Query 041476
Match_columns 397
No_of_seqs 287 out of 2530
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 12:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.6E-37 1.9E-41 307.9 19.4 224 157-397 131-372 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-30 7.7E-35 283.5 22.2 231 153-397 123-373 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.3E-30 4.5E-35 268.0 14.1 211 155-397 129-364 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.4E-28 4.9E-33 249.5 18.4 228 153-397 123-373 (591)
5 2qen_A Walker-type ATPase; unk 99.7 5.9E-16 2E-20 146.0 15.5 193 153-359 11-250 (350)
6 2fna_A Conserved hypothetical 99.7 7.7E-16 2.6E-20 145.5 14.3 191 153-360 12-255 (357)
7 3qfl_A MLA10; coiled-coil, (CC 99.7 5.1E-16 1.8E-20 121.5 10.5 83 9-98 1-84 (115)
8 1w5s_A Origin recognition comp 99.6 2E-15 6.8E-20 145.8 15.3 201 154-355 22-266 (412)
9 2qby_B CDC6 homolog 3, cell di 99.5 5.6E-13 1.9E-17 127.3 18.6 216 154-375 20-271 (384)
10 2qby_A CDC6 homolog 1, cell di 99.5 7.7E-14 2.6E-18 133.2 12.4 220 153-374 19-272 (386)
11 2v1u_A Cell division control p 99.5 3.5E-13 1.2E-17 128.7 15.8 218 154-375 19-277 (387)
12 1fnn_A CDC6P, cell division co 99.5 2.9E-12 1E-16 122.5 19.8 196 154-354 17-246 (389)
13 1njg_A DNA polymerase III subu 99.5 2.3E-12 7.9E-17 114.5 16.8 193 154-358 23-231 (250)
14 2chg_A Replication factor C sm 99.4 2.1E-12 7E-17 113.2 13.5 185 154-356 17-205 (226)
15 1sxj_B Activator 1 37 kDa subu 99.3 3.1E-11 1.1E-15 112.3 12.8 183 154-355 21-210 (323)
16 1iqp_A RFCS; clamp loader, ext 99.1 3.3E-10 1.1E-14 105.5 11.1 183 154-358 25-215 (327)
17 3te6_A Regulatory protein SIR3 99.0 2.1E-09 7.3E-14 99.0 13.1 168 155-323 21-212 (318)
18 2chq_A Replication factor C sm 99.0 4.3E-09 1.5E-13 97.5 13.4 180 154-355 17-204 (319)
19 1jr3_A DNA polymerase III subu 98.9 1.5E-08 5.3E-13 96.0 15.9 190 154-355 16-221 (373)
20 1jbk_A CLPB protein; beta barr 98.9 2E-09 7E-14 91.6 5.9 46 154-199 22-67 (195)
21 1hqc_A RUVB; extended AAA-ATPa 98.8 4.3E-07 1.5E-11 84.2 20.0 192 154-374 12-238 (324)
22 3bos_A Putative DNA replicatio 98.8 8E-09 2.7E-13 91.4 7.7 171 155-355 29-217 (242)
23 2z4s_A Chromosomal replication 98.8 1.7E-08 5.8E-13 97.9 10.1 199 155-373 106-331 (440)
24 1sxj_D Activator 1 41 kDa subu 98.8 3E-08 1E-12 93.2 11.1 192 154-354 37-234 (353)
25 3h4m_A Proteasome-activating n 98.7 6.2E-08 2.1E-12 88.3 12.1 199 154-376 17-260 (285)
26 3pvs_A Replication-associated 98.7 2.3E-07 8E-12 89.9 16.4 176 154-355 26-215 (447)
27 3pfi_A Holliday junction ATP-d 98.7 1.2E-06 4.3E-11 81.7 19.8 172 154-355 29-227 (338)
28 1d2n_A N-ethylmaleimide-sensit 98.7 4.8E-07 1.6E-11 81.9 16.4 197 154-377 33-264 (272)
29 1sxj_E Activator 1 40 kDa subu 98.7 3.8E-08 1.3E-12 92.6 9.4 195 154-355 14-237 (354)
30 2qz4_A Paraplegin; AAA+, SPG7, 98.7 6.7E-07 2.3E-11 80.2 16.4 180 154-354 6-221 (262)
31 1sxj_A Activator 1 95 kDa subu 98.7 1.1E-07 3.6E-12 94.4 11.9 186 154-354 39-252 (516)
32 3u61_B DNA polymerase accessor 98.6 4E-07 1.4E-11 84.6 13.9 181 154-358 26-219 (324)
33 3syl_A Protein CBBX; photosynt 98.6 1.8E-07 6.1E-12 86.2 10.9 152 155-323 32-218 (309)
34 3uk6_A RUVB-like 2; hexameric 98.6 3.8E-07 1.3E-11 86.3 13.2 211 154-373 44-329 (368)
35 1xwi_A SKD1 protein; VPS4B, AA 98.6 4.4E-06 1.5E-10 77.5 19.6 179 154-354 12-222 (322)
36 3d8b_A Fidgetin-like protein 1 98.6 2.9E-06 1E-10 79.9 17.7 179 154-355 84-295 (357)
37 3eie_A Vacuolar protein sortin 98.5 2.7E-06 9.1E-11 79.0 16.8 178 154-354 18-227 (322)
38 3cf0_A Transitional endoplasmi 98.5 3.6E-06 1.2E-10 77.3 17.0 174 154-350 15-223 (301)
39 3b9p_A CG5977-PA, isoform A; A 98.5 5E-06 1.7E-10 76.0 17.9 178 154-354 21-232 (297)
40 2qp9_X Vacuolar protein sortin 98.5 3.6E-06 1.2E-10 79.2 16.6 177 154-353 51-259 (355)
41 1l8q_A Chromosomal replication 98.5 1E-06 3.5E-11 81.8 12.7 165 163-350 23-203 (324)
42 1sxj_C Activator 1 40 kDa subu 98.5 1.3E-06 4.6E-11 81.6 13.3 175 155-354 26-211 (340)
43 3vfd_A Spastin; ATPase, microt 98.5 6.7E-06 2.3E-10 78.4 18.3 179 154-355 115-326 (389)
44 2zan_A Vacuolar protein sortin 98.5 1.7E-05 5.8E-10 76.9 21.1 179 154-353 134-343 (444)
45 1a5t_A Delta prime, HOLB; zinc 98.4 5.3E-06 1.8E-10 77.3 16.3 170 160-354 8-204 (334)
46 2p65_A Hypothetical protein PF 98.4 3.6E-07 1.2E-11 77.1 7.0 46 154-199 22-67 (187)
47 4b4t_J 26S protease regulatory 98.4 3.8E-06 1.3E-10 79.4 13.8 197 155-375 149-390 (405)
48 3pxg_A Negative regulator of g 98.3 3.6E-06 1.2E-10 82.2 13.0 149 155-324 181-340 (468)
49 4b4t_H 26S protease regulatory 98.3 6.2E-06 2.1E-10 79.0 13.8 199 155-377 210-453 (467)
50 4b4t_L 26S protease subunit RP 98.3 4.3E-06 1.5E-10 80.1 12.8 198 155-376 182-424 (437)
51 4b4t_M 26S protease regulatory 98.2 4.2E-06 1.4E-10 80.2 10.6 170 155-348 182-387 (434)
52 3n70_A Transport activator; si 98.2 1.6E-06 5.4E-11 70.5 6.4 45 155-199 2-48 (145)
53 4b4t_I 26S protease regulatory 98.2 9.5E-06 3.2E-10 77.0 12.3 199 155-377 183-426 (437)
54 2r62_A Cell division protease 98.2 1.9E-06 6.5E-11 77.6 7.0 173 154-349 11-219 (268)
55 1qvr_A CLPB protein; coiled co 98.2 4.3E-06 1.5E-10 87.8 10.2 154 154-322 170-345 (854)
56 1r6b_X CLPA protein; AAA+, N-t 98.2 1.9E-05 6.4E-10 82.0 14.5 154 154-322 186-362 (758)
57 2gno_A DNA polymerase III, gam 98.2 1.1E-05 3.9E-10 73.9 11.4 147 158-322 1-152 (305)
58 3hu3_A Transitional endoplasmi 98.1 1.4E-05 4.9E-10 78.1 11.8 177 155-354 205-414 (489)
59 1in4_A RUVB, holliday junction 98.1 9.5E-05 3.3E-09 68.8 16.7 192 154-375 25-251 (334)
60 1lv7_A FTSH; alpha/beta domain 98.1 7.1E-05 2.4E-09 66.8 15.1 176 154-352 12-222 (257)
61 3ec2_A DNA replication protein 98.1 1.9E-06 6.6E-11 72.7 4.4 116 160-292 20-143 (180)
62 2ce7_A Cell division protein F 98.1 2.3E-05 7.8E-10 76.2 12.4 172 154-348 16-221 (476)
63 4b4t_K 26S protease regulatory 98.1 1.6E-05 5.5E-10 76.0 10.9 171 154-348 172-379 (428)
64 3pxi_A Negative regulator of g 98.1 2.9E-05 1E-09 80.5 13.7 151 154-323 180-339 (758)
65 1ofh_A ATP-dependent HSL prote 98.0 5E-05 1.7E-09 69.6 12.7 46 154-199 15-74 (310)
66 4fcw_A Chaperone protein CLPB; 98.0 1.4E-05 4.7E-10 73.5 8.5 60 154-216 17-85 (311)
67 2w58_A DNAI, primosome compone 97.9 2.5E-05 8.4E-10 67.0 8.6 114 162-292 37-159 (202)
68 2bjv_A PSP operon transcriptio 97.9 2E-05 6.8E-10 70.8 8.1 46 154-199 6-53 (265)
69 3co5_A Putative two-component 97.9 4.6E-06 1.6E-10 67.6 3.5 46 154-199 4-51 (143)
70 2c9o_A RUVB-like 1; hexameric 97.9 8.8E-05 3E-09 72.1 13.0 46 154-199 37-87 (456)
71 1ojl_A Transcriptional regulat 97.9 2.4E-05 8.3E-10 71.8 7.9 46 154-199 2-49 (304)
