999999999999999998
Q ss_pred hCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHh------hcCC-CChhHHHHHHHHH
Q 041476 322 VGEETLESHPDIPELAQTVANECSGLPLALITTGRA------MSSK-KTPEEWSYAIQML 374 (397)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~------L~~~-~~~~~w~~~~~~l 374 (397)
+...... -.+++.+.|++.+.|..-.+.-+-.. +.++ -+....+.+++.+
T Consensus 293 ~~~~~~~---l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 293 AEEEGID---LPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHcCCC---CCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 7543212 23567888999999876644322211 1222 4777777777655
No 96
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.27 E-value=1.1e-05 Score=84.32 Aligned_cols=155 Identities=15% Similarity=0.238 Sum_probs=89.1
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcc--CCCCC-CeEEEEEeCCcCCHHHHHHHHHHhh
Q 041476 155 TIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLH--TPNYF-DIVIWVVVSKDMQLERIQQKIGERI 231 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~--~~~~f-~~~~wv~vs~~~~~~~i~~~i~~~l 231 (397)
.++||++++++++..|......-+.++|++|+|||++|+.+++.... +...+ +..+|. + ++..+... .
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a~----~ 253 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLAG----T 253 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhhh----c
Confidence 57999999999999988766667789999999999999999988621 11111 333432 1 11111110 0
Q ss_pred CcccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCch----------hhhhcCCCCCCCCCCCcEEEEEcCChhhhh----
Q 041476 232 GWLQNRSFEEKASGIFNLL-SKMKFLLLLDDIWERI----------DLAKMGVPFPASSRNASKIVFTTRLVDVCG---- 296 (397)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~----------~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~---- 296 (397)
. .....++....+.+.+ ..++.+|++|++.... +...+..+.+. ...-++|-+|...+...
T Consensus 254 ~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~~~~~~~ 329 (731)
T TIGR02639 254 K--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEYKNHFEK 329 (731)
T ss_pred c--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHHHHHhhh
Confidence 0 0112222333333333 2468999999986321 11222222122 12245555555433211
Q ss_pred ---hhccCceeecCCCChHhHHHHHHHHh
Q 041476 297 ---LMEAQKTFKVECLADQDAWELFQKKV 322 (397)
Q Consensus 297 ---~~~~~~~~~l~~L~~~~~~~Lf~~~~ 322 (397)
...-...+++++++.++..+++++..
T Consensus 330 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 330 DRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11223578999999999999998654
No 97
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.26 E-value=9.3e-06 Score=79.55 Aligned_cols=182 Identities=18% Similarity=0.141 Sum_probs=104.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCC
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFD-IVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKM 253 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~k 253 (397)
...+.|+|++|+|||+|++.+++... ..+.+ .++|++. .++..++...+... +.. .+.+.+..+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~---~~~----~f~~~~~~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG---KLN----EFREKYRKK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc---cHH----HHHHHHHhc
Confidence 45699999999999999999999872 22233 4566653 45556665555321 222 233333345
Q ss_pred cEEEEEecCCCc---hhh-hhcCCCCCCCCCCCcEEEEEcC-Chhh--------hhhhccCceeecCCCChHhHHHHHHH
Q 041476 254 KFLLLLDDIWER---IDL-AKMGVPFPASSRNASKIVFTTR-LVDV--------CGLMEAQKTFKVECLADQDAWELFQK 320 (397)
Q Consensus 254 r~LlVlDdv~~~---~~~-~~l~~~l~~~~~~gs~IlvTtR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~Lf~~ 320 (397)
.-+|+|||+... ..+ ..+...+-.....|..||+||. ...- ...+.....+++++.+.+.-..++++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 568999999742 111 1221110001122456888875 3222 12233455889999999999999998
Q ss_pred HhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHH------hhcCC-CChhHHHHHHHHH
Q 041476 321 KVGEETLESHPDIPELAQTVANECSGLPLALITTGR------AMSSK-KTPEEWSYAIQML 374 (397)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~------~L~~~-~~~~~w~~~~~~l 374 (397)
.+....... .+++.+.|++.+.|..-.+.-+-. .+.++ -+...-+.++..+
T Consensus 275 ~~~~~~~~l---~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 275 MLEIEHGEL---PEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHhcCCCC---CHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 875433222 256688888888875443332221 11222 3566666655543
No 98
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=5.1e-05 Score=77.51 Aligned_cols=183 Identities=11% Similarity=0.086 Sum_probs=102.9
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH-Hh-
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG-ER- 230 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~-~~- 230 (397)
..++|.+..+..|..++..+++ +.+.++|+.|+||||+|+.++........... +-.+..+ .... ..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~---~~pC~~C-------~~~~~~~~ 87 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL---LEPCQEC-------IENVNNSL 87 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC---CCchhHH-------HHhhcCCC
Confidence 3579999999999999987765 45689999999999999999877621110000 0000000 0000 00
Q ss_pred ----hCcccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcE-EEEEcCChhhhh-h
Q 041476 231 ----IGWLQNRSFEEKASGIFNLL-----SKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASK-IVFTTRLVDVCG-L 297 (397)
Q Consensus 231 ----l~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~-IlvTtR~~~v~~-~ 297 (397)
+........++ ++.+.+.+ .+++-++|+|++... ..++.+... +-.....+. |++|+....+.. .
T Consensus 88 Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKt-LEEPP~~tifILaTte~~KLl~TI 165 (725)
T PRK07133 88 DIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKT-LEEPPKHVIFILATTEVHKIPLTI 165 (725)
T ss_pred cEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHH-hhcCCCceEEEEEcCChhhhhHHH
Confidence 00000011111 12222222 356669999999743 445555433 222122344 445555555432 2
Q ss_pred hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHH
Q 041476 298 MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLAL 351 (397)
Q Consensus 298 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 351 (397)
......+++.+++.++....+...+....... ..+.+..|++.++|.+--+
T Consensus 166 ~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i---d~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 166 LSRVQRFNFRRISEDEIVSRLEFILEKENISY---EKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HhhceeEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 33456899999999999988887654332111 2345778999998866433
No 99
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.25 E-value=1.2e-05 Score=77.82 Aligned_cols=192 Identities=18% Similarity=0.163 Sum_probs=110.7
Q ss_pred hhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCH
Q 041476 160 ESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSF 239 (397)
Q Consensus 160 ~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~ 239 (397)
..-..++.+.+..... ++.|.|+-++||||+++.+..... .. .+++...+...-..-+.+..+
T Consensus 23 ~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~~~l~d~~~---------- 85 (398)
T COG1373 23 RKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDRIELLDLLR---------- 85 (398)
T ss_pred HhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcchhhHHHHHH----------
Confidence 3445555555543333 999999999999999977777652 22 555543322111111111111
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhhh------hhccCceeecCCCChHh
Q 041476 240 EEKASGIFNLLSKMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVCG------LMEAQKTFKVECLADQD 313 (397)
Q Consensus 240 ~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~------~~~~~~~~~l~~L~~~~ 313 (397)
.+...-..++.+|+||.|....+|...... +.+.++. +|++|+-+..... ..+-...+++.|||..|
T Consensus 86 -----~~~~~~~~~~~yifLDEIq~v~~W~~~lk~-l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~E 158 (398)
T COG1373 86 -----AYIELKEREKSYIFLDEIQNVPDWERALKY-LYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFRE 158 (398)
T ss_pred -----HHHHhhccCCceEEEecccCchhHHHHHHH-HHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHH
Confidence 111111127789999999999999987766 5555555 8888888766522 11234578999999999
Q ss_pred HHH-------------HHHHHhCCcc----CCCCCC-------hHH-HHHHHHHHcCC-chhHHHHHHHhhcCC-CChhH
Q 041476 314 AWE-------------LFQKKVGEET----LESHPD-------IPE-LAQTVANECSG-LPLALITTGRAMSSK-KTPEE 366 (397)
Q Consensus 314 ~~~-------------Lf~~~~~~~~----~~~~~~-------~~~-~~~~I~~~c~G-lPLai~~~~~~L~~~-~~~~~ 366 (397)
... +|.+...... ...... ... +-..|++.++= -+-.++.+..++..+ ...-.
T Consensus 159 fl~~~~~~~~~~~~~~~f~~Yl~~GGfP~~v~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~k~i~~~l~~~~g~~~s 238 (398)
T COG1373 159 FLKLKGEEIEPSKLELLFEKYLETGGFPESVKADLSEKKLKEYLDTILKRDIIERGKIENADLMKRILRFLASNIGSPIS 238 (398)
T ss_pred HHhhcccccchhHHHHHHHHHHHhCCCcHHHhCcchhhHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHhhcCCccC
Confidence 865 5666542211 111111 112 23466666652 334455555555444 45566
Q ss_pred HHHHHHHHh
Q 041476 367 WSYAIQMLR 375 (397)
Q Consensus 367 w~~~~~~l~ 375 (397)
|..+.+.++
T Consensus 239 ~~~la~~l~ 247 (398)
T COG1373 239 YSSLARELK 247 (398)
T ss_pred HHHHHHHHh
Confidence 777666663
No 100
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.24 E-value=3.2e-05 Score=74.56 Aligned_cols=198 Identities=14% Similarity=0.179 Sum_probs=107.6
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCH
Q 041476 154 PTIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQL 220 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 220 (397)
.++.|.+..+++|.+.+.- ..++.+.++|++|+|||+||+.+++.. ...| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f-----i~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF-----IRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 3578888888887776531 245689999999999999999999986 2333 22211
Q ss_pred HHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch------------h----hhhcCCCCC-CCCCCCc
Q 041476 221 ERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI------------D----LAKMGVPFP-ASSRNAS 283 (397)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------------~----~~~l~~~l~-~~~~~gs 283 (397)
..+.... ++ .....+.+.+.......+.+|+||+++... . +..+...+- .....+.
T Consensus 213 s~l~~k~---~g----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 213 SEFVQKY---LG----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred HHHHHHh---cc----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 1111110 11 111112222222334678999999986310 0 111111100 0123456
Q ss_pred EEEEEcCChhhhh--hh---ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhH----HHHH
Q 041476 284 KIVFTTRLVDVCG--LM---EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLA----LITT 354 (397)
Q Consensus 284 ~IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa----i~~~ 354 (397)
.||.||....... .. .-+..+++...+.++...+|+..........+.+ ...+++.+.|+.-| +..-
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~sgaDI~~l~~e 361 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKISAADIAAICQE 361 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCCHHHHHHHHHH
Confidence 7888877654421 11 2345688999999998888887764433222222 45666677665433 2233
Q ss_pred HHhh--cCC---CChhHHHHHHHHH
Q 041476 355 GRAM--SSK---KTPEEWSYAIQML 374 (397)
Q Consensus 355 ~~~L--~~~---~~~~~w~~~~~~l 374 (397)
|++. +.. -+.+.+..+++..
T Consensus 362 A~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 362 AGMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred HHHHHHHcCCCccCHHHHHHHHHHH
Confidence 3332 222 2556666666554
No 101
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.21 E-value=3.7e-05 Score=75.24 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=88.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCc
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMK 254 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr 254 (397)
...+.|+|+.|+|||+|++.+++... .....+++++. ..+...+...+... . .+.++..++ +.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~~------~~f~~~~~~~l~~~---~----~~~f~~~~~-~~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVRS------ELFTEHLVSAIRSG---E----MQRFRQFYR-NV 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEeeH------HHHHHHHHHHHhcc---h----HHHHHHHcc-cC
Confidence 35788999999999999999999872 12233455542 34444554444321 1 122333333 34
Q ss_pred EEEEEecCCCchh----hhhcCCCCCC-CCCCCcEEEEEcCCh-h--------hhhhhccCceeecCCCChHhHHHHHHH
Q 041476 255 FLLLLDDIWERID----LAKMGVPFPA-SSRNASKIVFTTRLV-D--------VCGLMEAQKTFKVECLADQDAWELFQK 320 (397)
Q Consensus 255 ~LlVlDdv~~~~~----~~~l~~~l~~-~~~~gs~IlvTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 320 (397)
-+|+|||+..... .+.+... +. ....|..||+||... . ....+.....+++.+++.++...++.+
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l-~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHT-FNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHH-HHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 5888999864211 1222111 11 011345788887542 1 122334456889999999999999998
Q ss_pred HhCCccCCCCCChHHHHHHHHHHcCCch
Q 041476 321 KVGEETLESHPDIPELAQTVANECSGLP 348 (397)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (397)
.+....... .+++.+-|++.+.|.-
T Consensus 283 k~~~~~~~l---~~evl~~la~~~~~di 307 (445)
T PRK12422 283 KAEALSIRI---EETALDFLIEALSSNV 307 (445)
T ss_pred HHHHcCCCC---CHHHHHHHHHhcCCCH
Confidence 875433222 2455666777766543
No 102
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=0.0001 Score=74.34 Aligned_cols=186 Identities=15% Similarity=0.085 Sum_probs=105.1
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
..++|.+..+..|.+++..++. +.+.++|+.|+||||+|+.+...... ....+. .+++.-.....|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c-~~~~~~-------~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNC-LNPPDG-------EPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCCC-------CCCCccHHHHHHhcCCC
Confidence 4689999999999999987654 45778999999999999999877521 110000 00111111222211111
Q ss_pred cc-------cCCCHHHHHHHHHHH-----hcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEE-EEcCChhhhhh
Q 041476 233 WL-------QNRSFEEKASGIFNL-----LSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIV-FTTRLVDVCGL 297 (397)
Q Consensus 233 ~~-------~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Il-vTtR~~~v~~~ 297 (397)
.. .....++ ...+... ..++.-++|||++... ..++.+... +-.....+.+| .||....+...
T Consensus 88 ~dv~eidaas~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKt-LEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 88 MDVIEIDAASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKT-LEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCeEEeeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHH-hcCCCCCeEEEEEeCChhhCcHH
Confidence 10 0111111 1122222 1345668999999743 445555443 22222334444 45444444322
Q ss_pred -hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHH
Q 041476 298 -MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALI 352 (397)
Q Consensus 298 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 352 (397)
.+....+++.+++.++....+...+....... ..+....|++.++|.+.-+.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i---~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEY---EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 23356788999999999888887764332111 23557788889988776443
No 103
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.19 E-value=8e-05 Score=74.64 Aligned_cols=157 Identities=20% Similarity=0.121 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcE
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKF 255 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~ 255 (397)
..+.|+|..|+|||.|++.+++... ....-..+++++. .++..++...+.. .. ...+.+.+++ -=
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~-~~~~g~~V~Yita------eef~~el~~al~~---~~----~~~f~~~y~~-~D 379 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR-RLYPGTRVRYVSS------EEFTNEFINSIRD---GK----GDSFRRRYRE-MD 379 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeH------HHHHHHHHHHHHh---cc----HHHHHHHhhc-CC
Confidence 4689999999999999999999872 1111223455543 4444455444321 11 1223333332 34
Q ss_pred EEEEecCCCc---hhhh-hcCCCCCC-CCCCCcEEEEEcCChh---------hhhhhccCceeecCCCChHhHHHHHHHH
Q 041476 256 LLLLDDIWER---IDLA-KMGVPFPA-SSRNASKIVFTTRLVD---------VCGLMEAQKTFKVECLADQDAWELFQKK 321 (397)
Q Consensus 256 LlVlDdv~~~---~~~~-~l~~~l~~-~~~~gs~IlvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 321 (397)
+|+|||+... ..|. .+... +. ....|..||+||.... ....+.....+++++.+.+.-..++.++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l-~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHT-FNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHH-HHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 8899999642 2222 22211 11 1123566888887631 2344456678999999999999999998
Q ss_pred hCCccCCCCCChHHHHHHHHHHcCCchhHH
Q 041476 322 VGEETLESHPDIPELAQTVANECSGLPLAL 351 (397)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 351 (397)
+....... -+++.+-|++.+.+..-.+
T Consensus 459 a~~r~l~l---~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 459 AVQEQLNA---PPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHhcCCCC---CHHHHHHHHHhccCCHHHH
Confidence 85543222 2566777877777665444
No 104
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.19 E-value=2.5e-05 Score=82.59 Aligned_cols=179 Identities=18% Similarity=0.231 Sum_probs=97.8
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcc--CCCCC-CeEEEEEeCCcCCHHHHHHHHHHh
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLH--TPNYF-DIVIWVVVSKDMQLERIQQKIGER 230 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~--~~~~f-~~~~wv~vs~~~~~~~i~~~i~~~ 230 (397)
+.++||+++++++++.|.....+-+.++|++|+|||++|+.++..... +.... +..+|. + +...++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a----- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA----- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc-----
Confidence 347999999999999998766666779999999999999999888621 11111 234442 1 1111111
Q ss_pred hCcccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCch---------hhhhcCCCCCCCCCCCcEEEEEcCChhhhh----
Q 041476 231 IGWLQNRSFEEKASGIFNLL-SKMKFLLLLDDIWERI---------DLAKMGVPFPASSRNASKIVFTTRLVDVCG---- 296 (397)
Q Consensus 231 l~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~---- 296 (397)
+.......++....+.+.+ ..++.+|++|++.... +...+..+.+. ...-++|.+|...+...
T Consensus 249 -g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey~~~ie~ 325 (821)
T CHL00095 249 -GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEYRKHIEK 325 (821)
T ss_pred -cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHHHHHHhc
Confidence 0001112222222232222 3468999999995210 11222222121 22356666666555421
Q ss_pred ---hhccCceeecCCCChHhHHHHHHHHhCC--ccCCCCCChHHHHHHHHHHcCC
Q 041476 297 ---LMEAQKTFKVECLADQDAWELFQKKVGE--ETLESHPDIPELAQTVANECSG 346 (397)
Q Consensus 297 ---~~~~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~I~~~c~G 346 (397)
.......+.+...+.++...++...... ...... -..+....+++.++|
T Consensus 326 D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~-i~deal~~i~~ls~~ 379 (821)
T CHL00095 326 DPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLS-ISDKALEAAAKLSDQ 379 (821)
T ss_pred CHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhc
Confidence 1122356788889999988888754311 000111 123445666666654
No 105
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.19 E-value=1.3e-05 Score=77.83 Aligned_cols=196 Identities=16% Similarity=0.163 Sum_probs=107.5
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 155 TIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
++.|.+..+++|.+.+.- ...+.+.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s---- 251 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS---- 251 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc----
Confidence 467888888888776631 134578899999999999999999986 3333 222111
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch------------h----hhhcCCCCCC--CCCCCc
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI------------D----LAKMGVPFPA--SSRNAS 283 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------------~----~~~l~~~l~~--~~~~gs 283 (397)
++.. ... ..........+.....+.+++|+||+++... . +..+... +. ....+.
T Consensus 252 eL~~----k~~---Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~-Ldg~~~~~~V 323 (438)
T PTZ00361 252 ELIQ----KYL---GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQ-LDGFDSRGDV 323 (438)
T ss_pred hhhh----hhc---chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHH-HhhhcccCCe
Confidence 1111 110 0011111222222234578999999985310 0 0111111 00 123356
Q ss_pred EEEEEcCChhhhhh--h---ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchh----HHHHH
Q 041476 284 KIVFTTRLVDVCGL--M---EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPL----ALITT 354 (397)
Q Consensus 284 ~IlvTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL----ai~~~ 354 (397)
.||.||........ + .....+++...+.++..++|..++.......+.. ...++..+.|+-= ++..-
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~sgAdI~~i~~e 399 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELSGADIKAICTE 399 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCCHHHHHHHHHH
Confidence 78888876554321 1 2345789999999999999998764433222223 3455556655443 23333
Q ss_pred HHhhc--CC---CChhHHHHHHHHH
Q 041476 355 GRAMS--SK---KTPEEWSYAIQML 374 (397)
Q Consensus 355 ~~~L~--~~---~~~~~w~~~~~~l 374 (397)
|++++ .. -+.+++..+.+..
T Consensus 400 A~~~Alr~~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 400 AGLLALRERRMKVTQADFRKAKEKV 424 (438)
T ss_pred HHHHHHHhcCCccCHHHHHHHHHHH
Confidence 44432 22 2666777766654
No 106
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=0.0001 Score=75.04 Aligned_cols=190 Identities=14% Similarity=0.061 Sum_probs=106.9
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
..++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.++..... . ..+... ...+..-..++.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c-~-~~~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC-L-NSDKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC-C-CcCCCC----CCCCcccHHHHHHhcCCC
Confidence 3579999999999999987654 57889999999999999999988721 1 111000 001111122222322211
Q ss_pred cc-------cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEE-EEcCChhhhhh
Q 041476 233 WL-------QNRSFEEKASGIFNLL-----SKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIV-FTTRLVDVCGL 297 (397)
Q Consensus 233 ~~-------~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Il-vTtR~~~v~~~ 297 (397)
.. .....++..+.+ +.+ .+++-++|||+++.. ..++.+... +-.....+.+| +|+....+...
T Consensus 90 ~D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~-LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKT-LEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred ccEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHH-HhcCCcCeEEEEEeCChhhhhHH
Confidence 11 111122222211 111 245568999999753 445555443 22222334444 44443333322
Q ss_pred -hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 298 -MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 298 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
.+....+++.+++.++....+.+.+....... ..+.+..|++.++|.+..+...
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i---s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI---EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 23356788899999988887777664322111 2345788999999987655443
No 107
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.16 E-value=5.2e-05 Score=75.78 Aligned_cols=198 Identities=13% Similarity=0.090 Sum_probs=104.9
Q ss_pred ccccchhhHHHHHHHH---hc---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHH
Q 041476 155 TIVGLESTFDKVWRCL---VE---------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLER 222 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 222 (397)
+++|.+..++++.+.+ .. ...+-+.++|++|+|||+||+.+++.. ...| +.++. .+
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~~ 123 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----SD 123 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----HH
Confidence 5688877665555433 21 134568899999999999999999876 2222 22221 11
Q ss_pred HHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch------------hhh----hcCCCCC-CCCCCCcEE
Q 041476 223 IQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI------------DLA----KMGVPFP-ASSRNASKI 285 (397)
Q Consensus 223 i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------------~~~----~l~~~l~-~~~~~gs~I 285 (397)
+... .. ......+...+.......+++|+|||++... .+. .+...+- .....+..|
T Consensus 124 ~~~~----~~---g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~v 196 (495)
T TIGR01241 124 FVEM----FV---GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIV 196 (495)
T ss_pred HHHH----Hh---cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEE
Confidence 1111 00 1111222233333344578999999996421 111 1111100 012234556
Q ss_pred EEEcCChhhh-----hhhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch-hHHHHHHH---
Q 041476 286 VFTTRLVDVC-----GLMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP-LALITTGR--- 356 (397)
Q Consensus 286 lvTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~~--- 356 (397)
|.||...... +...-+..+.+...+.++-.++|..++....... ......+++.+.|+- --|..+..
T Consensus 197 I~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~----~~~l~~la~~t~G~sgadl~~l~~eA~ 272 (495)
T TIGR01241 197 IAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP----DVDLKAVARRTPGFSGADLANLLNEAA 272 (495)
T ss_pred EEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc----chhHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 6666654321 1112345788999999999999988764332111 122457888888743 33333321
Q ss_pred hh--cCC---CChhHHHHHHHHHh
Q 041476 357 AM--SSK---KTPEEWSYAIQMLR 375 (397)
Q Consensus 357 ~L--~~~---~~~~~w~~~~~~l~ 375 (397)
+. +.+ -+.+..+.+++...
T Consensus 273 ~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 273 LLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHh
Confidence 11 112 36667777666543
No 108
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.15 E-value=3.9e-05 Score=81.44 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=87.9
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC----CCeEEEEEeCCcCCHHHHHHHHHHh
Q 041476 155 TIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNY----FDIVIWVVVSKDMQLERIQQKIGER 230 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~~i~~~i~~~ 230 (397)
.++||+.++.+++..|.......+.++|++|+|||++|+.+..... .... .+..+|.- ++..++..
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~~p~~l~~~~~~~l-----~~~~l~a~---- 243 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV-NGDVPESLKNKRLLAL-----DMGALIAG---- 243 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh-ccCCchhhcCCeEEEe-----eHHHHhhc----
Confidence 4799999999999999876666777999999999999999988862 1111 12233321 11111100
Q ss_pred hCcccCCCHHHHHHHHHHHhc--CCcEEEEEecCCCch---------hhhhcCCCCCCCCCCCcEEEEEcCChhhhh---
Q 041476 231 IGWLQNRSFEEKASGIFNLLS--KMKFLLLLDDIWERI---------DLAKMGVPFPASSRNASKIVFTTRLVDVCG--- 296 (397)
Q Consensus 231 l~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~--- 296 (397)
.......+.....+...+. +++.+|++|++.... +...+..+.+ ....-++|-+|...+...
T Consensus 244 --~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r~~~~ 319 (852)
T TIGR03346 244 --AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYRKYIE 319 (852)
T ss_pred --chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHHHHhh
Confidence 0001122222223333332 468999999996321 1122222212 122345565555554311
Q ss_pred ----hhccCceeecCCCChHhHHHHHHHHh
Q 041476 297 ----LMEAQKTFKVECLADQDAWELFQKKV 322 (397)
Q Consensus 297 ----~~~~~~~~~l~~L~~~~~~~Lf~~~~ 322 (397)
.......+.+...+.++...++....
T Consensus 320 ~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 320 KDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 11223468899999999999887653
No 109
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00025 Score=62.59 Aligned_cols=178 Identities=14% Similarity=0.154 Sum_probs=106.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe-CCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHH--
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVV-SKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNL-- 249 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~v-s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~-- 249 (397)
++-+++.++|.-|+|||.+.+.+.... ..-+... +.+ .+..+...+...|+..+...+..........+.+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~----~~d~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASL----NEDQVAV-VVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhc----CCCceEE-EEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 455799999999999999999655554 1111222 333 34557788888898888875444444444443333
Q ss_pred --h-cCCc-EEEEEecCCCc--hhhhhcCCCC--CCCCCCCcEEEEEcCCh-------hhhhhhc--cCceeecCCCChH
Q 041476 250 --L-SKMK-FLLLLDDIWER--IDLAKMGVPF--PASSRNASKIVFTTRLV-------DVCGLME--AQKTFKVECLADQ 312 (397)
Q Consensus 250 --L-~~kr-~LlVlDdv~~~--~~~~~l~~~l--~~~~~~gs~IlvTtR~~-------~v~~~~~--~~~~~~l~~L~~~ 312 (397)
. +++| ..+++||.... ...+.++... -......-+|+..-..+ .+..... ..-.|++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 3 4677 89999998642 3333332110 11111112233322211 0111111 1223899999999
Q ss_pred hHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 313 DAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 313 ~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
+...++..+......+.+--..+....|.....|.|.+|..++
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 9999998887655423333345567889999999999998765
No 110
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=5.4e-05 Score=69.72 Aligned_cols=194 Identities=20% Similarity=0.254 Sum_probs=116.7
Q ss_pred cccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHH
Q 041476 156 IVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLER 222 (397)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 222 (397)
+=|-++.+++|.+.+.- +.++-|.++|++|.|||-||+.|+++. ...| +.+... +
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS----E 220 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS----E 220 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH----H
Confidence 44677778877776531 367789999999999999999999986 3333 333322 1
Q ss_pred HHHHHHHhhCcccCCCHHHHHHHHHHHhc-CCcEEEEEecCCCc-------------h-------hhhhcCCCCCCCCCC
Q 041476 223 IQQKIGERIGWLQNRSFEEKASGIFNLLS-KMKFLLLLDDIWER-------------I-------DLAKMGVPFPASSRN 281 (397)
Q Consensus 223 i~~~i~~~l~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~-------------~-------~~~~l~~~l~~~~~~ 281 (397)
+.+.- ++ .-..+...+.+.-+ ..+++|++|+++.. + -+.++... +...
T Consensus 221 lVqKY---iG-----EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF---D~~~ 289 (406)
T COG1222 221 LVQKY---IG-----EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF---DPRG 289 (406)
T ss_pred HHHHH---hc-----cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC---CCCC
Confidence 11111 11 12334444555444 46899999998730 0 01222111 2345
Q ss_pred CcEEEEEcCChhhhh-----hhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch----hHHH
Q 041476 282 ASKIVFTTRLVDVCG-----LMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP----LALI 352 (397)
Q Consensus 282 gs~IlvTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP----Lai~ 352 (397)
..|||..|...++.. .-.-+..+++..-+.+.-.++|+-+........+-++ +.+++.|.|+- -|+.
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAIC 365 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHHH
Confidence 678998887666532 2223567888866677777888877765443333444 55666666654 4566
Q ss_pred HHHHhhcCC-----CChhHHHHHHHHHhc
Q 041476 353 TTGRAMSSK-----KTPEEWSYAIQMLRR 376 (397)
Q Consensus 353 ~~~~~L~~~-----~~~~~w~~~~~~l~~ 376 (397)
+=|++++-+ -+.+....+.+..-.
T Consensus 366 tEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 366 TEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 667776532 256677776666544
No 111
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.12 E-value=3.1e-05 Score=81.97 Aligned_cols=155 Identities=19% Similarity=0.227 Sum_probs=86.4
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccC--CCC-CCeE-EEEEeCCcCCHHHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHT--PNY-FDIV-IWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~--~~~-f~~~-~wv~vs~~~~~~~i~~~i~~ 229 (397)
+.++||+.++.++++.|.......+.++|++|+|||++|+.+....... ... .+.. +++..+. ++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~ag--- 248 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVAG--- 248 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhhc---
Confidence 3579999999999999987766677799999999999999999886210 011 1222 2222221 1100
Q ss_pred hhCcccCCCHHHHHHHHHHHh--cCCcEEEEEecCCCch---------hhhhcCCCCCCCCCCCcEEEEEcCChhhhh--
Q 041476 230 RIGWLQNRSFEEKASGIFNLL--SKMKFLLLLDDIWERI---------DLAKMGVPFPASSRNASKIVFTTRLVDVCG-- 296 (397)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~-- 296 (397)
. ......+.....+.+.+ .+++.+|++|++.... +-..+..+.+. ...-++|-+|...+...
T Consensus 249 -~--~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaTt~~e~r~~~ 323 (857)
T PRK10865 249 -A--KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYI 323 (857)
T ss_pred -c--chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcCCCHHHHHHh
Confidence 0 00011122222222222 2468999999996421 12223223132 22346665555554311
Q ss_pred -----hhccCceeecCCCChHhHHHHHHHHh
Q 041476 297 -----LMEAQKTFKVECLADQDAWELFQKKV 322 (397)
Q Consensus 297 -----~~~~~~~~~l~~L~~~~~~~Lf~~~~ 322 (397)
.......+.+...+.++...+++...
T Consensus 324 ~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 324 EKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred hhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 11122356677778888888886554
No 112
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.12 E-value=3.7e-05 Score=75.91 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=88.0
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCC---CCCCeEEEEEeCCcC
Q 041476 155 TIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTP---NYFDIVIWVVVSKDM 218 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~ 218 (397)
++.|.+..+++|.+.+.- ..++-+.++|++|+|||++|+.+++... .. ..+....|+.+...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~-~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA-QRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc-cccccccCCceeEEeccch-
Confidence 467899988888887531 1356789999999999999999999872 11 11223445554432
Q ss_pred CHHHHHHHHHHhhCcccCCCHHHHHHHHHHH-hcCCcEEEEEecCCCc---------hh-----hhhcCCCCCC--CCCC
Q 041476 219 QLERIQQKIGERIGWLQNRSFEEKASGIFNL-LSKMKFLLLLDDIWER---------ID-----LAKMGVPFPA--SSRN 281 (397)
Q Consensus 219 ~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~---------~~-----~~~l~~~l~~--~~~~ 281 (397)
+++.. .............+..++. -.+++++|+||+++.. .+ ...+... +. ....
T Consensus 261 ---eLl~k----yvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~-LDgl~~~~ 332 (512)
T TIGR03689 261 ---ELLNK----YVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE-LDGVESLD 332 (512)
T ss_pred ---hhccc----ccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH-hcccccCC
Confidence 11110 0000000011111112221 1357899999999742 11 1122211 11 1113
Q ss_pred CcEEEEEcCChhhhh--hh---ccCceeecCCCChHhHHHHHHHHhC
Q 041476 282 ASKIVFTTRLVDVCG--LM---EAQKTFKVECLADQDAWELFQKKVG 323 (397)
Q Consensus 282 gs~IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~~~ 323 (397)
+..||.||....... .. .-+..|++...+.++..++|.+++.
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 445555665444321 11 2345689999999999999998864
No 113
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.00012 Score=74.18 Aligned_cols=188 Identities=13% Similarity=0.086 Sum_probs=103.9
Q ss_pred CccccchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
.+++|.+..+..|.+++..++.. .+.++|+.|+||||+|+.+++.... ...... ..+..-.....|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCCC-------CCCCccHHHHHHhcCCC
Confidence 35899999999999999887654 5689999999999999999887621 110000 00000011111110000
Q ss_pred c-------ccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEE-EEcCChhhhhh
Q 041476 233 W-------LQNRSFEEKASGIFNLL-----SKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIV-FTTRLVDVCGL 297 (397)
Q Consensus 233 ~-------~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Il-vTtR~~~v~~~ 297 (397)
. ......++ ++.+.+.+ .+++-++|||++... ...+.+... +-.....+.+| +||....+...
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~-LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKT-LEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHH-HHcCCCCeEEEEEeCChhhhhHH
Confidence 0 00011111 11222222 244558999999643 344544433 22222345555 55554545332
Q ss_pred -hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch-hHHHHH
Q 041476 298 -MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP-LALITT 354 (397)
Q Consensus 298 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~ 354 (397)
.+....+++.+++.++....+...+....... ..+....|++.++|.. .++..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i---~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI---SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 23456889999999998888877664332111 2445678888888865 444444
No 114
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.00021 Score=66.81 Aligned_cols=192 Identities=15% Similarity=0.139 Sum_probs=108.6
Q ss_pred ccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccC-------------CCCCCeEEEEEeCCcCCH
Q 041476 155 TIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHT-------------PNYFDIVIWVVVSKDMQL 220 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~-------------~~~f~~~~wv~vs~~~~~ 220 (397)
.++|.+..++.+...+..+.. +...++|+.|+||+++|..+.+..... ..|.| ..|+.-.....-
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~g 83 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQG 83 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccccc
Confidence 579999999999999988764 789999999999999998887775211 11222 234432100000
Q ss_pred HHHHHHHHHhhCc--c--cCCCHHHHHHHHHHHhc-----CCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEc
Q 041476 221 ERIQQKIGERIGW--L--QNRSFEEKASGIFNLLS-----KMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTT 289 (397)
Q Consensus 221 ~~i~~~i~~~l~~--~--~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTt 289 (397)
..+-..-+...+. . .....++ ++.+.+.+. +++-++|+|+++.. ...+.+... +-.-.+..-|++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~-LEEPp~~~fILi~~ 161 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKT-LEEPGNGTLILIAP 161 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHH-HhCCCCCeEEEEEC
Confidence 0000011111110 0 1112222 233444443 45679999999753 334444332 11111234455555
Q ss_pred CChhhhhh-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 290 RLVDVCGL-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 290 R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
....+... .+-...+++.++++++..+.+.+...... .......++..++|.|..+....
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHHH
Confidence 44444332 23456899999999999999988643211 11124678899999997665443
No 115
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.08 E-value=2.1e-05 Score=81.61 Aligned_cols=155 Identities=15% Similarity=0.258 Sum_probs=89.3
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC---CCeEEEEEeCCcCCHHHHHHHHHHhh
Q 041476 155 TIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNY---FDIVIWVVVSKDMQLERIQQKIGERI 231 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~~~~~~i~~~i~~~l 231 (397)
.++||+.++.++++.|......-+.++|++|+|||++|+.++......... .++.+|.. ++..++.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~lla------ 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLLA------ 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHhc------
Confidence 479999999999999887555566789999999999999999875211111 23444421 1111110
Q ss_pred CcccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCc----------hhhhhcCCCCCCCCCCCcEEEEEcCChhhhh----
Q 041476 232 GWLQNRSFEEKASGIFNLL-SKMKFLLLLDDIWER----------IDLAKMGVPFPASSRNASKIVFTTRLVDVCG---- 296 (397)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~----------~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~---- 296 (397)
+.....+.+.....+...+ +.++.+|+||++... .+...+..+++. ...-++|-+|...+...
T Consensus 256 G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~~~~~~ 333 (758)
T PRK11034 256 GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEK 333 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHHHHhhc
Confidence 0000112222333333333 346789999999631 112222222122 22345665555444311
Q ss_pred ---hhccCceeecCCCChHhHHHHHHHHh
Q 041476 297 ---LMEAQKTFKVECLADQDAWELFQKKV 322 (397)
Q Consensus 297 ---~~~~~~~~~l~~L~~~~~~~Lf~~~~ 322 (397)
...-...+.+++++.++..+++....
T Consensus 334 D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 334 DRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11223579999999999999988643
No 116
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.07 E-value=0.00046 Score=72.75 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=83.8
Q ss_pred CccccchhhHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVE------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKI 227 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i 227 (397)
..++|.+..++.|.+++.. .+.+++.++|++|+|||++|+.+++.. ...|-. ++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l---~~~~~~---i~~~~~~~~~~i~g~- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL---NRKFVR---FSLGGVRDEAEIRGH- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh---cCCeEE---EeCCCcccHHHHcCC-
Confidence 3468999999998887642 134589999999999999999999987 233321 222322232222110
Q ss_pred HHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch---------hhhhcC-----CCCCCCC-------CCCcEEE
Q 041476 228 GERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI---------DLAKMG-----VPFPASS-------RNASKIV 286 (397)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---------~~~~l~-----~~l~~~~-------~~gs~Il 286 (397)
-............+.+...- .++-+|+||+++... .+-.+. .. +.+. ..+.-+|
T Consensus 393 ---~~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~-f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ---RRTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNA-FSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ---CCceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCc-cccccCCceeccCCEEEE
Confidence 00001111122223333332 233488999996421 111111 01 1111 1233444
Q ss_pred EEcCChhh--hhhhccCceeecCCCChHhHHHHHHHHh
Q 041476 287 FTTRLVDV--CGLMEAQKTFKVECLADQDAWELFQKKV 322 (397)
Q Consensus 287 vTtR~~~v--~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 322 (397)
.||..... .........+++.+++.++-.+++.++.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 55554322 1222333578999999999888887654
No 117
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.05 E-value=7.5e-05 Score=64.70 Aligned_cols=45 Identities=29% Similarity=0.372 Sum_probs=41.4
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 155 TIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++||-++.++++.-...+++.+-+.|.||+|+||||-+..+++..
T Consensus 28 dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 579999999999888888999999999999999999999988887
No 118
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.99 E-value=4.5e-05 Score=70.72 Aligned_cols=163 Identities=15% Similarity=0.186 Sum_probs=102.3
Q ss_pred CCccccchhhHHHHHHHHhcCC---ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 041476 153 QPTIVGLESTFDKVWRCLVEGQ---FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~ 229 (397)
.+.|.+|+.++..+..++.+.. ++.|.|+|.+|.|||.+.+++.+.. .. ..+|+++-+.++...++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHH
Confidence 3568899999999999987643 3466899999999999999999886 12 3589999999999999999999
Q ss_pred hhCcc--cC-------CCHHHHHHHHHH--Hh--cCCcEEEEEecCCCchhhhhcCCCC----C-CCCCCCcEEEEEcCC
Q 041476 230 RIGWL--QN-------RSFEEKASGIFN--LL--SKMKFLLLLDDIWERIDLAKMGVPF----P-ASSRNASKIVFTTRL 291 (397)
Q Consensus 230 ~l~~~--~~-------~~~~~~~~~l~~--~L--~~kr~LlVlDdv~~~~~~~~l~~~l----~-~~~~~gs~IlvTtR~ 291 (397)
+.+.. .. .+..+....+.+ .. +++.++||||+++...+.+.+..+. . ..+.+...|++..-.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 98522 11 111122222333 11 1468999999997654443321100 0 011223334433322
Q ss_pred hhh--hhhhccCc--eeecCCCChHhHHHHHHHH
Q 041476 292 VDV--CGLMEAQK--TFKVECLADQDAWELFQKK 321 (397)
Q Consensus 292 ~~v--~~~~~~~~--~~~l~~L~~~~~~~Lf~~~ 321 (397)
-+- ...++... ++....-+.++...++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 221 12233333 4566777788877777543
No 119
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.98 E-value=2.7e-05 Score=62.88 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999997
No 120
>CHL00176 ftsH cell division protein; Validated
Probab=97.97 E-value=0.00028 Score=71.97 Aligned_cols=198 Identities=15% Similarity=0.128 Sum_probs=106.7
Q ss_pred CccccchhhHHHHHH---HHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWR---CLVEG---------QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~---~L~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
.++.|.++.++++.+ .+... ..+-+.++|++|+|||+||+.+++.. ... |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----
Confidence 356787765555444 44331 24578999999999999999999876 222 2333211
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc------------hh----hhhcCCCCC-CCCCCCcE
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER------------ID----LAKMGVPFP-ASSRNASK 284 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------------~~----~~~l~~~l~-~~~~~gs~ 284 (397)
++... .. ..........+.......+++|+|||++.. .. +..+...+- .....+..
T Consensus 251 ~f~~~----~~---g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 251 EFVEM----FV---GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHHHH----hh---hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 11110 00 011122223344444578899999999632 11 222221100 11234556
Q ss_pred EEEEcCChhhhh--hh---ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch-hHHHHHHH--
Q 041476 285 IVFTTRLVDVCG--LM---EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP-LALITTGR-- 356 (397)
Q Consensus 285 IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~~-- 356 (397)
||.||....... .. .-+..+.+...+.++-.++++.++.... .........+++.+.|.. --|..+..
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~----~~~d~~l~~lA~~t~G~sgaDL~~lvneA 399 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK----LSPDVSLELIARRTPGFSGADLANLLNEA 399 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc----cchhHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 777776644322 11 2346788999999999999988875422 111234577888888833 22222221
Q ss_pred -hh--c-CC--CChhHHHHHHHHH
Q 041476 357 -AM--S-SK--KTPEEWSYAIQML 374 (397)
Q Consensus 357 -~L--~-~~--~~~~~w~~~~~~l 374 (397)
++ + .+ -+.++.+.+++..
T Consensus 400 al~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 400 AILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHH
Confidence 11 1 11 3566677766654
No 121
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00036 Score=65.64 Aligned_cols=154 Identities=9% Similarity=0.076 Sum_probs=86.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCC-------------------CCCCeEEEEEeCCcCCHHHHHHHHHHhhCccc
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTP-------------------NYFDIVIWVVVSKDMQLERIQQKIGERIGWLQ 235 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 235 (397)
..-+.++|+.|+|||++|..++....... .|.| ..|+.-.... .
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~----------------~ 84 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEAD----------------K 84 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCC----------------C
Confidence 45688999999999999999888763111 1111 1222110000 0
Q ss_pred CCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCChh-hhhh-hccCceeec
Q 041476 236 NRSFEEKASGIFNLL-----SKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLVD-VCGL-MEAQKTFKV 306 (397)
Q Consensus 236 ~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~~-v~~~-~~~~~~~~l 306 (397)
....++..+ +.+.+ .+++-++|||+++.. ...+.+... +-.-..++.+|++|.+.. +... .+-...+.+
T Consensus 85 ~i~id~iR~-l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~-LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 85 TIKVDQVRE-LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKS-LEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred CCCHHHHHH-HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHH-HhCCCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 112222222 22222 234456678999753 344444333 222223566666666654 3322 234568999
Q ss_pred CCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 307 ECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 307 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
.+++.++..+.+...... ...+.+..++..++|.|+.+..+
T Consensus 163 ~~~~~~~~~~~L~~~~~~-------~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 163 PLPSNEESLQWLQQALPE-------SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCcCHHHHHHHHHHhccc-------CChHHHHHHHHHcCCCHHHHHHH
Confidence 999999999988765311 11233567789999999755433
No 122
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.94 E-value=5.2e-05 Score=61.45 Aligned_cols=87 Identities=23% Similarity=0.082 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-cCCCHHHHHHHHHHHhcCC
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-QNRSFEEKASGIFNLLSKM 253 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-~~~~~~~~~~~l~~~L~~k 253 (397)
...+.|+|++|+||||+++.++.... .....++++..+........... ....... ...........+....+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999999872 22234555554433221111111 0011111 1222233333444444443
Q ss_pred -cEEEEEecCCCc
Q 041476 254 -KFLLLLDDIWER 265 (397)
Q Consensus 254 -r~LlVlDdv~~~ 265 (397)
..+|++|++...
T Consensus 78 ~~~viiiDei~~~ 90 (148)
T smart00382 78 KPDVLILDEITSL 90 (148)
T ss_pred CCCEEEEECCccc
Confidence 489999999864
No 123
>PRK08116 hypothetical protein; Validated
Probab=97.94 E-value=1.8e-05 Score=72.25 Aligned_cols=102 Identities=25% Similarity=0.240 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcE
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKF 255 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~ 255 (397)
..+.++|.+|+|||.||..+++... .....+++++ ..+++..+..........+.. .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~~~~~~~----~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSSGKEDEN----EIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhccccccHH----HHHHHhcCCC-
Confidence 4588999999999999999999983 2233455654 355666665554322111222 2333344333
Q ss_pred EEEEecCC--Cchhhhh--cCCCCCC-CCCCCcEEEEEcCCh
Q 041476 256 LLLLDDIW--ERIDLAK--MGVPFPA-SSRNASKIVFTTRLV 292 (397)
Q Consensus 256 LlVlDdv~--~~~~~~~--l~~~l~~-~~~~gs~IlvTtR~~ 292 (397)
||||||+. ...+|.. +... +. ....+..+|+||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~i-in~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNI-IDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHH-HHHHHHCCCCEEEECCCC
Confidence 89999994 2334432 2211 11 112456688888754
No 124
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.93 E-value=5.7e-05 Score=76.53 Aligned_cols=199 Identities=14% Similarity=0.140 Sum_probs=103.4
Q ss_pred CccccchhhHHHHHHHHhcC-----CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC---cCCHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVEG-----QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK---DMQLERIQQ 225 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~i~~ 225 (397)
..++|.++.+.++..++... ..+++.|+|++|+||||+++.++.... ++..-|++-.. ..+...+..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~-----~~~~Ew~npv~~~~~~~~~~~~~ 158 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG-----IQVQEWSNPTLPDFQKNDHKVTL 158 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh-----hHHHHHhhhhhhcccccccccch
Confidence 35799999999999998753 235699999999999999999988751 22223321100 001111112
Q ss_pred HHHHhhCcc--cCCCHHHHHHHHHH---H----hcCCcEEEEEecCCCc-----hhhhhcCC-CCCCCCCCCcEEEEEcC
Q 041476 226 KIGERIGWL--QNRSFEEKASGIFN---L----LSKMKFLLLLDDIWER-----IDLAKMGV-PFPASSRNASKIVFTTR 290 (397)
Q Consensus 226 ~i~~~l~~~--~~~~~~~~~~~l~~---~----L~~kr~LlVlDdv~~~-----~~~~~l~~-~l~~~~~~gs~IlvTtR 290 (397)
.+.+++... .............. . ..+++.+|+|||+.+. ..+..+.. . ....+.-.-|+++|-
T Consensus 159 s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~-~~e~~~~pLI~I~TE 237 (637)
T TIGR00602 159 SLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWK-YVSIGRCPLVFIITE 237 (637)
T ss_pred hhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHH-hhcCCCceEEEEecC
Confidence 222222211 00111111111111 1 1346789999999542 23444433 2 222222234555553
Q ss_pred Chh---------hh-------hhhc--cCceeecCCCChHhHHHHHHHHhCCccCCC-CC---ChHHHHHHHHHHcCCch
Q 041476 291 LVD---------VC-------GLME--AQKTFKVECLADQDAWELFQKKVGEETLES-HP---DIPELAQTVANECSGLP 348 (397)
Q Consensus 291 ~~~---------v~-------~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~-~~---~~~~~~~~I~~~c~GlP 348 (397)
+.. .. .... ....|.+.|++..+-.+.+.+.+....... .. ...+..+.|+..++|--
T Consensus 238 ~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDi 317 (637)
T TIGR00602 238 SLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDI 317 (637)
T ss_pred CccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChH
Confidence 211 00 1111 223589999999997777777664321111 11 12356778888888865
Q ss_pred hHHHHHHHhh
Q 041476 349 LALITTGRAM 358 (397)
Q Consensus 349 Lai~~~~~~L 358 (397)
-.+.....++
T Consensus 318 RsAIn~LQf~ 327 (637)
T TIGR00602 318 RSAINSLQFS 327 (637)
T ss_pred HHHHHHHHHH
Confidence 5544444444
No 125
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00042 Score=65.40 Aligned_cols=145 Identities=7% Similarity=0.040 Sum_probs=83.9
Q ss_pred cccc-chhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCC-------------------CCCCeEEEEE
Q 041476 155 TIVG-LESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTP-------------------NYFDIVIWVV 213 (397)
Q Consensus 155 ~~vG-r~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~ 213 (397)
.++| .+..++.+...+..++.+ ...++|+.|+||||+|+.+.+...... .|.|......
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 4567 677778888888776654 569999999999999999987752110 0222211111
Q ss_pred eCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHH-----hcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEE
Q 041476 214 VSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNL-----LSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIV 286 (397)
Q Consensus 214 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Il 286 (397)
-+.. ...++..+ +.+. ..+.+=++|+|++... ...+.+... +-....++.+|
T Consensus 86 ~~~~-------------------i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~-LEEPp~~~~~I 144 (329)
T PRK08058 86 DGQS-------------------IKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKF-LEEPSGGTTAI 144 (329)
T ss_pred cccc-------------------CCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHH-hcCCCCCceEE
Confidence 1111 11222222 2222 2345568999998643 334444333 22223456666
Q ss_pred EEcCChh-hhhh-hccCceeecCCCChHhHHHHHHH
Q 041476 287 FTTRLVD-VCGL-MEAQKTFKVECLADQDAWELFQK 320 (397)
Q Consensus 287 vTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~ 320 (397)
++|.+.. +... .+....+++.+++.++..+.+.+
T Consensus 145 l~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 145 LLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 6665543 3322 23456899999999998887765
No 126
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.92 E-value=0.0001 Score=70.27 Aligned_cols=140 Identities=20% Similarity=0.146 Sum_probs=85.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKM 253 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~k 253 (397)
....+.|+|+.|.|||.|++.+.+.. .........+.++ .......++..+.. .-.+..++.. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~----se~f~~~~v~a~~~-------~~~~~Fk~~y--~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLT----SEDFTNDFVKALRD-------NEMEKFKEKY--S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEecc----HHHHHHHHHHHHHh-------hhHHHHHHhh--c
Confidence 36799999999999999999999998 3334422233332 23333344333321 2233444444 3
Q ss_pred cEEEEEecCCCc---hhhh-hcCCCCCC-CCCCCcEEEEEcCChh---------hhhhhccCceeecCCCChHhHHHHHH
Q 041476 254 KFLLLLDDIWER---IDLA-KMGVPFPA-SSRNASKIVFTTRLVD---------VCGLMEAQKTFKVECLADQDAWELFQ 319 (397)
Q Consensus 254 r~LlVlDdv~~~---~~~~-~l~~~l~~-~~~~gs~IlvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~ 319 (397)
-=++++||++-. ..|+ .+... +. -...|..||+|++... ....+...-.+++.+++.+....++.
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~-FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHT-FNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHH-HHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 348999999742 2222 22111 11 1123448999986533 24455667899999999999999999
Q ss_pred HHhCCccCCCC
Q 041476 320 KKVGEETLESH 330 (397)
Q Consensus 320 ~~~~~~~~~~~ 330 (397)
+++.......+
T Consensus 255 kka~~~~~~i~ 265 (408)
T COG0593 255 KKAEDRGIEIP 265 (408)
T ss_pred HHHHhcCCCCC
Confidence 98755443333
No 127
>PRK10536 hypothetical protein; Provisional
Probab=97.90 E-value=0.00026 Score=63.28 Aligned_cols=133 Identities=11% Similarity=0.104 Sum_probs=74.2
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe----CC-----cCCHHHH--
Q 041476 155 TIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVV----SK-----DMQLERI-- 223 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~v----s~-----~~~~~~i-- 223 (397)
.+.++......++.++.+. .++.+.|++|+|||+||..+..+... .+.|+.++-..- ++ +-+..+-
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~-~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALI-HKDVDRIIVTRPVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHh-cCCeeEEEEeCCCCCchhhhCcCCCCHHHHHH
Confidence 3577888888899988753 59999999999999999998886411 234554443321 11 0122211
Q ss_pred --HHHHHHhhCcc-cCCCHHHHHH--------HHHHHhcCCcE---EEEEecCCCch--hhhhcCCCCCCCCCCCcEEEE
Q 041476 224 --QQKIGERIGWL-QNRSFEEKAS--------GIFNLLSKMKF---LLLLDDIWERI--DLAKMGVPFPASSRNASKIVF 287 (397)
Q Consensus 224 --~~~i~~~l~~~-~~~~~~~~~~--------~l~~~L~~kr~---LlVlDdv~~~~--~~~~l~~~l~~~~~~gs~Ilv 287 (397)
+.-+...+..- .......... .--.+++|..+ +||+|+..+.. ....+ +...+.+|++|+
T Consensus 133 p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~----ltR~g~~sk~v~ 208 (262)
T PRK10536 133 PYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMF----LTRLGENVTVIV 208 (262)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHH----HhhcCCCCEEEE
Confidence 22222222110 0000111100 00235566554 99999997643 33333 334567899999
Q ss_pred EcCChhh
Q 041476 288 TTRLVDV 294 (397)
Q Consensus 288 TtR~~~v 294 (397)
|--..++
T Consensus 209 ~GD~~Qi 215 (262)
T PRK10536 209 NGDITQC 215 (262)
T ss_pred eCChhhc
Confidence 8665443
No 128
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.90 E-value=0.00052 Score=60.72 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=38.2
Q ss_pred CccccchhhHHHHHHHHh----cCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLV----EGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.++|.+..++.|++-.. .....-+.++|..|+|||+|++.+.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 568999999988877532 2355678899999999999999999988
No 129
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.87 E-value=0.00048 Score=65.66 Aligned_cols=194 Identities=15% Similarity=0.193 Sum_probs=120.8
Q ss_pred chhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHH-HHHHhhhccCCCCCCeEEEEEeCCc---CCHHHHHHHHHHhhCcc
Q 041476 159 LESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLL-AQINNKFLHTPNYFDIVIWVVVSKD---MQLERIQQKIGERIGWL 234 (397)
Q Consensus 159 r~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa-~~v~~~~~~~~~~f~~~~wv~vs~~---~~~~~i~~~i~~~l~~~ 234 (397)
|.+.+++|..||.+..-..|.|.||-|+||+.|+ .++.++. + + +..+.|.+- -+-..++..++.+++.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-~--~----vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-K--N----VLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-C--C----EEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999888889999999999999999 7776664 1 1 555554321 22334444454444321
Q ss_pred --------------------------cCCCHH-HHHHHH-------HH-------------------Hhc---CCcEEEE
Q 041476 235 --------------------------QNRSFE-EKASGI-------FN-------------------LLS---KMKFLLL 258 (397)
Q Consensus 235 --------------------------~~~~~~-~~~~~l-------~~-------------------~L~---~kr~LlV 258 (397)
-+.+.+ ++...| ++ +|. .++-+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 011221 221111 11 011 1256999
Q ss_pred EecCCCc-----------hhhhhcCCCCCCCCCCCcEEEEEcCChhhhh----hhc--cCceeecCCCChHhHHHHHHHH
Q 041476 259 LDDIWER-----------IDLAKMGVPFPASSRNASKIVFTTRLVDVCG----LME--AQKTFKVECLADQDAWELFQKK 321 (397)
Q Consensus 259 lDdv~~~-----------~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~----~~~--~~~~~~l~~L~~~~~~~Lf~~~ 321 (397)
||++-.. .+|... +. ..+-.+||+.|-+..... .++ ....+.|...+.+.|.++...+
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~----Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS----LV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH----HH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 9998542 234332 21 233467888887766543 222 2357889999999999999998
Q ss_pred hCCccCC------------CC-----CChHHHHHHHHHHcCCchhHHHHHHHhhcCCCCh
Q 041476 322 VGEETLE------------SH-----PDIPELAQTVANECSGLPLALITTGRAMSSKKTP 364 (397)
Q Consensus 322 ~~~~~~~------------~~-----~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~ 364 (397)
+...... .+ .....-.+..++..||=-.=+..+++.++...++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 8543100 00 1244456788899999999999999999876443
No 130
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0021 Score=64.58 Aligned_cols=157 Identities=19% Similarity=0.247 Sum_probs=88.0
Q ss_pred ccccchhhHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 155 TIVGLESTFDKVWRCLVE------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
+-+|.++.+++|++.|.- -+-++++++||+|+|||+|++.+++.. ...|- -++++.--+..+|-..=-
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkfv---R~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFV---RISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEE---EEecCccccHHHhccccc
Confidence 449999999999999852 245799999999999999999999987 33332 123333222222110000
Q ss_pred HhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc---------hhhhhcCCC---------CCCCCCCCcEEE-EEc
Q 041476 229 ERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER---------IDLAKMGVP---------FPASSRNASKIV-FTT 289 (397)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---------~~~~~l~~~---------l~~~~~~gs~Il-vTt 289 (397)
..+ .++. ...++.+ ...+.++-+++||+++.. ..+-++..+ ++-..--=|+|+ |+|
T Consensus 398 TYI---GamP-GrIiQ~m-kka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaT 472 (782)
T COG0466 398 TYI---GAMP-GKIIQGM-KKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIAT 472 (782)
T ss_pred ccc---ccCC-hHHHHHH-HHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEee
Confidence 000 1111 1111112 223457789999999731 111111111 010000113443 344
Q ss_pred C-Chh-h-hhhhccCceeecCCCChHhHHHHHHHHh
Q 041476 290 R-LVD-V-CGLMEAQKTFKVECLADQDAWELFQKKV 322 (397)
Q Consensus 290 R-~~~-v-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 322 (397)
- +-+ + +..+....+|++.+-+++|-.++-++++
T Consensus 473 ANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 473 ANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3 333 2 3455566899999999999998887775
No 131
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.85 E-value=0.00019 Score=70.94 Aligned_cols=172 Identities=15% Similarity=0.092 Sum_probs=90.5
Q ss_pred ccccchhhHHHHHHHH---hc-------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHH
Q 041476 155 TIVGLESTFDKVWRCL---VE-------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQ 224 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L---~~-------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~ 224 (397)
++.|.+..++.+.... .. ..++-|.++|++|+|||.+|+.+++.. ...| +-+..+ .+.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l~ 296 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KLF 296 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hhc
Confidence 4667665555544321 11 245678999999999999999999987 2222 111111 111
Q ss_pred HHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch----h----------hhhcCCCCCCCCCCCcEEEEEcC
Q 041476 225 QKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI----D----------LAKMGVPFPASSRNASKIVFTTR 290 (397)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----~----------~~~l~~~l~~~~~~gs~IlvTtR 290 (397)
. .. ...+...+.+.+...-...+++|+||+++... . ...+... +.....+.-||.||.
T Consensus 297 ~----~~---vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~-l~~~~~~V~vIaTTN 368 (489)
T CHL00195 297 G----GI---VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITW-LSEKKSPVFVVATAN 368 (489)
T ss_pred c----cc---cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHH-HhcCCCceEEEEecC
Confidence 1 00 01111122222222223578999999996310 0 0111111 112233445666776
Q ss_pred Chhhh-----hhhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch
Q 041476 291 LVDVC-----GLMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP 348 (397)
Q Consensus 291 ~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (397)
..... +...-+..+.+...+.++-.++|+.+.......... ....+.+++.+.|+-
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 55431 111245678899889999999999887543211111 112466777777654
No 132
>PRK08118 topology modulation protein; Reviewed
Probab=97.85 E-value=1.1e-05 Score=68.41 Aligned_cols=36 Identities=36% Similarity=0.556 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEE
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIW 211 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~w 211 (397)
+-|.|+|++|+||||||+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999997322356777776
No 133
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00052 Score=67.42 Aligned_cols=168 Identities=15% Similarity=0.146 Sum_probs=94.5
Q ss_pred ccccchhhHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHH
Q 041476 155 TIVGLESTFDKVWRCLVE------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLER 222 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 222 (397)
++=|.+..+.++.+++.. ..++-|.++||+|+|||.||+.++++. . - -++.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~--v-----Pf~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-G--V-----PFLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-C--C-----ceEeecch-----
Confidence 456788888888877642 256788999999999999999999998 2 2 23333332
Q ss_pred HHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--------hh------------hhhcCCCCCCCCCCC
Q 041476 223 IQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--------ID------------LAKMGVPFPASSRNA 282 (397)
Q Consensus 223 i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--------~~------------~~~l~~~l~~~~~~g 282 (397)
+|+..+ ...+.+.+.+-..+.-..-+|+++||+++.. .+ .+.+... ...+.+
T Consensus 258 ---eivSGv---SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~--~~~g~~ 329 (802)
T KOG0733|consen 258 ---EIVSGV---SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE--KTKGDP 329 (802)
T ss_pred ---hhhccc---CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc--ccCCCC
Confidence 222222 2233333334344444567999999999731 01 1111111 111233
Q ss_pred cEEEE-EcCChhhhh---hhc-cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCc
Q 041476 283 SKIVF-TTRLVDVCG---LME-AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGL 347 (397)
Q Consensus 283 s~Ilv-TtR~~~v~~---~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 347 (397)
.-||- |+|-..+-. ..+ .++-|.+.--++..-.+++...+.+-....+-+ .++|++..-|+
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGF 395 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCc
Confidence 33332 555444422 112 355677777777777777776654322122222 45666666664
No 134
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.82 E-value=0.00069 Score=71.00 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=88.1
Q ss_pred CCccccchhhHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHH
Q 041476 153 QPTIVGLESTFDKVWRCLVE------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQK 226 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~ 226 (397)
+.+.+|.+..+++|+++|.. ....++.++|++|+||||+++.++... ...|- -++.+...+..++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~---~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYV---RMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEEcCCCCCHHHhccc
Confidence 34569999999999988763 245689999999999999999999876 22232 2333333333322211
Q ss_pred HHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCchh------hhhcCCC------------CC--CCCCCCcEEE
Q 041476 227 IGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERID------LAKMGVP------------FP--ASSRNASKIV 286 (397)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~------~~~l~~~------------l~--~~~~~gs~Il 286 (397)
-....+ . ......+.+.. ...++-+|+||+++.... ...+... ++ +..-...-+|
T Consensus 395 ~~~~~g---~-~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 395 RRTYIG---S-MPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred hhccCC---C-CCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 111111 0 11122222322 122345789999963210 1111111 00 1111334445
Q ss_pred EEcCChhhh-hhhccCceeecCCCChHhHHHHHHHHhC
Q 041476 287 FTTRLVDVC-GLMEAQKTFKVECLADQDAWELFQKKVG 323 (397)
Q Consensus 287 vTtR~~~v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 323 (397)
.|+.+..+. ...+-...+++.+++.++-.++.+++..
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 566554332 2223345789999999999888877763
No 135
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.80 E-value=0.0012 Score=62.08 Aligned_cols=37 Identities=30% Similarity=0.325 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVV 214 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 214 (397)
...+.++|+.|+|||+||..+++... ..-..+++++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEH
Confidence 37799999999999999999999883 22234566654
No 136
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.80 E-value=0.00025 Score=74.38 Aligned_cols=170 Identities=18% Similarity=0.146 Sum_probs=91.1
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 155 TIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
++.|.+..+++|.+.+.- ...+.+.++|++|+|||+||+.+++.. ...| +.++.+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 478999998888777531 234678899999999999999999886 2222 222211
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch-------------hhhhcCCCCCC-CCCCCcEEEE
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI-------------DLAKMGVPFPA-SSRNASKIVF 287 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~-~~~~gs~Ilv 287 (397)
++.. ... ......+...+.......+.+|+|||++... ....+... +. ....+..+++
T Consensus 247 ~i~~----~~~---g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~-ld~l~~~~~vivI 318 (733)
T TIGR01243 247 EIMS----KYY---GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTL-MDGLKGRGRVIVI 318 (733)
T ss_pred HHhc----ccc---cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHH-hhccccCCCEEEE
Confidence 1110 000 0111122222333334567899999985310 01122111 11 1122333444
Q ss_pred -EcCChh-hhhhh----ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch
Q 041476 288 -TTRLVD-VCGLM----EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP 348 (397)
Q Consensus 288 -TtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (397)
||.... +...+ .....+.+...+.++..+++...........+ .....+++.+.|..
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFV 381 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCC
Confidence 444332 21111 12346788888888888888865532221111 12567778888865
No 137
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.78 E-value=0.0005 Score=64.40 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=78.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc--C-----CHHHHHHHHHHhhCcccCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD--M-----QLERIQQKIGERIGWLQNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~-----~~~~i~~~i~~~l~~~~~~~~~~~~~~l 246 (397)
.+..+.|+|++|+|||.+|+.+++.. ...| +.++.. . ..+..++++++ ..
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el---g~~~-----i~vsa~eL~sk~vGEsEk~IR~~F~---------------~A 203 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM---GIEP-----IVMSAGELESENAGEPGKLIRQRYR---------------EA 203 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc---CCCe-----EEEEHHHhhcCcCCcHHHHHHHHHH---------------HH
Confidence 56789999999999999999999997 2322 222211 0 11122222211 11
Q ss_pred HHH--hcCCcEEEEEecCCCc------h--h----h--hhcCCC------------C-CCCCCCCcEEEEEcCChhhh--
Q 041476 247 FNL--LSKMKFLLLLDDIWER------I--D----L--AKMGVP------------F-PASSRNASKIVFTTRLVDVC-- 295 (397)
Q Consensus 247 ~~~--L~~kr~LlVlDdv~~~------~--~----~--~~l~~~------------l-~~~~~~gs~IlvTtR~~~v~-- 295 (397)
.+. -++++++|+|||++.. . . . ..+... + ......+..||+||......
T Consensus 204 ~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDp 283 (413)
T PLN00020 204 ADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYA 283 (413)
T ss_pred HHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCH
Confidence 111 1468999999998731 0 0 0 011100 0 01224456778888766542
Q ss_pred hhhcc---CceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchh
Q 041476 296 GLMEA---QKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPL 349 (397)
Q Consensus 296 ~~~~~---~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 349 (397)
..... +..| ..-+.++-.++++.+..... .+ .....+|++...|-|+
T Consensus 284 ALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~--l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 284 PLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDG--VS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred hHcCCCCCCcee--CCCCHHHHHHHHHHHhccCC--CC---HHHHHHHHHcCCCCCc
Confidence 22221 2223 34456777777776654432 11 2445667777777764
No 138
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.73 E-value=0.00041 Score=68.25 Aligned_cols=179 Identities=15% Similarity=0.157 Sum_probs=101.9
Q ss_pred ccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCc
Q 041476 155 TIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGW 233 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (397)
+++|-+.....|.+.+..+.. .-....|+-|+||||+|+.++...-. .+. ....++..-...+.|...-..
T Consensus 17 evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC-~~~-------~~~ePC~~C~~Ck~I~~g~~~ 88 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNC-ENG-------PTAEPCGKCISCKEINEGSLI 88 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcC-CCC-------CCCCcchhhhhhHhhhcCCcc
Confidence 579999999999999987653 45678999999999999999877611 110 111122222222333322100
Q ss_pred c-------cCCCHHHHHHHHHHHh-----cCCcEEEEEecCC--CchhhhhcCCCCCCCCCCCcEEE-EEcCChhhh-hh
Q 041476 234 L-------QNRSFEEKASGIFNLL-----SKMKFLLLLDDIW--ERIDLAKMGVPFPASSRNASKIV-FTTRLVDVC-GL 297 (397)
Q Consensus 234 ~-------~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~~gs~Il-vTtR~~~v~-~~ 297 (397)
. .....++ .+.|.+.. +++-=+.|||+|. +...|+.+.-. +-.-..+.+.| .||-...+. .-
T Consensus 89 DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKT-LEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 89 DVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKT-LEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred cchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcc-cccCccCeEEEEecCCcCcCchhh
Confidence 0 1112222 22232222 2344599999996 45677777555 32222344444 455544442 33
Q ss_pred hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCC
Q 041476 298 MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSG 346 (397)
Q Consensus 298 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G 346 (397)
.+....|.++.|+.++-...+...+.......+ .+....|++..+|
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~G 212 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEG 212 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCC
Confidence 445678999999999888888777654432221 2233444445444
No 139
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.72 E-value=8.7e-05 Score=65.93 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVV 214 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 214 (397)
-.++|+|..|+|||||+..+.... ...|.++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 367799999999999999999887 678887777754
No 140
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.69 E-value=0.00073 Score=61.67 Aligned_cols=56 Identities=23% Similarity=0.286 Sum_probs=36.0
Q ss_pred hHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHH
Q 041476 162 TFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQ 225 (397)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~ 225 (397)
-++++..++..+ ..+.|.|++|+|||+||+.++... .. ..+.++++...+..+++.
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLVG 65 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHhh
Confidence 344555555433 456789999999999999998754 22 234556665555555543
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.69 E-value=0.00058 Score=71.53 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHhc-------C--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVE-------G--QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.+++..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4578888888888887753 1 23468899999999999999999876
No 142
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.68 E-value=0.00036 Score=65.81 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=65.6
Q ss_pred hHHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCe-EEEEEeCCc-CCHHHHHHHHHHhhCccc--C
Q 041476 162 TFDKVWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDI-VIWVVVSKD-MQLERIQQKIGERIGWLQ--N 236 (397)
Q Consensus 162 ~~~~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~-~~~~~i~~~i~~~l~~~~--~ 236 (397)
...++++.+.. +.-.-+.|+|++|+|||||++.+.+... .++-+. ++|+.+.+. .++.++++.+...+.... .
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 44557777764 3445678999999999999999998872 233344 467677654 478888888887666531 1
Q ss_pred CCHHH-----HHHHHHHHh--cCCcEEEEEecCC
Q 041476 237 RSFEE-----KASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 237 ~~~~~-----~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
..... ....+.+++ ++++.+||+|++.
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 11111 111222222 4789999999985
No 143
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.002 Score=62.50 Aligned_cols=157 Identities=21% Similarity=0.210 Sum_probs=96.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHh---
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLL--- 250 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L--- 250 (397)
.+..+.+.|++|+|||+||..++.. ..|+.+--++. +++ -..+.......+.+.+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSp------e~m-----------iG~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISP------EDM-----------IGLSESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeCh------HHc-----------cCccHHHHHHHHHHHHHHh
Confidence 4567889999999999999999776 34654433321 111 1223333444444444
Q ss_pred -cCCcEEEEEecCCCchhhhhcCCCC-----------CC-CCCCCcE--EEEEcCChhhhhhhcc----CceeecCCCCh
Q 041476 251 -SKMKFLLLLDDIWERIDLAKMGVPF-----------PA-SSRNASK--IVFTTRLVDVCGLMEA----QKTFKVECLAD 311 (397)
Q Consensus 251 -~~kr~LlVlDdv~~~~~~~~l~~~l-----------~~-~~~~gs~--IlvTtR~~~v~~~~~~----~~~~~l~~L~~ 311 (397)
+..--.||+||+....+|-.+++-+ +. ...+|-| |+-||....+...|+- ...|++..++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 3455799999998777776665431 11 1123444 4457777777776652 45788888887
Q ss_pred -HhHHHHHHHHh-CCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhc
Q 041476 312 -QDAWELFQKKV-GEETLESHPDIPELAQTVANECSGLPLALITTGRAMS 359 (397)
Q Consensus 312 -~~~~~Lf~~~~-~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~ 359 (397)
++..+.++..- | .+.+.+.++++...+| +-.+|+.+..++.
T Consensus 675 ~~~~~~vl~~~n~f-----sd~~~~~~~~~~~~~~--~~vgIKklL~lie 717 (744)
T KOG0741|consen 675 GEQLLEVLEELNIF-----SDDEVRAIAEQLLSKK--VNVGIKKLLMLIE 717 (744)
T ss_pred hHHHHHHHHHccCC-----CcchhHHHHHHHhccc--cchhHHHHHHHHH
Confidence 77777776642 3 2345566777777777 4445666655554
No 144
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0027 Score=65.29 Aligned_cols=108 Identities=18% Similarity=0.315 Sum_probs=65.7
Q ss_pred CccccchhhHHHHHHHHhc---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVE---------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQ 224 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~ 224 (397)
..++|.+..+..+.+.+.. ...++....||.|||||.||+.++.... +.-+..+-+ ++.+..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf---g~e~aliR~------DMSEy~ 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF---GDEQALIRI------DMSEYM 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc---CCCccceee------chHHHH
Confidence 4579999999999888753 2456788899999999999999998871 111233333 333322
Q ss_pred H--HHHHhhCcccC-CCHHHHHHHHHHHhcCCcE-EEEEecCCC--chhhhhc
Q 041476 225 Q--KIGERIGWLQN-RSFEEKASGIFNLLSKMKF-LLLLDDIWE--RIDLAKM 271 (397)
Q Consensus 225 ~--~i~~~l~~~~~-~~~~~~~~~l~~~L~~kr~-LlVlDdv~~--~~~~~~l 271 (397)
. .+.+-++.++. ...++ --.|.+.++.++| +|.||++.. +..++-+
T Consensus 562 EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nil 613 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLL 613 (786)
T ss_pred HHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHH
Confidence 2 22223333211 01111 2346667778888 888999973 3444443
No 145
>PRK12377 putative replication protein; Provisional
Probab=97.67 E-value=0.00053 Score=61.69 Aligned_cols=74 Identities=30% Similarity=0.263 Sum_probs=45.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKM 253 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~k 253 (397)
....+.|+|++|+|||+||..+++... .....++++++ .+++..+-..... ..... .+.+.+ .+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~--~~~~~----~~l~~l-~~ 163 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDN--GQSGE----KFLQEL-CK 163 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhc--cchHH----HHHHHh-cC
Confidence 346789999999999999999999983 22333566644 3455555443321 11111 122222 34
Q ss_pred cEEEEEecCC
Q 041476 254 KFLLLLDDIW 263 (397)
Q Consensus 254 r~LlVlDdv~ 263 (397)
--||||||+.