72 2kjq_A DNAA-related protein; s 97.8 1.6E-05 5.6E-10 64.8 4.5 39 174-215 35-73 (149)
73 3cf2_A TER ATPase, transitiona 97.7 0.00031 1.1E-08 72.3 13.7 173 155-350 205-409 (806)
74 3pxi_A Negative regulator of g 97.7 2.4E-05 8.3E-10 81.1 5.2 148 154-322 491-675 (758)
75 3m6a_A ATP-dependent protease 97.7 0.00028 9.6E-09 70.0 12.6 157 155-322 82-266 (543)
76 2dhr_A FTSH; AAA+ protein, hex 97.7 0.00066 2.2E-08 66.3 14.3 167 154-348 31-236 (499)
77 2x8a_A Nuclear valosin-contain 97.6 0.0027 9.3E-08 57.1 17.2 147 154-323 10-192 (274)
78 1ixz_A ATP-dependent metallopr 97.5 0.0014 4.6E-08 58.2 13.2 170 154-348 16-221 (254)
79 1ypw_A Transitional endoplasmi 97.5 0.00079 2.7E-08 70.0 13.0 170 154-348 204-407 (806)
80 1iy2_A ATP-dependent metallopr 97.5 0.0017 5.8E-08 58.5 13.8 170 154-348 40-245 (278)
81 2cvh_A DNA repair and recombin 97.5 0.00039 1.3E-08 60.1 9.0 84 174-264 19-116 (220)
82 3hr8_A Protein RECA; alpha and 97.4 0.00044 1.5E-08 64.5 9.1 83 174-264 60-150 (356)
83 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.0001 3.6E-09 67.3 4.5 69 175-264 123-193 (331)
84 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00039 1.3E-08 72.1 8.0 46 154-199 458-512 (758)
85 3t15_A Ribulose bisphosphate c 97.3 0.00046 1.6E-08 62.8 7.3 26 174-199 35-60 (293)
86 2zr9_A Protein RECA, recombina 97.3 0.00087 3E-08 62.5 9.2 83 174-264 60-150 (349)
87 1qvr_A CLPB protein; coiled co 97.3 0.00042 1.4E-08 72.7 7.6 45 155-199 559-612 (854)
88 1xp8_A RECA protein, recombina 97.2 0.0011 3.7E-08 62.2 9.4 82 174-263 73-162 (366)
89 2z43_A DNA repair and recombin 97.2 0.0023 7.8E-08 59.1 11.3 90 174-264 106-214 (324)
90 1n0w_A DNA repair protein RAD5 97.2 0.0028 9.7E-08 55.4 11.2 89 174-264 23-130 (243)
91 3io5_A Recombination and repai 97.2 0.0016 5.4E-08 59.3 9.4 83 176-264 29-122 (333)
92 1u94_A RECA protein, recombina 97.2 0.001 3.6E-08 62.1 8.5 82 174-263 62-151 (356)
93 1jr3_D DNA polymerase III, del 97.1 0.0042 1.4E-07 57.7 12.1 165 166-354 9-184 (343)
94 2qgz_A Helicase loader, putati 97.1 0.00091 3.1E-08 61.3 7.1 39 161-199 135-176 (308)
95 1v5w_A DMC1, meiotic recombina 97.1 0.0027 9.3E-08 59.1 10.4 90 174-264 121-230 (343)
96 3dm5_A SRP54, signal recogniti 97.0 0.0048 1.7E-07 59.0 11.0 26 174-199 99-124 (443)
97 2i1q_A DNA repair and recombin 96.9 0.0043 1.5E-07 57.1 10.2 89 174-263 97-214 (322)
98 1g5t_A COB(I)alamin adenosyltr 96.9 0.00095 3.3E-08 56.4 5.1 116 175-294 28-165 (196)
99 4a74_A DNA repair and recombin 96.9 0.0054 1.9E-07 53.1 10.2 46 174-219 24-72 (231)
100 1pzn_A RAD51, DNA repair and r 96.9 0.0042 1.5E-07 57.9 9.6 89 174-264 130-242 (349)
101 3lda_A DNA repair protein RAD5 96.9 0.0078 2.7E-07 57.1 11.5 89 174-263 177-283 (400)
102 3ice_A Transcription terminati 96.8 0.0033 1.1E-07 58.7 8.2 94 165-263 163-271 (422)
103 2b8t_A Thymidine kinase; deoxy 96.8 0.00054 1.9E-08 59.5 2.7 108 174-291 11-125 (223)
104 1rz3_A Hypothetical protein rb 96.7 0.0016 5.5E-08 55.6 5.4 41 159-199 3-46 (201)
105 3kl4_A SRP54, signal recogniti 96.7 0.0092 3.1E-07 57.0 11.1 26 174-199 96-121 (433)
106 1sky_E F1-ATPase, F1-ATP synth 96.7 0.012 4.1E-07 56.6 11.2 96 166-263 141-255 (473)
107 2xxa_A Signal recognition part 96.6 0.012 4E-07 56.5 11.1 26 174-199 99-124 (433)
108 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0062 2.1E-07 52.7 8.4 111 175-292 23-168 (235)
109 3bh0_A DNAB-like replicative h 96.6 0.01 3.4E-07 54.5 10.1 51 174-229 67-117 (315)
110 2px0_A Flagellar biosynthesis 96.6 0.008 2.7E-07 54.6 9.2 85 174-262 104-191 (296)
111 2r44_A Uncharacterized protein 96.6 0.0015 5.1E-08 60.4 4.1 151 154-324 27-200 (331)
112 3sr0_A Adenylate kinase; phosp 96.5 0.0074 2.5E-07 51.7 8.2 74 177-265 2-86 (206)
113 1qhx_A CPT, protein (chloramph 96.5 0.0015 5E-08 54.4 3.6 24 176-199 4-27 (178)
114 3kb2_A SPBC2 prophage-derived 96.5 0.0014 4.9E-08 54.0 3.5 24 176-199 2-25 (173)
115 3c8u_A Fructokinase; YP_612366 96.5 0.002 6.9E-08 55.2 4.5 38 162-199 7-46 (208)
116 3cf2_A TER ATPase, transitiona 96.5 0.0038 1.3E-07 64.3 7.2 170 154-347 477-682 (806)
117 2ck3_D ATP synthase subunit be 96.5 0.031 1E-06 53.7 12.6 97 165-263 142-263 (482)
118 1fx0_B ATP synthase beta chain 96.4 0.016 5.4E-07 55.9 10.5 96 166-263 155-276 (498)
119 3lw7_A Adenylate kinase relate 96.4 0.0017 5.8E-08 53.6 3.4 23 176-199 2-24 (179)
120 3nbx_X ATPase RAVA; AAA+ ATPas 96.4 0.0026 8.9E-08 62.1 5.1 44 154-199 22-65 (500)
121 2ffh_A Protein (FFH); SRP54, s 96.4 0.015 5E-07 55.6 10.1 25 175-199 98-122 (425)
122 1j8m_F SRP54, signal recogniti 96.4 0.0088 3E-07 54.3 8.3 86 175-263 98-190 (297)
123 3jvv_A Twitching mobility prot 96.4 0.0034 1.2E-07 58.6 5.6 114 173-295 121-234 (356)
124 3hws_A ATP-dependent CLP prote 96.4 0.0031 1E-07 59.2 5.3 45 155-199 16-75 (363)
125 1vma_A Cell division protein F 96.4 0.0091 3.1E-07 54.4 8.2 86 174-263 103-196 (306)
126 3vaa_A Shikimate kinase, SK; s 96.4 0.0022 7.4E-08 54.6 3.7 26 174-199 24-49 (199)
127 1ly1_A Polynucleotide kinase; 96.4 0.0022 7.5E-08 53.3 3.6 22 176-197 3-24 (181)
128 3uie_A Adenylyl-sulfate kinase 96.3 0.0028 9.4E-08 54.0 4.2 28 172-199 22-49 (200)
129 1g8p_A Magnesium-chelatase 38 96.3 0.0015 5.1E-08 60.7 2.8 46 154-199 24-69 (350)
130 1kgd_A CASK, peripheral plasma 96.3 0.0021 7.3E-08 53.7 3.4 24 176-199 6-29 (180)
131 3tqc_A Pantothenate kinase; bi 96.3 0.023 7.8E-07 52.1 10.5 96 157-253 70-171 (321)
132 1zp6_A Hypothetical protein AT 96.3 0.0025 8.4E-08 53.7 3.7 26 174-199 8-33 (191)
133 3trf_A Shikimate kinase, SK; a 96.3 0.0024 8.3E-08 53.4 3.6 25 175-199 5-29 (185)
134 1kag_A SKI, shikimate kinase I 96.3 0.0021 7E-08 53.2 3.1 24 176-199 5-28 (173)
135 1ex7_A Guanylate kinase; subst 96.3 0.0018 6.2E-08 54.5 2.7 24 176-199 2-25 (186)
136 2dr3_A UPF0273 protein PH0284; 96.3 0.016 5.3E-07 50.7 9.0 40 174-216 22-61 (247)
137 1um8_A ATP-dependent CLP prote 96.3 0.0042 1.4E-07 58.5 5.5 46 154-199 21-96 (376)
138 4eun_A Thermoresistant glucoki 96.2 0.0028 9.6E-08 54.0 3.7 27 173-199 27-53 (200)
139 1nks_A Adenylate kinase; therm 96.2 0.0027 9.1E-08 53.4 3.5 24 176-199 2-25 (194)
140 3t61_A Gluconokinase; PSI-biol 96.2 0.0024 8E-08 54.5 3.1 25 175-199 18-42 (202)
141 2rhm_A Putative kinase; P-loop 96.2 0.003 1E-07 53.1 3.8 25 175-199 5-29 (193)
142 2hf9_A Probable hydrogenase ni 96.2 0.0051 1.7E-07 53.2 5.2 38 162-199 25-62 (226)
143 1kht_A Adenylate kinase; phosp 96.2 0.003 1E-07 53.0 3.6 24 176-199 4-27 (192)
144 3iij_A Coilin-interacting nucl 96.2 0.0028 9.7E-08 52.8 3.3 25 175-199 11-35 (180)