T Consensus 164 ~dLLiIDDlg 173 (248)
T PRK12377 164 VDLLVLDEIG 173 (248)
T ss_pred CCEEEEcCCC
Confidence 5699999994
No 146
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0056 Score=61.53 Aligned_cols=154 Identities=16% Similarity=0.220 Sum_probs=86.8
Q ss_pred ccccchhhHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 155 TIVGLESTFDKVWRCLVE------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
+-+|.++-+++|++.+.- -+-++++.+||+|||||++|+.++.... +.+| -++++.-.+..+|-..=-
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkFf----RfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKFF----RFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--CceE----EEeccccccHHhhcccce
Confidence 449999999999999853 2557999999999999999999999872 2333 234555444443321110
Q ss_pred HhhCcccCCCHHHHHHHHHHHh---cCCcEEEEEecCCCc---------hhhhhcCC---------CCCCCCCCCcEEEE
Q 041476 229 ERIGWLQNRSFEEKASGIFNLL---SKMKFLLLLDDIWER---------IDLAKMGV---------PFPASSRNASKIVF 287 (397)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~---------~~~~~l~~---------~l~~~~~~gs~Ilv 287 (397)
..+ ..+. -++-+.| +..+-|+.||+|+.. ..+-++.. .++...--=|+|++
T Consensus 486 TYV---GAMP-----GkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 486 TYV---GAMP-----GKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred eee---ccCC-----hHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 011 1111 1233333 345679999998631 11212211 11111112366664
Q ss_pred EcCChhh----hhhhccCceeecCCCChHhHHHHHHHHh
Q 041476 288 TTRLVDV----CGLMEAQKTFKVECLADQDAWELFQKKV 322 (397)
Q Consensus 288 TtR~~~v----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 322 (397)
-..-..+ .........|++.+...+|-..+-.+++
T Consensus 558 icTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 3322111 2223344678888888888777766654
No 147
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.66 E-value=0.00041 Score=61.27 Aligned_cols=168 Identities=15% Similarity=0.224 Sum_probs=96.2
Q ss_pred CccccchhhHHH---HHHHHhcC------CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHH
Q 041476 154 PTIVGLESTFDK---VWRCLVEG------QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQ 224 (397)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~ 224 (397)
++++|.+..+.+ |++.|.+. .++-|..+|++|.|||.+|+.+++.. +-.| +.+. ..++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vk----at~l- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVK----ATEL- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEec----hHHH-
Confidence 356888766543 56666652 57889999999999999999999987 2222 1111 1111
Q ss_pred HHHHHhhCcccCCCHHHHHHHHHHHh----cCCcEEEEEecCCCc----------hh----hhhcCCCC-CCCCCCCcEE
Q 041476 225 QKIGERIGWLQNRSFEEKASGIFNLL----SKMKFLLLLDDIWER----------ID----LAKMGVPF-PASSRNASKI 285 (397)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~l~~~L----~~kr~LlVlDdv~~~----------~~----~~~l~~~l-~~~~~~gs~I 285 (397)
|.+.. .+.+.++++.. +.-+|++.||+++.. .+ .+.+..-+ -...+.|..-
T Consensus 188 --iGehV--------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 188 --IGEHV--------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred --HHHHh--------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 11111 12223333332 346899999998631 11 12221110 0123456666
Q ss_pred EEEcCChhhhhh-h--ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch
Q 041476 286 VFTTRLVDVCGL-M--EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP 348 (397)
Q Consensus 286 lvTtR~~~v~~~-~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (397)
|..|.+.+.... + ....-|+...-+++|-.+++...+..-..+.. ...+.++++.+|+.
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~----~~~~~~~~~t~g~S 319 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD----ADLRYLAAKTKGMS 319 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc----cCHHHHHHHhCCCC
Confidence 666666665321 1 12346777778899999999888743221222 22566777777753
No 148
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0028 Score=59.20 Aligned_cols=171 Identities=12% Similarity=0.113 Sum_probs=93.3
Q ss_pred hhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCC----------------CCCCeEEEEEeCCc-CCHHH
Q 041476 161 STFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTP----------------NYFDIVIWVVVSKD-MQLER 222 (397)
Q Consensus 161 ~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~----------------~~f~~~~wv~vs~~-~~~~~ 222 (397)
...+.+...+..+..+ .+.++|+.|+||+++|..++....... .|.| ..|+..... ...
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~~~-- 87 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRTGD-- 87 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcccc--
Confidence 3456677777766654 588999999999999998887662111 1111 112210000 000
Q ss_pred HHHHHHHhhCcccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCC-hhh
Q 041476 223 IQQKIGERIGWLQNRSFEEKASGIFNLL-----SKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRL-VDV 294 (397)
Q Consensus 223 i~~~i~~~l~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~-~~v 294 (397)
........++ +..+.+.+ .+++-++|||+++.. ..-+.+.-. +-.-..++.+|++|.+ ..+
T Consensus 88 ---------k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKt-LEEPp~~~~fiL~~~~~~~l 156 (319)
T PRK08769 88 ---------KLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKT-LEEPSPGRYLWLISAQPARL 156 (319)
T ss_pred ---------cccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHH-hhCCCCCCeEEEEECChhhC
Confidence 0000011122 22233332 245669999999753 233333222 1111234556655554 444
Q ss_pred hhhh-ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 295 CGLM-EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 295 ~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
...+ +-...+.+.+++.+++...+... + .+ .+.+..++..++|.|+.+..+
T Consensus 157 LpTIrSRCq~i~~~~~~~~~~~~~L~~~-~-----~~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 157 PATIRSRCQRLEFKLPPAHEALAWLLAQ-G-----VS---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred chHHHhhheEeeCCCcCHHHHHHHHHHc-C-----CC---hHHHHHHHHHcCCCHHHHHHH
Confidence 3332 34567899999999998888653 1 11 223667899999999876544
No 149
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.65 E-value=0.0005 Score=72.98 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhc--------C-CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVE--------G-QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--------~-~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.+..++.+...+.. + ...++.++|+.|+|||+||+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999998888887752 1 12578899999999999999999876
No 150
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.64 E-value=0.00089 Score=61.37 Aligned_cols=166 Identities=19% Similarity=0.218 Sum_probs=99.8
Q ss_pred CccccchhhHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCH-HHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVE----GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQL-ERIQQKIG 228 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~-~~i~~~i~ 228 (397)
..++|-.++...+-.++.. +....+.|+||.|.|||+|......+.....++ .+-|........ +-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHHH
Confidence 4578988888888888754 466778899999999999998877774222333 344444443322 33556666
Q ss_pred HhhCcc------cCCCHHHHHHHHHHHhcC------CcEEEEEecCCCc-------hhhhhcCCCCCCCCCCCcEEEEEc
Q 041476 229 ERIGWL------QNRSFEEKASGIFNLLSK------MKFLLLLDDIWER-------IDLAKMGVPFPASSRNASKIVFTT 289 (397)
Q Consensus 229 ~~l~~~------~~~~~~~~~~~l~~~L~~------kr~LlVlDdv~~~-------~~~~~l~~~l~~~~~~gs~IlvTt 289 (397)
+++... ...+..+....+-..|+. -+.++|+|+++-- --++-+... .....+-+-|-+||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDis-qs~r~Piciig~Tt 179 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDIS-QSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHH-hhcCCCeEEEEeec
Confidence 665433 233344444555555542 3578888887631 111222222 23344556777999
Q ss_pred CChhhh-------hhhccCceeecCCCChHhHHHHHHHHhC
Q 041476 290 RLVDVC-------GLMEAQKTFKVECLADQDAWELFQKKVG 323 (397)
Q Consensus 290 R~~~v~-------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 323 (397)
|-.... ...+...++-+++++-++-..++++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 965431 2222223556677888888899888763
No 151
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.62 E-value=0.0003 Score=61.10 Aligned_cols=85 Identities=22% Similarity=0.211 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHHhhCcc-----cCCCHHHHHHHHHH
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGERIGWL-----QNRSFEEKASGIFN 248 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~~l~~~-----~~~~~~~~~~~l~~ 248 (397)
++++.++|+.|+||||.+-+++.... ..-..+..++... .....+-++..++.++.+ ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~---~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK---LKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh---hccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 47899999999999999888888772 2244566666542 335667788888888865 22234444433333
Q ss_pred HhcCCc-EEEEEecC
Q 041476 249 LLSKMK-FLLLLDDI 262 (397)
Q Consensus 249 ~L~~kr-~LlVlDdv 262 (397)
.++.++ =+|++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 344443 48888865
No 152
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00061 Score=62.02 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=76.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhc-cCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCC
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFL-HTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKM 253 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~-~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~k 253 (397)
.++|.++||+|.|||+|.+.++++.. +..+.+....-+.++. ..++..-..+ ...-...+-+++.+.+.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE----SgKlV~kmF~kI~ELv~d~ 248 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE----SGKLVAKMFQKIQELVEDR 248 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh----hhhHHHHHHHHHHHHHhCC
Confidence 57899999999999999999999972 1233344334444322 2222222211 2334455566777777776
Q ss_pred cE--EEEEecCCCch------------------------hhhhcCCCCCCCCCCCcEEEEEcCChh----hhhhhccCce
Q 041476 254 KF--LLLLDDIWERI------------------------DLAKMGVPFPASSRNASKIVFTTRLVD----VCGLMEAQKT 303 (397)
Q Consensus 254 r~--LlVlDdv~~~~------------------------~~~~l~~~l~~~~~~gs~IlvTtR~~~----v~~~~~~~~~ 303 (397)
.. ++.+|+|.+.. +.+.+.. ....+|+||.+-. +|---.++-+
T Consensus 249 ~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~-------~~NvliL~TSNl~~siD~AfVDRADi~ 321 (423)
T KOG0744|consen 249 GNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR-------YPNVLILATSNLTDSIDVAFVDRADIV 321 (423)
T ss_pred CcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc-------CCCEEEEeccchHHHHHHHhhhHhhhe
Confidence 54 56689996411 1222211 1234555555432 2222234557
Q ss_pred eecCCCChHhHHHHHHHHh
Q 041476 304 FKVECLADQDAWELFQKKV 322 (397)
Q Consensus 304 ~~l~~L~~~~~~~Lf~~~~ 322 (397)
..+.+-+...-.++++...
T Consensus 322 ~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 322 FYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred eecCCccHHHHHHHHHHHH
Confidence 7788888888888877654
No 153
>PRK07261 topology modulation protein; Provisional
Probab=97.62 E-value=0.00019 Score=61.00 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=43.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEE
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFL 256 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~L 256 (397)
-|.|+|++|+||||||+.+.....-..-+.|...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~-- 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW-------------------QERDDDDMIADISNFLLKHD-- 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc-------------------ccCCHHHHHHHHHHHHhCCC--
Confidence 478999999999999999987752112245555552211 12233455556666676666
Q ss_pred EEEecCCC
Q 041476 257 LLLDDIWE 264 (397)
Q Consensus 257 lVlDdv~~ 264 (397)
.|+|+...
T Consensus 61 wIidg~~~ 68 (171)
T PRK07261 61 WIIDGNYS 68 (171)
T ss_pred EEEcCcch
Confidence 68888754
No 154
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.61 E-value=0.00068 Score=57.05 Aligned_cols=135 Identities=13% Similarity=0.139 Sum_probs=71.0
Q ss_pred cchhhHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccCCCC-----------------CCeEEEEEeCCcCC
Q 041476 158 GLESTFDKVWRCLVEGQFG-IIGLYGMGGVGKTTLLAQINNKFLHTPNY-----------------FDIVIWVVVSKDMQ 219 (397)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~~-----------------f~~~~wv~vs~~~~ 219 (397)
|.+...+.|.+.+..++.+ .+.++|+.|+||+++|..+.......... ..-..|+.-....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~- 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK- 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-
Confidence 5566777888888777665 57999999999999999988876211111 1122233222110
Q ss_pred HHHHHHHHHHhhCcccCCCHHHHHHHHHHHhc-----CCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCCh
Q 041476 220 LERIQQKIGERIGWLQNRSFEEKASGIFNLLS-----KMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLV 292 (397)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~ 292 (397)
.....++.. .+.+.+. ++.=++||||++.. ...+.++.. +-....++.+|++|.+.
T Consensus 80 ---------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~-LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 80 ---------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKT-LEEPPENTYFILITNNP 142 (162)
T ss_dssp ---------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHH-HHSTTTTEEEEEEES-G
T ss_pred ---------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHH-hcCCCCCEEEEEEECCh
Confidence 011222222 3333332 34669999999753 445554333 22223467888877766
Q ss_pred h-hhhh-hccCceeecCCCC
Q 041476 293 D-VCGL-MEAQKTFKVECLA 310 (397)
Q Consensus 293 ~-v~~~-~~~~~~~~l~~L~ 310 (397)
. +... .+-...+.+.+||
T Consensus 143 ~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 143 SKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGS-HHHHTTSEEEEE----
T ss_pred HHChHHHHhhceEEecCCCC
Confidence 5 3322 2334566777664
No 155
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.60 E-value=0.00039 Score=61.18 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHh---hCcc----cCCCHHH---HH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGER---IGWL----QNRSFEE---KA 243 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~---l~~~----~~~~~~~---~~ 243 (397)
.-+++.|+|++|+|||+++.++..... .....++|++... ++...+.+..... .... ...+..+ ..
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 347999999999999999999888762 3356889999876 6655554432211 1111 2223233 34
Q ss_pred HHHHHHhcC-CcEEEEEecCC
Q 041476 244 SGIFNLLSK-MKFLLLLDDIW 263 (397)
Q Consensus 244 ~~l~~~L~~-kr~LlVlDdv~ 263 (397)
..+.+.+.. +.-+||+|.+.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcH
Confidence 555555544 56699999984
No 156
>PHA00729 NTP-binding motif containing protein
Probab=97.59 E-value=0.00037 Score=61.26 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=29.0
Q ss_pred HHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 165 KVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++++.+.+.....|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555666666789999999999999999998875
No 157
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.57 E-value=0.0016 Score=68.39 Aligned_cols=169 Identities=18% Similarity=0.184 Sum_probs=92.6
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 155 TIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
++.|.+..++.|.+.+.- ...+-+.++|++|+|||+||+.+++.. ...| +.+.. .
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~----~ 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRG----P 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----H
Confidence 467777777776665431 134568899999999999999999986 2222 22221 1
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCch--------------hhhhcCCCCCC--CCCCCcE
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFN-LLSKMKFLLLLDDIWERI--------------DLAKMGVPFPA--SSRNASK 284 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~--------------~~~~l~~~l~~--~~~~gs~ 284 (397)
++ +.... ..+ +.....+.. .-...+++|+||+++... ....+... +. ....+.-
T Consensus 522 ~l----~~~~v---Ges-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~-ldg~~~~~~v~ 592 (733)
T TIGR01243 522 EI----LSKWV---GES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTE-MDGIQELSNVV 592 (733)
T ss_pred HH----hhccc---CcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHH-hhcccCCCCEE
Confidence 11 11111 111 222222322 234568999999986310 01112111 11 1123455
Q ss_pred EEEEcCChhhhh--hh---ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch
Q 041476 285 IVFTTRLVDVCG--LM---EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP 348 (397)
Q Consensus 285 IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (397)
||.||....... .+ .-+..+.+...+.++-.++|+.+........+.+ ...+++.|.|+-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 666665554321 11 2356788999999999999987654322112222 456777777754
No 158
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.55 E-value=0.00075 Score=67.86 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=38.9
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 155 TIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|.+..+..+...+.......+.|+|++|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999888776666778899999999999999998754
No 159
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0065 Score=56.92 Aligned_cols=172 Identities=10% Similarity=0.039 Sum_probs=92.6
Q ss_pred hHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc------
Q 041476 162 TFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL------ 234 (397)
Q Consensus 162 ~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~------ 234 (397)
....+.+.+..+.. .-+.++|+.|+||+++|..++...... ...... .++.+ ...+.+...-...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~-~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ-TPQGDQ---PCGQC----HSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC-CCCCCC---CCCCC----HHHHHHhcCCCCCEEEEcc
Confidence 34566777766654 567799999999999999988776211 100000 00000 0111111000000
Q ss_pred ---cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCCh-hhhhh-hccCc
Q 041476 235 ---QNRSFEEKASGIFNLL-----SKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLV-DVCGL-MEAQK 302 (397)
Q Consensus 235 ---~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~-~v~~~-~~~~~ 302 (397)
.....++.. .+.+.+ .+++=++|+|+++.. ...+.+.-. +-.-..++.+|++|.+. .+... .+-..
T Consensus 82 ~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKt-LEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 82 IDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKT-LEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred ccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHH-hcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 011222222 233333 245668899999753 344444333 22223345566665554 44433 23456
Q ss_pred eeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHH
Q 041476 303 TFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLAL 351 (397)
Q Consensus 303 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 351 (397)
.+.+.++++++..+.+....... ...+...+..++|.|+.+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 89999999999998887754211 112566788899999643
No 160
>PRK08181 transposase; Validated
Probab=97.55 E-value=0.00014 Score=66.21 Aligned_cols=106 Identities=20% Similarity=0.101 Sum_probs=57.0
Q ss_pred HHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHH
Q 041476 168 RCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIF 247 (397)
Q Consensus 168 ~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~ 247 (397)
+|+. +...+.++|++|+|||.||..+.+... .....+.|++ ..+++..+..... ..+.....
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~---~~~~~~~l---- 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR---ELQLESAI---- 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh---CCcHHHHH----
Confidence 4543 335689999999999999999998872 2223445554 3555555543321 11222222
Q ss_pred HHhcCCcEEEEEecCCCc--hhh-h-hcCCCCCCCCCCCcEEEEEcCChh
Q 041476 248 NLLSKMKFLLLLDDIWER--IDL-A-KMGVPFPASSRNASKIVFTTRLVD 293 (397)
Q Consensus 248 ~~L~~kr~LlVlDdv~~~--~~~-~-~l~~~l~~~~~~gs~IlvTtR~~~ 293 (397)
+.+. +.=||||||+... ..+ . .+... +.....+..+|+||....
T Consensus 163 ~~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~l-in~R~~~~s~IiTSN~~~ 210 (269)
T PRK08181 163 AKLD-KFDLLILDDLAYVTKDQAETSVLFEL-ISARYERRSILITANQPF 210 (269)
T ss_pred HHHh-cCCEEEEeccccccCCHHHHHHHHHH-HHHHHhCCCEEEEcCCCH
Confidence 2222 3449999999532 122 1 22211 211111235888887643
No 161
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.48 E-value=0.00029 Score=74.53 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=38.4
Q ss_pred CCccccchhhHHHHHHHHhc-------C--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 153 QPTIVGLESTFDKVWRCLVE-------G--QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...++|.+..++.+.+.+.. . ...++.++|+.|+|||.||+.+.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999888742 1 23578999999999999999998876
No 162
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.48 E-value=0.00042 Score=64.50 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
.-+++-|+|++|+||||||.++..... ..-..++|++..+.++.. .+++++.. ...+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 446999999999999999999877762 334567888877666543 34444432 444566666666
Q ss_pred HHHhc-CCcEEEEEecCC
Q 041476 247 FNLLS-KMKFLLLLDDIW 263 (397)
Q Consensus 247 ~~~L~-~kr~LlVlDdv~ 263 (397)
...++ +..-+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 66554 356699999985
No 163
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.48 E-value=0.00064 Score=60.57 Aligned_cols=85 Identities=26% Similarity=0.278 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHh--------hCcccCCCHHH---H
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGER--------IGWLQNRSFEE---K 242 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~--------l~~~~~~~~~~---~ 242 (397)
.-.++.|+|++|+|||+++.+++.... ..-..++|++.. .++...+. ++... +......+..+ .
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 346999999999999999999988762 234678899887 55544433 22221 11112233333 3
Q ss_pred HHHHHHHhcCCcEEEEEecCC
Q 041476 243 ASGIFNLLSKMKFLLLLDDIW 263 (397)
Q Consensus 243 ~~~l~~~L~~kr~LlVlDdv~ 263 (397)
.+.+...+..+.-++|+|.+.
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 344444455677799999984
No 164
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.47 E-value=0.0011 Score=58.91 Aligned_cols=88 Identities=22% Similarity=0.231 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCC----CCCeEEEEEeCCcCCHHHHHHHHHHhhCc-----------ccCCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPN----YFDIVIWVVVSKDMQLERIQQKIGERIGW-----------LQNRS 238 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~i~~~i~~~l~~-----------~~~~~ 238 (397)
.-.++.|+|++|+|||+|+.+++.... ... .-..++|++....++...+.+ +.+.... ....+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~-~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ-LPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh-cccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeCCC
Confidence 346999999999999999999877651 111 115678998877776655433 3332211 13345
Q ss_pred HHHHHHHHHHHhc----CCcEEEEEecCC
Q 041476 239 FEEKASGIFNLLS----KMKFLLLLDDIW 263 (397)
Q Consensus 239 ~~~~~~~l~~~L~----~kr~LlVlDdv~ 263 (397)
.++....+..... .+.-|||+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 5666666655543 345699999985
No 165
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.47 E-value=0.00041 Score=64.61 Aligned_cols=82 Identities=20% Similarity=0.177 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
.-+++-|+|++|+||||||.+++-.. ...-..++|++....+++. .+++++.. ...+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 34688999999999999999988776 2334578899887776653 33444432 344566666666
Q ss_pred HHHhcC-CcEEEEEecCC
Q 041476 247 FNLLSK-MKFLLLLDDIW 263 (397)
Q Consensus 247 ~~~L~~-kr~LlVlDdv~ 263 (397)
...++. ..-+||+|.+-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 666554 45699999974
No 166
>PRK06526 transposase; Provisional
Probab=97.45 E-value=0.00013 Score=65.94 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=43.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKM 253 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~k 253 (397)
....+.|+|++|+|||+||..+.+... . ..+ .+.|+ +..+++..+...... .. ....+... .+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~-~-~g~-~v~f~------t~~~l~~~l~~~~~~---~~---~~~~l~~l--~~ 159 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC-Q-AGH-RVLFA------TAAQWVARLAAAHHA---GR---LQAELVKL--GR 159 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH-H-CCC-chhhh------hHHHHHHHHHHHHhc---Cc---HHHHHHHh--cc
Confidence 345689999999999999999988762 1 112 22332 344555555433211 11 11222222 23
Q ss_pred cEEEEEecCCC
Q 041476 254 KFLLLLDDIWE 264 (397)
Q Consensus 254 r~LlVlDdv~~ 264 (397)
.-||||||+..
T Consensus 160 ~dlLIIDD~g~ 170 (254)
T PRK06526 160 YPLLIVDEVGY 170 (254)
T ss_pred CCEEEEccccc
Confidence 45999999963
No 167
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.009 Score=55.82 Aligned_cols=163 Identities=12% Similarity=0.073 Sum_probs=92.2
Q ss_pred hHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEEEeCCcCCHHH
Q 041476 162 TFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTP------------------NYFDIVIWVVVSKDMQLER 222 (397)
Q Consensus 162 ~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~vs~~~~~~~ 222 (397)
....+...+..+.. ..+.+.|+.|+||+++|..+........ .|.|. .|+.-...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~----- 84 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL-HVIKPEKE----- 84 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecCcC-----
Confidence 34566666666654 4788999999999999999887652111 11221 11211000
Q ss_pred HHHHHHHhhCcccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCC-hhh
Q 041476 223 IQQKIGERIGWLQNRSFEEKASGIFNLL-----SKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRL-VDV 294 (397)
Q Consensus 223 i~~~i~~~l~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~-~~v 294 (397)
......++.. .+.+.+ .++.=++|+|+++.. ...+.+.-. +-.-..++.+|++|.+ ..+
T Consensus 85 -----------~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKt-LEEPp~~t~fiL~t~~~~~l 151 (319)
T PRK06090 85 -----------GKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKT-LEEPAPNCLFLLVTHNQKRL 151 (319)
T ss_pred -----------CCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHH-hcCCCCCeEEEEEECChhhC
Confidence 0011222222 233333 234558999999753 344444333 2112234555555544 444
Q ss_pred hhhh-ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 295 CGLM-EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 295 ~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
...+ +-...+.+.+++.++..+.+.... .+ ....++..++|.|+.+..+
T Consensus 152 LpTI~SRCq~~~~~~~~~~~~~~~L~~~~------~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 152 LPTIVSRCQQWVVTPPSTAQAMQWLKGQG------IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hHHHHhcceeEeCCCCCHHHHHHHHHHcC------Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 4333 345688999999999998886531 11 1356788999999876544
No 168
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.44 E-value=0.00049 Score=59.77 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=63.8
Q ss_pred cchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC----c--CCHHH-------HH
Q 041476 158 GLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK----D--MQLER-------IQ 224 (397)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~----~--~~~~~-------i~ 224 (397)
.+..+-...++.|. +..++.+.|++|.|||.||....-+.. ..+.++.++++.-.- . +-+-+ .+
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v-~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELV-KEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHH-HTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34555666777776 457999999999999999988887662 347888888775211 1 11111 11
Q ss_pred HHHHHhhCcc-cCCCHHHHHHH------HHHHhcCC---cEEEEEecCCC--chhhhhcCCCCCCCCCCCcEEEEEcCCh
Q 041476 225 QKIGERIGWL-QNRSFEEKASG------IFNLLSKM---KFLLLLDDIWE--RIDLAKMGVPFPASSRNASKIVFTTRLV 292 (397)
Q Consensus 225 ~~i~~~l~~~-~~~~~~~~~~~------l~~~L~~k---r~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IlvTtR~~ 292 (397)
.-+...+..- .....+.+.+. --.+++|+ ..+||+|+..+ ..++..+ +...+.|||+|++--..
T Consensus 81 ~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i----lTR~g~~skii~~GD~~ 156 (205)
T PF02562_consen 81 RPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI----LTRIGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH----HTTB-TT-EEEEEE---
T ss_pred HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH----HcccCCCcEEEEecCce
Confidence 1122222111 11122221110 01234453 56999999975 3566665 33456789999986654
Q ss_pred h
Q 041476 293 D 293 (397)
Q Consensus 293 ~ 293 (397)
+
T Consensus 157 Q 157 (205)
T PF02562_consen 157 Q 157 (205)
T ss_dssp -
T ss_pred e
Confidence 4
No 169
>PRK09354 recA recombinase A; Provisional
Probab=97.42 E-value=0.0006 Score=64.06 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=58.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
.-+++-|+|++|+|||||+.++.... ...-..++|+.....++.. .+++++.. ...+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 34689999999999999999988776 2334678899888777653 34444432 344566666666
Q ss_pred HHHhcC-CcEEEEEecCC
Q 041476 247 FNLLSK-MKFLLLLDDIW 263 (397)
Q Consensus 247 ~~~L~~-kr~LlVlDdv~ 263 (397)
...++. +.-+||+|-+-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 666654 56699999985
No 170
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.42 E-value=0.00085 Score=60.15 Aligned_cols=88 Identities=22% Similarity=0.269 Sum_probs=55.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCC----CCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----------cCCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPN----YFDIVIWVVVSKDMQLERIQQKIGERIGWL-----------QNRS 238 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~~~~ 238 (397)
.-.++.|+|++|+|||+|+.+++-.. .... ....++|++....++...+.+ +++..+.. ...+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 34689999999999999999997553 1112 136899999888776554433 33332211 2223
Q ss_pred HHH---HHHHHHHHhc-C-CcEEEEEecCC
Q 041476 239 FEE---KASGIFNLLS-K-MKFLLLLDDIW 263 (397)
Q Consensus 239 ~~~---~~~~l~~~L~-~-kr~LlVlDdv~ 263 (397)
..+ ....+.+.+. . +.-|||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 333 3344444443 3 56799999985
No 171
>PRK06921 hypothetical protein; Provisional
Probab=97.42 E-value=0.00041 Score=63.31 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVV 214 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 214 (397)
....+.++|+.|+|||+|+..+++... ...-..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456789999999999999999999872 221344566654
No 172
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.42 E-value=0.001 Score=69.53 Aligned_cols=180 Identities=17% Similarity=0.210 Sum_probs=89.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhc-cCCC-C-----------CCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFL-HTPN-Y-----------FDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFE 240 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~-~~~~-~-----------f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (397)
+.+++.|+|+.|.||||+.+.+.-... ...+ + |+.+ +..+... +.+.+.+. +..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i-~~~i~~~-------~si~~~LS-----tfS 387 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI-FADIGDE-------QSIEQNLS-----TFS 387 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe-eeecChH-------hHHhhhhh-----HHH
Confidence 347899999999999999999865510 0011 0 1111 1111111 11111111 001
Q ss_pred HHHHHHHHHhc--CCcEEEEEecCCCch---hhhhc----CCCCCCCCCCCcEEEEEcCChhhhhhhccCceeecCCCCh
Q 041476 241 EKASGIFNLLS--KMKFLLLLDDIWERI---DLAKM----GVPFPASSRNASKIVFTTRLVDVCGLMEAQKTFKVECLAD 311 (397)
Q Consensus 241 ~~~~~l~~~L~--~kr~LlVlDdv~~~~---~~~~l----~~~l~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~l~~L~~ 311 (397)
.-...+...+. .++-|++||++-... +...+ ... + ...|+.+|+||...+..........+....+..
T Consensus 388 ~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~-l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~ 464 (771)
T TIGR01069 388 GHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEY-L--LKQNAQVLITTHYKELKALMYNNEGVENASVLF 464 (771)
T ss_pred HHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHH-H--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEEE
Confidence 11112222332 478999999986432 22222 122 2 134788999999988754322221111111110
Q ss_pred -HhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 041476 312 -QDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSSKKTPEEWSYAIQMLRRS 377 (397)
Q Consensus 312 -~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~~l~~~ 377 (397)
.+... |..++... .+ -...|-.|++++ |+|-.|.--|.-+.. ....+...++..|...
T Consensus 465 d~~~l~-p~Ykl~~G---~~--g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 465 DEETLS-PTYKLLKG---IP--GESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSAL 523 (771)
T ss_pred cCCCCc-eEEEECCC---CC--CCcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 01000 11111111 11 133478888877 899998888877765 3455677777666553
No 173
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0081 Score=56.72 Aligned_cols=163 Identities=10% Similarity=0.049 Sum_probs=91.9
Q ss_pred hHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccC-------------------CCCCCeEEEEEeCCcCCHH
Q 041476 162 TFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHT-------------------PNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 162 ~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~-------------------~~~f~~~~wv~vs~~~~~~ 221 (397)
.-+++.+.+..+++ .-+.+.|+.|+||+++|..++...... ..|.|. .++.-...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~---- 84 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKG---- 84 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecccc----
Confidence 45667777776654 567799999999999999987766211 112221 11110000
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCC-hh
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLL-----SKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRL-VD 293 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~-~~ 293 (397)
......++.. .+.+.+ .+++=++|||+.+.. ..-+.+.-. +-.-..++.+|++|.+ ..
T Consensus 85 ------------~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKt-LEEPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 85 ------------KSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKT-LEEPPENTWFFLACREPAR 150 (334)
T ss_pred ------------cccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHH-hcCCCCCeEEEEEECChhh
Confidence 0011222222 233333 255669999999753 333443322 2111234555555554 44
Q ss_pred hhhh-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHH
Q 041476 294 VCGL-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLAL 351 (397)
Q Consensus 294 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 351 (397)
+... .+-...+.+.+++.++..+.+....+ .+ .+.+..++..++|.|..+
T Consensus 151 lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~-----~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 151 LLATLRSRCRLHYLAPPPEQYALTWLSREVT-----MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ChHHHHhccccccCCCCCHHHHHHHHHHccC-----CC---HHHHHHHHHHcCCCHHHH
Confidence 5433 23456789999999999988865421 11 233678899999999744
No 174
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.42 E-value=0.00013 Score=58.07 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 175
>PRK04132 replication factor C small subunit; Provisional
Probab=97.41 E-value=0.0049 Score=64.56 Aligned_cols=155 Identities=11% Similarity=0.031 Sum_probs=92.0
Q ss_pred CCCCcHHHHHHHHHhhhccCCCCC-CeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEec
Q 041476 183 MGGVGKTTLLAQINNKFLHTPNYF-DIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDD 261 (397)
Q Consensus 183 ~~GvGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDd 261 (397)
|.++||||+|+.++++.. ...+ ...+-++.+.......+- +++..+....+. -..+.-++|||+
T Consensus 574 Ph~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~~------------~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELF--GENWRHNFLELNASDERGINVIR-EKVKEFARTKPI------------GGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCCc------------CCCCCEEEEEEC
Confidence 889999999999999862 1222 246666777654444333 332222110000 012457999999
Q ss_pred CCCc--hhhhhcCCCCCCCCCCCcEEEEEcCCh-hhhhh-hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHH
Q 041476 262 IWER--IDLAKMGVPFPASSRNASKIVFTTRLV-DVCGL-MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELA 337 (397)
Q Consensus 262 v~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~ 337 (397)
++.. ...+.+... +-.....+++|++|.+. .+... .+.+..+++.+++.++-...+...+....... ..+..
T Consensus 639 aD~Lt~~AQnALLk~-lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i---~~e~L 714 (846)
T PRK04132 639 ADALTQDAQQALRRT-MEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL---TEEGL 714 (846)
T ss_pred cccCCHHHHHHHHHH-hhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC---CHHHH
Confidence 9864 455555444 22222345666555543 33322 23456899999999999888877664332122 24567
Q ss_pred HHHHHHcCCchhHHHHHHH
Q 041476 338 QTVANECSGLPLALITTGR 356 (397)
Q Consensus 338 ~~I~~~c~GlPLai~~~~~ 356 (397)
..|++.|+|.+-.+..+..
T Consensus 715 ~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 715 QAILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 8999999998855544433
No 176
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0035 Score=62.41 Aligned_cols=143 Identities=17% Similarity=0.134 Sum_probs=76.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKM 253 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~k 253 (397)
.++-|.++||+|+|||++|+.+++.. +..| +.++.. +++.. .. ..+...+.+..++.=+--
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp----EL~sk----~v---GeSEr~ir~iF~kAR~~a 527 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP----ELFSK----YV---GESERAIREVFRKARQVA 527 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----HHHHH----hc---CchHHHHHHHHHHHhhcC
Confidence 56789999999999999999999987 3444 222211 11111 11 112222222222333346
Q ss_pred cEEEEEecCCCch-------------hhhhcCCCCCCC-CC-CCcEEEE-EcCChhh-hhhhc---cCceeecCCCChHh
Q 041476 254 KFLLLLDDIWERI-------------DLAKMGVPFPAS-SR-NASKIVF-TTRLVDV-CGLME---AQKTFKVECLADQD 313 (397)
Q Consensus 254 r~LlVlDdv~~~~-------------~~~~l~~~l~~~-~~-~gs~Ilv-TtR~~~v-~~~~~---~~~~~~l~~L~~~~ 313 (397)
+++|.||+++... .+..+..- ... .. ++.-||- |-|...+ ...+. .+..+.+.+-+.+.
T Consensus 528 P~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtE-mDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~a 606 (693)
T KOG0730|consen 528 PCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTE-MDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEA 606 (693)
T ss_pred CeEEehhhHHhHhhccCCCccchHHHHHHHHHHH-cccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHH
Confidence 7999999987421 11222111 111 11 1222332 3343333 12233 45677888888888
Q ss_pred HHHHHHHHhCCccCCCCCChHHH
Q 041476 314 AWELFQKKVGEETLESHPDIPEL 336 (397)
Q Consensus 314 ~~~Lf~~~~~~~~~~~~~~~~~~ 336 (397)
..++|+.++.......+-+++.+
T Consensus 607 R~~Ilk~~~kkmp~~~~vdl~~L 629 (693)
T KOG0730|consen 607 RLEILKQCAKKMPFSEDVDLEEL 629 (693)
T ss_pred HHHHHHHHHhcCCCCccccHHHH
Confidence 88999998865543333344444
No 177
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.37 E-value=0.00076 Score=71.79 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=38.5
Q ss_pred CccccchhhHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVEG---------QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45899999999998887641 24578899999999999999999876
No 178
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.36 E-value=0.00026 Score=66.48 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=40.1
Q ss_pred ccccchhhHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 155 TIVGLESTFDKVWRCLVE------GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|.++.++++++++.. ...+++.++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999864 245789999999999999999999887
No 179
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.013 Score=55.29 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=53.9
Q ss_pred CCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEE-EEcCChhhhhh-hccCceeecCCCChHhHHHHHHHHhCCccC
Q 041476 252 KMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIV-FTTRLVDVCGL-MEAQKTFKVECLADQDAWELFQKKVGEETL 327 (397)
Q Consensus 252 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Il-vTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 327 (397)
+++=++|+|+.+.. ...+.+.-. +-.-.+++.+| +|++...+... .+-...+.+.+++.++..+.+....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKt-LEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----- 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKT-LEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----- 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHH-hcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-----
Confidence 34558999999753 445554433 22223345455 55554555433 2345689999999999998887641
Q ss_pred CCCCChHHHHHHHHHHcCCchhHHH
Q 041476 328 ESHPDIPELAQTVANECSGLPLALI 352 (397)
Q Consensus 328 ~~~~~~~~~~~~I~~~c~GlPLai~ 352 (397)
.++ .+.++..++|.|+.+.
T Consensus 205 -~~~-----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 205 -VAD-----ADALLAEAGGAPLAAL 223 (342)
T ss_pred -CCh-----HHHHHHHcCCCHHHHH
Confidence 111 2335778899997544
No 180
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.36 E-value=0.0012 Score=59.18 Aligned_cols=75 Identities=27% Similarity=0.265 Sum_probs=46.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCc
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMK 254 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr 254 (397)
...+.++|.+|+|||+|+..+++... ..-..+++++ ..+++..+-..... ...+.. .+.+.+. +.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-~~~~~~----~~l~~l~-~~ 163 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-SETSEE----QLLNDLS-NV 163 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-ccccHH----HHHHHhc-cC
Confidence 35788999999999999999999983 2223455553 35555555443321 111222 2333344 34
Q ss_pred EEEEEecCCC
Q 041476 255 FLLLLDDIWE 264 (397)
Q Consensus 255 ~LlVlDdv~~ 264 (397)
=||||||+..
T Consensus 164 dlLvIDDig~ 173 (244)
T PRK07952 164 DLLVIDEIGV 173 (244)
T ss_pred CEEEEeCCCC
Confidence 4888999954
No 181
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0031 Score=64.43 Aligned_cols=174 Identities=16% Similarity=0.203 Sum_probs=100.6
Q ss_pred ccccchh---hHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHH
Q 041476 155 TIVGLES---TFDKVWRCLVEG---------QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLER 222 (397)
Q Consensus 155 ~~vGr~~---~~~~l~~~L~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 222 (397)
++.|-++ |++++++.|.++ -++-+.++||+|+|||-||+.++-.. . +-|++++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS----- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS----- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH-----
Confidence 4567654 566666777653 35678899999999999999999887 2 234455433
Q ss_pred HHHHHHHhhCcccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCc-----------------hhhhhcCCCCCC-CCCCCc
Q 041476 223 IQQKIGERIGWLQNRSFEEKASGIFNLL-SKMKFLLLLDDIWER-----------------IDLAKMGVPFPA-SSRNAS 283 (397)
Q Consensus 223 i~~~i~~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~-----------------~~~~~l~~~l~~-~~~~gs 283 (397)
+..+.+.... ......|...- ...+++|.+|+++.. ..++++..-+=. ....+.
T Consensus 379 ---EFvE~~~g~~----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~v 451 (774)
T KOG0731|consen 379 ---EFVEMFVGVG----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGV 451 (774)
T ss_pred ---HHHHHhcccc----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcE
Confidence 1111111100 12222233222 346899999998631 112232211000 111233
Q ss_pred EEEEEcCChhhhh--hh---ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHH
Q 041476 284 KIVFTTRLVDVCG--LM---EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLAL 351 (397)
Q Consensus 284 ~IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 351 (397)
-++-+|...++.+ .+ .-+..+.+..-+.....++|.-++..-.. ..+..++.+ |+....|++=|.
T Consensus 452 i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~--~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 452 IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL--DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC--CcchhhHHH-HHhcCCCCcHHH
Confidence 3445566555532 12 23567888888889999999988754431 234556666 888888887554
No 182
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.059 Score=51.72 Aligned_cols=167 Identities=19% Similarity=0.177 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhc--CC
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLS--KM 253 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~--~k 253 (397)
+--.++||+|.|||++..++++.. .|+..- +..+.-. +..+ |+..|. ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v~-------------------~n~d----Lr~LL~~t~~ 286 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEVK-------------------LDSD----LRHLLLATPN 286 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeecccc-------------------CcHH----HHHHHHhCCC
Confidence 467899999999999999999987 233211 1111111 1111 333332 34
Q ss_pred cEEEEEecCCCch-----------hhh---------hcCCCC--CCCCCCCcEE-EEEcCChhhh--hhh---ccCceee
Q 041476 254 KFLLLLDDIWERI-----------DLA---------KMGVPF--PASSRNASKI-VFTTRLVDVC--GLM---EAQKTFK 305 (397)
Q Consensus 254 r~LlVlDdv~~~~-----------~~~---------~l~~~l--~~~~~~gs~I-lvTtR~~~v~--~~~---~~~~~~~ 305 (397)
+-+|||.|++... ... .++..+ +.....+=|| |+||...+-. ..+ ..+..+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 6677777775310 011 111110 1111112355 4666655542 222 2345789
Q ss_pred cCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHH-hhcCCC-ChhHHHHHHHHHhcc
Q 041476 306 VECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGR-AMSSKK-TPEEWSYAIQMLRRS 377 (397)
Q Consensus 306 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~-~L~~~~-~~~~w~~~~~~l~~~ 377 (397)
+.--+.+....||.+..+.+. + ..+..+|.+.-.|.-+.=..++. +|..+. .....+.+.+.|.+.
T Consensus 367 mgyCtf~~fK~La~nYL~~~~---~---h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~ 434 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEE---D---HRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESK 434 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCC---C---cchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence 999999999999999886533 1 23456666655665555455554 445532 233455555555443
No 183
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.35 E-value=0.00034 Score=61.05 Aligned_cols=111 Identities=11% Similarity=0.094 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH-HHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCc
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE-RIQQKIGERIGWLQNRSFEEKASGIFNLLSKMK 254 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~-~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr 254 (397)
+++.|+|+.|+||||++..+.... .......++.- ..+.... .-...+..+-. ...+.....+.++..|...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~--vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPIEFVHESKRSLINQRE--VGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCccccccCccceeeecc--cCCCccCHHHHHHHHhcCCc
Confidence 578999999999999999888776 22333333332 1111100 00001111100 01122345566777787778
Q ss_pred EEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhhh
Q 041476 255 FLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVCG 296 (397)
Q Consensus 255 ~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~ 296 (397)
=++++|++.+.+........ ...|..++.|+...++..
T Consensus 76 d~ii~gEird~e~~~~~l~~----a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 76 DVILVGEMRDLETIRLALTA----AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHH----HHcCCEEEEEecCCcHHH
Confidence 89999999776655443222 234566888888766543
No 184
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0019 Score=64.74 Aligned_cols=151 Identities=17% Similarity=0.106 Sum_probs=87.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC--CHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhc
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM--QLERIQQKIGERIGWLQNRSFEEKASGIFNLLS 251 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~ 251 (397)
..+-|.|.|+.|+|||+||+.+++... +.+.-.+.+|+++.-. .++.+++.+- ..+.+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~---------------~vfse~~~ 492 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLN---------------NVFSEALW 492 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHH---------------HHHHHHHh
Confidence 346788999999999999999999983 5666667777776432 2333322221 22344556
Q ss_pred CCcEEEEEecCCCc--------hhhh-----------hcCCCCCCCCCCCc--EEEEEcCChhhhh-hh----ccCceee
Q 041476 252 KMKFLLLLDDIWER--------IDLA-----------KMGVPFPASSRNAS--KIVFTTRLVDVCG-LM----EAQKTFK 305 (397)
Q Consensus 252 ~kr~LlVlDdv~~~--------~~~~-----------~l~~~l~~~~~~gs--~IlvTtR~~~v~~-~~----~~~~~~~ 305 (397)
..+-+|||||++.. .+|. ++... + ...+. .+|.|........ .+ -.+.+..
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~-y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~ 569 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKI-Y--LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIA 569 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHH-H--HccCcEEEEEEechhhhhcChhhcCccceEEEEe
Confidence 78899999999631 1111 11111 1 12233 3444544433211 11 1234678
Q ss_pred cCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCc
Q 041476 306 VECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGL 347 (397)
Q Consensus 306 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 347 (397)
|..+...+-.++++....... ........+-+..+|+|.
T Consensus 570 L~ap~~~~R~~IL~~~~s~~~---~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 570 LPAPAVTRRKEILTTIFSKNL---SDITMDDLDFLSVKTEGY 608 (952)
T ss_pred cCCcchhHHHHHHHHHHHhhh---hhhhhHHHHHHHHhcCCc
Confidence 889988888887776553222 111233345588888884
No 185
>PRK09183 transposase/IS protein; Provisional
Probab=97.35 E-value=0.00032 Score=63.81 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+.|+|++|+|||+||..+.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567799999999999999998775
No 186
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.35 E-value=0.0076 Score=56.79 Aligned_cols=40 Identities=23% Similarity=0.384 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 160 ESTFDKVWRCLVE---GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 160 ~~~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.-.+.|.+.+.+ ....+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445666666665 356799999999999999999999988
No 187
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.34 E-value=0.01 Score=59.66 Aligned_cols=199 Identities=14% Similarity=0.099 Sum_probs=113.0
Q ss_pred CccccchhhHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhcc--CCCCCCeE--EEEEeCCcCCHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVE-----GQFGIIGLYGMGGVGKTTLLAQINNKFLH--TPNYFDIV--IWVVVSKDMQLERIQ 224 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~--~~~~f~~~--~wv~vs~~~~~~~i~ 224 (397)
..+-+|+.+..+|-..+.. +..+.+-|.|-+|+|||..++.|.+.... ..+.-... +.|+.-.-..+.+++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 4567899999998887753 23348899999999999999999986621 12223323 334444445789999
Q ss_pred HHHHHhhCcccCCCHHHHHHHHHHHhc-----CCcEEEEEecCCCchh--hhhcCCCCCCCCCCCcEEEEEc-CChh-h-
Q 041476 225 QKIGERIGWLQNRSFEEKASGIFNLLS-----KMKFLLLLDDIWERID--LAKMGVPFPASSRNASKIVFTT-RLVD-V- 294 (397)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~~~--~~~l~~~l~~~~~~gs~IlvTt-R~~~-v- 294 (397)
..|..++... ........+.|..++. .+.++|++|+++.... .+-+...+-....++||++|-+ -+.. .
T Consensus 476 ~~I~~~lsg~-~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlP 554 (767)
T KOG1514|consen 476 EKIWEALSGE-RVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLP 554 (767)
T ss_pred HHHHHhcccC-cccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCH
Confidence 9999999874 3344444555665554 3578999999864211 1111111112334566655432 2211 1
Q ss_pred hhhhc-------cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHH
Q 041476 295 CGLME-------AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALIT 353 (397)
Q Consensus 295 ~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 353 (397)
-..+. .-..+...|-++++-.++...++.....-.+...+=++++|+.-.|-.-.|+.+
T Consensus 555 Er~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldi 620 (767)
T KOG1514|consen 555 ERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDI 620 (767)
T ss_pred HHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHH
Confidence 11111 123566777777777777766554332112222333445555555544444433
No 188
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.34 E-value=0.0025 Score=56.41 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHh----hCcc----cCCCHHHH---
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGER----IGWL----QNRSFEEK--- 242 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~----l~~~----~~~~~~~~--- 242 (397)
.-.++.|.|++|+||||++.+++.... ..-..++|++....+. +-++++... +... ...+..+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRA 92 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence 457899999999999999999988762 2334677887655443 222333322 1111 22233232
Q ss_pred HHHHHHHhcCCcEEEEEecCC
Q 041476 243 ASGIFNLLSKMKFLLLLDDIW 263 (397)
Q Consensus 243 ~~~l~~~L~~kr~LlVlDdv~ 263 (397)
...+...+..+.-++|+|-+-
T Consensus 93 ~~~~~~~~~~~~~lvvIDsi~ 113 (218)
T cd01394 93 IQETETFADEKVDLVVVDSAT 113 (218)
T ss_pred HHHHHHHHhcCCcEEEEechH
Confidence 234444455556789999874
No 189
>PRK06762 hypothetical protein; Provisional
Probab=97.34 E-value=0.0037 Score=52.74 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3688999999999999999998886
No 190
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.33 E-value=0.0016 Score=59.09 Aligned_cols=88 Identities=27% Similarity=0.295 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----------cCCCHH
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLH---TPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-----------QNRSFE 240 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~~~~~~ 240 (397)
-.+.=|+|++|+|||.|+.+++-...- ..+.-..++|++....++...+. +|++..... ...+..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 458889999999999999888654310 11233479999999989887765 456554432 223444
Q ss_pred HHHH---HHHHHhc-CCcEEEEEecCC
Q 041476 241 EKAS---GIFNLLS-KMKFLLLLDDIW 263 (397)
Q Consensus 241 ~~~~---~l~~~L~-~kr~LlVlDdv~ 263 (397)
++.. .+...+. .+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 4433 3333343 345599999984
No 191
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.018 Score=58.52 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=59.1
Q ss_pred CccccchhhHHHHHHHHhc----------C--CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCLVE----------G--QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----------~--~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
+++=|-++.+..|.+-+.- + +.+-|.++|++|.|||-||+.|+.+.. .-|++|-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------eeEEeecCH----
Confidence 4556778888888776532 1 356789999999999999999998872 234555433
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCC
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWE 264 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 264 (397)
+++..- -..+.+...+...+.=..++|.|.+|++++
T Consensus 740 ELLNMY-------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLNMY-------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHH-------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 111111 122333333434444456899999999975
No 192
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.32 E-value=0.0077 Score=53.90 Aligned_cols=207 Identities=14% Similarity=0.152 Sum_probs=118.9
Q ss_pred cccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCCCeEEEEEeCCc---------------
Q 041476 156 IVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLH---TPNYFDIVIWVVVSKD--------------- 217 (397)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~--------------- 217 (397)
+.++++....+......+..+-+.++||+|.||-|.+..+.++... .+-.-+..-|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 5667777777777766677899999999999999888777666521 1223344555543322
Q ss_pred ------CCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhc-CCcE-EEEEecCCC--chhhhhcCCCCCCCCCCCcEEEE
Q 041476 218 ------MQLERIQQKIGERIGWLQNRSFEEKASGIFNLLS-KMKF-LLLLDDIWE--RIDLAKMGVPFPASSRNASKIVF 287 (397)
Q Consensus 218 ------~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~-~kr~-LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~Ilv 287 (397)
..-+-+.++++.+....... ... .+.| ++||-.+++ .+....++.. .-.-.+.+|+|+
T Consensus 95 tPSDaG~~DRvViQellKevAQt~qi-----------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRT-MEkYs~~~RlIl 162 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQI-----------ETQGQRPFKVVVINEADELTRDAQHALRRT-MEKYSSNCRLIL 162 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcch-----------hhccccceEEEEEechHhhhHHHHHHHHHH-HHHHhcCceEEE
Confidence 11233444444443321000 011 2344 666666654 2333444333 111123467766
Q ss_pred EcCChh--hhhhhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcCC----
Q 041476 288 TTRLVD--VCGLMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSSK---- 361 (397)
Q Consensus 288 TtR~~~--v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~---- 361 (397)
...+.. +...-+..-.+++...+++|....+++.+.......+ .+++.+|+++|+|.---...+...++.+
T Consensus 163 ~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~ 239 (351)
T KOG2035|consen 163 VCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNEPF 239 (351)
T ss_pred EecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhccccc
Confidence 443322 2221123346789999999999999998866553333 6789999999998654433333333221
Q ss_pred ------CChhHHHHHHHHHhcc
Q 041476 362 ------KTPEEWSYAIQMLRRS 377 (397)
Q Consensus 362 ------~~~~~w~~~~~~l~~~ 377 (397)
-+.-+|+-+...+...
T Consensus 240 ~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 240 TANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred cccCCCCCCccHHHHHHHHHHH
Confidence 1345899887776554
No 193
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.32 E-value=0.00071 Score=62.98 Aligned_cols=117 Identities=22% Similarity=0.159 Sum_probs=65.5
Q ss_pred cchhhHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCc
Q 041476 158 GLESTFDKVWRCLVE----GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGW 233 (397)
Q Consensus 158 Gr~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (397)
++........+++.+ ...+-+.|+|+.|+|||.||..+++... ..-..+.++++ .+++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~---~~g~~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA---KKGVSSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEEH------HHHHHHHHHHHhc
Confidence 444444444555542 1346789999999999999999999983 22223455544 3555555554432
Q ss_pred ccCCCHHHHHHHHHHHhcCCcEEEEEecCCC--chhhh--hcCCCCCCCC-CCCcEEEEEcCC
Q 041476 234 LQNRSFEEKASGIFNLLSKMKFLLLLDDIWE--RIDLA--KMGVPFPASS-RNASKIVFTTRL 291 (397)
Q Consensus 234 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~--~l~~~l~~~~-~~gs~IlvTtR~ 291 (397)
.+..+. +. .+ .+-=||||||+.. ...|. ++...++... ..+..+|+||..
T Consensus 206 ---~~~~~~---l~-~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 ---GSVKEK---ID-AV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred ---CcHHHH---HH-Hh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 122222 22 22 2456999999963 34554 2332212211 234567777764
No 194
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.32 E-value=0.0016 Score=54.34 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM 218 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 218 (397)
++.|+|++|+||||++..+.... ...-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcch
Confidence 36799999999999999998887 2344567788776554
No 195
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.31 E-value=0.00097 Score=60.50 Aligned_cols=88 Identities=23% Similarity=0.334 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC-CeEEEEEeCCcC-CHHHHHHHHHHhhCcc-------c-CCCH-H--
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYF-DIVIWVVVSKDM-QLERIQQKIGERIGWL-------Q-NRSF-E-- 240 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~-~~~~-~-- 240 (397)
.-.-++|.|.+|+|||||++.+++.. ..+| +.++++-+.+.. ...++.+++...-... + .... .
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 44678999999999999999999987 2233 456666776654 4566666665532211 1 1111 1
Q ss_pred ---HHHHHHHHHh---cCCcEEEEEecCCC
Q 041476 241 ---EKASGIFNLL---SKMKFLLLLDDIWE 264 (397)
Q Consensus 241 ---~~~~~l~~~L---~~kr~LlVlDdv~~ 264 (397)
...-.+.+++ +++..||++||+-.
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1122345555 38899999999943
No 196
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0069 Score=53.35 Aligned_cols=196 Identities=15% Similarity=0.232 Sum_probs=107.1
Q ss_pred ccc-chhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 156 IVG-LESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 156 ~vG-r~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
.+| -+..+.+|.+.+.= .+++-+.++|++|.|||-||+.|+++. .+.|+.||..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---- 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---- 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH----
Confidence 455 46666666555421 367789999999999999999999886 2445667654
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHh----cCCcEEEEEecCCCc------------hh----hhhcCCCC-CCCCC
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLL----SKMKFLLLLDDIWER------------ID----LAKMGVPF-PASSR 280 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L----~~kr~LlVlDdv~~~------------~~----~~~l~~~l-~~~~~ 280 (397)
++.+..+ .+....+++.+ ..-+-+|++|++++. ++ .-++...+ -....
T Consensus 216 elvqk~i-----------gegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 216 ELVQKYI-----------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred HHHHHHh-----------hhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 2222211 11122233322 346789999988641 00 11111110 00223
Q ss_pred CCcEEEEEcCChhhhh--hh---ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 281 NASKIVFTTRLVDVCG--LM---EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 281 ~gs~IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
+.-+||..|..-++.. .+ .-+..++..+-+++.-.++++-+.-..+...--++..+++++.-..|.--.++.+=|
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vctea 364 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEA 364 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhh
Confidence 4567887766555532 11 234577888888887778877665433322233455555554433333334555555
Q ss_pred HhhcC--C---CChhHHHHHHHHH
Q 041476 356 RAMSS--K---KTPEEWSYAIQML 374 (397)
Q Consensus 356 ~~L~~--~---~~~~~w~~~~~~l 374 (397)
++.+- . -+.+.++-+....
T Consensus 365 gm~alrerrvhvtqedfemav~kv 388 (404)
T KOG0728|consen 365 GMYALRERRVHVTQEDFEMAVAKV 388 (404)
T ss_pred hHHHHHHhhccccHHHHHHHHHHH
Confidence 55432 2 2667777665543
No 197
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0024 Score=60.18 Aligned_cols=140 Identities=12% Similarity=0.112 Sum_probs=77.0
Q ss_pred cccchhhHHHHHHHHhc-CCceE-EEEEcCCCCcHHHHHHHHHhhhccCCC------------------CCCeEEEEEeC
Q 041476 156 IVGLESTFDKVWRCLVE-GQFGI-IGLYGMGGVGKTTLLAQINNKFLHTPN------------------YFDIVIWVVVS 215 (397)
Q Consensus 156 ~vGr~~~~~~l~~~L~~-~~~~v-i~I~G~~GvGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~vs 215 (397)
++|-+....++..+... ++.+. +.++|++|+||||+|..+.+....... ..+.+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 56777778888888774 44555 999999999999999999988721110 11233334333
Q ss_pred CcCC---HHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcC
Q 041476 216 KDMQ---LERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTR 290 (397)
Q Consensus 216 ~~~~---~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR 290 (397)
.... ..+..+++.+...... ..++.-+++||+++.. ..-+.+... .-.....+.+|++|.
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~--------------~~~~~kviiidead~mt~~A~nallk~-lEep~~~~~~il~~n 147 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESP--------------LEGGYKVVIIDEADKLTEDAANALLKT-LEEPPKNTRFILITN 147 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCC--------------CCCCceEEEeCcHHHHhHHHHHHHHHH-hccCCCCeEEEEEcC
Confidence 3332 2233333333222110 0356779999999753 223333332 222234567777666
Q ss_pred Ch-hhhhhh-ccCceeecCCCC
Q 041476 291 LV-DVCGLM-EAQKTFKVECLA 310 (397)
Q Consensus 291 ~~-~v~~~~-~~~~~~~l~~L~ 310 (397)
.. .+...+ +....+++.+.+
T Consensus 148 ~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 148 DPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred ChhhccchhhhcceeeecCCch
Confidence 33 333222 233456666633
No 198
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.26 E-value=0.00083 Score=57.37 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEE
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWV 212 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv 212 (397)
+..+|.+.|++|+||||+|+.+++.. ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 45699999999999999999999988 3445555555
No 199
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.015 Score=57.55 Aligned_cols=86 Identities=24% Similarity=0.253 Sum_probs=47.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHHhhCcc--cCCCHHHHHHHHHHHhc
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGERIGWL--QNRSFEEKASGIFNLLS 251 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~~l~~~--~~~~~~~~~~~l~~~L~ 251 (397)
..+++|+|++|+||||++..+.... ........+..++... .....+.+....+.++.. ...+...+...+.+ +.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 4799999999999999999988776 2122223445554322 112223333334444432 22333344443433 33
Q ss_pred CCcEEEEEecCC
Q 041476 252 KMKFLLLLDDIW 263 (397)
Q Consensus 252 ~kr~LlVlDdv~ 263 (397)
..=+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34588889874
No 200
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.26 E-value=0.00081 Score=69.98 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhc---------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVE---------GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.+..++.|.+.+.. .....+.++|++|+|||+||+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999988888888762 124578999999999999999998876
No 201
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.23 E-value=0.0021 Score=54.29 Aligned_cols=121 Identities=21% Similarity=0.201 Sum_probs=70.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE---------------------eCCc---------------
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVV---------------------VSKD--------------- 217 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~---------------------vs~~--------------- 217 (397)
.-..+.|+|++|.|||||.+.+|.... .-.+.+|+. |-++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~----pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEER----PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhc----CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 346899999999999999999998862 122334432 0111
Q ss_pred ------CCHHHHHHHHHHh---hCcc--------cCCCHHHHHHHHHHHhcCCcEEEEEecCC----CchhhhhcCCCCC
Q 041476 218 ------MQLERIQQKIGER---IGWL--------QNRSFEEKASGIFNLLSKMKFLLLLDDIW----ERIDLAKMGVPFP 276 (397)
Q Consensus 218 ------~~~~~i~~~i~~~---l~~~--------~~~~~~~~~~~l~~~L~~kr~LlVlDdv~----~~~~~~~l~~~l~ 276 (397)
....++-+..... .+.. .-..-++..-.+.+.+-+++-+|+=|+-- -...|+-+... -
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lf-e 181 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLF-E 181 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHH-H
Confidence 1122222222222 2221 11223344445666777889999999753 23344433222 3
Q ss_pred CCCCCCcEEEEEcCChhhhhhhc
Q 041476 277 ASSRNASKIVFTTRLVDVCGLME 299 (397)
Q Consensus 277 ~~~~~gs~IlvTtR~~~v~~~~~ 299 (397)
.-+..|+.||++|.+......+.
T Consensus 182 einr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 182 EINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHhhcCcEEEEEeccHHHHHhcc
Confidence 34567899999999998876653
No 202
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.22 E-value=0.0026 Score=59.42 Aligned_cols=89 Identities=21% Similarity=0.206 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccC---CCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----------cCCCH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHT---PNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-----------QNRSF 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~~~~~ 239 (397)
.-+++-|+|++|+|||+|+.+++-..... ...-..++||+....++++.+.+ +++.++.. ...+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 34688899999999999998876443110 11234789999999888887754 45555432 11233
Q ss_pred HHHH---HHHHHHhc-CCcEEEEEecCC
Q 041476 240 EEKA---SGIFNLLS-KMKFLLLLDDIW 263 (397)
Q Consensus 240 ~~~~---~~l~~~L~-~kr~LlVlDdv~ 263 (397)
++.. ..+...+. .+--|||+|.+-
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 3333 33333343 345589999884
No 203
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0069 Score=59.88 Aligned_cols=153 Identities=17% Similarity=0.213 Sum_probs=85.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKM 253 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~k 253 (397)
.+.-|.++||+|+|||-||+.|+|.. +-.| ++|-.+ +++..-. ..+......-.++.=..-
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkYV-------GESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKYV-------GESERAVRQVFQRARASA 604 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHHh-------hhHHHHHHHHHHHhhcCC
Confidence 45678899999999999999999997 3444 444332 2222111 112222222233333467
Q ss_pred cEEEEEecCCCc-------------hhhhhcCCCCC-CCCCCCcEEEEEcCChhhh--hhh---ccCceeecCCCChHhH
Q 041476 254 KFLLLLDDIWER-------------IDLAKMGVPFP-ASSRNASKIVFTTRLVDVC--GLM---EAQKTFKVECLADQDA 314 (397)
Q Consensus 254 r~LlVlDdv~~~-------------~~~~~l~~~l~-~~~~~gs~IlvTtR~~~v~--~~~---~~~~~~~l~~L~~~~~ 314 (397)
+|.|+||+++.. ...+.+..-+= .....|.-||-.|..+++- ..+ .-+..+-+..-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999999741 11222222200 1233466667655555442 111 2345677888888999
Q ss_pred HHHHHHHhCCcc--CCCCCChHHHHHHHHHHcCCc
Q 041476 315 WELFQKKVGEET--LESHPDIPELAQTVANECSGL 347 (397)
Q Consensus 315 ~~Lf~~~~~~~~--~~~~~~~~~~~~~I~~~c~Gl 347 (397)
..+++....... ...+-.+.+++.. .+|.|+
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 999988876322 2333455555542 345554
No 204
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.21 E-value=0.0067 Score=62.59 Aligned_cols=148 Identities=16% Similarity=0.139 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcE
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKF 255 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~ 255 (397)
+-+.|+|++|+|||++|+.+.... ...| +.++.+ ++.. + .. ..........+.......++
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------~~~~-~---~~---g~~~~~~~~~f~~a~~~~P~ 246 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------DFVE-M---FV---GVGASRVRDMFEQAKKAAPC 246 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------HhHH-h---hh---cccHHHHHHHHHHHHhcCCc
Confidence 458999999999999999998876 2233 222221 1111 0 00 11112222223333345789
Q ss_pred EEEEecCCCch------------h----hhhcCCCCCC-CCCCCcEEEEEcCChhhhh--hh---ccCceeecCCCChHh
Q 041476 256 LLLLDDIWERI------------D----LAKMGVPFPA-SSRNASKIVFTTRLVDVCG--LM---EAQKTFKVECLADQD 313 (397)
Q Consensus 256 LlVlDdv~~~~------------~----~~~l~~~l~~-~~~~gs~IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~~ 313 (397)
+|+||+++... . ...+...+-. ....+.-+|.||...+... .. ..+..+.+...+.++
T Consensus 247 IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 247 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred EEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHH
Confidence 99999986421 1 1111111000 1223455556776665422 11 234678888888888
Q ss_pred HHHHHHHHhCCccCCCCCChHHHHHHHHHHcCC
Q 041476 314 AWELFQKKVGEETLESHPDIPELAQTVANECSG 346 (397)
Q Consensus 314 ~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G 346 (397)
-.+++..+........+.+ ...+++.+.|
T Consensus 327 R~~Il~~~~~~~~l~~~~d----~~~la~~t~G 355 (644)
T PRK10733 327 REQILKVHMRRVPLAPDID----AAIIARGTPG 355 (644)
T ss_pred HHHHHHHHhhcCCCCCcCC----HHHHHhhCCC
Confidence 8888888764432112222 3446666666
No 205
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.20 E-value=0.0016 Score=61.48 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----------cCCCH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLH---TPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-----------QNRSF 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~~~~~ 239 (397)
.-++.-|+|++|+|||+|+.+++-.... ....-..++|++....|++.++.+ +++.++.. ...+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 3468889999999999999988643311 112235789999999999888665 45555432 22334
Q ss_pred HHHH---HHHHHHhc-CCcEEEEEecCC
Q 041476 240 EEKA---SGIFNLLS-KMKFLLLLDDIW 263 (397)
Q Consensus 240 ~~~~---~~l~~~L~-~kr~LlVlDdv~ 263 (397)
++.. ..+...+. .+--|||+|.+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 4333 33333343 345589999884
No 206
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.20 E-value=0.00093 Score=61.90 Aligned_cols=133 Identities=16% Similarity=0.196 Sum_probs=74.0
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEE-EE---EeCCc---------CCHHHH
Q 041476 157 VGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVI-WV---VVSKD---------MQLERI 223 (397)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~-wv---~vs~~---------~~~~~i 223 (397)
-+|+.+-.--+++|.++....|++.|.+|.|||-||....=...-.+..|..++ .- .++++ ..+.-.
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PW 306 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPW 306 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccch
Confidence 456677777888899999999999999999999888654322211233444322 11 12221 112222
Q ss_pred HHHHHHhhC---cccCCCHHHHHHHH----------HHHhcCC---cEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEE
Q 041476 224 QQKIGERIG---WLQNRSFEEKASGI----------FNLLSKM---KFLLLLDDIWER--IDLAKMGVPFPASSRNASKI 285 (397)
Q Consensus 224 ~~~i~~~l~---~~~~~~~~~~~~~l----------~~~L~~k---r~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~I 285 (397)
++.|...+. ...... ....+.+ -.+++|+ .-++|+|+..+. .+...+ +...+.||||
T Consensus 307 mq~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi----ltR~G~GsKI 381 (436)
T COG1875 307 MQAIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI----LTRAGEGSKI 381 (436)
T ss_pred HHHHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH----HHhccCCCEE
Confidence 333333222 111112 1122211 1123443 359999999764 444454 4456889999
Q ss_pred EEEcCChhh
Q 041476 286 VFTTRLVDV 294 (397)
Q Consensus 286 lvTtR~~~v 294 (397)
+.|---.++
T Consensus 382 Vl~gd~aQi 390 (436)
T COG1875 382 VLTGDPAQI 390 (436)
T ss_pred EEcCCHHHc
Confidence 998765443
No 207
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.18 E-value=0.00058 Score=55.81 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=32.2
Q ss_pred ccchhhHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 157 VGLESTFDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 157 vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
||....+.++.+.+.. .....|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666677777776654 445677899999999999999998876
No 208
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.18 E-value=0.0021 Score=68.26 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHHhc-------C--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVE-------G--QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.+..++.+.+.+.. . ....+.++|+.|+|||+||+.+++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999999999887752 1 23467799999999999999999876
No 209
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.17 E-value=0.0027 Score=63.27 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=41.7
Q ss_pred ccccchhhHHHHHHHHhcC-----CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE
Q 041476 155 TIVGLESTFDKVWRCLVEG-----QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVV 213 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 213 (397)
+++-..+-++++..||.+. ..+++.+.||+|+||||.++.+++.. .|+.+=|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 3555567788888888652 35799999999999999999999886 256666764
No 210
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.14 E-value=0.0025 Score=57.72 Aligned_cols=75 Identities=25% Similarity=0.246 Sum_probs=47.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKM 253 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~k 253 (397)
+..-+.++|++|+|||.||..+.+... ..--.+.+++ ..++++++...... .....+|.+.+. +
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~~------~~el~~~Lk~~~~~------~~~~~~l~~~l~-~ 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFIT------APDLLSKLKAAFDE------GRLEEKLLRELK-K 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhc------CchHHHHHHHhh-c
Confidence 567889999999999999999999982 2223344553 35666666655442 111222222221 2
Q ss_pred cEEEEEecCCC
Q 041476 254 KFLLLLDDIWE 264 (397)
Q Consensus 254 r~LlVlDdv~~ 264 (397)
-=||||||+-.
T Consensus 168 ~dlLIiDDlG~ 178 (254)
T COG1484 168 VDLLIIDDIGY 178 (254)
T ss_pred CCEEEEecccC
Confidence 34999999954
No 211
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.12 E-value=0.0037 Score=58.56 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----------cCCCH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLH---TPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-----------QNRSF 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~~~~~ 239 (397)
.-.++.|+|++|+|||+|+..++..... ....-..++|++....++...+ .++++.++.. ...+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCCh
Confidence 4578999999999999999998764310 1112236799998887777764 3445544332 11233
Q ss_pred HHH---HHHHHHHhc-CCcEEEEEecCC
Q 041476 240 EEK---ASGIFNLLS-KMKFLLLLDDIW 263 (397)
Q Consensus 240 ~~~---~~~l~~~L~-~kr~LlVlDdv~ 263 (397)
++. ...+...+. .+.-|||+|.+-
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 333 223333343 345688999874
No 212
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.11 E-value=0.0013 Score=66.07 Aligned_cols=72 Identities=25% Similarity=0.269 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhc--
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLS-- 251 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~-- 251 (397)
.-+++.++|++|.||||||+.++++. + -.++=|+.|..-+...+-..|...+... ..+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa----G--YsVvEINASDeRt~~~v~~kI~~avq~~-------------s~l~ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA----G--YSVVEINASDERTAPMVKEKIENAVQNH-------------SVLDAD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc----C--ceEEEecccccccHHHHHHHHHHHHhhc-------------cccccC
Confidence 34689999999999999999999886 1 1355567777766666666655544322 2232
Q ss_pred CCcEEEEEecCCC
Q 041476 252 KMKFLLLLDDIWE 264 (397)
Q Consensus 252 ~kr~LlVlDdv~~ 264 (397)
+++.-||+|+++.
T Consensus 386 srP~CLViDEIDG 398 (877)
T KOG1969|consen 386 SRPVCLVIDEIDG 398 (877)
T ss_pred CCcceEEEecccC
Confidence 5788899999975
No 213
>PRK04296 thymidine kinase; Provisional
Probab=97.10 E-value=0.00071 Score=58.60 Aligned_cols=109 Identities=16% Similarity=0.016 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-c---CCCHHHHHHHHHHHhc
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-Q---NRSFEEKASGIFNLLS 251 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-~---~~~~~~~~~~l~~~L~ 251 (397)
.++.|+|+.|.||||++..+..+.. .+-..++.+. ..++.......+++.++.. . .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4778999999999999999988872 2223333332 1112122233445555432 1 2233444444444 23
Q ss_pred CCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCChh
Q 041476 252 KMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLVD 293 (397)
Q Consensus 252 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~~ 293 (397)
++.-+||+|++.-. ++..++... + ...|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~-l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEV-L--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHH-H--HHcCCeEEEEecCcc
Confidence 34459999999532 222222221 1 245788999988844
No 214
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.0089 Score=56.22 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..-+.++|+.|+||||+|+.+....
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999998875
No 215
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.10 E-value=0.0055 Score=64.42 Aligned_cols=181 Identities=18% Similarity=0.217 Sum_probs=91.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhc--------c-----CCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFL--------H-----TPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFE 240 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~--------~-----~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (397)
+.+++.|+|+.+.||||+.+.+.-... . .-..|+ .++..++...++..-+..+..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~----------- 393 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSG----------- 393 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHH-----------
Confidence 457899999999999999998864310 0 011122 223333333222221111111
Q ss_pred HHHHHHHHHhc--CCcEEEEEecCCCchh---hhhcCCCCC-CCCCCCcEEEEEcCChhhhhhhccCcee---ecCCCCh
Q 041476 241 EKASGIFNLLS--KMKFLLLLDDIWERID---LAKMGVPFP-ASSRNASKIVFTTRLVDVCGLMEAQKTF---KVECLAD 311 (397)
Q Consensus 241 ~~~~~l~~~L~--~kr~LlVlDdv~~~~~---~~~l~~~l~-~~~~~gs~IlvTtR~~~v~~~~~~~~~~---~l~~L~~ 311 (397)
-...+...+. ..+-|++||++-...+ -..+...++ .....|+.+|+||...+..........+ .+.. +.
T Consensus 394 -~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~-d~ 471 (782)
T PRK00409 394 -HMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEF-DE 471 (782)
T ss_pred -HHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE-ec
Confidence 1111222222 4778999999964322 222211101 0112478999999998876544322211 1111 11
Q ss_pred HhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 041476 312 QDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSSKKTPEEWSYAIQMLRRS 377 (397)
Q Consensus 312 ~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~~l~~~ 377 (397)
+... |...+. .. .+ -...|-.|++++ |+|-.+.--|.-+.. ......+.+++.|...