145 3cmu_A Protein RECA, recombina 96.2 0.0095 3.2E-07 66.8 8.2 82 174-263 1426-1515(2050)
146 3tau_A Guanylate kinase, GMP k 96.1 0.0035 1.2E-07 53.8 3.7 26 174-199 7-32 (208)
147 2plr_A DTMP kinase, probable t 96.1 0.0091 3.1E-07 50.9 6.4 25 175-199 4-28 (213)
148 4a1f_A DNAB helicase, replicat 96.1 0.068 2.3E-06 49.3 12.6 50 174-228 45-94 (338)
149 2r6a_A DNAB helicase, replicat 96.1 0.17 5.8E-06 48.7 16.0 50 174-227 202-251 (454)
150 2qor_A Guanylate kinase; phosp 96.1 0.0031 1.1E-07 53.9 3.3 26 174-199 11-36 (204)
151 2wsm_A Hydrogenase expression/ 96.1 0.005 1.7E-07 53.0 4.6 41 159-199 14-54 (221)
152 3tr0_A Guanylate kinase, GMP k 96.1 0.0033 1.1E-07 53.5 3.4 25 175-199 7-31 (205)
153 3umf_A Adenylate kinase; rossm 96.1 0.0039 1.3E-07 53.8 3.8 26 174-199 28-53 (217)
154 3a00_A Guanylate kinase, GMP k 96.1 0.0031 1E-07 53.0 3.1 24 176-199 2-25 (186)
155 1knq_A Gluconate kinase; ALFA/ 96.1 0.0041 1.4E-07 51.5 3.8 25 175-199 8-32 (175)
156 3e70_C DPA, signal recognition 96.0 0.027 9.3E-07 51.8 9.6 27 173-199 127-153 (328)
157 1gvn_B Zeta; postsegregational 96.0 0.0066 2.2E-07 54.9 5.3 26 174-199 32-57 (287)
158 2c95_A Adenylate kinase 1; tra 96.0 0.004 1.4E-07 52.5 3.7 26 174-199 8-33 (196)
159 1via_A Shikimate kinase; struc 96.0 0.0033 1.1E-07 52.2 3.1 24 176-199 5-28 (175)
160 2yvu_A Probable adenylyl-sulfa 96.0 0.0039 1.3E-07 52.3 3.5 26 174-199 12-37 (186)
161 1zuh_A Shikimate kinase; alpha 96.0 0.0039 1.3E-07 51.3 3.5 26 174-199 6-31 (168)
162 1tev_A UMP-CMP kinase; ploop, 96.0 0.0041 1.4E-07 52.3 3.7 25 175-199 3-27 (196)
163 1odf_A YGR205W, hypothetical 3 96.0 0.0072 2.5E-07 54.7 5.4 79 174-252 30-117 (290)
164 2ze6_A Isopentenyl transferase 96.0 0.004 1.4E-07 55.3 3.6 24 176-199 2-25 (253)
165 2jaq_A Deoxyguanosine kinase; 96.0 0.004 1.4E-07 52.8 3.5 23 177-199 2-24 (205)
166 2bdt_A BH3686; alpha-beta prot 96.0 0.0043 1.5E-07 52.1 3.5 23 176-198 3-25 (189)
167 2j41_A Guanylate kinase; GMP, 96.0 0.0045 1.6E-07 52.6 3.7 25 175-199 6-30 (207)
168 4gp7_A Metallophosphoesterase; 96.0 0.0039 1.3E-07 51.7 3.2 22 175-196 9-30 (171)
169 1ye8_A Protein THEP1, hypothet 96.0 0.0043 1.5E-07 51.9 3.4 23 177-199 2-24 (178)
170 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0084 2.9E-07 55.5 5.6 42 158-199 3-48 (359)
171 1g41_A Heat shock protein HSLU 95.9 0.0059 2E-07 58.5 4.7 46 154-199 15-74 (444)
172 3asz_A Uridine kinase; cytidin 95.9 0.0047 1.6E-07 52.9 3.7 26 174-199 5-30 (211)
173 2iyv_A Shikimate kinase, SK; t 95.9 0.0037 1.3E-07 52.2 2.9 24 176-199 3-26 (184)
174 1lvg_A Guanylate kinase, GMP k 95.9 0.0038 1.3E-07 53.1 3.0 24 176-199 5-28 (198)
175 1ukz_A Uridylate kinase; trans 95.9 0.0051 1.7E-07 52.3 3.8 26 174-199 14-39 (203)
176 1y63_A LMAJ004144AAA protein; 95.9 0.0051 1.7E-07 51.6 3.7 25 174-198 9-33 (184)
177 1cke_A CK, MSSA, protein (cyti 95.9 0.0045 1.5E-07 53.6 3.5 24 176-199 6-29 (227)
178 2bbw_A Adenylate kinase 4, AK4 95.9 0.0049 1.7E-07 54.3 3.7 26 174-199 26-51 (246)
179 2bwj_A Adenylate kinase 5; pho 95.9 0.0049 1.7E-07 52.1 3.5 25 175-199 12-36 (199)
180 1uf9_A TT1252 protein; P-loop, 95.9 0.0057 1.9E-07 51.8 3.9 26 173-198 6-31 (203)
181 3ney_A 55 kDa erythrocyte memb 95.9 0.0054 1.9E-07 52.0 3.6 26 174-199 18-43 (197)
182 3cm0_A Adenylate kinase; ATP-b 95.9 0.0053 1.8E-07 51.3 3.6 24 176-199 5-28 (186)
183 1e6c_A Shikimate kinase; phosp 95.9 0.0044 1.5E-07 51.1 3.1 24 176-199 3-26 (173)
184 1ls1_A Signal recognition part 95.8 0.039 1.3E-06 50.0 9.5 85 175-262 98-189 (295)
185 2vli_A Antibiotic resistance p 95.8 0.0035 1.2E-07 52.2 2.4 25 175-199 5-29 (183)
186 3hjn_A DTMP kinase, thymidylat 95.8 0.023 7.7E-07 48.2 7.4 82 177-262 2-90 (197)
187 1qf9_A UMP/CMP kinase, protein 95.8 0.0059 2E-07 51.2 3.7 25 175-199 6-30 (194)
188 2yhs_A FTSY, cell division pro 95.8 0.048 1.6E-06 52.8 10.3 26 174-199 292-317 (503)
189 2if2_A Dephospho-COA kinase; a 95.8 0.0054 1.9E-07 52.2 3.3 22 176-197 2-23 (204)
190 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0063 2.1E-07 54.2 3.8 25 175-199 4-28 (260)
191 2wwf_A Thymidilate kinase, put 95.7 0.0064 2.2E-07 51.9 3.7 25 175-199 10-34 (212)
192 2cdn_A Adenylate kinase; phosp 95.7 0.0065 2.2E-07 51.6 3.7 25 175-199 20-44 (201)
193 2qt1_A Nicotinamide riboside k 95.7 0.0068 2.3E-07 51.7 3.8 26 174-199 20-45 (207)
194 1znw_A Guanylate kinase, GMP k 95.7 0.0058 2E-07 52.3 3.3 26 174-199 19-44 (207)
195 1jjv_A Dephospho-COA kinase; P 95.7 0.0058 2E-07 52.1 3.3 22 176-197 3-24 (206)
196 1nn5_A Similar to deoxythymidy 95.7 0.0066 2.3E-07 51.9 3.7 25 175-199 9-33 (215)
197 2p5t_B PEZT; postsegregational 95.7 0.0083 2.8E-07 53.1 4.4 26 174-199 31-56 (253)
198 2pbr_A DTMP kinase, thymidylat 95.7 0.0064 2.2E-07 51.1 3.5 23 177-199 2-24 (195)
199 3tlx_A Adenylate kinase 2; str 95.7 0.012 4.1E-07 51.7 5.4 26 174-199 28-53 (243)
200 1uj2_A Uridine-cytidine kinase 95.7 0.0071 2.4E-07 53.5 3.9 27 173-199 20-46 (252)
201 2pt5_A Shikimate kinase, SK; a 95.7 0.0066 2.3E-07 49.8 3.5 23 177-199 2-24 (168)
202 1zd8_A GTP:AMP phosphotransfer 95.7 0.0065 2.2E-07 52.7 3.5 25 175-199 7-31 (227)
203 2z0h_A DTMP kinase, thymidylat 95.7 0.014 4.7E-07 49.1 5.5 23 177-199 2-24 (197)
204 2j37_W Signal recognition part 95.6 0.085 2.9E-06 51.4 11.6 26 174-199 100-125 (504)
205 1z6g_A Guanylate kinase; struc 95.6 0.0059 2E-07 52.8 3.0 26 174-199 22-47 (218)
206 2v54_A DTMP kinase, thymidylat 95.6 0.008 2.7E-07 51.0 3.7 25 175-199 4-28 (204)
207 3fb4_A Adenylate kinase; psych 95.6 0.0073 2.5E-07 51.9 3.5 23 177-199 2-24 (216)
208 1aky_A Adenylate kinase; ATP:A 95.6 0.0081 2.8E-07 51.8 3.7 25 175-199 4-28 (220)
209 1zak_A Adenylate kinase; ATP:A 95.5 0.007 2.4E-07 52.3 3.3 25 175-199 5-29 (222)
210 1xjc_A MOBB protein homolog; s 95.5 0.0085 2.9E-07 49.5 3.6 26 174-199 3-28 (169)
211 3l0o_A Transcription terminati 95.5 0.033 1.1E-06 52.0 7.8 53 164-217 163-216 (427)
212 2jeo_A Uridine-cytidine kinase 95.5 0.0089 3E-07 52.6 4.0 26 174-199 24-49 (245)
213 4e22_A Cytidylate kinase; P-lo 95.5 0.0075 2.6E-07 53.4 3.5 26 174-199 26-51 (252)
214 1s96_A Guanylate kinase, GMP k 95.5 0.0078 2.7E-07 52.1 3.4 26 174-199 15-40 (219)
215 3vr4_D V-type sodium ATPase su 95.5 0.022 7.5E-07 54.4 6.7 97 166-263 141-258 (465)
216 3aez_A Pantothenate kinase; tr 95.5 0.0088 3E-07 54.7 3.9 26 174-199 89-114 (312)
217 1htw_A HI0065; nucleotide-bind 95.5 0.0085 2.9E-07 48.9 3.4 26 174-199 32-57 (158)
218 1tue_A Replication protein E1; 95.5 0.012 4E-07 50.1 4.3 37 163-199 45-82 (212)
219 3oaa_A ATP synthase subunit al 95.5 0.061 2.1E-06 51.8 9.8 94 166-263 152-264 (513)
220 2pt7_A CAG-ALFA; ATPase, prote 95.5 0.017 5.9E-07 53.3 5.9 106 176-294 172-277 (330)
221 3dl0_A Adenylate kinase; phosp 95.5 0.0081 2.8E-07 51.6 3.5 23 177-199 2-24 (216)
222 1sq5_A Pantothenate kinase; P- 95.5 0.042 1.4E-06 50.1 8.4 26 174-199 79-104 (308)
223 1gtv_A TMK, thymidylate kinase 95.5 0.0043 1.5E-07 53.1 1.6 23 177-199 2-24 (214)
224 3k1j_A LON protease, ATP-depen 95.5 0.024 8.3E-07 56.9 7.3 43 155-199 42-84 (604)
225 1rj9_A FTSY, signal recognitio 95.4 0.0093 3.2E-07 54.4 3.7 26 174-199 101-126 (304)
226 1m7g_A Adenylylsulfate kinase; 95.4 0.014 4.7E-07 50.0 4.5 27 173-199 23-49 (211)
227 2grj_A Dephospho-COA kinase; T 95.4 0.0098 3.3E-07 50.3 3.5 26 174-199 11-36 (192)
228 1q57_A DNA primase/helicase; d 95.4 0.071 2.4E-06 52.2 10.1 50 174-227 241-290 (503)
229 2r9v_A ATP synthase subunit al 95.4 0.04 1.4E-06 53.3 8.0 94 165-263 164-277 (515)
230 3cmu_A Protein RECA, recombina 95.3 0.035 1.2E-06 62.3 8.5 82 174-263 382-471 (2050)
231 2ehv_A Hypothetical protein PH 95.3 0.0095 3.2E-07 52.2 3.3 24 174-197 29-52 (251)
232 2pez_A Bifunctional 3'-phospho 95.3 0.012 4.1E-07 48.9 3.8 25 175-199 5-29 (179)
233 2qe7_A ATP synthase subunit al 95.2 0.046 1.6E-06 52.7 8.0 93 166-263 152-264 (502)
234 2i3b_A HCR-ntpase, human cance 95.2 0.0097 3.3E-07 50.2 3.0 24 176-199 2-25 (189)
235 3cmw_A Protein RECA, recombina 95.2 0.034 1.2E-06 61.6 8.0 83 174-264 382-472 (1706)
236 3r20_A Cytidylate kinase; stru 95.2 0.012 4.1E-07 51.3 3.6 25 175-199 9-33 (233)
237 1vht_A Dephospho-COA kinase; s 95.2 0.013 4.5E-07 50.4 3.8 23 175-197 4-26 (218)
238 2q6t_A DNAB replication FORK h 95.2 0.087 3E-06 50.7 9.9 51 174-228 199-249 (444)
239 3tif_A Uncharacterized ABC tra 95.2 0.0099 3.4E-07 52.0 3.0 26 174-199 30-55 (235)
240 2onk_A Molybdate/tungstate ABC 95.2 0.012 4.1E-07 51.7 3.5 26 173-199 23-48 (240)
241 3lnc_A Guanylate kinase, GMP k 95.1 0.0075 2.5E-07 52.5 2.1 25 175-199 27-52 (231)
242 3ake_A Cytidylate kinase; CMP 95.1 0.012 4.3E-07 49.9 3.5 24 176-199 3-26 (208)
243 1np6_A Molybdopterin-guanine d 95.1 0.014 4.7E-07 48.5 3.6 25 175-199 6-30 (174)
244 3e1s_A Exodeoxyribonuclease V, 95.1 0.02 6.9E-07 57.0 5.4 36 162-199 193-228 (574)
245 4eaq_A DTMP kinase, thymidylat 95.1 0.027 9.4E-07 48.9 5.7 26 174-199 25-50 (229)
246 2pcj_A ABC transporter, lipopr 95.1 0.011 3.6E-07 51.4 2.9 26 174-199 29-54 (224)
247 2xb4_A Adenylate kinase; ATP-b 95.1 0.013 4.4E-07 50.8 3.5 23 177-199 2-24 (223)
248 1e4v_A Adenylate kinase; trans 95.1 0.013 4.4E-07 50.3 3.4 23 177-199 2-24 (214)
249 3be4_A Adenylate kinase; malar 95.1 0.013 4.4E-07 50.5 3.4 24 176-199 6-29 (217)
250 3nwj_A ATSK2; P loop, shikimat 95.1 0.012 4E-07 52.1 3.1 25 175-199 48-72 (250)
251 2f1r_A Molybdopterin-guanine d 95.0 0.0076 2.6E-07 50.0 1.8 24 176-199 3-26 (171)
252 1ak2_A Adenylate kinase isoenz 95.0 0.015 5E-07 50.7 3.7 25 175-199 16-40 (233)
253 3b9q_A Chloroplast SRP recepto 95.0 0.015 5.1E-07 52.9 3.7 26 174-199 99-124 (302)
254 3d3q_A TRNA delta(2)-isopenten 95.0 0.015 5.1E-07 53.6 3.6 24 176-199 8-31 (340)
255 3upu_A ATP-dependent DNA helic 95.0 0.034 1.2E-06 53.7 6.5 38 161-199 32-69 (459)
256 3exa_A TRNA delta(2)-isopenten 95.0 0.017 5.8E-07 52.5 3.9 25 175-199 3-27 (322)
257 3cmw_A Protein RECA, recombina 95.0 0.042 1.4E-06 61.0 7.7 82 174-263 1430-1519(1706)
258 3b85_A Phosphate starvation-in 94.9 0.011 3.6E-07 50.8 2.5 23 176-198 23-45 (208)
259 2f6r_A COA synthase, bifunctio 94.9 0.015 5.2E-07 52.3 3.6 23 174-196 74-96 (281)
260 1cr0_A DNA primase/helicase; R 94.9 0.035 1.2E-06 50.1 6.1 40 174-215 34-73 (296)
261 2cbz_A Multidrug resistance-as 94.9 0.013 4.5E-07 51.3 3.0 26 174-199 30-55 (237)
262 1b0u_A Histidine permease; ABC 94.9 0.013 4.5E-07 52.2 3.0 26 174-199 31-56 (262)
263 3gqb_B V-type ATP synthase bet 94.9 0.026 8.7E-07 53.9 5.1 97 166-263 137-261 (464)
264 3crm_A TRNA delta(2)-isopenten 94.9 0.016 5.5E-07 53.1 3.6 24 176-199 6-29 (323)
265 3gfo_A Cobalt import ATP-bindi 94.9 0.013 4.5E-07 52.5 3.0 26 174-199 33-58 (275)
266 3a8t_A Adenylate isopentenyltr 94.9 0.017 5.9E-07 53.1 3.7 26 174-199 39-64 (339)
267 2d2e_A SUFC protein; ABC-ATPas 94.8 0.016 5.4E-07 51.2 3.3 25 174-198 28-52 (250)
268 1ji0_A ABC transporter; ATP bi 94.8 0.014 4.9E-07 51.2 3.0 26 174-199 31-56 (240)
269 1g6h_A High-affinity branched- 94.8 0.014 4.9E-07 51.7 3.0 26 174-199 32-57 (257)
270 2c61_A A-type ATP synthase non 94.8 0.062 2.1E-06 51.5 7.5 97 166-262 142-258 (469)
271 3mfy_A V-type ATP synthase alp 94.8 0.076 2.6E-06 51.8 8.1 59 165-228 216-276 (588)
272 3fwy_A Light-independent proto 94.8 0.018 6.3E-07 52.7 3.7 40 173-215 46-85 (314)
273 4g1u_C Hemin import ATP-bindin 94.8 0.015 5E-07 52.0 3.0 26 174-199 36-61 (266)
274 3p32_A Probable GTPase RV1496/ 94.8 0.036 1.2E-06 51.7 5.8 37 163-199 65-103 (355)
275 1sgw_A Putative ABC transporte 94.8 0.013 4.5E-07 50.4 2.5 26 174-199 34-59 (214)
276 2pze_A Cystic fibrosis transme 94.7 0.015 5.3E-07 50.6 3.0 26 174-199 33-58 (229)
277 2olj_A Amino acid ABC transpor 94.7 0.015 5.2E-07 51.7 3.0 26 174-199 49-74 (263)
278 1ltq_A Polynucleotide kinase; 94.7 0.018 6.3E-07 52.1 3.6 23 176-198 3-25 (301)
279 2zu0_C Probable ATP-dependent 94.7 0.017 5.8E-07 51.6 3.3 25 174-198 45-69 (267)
280 1mv5_A LMRA, multidrug resista 94.7 0.016 5.5E-07 50.9 3.1 26 174-199 27-52 (243)
281 1fx0_A ATP synthase alpha chai 94.7 0.025 8.6E-07 54.6 4.6 85 174-263 162-265 (507)
282 2ff7_A Alpha-hemolysin translo 94.7 0.016 5.3E-07 51.2 3.0 26 174-199 34-59 (247)
283 1oix_A RAS-related protein RAB 94.7 0.019 6.5E-07 48.2 3.3 25 175-199 29-53 (191)
284 2og2_A Putative signal recogni 94.6 0.021 7.2E-07 53.2 3.8 26 174-199 156-181 (359)
285 1vpl_A ABC transporter, ATP-bi 94.6 0.016 5.6E-07 51.3 3.0 26 174-199 40-65 (256)
286 3foz_A TRNA delta(2)-isopenten 94.6 0.021 7.1E-07 51.8 3.7 25 175-199 10-34 (316)
287 3v9p_A DTMP kinase, thymidylat 94.6 0.036 1.2E-06 48.1 5.1 25 175-199 25-49 (227)
288 2ck3_A ATP synthase subunit al 94.6 0.08 2.7E-06 51.2 7.9 99 165-263 151-272 (510)
289 3lv8_A DTMP kinase, thymidylat 94.6 0.052 1.8E-06 47.4 6.1 52 175-228 27-78 (236)
290 2eyu_A Twitching motility prot 94.6 0.021 7.1E-07 50.8 3.6 110 173-294 23-135 (261)
291 4edh_A DTMP kinase, thymidylat 94.6 0.063 2.2E-06 46.1 6.5 25 175-199 6-30 (213)
292 1a7j_A Phosphoribulokinase; tr 94.6 0.011 3.6E-07 53.6 1.6 26 174-199 4-29 (290)
293 3vr4_A V-type sodium ATPase ca 94.6 0.16 5.4E-06 49.8 9.9 58 165-227 221-280 (600)
294 2ixe_A Antigen peptide transpo 94.6 0.017 5.9E-07 51.7 3.0 26 174-199 44-69 (271)