T Consensus 472 -~~l~-~~Ykl~-~G--~~--g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~l~~~ 528 (782)
T PRK00409 472 -ETLR-PTYRLL-IG--IP--GKSNAFEIAKRL-GLPENIIEEAKKLIG-EDKEKLNELIASLEEL 528 (782)
T ss_pred -CcCc-EEEEEe-eC--CC--CCcHHHHHHHHh-CcCHHHHHHHHHHHh-hhhhHHHHHHHHHHHH
Confidence 1100 000110 01 11 134478888887 899999888877765 3455677777666543
No 216
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0038 Score=62.60 Aligned_cols=131 Identities=15% Similarity=0.082 Sum_probs=75.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKM 253 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~k 253 (397)
..+.+.++|++|.|||.||+.+++.. ..+|-.+.+ . +++.. . -..+.....+......+..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~----~l~sk----~---vGesek~ir~~F~~A~~~~ 335 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S----ELLSK----W---VGESEKNIRELFEKARKLA 335 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H----HHhcc----c---cchHHHHHHHHHHHHHcCC
Confidence 45689999999999999999999965 334432211 1 11110 0 0112222333333444578
Q ss_pred cEEEEEecCCCch-------------hhhhcCCCCCC--CCCCCcEEEEEcCChhhhh---hh--ccCceeecCCCChHh
Q 041476 254 KFLLLLDDIWERI-------------DLAKMGVPFPA--SSRNASKIVFTTRLVDVCG---LM--EAQKTFKVECLADQD 313 (397)
Q Consensus 254 r~LlVlDdv~~~~-------------~~~~l~~~l~~--~~~~gs~IlvTtR~~~v~~---~~--~~~~~~~l~~L~~~~ 313 (397)
++.|++|+++... ....+... .. ....+..||-||....... .. .-...+.+.+-+.++
T Consensus 336 p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~-~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 336 PSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTE-LDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CcEEEEEchhhhhccCCCCCchHHHHHHHHHHHH-hcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 9999999996421 11222222 11 2223344555555444322 11 235688999999999
Q ss_pred HHHHHHHHhCC
Q 041476 314 AWELFQKKVGE 324 (397)
Q Consensus 314 ~~~Lf~~~~~~ 324 (397)
..+.|+.+...
T Consensus 415 r~~i~~~~~~~ 425 (494)
T COG0464 415 RLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHhcc
Confidence 99999998864
No 217
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.07 E-value=0.00067 Score=67.20 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=39.8
Q ss_pred ccccchhhHHHHHHHHh------cCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 155 TIVGLESTFDKVWRCLV------EGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+++|.++.+++|++.|. +..-+++.++||+|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 46999999999999983 3456799999999999999999999876
No 218
>PRK08233 hypothetical protein; Provisional
Probab=97.06 E-value=0.0025 Score=54.49 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|+|.|++|+||||||+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999876
No 219
>PRK06696 uridine kinase; Validated
Probab=97.06 E-value=0.00091 Score=59.51 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=34.4
Q ss_pred cchhhHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 158 GLESTFDKVWRCLVE---GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 158 Gr~~~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|..-+++|.+.+.. +...+|+|.|.+|+||||||+.+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 356667777777653 467799999999999999999999887
No 220
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.06 E-value=0.003 Score=53.66 Aligned_cols=85 Identities=21% Similarity=0.184 Sum_probs=44.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHHhhCcc-----cCCCHHHHH-HHHHHH
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGERIGWL-----QNRSFEEKA-SGIFNL 249 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~~l~~~-----~~~~~~~~~-~~l~~~ 249 (397)
++.++|++|+||||++..++.... ..-..++.+.... .....+.+....+..+.. ...+..... +.+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~---~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK---KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 678999999999999999988772 2212333444322 112333344444444432 223333333 233333
Q ss_pred hcCCcEEEEEecCCC
Q 041476 250 LSKMKFLLLLDDIWE 264 (397)
Q Consensus 250 L~~kr~LlVlDdv~~ 264 (397)
+.+..-++|+|..-.
T Consensus 79 ~~~~~d~viiDt~g~ 93 (173)
T cd03115 79 REENFDVVIVDTAGR 93 (173)
T ss_pred HhCCCCEEEEECccc
Confidence 333333566777643
No 221
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.05 E-value=0.00072 Score=57.82 Aligned_cols=74 Identities=27% Similarity=0.323 Sum_probs=43.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKM 253 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~k 253 (397)
+..-+.|+|++|+|||.||..+.+.... .-..+.|++ ..+++..+-..-. ....... + +.+. +
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~------~~~L~~~l~~~~~---~~~~~~~---~-~~l~-~ 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFIT------ASDLLDELKQSRS---DGSYEEL---L-KRLK-R 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEE------HHHHHHHHHCCHC---CTTHCHH---H-HHHH-T
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEee------cCceecccccccc---ccchhhh---c-Cccc-c
Confidence 3467999999999999999999988732 222355554 3556666543221 1122222 2 2232 2
Q ss_pred cEEEEEecCCC
Q 041476 254 KFLLLLDDIWE 264 (397)
Q Consensus 254 r~LlVlDdv~~ 264 (397)
-=||||||+..
T Consensus 109 ~dlLilDDlG~ 119 (178)
T PF01695_consen 109 VDLLILDDLGY 119 (178)
T ss_dssp SSCEEEETCTS
T ss_pred ccEecccccce
Confidence 34888999964
No 222
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0016 Score=63.24 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=36.3
Q ss_pred ccccch---hhHHHHHHHHhcC--------C-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 155 TIVGLE---STFDKVWRCLVEG--------Q-FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 155 ~~vGr~---~~~~~l~~~L~~~--------~-~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++-|-| .|+++|++.|.+. + ++-|.++|++|.|||-||+.++-..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 345654 5788889998863 2 4678999999999999999999887
No 223
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.03 E-value=0.006 Score=59.50 Aligned_cols=58 Identities=26% Similarity=0.277 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHHhhCcc
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGERIGWL 234 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~~l~~~ 234 (397)
.+.+|.++|++|+||||++..++... ...+ + .+..|++.. .+...+.+..++++++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 46799999999999999999999887 3222 2 334344322 123345566666666543
No 224
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.03 E-value=0.0055 Score=51.02 Aligned_cols=113 Identities=19% Similarity=0.126 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe---CCcCCHHHHHHHHHHhhC-----cc---cCCCHHH---
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVV---SKDMQLERIQQKIGERIG-----WL---QNRSFEE--- 241 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~v---s~~~~~~~i~~~i~~~l~-----~~---~~~~~~~--- 241 (397)
+.|-|++..|.||||+|.-..-+.. .+=..+.++.. ........+++.+- .+. .. ...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~---~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL---GHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 5788899999999999988877762 22223444332 22334444444431 110 00 0111111
Q ss_pred ----HHHHHHHHhcCCcE-EEEEecCCC-----chhhhhcCCCCCCCCCCCcEEEEEcCChh
Q 041476 242 ----KASGIFNLLSKMKF-LLLLDDIWE-----RIDLAKMGVPFPASSRNASKIVFTTRLVD 293 (397)
Q Consensus 242 ----~~~~l~~~L~~kr~-LlVlDdv~~-----~~~~~~l~~~l~~~~~~gs~IlvTtR~~~ 293 (397)
..+..++.+....| |||||++-. ....+.+... +.....+..+|+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~l-l~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDL-LKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHH-HHcCCCCCEEEEECCCCC
Confidence 22233444445444 999999853 2233333333 444455678999999855
No 225
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.99 E-value=0.0075 Score=56.71 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=55.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCC----CCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----------cCCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPN----YFDIVIWVVVSKDMQLERIQQKIGERIGWL-----------QNRS 238 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~~~~ 238 (397)
...++-|+|++|+|||+++.+++-.. .... .-..++||+....+++..+.+. ++.++.. ...+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcCCChHhhhccEEEEeCCC
Confidence 45788999999999999999998664 1111 1147999999988887776543 3333321 1111
Q ss_pred H---HHHHHHHHHHhcC--CcEEEEEecCC
Q 041476 239 F---EEKASGIFNLLSK--MKFLLLLDDIW 263 (397)
Q Consensus 239 ~---~~~~~~l~~~L~~--kr~LlVlDdv~ 263 (397)
. ......+...+.. +--|||+|-+-
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSis 208 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSLT 208 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECch
Confidence 1 1234455555543 34489999874
No 226
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.99 E-value=0.11 Score=49.72 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=40.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe-CCcCCHHHHHHHHHHhhCcc
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVV-SKDMQLERIQQKIGERIGWL 234 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~v-s~~~~~~~i~~~i~~~l~~~ 234 (397)
.+.+|..+|.-|.||||.+-.+++.+. .+=..+.-|++ ...+...+-++.++++++.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk---k~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK---KKGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH---HcCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 467999999999999999999999982 21122233332 23345566777888887765
No 227
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.99 E-value=0.0029 Score=53.96 Aligned_cols=120 Identities=16% Similarity=0.107 Sum_probs=61.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccC--C---CCCC--eEEEEEeCCcCCHHHHHHHHHHhhCcc--------cCCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHT--P---NYFD--IVIWVVVSKDMQLERIQQKIGERIGWL--------QNRS 238 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~--~---~~f~--~~~wv~vs~~~~~~~i~~~i~~~l~~~--------~~~~ 238 (397)
.-.+++|+|+.|+|||||.+.+..+...+ . ..|. .+.|+ .+ .+.+..++.. ...+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999986432110 0 1111 12232 21 2344444432 1111
Q ss_pred H-HHHHHHHHHHhcCC--cEEEEEecCCCc---hhhhhcCCCCCCC-CCCCcEEEEEcCChhhhhhhccCceeec
Q 041476 239 F-EEKASGIFNLLSKM--KFLLLLDDIWER---IDLAKMGVPFPAS-SRNASKIVFTTRLVDVCGLMEAQKTFKV 306 (397)
Q Consensus 239 ~-~~~~~~l~~~L~~k--r~LlVlDdv~~~---~~~~~l~~~l~~~-~~~gs~IlvTtR~~~v~~~~~~~~~~~l 306 (397)
. +...-.+...+-.+ +=++++|+.-+. .....+... +.. ...|..||++|.+...... .+..+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~-l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEV-IKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1 22223344555566 778899998542 222222221 111 1236678888888776532 4444444
No 228
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.0045 Score=58.87 Aligned_cols=87 Identities=23% Similarity=0.255 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-CCHHHHHHHHHHhhCcc--cCCCHHHHHHHHHHHh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD-MQLERIQQKIGERIGWL--QNRSFEEKASGIFNLL 250 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~i~~~i~~~l~~~--~~~~~~~~~~~l~~~L 250 (397)
+.++|+|+|++|+||||++..++... . ..-..+..+..... ....+-+....+.++.+ ...+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 34799999999999999999998876 2 11123444443221 12233344444444444 2345555555454433
Q ss_pred cC-CcEEEEEecCC
Q 041476 251 SK-MKFLLLLDDIW 263 (397)
Q Consensus 251 ~~-kr~LlVlDdv~ 263 (397)
.. +-=+|++|-..
T Consensus 317 ~~~~~DvVLIDTaG 330 (436)
T PRK11889 317 EEARVDYILIDTAG 330 (436)
T ss_pred hccCCCEEEEeCcc
Confidence 22 23477888764
No 229
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.0026 Score=52.23 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=33.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL 234 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 234 (397)
+|.|-|++|+||||+|+.+.++.. -.| + +.-.++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g---l~~-------v----saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG---LKL-------V----SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC---Cce-------e----eccHHHHHHHHHcCCC
Confidence 689999999999999999999972 111 1 2346788888887764
No 230
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.96 E-value=0.0045 Score=57.08 Aligned_cols=86 Identities=27% Similarity=0.288 Sum_probs=47.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-CCHHHHHHHHHHhhCcc--cCCCHHHHHHHHHHHh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD-MQLERIQQKIGERIGWL--QNRSFEEKASGIFNLL 250 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~i~~~i~~~l~~~--~~~~~~~~~~~l~~~L 250 (397)
..+++.|+|+.|+||||++..++... .....-..+..|+.... ....+.+....+.++.. ...+...+...+.. +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-L 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-c
Confidence 35799999999999999999998876 21111124555554321 12233334444444433 22333444433433 3
Q ss_pred cCCcEEEEEecC
Q 041476 251 SKMKFLLLLDDI 262 (397)
Q Consensus 251 ~~kr~LlVlDdv 262 (397)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 347777753
No 231
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.95 E-value=0.03 Score=52.90 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=34.1
Q ss_pred cccchhhHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 156 IVGLESTFDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 156 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++|....+.++.+.+.. .....|.|+|..|+||+++|+.+++.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 46777777777776643 344567899999999999999998765
No 232
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.94 E-value=0.0063 Score=55.53 Aligned_cols=122 Identities=19% Similarity=0.086 Sum_probs=68.6
Q ss_pred hHHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE---eCCcCCHHHHHHHHHHhhCcc---
Q 041476 162 TFDKVWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVV---VSKDMQLERIQQKIGERIGWL--- 234 (397)
Q Consensus 162 ~~~~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~---vs~~~~~~~i~~~i~~~l~~~--- 234 (397)
..+.++..|.+ +....+.|+|+.|+|||||.+.+..... .....+++. +.......+ +......-
T Consensus 97 ~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~~e----i~~~~~~~~q~ 168 (270)
T TIGR02858 97 AADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDERSE----IAGCVNGVPQH 168 (270)
T ss_pred cHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhHHH----HHHHhcccccc
Confidence 34445555543 4457899999999999999999998762 223333332 111111122 22222111
Q ss_pred ------cCCCHHHHHHHHHHHhc-CCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhh
Q 041476 235 ------QNRSFEEKASGIFNLLS-KMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVC 295 (397)
Q Consensus 235 ------~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~ 295 (397)
+..+.......+...+. ..+-++++|++-....+..+... + ..|..+|+||....+.
T Consensus 169 ~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~-~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 169 DVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEA-L---HAGVSIIATAHGRDVE 232 (270)
T ss_pred cccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHH-H---hCCCEEEEEechhHHH
Confidence 00111111223333333 57889999999776666665444 2 2477899999976653
No 233
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.94 E-value=0.0045 Score=52.92 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|.|+.|+|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44689999999999999999998775
No 234
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.0011 Score=54.40 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|.|++|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 458899999999999999999988
No 235
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.92 E-value=0.0097 Score=56.19 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=55.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----------cCCCH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLH---TPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-----------QNRSF 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~~~~~ 239 (397)
.-.++-|+|++|+|||+|+..++-.... ....-..++|++....++++++. +|++.++.. ...+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCH
Confidence 3568889999999999999988754310 01122379999999998887764 455555432 12233
Q ss_pred HHHHHHH---HHHhc-CCcEEEEEecCC
Q 041476 240 EEKASGI---FNLLS-KMKFLLLLDDIW 263 (397)
Q Consensus 240 ~~~~~~l---~~~L~-~kr~LlVlDdv~ 263 (397)
++....+ ...+. .+.-|||+|-+-
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 3333222 22233 355689999874
No 236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.92 E-value=0.0065 Score=56.97 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=40.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccC---CCCCCeEEEEEeCCcCCHHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHT---PNYFDIVIWVVVSKDMQLERIQQKIGERI 231 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~i~~~i~~~l 231 (397)
.-.++-|+|++|+|||+++.+++-..... ...-..++||+....++...+.+. ++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~-~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM-AEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH-HHHc
Confidence 35788999999999999999997765110 111237999999988887765543 4433
No 237
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.91 E-value=0.0051 Score=59.82 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+.++.++|++|+||||++..++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999998887765
No 238
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0053 Score=55.07 Aligned_cols=122 Identities=18% Similarity=0.109 Sum_probs=70.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-----cCCHHHHHHHHHHhhCcc--------cCCC-H
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-----DMQLERIQQKIGERIGWL--------QNRS-F 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-----~~~~~~i~~~i~~~l~~~--------~~~~-~ 239 (397)
+-.+++|+|.+|+|||||++.+..-. .... +.+++.-.+ .....+-..++++..+.. ...+ -
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45689999999999999999998776 2223 333333111 222334455566665543 1112 2
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCCCchh---hhhcCCCCCC--CCCCCcEEEEEcCChhhhhhhcc
Q 041476 240 EEKASGIFNLLSKMKFLLLLDDIWERID---LAKMGVPFPA--SSRNASKIVFTTRLVDVCGLMEA 300 (397)
Q Consensus 240 ~~~~~~l~~~L~~kr~LlVlDdv~~~~~---~~~l~~~l~~--~~~~gs~IlvTtR~~~v~~~~~~ 300 (397)
+.-.-.+.+.|.-++-|+|.|+.-+.-+ ...+... +. ....|...++-|.+-.+...+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnL-L~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNL-LKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHH-HHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 2223346778888999999998754211 1111111 10 11235567777888777766543
No 239
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.90 E-value=0.0093 Score=51.77 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=45.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCC---eEEEEEeCCcCCHHHHHHHHHHh---hC--cccCCCHHHHHHHHHH
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKFLHTPNYFD---IVIWVVVSKDMQLERIQQKIGER---IG--WLQNRSFEEKASGIFN 248 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~---~~~wv~vs~~~~~~~i~~~i~~~---l~--~~~~~~~~~~~~~l~~ 248 (397)
||+|.|++|+||||+|+.+..... . .... ....++.............-... .. .....+.+.+.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~-~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN-K-RGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-T-CTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-c-cCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 689999999999999999999882 1 2222 23333333222222222221111 11 1145667777777777
Q ss_pred HhcCCcEEE
Q 041476 249 LLSKMKFLL 257 (397)
Q Consensus 249 ~L~~kr~Ll 257 (397)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 766665444
No 240
>PRK10867 signal recognition particle protein; Provisional
Probab=96.89 E-value=0.0055 Score=59.65 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+.+|.++|++|+||||++..++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999888887765
No 241
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.89 E-value=0.032 Score=56.51 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=38.8
Q ss_pred CCccccchhhHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 153 QPTIVGLESTFDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...++|....+.++.+.+.. .....|.|+|..|+|||++|+.+++..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 35689999999988887754 334567899999999999999999875
No 242
>PTZ00035 Rad51 protein; Provisional
Probab=96.89 E-value=0.016 Score=54.80 Aligned_cols=89 Identities=21% Similarity=0.194 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----------cCCCH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLH---TPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-----------QNRSF 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~~~~~ 239 (397)
.-.++.|+|++|+|||+|+..++-.... ....-..++|++....+++..+ .++++.++.. ...+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 4568999999999999999988755410 0112346779998887777663 3445544332 22333
Q ss_pred HHHHHHH---HHHhc-CCcEEEEEecCC
Q 041476 240 EEKASGI---FNLLS-KMKFLLLLDDIW 263 (397)
Q Consensus 240 ~~~~~~l---~~~L~-~kr~LlVlDdv~ 263 (397)
++....+ ...+. .+--|||+|-+.
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 3333333 33333 345689999884
No 243
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.88 E-value=0.0042 Score=53.25 Aligned_cols=117 Identities=18% Similarity=0.186 Sum_probs=62.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC--CcCCHHHHHH------HHHHhhCcc-------cCCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVS--KDMQLERIQQ------KIGERIGWL-------QNRS 238 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs--~~~~~~~i~~------~i~~~l~~~-------~~~~ 238 (397)
+-.+++|.|+.|+|||||++.+.... ......+++.-. ...+...... ++++.++.. ...+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 44689999999999999999998765 223344444211 1112222211 134444332 1112
Q ss_pred -HHHHHHHHHHHhcCCcEEEEEecCCCc---hhhhhcCCCCCCC-CCC-CcEEEEEcCChhhh
Q 041476 239 -FEEKASGIFNLLSKMKFLLLLDDIWER---IDLAKMGVPFPAS-SRN-ASKIVFTTRLVDVC 295 (397)
Q Consensus 239 -~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~-~~~-gs~IlvTtR~~~v~ 295 (397)
-+...-.+.+.+-..+-++++|+.-+. .....+... +.. ... +..||++|.+....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~-l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL-LRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHH
Confidence 222333455666678889999998532 222222222 111 112 56788888876654
No 244
>PRK06547 hypothetical protein; Provisional
Probab=96.86 E-value=0.0018 Score=55.01 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=27.9
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 166 VWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 166 l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+...+......+|.|.|++|+||||+|+.+.+..
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344555677899999999999999999998875
No 245
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0038 Score=64.25 Aligned_cols=151 Identities=15% Similarity=0.235 Sum_probs=85.2
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcc--CCCCC--CeEEEEEeCCcCCHHHHHHHHHHh
Q 041476 155 TIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLH--TPNYF--DIVIWVVVSKDMQLERIQQKIGER 230 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~--~~~~f--~~~~wv~vs~~~~~~~i~~~i~~~ 230 (397)
.++||++|+.++++.|....-.--.++|.+|||||+++.-++.+... +.... ..++-+. +..-
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD-------------~g~L 237 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD-------------LGSL 237 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec-------------HHHH
Confidence 47999999999999998643333346899999999999888777621 11111 1111111 1111
Q ss_pred hCcc-cCCCHHHHHHHHHHHhc-CCcEEEEEecCCCc-------h-hh--hhc-CCCCCCCCCCCcEEEEEcCChhhhhh
Q 041476 231 IGWL-QNRSFEEKASGIFNLLS-KMKFLLLLDDIWER-------I-DL--AKM-GVPFPASSRNASKIVFTTRLVDVCGL 297 (397)
Q Consensus 231 l~~~-~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~-------~-~~--~~l-~~~l~~~~~~gs~IlvTtR~~~v~~~ 297 (397)
..+. ...+.++....+-+.++ .++.+|++|.+... . .. ..+ .++ +..+ .-+.|-.|...+.-..
T Consensus 238 vAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPa-LARG--eL~~IGATT~~EYRk~ 314 (786)
T COG0542 238 VAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPA-LARG--ELRCIGATTLDEYRKY 314 (786)
T ss_pred hccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHH-HhcC--CeEEEEeccHHHHHHH
Confidence 1111 22344444444444443 45899999998642 1 11 122 222 2221 2455544444443222
Q ss_pred h-------ccCceeecCCCChHhHHHHHHHH
Q 041476 298 M-------EAQKTFKVECLADQDAWELFQKK 321 (397)
Q Consensus 298 ~-------~~~~~~~l~~L~~~~~~~Lf~~~ 321 (397)
+ .-.+.+.+...+.+++..+++..
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 2 23468899999999999988654
No 246
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.83 E-value=0.0088 Score=53.41 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++..+++|.|++|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999887
No 247
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.80 E-value=0.0031 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999986
No 248
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.80 E-value=0.0011 Score=53.15 Aligned_cols=22 Identities=36% Similarity=0.764 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|.|.|++|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998883
No 249
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.80 E-value=0.013 Score=52.55 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------------------
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL------------------- 234 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~------------------- 234 (397)
.-+++.|.|++|+|||++|.++..... ..-..++|++... ++.++.+.+.+ ++..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~~~-~g~~~~~~~~~g~l~~~d~~~~~ 93 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNMAQ-FGWDVRKYEEEGKFAIVDAFTGG 93 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHHHH-hCCCHHHHhhcCCEEEEeccccc
Confidence 457999999999999999998766541 2345678888755 34555554332 2110
Q ss_pred -------------cCCCHHHHHHHHHHHhcC-CcEEEEEecCCC
Q 041476 235 -------------QNRSFEEKASGIFNLLSK-MKFLLLLDDIWE 264 (397)
Q Consensus 235 -------------~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~ 264 (397)
...+..+....+.+.++. +.-++|+|.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 94 IGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 113455566666666543 444799999753
No 250
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.031 Score=50.69 Aligned_cols=91 Identities=21% Similarity=0.356 Sum_probs=59.3
Q ss_pred CccccchhhHHHHHHHHh----------c--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCLV----------E--GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~----------~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
+++-|.+...+.|.+... . ...+-|.++|++|.||+.||+.|+... ... |++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nST-----FFSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NST-----FFSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCc-----eEEeehH----
Confidence 356788877777777642 1 146789999999999999999999886 222 3344432
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHhc-CCcEEEEEecCCC
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLLS-KMKFLLLLDDIWE 264 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~ 264 (397)
++... .++ ..+.+...|.+.-+ .|+-+|++|++++
T Consensus 201 DLvSK---WmG-----ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 DLVSK---WMG-----ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HHHHH---Hhc-----cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 11111 111 23445555655544 6899999999974
No 251
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.79 E-value=0.0029 Score=53.26 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=60.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC--cCCHHHHHHHHHHhhCcc-cCCCHHHHHHHHHHHh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK--DMQLERIQQKIGERIGWL-QNRSFEEKASGIFNLL 250 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~--~~~~~~i~~~i~~~l~~~-~~~~~~~~~~~l~~~L 250 (397)
.-.+++|.|+.|+|||||.+.+.... ......+++.-.. ..+..+.. .+.++.. +-..-+...-.+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~qLS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDAR---RAGIAMVYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHH---hcCeEEEEecCHHHHHHHHHHHHH
Confidence 34689999999999999999998765 2334445543211 11111111 1111111 1112223333455666
Q ss_pred cCCcEEEEEecCCCc---hhhhhcCCCCCCCCCCCcEEEEEcCChhhh
Q 041476 251 SKMKFLLLLDDIWER---IDLAKMGVPFPASSRNASKIVFTTRLVDVC 295 (397)
Q Consensus 251 ~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~ 295 (397)
-.++-++++|+.-+. .....+...+......|..||++|.+....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 677889999998542 222222211001112356788888876643
No 252
>PRK14974 cell division protein FtsY; Provisional
Probab=96.78 E-value=0.012 Score=55.33 Aligned_cols=86 Identities=21% Similarity=0.194 Sum_probs=48.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC--CHHHHHHHHHHhhCcc-----cCCCHHHHH-HH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM--QLERIQQKIGERIGWL-----QNRSFEEKA-SG 245 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~i~~~i~~~l~~~-----~~~~~~~~~-~~ 245 (397)
++.++.++|++|+||||++..++... .. ..+ .++.+.. ..+ ...+-++..+..++.. ...+..... +.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~~-~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-KK-NGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-HH-cCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 46899999999999999998888776 22 223 3333432 222 2334456666666643 122322222 22
Q ss_pred HHHHhcCCcEEEEEecCC
Q 041476 246 IFNLLSKMKFLLLLDDIW 263 (397)
Q Consensus 246 l~~~L~~kr~LlVlDdv~ 263 (397)
+........=+|++|-..
T Consensus 215 i~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHHhCCCCEEEEECCC
Confidence 222111222389999874
No 253
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.77 E-value=0.007 Score=53.24 Aligned_cols=93 Identities=23% Similarity=0.346 Sum_probs=57.5
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-CCHHHHHHHHHHhhCcc-------c-
Q 041476 166 VWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD-MQLERIQQKIGERIGWL-------Q- 235 (397)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~i~~~i~~~l~~~-------~- 235 (397)
.++.|.. ..-.-+.|.|.+|+|||+|+..+.+.. .-+..+++.+++. ....++.+++...-... +
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~ 79 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS 79 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc
Confidence 3444443 234678999999999999999999986 1334488888765 45667777765431111 1
Q ss_pred CCCHHH------HHHHHHHHh--cCCcEEEEEecCC
Q 041476 236 NRSFEE------KASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 236 ~~~~~~------~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
...... ..-.+.+++ +++..|+++||+-
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhH
Confidence 111111 111122333 5899999999983
No 254
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.76 E-value=0.013 Score=56.16 Aligned_cols=81 Identities=25% Similarity=0.313 Sum_probs=50.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++.. -++.++.. ...+.+++.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQIKL-RADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 346999999999999999999988762 22346778776543 333322 23344432 223334333333
Q ss_pred HHHhcCCcEEEEEecCC
Q 041476 247 FNLLSKMKFLLLLDDIW 263 (397)
Q Consensus 247 ~~~L~~kr~LlVlDdv~ 263 (397)
. ..+.-+||+|.+.
T Consensus 155 ~---~~~~~lVVIDSIq 168 (372)
T cd01121 155 E---ELKPDLVIIDSIQ 168 (372)
T ss_pred H---hcCCcEEEEcchH
Confidence 2 2467799999984
No 255
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.76 E-value=0.0075 Score=47.78 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=33.8
Q ss_pred ccccchhhHHHHHHHHh----c---CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 155 TIVGLESTFDKVWRCLV----E---GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~----~---~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|..-..+.+++.+. + .++-|++.+|.+|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46776655555555554 2 245699999999999999999998884
No 256
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.75 E-value=0.0028 Score=58.01 Aligned_cols=87 Identities=22% Similarity=0.327 Sum_probs=47.8
Q ss_pred HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHh-hCcccCCCHHHH
Q 041476 164 DKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGER-IGWLQNRSFEEK 242 (397)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~-l~~~~~~~~~~~ 242 (397)
..+++.+...+ +-+.++|+.|+|||++++...... . ...| ...-++.+...+...+ +.+++. +.... ..
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~-~~---- 92 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQL-QKIIESKLEKRR-GR---- 92 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHH-HHCCCTTECECT-TE----
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHH-HHHHhhcEEcCC-CC----
Confidence 44555555544 566899999999999999988765 2 1221 2344555554443333 333222 11100 00
Q ss_pred HHHHHHHhcCCcEEEEEecCC
Q 041476 243 ASGIFNLLSKMKFLLLLDDIW 263 (397)
Q Consensus 243 ~~~l~~~L~~kr~LlVlDdv~ 263 (397)
.-.--.+|++++++||+.
T Consensus 93 ---~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 93 ---VYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp ---EEEEESSSEEEEEEETTT
T ss_pred ---CCCCCCCcEEEEEecccC
Confidence 000013688999999985
No 257
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.75 E-value=0.0052 Score=63.66 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
.-+++-|.|++|+|||||+.+++.... ..-..++|+.....++.. .+++++.. ...+.++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 457889999999999999988766551 233567899888777643 55666543 344556666666
Q ss_pred HHHhcC-CcEEEEEecCC
Q 041476 247 FNLLSK-MKFLLLLDDIW 263 (397)
Q Consensus 247 ~~~L~~-kr~LlVlDdv~ 263 (397)
...++. +.-|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 666654 56699999875
No 258
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.0072 Score=57.55 Aligned_cols=86 Identities=20% Similarity=0.202 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHHhhCcc--cCCCHHHHHHHHHHHhc
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGERIGWL--QNRSFEEKASGIFNLLS 251 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~~l~~~--~~~~~~~~~~~l~~~L~ 251 (397)
..++.++|+.|+||||++.++..... .......+..++... .....+-++...+.++.. ...+..++...+. .+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hhc
Confidence 47999999999999999999998761 111123455555322 234456666666666654 2222233333333 344
Q ss_pred CCcEEEEEecCC
Q 041476 252 KMKFLLLLDDIW 263 (397)
Q Consensus 252 ~kr~LlVlDdv~ 263 (397)
++ -+|++|..-
T Consensus 215 ~~-DlVLIDTaG 225 (374)
T PRK14722 215 NK-HMVLIDTIG 225 (374)
T ss_pred CC-CEEEEcCCC
Confidence 44 456699884
No 259
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.74 E-value=0.0092 Score=54.43 Aligned_cols=88 Identities=20% Similarity=0.135 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCc---ccCCCHHHH---HHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGW---LQNRSFEEK---ASGIF 247 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~---~~~~~~~~~---~~~l~ 247 (397)
.-+++=|+|+.|+||||+|.+++-.. +..-..++|++..+.+++..+.+--...+.. ....+.++. ++.+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 34688899999999999999987776 3444589999999999877654433331222 133444433 33444
Q ss_pred HHhcCCcEEEEEecCCC
Q 041476 248 NLLSKMKFLLLLDDIWE 264 (397)
Q Consensus 248 ~~L~~kr~LlVlDdv~~ 264 (397)
.....+--|+|+|.+-.
T Consensus 136 ~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 136 RSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HhccCCCCEEEEecCcc
Confidence 44444456999999853
No 260
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.73 E-value=0.0095 Score=55.46 Aligned_cols=83 Identities=20% Similarity=0.166 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
.-+++-|+|+.|+||||||..+.... +..-..++|+.....+++. .++.++.. .+...++..+.+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 34699999999999999999988876 2335678999998877653 23333332 445566666666
Q ss_pred HHHhcCC-cEEEEEecCCC
Q 041476 247 FNLLSKM-KFLLLLDDIWE 264 (397)
Q Consensus 247 ~~~L~~k-r~LlVlDdv~~ 264 (397)
...++.. --++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 7777654 35899999865
No 261
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.012 Score=53.10 Aligned_cols=199 Identities=18% Similarity=0.204 Sum_probs=101.2
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 155 TIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
++=|-+..+.+|.+...= ..++-|.++|.+|.|||-||+.|+|.- ...|- +
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT---SATFl-------------R 249 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT---SATFL-------------R 249 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc---chhhh-------------h
Confidence 345677788888776531 145678899999999999999999986 23332 1
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHhc-CCcEEEEEecCCCc-------------h---hhhhcCCCC-CCCCCCCc
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLLS-KMKFLLLLDDIWER-------------I---DLAKMGVPF-PASSRNAS 283 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~-------------~---~~~~l~~~l-~~~~~~gs 283 (397)
-+-.++++.. ..+-..+...+.+.-. .-+-++++|+++.. + ..-++...+ -.+.....
T Consensus 250 vvGseLiQky----lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDv 325 (440)
T KOG0726|consen 250 VVGSELIQKY----LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325 (440)
T ss_pred hhhHHHHHHH----hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCe
Confidence 1222222221 1133445555555443 46788999988620 0 011111110 01334457
Q ss_pred EEEEEcCChhhhh--hhc---cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhh
Q 041476 284 KIVFTTRLVDVCG--LME---AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAM 358 (397)
Q Consensus 284 ~IlvTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 358 (397)
+||+.|..-+... .+. -+..|+...-++.--..+|.-+........+-.++++...==...|---.||.+=|++|
T Consensus 326 KvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGll 405 (440)
T KOG0726|consen 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLL 405 (440)
T ss_pred EEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHH
Confidence 8887665443311 111 23344444444444445555443332222233333332222222344455666667776
Q ss_pred cCC-----CChhHHHHHHHH
Q 041476 359 SSK-----KTPEEWSYAIQM 373 (397)
Q Consensus 359 ~~~-----~~~~~w~~~~~~ 373 (397)
+-. -+.+.++.+.+.
T Consensus 406 AlRerRm~vt~~DF~ka~e~ 425 (440)
T KOG0726|consen 406 ALRERRMKVTMEDFKKAKEK 425 (440)
T ss_pred HHHHHHhhccHHHHHHHHHH
Confidence 542 255666665544
No 262
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.71 E-value=0.0086 Score=50.82 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|.|+.|.|||||.+.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44689999999999999999998875
No 263
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.71 E-value=0.0083 Score=52.82 Aligned_cols=62 Identities=10% Similarity=0.138 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCcEEEEEecCCCc------hhhhhcCCCCCCCCCCCcEEEEEcCChhhhhhhccCceeec
Q 041476 241 EKASGIFNLLSKMKFLLLLDDIWER------IDLAKMGVPFPASSRNASKIVFTTRLVDVCGLMEAQKTFKV 306 (397)
Q Consensus 241 ~~~~~l~~~L~~kr~LlVlDdv~~~------~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~l 306 (397)
+..-.+.+.|-..+-+|+-|+--.. ....++... .....|.-||+.|.+..++..+ +.++.+
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~--~~~~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRE--LNKERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHH--HHHhcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 3344566777778889999986421 112222111 1223477899999999998753 344443
No 264
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.70 E-value=0.0012 Score=56.63 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+|.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998876
No 265
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.054 Score=47.93 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.++-|.++|++|.|||-||+.|+++.
T Consensus 187 dpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 467889999999999999999999986
No 266
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.70 E-value=0.0077 Score=53.89 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=67.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCC----------CC---CeEEEEEeCC----cC--CH---------------
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPN----------YF---DIVIWVVVSK----DM--QL--------------- 220 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----------~f---~~~~wv~vs~----~~--~~--------------- 220 (397)
-.+++|+||.|.|||||.+.+..-.....+ .+ ..+.||+-.. .+ ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 378999999999999999999874311000 01 2456664211 11 11
Q ss_pred -------HHHHHHHHHhhCcc-------cCCCH-HHHHHHHHHHhcCCcEEEEEecCCCc------hhhhhcCCCCCCCC
Q 041476 221 -------ERIQQKIGERIGWL-------QNRSF-EEKASGIFNLLSKMKFLLLLDDIWER------IDLAKMGVPFPASS 279 (397)
Q Consensus 221 -------~~i~~~i~~~l~~~-------~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~~------~~~~~l~~~l~~~~ 279 (397)
.+...+.++.++.. ...+- +...-.|.+.|..++=||+||+--.. ...-++... +..
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~-l~~- 187 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE-LRQ- 187 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHH-HHH-
Confidence 13334444444432 12222 23334566778888999999986431 223333222 222
Q ss_pred CCCcEEEEEcCChhhhh
Q 041476 280 RNASKIVFTTRLVDVCG 296 (397)
Q Consensus 280 ~~gs~IlvTtR~~~v~~ 296 (397)
.|.-||+.|.+-+...