295 3f9v_A Minichromosome maintena 94.6 0.011 3.7E-07 59.2 1.8 45 155-199 296-351 (595)
296 2ghi_A Transport protein; mult 94.6 0.017 6E-07 51.3 3.0 26 174-199 45-70 (260)
297 2qi9_C Vitamin B12 import ATP- 94.6 0.018 6.1E-07 50.9 3.0 26 174-199 25-50 (249)
298 2f9l_A RAB11B, member RAS onco 94.5 0.02 6.9E-07 48.3 3.2 24 176-199 6-29 (199)
299 3zvl_A Bifunctional polynucleo 94.5 0.021 7.2E-07 54.5 3.6 27 173-199 256-282 (416)
300 2yz2_A Putative ABC transporte 94.5 0.018 6.3E-07 51.3 3.0 26 174-199 32-57 (266)
301 2dyk_A GTP-binding protein; GT 94.5 0.025 8.6E-07 45.4 3.6 24 176-199 2-25 (161)
302 1p9r_A General secretion pathw 94.5 0.072 2.5E-06 50.7 7.2 29 171-199 163-191 (418)
303 2ihy_A ABC transporter, ATP-bi 94.5 0.019 6.4E-07 51.6 3.0 26 174-199 46-71 (279)
304 2nq2_C Hypothetical ABC transp 94.5 0.019 6.4E-07 50.9 2.9 26 174-199 30-55 (253)
305 2zej_A Dardarin, leucine-rich 94.5 0.017 5.9E-07 48.0 2.6 22 177-198 4-25 (184)
306 2v9p_A Replication protein E1; 94.4 0.022 7.5E-07 51.8 3.4 27 173-199 124-150 (305)
307 2wji_A Ferrous iron transport 94.4 0.023 7.8E-07 46.3 3.2 23 176-198 4-26 (165)
308 2qmh_A HPR kinase/phosphorylas 94.4 0.023 8E-07 48.0 3.2 25 175-199 34-58 (205)
309 3sop_A Neuronal-specific septi 94.4 0.023 7.7E-07 50.8 3.3 23 177-199 4-26 (270)
310 1nlf_A Regulatory protein REPA 94.4 0.022 7.5E-07 51.1 3.2 26 174-199 29-54 (279)
311 4tmk_A Protein (thymidylate ki 94.4 0.063 2.2E-06 46.0 6.0 52 176-229 4-55 (213)
312 2ocp_A DGK, deoxyguanosine kin 94.3 0.028 9.6E-07 49.2 3.7 25 175-199 2-26 (241)
313 1yrb_A ATP(GTP)binding protein 94.3 0.03 1E-06 49.5 3.9 26 174-199 13-38 (262)
314 2ce2_X GTPase HRAS; signaling 94.3 0.025 8.7E-07 45.5 3.1 23 177-199 5-27 (166)
315 1zu4_A FTSY; GTPase, signal re 94.2 0.031 1.1E-06 51.3 3.9 26 174-199 104-129 (320)
316 3bgw_A DNAB-like replicative h 94.2 0.11 3.6E-06 50.0 7.8 39 174-215 196-234 (444)
317 1q3t_A Cytidylate kinase; nucl 94.2 0.031 1.1E-06 48.7 3.8 26 174-199 15-40 (236)
318 1z2a_A RAS-related protein RAB 94.2 0.028 9.4E-07 45.5 3.1 24 176-199 6-29 (168)
319 2pjz_A Hypothetical protein ST 94.1 0.025 8.4E-07 50.4 3.0 24 175-198 30-53 (263)
320 3fvq_A Fe(3+) IONS import ATP- 94.1 0.026 9E-07 52.5 3.3 26 174-199 29-54 (359)
321 4hlc_A DTMP kinase, thymidylat 94.1 0.08 2.7E-06 45.1 6.1 24 176-199 3-26 (205)
322 2vp4_A Deoxynucleoside kinase; 94.1 0.022 7.6E-07 49.5 2.6 25 174-198 19-43 (230)
323 2wjg_A FEOB, ferrous iron tran 94.1 0.033 1.1E-06 46.2 3.5 23 176-198 8-30 (188)
324 3iqw_A Tail-anchored protein t 94.1 0.092 3.1E-06 48.4 6.8 30 170-199 11-40 (334)
325 1zj6_A ADP-ribosylation factor 94.1 0.059 2E-06 44.7 5.1 34 164-198 6-39 (187)
326 1svm_A Large T antigen; AAA+ f 94.1 0.033 1.1E-06 52.3 3.8 27 173-199 167-193 (377)
327 3ld9_A DTMP kinase, thymidylat 94.0 0.066 2.2E-06 46.3 5.4 27 173-199 19-45 (223)
328 3io3_A DEHA2D07832P; chaperone 94.0 0.075 2.6E-06 49.3 6.0 29 171-199 14-42 (348)
329 2nzj_A GTP-binding protein REM 94.0 0.029 9.8E-07 45.8 2.9 24 176-199 5-28 (175)
330 3eph_A TRNA isopentenyltransfe 94.0 0.035 1.2E-06 52.3 3.7 24 176-199 3-26 (409)
331 1u8z_A RAS-related protein RAL 93.9 0.033 1.1E-06 44.9 3.2 24 176-199 5-28 (168)
332 1z47_A CYSA, putative ABC-tran 93.9 0.032 1.1E-06 51.9 3.3 26 174-199 40-65 (355)
333 2bbs_A Cystic fibrosis transme 93.9 0.029 9.9E-07 50.7 3.0 26 174-199 63-88 (290)
334 1u0j_A DNA replication protein 93.9 0.069 2.4E-06 47.3 5.3 35 165-199 92-128 (267)
335 3con_A GTPase NRAS; structural 93.9 0.034 1.2E-06 46.3 3.2 24 176-199 22-45 (190)
336 2ged_A SR-beta, signal recogni 93.9 0.04 1.4E-06 45.9 3.7 26 174-199 47-72 (193)
337 3kta_A Chromosome segregation 93.8 0.039 1.3E-06 45.8 3.5 25 175-199 26-50 (182)
338 3end_A Light-independent proto 93.8 0.063 2.1E-06 48.7 5.2 40 173-215 39-78 (307)
339 3tui_C Methionine import ATP-b 93.8 0.033 1.1E-06 51.9 3.3 26 174-199 53-78 (366)
340 1tq4_A IIGP1, interferon-induc 93.8 0.048 1.7E-06 51.7 4.5 25 174-198 68-92 (413)
341 1p5z_B DCK, deoxycytidine kina 93.8 0.023 8E-07 50.4 2.2 26 174-199 23-48 (263)
342 2e87_A Hypothetical protein PH 93.8 3.3 0.00011 38.1 17.1 26 174-199 166-191 (357)
343 1kao_A RAP2A; GTP-binding prot 93.8 0.036 1.2E-06 44.7 3.1 23 177-199 5-27 (167)
344 1ek0_A Protein (GTP-binding pr 93.8 0.036 1.2E-06 44.9 3.2 23 177-199 5-27 (170)
345 2orw_A Thymidine kinase; TMTK, 93.8 0.04 1.4E-06 46.1 3.5 24 176-199 4-27 (184)
346 1z08_A RAS-related protein RAB 93.8 0.036 1.2E-06 45.0 3.1 24 176-199 7-30 (170)
347 3rlf_A Maltose/maltodextrin im 93.8 0.034 1.2E-06 52.1 3.3 26 174-199 28-53 (381)
348 2gj8_A MNME, tRNA modification 93.8 0.034 1.2E-06 45.7 3.0 24 176-199 5-28 (172)
349 3nh6_A ATP-binding cassette SU 93.8 0.023 7.8E-07 51.8 2.0 26 174-199 79-104 (306)
350 1nij_A Hypothetical protein YJ 93.8 0.03 1E-06 51.4 2.8 25 174-198 3-27 (318)
351 2yyz_A Sugar ABC transporter, 93.8 0.035 1.2E-06 51.7 3.3 26 174-199 28-53 (359)
352 1g8f_A Sulfate adenylyltransfe 93.7 0.057 1.9E-06 52.7 4.9 43 157-199 375-419 (511)
353 1c1y_A RAS-related protein RAP 93.7 0.037 1.3E-06 44.7 3.1 23 177-199 5-27 (167)
354 1z0j_A RAB-22, RAS-related pro 93.7 0.037 1.3E-06 44.8 3.1 23 177-199 8-30 (170)
355 2lkc_A Translation initiation 93.7 0.047 1.6E-06 44.7 3.8 26 174-199 7-32 (178)
356 1r8s_A ADP-ribosylation factor 93.7 0.039 1.3E-06 44.5 3.2 22 178-199 3-24 (164)
357 1m7b_A RND3/RHOE small GTP-bin 93.7 0.037 1.3E-06 45.9 3.1 24 176-199 8-31 (184)
358 2it1_A 362AA long hypothetical 93.7 0.036 1.2E-06 51.7 3.3 26 174-199 28-53 (362)
359 2erx_A GTP-binding protein DI- 93.7 0.037 1.3E-06 44.9 3.1 23 177-199 5-27 (172)
360 1nrj_B SR-beta, signal recogni 93.7 0.047 1.6E-06 46.6 3.8 26 174-199 11-36 (218)
361 1ky3_A GTP-binding protein YPT 93.7 0.038 1.3E-06 45.3 3.1 26 174-199 7-32 (182)
362 1g29_1 MALK, maltose transport 93.6 0.037 1.3E-06 51.8 3.3 26 174-199 28-53 (372)
363 3ihw_A Centg3; RAS, centaurin, 93.6 0.039 1.3E-06 45.9 3.1 24 176-199 21-44 (184)
364 1v43_A Sugar-binding transport 93.6 0.038 1.3E-06 51.7 3.3 26 174-199 36-61 (372)
365 1wms_A RAB-9, RAB9, RAS-relate 93.6 0.04 1.4E-06 45.1 3.1 24 176-199 8-31 (177)
366 1fzq_A ADP-ribosylation factor 93.6 0.043 1.5E-06 45.5 3.3 25 174-198 15-39 (181)
367 1g16_A RAS-related protein SEC 93.6 0.04 1.4E-06 44.6 3.1 24 176-199 4-27 (170)
368 2h92_A Cytidylate kinase; ross 93.6 0.04 1.4E-06 47.2 3.2 24 176-199 4-27 (219)
369 2hxs_A RAB-26, RAS-related pro 93.6 0.043 1.5E-06 44.9 3.3 24 176-199 7-30 (178)