T Consensus 188 -eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 188 -EGKTVLMVTHDLGLVM 203 (254)
T ss_pred -CCCEEEEEeCCcHHhH
Confidence 2888999999876543
No 267
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.69 E-value=0.0026 Score=62.12 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++||++.++.+...+..+ ..|.|.|++|+|||+||+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 45899999999999888654 578899999999999999999876
No 268
>PRK07667 uridine kinase; Provisional
Probab=96.68 E-value=0.0028 Score=55.01 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=29.5
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 163 FDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 163 ~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+.|.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666654 345699999999999999999999877
No 269
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.67 E-value=0.0046 Score=50.41 Aligned_cols=43 Identities=30% Similarity=0.317 Sum_probs=31.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHH
Q 041476 178 IGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQK 226 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~ 226 (397)
|.|+|++|+|||+||+.+++.. . ....-+.++...+..+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEeccccccccceee
Confidence 6799999999999999999887 1 12344677777777766543
No 270
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.67 E-value=0.0083 Score=50.60 Aligned_cols=114 Identities=16% Similarity=0.094 Sum_probs=62.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEE---EEEeCCcCCHHHHHHHHHHhhCcc--------cCCC-----
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVI---WVVVSKDMQLERIQQKIGERIGWL--------QNRS----- 238 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~---wv~vs~~~~~~~i~~~i~~~l~~~--------~~~~----- 238 (397)
.+.|-|++..|.||||.|.-+.-+.. ..-+ .++ |+.-.........+..+ .+... ...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~-~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGK-KVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 46788999999999999988877762 2222 232 33333233434444443 11110 0111
Q ss_pred --HHHHHHHHHHHhcCCcE-EEEEecCCC-----chhhhhcCCCCCCCCCCCcEEEEEcCChhh
Q 041476 239 --FEEKASGIFNLLSKMKF-LLLLDDIWE-----RIDLAKMGVPFPASSRNASKIVFTTRLVDV 294 (397)
Q Consensus 239 --~~~~~~~l~~~L~~kr~-LlVlDdv~~-----~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v 294 (397)
..+..+..++.+...+| |||||++-. .-+.+++... +.....+..||+|-|+..-
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~l-L~~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEA-LQERPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHH-HHhCCCCCEEEEECCCCCH
Confidence 11223344555555555 999999852 2223333333 4444556799999998643
No 271
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.67 E-value=0.017 Score=51.67 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------------------
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL------------------- 234 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~------------------- 234 (397)
.-+++.|.|++|+|||+|+.++..... ..=..++|++..+. +.++++.+. +++..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~~-~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQME-SVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHHH-HCCCChhHHHhCCCceEEeccccc
Confidence 457999999999999999999866541 23457888888654 355555432 23211
Q ss_pred ---cCCCHHHHHHHHHHHhcC-CcEEEEEecCC
Q 041476 235 ---QNRSFEEKASGIFNLLSK-MKFLLLLDDIW 263 (397)
Q Consensus 235 ---~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 263 (397)
...+...+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 112335566677777654 56689999975
No 272
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.66 E-value=0.0016 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999998776
No 273
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.019 Score=54.33 Aligned_cols=90 Identities=23% Similarity=0.341 Sum_probs=56.4
Q ss_pred HHHHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------
Q 041476 164 DKVWRCLVEG--QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL------- 234 (397)
Q Consensus 164 ~~l~~~L~~~--~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~------- 234 (397)
.++-..|..+ .-+++.|-|.+|+|||||..++..+.. ..- .+.+|+-.+.. .++ +--++.++..
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~--~Qi-klRA~RL~~~~~~l~l~ 152 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEESL--QQI-KLRADRLGLPTNNLYLL 152 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCH--HHH-HHHHHHhCCCccceEEe
Confidence 3344444433 447999999999999999999999982 222 67777655443 222 2233444432
Q ss_pred cCCCHHHHHHHHHHHhcCCcEEEEEecCC
Q 041476 235 QNRSFEEKASGIFNLLSKMKFLLLLDDIW 263 (397)
Q Consensus 235 ~~~~~~~~~~~l~~~L~~kr~LlVlDdv~ 263 (397)
...+.++..+.+.+ .++-|+|+|-+.
T Consensus 153 aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 153 AETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred hhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 33444444444443 678899999985
No 274
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.66 E-value=0.0045 Score=59.32 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHHhcC--------------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVEG--------------QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+++|.++.++.+.-.+... .++.|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46789888888877665531 24678999999999999999999887
No 275
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.66 E-value=0.0096 Score=57.70 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+.+|.++|+.|+||||++..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988766
No 276
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.66 E-value=0.012 Score=57.24 Aligned_cols=86 Identities=22% Similarity=0.231 Sum_probs=49.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCc-c-----c-CCCH------H
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGW-L-----Q-NRSF------E 240 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~-~-----~-~~~~------~ 240 (397)
.-..++|+|+.|+|||||++.+.... .....+++.......++.++....+..... . + +.+. .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 34689999999999999999887654 222344554433444555554444333211 1 1 1111 1
Q ss_pred HHHHHHHHHh--cCCcEEEEEecCC
Q 041476 241 EKASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 241 ~~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
...-.+.+++ +++..||++||+-
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchH
Confidence 1122234444 4789999999984
No 277
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.65 E-value=0.01 Score=53.77 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcc-CCCCCCeEEEEEeCCcC-CHHHHHHHHHHhhCcc--------cCCC-HH--
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLH-TPNYFDIVIWVVVSKDM-QLERIQQKIGERIGWL--------QNRS-FE-- 240 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~-~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~-~~-- 240 (397)
.-.-++|.|..|+|||+|+..+.+...- .+.+-+.++++-+++.. ...++.+++...-... .+.+ ..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4467899999999999999998877510 12345788888887764 5677777776643221 1111 11
Q ss_pred ---HHHHHHHHHhc---CCcEEEEEecCCC
Q 041476 241 ---EKASGIFNLLS---KMKFLLLLDDIWE 264 (397)
Q Consensus 241 ---~~~~~l~~~L~---~kr~LlVlDdv~~ 264 (397)
...-.+.++++ +++.|+++||+-.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 11223455553 6899999999953
No 278
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.026 Score=56.58 Aligned_cols=174 Identities=15% Similarity=0.141 Sum_probs=89.4
Q ss_pred CccccchhhH---HHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTF---DKVWRCLVEG---------QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~---~~l~~~L~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
.++.|.++.+ .++++.|.++ =++-+.++|++|.|||.||+.+.... .+ ..| +.|...
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V-PFf------~iSGS~--- 218 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV-PFF------SISGSD--- 218 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC-Cce------eccchh---
Confidence 4567877554 5556666653 24578899999999999999999987 32 222 222110
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc------------hh----hhhcCCCCCC-CCCCCcE
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER------------ID----LAKMGVPFPA-SSRNASK 284 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------------~~----~~~l~~~l~~-~~~~gs~ 284 (397)
..+.+- ........+...+..+.-+|++++|.++.. .. ++++..-.=. ..+.|-.
T Consensus 219 -----FVemfV---GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvi 290 (596)
T COG0465 219 -----FVEMFV---GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVI 290 (596)
T ss_pred -----hhhhhc---CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceE
Confidence 000000 111122223334444566899999998631 11 2222211000 1223444
Q ss_pred EEEEcCChhhh-----hhhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhH
Q 041476 285 IVFTTRLVDVC-----GLMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLA 350 (397)
Q Consensus 285 IlvTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 350 (397)
|+..|..++|. +.-.-+..+.++..+-..-.++++-++........-++ ..|++.+-|.--|
T Consensus 291 viaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfsGA 357 (596)
T COG0465 291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFSGA 357 (596)
T ss_pred EEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCcccc
Confidence 44444445553 11123445666665656666666655533221222222 3388888876654
No 279
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.64 E-value=0.0019 Score=57.48 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|.|.|++|+||||+|+.+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998886
No 280
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.64 E-value=0.014 Score=53.44 Aligned_cols=86 Identities=20% Similarity=0.211 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCH--HHHHHHHHHhhCcc-----cCCCHHHH-HHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQL--ERIQQKIGERIGWL-----QNRSFEEK-ASG 245 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~--~~i~~~i~~~l~~~-----~~~~~~~~-~~~ 245 (397)
+.+++.++|++|+||||++..++... . ..-..+.+++... +.. .+-+....+..+.. ...+.... ...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 46899999999999999999998877 2 2223455555432 222 23334444444432 12222222 233
Q ss_pred HHHHhcCCcEEEEEecCC
Q 041476 246 IFNLLSKMKFLLLLDDIW 263 (397)
Q Consensus 246 l~~~L~~kr~LlVlDdv~ 263 (397)
+........=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 333333444588888764
No 281
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.63 E-value=0.0018 Score=45.91 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++.|.|.+|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 282
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.63 E-value=0.012 Score=52.27 Aligned_cols=74 Identities=19% Similarity=0.131 Sum_probs=40.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHH--hhCcccCCCHHHHHHHHHHHhc
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGE--RIGWLQNRSFEEKASGIFNLLS 251 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~--~l~~~~~~~~~~~~~~l~~~L~ 251 (397)
+|+|.|++|+||||+|+.+..... ....-..+..++...-+.....+..... .-+.....+...+...+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~-~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS-RWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh-hcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHC
Confidence 589999999999999999998872 1011123444544433322322222211 1111244566666666655554
No 283
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.049 Score=48.40 Aligned_cols=191 Identities=17% Similarity=0.170 Sum_probs=100.0
Q ss_pred CcCCCCC--CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEE
Q 041476 147 VDEKPLQ--PTIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIW 211 (397)
Q Consensus 147 ~~~~~~~--~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~w 211 (397)
+++.|++ +++=|-++.++++++.+.= ..++-+..+||+|.|||-+|+..+..- ...|-..+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFLKLA- 237 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFLKLA- 237 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHHHhc-
Confidence 3444443 3466789999999888631 246678999999999999999987765 33331100
Q ss_pred EEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhc-CCcEEEEEecCCCc--------------------hhhhh
Q 041476 212 VVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLS-KMKFLLLLDDIWER--------------------IDLAK 270 (397)
Q Consensus 212 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~--------------------~~~~~ 270 (397)
. + ++.+.+ ..+...+.......-+ ..+.+|++|+++.. +-++.
T Consensus 238 ----g---P-----QLVQMf----IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ 301 (424)
T KOG0652|consen 238 ----G---P-----QLVQMF----IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 301 (424)
T ss_pred ----c---h-----HHHhhh----hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh
Confidence 0 0 011110 1122223333333333 46899999988520 01222
Q ss_pred cCCCCCCCCCCCcEEEEEcCChhhh-----hhhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcC
Q 041476 271 MGVPFPASSRNASKIVFTTRLVDVC-----GLMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECS 345 (397)
Q Consensus 271 l~~~l~~~~~~gs~IlvTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~ 345 (397)
+... ......+||..|..-.+. +.-.-+..++...-+++.--++++-+.-..+...+-.++++++.--.--|
T Consensus 302 LDGF---ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNG 378 (424)
T KOG0652|consen 302 LDGF---SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNG 378 (424)
T ss_pred hcCC---CCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCc
Confidence 2221 123356888777655552 22223456666555555555666655544443445566666543322222
Q ss_pred CchhHHHHHHHhhcC
Q 041476 346 GLPLALITTGRAMSS 360 (397)
Q Consensus 346 GlPLai~~~~~~L~~ 360 (397)
.--.|+.+=|++++-
T Consensus 379 AQcKAVcVEAGMiAL 393 (424)
T KOG0652|consen 379 AQCKAVCVEAGMIAL 393 (424)
T ss_pred hhheeeehhhhHHHH
Confidence 222344444555543
No 284
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.61 E-value=0.012 Score=54.32 Aligned_cols=79 Identities=14% Similarity=0.078 Sum_probs=43.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH--HhhCcccCCCHHHHHHHHHHHhc
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG--ERIGWLQNRSFEEKASGIFNLLS 251 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~--~~l~~~~~~~~~~~~~~l~~~L~ 251 (397)
.+.+|+|.|+.|+||||+|+.+..-.. ....-..+..++..........+.... ...+.....+...+...+.....
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~-~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk~ 139 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS-RWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLKS 139 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh-hcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHHC
Confidence 467999999999999999988766551 101111244444433332233332211 11112245566666666666655
Q ss_pred CC
Q 041476 252 KM 253 (397)
Q Consensus 252 ~k 253 (397)
++
T Consensus 140 g~ 141 (290)
T TIGR00554 140 GK 141 (290)
T ss_pred CC
Confidence 54
No 285
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.61 E-value=0.0045 Score=58.86 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=65.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHH-HHHHHHHhhCcccCCCHHHHHHHHHHHhc
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLER-IQQKIGERIGWLQNRSFEEKASGIFNLLS 251 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~-i~~~i~~~l~~~~~~~~~~~~~~l~~~L~ 251 (397)
...+.+.|.|+.|+||||+++.+.+.. .......++. +.++..... -...+..+-. ...+.......++..|+
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~~~~~~~~~i~q~e--vg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEYVHRNKRSLINQRE--VGLDTLSFANALRAALR 193 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhhhccCccceEEccc--cCCCCcCHHHHHHHhhc
Confidence 345789999999999999999988776 2334444443 222211100 0000000000 11122345566778888
Q ss_pred CCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhh
Q 041476 252 KMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVC 295 (397)
Q Consensus 252 ~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~ 295 (397)
..+=.|++|++.+.+.+...... ...|..++.|....++.
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~a----a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTA----AETGHLVFGTLHTNSAA 233 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHH----HHcCCcEEEEEcCCCHH
Confidence 89999999999876665542222 23456677777765553
No 286
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.60 E-value=0.0068 Score=51.21 Aligned_cols=116 Identities=9% Similarity=0.035 Sum_probs=59.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCC--CC---eEEEEEeCCcCCH--HHHHHHHHHhhCcccCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNY--FD---IVIWVVVSKDMQL--ERIQQKIGERIGWLQNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~--f~---~~~wv~vs~~~~~--~~i~~~i~~~l~~~~~~~~~~~~~~l 246 (397)
.-.+++|+|+.|.|||||++.+........+. ++ .+.++ .+.+.+ ..+.+.+... ....-..-+...-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~-~~~~LS~G~~~rv~l 102 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP-WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc-CCCCCCHHHHHHHHH
Confidence 44689999999999999999998875211111 11 12222 222211 1233333210 111112223333445
Q ss_pred HHHhcCCcEEEEEecCCCc---hhhhhcCCCCCCCCCCCcEEEEEcCChhhh
Q 041476 247 FNLLSKMKFLLLLDDIWER---IDLAKMGVPFPASSRNASKIVFTTRLVDVC 295 (397)
Q Consensus 247 ~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~ 295 (397)
.+.+-.++=++++|+.-+. .....+... +... +..||++|.+....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~-l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQL-LKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHH-HHHh--CCEEEEEeCChhHH
Confidence 5666677888999987542 122222222 1111 35577777776654
No 287
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.60 E-value=0.011 Score=48.73 Aligned_cols=103 Identities=20% Similarity=0.200 Sum_probs=55.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCccc-CCCHHHHHHHHHHHhcC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQ-NRSFEEKASGIFNLLSK 252 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~-~~~~~~~~~~l~~~L~~ 252 (397)
.-.+++|+|+.|.|||||++.+..... .....+|+.-.. .+..-. -..-+...-.+.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~~~~-------------~i~~~~~lS~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTWGSTV-------------KIGYFEQLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCeE-------------EEEEEccCCHHHHHHHHHHHHHhc
Confidence 346899999999999999999987651 223334432100 000000 01112223335556667
Q ss_pred CcEEEEEecCCCc---hhhhhcCCCCCCCCCCCcEEEEEcCChhhhh
Q 041476 253 MKFLLLLDDIWER---IDLAKMGVPFPASSRNASKIVFTTRLVDVCG 296 (397)
Q Consensus 253 kr~LlVlDdv~~~---~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~ 296 (397)
++-++++|+.-.. .....+... +... +..||++|...+...
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~-l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEA-LKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHH-HHHc--CCEEEEEECCHHHHH
Confidence 7789999998532 222222222 1111 245777777766543
No 288
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.59 E-value=0.0092 Score=50.92 Aligned_cols=103 Identities=14% Similarity=0.067 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE------eCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVV------VSKDMQLERIQQKIGERIGWLQNRSFEEKASGIF 247 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~------vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~ 247 (397)
.-.+++|+|+.|+|||||++.+..-.. .....+++. +.+... +. .-+...-.+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~i~~~~q~~~-----------LS-----gGq~qrv~la 83 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI----PNGDNDEWDGITPVYKPQYID-----------LS-----GGELQRVAIA 83 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC----CCCcEEEECCEEEEEEcccCC-----------CC-----HHHHHHHHHH
Confidence 446999999999999999999987651 122222221 111111 11 1122233355
Q ss_pred HHhcCCcEEEEEecCCCc---hhhhhcCCCCCCC-CCCCcEEEEEcCChhhhh
Q 041476 248 NLLSKMKFLLLLDDIWER---IDLAKMGVPFPAS-SRNASKIVFTTRLVDVCG 296 (397)
Q Consensus 248 ~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~-~~~gs~IlvTtR~~~v~~ 296 (397)
..+..++-++++|+.-+. .....+...+... ...+.-||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 566677889999998542 1112221110011 112255777777766543
No 289
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.59 E-value=0.016 Score=50.95 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHH---hc-CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCL---VE-GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L---~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.+...+.|++-- .. ....-|.+||--|.|||+|++.+.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 35799988888887653 22 345678899999999999999999998
No 290
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.58 E-value=0.0059 Score=52.80 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCC-------CeEEEEEeCCc
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYF-------DIVIWVVVSKD 217 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f-------~~~~wv~vs~~ 217 (397)
.+..|.|++|+||||++..+..........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 5888999999999999999988873222222 36788877665
No 291
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.57 E-value=0.014 Score=50.16 Aligned_cols=45 Identities=24% Similarity=0.180 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHH
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQK 226 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~ 226 (397)
++.|.|++|+|||+|+.++..... ..=..++|++.... ..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC--HHHHHHH
Confidence 367999999999999999877762 22245778776543 4444444
No 292
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0074 Score=51.32 Aligned_cols=26 Identities=42% Similarity=0.530 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 293
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.0074 Score=52.61 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++-+|+|.|.+|+||||+|+.+++.+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999998
No 294
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.57 E-value=0.0022 Score=56.44 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+..+|+|.|++|+|||||++.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 295
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.029 Score=52.70 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+-|.++||+|.|||-||+.|+...
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 46789999999999999999999987
No 296
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.56 E-value=0.0079 Score=53.54 Aligned_cols=83 Identities=23% Similarity=0.299 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCC-CCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----------------c
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNY-FDIVIWVVVSKDMQLERIQQKIGERIGWL-----------------Q 235 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~-f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------------~ 235 (397)
.-+++.|.|++|+|||+|+.++..... .. =..++|++...++ .++.+.+. +++.. .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 457999999999999999988665441 22 3457788775543 45544433 33221 1
Q ss_pred -----CCCHHHHHHHHHHHhcC-CcEEEEEecC
Q 041476 236 -----NRSFEEKASGIFNLLSK-MKFLLLLDDI 262 (397)
Q Consensus 236 -----~~~~~~~~~~l~~~L~~-kr~LlVlDdv 262 (397)
..+...+...+.+.++. +...+|+|.+
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34677778888887765 5679999987
No 297
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.55 E-value=0.016 Score=52.71 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK 216 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 216 (397)
.-+++.|.|++|+|||+++.++..... ..-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 457899999999999999999866641 2234678888764
No 298
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.018 Score=55.40 Aligned_cols=88 Identities=23% Similarity=0.221 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCC-CCCCeEEEEEeCCc-CCHHHHHHHHHHhhCcc--cCCCHHHHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTP-NYFDIVIWVVVSKD-MQLERIQQKIGERIGWL--QNRSFEEKASGIFNL 249 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~-~~~~~i~~~i~~~l~~~--~~~~~~~~~~~l~~~ 249 (397)
..+++.++|+.|+||||.+..++....... .+-..+..+++... .....-++..++.++.+ ...+...+...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 357999999999999999999988762111 12234555554431 12233366666666654 233444444444432
Q ss_pred hcCCcEEEEEecCC
Q 041476 250 LSKMKFLLLLDDIW 263 (397)
Q Consensus 250 L~~kr~LlVlDdv~ 263 (397)
.+.=+|++|...
T Consensus 253 --~~~DlVLIDTaG 264 (388)
T PRK12723 253 --KDFDLVLVDTIG 264 (388)
T ss_pred --CCCCEEEEcCCC
Confidence 344588899884
No 299
>PRK14527 adenylate kinase; Provisional
Probab=96.55 E-value=0.0031 Score=54.59 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+..+|.|+|++|+||||+|+.+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 300
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.51 E-value=0.0024 Score=54.94 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.++|.|.|++|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 301
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.51 E-value=0.01 Score=57.99 Aligned_cols=88 Identities=24% Similarity=0.272 Sum_probs=59.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHHhhCcc-------c-CCCH-----
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGERIGWL-------Q-NRSF----- 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~-~~~~----- 239 (397)
.-.-++|.|.+|+|||||+.++..... +.+-+.++++-+++.. ...+++.++...-... + +.+.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 446899999999999999999988872 2366788888777654 5666777766542221 1 1111
Q ss_pred -HHHHHHHHHHh---cCCcEEEEEecCC
Q 041476 240 -EEKASGIFNLL---SKMKFLLLLDDIW 263 (397)
Q Consensus 240 -~~~~~~l~~~L---~~kr~LlVlDdv~ 263 (397)
...+-.+.+++ +++..||++|++-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 11223345555 3789999999994
No 302
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.50 E-value=0.0065 Score=58.92 Aligned_cols=46 Identities=26% Similarity=0.282 Sum_probs=35.8
Q ss_pred CccccchhhHHHHHHHHhc-------C---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVE-------G---------QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------~---------~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.+..++.+...+.+ . ..+.+.++|++|+|||+||+.++...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999888877655421 0 23568999999999999999998775
No 303
>PRK05439 pantothenate kinase; Provisional
Probab=96.50 E-value=0.018 Score=53.45 Aligned_cols=81 Identities=16% Similarity=0.077 Sum_probs=45.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHH--HHHhhCcccCCCHHHHHHHHHHHh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQK--IGERIGWLQNRSFEEKASGIFNLL 250 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~--i~~~l~~~~~~~~~~~~~~l~~~L 250 (397)
...-+|+|.|.+|+||||+|+.+.... ........+.-++...-+.....+.. +...-+.+..-|...+...|....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l-~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk 162 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL-SRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVK 162 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-HhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHH
Confidence 356699999999999999999998865 11111123344444433333322221 111112224556666777777666
Q ss_pred cCCc
Q 041476 251 SKMK 254 (397)
Q Consensus 251 ~~kr 254 (397)
.++.
T Consensus 163 ~G~~ 166 (311)
T PRK05439 163 SGKP 166 (311)
T ss_pred cCCC
Confidence 6654
No 304
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.49 E-value=0.015 Score=49.09 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=33.1
Q ss_pred cccchhhHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 156 IVGLESTFDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 156 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++|.+..+.++.+.+.. .....|.|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 46778888888877654 334667799999999999999999975
No 305
>PTZ00301 uridine kinase; Provisional
Probab=96.48 E-value=0.0027 Score=55.74 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|+|.|++|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999988775
No 306
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.48 E-value=0.013 Score=56.71 Aligned_cols=85 Identities=24% Similarity=0.324 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHHhhCcc-------c-CCCHH----
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGERIGWL-------Q-NRSFE---- 240 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~-~~~~~---- 240 (397)
.-..++|+|..|+|||||++.+.... ..+.++..-+++.. ...++.++++..-... + +.+..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 44689999999999999999998654 22566666676654 4456666655442221 1 11111
Q ss_pred --HHHHHHHHHh--cCCcEEEEEecCC
Q 041476 241 --EKASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 241 --~~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
..+-.+.+++ +++..||++||+-
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 1122244555 5789999999984
No 307
>PRK04328 hypothetical protein; Provisional
Probab=96.47 E-value=0.029 Score=50.77 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=31.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD 217 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 217 (397)
.-+++.|.|++|+|||+|+.++.... ...-...+|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 45799999999999999999976654 123456788887654
No 308
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.47 E-value=0.02 Score=55.86 Aligned_cols=88 Identities=22% Similarity=0.283 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHHhhCcc--------cCCCHH----
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGERIGWL--------QNRSFE---- 240 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~---- 240 (397)
.-.-++|.|.+|+|||||+..+..... .++-+.++++-+++.. .+.++++++...-... ...+..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446789999999999999999877762 1223567777776654 5667777776542221 111111
Q ss_pred --HHHHHHHHHh---cCCcEEEEEecCC
Q 041476 241 --EKASGIFNLL---SKMKFLLLLDDIW 263 (397)
Q Consensus 241 --~~~~~l~~~L---~~kr~LlVlDdv~ 263 (397)
...-.+.+++ ++++.||++|++-
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 1223355666 6789999999984
No 309
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.47 E-value=0.0065 Score=51.68 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|.|||||.+.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998765
No 310
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.46 E-value=0.003 Score=55.72 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINN 197 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~ 197 (397)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 311
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.0056 Score=51.12 Aligned_cols=116 Identities=22% Similarity=0.207 Sum_probs=61.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC--CHHHHHHHHHHhhCcc-cCCCHHHHHHHHHHHh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM--QLERIQQKIGERIGWL-QNRSFEEKASGIFNLL 250 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~i~~~i~~~l~~~-~~~~~~~~~~~l~~~L 250 (397)
+-.+++|+|+.|.|||||++.+.... ......+++...... ..... ...+... +-..-+...-.+...+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~qlS~G~~~r~~l~~~l 95 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEEL----RRRIGYVPQLSGGQRQRVALARAL 95 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHHH----HhceEEEeeCCHHHHHHHHHHHHH
Confidence 34689999999999999999998765 234455555322111 11111 1111110 1111222333455566
Q ss_pred cCCcEEEEEecCCCc---hhhhhcCCCCCCCCCCCcEEEEEcCChhhhhh
Q 041476 251 SKMKFLLLLDDIWER---IDLAKMGVPFPASSRNASKIVFTTRLVDVCGL 297 (397)
Q Consensus 251 ~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~ 297 (397)
...+-++++|+.-.. .....+...+......+..+|++|.+......
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 667889999998642 22222211101011124668888887776544
No 312
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.44 E-value=0.0061 Score=62.21 Aligned_cols=75 Identities=11% Similarity=0.133 Sum_probs=56.9
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCc
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGW 233 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (397)
+.++|.++.++.|...+... +.+.++|++|+||||+|+.+.+... ..+++..+|..-+ ..+...+++.+..+++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np-~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNP-EDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCC-CcchHHHHHHHHHhcCH
Confidence 45799998888888877654 4788999999999999999998762 3456778887653 33667777777766554
No 313
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.44 E-value=0.0037 Score=51.80 Aligned_cols=36 Identities=28% Similarity=0.183 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVV 213 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 213 (397)
..+|.|+|.+|+||||||+.+.... ...-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 3689999999999999999999998 23334455554
No 314
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.44 E-value=0.059 Score=49.41 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=27.3
Q ss_pred HHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 168 RCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 168 ~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++.+.+..++.|.|.+|+|||||+..+.+..
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444578899999999999999999999986
No 315
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.43 E-value=0.044 Score=48.81 Aligned_cols=41 Identities=27% Similarity=0.245 Sum_probs=30.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD 217 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 217 (397)
.-.++.|.|++|+|||||+.++..... ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 457999999999999999998776541 22346788876443
No 316
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.026 Score=53.65 Aligned_cols=87 Identities=20% Similarity=0.159 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-CCHHHHHHHHHHhhCcc--cCCCHHHHHHHHHHHh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD-MQLERIQQKIGERIGWL--QNRSFEEKASGIFNLL 250 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~i~~~i~~~l~~~--~~~~~~~~~~~l~~~L 250 (397)
+.+++.|+|+.|+||||++..++... ... -..+.+++.... ....+-++..++.++.+ ...+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 45799999999999999999998776 222 234566665432 23345566666666654 3345555544444332
Q ss_pred c-CCcEEEEEecCC
Q 041476 251 S-KMKFLLLLDDIW 263 (397)
Q Consensus 251 ~-~kr~LlVlDdv~ 263 (397)
. +..=+|++|-.-
T Consensus 282 ~~~~~D~VLIDTAG 295 (407)
T PRK12726 282 YVNCVDHILIDTVG 295 (407)
T ss_pred hcCCCCEEEEECCC
Confidence 1 334578888774
No 317
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.41 E-value=0.0085 Score=57.52 Aligned_cols=46 Identities=24% Similarity=0.218 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHHHhcC--------------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVEG--------------QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.+..+..+..++... ..+.+.++|++|+|||+||+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999988888777431 14678999999999999999998886
No 318
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.41 E-value=0.014 Score=60.95 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=36.9
Q ss_pred ccccchhhHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 155 TIVGLESTFDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|+...+..+.+.+.. .....|.|+|..|+|||++|+.+++..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 589999888888776643 344578899999999999999998875
No 319
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.40 E-value=0.0071 Score=55.24 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.|.|+|.+|+||||+|+++....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999987
No 320
>PRK03839 putative kinase; Provisional
Probab=96.40 E-value=0.0029 Score=54.22 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|.|.|++|+||||+++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 321
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.39 E-value=0.0032 Score=55.32 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|+|+|++|+|||||++.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 322
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.38 E-value=0.0098 Score=57.85 Aligned_cols=88 Identities=25% Similarity=0.335 Sum_probs=58.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHHhhCcc--------cCCCH-----
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGERIGWL--------QNRSF----- 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~----- 239 (397)
.-.-++|.|.+|+|||+|+.++.... . +.+-+.++++-+++.. ...++++++...-... .+.+.
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 44678999999999999999988876 2 2345788888887654 4566777766542211 11111
Q ss_pred -HHHHHHHHHHhc---CCcEEEEEecCC
Q 041476 240 -EEKASGIFNLLS---KMKFLLLLDDIW 263 (397)
Q Consensus 240 -~~~~~~l~~~L~---~kr~LlVlDdv~ 263 (397)
...+-.+.++++ +++.||++||+-
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChH
Confidence 112234556654 589999999984
No 323
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.37 E-value=0.0035 Score=49.81 Aligned_cols=27 Identities=37% Similarity=0.488 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccCCCCCC
Q 041476 178 IGLYGMGGVGKTTLLAQINNKFLHTPNYFD 207 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~~~~~~f~ 207 (397)
|.|+|.+|+||||+|+.++... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 6799999999999999999987 55664
No 324
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.36 E-value=0.0056 Score=52.62 Aligned_cols=36 Identities=33% Similarity=0.438 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVV 213 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 213 (397)
.+++.|+|+.|+|||||++.+.... ...|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999987 57776555544
No 325
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.36 E-value=0.0068 Score=55.32 Aligned_cols=126 Identities=20% Similarity=0.174 Sum_probs=69.5
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccC
Q 041476 157 VGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQN 236 (397)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 236 (397)
.|...+..+.+..+.....+++.|.|+.|+||||++..+.+... ..-..++.+.-+..+....+ .++... .
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~~-----~q~~v~-~ 132 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPGI-----NQVQVN-E 132 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCCc-----eEEEeC-C
Confidence 45544444444444445567899999999999999998877651 11112333221111111110 111111 1
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhh
Q 041476 237 RSFEEKASGIFNLLSKMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVC 295 (397)
Q Consensus 237 ~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~ 295 (397)
.........++..|+..+=.|+++++.+.+....+... ...|..++.|....++.
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a----a~tGh~v~tTlHa~~~~ 187 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA----ALTGHLVLSTLHTNDAP 187 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH----HHcCCcEEEEeccCCHH
Confidence 11123556677788888899999999887654433222 12344566666665543
No 326
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.36 E-value=0.0026 Score=49.43 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|.|+|++|+|||+||+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988877
No 327
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.35 E-value=0.035 Score=54.64 Aligned_cols=81 Identities=23% Similarity=0.315 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
.-.++.|.|.+|+|||||+.++..... ..-..++|++.... ..++... ++.++.. ...+.+++.+.+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 346999999999999999999988762 22345778776543 3343332 3444432 223444443333
Q ss_pred HHHhcCCcEEEEEecCC
Q 041476 247 FNLLSKMKFLLLLDDIW 263 (397)
Q Consensus 247 ~~~L~~kr~LlVlDdv~ 263 (397)
. +.+.-+||+|.+.
T Consensus 153 ~---~~~~~lVVIDSIq 166 (446)
T PRK11823 153 E---EEKPDLVVIDSIQ 166 (446)
T ss_pred H---hhCCCEEEEechh
Confidence 2 2356699999985
No 328
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.022 Score=59.62 Aligned_cols=100 Identities=16% Similarity=0.232 Sum_probs=63.5
Q ss_pred ccccchhhHHHHHHHHhc------C--CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHH
Q 041476 155 TIVGLESTFDKVWRCLVE------G--QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQK 226 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------~--~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~ 226 (397)
.++|.++.+..|.+.+.. + ....+.+.|+.|+|||-||+.++.-. -+..+..+-++.+. ..+
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhh------hhh-
Confidence 356777777777766643 1 34567889999999999999998887 34444444443332 222
Q ss_pred HHHhhCcccCCCHHHHHHHHHHHhcCCcE-EEEEecCCC
Q 041476 227 IGERIGWLQNRSFEEKASGIFNLLSKMKF-LLLLDDIWE 264 (397)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~ 264 (397)
+.+-++.++.---.+...+|.+.++.++| +|+||||+.
T Consensus 633 vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 633 VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhh
Confidence 33333433222223344578888888887 777999974
No 329
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.33 E-value=0.015 Score=56.52 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-..++|+|++|+||||||+.+.--.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccc
Confidence 34689999999999999999986543
No 330
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.33 E-value=0.13 Score=47.99 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHH
Q 041476 160 ESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQ 224 (397)
Q Consensus 160 ~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~ 224 (397)
......++.++..+ +.|.|.|++|+||||+|+.++... ... .+.|.++...+..+++
T Consensus 51 ~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l---~~~---~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 51 KATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL---NWP---CVRVNLDSHVSRIDLV 107 (327)
T ss_pred HHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH---CCC---eEEEEecCCCChhhcC
Confidence 33455666776543 568999999999999999999987 222 2345555554444433
No 331
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.33 E-value=0.13 Score=48.09 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=36.0
Q ss_pred eeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHH
Q 041476 303 TFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLAL 351 (397)
Q Consensus 303 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 351 (397)
++++.+++.+|+..++.......-.......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887755442222344556777787889999543
No 332
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.32 E-value=0.0042 Score=55.69 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=22.2
Q ss_pred EEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 041476 180 LYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVV 214 (397)
Q Consensus 180 I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 214 (397)
|+||+|+||||+++.+.+.. . ..-..++-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~-~--~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL-E--SNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH-T--TT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHH-H--hccCCceEEEc
Confidence 68999999999999999988 2 23233455553
No 333
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.32 E-value=0.023 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998876
No 334
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.32 E-value=0.022 Score=55.34 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=52.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHHhhCcc-------c-CCCH-----
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGERIGWL-------Q-NRSF----- 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~-~~~~----- 239 (397)
+-..++|+|..|+|||||++.+.... ..+..+++-+++.. ...++..+.+..-+.. + +.+.
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 45689999999999999999998765 12455566666554 4445555444332221 1 1111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEecCC
Q 041476 240 -EEKASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
...+-.+.+++ +++..||++||+-
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 11122344555 4789999999994
No 335
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.19 Score=51.07 Aligned_cols=152 Identities=19% Similarity=0.150 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcE
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKF 255 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~ 255 (397)
.-|.++|++|+|||.||..+..... .-+++|-.+ +++..- ++ .+.+...+-..+.-.-|+|
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~--------~~fisvKGP----ElL~Ky---IG----aSEq~vR~lF~rA~~a~PC 762 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSN--------LRFISVKGP----ELLSKY---IG----ASEQNVRDLFERAQSAKPC 762 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCC--------eeEEEecCH----HHHHHH---hc----ccHHHHHHHHHHhhccCCe
Confidence 4688999999999999999987751 224555433 222221 11 1223333333333456999
Q ss_pred EEEEecCCCc-------------hhhhhcCCCCC-CCCCCCcEEE-EEcCChhhhh-hhc---cCceeecCCCChHhHHH
Q 041476 256 LLLLDDIWER-------------IDLAKMGVPFP-ASSRNASKIV-FTTRLVDVCG-LME---AQKTFKVECLADQDAWE 316 (397)
Q Consensus 256 LlVlDdv~~~-------------~~~~~l~~~l~-~~~~~gs~Il-vTtR~~~v~~-~~~---~~~~~~l~~L~~~~~~~ 316 (397)
+|.+|++++. ...+.+...+- ..+-.|.-|+ .|||..-+-. .+. -+..+.-..-++.+-.+
T Consensus 763 iLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~ 842 (952)
T KOG0735|consen 763 ILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLE 842 (952)
T ss_pred EEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHH
Confidence 9999999751 12233322200 1223455555 4666544321 112 23445555667778888
Q ss_pred HHHHHhCCccCCCCCChHHHHHHHHHHcCCchhH
Q 041476 317 LFQKKVGEETLESHPDIPELAQTVANECSGLPLA 350 (397)
Q Consensus 317 Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 350 (397)
+|+.....-....+ ...+.++.+..|..=|
T Consensus 843 il~~ls~s~~~~~~----vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 843 ILQVLSNSLLKDTD----VDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHhhccCCccc----cchHHHhhhcCCCchh
Confidence 88776542221111 2246677788876543
No 336
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.015 Score=56.06 Aligned_cols=25 Identities=32% Similarity=0.483 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++.++|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 337
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.30 E-value=0.041 Score=54.22 Aligned_cols=81 Identities=23% Similarity=0.314 Sum_probs=49.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
.-.++.|.|.+|+|||||+.++..... ..-..++|++.... ..++... ++.++.. ...+.+.+...+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i 166 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSETNWEQICANI 166 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHH
Confidence 457999999999999999999987762 11235778776543 3333322 2233322 233444333333
Q ss_pred HHHhcCCcEEEEEecCC
Q 041476 247 FNLLSKMKFLLLLDDIW 263 (397)
Q Consensus 247 ~~~L~~kr~LlVlDdv~ 263 (397)
. +.+.-++|+|.+.