370 1moz_A ARL1, ADP-ribosylation 93.6 0.041 1.4E-06 45.3 3.2 26 173-198 16-41 (183)
371 3q85_A GTP-binding protein REM 93.6 0.038 1.3E-06 44.8 2.9 22 177-198 4-25 (169)
372 3gqb_A V-type ATP synthase alp 93.5 0.049 1.7E-06 53.1 4.0 57 166-227 211-269 (578)
373 3q72_A GTP-binding protein RAD 93.5 0.038 1.3E-06 44.7 2.9 22 177-198 4-25 (166)
374 3t1o_A Gliding protein MGLA; G 93.5 0.042 1.4E-06 45.8 3.2 24 176-199 15-38 (198)
375 2fn4_A P23, RAS-related protei 93.5 0.041 1.4E-06 45.1 3.1 25 175-199 9-33 (181)
376 1f6b_A SAR1; gtpases, N-termin 93.5 0.052 1.8E-06 45.7 3.8 25 174-198 24-48 (198)
377 1svi_A GTP-binding protein YSX 93.5 0.046 1.6E-06 45.6 3.4 25 174-198 22-46 (195)
378 2yv5_A YJEQ protein; hydrolase 93.5 0.063 2.2E-06 48.8 4.5 33 163-199 156-188 (302)
379 3c5c_A RAS-like protein 12; GD 93.5 0.043 1.5E-06 45.7 3.1 24 176-199 22-45 (187)
380 1r2q_A RAS-related protein RAB 93.4 0.045 1.5E-06 44.3 3.2 23 177-199 8-30 (170)
381 1m2o_B GTP-binding protein SAR 93.4 0.044 1.5E-06 45.8 3.1 25 175-199 23-47 (190)
382 1upt_A ARL1, ADP-ribosylation 93.4 0.046 1.6E-06 44.4 3.2 24 176-199 8-31 (171)
383 3d31_A Sulfate/molybdate ABC t 93.4 0.032 1.1E-06 51.8 2.4 26 174-199 25-50 (348)
384 1z0f_A RAB14, member RAS oncog 93.4 0.046 1.6E-06 44.7 3.2 25 175-199 15-39 (179)
385 2cxx_A Probable GTP-binding pr 93.4 0.04 1.4E-06 45.7 2.8 23 177-199 3-25 (190)
386 4dsu_A GTPase KRAS, isoform 2B 93.4 0.046 1.6E-06 45.2 3.1 23 177-199 6-28 (189)
387 2v3c_C SRP54, signal recogniti 93.4 0.032 1.1E-06 53.4 2.4 26 174-199 98-123 (432)
388 2bme_A RAB4A, RAS-related prot 93.3 0.046 1.6E-06 45.1 3.1 24 176-199 11-34 (186)
389 3gmt_A Adenylate kinase; ssgci 93.3 0.048 1.6E-06 47.3 3.2 24 176-199 9-32 (230)
390 2r8r_A Sensor protein; KDPD, P 93.3 0.049 1.7E-06 47.0 3.2 23 177-199 8-30 (228)
391 3kkq_A RAS-related protein M-R 93.3 0.048 1.6E-06 44.9 3.2 24 176-199 19-42 (183)
392 1lw7_A Transcriptional regulat 93.3 0.045 1.5E-06 51.2 3.3 25 175-199 170-194 (365)
393 2www_A Methylmalonic aciduria 93.3 0.053 1.8E-06 50.4 3.7 26 174-199 73-98 (349)
394 2y8e_A RAB-protein 6, GH09086P 93.3 0.048 1.6E-06 44.6 3.1 24 176-199 15-38 (179)
395 4gzl_A RAS-related C3 botulinu 93.2 0.056 1.9E-06 45.7 3.6 27 173-199 28-54 (204)
396 3pqc_A Probable GTP-binding pr 93.2 0.054 1.8E-06 45.0 3.4 25 175-199 23-47 (195)
397 3fdi_A Uncharacterized protein 93.2 0.057 2E-06 45.8 3.6 25 175-199 6-30 (201)
398 3bc1_A RAS-related protein RAB 93.2 0.05 1.7E-06 45.1 3.2 24 176-199 12-35 (195)
399 2qm8_A GTPase/ATPase; G protei 93.2 0.058 2E-06 49.9 3.8 27 173-199 53-79 (337)
400 2ewv_A Twitching motility prot 93.2 0.062 2.1E-06 50.4 4.0 108 173-294 134-246 (372)
401 3gd7_A Fusion complex of cysti 93.2 0.048 1.6E-06 51.4 3.3 25 174-198 46-70 (390)
402 2a9k_A RAS-related protein RAL 93.2 0.051 1.7E-06 44.8 3.2 24 176-199 19-42 (187)
403 1mh1_A RAC1; GTP-binding, GTPa 93.2 0.051 1.8E-06 44.8 3.2 23 177-199 7-29 (186)
404 2oil_A CATX-8, RAS-related pro 93.2 0.051 1.8E-06 45.3 3.2 24 176-199 26-49 (193)
405 3tw8_B RAS-related protein RAB 93.1 0.039 1.3E-06 45.2 2.4 25 175-199 9-33 (181)
406 2cjw_A GTP-binding protein GEM 93.1 0.053 1.8E-06 45.5 3.2 23 176-198 7-29 (192)
407 2iwr_A Centaurin gamma 1; ANK 93.1 0.038 1.3E-06 45.4 2.2 23 177-199 9-31 (178)
408 3t5g_A GTP-binding protein RHE 93.1 0.052 1.8E-06 44.6 3.1 24 176-199 7-30 (181)
409 2efe_B Small GTP-binding prote 93.1 0.053 1.8E-06 44.5 3.1 24 176-199 13-36 (181)
410 3bwd_D RAC-like GTP-binding pr 93.1 0.053 1.8E-06 44.5 3.2 24 176-199 9-32 (182)
411 1oxx_K GLCV, glucose, ABC tran 93.1 0.03 1E-06 52.1 1.7 26 174-199 30-55 (353)
412 2bov_A RAla, RAS-related prote 93.1 0.053 1.8E-06 45.6 3.2 25 175-199 14-38 (206)
413 2qnr_A Septin-2, protein NEDD5 93.1 0.044 1.5E-06 49.8 2.7 22 177-198 20-41 (301)
414 2g6b_A RAS-related protein RAB 93.0 0.056 1.9E-06 44.3 3.2 24 176-199 11-34 (180)
415 1ypw_A Transitional endoplasmi 93.0 0.036 1.2E-06 57.5 2.3 46 154-199 477-535 (806)
416 3dz8_A RAS-related protein RAB 93.0 0.057 1.9E-06 45.0 3.2 24 176-199 24-47 (191)
417 4akg_A Glutathione S-transfera 93.0 0.28 9.6E-06 57.1 9.6 65 176-263 1268-1346(2695)
418 1vg8_A RAS-related protein RAB 93.0 0.056 1.9E-06 45.5 3.1 25 175-199 8-32 (207)
419 1pui_A ENGB, probable GTP-bind 92.9 0.032 1.1E-06 47.3 1.5 25 174-198 25-49 (210)
420 2obl_A ESCN; ATPase, hydrolase 92.9 0.057 2E-06 50.1 3.4 27 173-199 69-95 (347)
421 3cbq_A GTP-binding protein REM 92.9 0.044 1.5E-06 46.1 2.4 23 175-197 23-45 (195)
422 3llu_A RAS-related GTP-binding 92.9 0.051 1.7E-06 45.6 2.8 25 175-199 20-44 (196)
423 1gwn_A RHO-related GTP-binding 92.9 0.057 1.9E-06 45.9 3.1 25 175-199 28-52 (205)
424 2axn_A 6-phosphofructo-2-kinas 92.9 0.067 2.3E-06 52.5 4.0 26 174-199 34-59 (520)
425 2atv_A RERG, RAS-like estrogen 92.9 0.073 2.5E-06 44.5 3.8 26 174-199 27-52 (196)
426 2fg5_A RAB-22B, RAS-related pr 92.9 0.058 2E-06 45.1 3.1 24 176-199 24-47 (192)
427 3clv_A RAB5 protein, putative; 92.9 0.059 2E-06 45.0 3.1 25 175-199 7-31 (208)
428 3cr8_A Sulfate adenylyltranfer 92.9 0.075 2.6E-06 52.5 4.3 26 174-199 368-393 (552)
429 1zd9_A ADP-ribosylation factor 92.9 0.061 2.1E-06 44.7 3.2 24 176-199 23-46 (188)
430 2gf9_A RAS-related protein RAB 92.8 0.061 2.1E-06 44.7 3.2 24 176-199 23-46 (189)
431 2ew1_A RAS-related protein RAB 92.8 0.059 2E-06 45.6 3.1 25 175-199 26-50 (201)
432 3tqf_A HPR(Ser) kinase; transf 92.8 0.065 2.2E-06 44.1 3.1 23 176-198 17-39 (181)
433 3reg_A RHO-like small GTPase; 92.8 0.062 2.1E-06 44.9 3.2 24 176-199 24-47 (194)
434 2fh5_B SR-beta, signal recogni 92.8 0.061 2.1E-06 45.7 3.2 25 175-199 7-31 (214)
435 1u0l_A Probable GTPase ENGC; p 92.8 0.092 3.1E-06 47.6 4.5 34 163-199 160-193 (301)
436 3oes_A GTPase rhebl1; small GT 92.8 0.06 2.1E-06 45.3 3.1 26 174-199 23-48 (201)
437 1zbd_A Rabphilin-3A; G protein 92.8 0.059 2E-06 45.3 3.0 24 176-199 9-32 (203)
438 2a5j_A RAS-related protein RAB 92.8 0.063 2.1E-06 44.7 3.2 24 176-199 22-45 (191)
439 3tkl_A RAS-related protein RAB 92.8 0.063 2.2E-06 44.7 3.2 24 176-199 17-40 (196)
440 1ega_A Protein (GTP-binding pr 92.7 0.064 2.2E-06 48.7 3.3 25 175-199 8-32 (301)
441 2gza_A Type IV secretion syste 92.7 0.052 1.8E-06 50.7 2.8 26 174-199 174-199 (361)
442 1cp2_A CP2, nitrogenase iron p 92.7 0.13 4.5E-06 45.5 5.3 37 176-215 2-38 (269)
443 3tmk_A Thymidylate kinase; pho 92.7 0.2 6.7E-06 43.0 6.1 25 175-199 5-29 (216)
444 1z06_A RAS-related protein RAB 92.6 0.067 2.3E-06 44.4 3.1 25 175-199 20-44 (189)
445 1ksh_A ARF-like protein 2; sma 92.6 0.072 2.5E-06 44.0 3.3 27 173-199 16-42 (186)
446 1x3s_A RAS-related protein RAB 92.6 0.068 2.3E-06 44.4 3.2 24 176-199 16-39 (195)
447 2p5s_A RAS and EF-hand domain 92.6 0.068 2.3E-06 44.9 3.1 26 174-199 27-52 (199)
448 2gf0_A GTP-binding protein DI- 92.6 0.068 2.3E-06 44.6 3.1 25 175-199 8-32 (199)
449 2rcn_A Probable GTPase ENGC; Y 92.6 0.067 2.3E-06 49.7 3.3 24 176-199 216-239 (358)
450 2q3h_A RAS homolog gene family 92.6 0.063 2.2E-06 45.0 2.9 25 175-199 20-44 (201)
451 2bcg_Y Protein YP2, GTP-bindin 92.6 0.068 2.3E-06 45.1 3.1 24 176-199 9-32 (206)
452 2o52_A RAS-related protein RAB 92.5 0.064 2.2E-06 45.2 2.9 25 175-199 25-49 (200)
453 2zts_A Putative uncharacterize 92.5 0.078 2.7E-06 46.2 3.5 51 174-228 29-79 (251)
454 2h17_A ADP-ribosylation factor 92.5 0.064 2.2E-06 44.2 2.8 24 176-199 22-45 (181)
455 2npi_A Protein CLP1; CLP1-PCF1 92.4 0.062 2.1E-06 51.9 3.0 26 174-199 137-162 (460)
456 2p67_A LAO/AO transport system 92.4 0.083 2.8E-06 48.9 3.7 27 173-199 54-80 (341)
457 2qu8_A Putative nucleolar GTP- 92.4 0.085 2.9E-06 45.5 3.6 26 174-199 28-53 (228)
458 4dkx_A RAS-related protein RAB 92.4 0.075 2.6E-06 45.7 3.2 22 177-198 15-36 (216)
459 4b3f_X DNA-binding protein smu 92.4 0.17 5.7E-06 51.2 6.2 61 163-229 195-255 (646)
460 3lxx_A GTPase IMAP family memb 92.4 0.071 2.4E-06 46.4 3.0 26 174-199 28-53 (239)
461 2g3y_A GTP-binding protein GEM 92.4 0.073 2.5E-06 45.5 3.1 22 176-197 38-59 (211)
462 2atx_A Small GTP binding prote 92.3 0.077 2.6E-06 44.2 3.1 24 176-199 19-42 (194)
463 1bif_A 6-phosphofructo-2-kinas 92.3 0.087 3E-06 51.0 3.8 26 174-199 38-63 (469)
464 3k53_A Ferrous iron transport 92.3 0.088 3E-06 46.8 3.6 25 175-199 3-27 (271)
465 2qag_B Septin-6, protein NEDD5 92.3 0.066 2.3E-06 50.9 2.9 21 178-198 45-65 (427)
466 2fv8_A H6, RHO-related GTP-bin 92.3 0.077 2.6E-06 44.9 3.1 24 176-199 26-49 (207)
467 2j1l_A RHO-related GTP-binding 92.3 0.071 2.4E-06 45.5 2.8 23 176-198 35-57 (214)
468 3kjh_A CO dehydrogenase/acetyl 92.2 0.15 5.2E-06 44.3 5.1 39 178-219 3-41 (254)
469 2b6h_A ADP-ribosylation factor 92.2 0.064 2.2E-06 44.9 2.5 25 174-198 28-52 (192)
470 3cph_A RAS-related protein SEC 92.2 0.079 2.7E-06 44.8 3.1 25 175-199 20-44 (213)
471 2afh_E Nitrogenase iron protei 92.2 0.09 3.1E-06 47.2 3.6 25 175-199 2-26 (289)
472 2j0v_A RAC-like GTP-binding pr 92.2 0.079 2.7E-06 44.9 3.1 24 176-199 10-33 (212)
473 2hup_A RAS-related protein RAB 92.2 0.08 2.7E-06 44.6 3.1 25 175-199 29-53 (201)
474 2il1_A RAB12; G-protein, GDP, 92.2 0.063 2.1E-06 44.9 2.4 24 176-199 27-50 (192)
475 2gk6_A Regulator of nonsense t 92.2 0.12 4.1E-06 52.0 4.9 67 158-229 180-246 (624)
476 4bas_A ADP-ribosylation factor 92.2 0.072 2.5E-06 44.5 2.8 26 174-199 16-41 (199)
477 1x6v_B Bifunctional 3'-phospho 92.1 0.093 3.2E-06 52.5 3.9 26 174-199 51-76 (630)
478 3iev_A GTP-binding protein ERA 92.1 0.079 2.7E-06 48.2 3.1 26 174-199 9-34 (308)
479 2gco_A H9, RHO-related GTP-bin 92.1 0.084 2.9E-06 44.4 3.1 24 176-199 26-49 (201)
480 2dpy_A FLII, flagellum-specifi 92.1 0.083 2.8E-06 50.6 3.4 27 173-199 155-181 (438)
481 3q3j_B RHO-related GTP-binding 92.0 0.087 3E-06 44.9 3.2 24 176-199 28-51 (214)
482 2fu5_C RAS-related protein RAB 92.0 0.05 1.7E-06 44.8 1.6 23 176-198 9-31 (183)
483 3hdt_A Putative kinase; struct 92.0 0.12 4E-06 44.7 3.9 26 174-199 13-38 (223)
484 1f2t_A RAD50 ABC-ATPase; DNA d 92.0 0.12 4E-06 41.6 3.7 25 175-199 23-47 (149)
485 1m8p_A Sulfate adenylyltransfe 91.9 0.1 3.6E-06 51.8 4.0 26 174-199 395-420 (573)
486 2h57_A ADP-ribosylation factor 91.9 0.06 2.1E-06 44.8 2.0 25 175-199 21-45 (190)
487 1c9k_A COBU, adenosylcobinamid 91.9 0.079 2.7E-06 44.1 2.6 34 178-218 2-35 (180)
488 4dzz_A Plasmid partitioning pr 91.8 0.15 5.2E-06 42.9 4.4 43 176-221 2-45 (206)
489 3euj_A Chromosome partition pr 91.8 0.092 3.2E-06 50.8 3.3 24 176-199 30-53 (483)
490 2f7s_A C25KG, RAS-related prot 91.7 0.09 3.1E-06 44.7 2.9 24 176-199 26-49 (217)
491 2qag_C Septin-7; cell cycle, c 91.6 0.082 2.8E-06 50.3 2.7 22 178-199 34-55 (418)
492 2gks_A Bifunctional SAT/APS ki 91.5 0.2 7E-06 49.4 5.5 26 174-199 371-396 (546)
493 1yqt_A RNAse L inhibitor; ATP- 91.4 0.1 3.5E-06 51.4 3.3 25 175-199 47-71 (538)
494 1wf3_A GTP-binding protein; GT 91.4 0.12 4E-06 47.0 3.4 25 175-199 7-31 (301)
495 3cpj_B GTP-binding protein YPT 91.4 0.11 3.8E-06 44.5 3.1 24 176-199 14-37 (223)
496 3ozx_A RNAse L inhibitor; ATP 91.4 0.096 3.3E-06 51.6 3.0 25 175-199 294-318 (538)
497 2woj_A ATPase GET3; tail-ancho 91.3 0.33 1.1E-05 45.0 6.5 26 174-199 17-42 (354)
498 2woo_A ATPase GET3; tail-ancho 91.3 0.31 1.1E-05 44.7 6.2 27 173-199 17-43 (329)
499 3ch4_B Pmkase, phosphomevalona 91.3 0.17 5.7E-06 42.9 4.0 26 174-199 10-35 (202)
500 1yqt_A RNAse L inhibitor; ATP- 91.3 0.11 3.7E-06 51.3 3.3 121 175-297 312-467 (538)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.6e-37 Score=307.92 Aligned_cols=224 Identities=17% Similarity=0.129 Sum_probs=182.3
Q ss_pred ccchhhHHHHHHHHhcC---CceEEEEEcCCCCcHHHHHHHHHh--hhccCCCCCCeEEEEEeCCcC--CHHHHHHHHHH
Q 041476 157 VGLESTFDKVWRCLVEG---QFGIIGLYGMGGVGKTTLLAQINN--KFLHTPNYFDIVIWVVVSKDM--QLERIQQKIGE 229 (397)
Q Consensus 157 vGr~~~~~~l~~~L~~~---~~~vi~I~G~~GvGKTtLa~~v~~--~~~~~~~~f~~~~wv~vs~~~--~~~~i~~~i~~ 229 (397)
+||+.++++|.++|..+ ..++|+|+||||+||||||+++|+ +. .+..+|++++||++++.+ ++..++..|++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999754 679999999999999999999998 44 568899999999999885 88999999999
Q ss_pred hhCcc---------cCCCHHHHHHHHHHHhcCC-cEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhhhhhc
Q 041476 230 RIGWL---------QNRSFEEKASGIFNLLSKM-KFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVCGLME 299 (397)
Q Consensus 230 ~l~~~---------~~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~~~ 299 (397)
+++.. ...+...+...+++.|+++ ||||||||||+...+ .+ + ..+||+||||||+..++..++
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~-----~-~~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW-----A-QELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH-----H-HHTTCEEEEEESBGGGGGGCC
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc-----c-ccCCCEEEEEcCCHHHHHHcC
Confidence 98754 1234566789999999996 999999999997654 21 1 126899999999999988775
Q ss_pred -cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcCCCChhHHHHHHHHHhccc
Q 041476 300 -AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSSKKTPEEWSYAIQMLRRSA 378 (397)
Q Consensus 300 -~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~~l~~~~ 378 (397)
....|++++|++++||+||.+.++... .++.+.+++++|+++|+|+||||+++|+.|+.+ + |+.+ +.+.+..