T Consensus 167 ~---~~~~~~vVIDSIq 180 (454)
T TIGR00416 167 E---EENPQACVIDSIQ 180 (454)
T ss_pred H---hcCCcEEEEecch
Confidence 2 2356689999885
No 338
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.28 E-value=0.033 Score=55.55 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=59.8
Q ss_pred HHHHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------
Q 041476 164 DKVWRCLVEG--QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL------- 234 (397)
Q Consensus 164 ~~l~~~L~~~--~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~------- 234 (397)
..+-+.|..+ .-+++.|.|++|+|||||+.++..... ..-..+++++..+. ..++...+ +.++..
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhC
Confidence 3344444432 457999999999999999999988762 22345666665443 45555553 333321
Q ss_pred ----------cCCCHHHHHHHHHHHhcC-CcEEEEEecCC
Q 041476 235 ----------QNRSFEEKASGIFNLLSK-MKFLLLLDDIW 263 (397)
Q Consensus 235 ----------~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 263 (397)
.....++....+.+.+.. +.-.+|+|.+.
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 122346667777777754 55689999985
No 339
>PRK06217 hypothetical protein; Validated
Probab=96.27 E-value=0.0078 Score=51.72 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|.|.|.+|+||||+|+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999886
No 340
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.018 Score=49.36 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.|.+.|++|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 567889999999999999998877
No 341
>PRK04040 adenylate kinase; Provisional
Probab=96.27 E-value=0.0041 Score=53.69 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|+|++|+||||+++.+.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999887
No 342
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.26 E-value=0.0088 Score=48.20 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 161 STFDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 161 ~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++..++-+.|.. ....+|.+.|.-|+||||+++.+....
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344455555443 244699999999999999999999987
No 343
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.26 E-value=0.0043 Score=52.56 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+...|.|+|++|+||||+|+.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999986
No 344
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.26 E-value=0.0011 Score=57.24 Aligned_cols=21 Identities=29% Similarity=0.331 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041476 177 IIGLYGMGGVGKTTLLAQINN 197 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~ 197 (397)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999883
No 345
>PRK05973 replicative DNA helicase; Provisional
Probab=96.25 E-value=0.038 Score=49.32 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=33.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKI 227 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i 227 (397)
.-.++.|.|.+|+|||+++.++..... ..-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHH
Confidence 346889999999999999999877652 22345667766544 34554444
No 346
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.24 E-value=0.016 Score=59.29 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=50.7
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCc
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGW 233 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (397)
+.++|.++.+..+...+... +.+.++|++|+||||+++.+.+... ...|...+++.-+ ..+...++..+..+++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNP-EDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence 46789998888877777654 3556999999999999999998872 2344444433322 22445556666665543
No 347
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.051 Score=47.55 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCchhhhhcCCC---CCCCCCCCcEEEEEcCChhhhhhhccCcee
Q 041476 242 KASGIFNLLSKMKFLLLLDDIWERIDLAKMGVP---FPASSRNASKIVFTTRLVDVCGLMEAQKTF 304 (397)
Q Consensus 242 ~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~---l~~~~~~gs~IlvTtR~~~v~~~~~~~~~~ 304 (397)
....+.+.+--++-|.|||+.++--+.+.+... +-.-...|+-+++.|..+.++....++.++
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 334445555556789999999875444443211 000112366677778888888777655544
No 348
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0078 Score=48.74 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=41.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCc
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMK 254 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr 254 (397)
.+-|.|.|-+|+|||||+..++... . .-|+++|.-..-..+...-=+.... ...|.+.+.+.|...+.+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y~c-~i~DEdkv~D~Le~~m~~Gg 77 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEYKC-HILDEDKVLDELEPLMIEGG 77 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhcccccccC-ccccHHHHHHHHHHHHhcCC
Confidence 3568899999999999999998664 1 2355655432222222111111111 34466667777777665543
No 349
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.22 E-value=0.016 Score=52.66 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhhhccCCCCCCeE-EEEEeCCcC-CHHHHHHHHHHhhCcc-------c-CCCHHH-
Q 041476 174 QFGIIGLYGMGGVGKTTLL-AQINNKFLHTPNYFDIV-IWVVVSKDM-QLERIQQKIGERIGWL-------Q-NRSFEE- 241 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa-~~v~~~~~~~~~~f~~~-~wv~vs~~~-~~~~i~~~i~~~l~~~-------~-~~~~~~- 241 (397)
+-.-++|.|.+|+|||+|| ..+.+.. .-+.+ +++-+.+.. ...++.+++...-... + ..+...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4467899999999999996 5555542 23333 666666653 5667777776542211 1 111111
Q ss_pred -----HHHHHHHHh--cCCcEEEEEecCCCc-hhhhhc
Q 041476 242 -----KASGIFNLL--SKMKFLLLLDDIWER-IDLAKM 271 (397)
Q Consensus 242 -----~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l 271 (397)
..-.+.+++ +++..||++||+-.. ..+.++
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 112233333 478999999999542 334444
No 350
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.22 E-value=0.024 Score=54.99 Aligned_cols=86 Identities=21% Similarity=0.266 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cC-C-CHHH---
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QN-R-SFEE--- 241 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~-~-~~~~--- 241 (397)
.-..++|+|..|+|||||++.+.... . ....++...-...-.+.++..+.+..-... +. . ....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~---~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT---D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 44689999999999999999888765 1 122333222233444555666544432221 11 1 1111
Q ss_pred --HHHHHHHHh--cCCcEEEEEecCC
Q 041476 242 --KASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 242 --~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
.+-.+.+++ +++..||++||+-
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 122344555 4789999999984
No 351
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.22 E-value=0.02 Score=55.92 Aligned_cols=85 Identities=21% Similarity=0.186 Sum_probs=47.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHHhhCcc--cCCCHHHHHHHHHHHhc
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGERIGWL--QNRSFEEKASGIFNLLS 251 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--~~~~~~~~~~~l~~~L~ 251 (397)
.+++.++|++|+||||++..++... .....-..+..|+....- ...+-+....+.++.+ ...+..++...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 3689999999999999999887776 201222355666543211 1122333334444433 22333444444443 22
Q ss_pred CCcEEEEEecC
Q 041476 252 KMKFLLLLDDI 262 (397)
Q Consensus 252 ~kr~LlVlDdv 262 (397)
..=+|++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3458889976
No 352
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.21 E-value=0.012 Score=56.55 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=31.6
Q ss_pred hHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 162 TFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+.+++.+.......+.|.|+||+|||+|.+.+.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34556666666677899999999999999999999987
No 353
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.21 E-value=0.026 Score=49.74 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|.|||||++.+....
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998764
No 354
>PRK05922 type III secretion system ATPase; Validated
Probab=96.21 E-value=0.02 Score=55.51 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHHhhCcc------cCCC--H-----
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGERIGWL------QNRS--F----- 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~~l~~~------~~~~--~----- 239 (397)
.-..++|+|+.|+|||||.+.+.... ..+...++.++. .....+.+.+........ ...+ .
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 44679999999999999999998764 123333333433 334455555554443322 1111 1
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEecCC
Q 041476 240 -EEKASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
...+-.+.+++ ++++.||++||+-
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 11222344555 4789999999994
No 355
>PF13245 AAA_19: Part of AAA domain
Probab=96.20 E-value=0.015 Score=42.05 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=18.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45778889999999995554444333
No 356
>PRK08149 ATP synthase SpaL; Validated
Probab=96.20 E-value=0.023 Score=55.07 Aligned_cols=85 Identities=13% Similarity=0.205 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-CCHHHHHHHHHHhhCcc--------cCCCH-----
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD-MQLERIQQKIGERIGWL--------QNRSF----- 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~i~~~i~~~l~~~--------~~~~~----- 239 (397)
+-..++|+|.+|+|||||++.++... ..+.++...+... .++.++..+........ .+.+.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 45689999999999999999998764 2233344444433 35566666666543321 11111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEecCC
Q 041476 240 -EEKASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
...+-.+.+++ ++|+.||++||+-
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchH
Confidence 11223344444 4799999999994
No 357
>PRK00625 shikimate kinase; Provisional
Probab=96.20 E-value=0.0041 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|.|+|++|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998886
No 358
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.18 E-value=0.0061 Score=57.58 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=40.7
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.+||.++.+..|+..+.+...+-+.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999888888888888899999999999999997765
No 359
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.18 E-value=0.011 Score=52.84 Aligned_cols=62 Identities=21% Similarity=0.245 Sum_probs=37.3
Q ss_pred hHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHH
Q 041476 162 TFDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQ 224 (397)
Q Consensus 162 ~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~ 224 (397)
+...+++.+.. ++..+|+|+|++|+|||||...+...+ ...++=-.++=|.-|.+++=-.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCccc
Confidence 34455555544 467899999999999999999998888 323333345555555555533333
No 360
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.042 Score=53.25 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+++++|+.|+||||++..+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999887754
No 361
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.17 E-value=0.0038 Score=54.37 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 362
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.16 E-value=0.028 Score=50.58 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=67.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCC----------------CCeEEEEEeC----------------Cc----
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNY----------------FDIVIWVVVS----------------KD---- 217 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~----------------f~~~~wv~vs----------------~~---- 217 (397)
.-.+++|.|+.|+|||||.+.++.-.....+. -....+|.-+ ..
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 44799999999999999999998754110000 0012222211 00
Q ss_pred ----CC--HHHHHHHHHHhhCcc-------cC-CCHHHHHHHHHHHhcCCcEEEEEecCCCchh-------hhhcCCCCC
Q 041476 218 ----MQ--LERIQQKIGERIGWL-------QN-RSFEEKASGIFNLLSKMKFLLLLDDIWERID-------LAKMGVPFP 276 (397)
Q Consensus 218 ----~~--~~~i~~~i~~~l~~~-------~~-~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-------~~~l~~~l~ 276 (397)
++ -.++....++.++.. .. ..-+...-.+...|..+.=+|+||+--+.-+ ++-+...
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l-- 184 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL-- 184 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHH--
Confidence 11 122344445555443 12 2223334456777888888999998754211 1222111
Q ss_pred CCCCCCcEEEEEcCChhhhhhh
Q 041476 277 ASSRNASKIVFTTRLVDVCGLM 298 (397)
Q Consensus 277 ~~~~~gs~IlvTtR~~~v~~~~ 298 (397)
....|.-||+++.+.+.|..+
T Consensus 185 -~~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 185 -NREKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred -HHhcCCEEEEEecCHHHHHHh
Confidence 223467799999999887654
No 363
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.16 E-value=0.022 Score=55.53 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHHhhCcc--------cCCCH-H---
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGERIGWL--------QNRSF-E--- 240 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~-~--- 240 (397)
.-.-++|.|.+|+|||||+.++..... .++-..++++-+++.. ...++++++...-... ...+. .
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 456789999999999999999887762 2333577778776654 5667777775432211 11111 1
Q ss_pred --HHHHHHHHHh---cCCcEEEEEecCC
Q 041476 241 --EKASGIFNLL---SKMKFLLLLDDIW 263 (397)
Q Consensus 241 --~~~~~l~~~L---~~kr~LlVlDdv~ 263 (397)
..+-.+.+++ ++++.||++||+-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchh
Confidence 1223455666 4689999999994
No 364
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.018 Score=51.19 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=33.1
Q ss_pred ccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 157 VGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 157 vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
=|=.+.+++|.+...- +.++-|.++|++|.|||-+|+.|+|+-
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 3456667776665431 356788999999999999999999986
No 365
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.15 E-value=0.017 Score=55.81 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=36.4
Q ss_pred CCccccchhhHHHHHHHHh-------c---C--------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 153 QPTIVGLESTFDKVWRCLV-------E---G--------QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~-------~---~--------~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...++|.++.++.+...+. . . ..+.+.++|++|+|||+||+.++...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 4567999988888866551 1 1 12579999999999999999999776
No 366
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.15 E-value=0.021 Score=49.51 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|.|+.|.|||||.+.+..-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998754
No 367
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.15 E-value=0.01 Score=53.84 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=44.0
Q ss_pred HHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHH
Q 041476 164 DKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQK 226 (397)
Q Consensus 164 ~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~ 226 (397)
.+|+..+.. ++..+|+|+|.||+|||||.-.+...+ ...++=-.++=|.-|.+++--.|+-+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccccc
Confidence 445555543 577899999999999999999998888 44455555666666776665444443
No 368
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.15 E-value=0.057 Score=48.22 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=32.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKI 227 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i 227 (397)
...++.|.|++|+|||||+.++.....+ ++ ..+++++.. .+..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g--~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ-NG--YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-CC--CcEEEEeCC--CCHHHHHHHH
Confidence 3469999999999999998766655411 12 345666633 3446666665
No 369
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.14 E-value=0.0081 Score=49.11 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK 216 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 216 (397)
++|.|+|+.|+|||||++.+.+... ...+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4799999999999999999999983 24455555566554
No 370
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.13 E-value=0.0048 Score=52.73 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++.|+|++|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 371
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.12 E-value=0.016 Score=54.80 Aligned_cols=65 Identities=23% Similarity=0.299 Sum_probs=48.8
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 041476 155 TIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKI 227 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i 227 (397)
.++|.+..+..+...+..+ +.+.+.|++|+|||+||+.++... . ....+|.+.......++.-..
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHhcCch
Confidence 4789888888877776644 577899999999999999999987 2 334566677776666655443
No 372
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.12 E-value=0.0055 Score=52.25 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 373
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.11 E-value=0.029 Score=48.11 Aligned_cols=117 Identities=16% Similarity=0.103 Sum_probs=63.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe---CCcCCHHHHHHHHH--Hh--hCcc---cCCCH----
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVV---SKDMQLERIQQKIG--ER--IGWL---QNRSF---- 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~v---s~~~~~~~i~~~i~--~~--l~~~---~~~~~---- 239 (397)
....|.|+|..|-||||.|.-+.-+.. .+=..+..+.. .........++.+. .- .+.. ...+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~---g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV---GHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH---HCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHH
Confidence 447899999999999999988877762 22222333332 21233344444321 00 0000 00111
Q ss_pred ---HHHHHHHHHHhcCCcE-EEEEecCCC-----chhhhhcCCCCCCCCCCCcEEEEEcCChhh
Q 041476 240 ---EEKASGIFNLLSKMKF-LLLLDDIWE-----RIDLAKMGVPFPASSRNASKIVFTTRLVDV 294 (397)
Q Consensus 240 ---~~~~~~l~~~L~~kr~-LlVlDdv~~-----~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v 294 (397)
....+..++.+.+.+| |||||++-. ....+++... +.....+..||+|-|+..-
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~-L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEA-LNARPGMQHVVITGRGAPR 160 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHH-HHcCCCCCEEEEECCCCCH
Confidence 1123344555555555 999999853 2233334333 3444556799999998643
No 374
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.11 E-value=0.039 Score=51.66 Aligned_cols=85 Identities=22% Similarity=0.301 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC-CcCCHHHHHHHHHHhhCcc--------cCCCH-----
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVS-KDMQLERIQQKIGERIGWL--------QNRSF----- 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs-~~~~~~~i~~~i~~~l~~~--------~~~~~----- 239 (397)
.-..++|+|..|+|||||.+.+.... . .+..+...+. ...++.++.......-... ...+.
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 44688999999999999999988765 1 2333444444 3345566666555543221 11111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEecCC
Q 041476 240 -EEKASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
....-.+.+++ ++|..||++||+-
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 11122233444 5789999999984
No 375
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.10 E-value=0.0067 Score=52.30 Aligned_cols=120 Identities=15% Similarity=-0.008 Sum_probs=60.9
Q ss_pred hHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCccc----CC
Q 041476 162 TFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQ----NR 237 (397)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~----~~ 237 (397)
+...++..... .-..+.|+|+.|+||||+++.+..... ... ..+.+ ........-..... ++.... ..
T Consensus 13 ~~~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~-~~i~i--ed~~E~~~~~~~~~-~~~~~~~~~~~~ 84 (186)
T cd01130 13 LQAAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAFIP---PDE-RIITI--EDTAELQLPHPNWV-RLVTRPGNVEGS 84 (186)
T ss_pred HHHHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhhcC---CCC-CEEEE--CCccccCCCCCCEE-EEEEecCCCCCC
Confidence 34444444443 347899999999999999999887651 111 22222 11100000000000 000000 11
Q ss_pred CHHHHHHHHHHHhcCCcEEEEEecCCCchhhhhcCCCCCCCCCCCcE-EEEEcCChhh
Q 041476 238 SFEEKASGIFNLLSKMKFLLLLDDIWERIDLAKMGVPFPASSRNASK-IVFTTRLVDV 294 (397)
Q Consensus 238 ~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~-IlvTtR~~~v 294 (397)
......+.++..++..+=.++++++.+.+.+.-+... ..|.. ++.|.....+
T Consensus 85 ~~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~a~-----~tGh~g~~~T~Ha~s~ 137 (186)
T cd01130 85 GEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAM-----NTGHPGGMTTIHANSA 137 (186)
T ss_pred CccCHHHHHHHHhccCCCEEEEEccCcHHHHHHHHHH-----hcCCCCceeeecCCCH
Confidence 1223445566677777888889999877666543322 33444 5555544433
No 376
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.09 E-value=0.0045 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998774
No 377
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.08 E-value=0.02 Score=49.96 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
.-.+++|+|+.|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999876
No 378
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.07 E-value=0.01 Score=49.43 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 160 ESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 160 ~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+++|.+.|.+ +++.++|.+|+|||||...+....
T Consensus 23 ~~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 23 GEGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CcCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 3457788888753 899999999999999999998875
No 379
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.06 E-value=0.013 Score=50.53 Aligned_cols=49 Identities=24% Similarity=0.356 Sum_probs=34.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~ 229 (397)
..+|+|-||-|+||||||+.+.++. . |. .++-.+.+++-++..+.++-+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l-~----~~-~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL-G----FK-VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh-C----Cc-eeeecccCChHHHHHHHhHHH
Confidence 4689999999999999999999998 2 21 223345555555555555543
No 380
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.02 E-value=0.071 Score=49.47 Aligned_cols=26 Identities=42% Similarity=0.565 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.++++.|+.|+|||||.+.+..-.
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 34699999999999999999998776
No 381
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.01 E-value=0.0053 Score=50.39 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 382
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.01 E-value=0.0061 Score=49.70 Aligned_cols=23 Identities=48% Similarity=0.754 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+.|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 383
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.01 E-value=0.014 Score=51.71 Aligned_cols=53 Identities=28% Similarity=0.345 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcc----CCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKFLH----TPNYFDIVIWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~----~~~~f~~~~wv~vs~~~~~~~i~~~i~~ 229 (397)
+..|+|++|.||||++..+...... .....+..+-++...+..++.++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 6899999999999777666655411 1134455666666666677777777766
No 384
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.00 E-value=0.018 Score=57.22 Aligned_cols=97 Identities=22% Similarity=0.177 Sum_probs=53.5
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEE-EEEeCCcC-CHHHHHHHHHHhhCcc-cCCC--
Q 041476 165 KVWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVI-WVVVSKDM-QLERIQQKIGERIGWL-QNRS-- 238 (397)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~-wv~vs~~~-~~~~i~~~i~~~l~~~-~~~~-- 238 (397)
+++++|.. +.-.-..|+|++|+|||||++.+.+... ..+-++.+ .+-|.+.+ .+.++...+--.+-.. ....
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~ 482 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 482 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHH
Confidence 34444443 3446788999999999999999999762 23444443 34455543 2333322220001111 1111
Q ss_pred ----HHHHHHHHHHHh--cCCcEEEEEecCC
Q 041476 239 ----FEEKASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 239 ----~~~~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
.....-.+.++| .++..||++|++-
T Consensus 483 ~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 483 DHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 112223334444 5789999999994
No 385
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.00 E-value=0.01 Score=55.98 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=38.7
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 155 TIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+||.+..+..++-.+.+....-+.|.|+.|+|||||++.+..-.
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 579999999888777777767778899999999999999997655
No 386
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.022 Score=49.81 Aligned_cols=119 Identities=19% Similarity=0.137 Sum_probs=65.0
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCe--EEEEEeCCcCCHHHHHHHHHHhhCcccCC------
Q 041476 166 VWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDI--VIWVVVSKDMQLERIQQKIGERIGWLQNR------ 237 (397)
Q Consensus 166 l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~--~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------ 237 (397)
++..|-.....-..|.|++|+|||||.+.++.-.....+.|-. +.-|.-+. +|+-.+...+..
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers---------EIag~~~gvpq~~~g~R~ 198 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS---------EIAGCLNGVPQHGRGRRM 198 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc---------hhhccccCCchhhhhhhh
Confidence 5555555555667899999999999999998876433334442 22222111 121111111000
Q ss_pred ---CHHHHHHHHHHHhc-CCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhhhh
Q 041476 238 ---SFEEKASGIFNLLS-KMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVCGL 297 (397)
Q Consensus 238 ---~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~ 297 (397)
+..-..+-+....+ -.+=.+|+|++....+-..+..+ ...|.+++.|..--.+...
T Consensus 199 dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta----~~~GVkli~TaHG~~iedl 258 (308)
T COG3854 199 DVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTA----LHAGVKLITTAHGNGIEDL 258 (308)
T ss_pred hhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHH----HhcCcEEEEeeccccHHHh
Confidence 10001111112222 34679999999876666555443 3568899988876555443
No 387
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.98 E-value=0.0059 Score=51.62 Aligned_cols=22 Identities=45% Similarity=0.615 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|.|+|.+|+|||||++.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999999887
No 388
>PRK06851 hypothetical protein; Provisional
Probab=95.98 E-value=0.21 Score=47.56 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=32.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc
Q 041476 172 EGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD 217 (397)
Q Consensus 172 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 217 (397)
++-.+++.|.|++|+|||||++.++.... ..-++..++-|-+.+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCC
Confidence 34458899999999999999999999882 334555555544433
No 389
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.97 E-value=0.0055 Score=52.67 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999876
No 390
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.97 E-value=0.071 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.+.|++|+||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999887
No 391
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.95 E-value=0.0061 Score=52.09 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+++.|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999998864
No 392
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.014 Score=53.22 Aligned_cols=26 Identities=31% Similarity=0.347 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+..+.|||++|.|||-+|+.|+...
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc
Confidence 45689999999999999999999987
No 393
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.94 E-value=0.019 Score=52.31 Aligned_cols=84 Identities=20% Similarity=0.228 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------------------
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL------------------- 234 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~------------------- 234 (397)
.-+++.|.|.+|+|||+++.++.... ......++||+....+ .++++...+ ++..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~~--~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~ 95 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEESP--EELLENARS-FGWDLEVYIEKGKLAILDAFLSE 95 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCCH--HHHHHHHHH-cCCCHHHHhhcCCEEEEEccccc
Confidence 55799999999999999999998887 3458889999987653 333333322 2110
Q ss_pred -c--------CCCHHHHHHHHHHHhcC-CcEEEEEecCC
Q 041476 235 -Q--------NRSFEEKASGIFNLLSK-MKFLLLLDDIW 263 (397)
Q Consensus 235 -~--------~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 263 (397)
. ..+...+...+.+.... +..-+|+|.+-
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~ 134 (260)
T COG0467 96 KGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSIT 134 (260)
T ss_pred cccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 1 12344455666665543 46788899885
No 394
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.93 E-value=0.012 Score=54.92 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=41.1
Q ss_pred CccccchhhHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVE------GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..|+|.++.+++|++.+.. ..-+++.++||.|.|||||+..+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999864 356899999999999999999998887
No 395
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.32 Score=45.57 Aligned_cols=50 Identities=32% Similarity=0.291 Sum_probs=36.5
Q ss_pred ccccchhhHHHHHHHHhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC
Q 041476 155 TIVGLESTFDKVWRCLVE--------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFD 207 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~ 207 (397)
++-|-+..++.+.+...= ...+-|.++||+|.|||-||+.++.+. ...|-
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fI 156 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---GANFI 156 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc---CCCcc
Confidence 445666666666665421 145678999999999999999999987 45553
No 396
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.92 E-value=0.0085 Score=51.01 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.|+|++|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999887
No 397
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.92 E-value=0.009 Score=51.15 Aligned_cols=23 Identities=35% Similarity=0.743 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 398
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.92 E-value=0.01 Score=52.21 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|++|+|||||++.+.--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 44689999999999999999987544
No 399
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.90 E-value=0.033 Score=57.79 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-..|+|+|..|+|||||++.+..-.
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987655
No 400
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.90 E-value=0.15 Score=51.07 Aligned_cols=263 Identities=17% Similarity=0.128 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 041476 8 QLTCDALSTGFINCTRRKAAYVSRLEHNLIAIQTQLQKLIEAKNDVMTRVANAEQQQLRRLNKVQGWLSRVEAVEAEVGE 87 (397)
Q Consensus 8 ~a~i~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~i~~ae~~~~~~~~~~~~Wl~~l~~~~~d~ed 87 (397)
..+++.+..+++.+=..+...-.|=-+....-+.+....+.. +..++...-...+.|+++-...+...
T Consensus 210 R~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~r~~~~~~~~~----------~~~~~~~~~~~~~~~i~r~~~~~~~~-- 277 (530)
T COG0488 210 RYFLDNVATHILELDRGKLTPYKGNYSSYLEQKAERLRQEAA----------AYEKQQKELAKEQEWIRRGKAAASKA-- 277 (530)
T ss_pred HHHHHHHhhheEEecCCceeEecCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhccchH--
Q ss_pred HhhhhHHHHHhhhhCCCCCCCcchhhhhhHHHHHHHHHHHHHHhcCCcccccccCCC-CCCcCCCCCCccccchhhHHHH
Q 041476 88 LTRDSSQEIEKLCLGGYCSKNCKSSYKFGKKVSKKLQLVATLMDEGAFEVVAEKVPQ-PAVDEKPLQPTIVGLESTFDKV 166 (397)
Q Consensus 88 ~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vGr~~~~~~l 166 (397)
+...+|.+...++.+.............+.......+. ....-.....--++.+.. ..|
T Consensus 278 -------------------k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l 337 (530)
T COG0488 278 -------------------KKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLL 337 (530)
T ss_pred -------------------HHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC-cee
Q ss_pred HHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE---------------------------eCCc
Q 041476 167 WRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVV---------------------------VSKD 217 (397)
Q Consensus 167 ~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~---------------------------vs~~ 217 (397)
.+-+.- ..-.-|+|+|+.|+|||||.+.+.... ... .+.+.+. ....
T Consensus 338 ~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~---~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~ 413 (530)
T COG0488 338 LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL---GPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPD 413 (530)
T ss_pred ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc---ccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcc
Q ss_pred CCHHHHHHHHHHhhCcc---------cCCCHHHHHHHHHHHhcCCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEE
Q 041476 218 MQLERIQQKIGERIGWL---------QNRSFEEKASGIFNLLSKMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFT 288 (397)
Q Consensus 218 ~~~~~i~~~i~~~l~~~---------~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvT 288 (397)
.. ..-.+..+..+..+ .-..-+...-.+...+-.++-+||||+--+.-+.+.+...--.-..-...||+.
T Consensus 414 ~~-e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~V 492 (530)
T COG0488 414 GD-EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLV 492 (530)
T ss_pred cc-HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEE
Q ss_pred cCChhhhhhhccCceeecCC
Q 041476 289 TRLVDVCGLMEAQKTFKVEC 308 (397)
Q Consensus 289 tR~~~v~~~~~~~~~~~l~~ 308 (397)
|.+........ ...+.+.+
T Consensus 493 SHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 493 SHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred eCCHHHHHhhc-ceEEEEcC
No 401
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.90 E-value=0.0081 Score=50.80 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+++|+|+.|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 402
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.90 E-value=0.029 Score=50.92 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=33.8
Q ss_pred ccccchhhHHHHHHHHhc----C---CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 155 TIVGLESTFDKVWRCLVE----G---QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~----~---~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|.--..+.++..+.+ + ++=+++.+|.+|+||...++.+++..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 356655555556665543 2 45599999999999999999999887
No 403
>PRK14530 adenylate kinase; Provisional
Probab=95.87 E-value=0.0073 Score=53.35 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.|.|+|++|+||||+++.+....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 404
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.87 E-value=0.066 Score=50.19 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+..++.++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 405
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.87 E-value=0.032 Score=54.06 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=51.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-CCHHHHHHHHHHhhCcc-------c-CCCH-----
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD-MQLERIQQKIGERIGWL-------Q-NRSF----- 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~i~~~i~~~l~~~-------~-~~~~----- 239 (397)
.-..++|.|..|+|||||++.+.... ..+..+...+... -.+.++...+...-... + ..+.
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~-----~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT-----EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC-----CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 44689999999999999999888764 1234444555544 34555555554432111 1 1111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEecCC
Q 041476 240 -EEKASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
...+-.+.+++ ++++.||++||+-
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChH
Confidence 11122334444 5789999999984
No 406
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.86 E-value=0.51 Score=43.79 Aligned_cols=144 Identities=13% Similarity=0.072 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcc-------CCCCCCeEEEEEe-CCcCCHHHHHHHHHHhhCc
Q 041476 163 FDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLH-------TPNYFDIVIWVVV-SKDMQLERIQQKIGERIGW 233 (397)
Q Consensus 163 ~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~-------~~~~f~~~~wv~v-s~~~~~~~i~~~i~~~l~~ 233 (397)
+..+.+.+..++. ++..++|..|.||+++|..+.+.... ...|-+...++.. +....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 3445555655544 56779999999999999998877511 1122222333321 1222333322 22222211
Q ss_pred ccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCC-hhhhhh-hccCceeecCCC
Q 041476 234 LQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRL-VDVCGL-MEAQKTFKVECL 309 (397)
Q Consensus 234 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~-~~v~~~-~~~~~~~~l~~L 309 (397)
. ..-.+.+=++|+|++... ...+.+... +-....++.+|++|.+ ..+... .+....+++.++
T Consensus 84 ~-------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~-LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l 149 (299)
T PRK07132 84 S-------------SFVQSQKKILIIKNIEKTSNSLLNALLKT-IEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP 149 (299)
T ss_pred C-------------CcccCCceEEEEecccccCHHHHHHHHHH-hhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCC
Confidence 0 001146778999998654 234444333 2222345666654543 334332 334678999999
Q ss_pred ChHhHHHHHHHH
Q 041476 310 ADQDAWELFQKK 321 (397)
Q Consensus 310 ~~~~~~~Lf~~~ 321 (397)
++++..+.+...
T Consensus 150 ~~~~l~~~l~~~ 161 (299)
T PRK07132 150 DQQKILAKLLSK 161 (299)
T ss_pred CHHHHHHHHHHc
Confidence 999998777653
No 407
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.86 E-value=0.039 Score=53.82 Aligned_cols=86 Identities=20% Similarity=0.263 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc------cCCC---HH----
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL------QNRS---FE---- 240 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~------~~~~---~~---- 240 (397)
+-..++|.|..|+|||||++.+.... . . -..+++..-.+...+.++.+.+...-... ...+ ..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~-~--~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGT-Q--C-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-C--C-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 45789999999999999999998765 1 1 12344443344445666666665442221 1111 11
Q ss_pred -HHHHHHHHHh--cCCcEEEEEecCC
Q 041476 241 -EKASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 241 -~~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
...-.+.+++ +++..||++||+-
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 1122344555 4789999999984
No 408
>PRK13947 shikimate kinase; Provisional
Probab=95.85 E-value=0.0078 Score=50.97 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999887
No 409
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.85 E-value=0.029 Score=46.13 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|+|+|++|+|||||.+.+....
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~ 23 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ 23 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC
Confidence 6899999999999999998763
No 410
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.84 E-value=0.042 Score=53.40 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHHhhCcc-------c-CCC-HHH--
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGERIGWL-------Q-NRS-FEE-- 241 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~~l~~~-------~-~~~-~~~-- 241 (397)
.-..++|+|..|+|||||++.+.+.. +.+..++..++. ...+.+.+.+....-... . ... ...
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 45689999999999999999887754 234455555554 344556666554321111 1 111 111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEecCC
Q 041476 242 ---KASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 242 ---~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
..-.+.+++ ++++.||++||+-
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 122344444 4789999999994
No 411
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.83 E-value=0.008 Score=47.32 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999999776
No 412
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.82 E-value=0.017 Score=58.87 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGER 230 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~ 230 (397)
..++..|.|.+|.||||++..+.....+....-...+.+.....-....+.+.+...
T Consensus 166 ~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 166 TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 347899999999999999998887652211111245666666555555666555543
No 413
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.82 E-value=0.042 Score=54.20 Aligned_cols=58 Identities=22% Similarity=0.266 Sum_probs=35.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHHhhCc
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGERIGW 233 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~~l~~ 233 (397)
.++++++|+.|+||||++.+++.... .......+..+.... .....+-+....+.++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV-MRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCC
Confidence 47999999999999999999998762 111112344554432 12333444444555444
No 414
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.82 E-value=0.0085 Score=52.41 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+++|+|++|+|||||++.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998875
No 415
>PRK13949 shikimate kinase; Provisional
Probab=95.81 E-value=0.0077 Score=51.01 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-|.|+|++|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999887
No 416
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.81 E-value=0.012 Score=55.43 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.++|.+..+..+.-.+.+.+..-+.+.|++|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3579999988887765554455668899999999999999997665
No 417
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.80 E-value=0.052 Score=50.60 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+-.+++|.|+.|.|||||.+.+....
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 418
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.79 E-value=0.047 Score=53.26 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-CCHHHHHHHHHHhhCcc-------cCCC--HHH--
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD-MQLERIQQKIGERIGWL-------QNRS--FEE-- 241 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~i~~~i~~~l~~~-------~~~~--~~~-- 241 (397)
.-..++|+|..|+|||||++.+.... ..+.++...+... ....++...+...-... +..+ ...
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 44679999999999999999987654 1234444444433 34556666655443222 1111 111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEecCC
Q 041476 242 ---KASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 242 ---~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
.+-.+.+++ ++++.||++||+-
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchh
Confidence 122344454 5789999999985
No 419
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.79 E-value=0.049 Score=52.92 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHHhhCcc--------cCCCHHH---
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGERIGWL--------QNRSFEE--- 241 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~~--- 241 (397)
+-..++|.|..|+|||||.+.+++.. ..+.++++-+++.. ...++....+..-... .+.+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 45689999999999999999998875 23567777776654 4555554433321111 1111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEecCC
Q 041476 242 ---KASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 242 ---~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
..-.+.+++ ++++.||++||+-
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 112244444 5799999999994
No 420
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.78 E-value=0.0067 Score=50.98 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998876
No 421
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.77 E-value=0.054 Score=53.09 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC--CeEEEEEeCCc-CCHHHHHHHHHHhhCcc-------cCCC--H--
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYF--DIVIWVVVSKD-MQLERIQQKIGERIGWL-------QNRS--F-- 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f--~~~~wv~vs~~-~~~~~i~~~i~~~l~~~-------~~~~--~-- 239 (397)
.-.-++|.|..|+|||||+..+.+.. ...+.+ ..++++-+++. ..+.++++++...-... +... .
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 34678999999999999999998875 221111 15666777655 35667777776543222 1111 1
Q ss_pred ---HHHHHHHHHHhc---CCcEEEEEecCC
Q 041476 240 ---EEKASGIFNLLS---KMKFLLLLDDIW 263 (397)
Q Consensus 240 ---~~~~~~l~~~L~---~kr~LlVlDdv~ 263 (397)
....-.+.++++ +++.||++||+-
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 112233556665 688999999984
No 422
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.77 E-value=0.0096 Score=51.28 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998765
No 423
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.77 E-value=0.0086 Score=52.38 Aligned_cols=25 Identities=28% Similarity=0.141 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
...++.|.|+.|.||||+.+.+..-
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999888643
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.77 E-value=0.0051 Score=53.77 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINN 197 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~ 197 (397)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999983
No 425
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.76 E-value=0.017 Score=52.37 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhh
Q 041476 11 CDALSTGFINCTRRKAAYVSRLEHNLIAIQTQLQKLIEAKNDVMTRVANAEQQQLRRLNKVQGWLSRVEAVEAEVGELTR 90 (397)
Q Consensus 11 i~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~i~~ae~~~~~~~~~~~~Wl~~l~~~~~d~ed~ld 90 (397)
++-+++.|-.+.......+.-++.+++-++.+++.+|.||+.+ +++.+.+. .....+..++-..||++|+++|
T Consensus 298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh-~~~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKH-DTNEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhh-hhhhhHHHHHHHHHhheeeeee
Confidence 5778888888888888888889999999999999999999986 44433332 3388999999999999999998
Q ss_pred hh
Q 041476 91 DS 92 (397)
Q Consensus 91 ~~ 92 (397)
-+
T Consensus 371 aC 372 (402)
T PF12061_consen 371 AC 372 (402)
T ss_pred hh
Confidence 65
No 426
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.76 E-value=0.021 Score=54.39 Aligned_cols=122 Identities=18% Similarity=0.219 Sum_probs=64.1
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHH--HHHHhhCcccCCCHHHHH
Q 041476 166 VWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQ--KIGERIGWLQNRSFEEKA 243 (397)
Q Consensus 166 l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~--~i~~~l~~~~~~~~~~~~ 243 (397)
+.+.+. ..-+.|.|+|+.|+||||+++.+.+........=..++.+.-.-.+....+.. ....|.. ...+.....
T Consensus 126 ~~~~~~-~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~--v~~~~~~~~ 202 (358)
T TIGR02524 126 IIDAIA-PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSE--IPRHLNNFA 202 (358)
T ss_pred HHHHHh-ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeee--ccccccCHH
Confidence 444444 34589999999999999999998877511000001222222111111111100 0011110 111223455
Q ss_pred HHHHHHhcCCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhh
Q 041476 244 SGIFNLLSKMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDV 294 (397)
Q Consensus 244 ~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v 294 (397)
..++..|+..+-.+++.++.+.+........ ...|..++-|....++
T Consensus 203 ~~l~~aLR~~Pd~i~vGEiRd~et~~~al~a----a~tGh~v~tTlHa~~~ 249 (358)
T TIGR02524 203 AGVRNALRRKPHAILVGEARDAETISAALEA----ALTGHPVYTTLHSSGV 249 (358)
T ss_pred HHHHHHhccCCCEEeeeeeCCHHHHHHHHHH----HHcCCcEEEeeccCCH
Confidence 6677788889999999999776655432222 2334456655555443
No 427
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.75 E-value=0.045 Score=51.15 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|.|+.|.|||||.+.+..-.
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998764
No 428
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.75 E-value=0.043 Score=46.48 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=43.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----cCCCHHHHHHHHHHHh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-----QNRSFEEKASGIFNLL 250 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----~~~~~~~~~~~l~~~L 250 (397)
.++.|.|.+|+||||+|..+.... . . ..+++.....+ -.+..+.|....... .......+...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~-~--~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS-G--L---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc-C--C---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368999999999999999998765 1 1 13344433333 344555554332211 1111112333343333
Q ss_pred cCCcEEEEEecC
Q 041476 251 SKMKFLLLLDDI 262 (397)
Q Consensus 251 ~~kr~LlVlDdv 262 (397)
.+ .-++++|.+
T Consensus 75 ~~-~~~VlID~L 85 (170)
T PRK05800 75 AP-GRCVLVDCL 85 (170)
T ss_pred CC-CCEEEehhH
Confidence 32 337889987
No 429
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.75 E-value=0.023 Score=49.09 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 430
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.75 E-value=0.008 Score=50.08 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 041476 177 IIGLYGMGGVGKTTLLAQIN 196 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~ 196 (397)
.|.|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999997
No 431
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.75 E-value=0.0083 Score=51.68 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478899999999999999997765
No 432
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.75 E-value=0.012 Score=51.68 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=26.5
Q ss_pred HhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 170 LVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 170 L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.+.++++|+++|+.|+|||||...+....
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 444679999999999999999999998875
No 433
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.75 E-value=0.061 Score=52.93 Aligned_cols=90 Identities=16% Similarity=0.119 Sum_probs=52.7
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhhhccC-----CCCCCeEEEEEeCCcCC-HHHHHHHHHHhhCcc-------cCCC-
Q 041476 174 QFGIIGLYGMGGVGKTTLL-AQINNKFLHT-----PNYFDIVIWVVVSKDMQ-LERIQQKIGERIGWL-------QNRS- 238 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~vs~~~~-~~~i~~~i~~~l~~~-------~~~~- 238 (397)
.-.-++|.|..|+|||+|| ..+.+.. .. .++-+.++++.+++..+ ..++.+.+-+.-... ...+
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 4457889999999999997 5566653 11 13456788888887753 444333333322111 1111
Q ss_pred -HHH-----HHHHHHHHh--cCCcEEEEEecCCC
Q 041476 239 -FEE-----KASGIFNLL--SKMKFLLLLDDIWE 264 (397)
Q Consensus 239 -~~~-----~~~~l~~~L--~~kr~LlVlDdv~~ 264 (397)
..+ ..-.+.+++ +++..|||+||+-.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 111 112234444 47899999999953
No 434
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.73 E-value=0.046 Score=53.43 Aligned_cols=87 Identities=17% Similarity=0.255 Sum_probs=49.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHh--hCcc-----c-CCCH-----
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGER--IGWL-----Q-NRSF----- 239 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~--l~~~-----~-~~~~----- 239 (397)
..-..++|+|..|+|||||++.+.... . . -...+++.-...-+..++....+.. +... + ..+.
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~-~--~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT-S--A-DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc-C--C-CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 355789999999999999999888765 1 1 2234444333333455544332211 1111 1 1111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEecCC
Q 041476 240 -EEKASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
...+-.+.+++ +++..||++||+-
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChH
Confidence 11222344444 4789999999984
No 435
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.73 E-value=0.0088 Score=49.55 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998876
No 436
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.73 E-value=0.039 Score=46.65 Aligned_cols=79 Identities=14% Similarity=0.191 Sum_probs=45.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCc-ccCCCHHHHHHHHHHHhcC--C
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGW-LQNRSFEEKASGIFNLLSK--M 253 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~-~~~~~~~~~~~~l~~~L~~--k 253 (397)
++.|.|.+|+|||++|.++.... ...++++.-...++. ++.+.|.+-... +......+....+.+.+.. +
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 36799999999999999987552 235677776666653 344443332111 1122222222334444421 2
Q ss_pred cEEEEEecC
Q 041476 254 KFLLLLDDI 262 (397)
Q Consensus 254 r~LlVlDdv 262 (397)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347999987
No 437
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.72 E-value=0.0088 Score=52.97 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-..|+|+|++|+|||||.+.+.--.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999997543
No 438
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.72 E-value=0.011 Score=51.45 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|.|.+|+||||+|+.+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998875
No 439
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.71 E-value=0.0099 Score=52.31 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|.|.|++|+||||+|+.+...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998775
No 440
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.70 E-value=0.085 Score=48.30 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=36.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGER 230 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~ 230 (397)
-.++.|.|++|+||||++.++..... ..+-..++|++.... ..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 45888999999999999999887752 222356888877553 35555555443
No 441
>PRK13975 thymidylate kinase; Provisional
Probab=95.70 E-value=0.01 Score=51.54 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..|.|.|+.|+||||+++.+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999988
No 442
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.68 E-value=0.041 Score=53.51 Aligned_cols=85 Identities=21% Similarity=0.282 Sum_probs=47.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHHhhCcc--------cCC------C
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGERIGWL--------QNR------S 238 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~~l~~~--------~~~------~ 238 (397)
+-..++|.|..|+|||||++.+.... . .+..+...+.. .....++....+..-... ... .
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~-~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYT-Q----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhccc-C----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 45789999999999999999887754 1 22222232322 223344443433322111 111 1
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEecCC
Q 041476 239 FEEKASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 239 ~~~~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
..+.+..+.+++ +++..||++||+-
T Consensus 229 a~e~a~~iAEyfr~~g~~Vll~~Dslt 255 (434)
T PRK07196 229 ATELCHAIATYYRDKGHDVLLLVDSLT 255 (434)
T ss_pred HHHHHHHHHHHhhhccCCEEEeecchh
Confidence 122333344444 4789999999984
No 443
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.67 E-value=0.062 Score=55.76 Aligned_cols=25 Identities=40% Similarity=0.587 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++.++|+.|+||||++.+++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4699999999999999999888766
No 444
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.67 E-value=0.059 Score=52.36 Aligned_cols=87 Identities=24% Similarity=0.260 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc--------cCCCH------
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL--------QNRSF------ 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~--------~~~~~------ 239 (397)
.-..++|+|..|+|||||++.++... + . ...++...-.+.....+.+...+..-+.. ...+.
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~--~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNA-K--A-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-C--C-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 45688999999999999999998775 1 1 22333332233456667766555442221 11111
Q ss_pred HHHHHHHHHHh--cCCcEEEEEecCCC
Q 041476 240 EEKASGIFNLL--SKMKFLLLLDDIWE 264 (397)
Q Consensus 240 ~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (397)
...+..+.+++ ++++.||++||+-.
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 11222334444 47899999999954
No 445
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.011 Score=49.97 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++.|.||+|+|||||++.++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578899999999999999998874
No 446
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.65 E-value=0.016 Score=48.51 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=25.6
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 171 VEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 171 ~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+..+|.++|.+|+||||+|..++...
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 34566799999999999999999999987
No 447
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.65 E-value=0.12 Score=49.37 Aligned_cols=87 Identities=24% Similarity=0.214 Sum_probs=47.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHHhhCcc--cCCCHHHHHHHHHHHh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGERIGWL--QNRSFEEKASGIFNLL 250 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~~l~~~--~~~~~~~~~~~l~~~L 250 (397)
+.+++.++||.||||||-.-+++..+ .....=..+..++... .-...+-++.-++-++.+ -..+..++...+.. +
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA-L 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH-h
Confidence 47899999999999985544444444 1122333455565432 223445555666666655 33344444444333 2
Q ss_pred cCCcEEEEEecCC
Q 041476 251 SKMKFLLLLDDIW 263 (397)
Q Consensus 251 ~~kr~LlVlDdv~ 263 (397)
++. =+|.+|=+.
T Consensus 280 ~~~-d~ILVDTaG 291 (407)
T COG1419 280 RDC-DVILVDTAG 291 (407)
T ss_pred hcC-CEEEEeCCC
Confidence 232 355667553
No 448
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.64 E-value=0.011 Score=45.65 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 041476 175 FGIIGLYGMGGVGKTTLLAQIN 196 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~ 196 (397)
-..++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3688999999999999999975
No 449
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.63 E-value=0.029 Score=48.54 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999887
No 450
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.61 E-value=0.012 Score=50.05 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|.|+|+.|+||||+++.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3568999999999999999999876
No 451
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.60 E-value=0.099 Score=49.12 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=38.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIG 228 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~ 228 (397)
+-..++|.|..|+|||+|++++.+.. +-+.++++.+++.. .+.+++.++-
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 44689999999999999999998864 23578888887654 5666776654
No 452
>PLN02924 thymidylate kinase
Probab=95.59 E-value=0.057 Score=47.81 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=34.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~ 229 (397)
...|+|-|..|+||||+++.+.+.. .. ..+....+-..+......+.+++++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l-~~-~g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFL-KG-LGVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-Hh-cCCCceeeeCCCCCChHHHHHHHHHh
Confidence 3689999999999999999999998 32 23443333222223334455555544
No 453
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=95.59 E-value=0.088 Score=51.54 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=48.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHHhhCcc-------c-CCCH-H---
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGERIGWL-------Q-NRSF-E--- 240 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~~l~~~-------~-~~~~-~--- 240 (397)
+-..++|.|..|+|||||++.+.... . -+..+...+.. ...+.++.......-... . .... .
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~~----~-~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~ 236 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARNT----E-ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLK 236 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----C-CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence 44688999999999999999888765 1 12233333333 224444444443321111 1 1111 1
Q ss_pred --HHHHHHHHHh--cCCcEEEEEecCC
Q 041476 241 --EKASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 241 --~~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
..+-.+.+++ +++..||++||+-
T Consensus 237 ~~~~a~t~AE~frd~G~~Vll~~DslT 263 (440)
T TIGR01026 237 GAYVATAIAEYFRDQGKDVLLLMDSVT 263 (440)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChH
Confidence 1122233444 5789999999984
No 454
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.59 E-value=0.01 Score=49.16 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998886
No 455
>PRK15453 phosphoribulokinase; Provisional
Probab=95.58 E-value=0.083 Score=48.16 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+..+|+|.|.+|+||||+++.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998766
No 456
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.58 E-value=0.015 Score=52.04 Aligned_cols=26 Identities=38% Similarity=0.599 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++..|.++||+|+||||..+.++.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH
Confidence 45688899999999999999999988
No 457
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.58 E-value=0.099 Score=49.17 Aligned_cols=36 Identities=28% Similarity=0.532 Sum_probs=28.3
Q ss_pred HHHHHHHh--cCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 164 DKVWRCLV--EGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 164 ~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..|++.+. .++..+|+|.|++|+|||||+..+....
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444443 2467899999999999999999988877
No 458
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.58 E-value=0.0053 Score=54.49 Aligned_cols=172 Identities=18% Similarity=0.174 Sum_probs=80.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----cCCCHHHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-----QNRSFEEKASGIFN 248 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----~~~~~~~~~~~l~~ 248 (397)
+.+++.|+|+.|.||||+.+.+.--.. -. ..-++|..... ...+...++..++.. .......-...+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~--la--~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~ 102 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVL--MA--QIGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAA 102 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH--HH--HhCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHH
Confidence 457999999999999999988764320 00 00011111110 000111122222211 11111222223333
Q ss_pred Hh--cCCcEEEEEecC---CCchhhhh----cCCCCCCCCCCCcEEEEEcCChhhhhhhccCc---eeecCCCChH--hH
Q 041476 249 LL--SKMKFLLLLDDI---WERIDLAK----MGVPFPASSRNASKIVFTTRLVDVCGLMEAQK---TFKVECLADQ--DA 314 (397)
Q Consensus 249 ~L--~~kr~LlVlDdv---~~~~~~~~----l~~~l~~~~~~gs~IlvTtR~~~v~~~~~~~~---~~~l~~L~~~--~~ 314 (397)
.+ -.++-|++||+. .+..+-.. +... +.. ..|+.+|+||...++........ ..++.....+ +.
T Consensus 103 il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~-l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~ 180 (222)
T cd03285 103 ILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEY-IAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRT 180 (222)
T ss_pred HHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHH-HHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCc
Confidence 34 357889999999 33222111 1112 211 34678999999877655433221 1222211111 11
Q ss_pred HHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcC
Q 041476 315 WELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSS 360 (397)
Q Consensus 315 ~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~ 360 (397)
. .|..++.... + ....+-.+++++ |+|-.+.--|..+..
T Consensus 181 ~-~~~Y~l~~G~--~---~~s~a~~~a~~~-g~p~~vi~~A~~~~~ 219 (222)
T cd03285 181 L-TMLYKVEKGA--C---DQSFGIHVAELA-NFPKEVIEMAKQKAL 219 (222)
T ss_pred E-eEEEEEeeCC--C---CCcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 1 1111111111 1 134477777776 899888877766643
No 459
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.58 E-value=0.056 Score=53.14 Aligned_cols=88 Identities=22% Similarity=0.301 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHH-----hhC----cc----cCCCH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGE-----RIG----WL----QNRSF 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~-----~l~----~~----~~~~~ 239 (397)
.-.-++|.|.+|+|||+|+..+..... +.+-+.++++-+++.. ...+++..+.. .-. .. ...+.
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~--~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~ 237 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 237 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHH--HhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCC
Confidence 446789999999999999998887741 1223778888887664 46777777766 211 11 11111
Q ss_pred --------HHHHHHHHHHhc--CC-cEEEEEecCC
Q 041476 240 --------EEKASGIFNLLS--KM-KFLLLLDDIW 263 (397)
Q Consensus 240 --------~~~~~~l~~~L~--~k-r~LlVlDdv~ 263 (397)
...+-.+.++++ ++ ..||++||+-
T Consensus 238 p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslT 272 (494)
T CHL00060 238 PPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIF 272 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccch
Confidence 122344667774 34 8999999995
No 460
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.57 E-value=0.15 Score=57.48 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++-|.++|++|+|||.||+.++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45688999999999999999999986
No 461
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.57 E-value=0.013 Score=50.95 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+..++.|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998876
No 462
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.57 E-value=0.11 Score=50.64 Aligned_cols=86 Identities=22% Similarity=0.324 Sum_probs=51.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHHhhCcc-------c-CCCHH---
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGERIGWL-------Q-NRSFE--- 240 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~~l~~~-------~-~~~~~--- 240 (397)
..-..++|.|..|+|||||.+.+.... . .+......+.. ..++.+...+........ . ..+..
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~---~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~ 217 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARGA---S--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERL 217 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCCC---C--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHH
Confidence 345688999999999999999998765 1 23334444433 445556655554432211 1 11111
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEecCC
Q 041476 241 ---EKASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 241 ---~~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
...-.+.+++ ++++.|+++|++-
T Consensus 218 ~~~~~a~~~AE~f~~~g~~Vl~~~Dslt 245 (422)
T TIGR02546 218 KAAYTATAIAEYFRDQGKRVLLMMDSLT 245 (422)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCch
Confidence 1222344444 4689999999995
No 463
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=95.56 E-value=0.1 Score=50.43 Aligned_cols=77 Identities=27% Similarity=0.271 Sum_probs=57.8
Q ss_pred ccccchhhHHHHHHHHh---cCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-------CHHHHH
Q 041476 155 TIVGLESTFDKVWRCLV---EGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-------QLERIQ 224 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~---~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-------~~~~i~ 224 (397)
--|||+.+++.|.+.|. ++...+-.|.|.=|.|||.+.+.+.+... ...| .+..+.+++.. ....++
T Consensus 26 ~~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~--~~~f-vvs~v~ls~e~~lh~~~g~~~~~Y 102 (416)
T PF10923_consen 26 IAVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERAL--EKGF-VVSEVDLSPERPLHGTGGQLEALY 102 (416)
T ss_pred eeechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHH--HcCC-EEEEEecCCCcccccccccHHHHH
Confidence 35999999999988875 46778889999999999999999988872 2233 45566665532 456788
Q ss_pred HHHHHhhCcc
Q 041476 225 QKIGERIGWL 234 (397)
Q Consensus 225 ~~i~~~l~~~ 234 (397)
++|++.+...
T Consensus 103 r~l~~nL~t~ 112 (416)
T PF10923_consen 103 RELMRNLSTK 112 (416)
T ss_pred HHHHHhcCCC
Confidence 8888877643
No 464
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.55 E-value=0.011 Score=51.18 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.|++|+|++|+|||||.+.+..=.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 44699999999999999999986543
No 465
>PTZ00494 tuzin-like protein; Provisional
Probab=95.55 E-value=0.12 Score=49.78 Aligned_cols=159 Identities=13% Similarity=0.038 Sum_probs=97.5
Q ss_pred CCccccchhhHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 041476 153 QPTIVGLESTFDKVWRCLVE---GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~ 229 (397)
...+|.|+.+-..+-..|.. ..++++.+.|..|.||++|.+...... . -..++|.+... ++-+++|.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~-----~paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-G-----VALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-C-----CCeEEEEecCC---cchHHHHHH
Confidence 35679998877766666644 478999999999999999999887765 2 23567777765 566788888
Q ss_pred hhCcccCCCHHHHHHHH-------HHHhcCCcEEEEEecCC--Cc-hhhhhcCCCCCCCCCCCcEEEEEcCChhhhh---
Q 041476 230 RIGWLQNRSFEEKASGI-------FNLLSKMKFLLLLDDIW--ER-IDLAKMGVPFPASSRNASKIVFTTRLVDVCG--- 296 (397)
Q Consensus 230 ~l~~~~~~~~~~~~~~l-------~~~L~~kr~LlVlDdv~--~~-~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~--- 296 (397)
.++.+....-.++.+-+ .....++.-+||+-==+ +. ..+++.. . +.+...-|.|++---.+....
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-a-LacDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-S-LVSDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-H-HHccchhheeeeechHhhhchhhc
Confidence 88876222111222222 22234566666664221 11 1222221 1 334445577876544444321
Q ss_pred hhccCceeecCCCChHhHHHHHHHHh
Q 041476 297 LMEAQKTFKVECLADQDAWELFQKKV 322 (397)
Q Consensus 297 ~~~~~~~~~l~~L~~~~~~~Lf~~~~ 322 (397)
.+.--..|.+.+++..++.+.-++..
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhccc
Confidence 11223467889999999999877754
No 466
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.54 E-value=0.012 Score=51.52 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
..+.+.|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5678999999999999999999754
No 467
>PRK14526 adenylate kinase; Provisional
Probab=95.51 E-value=0.017 Score=50.81 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.|+|++|+||||+++.+....
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998765
No 468
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.51 E-value=0.055 Score=54.76 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+-..++|+|+.|+|||||++.+..-.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55789999999999999999997665
No 469
>COG4240 Predicted kinase [General function prediction only]
Probab=95.51 E-value=0.075 Score=46.39 Aligned_cols=81 Identities=14% Similarity=0.070 Sum_probs=52.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCc-------ccCCCHHHHHHH
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGW-------LQNRSFEEKASG 245 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~-------~~~~~~~~~~~~ 245 (397)
+++-+++|.|+-|+||||++..+++.. ..++- ..++..+...-+-...-...++++.+. ....|..-..+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L-~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLL-AAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHH-HHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 456799999999999999999999998 32332 356666555444333333444555322 145666777777
Q ss_pred HHHHhcCCcE
Q 041476 246 IFNLLSKMKF 255 (397)
Q Consensus 246 l~~~L~~kr~ 255 (397)
|....+++.-
T Consensus 126 Lnai~~g~~~ 135 (300)
T COG4240 126 LNAIARGGPT 135 (300)
T ss_pred HHHHhcCCCC
Confidence 7777777643
No 470
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.06 Score=47.07 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~ 229 (397)
..|+|-|+-|+||||.++.+++... ...-.++|..-+....+.+.+++++.
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~---~~g~~v~~trEP~~~~ige~iR~~ll 54 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLE---ERGIKVVLTREPGGTPIGEKIRELLL 54 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEeCCCCChHHHHHHHHHc
Confidence 5789999999999999999999982 33225555555544455555555543
No 471
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.50 E-value=0.076 Score=52.86 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||++.+....
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 472
>PLN02200 adenylate kinase family protein
Probab=95.50 E-value=0.014 Score=52.26 Aligned_cols=26 Identities=31% Similarity=0.226 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+.+|.|.|++|+||||+|+.+....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34688999999999999999998876
No 473
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.50 E-value=0.071 Score=51.93 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccC-CCCCC---------eEEEEEeCCcCCHHHHHHHHHHhhC-cc-------c
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHT-PNYFD---------IVIWVVVSKDMQLERIQQKIGERIG-WL-------Q 235 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~-~~~f~---------~~~wv~vs~~~~~~~i~~~i~~~l~-~~-------~ 235 (397)
.-.-++|.|.+|+|||||+.++.+..... ....| .+++..+++.....+.+...+..-+ .. +
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 44678999999999999999998776100 00012 5677777777655555555554433 21 1
Q ss_pred C-C-CHH-----HHHHHHHHHhc---CCcEEEEEecCC
Q 041476 236 N-R-SFE-----EKASGIFNLLS---KMKFLLLLDDIW 263 (397)
Q Consensus 236 ~-~-~~~-----~~~~~l~~~L~---~kr~LlVlDdv~ 263 (397)
. . ... ..+-.+.++++ +++.||++||+-
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 1 1 111 11223555555 589999999994
No 474
>PRK06761 hypothetical protein; Provisional
Probab=95.49 E-value=0.028 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++|.|.|++|+||||+++.+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999987
No 475
>PRK13948 shikimate kinase; Provisional
Probab=95.48 E-value=0.015 Score=49.77 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....|.++|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999886
No 476
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.071 Score=45.20 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-..+-|.|+.|+|||||.+.++-=.
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHccc
Confidence 3578899999999999999998655
No 477
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.48 E-value=0.03 Score=52.42 Aligned_cols=110 Identities=13% Similarity=0.011 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc--cCCCHHHHHHHHHHHhc
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL--QNRSFEEKASGIFNLLS 251 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~--~~~~~~~~~~~l~~~L~ 251 (397)
....+.|.|+.|+|||||++.+..... ... .++.+.-.....+.. .....-.... .....-...+.+...|+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~---~~~-~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr 216 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIP---KDE-RIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSCLR 216 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC---ccc-cEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHHhc
Confidence 347899999999999999999887652 111 122221111111100 0000000000 01111234455666788
Q ss_pred CCcEEEEEecCCCchhhhhcCCCCCCCCCCCcE-EEEEcCChhh
Q 041476 252 KMKFLLLLDDIWERIDLAKMGVPFPASSRNASK-IVFTTRLVDV 294 (397)
Q Consensus 252 ~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~-IlvTtR~~~v 294 (397)
..+=.|++|++.+.+.+.-+... . .|.. ++.|+...+.
T Consensus 217 ~~pd~ii~gE~r~~e~~~~l~a~--~---~g~~~~i~T~Ha~~~ 255 (308)
T TIGR02788 217 MRPDRIILGELRGDEAFDFIRAV--N---TGHPGSITTLHAGSP 255 (308)
T ss_pred CCCCeEEEeccCCHHHHHHHHHH--h---cCCCeEEEEEeCCCH
Confidence 88889999999876665543322 1 2332 4677766554
No 478
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.46 E-value=0.056 Score=52.99 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCe
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDI 208 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~ 208 (397)
.-+-.+|+|++|+||||+.+.++........+++.
T Consensus 100 ~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~ 134 (614)
T KOG0927|consen 100 RGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF 134 (614)
T ss_pred CCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch
Confidence 34678999999999999999999987555555553
No 479
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.45 E-value=0.064 Score=48.50 Aligned_cols=75 Identities=15% Similarity=0.095 Sum_probs=42.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC--CHHHHHHHHHHhh----C--c--ccCCCHHHHHHHH
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM--QLERIQQKIGERI----G--W--LQNRSFEEKASGI 246 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~i~~~i~~~l----~--~--~~~~~~~~~~~~l 246 (397)
+|+|.|.+|+||||+++.+.+.+ ...+ ..+..++...-+ +-...-..+.... + . +...+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-AREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999998877 2111 123444432221 2122222222211 1 1 2455667777777
Q ss_pred HHHhcCCc
Q 041476 247 FNLLSKMK 254 (397)
Q Consensus 247 ~~~L~~kr 254 (397)
+.+.+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 77776653
No 480
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.44 E-value=0.11 Score=52.19 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----------------cC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-----------------QN 236 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------------~~ 236 (397)
.-.++.|.|.+|+|||+|+.++..... ..-..++|++.... +.++.+.+ .+++.. ..
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~---~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 345 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAAC---RRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPES 345 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCccc
Confidence 346889999999999999999887762 33467888877654 44554443 233321 11
Q ss_pred CCHHHHHHHHHHHhcC-CcEEEEEecCC
Q 041476 237 RSFEEKASGIFNLLSK-MKFLLLLDDIW 263 (397)
Q Consensus 237 ~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 263 (397)
....+....+.+.+.. +.-++|+|.+.
T Consensus 346 ~~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 346 YGLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 2334556666666644 55689999984
No 481
>PRK14532 adenylate kinase; Provisional
Probab=95.42 E-value=0.013 Score=50.58 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|.|.|++|+||||+|+.+....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999998876
No 482
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.42 E-value=0.011 Score=49.58 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~ 198 (397)
|+|+|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999866
No 483
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.40 E-value=0.015 Score=51.52 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEE-------------EEEeCCcCCHHHHHHHHHHhhCcccCCCHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVI-------------WVVVSKDMQLERIQQKIGERIGWLQNRSFE 240 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~-------------wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (397)
..+++.|.|+.|.||||+.+.+.-... ..+-.+.+ +..+....++..- .....
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~--la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~------------~StF~ 95 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITI--MAQIGSFVPASSATLSIFDSVLTRMGASDSIQHG------------MSTFM 95 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--HHhCCCEEEcCceEEeccceEEEEecCccccccc------------cchHH
Confidence 446889999999999999999877321 11111112 2222222111111 11111
Q ss_pred HHHHHHHHHhc--CCcEEEEEecCCCch---h----hhhcCCCCCCCCCCCcEEEEEcCChhhhhhh
Q 041476 241 EKASGIFNLLS--KMKFLLLLDDIWERI---D----LAKMGVPFPASSRNASKIVFTTRLVDVCGLM 298 (397)
Q Consensus 241 ~~~~~l~~~L~--~kr~LlVlDdv~~~~---~----~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~~ 298 (397)
.-..++...++ +++-|++||++.... + ...+... +.. ..++.+|++|....++...
T Consensus 96 ~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~-l~~-~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 96 VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHY-LLE-EKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHH-HHh-ccCCeEEEEcccHHHHHHH
Confidence 12223333333 478999999984311 1 1112222 222 2478899999999886544
No 484
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=95.40 E-value=0.051 Score=53.29 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCcHHHHHH-HHHhhhccCCCCCCe-EEEEEeCCcC-CHHHHHHHHHHhhCcc-------cCCC--HHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLA-QINNKFLHTPNYFDI-VIWVVVSKDM-QLERIQQKIGERIGWL-------QNRS--FEE 241 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~-~v~~~~~~~~~~f~~-~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~--~~~ 241 (397)
.-.-++|.|..|+|||+||. .+.+.. .-+. ++++.+++.. ...++.+.+...-... +..+ ..+
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~q~-----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r 214 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILNQK-----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQ 214 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHhcc-----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHH
Confidence 44678999999999999964 454442 2343 4777777554 5667777766542221 1111 111
Q ss_pred H-----HHHHHHHh--cCCcEEEEEecCC
Q 041476 242 K-----ASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 242 ~-----~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
. .-.+.+++ ++++.|||+||+-
T Consensus 215 ~~ap~~a~aiAEyfr~~G~~VLlv~DdlT 243 (485)
T CHL00059 215 YLAPYTGAALAEYFMYRGRHTLIIYDDLS 243 (485)
T ss_pred HHHHHHHhhHHHHHHHcCCCEEEEEcChh
Confidence 1 12233443 4789999999985
No 485
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.37 E-value=0.12 Score=47.12 Aligned_cols=87 Identities=22% Similarity=0.203 Sum_probs=48.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHHhhCcc--cCCCHHHHHHHHHHHh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGERIGWL--QNRSFEEKASGIFNLL 250 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--~~~~~~~~~~~l~~~L 250 (397)
+..+++++|++|+||||++..+..... ..-..+.+++..... ....-+....+.++.. ...+...+.+.+...-
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~---~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 150 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 150 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHH
Confidence 447999999999999999999887762 112345555543221 1222223333333333 2234444444443322
Q ss_pred c-CCcEEEEEecCC
Q 041476 251 S-KMKFLLLLDDIW 263 (397)
Q Consensus 251 ~-~kr~LlVlDdv~ 263 (397)
+ .+.=++++|..-
T Consensus 151 ~~~~~D~ViIDt~G 164 (270)
T PRK06731 151 EEARVDYILIDTAG 164 (270)
T ss_pred hcCCCCEEEEECCC
Confidence 2 234588899874
No 486
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.36 E-value=0.019 Score=49.29 Aligned_cols=25 Identities=44% Similarity=0.492 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+.+.|+|++|+||+||+..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3688999999999999999998875
No 487
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.35 E-value=0.014 Score=50.50 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998875
No 488
>PRK13946 shikimate kinase; Provisional
Probab=95.34 E-value=0.018 Score=49.52 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+.|.++|++|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999986
No 489
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.34 E-value=0.029 Score=48.73 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=27.3
Q ss_pred HHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 165 KVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 165 ~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.+..+...+-++..|.|++|+||||++..+....
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 34444444455789999999999999999988877
No 490
>PRK04182 cytidylate kinase; Provisional
Probab=95.33 E-value=0.016 Score=49.42 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+|.|.|+.|+||||+++.+.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999886
No 491
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.32 E-value=0.058 Score=52.45 Aligned_cols=87 Identities=16% Similarity=0.229 Sum_probs=48.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHHh-hCcc-----cCCC-H-----
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGER-IGWL-----QNRS-F----- 239 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~-l~~~-----~~~~-~----- 239 (397)
.+-..++|.|..|+|||||++.+.... ..+..+...++... ...+..+..+.. +... +..+ .
T Consensus 155 ~~Gq~~~i~G~sG~GKStLl~~i~~~~-----~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~ 229 (434)
T PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKGC-----LAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKY 229 (434)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc-----CCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhH
Confidence 355689999999999999999998654 12334444444443 223333322211 1111 1111 1
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEecCCC
Q 041476 240 -EEKASGIFNLL--SKMKFLLLLDDIWE 264 (397)
Q Consensus 240 -~~~~~~l~~~L--~~kr~LlVlDdv~~ 264 (397)
......+.+++ ++++.||++||+-.
T Consensus 230 ~~~~a~~iAEyFrd~G~~Vll~~DslTr 257 (434)
T PRK08472 230 GAFCAMSVAEYFKNQGLDVLFIMDSVTR 257 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecccchH
Confidence 11123344444 47899999999953
No 492
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.31 E-value=0.14 Score=42.07 Aligned_cols=110 Identities=10% Similarity=0.074 Sum_probs=76.8
Q ss_pred chhhhhhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 041476 6 GIQLTCDALSTGFINCTRRKAAYVSRLEHNLIAIQTQLQKLIEAKNDVMTRVANAEQQQLRRLNKVQGWLSRVEAVEAEV 85 (397)
Q Consensus 6 ~~~a~i~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~i~~ae~~~~~~~~~~~~Wl~~l~~~~~d~ 85 (397)
+.+||++.+++.|...+.+.......++.-++.|...++.|.-++.+++.. +...+..-+.=++++.+...++
T Consensus 6 ~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~-------~~eld~~~~ee~e~L~~~L~~g 78 (147)
T PF05659_consen 6 VGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKL-------NVELDRPRQEEIERLKELLEKG 78 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHH-------hhhcCCchhHHHHHHHHHHHHH
Confidence 367888888888888888878777788888888888888888887775432 1111222355677888888888
Q ss_pred HHHhhhhHHHHHhhhhCCCCCCCcchhhhhhHHHHHHHHHHHHHHh
Q 041476 86 GELTRDSSQEIEKLCLGGYCSKNCKSSYKFGKKVSKKLQLVATLMD 131 (397)
Q Consensus 86 ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 131 (397)
++++..|..-. + .++...++.+++|+++.+.+.....
T Consensus 79 ~~LV~k~sk~~-------r--~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 79 KELVEKCSKVR-------R--WNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHhcccc-------H--HHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 89888763211 1 2455566778888887777766544
No 493
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.30 E-value=0.072 Score=53.95 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||++.++...
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 494
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.30 E-value=0.074 Score=55.88 Aligned_cols=130 Identities=18% Similarity=0.148 Sum_probs=76.5
Q ss_pred hhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----
Q 041476 160 ESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL----- 234 (397)
Q Consensus 160 ~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~----- 234 (397)
....++|++.+. +..++.|.|+.|+||||-.-+++-+.. -.....+=+.=........+-..++++++..
T Consensus 52 ~~~~~~i~~ai~--~~~vvii~getGsGKTTqlP~~lle~g---~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 52 TAVRDEILKAIE--QNQVVIIVGETGSGKTTQLPQFLLEEG---LGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHHH--hCCEEEEeCCCCCChHHHHHHHHHhhh---cccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 456777888775 458999999999999999988877751 1222333333334446677888888888763
Q ss_pred ----------------cCCCHHHHHHHHHH-HhcCCcEEEEEecCCCchhhhhcCCCC----CCCCCCCcEEEEEcCChh
Q 041476 235 ----------------QNRSFEEKASGIFN-LLSKMKFLLLLDDIWERIDLAKMGVPF----PASSRNASKIVFTTRLVD 293 (397)
Q Consensus 235 ----------------~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~~~~l~~~l----~~~~~~gs~IlvTtR~~~ 293 (397)
.-.+..-+.+.++. .+=.+=-.||+|++.+..--.++...+ ++.....-||||+|-.-+
T Consensus 127 GY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld 206 (845)
T COG1643 127 GYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLD 206 (845)
T ss_pred eEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccC
Confidence 01122333333331 111223489999998643322221111 122222489999887655
Q ss_pred h
Q 041476 294 V 294 (397)
Q Consensus 294 v 294 (397)
.
T Consensus 207 ~ 207 (845)
T COG1643 207 A 207 (845)
T ss_pred H
Confidence 4
No 495
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.29 E-value=0.016 Score=48.84 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+|.|.|+.|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998875
No 496
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.29 E-value=0.08 Score=51.36 Aligned_cols=85 Identities=21% Similarity=0.289 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-CCHHHHHHHHHHhhCcc--------cCCCH-H---
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD-MQLERIQQKIGERIGWL--------QNRSF-E--- 240 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~i~~~i~~~l~~~--------~~~~~-~--- 240 (397)
.-..++|+|..|+|||||++.+.... . .+..+...+++. ....++....+.+-+.. .+.+. .
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~---~--~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~ 210 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNA---K--ADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLK 210 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---C--CCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence 45689999999999999999887764 1 122232334433 24455555444331111 11111 1
Q ss_pred --HHHHHHHHHh--cCCcEEEEEecCC
Q 041476 241 --EKASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 241 --~~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
...-.+.+++ +++..||++||+-
T Consensus 211 ~~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (413)
T TIGR03497 211 AAFTATAIAEYFRDQGKDVLLMMDSVT 237 (413)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCcH
Confidence 1122344444 4789999999984
No 497
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.28 E-value=0.018 Score=47.68 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4789999999999999998876654
No 498
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.27 E-value=0.014 Score=52.93 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|.++|++|+||||+|+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999887
No 499
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.26 E-value=0.017 Score=49.26 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++.|+|++|+|||||++.+....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999876
No 500
>PRK14529 adenylate kinase; Provisional
Probab=95.25 E-value=0.049 Score=48.21 Aligned_cols=83 Identities=19% Similarity=0.145 Sum_probs=44.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEE--EeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCC-c
Q 041476 178 IGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWV--VVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKM-K 254 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv--~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~k-r 254 (397)
|.|.|++|+||||+++.+...+ .. .+....-.+ .+..........++++.+- ...+.+-....+.+.|.+. .
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~-~~-~~is~gdllr~~i~~~t~lg~~i~~~i~~G---~lvpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY-DL-AHIESGAIFREHIGGGTELGKKAKEYIDRG---DLVPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CC-CCcccchhhhhhccCCChHHHHHHHHHhcc---CcchHHHHHHHHHHHHhccCC
Confidence 7789999999999999999887 21 223211111 1222223333344444332 2223333344455555331 3
Q ss_pred EEEEEecCCCc
Q 041476 255 FLLLLDDIWER 265 (397)
Q Consensus 255 ~LlVlDdv~~~ 265 (397)
-=+|||++-..
T Consensus 78 ~g~iLDGfPRt 88 (223)
T PRK14529 78 NGWLLDGFPRN 88 (223)
T ss_pred CcEEEeCCCCC
Confidence 45899999643
Done!