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l 355 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKL 355 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHh
Confidence 346799999999999999999987643 246788899999999999999999999999774 2 5554 4555543
Q ss_pred CCCCCChhHHHhhhhcccC
Q 041476 379 YEFPGMEKEVFRLLKFSYD 397 (397)
Q Consensus 379 ~~~~~~~~~~~~~L~lsY~ 397 (397)
++.+ .+.+.++|.+||+
T Consensus 356 ~~~~--~~~i~~~l~~Sy~ 372 (549)
T 2a5y_B 356 ESRG--LVGVECITPYSYK 372 (549)
T ss_dssp HHHC--SSTTCCCSSSSSS
T ss_pred hccc--HHHHHHHHhcccc
Confidence 3222 2368888999986
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=2.3e-30 Score=283.52 Aligned_cols=231 Identities=23% Similarity=0.358 Sum_probs=184.6
Q ss_pred CCccccchhhHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCC-CCCeEEEEEeCCcC--CHHHHHHHH
Q 041476 153 QPTIVGLESTFDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPN-YFDIVIWVVVSKDM--QLERIQQKI 227 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~--~~~~i~~~i 227 (397)
++.||||+.++++|.++|.. +..++|+|+||||+||||||+++|++...... .|+.++|+++++.. +....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 45799999999999999963 57899999999999999999999998522234 55688899998854 344556777
Q ss_pred HHhhCcc------cCCCHHHHHHHHHHHhcCC--cEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhhhh-h
Q 041476 228 GERIGWL------QNRSFEEKASGIFNLLSKM--KFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVCGL-M 298 (397)
Q Consensus 228 ~~~l~~~------~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~-~ 298 (397)
+..+... ...+.+.+...++..+.++ ||||||||+|+...|..+ .+|++||+|||++.++.. +
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTTTCC
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------cCCCEEEEEcCCHHHHHhhc
Confidence 7777643 2456788889999999877 999999999998777653 457999999999999854 4
Q ss_pred ccCceeecCC-CChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 041476 299 EAQKTFKVEC-LADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSSKKTPEEWSYAIQMLRRS 377 (397)
Q Consensus 299 ~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~~l~~~ 377 (397)
.....+++.+ |+++++++||...++.. ++.+.+++++|+++|+|+||||.++|++|+.+. ..|+..++.+...
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNK 348 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhh
Confidence 5667889996 99999999999988543 244556799999999999999999999998753 4799999998776
Q ss_pred cCCC-----CCChhHHHhhhhcccC
Q 041476 378 AYEF-----PGMEKEVFRLLKFSYD 397 (397)
Q Consensus 378 ~~~~-----~~~~~~~~~~L~lsY~ 397 (397)
.+.. ....+.+..+|.+||+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~ 373 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVE 373 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHH
T ss_pred hhhhcccccccchHHHHHHHHHHHH
Confidence 4322 1122479999999985
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=1.3e-30 Score=268.01 Aligned_cols=211 Identities=17% Similarity=0.212 Sum_probs=164.8
Q ss_pred ccccchhhHHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCe-EEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 155 TIVGLESTFDKVWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDI-VIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
..|||+.++++|.++|.+ +..++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..|.+.+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 459999999999999986 567999999999999999999999875 44678986 999999999998888888877543
Q ss_pred cc-----cC--------CCHHHHHHHHHHHh---cCCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhhh
Q 041476 233 WL-----QN--------RSFEEKASGIFNLL---SKMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVCG 296 (397)
Q Consensus 233 ~~-----~~--------~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~ 296 (397)
.. .. .+.+.+...+++.| .+||+||||||+|+...|+.+ + +||+||||||+..++.
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-----~---pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----N---LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-----H---SSCCEEEECSCSHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-----C---CCeEEEEeccChHHHH
Confidence 21 00 12344566777766 689999999999998888764 2 5899999999999986
Q ss_pred hhccCceeecC------CCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcCCC-ChhHHHH
Q 041476 297 LMEAQKTFKVE------CLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSSKK-TPEEWSY 369 (397)
Q Consensus 297 ~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~-~~~~w~~ 369 (397)
.+.....+.++ +|+.+|||+||++.+... ..++..+| |+|+||||.++|+.|+.+. +.++|+.
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 55544456666 999999999999985321 12233444 9999999999999999863 6788875
Q ss_pred HHHHHhcccCCCCCChhHHHhhhhcccC
Q 041476 370 AIQMLRRSAYEFPGMEKEVFRLLKFSYD 397 (397)
Q Consensus 370 ~~~~l~~~~~~~~~~~~~~~~~L~lsY~ 397 (397)
. . .+.+..+|.+||+
T Consensus 350 ~------------~-~~~I~aaLelSYd 364 (1221)
T 1vt4_I 350 V------------N-CDKLTTIIESSLN 364 (1221)
T ss_dssp C------------S-CHHHHHHHHHHHH
T ss_pred C------------C-hhHHHHHHHHHHH
Confidence 2 1 2478888888874
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=249.52 Aligned_cols=228 Identities=23% Similarity=0.386 Sum_probs=172.5
Q ss_pred CCccccchhhHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhhccC-CCCC-CeEEEEEeCCcCCHHHHHHHH-
Q 041476 153 QPTIVGLESTFDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKFLHT-PNYF-DIVIWVVVSKDMQLERIQQKI- 227 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~-~~~f-~~~~wv~vs~~~~~~~i~~~i- 227 (397)
++.||||+.++++|.++|.. +..++|+|+||||+||||||.+++++. .. ..+| +.++|++++.. +...++..+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 45699999999999999974 467899999999999999999999875 33 4678 58999999875 333344433
Q ss_pred --HHhhCcc------cCCCHHHHHHHHHHHhcC--CcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhhhh
Q 041476 228 --GERIGWL------QNRSFEEKASGIFNLLSK--MKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVCGL 297 (397)
Q Consensus 228 --~~~l~~~------~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~ 297 (397)
...++.. ...+.......+...+.+ +++||||||+|+...+..+ .+|++||+|||+..++..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh--------cCCCeEEEECCCcHHHHh
Confidence 4444421 345667788888888876 7899999999987665532 357999999999998765
Q ss_pred hccCceeec---CCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcCCCChhHHHHHHHHH
Q 041476 298 MEAQKTFKV---ECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSSKKTPEEWSYAIQML 374 (397)
Q Consensus 298 ~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~~l 374 (397)
+. ...+++ ++|+.+++++||...++... ....+.+.+|+++|+|+||||..+|+.|+.+ ..+|+.+++.+
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l 345 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQL 345 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 43 234444 58999999999999987532 1223568999999999999999999999874 34799999888
Q ss_pred hcccCC-C----CCChhHHHhhhhcccC
Q 041476 375 RRSAYE-F----PGMEKEVFRLLKFSYD 397 (397)
Q Consensus 375 ~~~~~~-~----~~~~~~~~~~L~lsY~ 397 (397)
...... + ......+..+|.+||+
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~ 373 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVE 373 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHH
Confidence 765322 1 1122478888888884
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.67 E-value=5.9e-16 Score=146.03 Aligned_cols=193 Identities=18% Similarity=0.144 Sum_probs=132.8
Q ss_pred CCccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC------CHHHHHHH
Q 041476 153 QPTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM------QLERIQQK 226 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~------~~~~i~~~ 226 (397)
++.|+||+.+++.|.+++..+ +++.|+|++|+|||||++++.+.. . .+|+++.... +...+++.
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHH
Confidence 357999999999999998764 799999999999999999999875 1 6777765432 56677777
Q ss_pred HHHhhCc---------------c-----cCCCHHHHHHHHHHHhcC-CcEEEEEecCCCchh--------hhhcCCCCCC
Q 041476 227 IGERIGW---------------L-----QNRSFEEKASGIFNLLSK-MKFLLLLDDIWERID--------LAKMGVPFPA 277 (397)
Q Consensus 227 i~~~l~~---------------~-----~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~--------~~~l~~~l~~ 277 (397)
+.+.+.. . ...+..+....+.+.... ++++|||||++.... +..+... +.
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~-~~ 159 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY-AY 159 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH-HH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH-HH
Confidence 7665542 0 123455566666665543 499999999965322 1111111 11
Q ss_pred CCCCCcEEEEEcCChhhhhhh-----------cc-CceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcC
Q 041476 278 SSRNASKIVFTTRLVDVCGLM-----------EA-QKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECS 345 (397)
Q Consensus 278 ~~~~gs~IlvTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~ 345 (397)
....+.++|+|++.......+ +. ...+++.+|+.+++.+++.+.+...... -..+....|++.|+
T Consensus 160 ~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~~~tg 236 (350)
T 2qen_A 160 DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAVELLD 236 (350)
T ss_dssp HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHHT
T ss_pred HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhC
Confidence 112468899998876431111 11 2378999999999999998765322211 12456789999999
Q ss_pred CchhHHHHHHHhhc
Q 041476 346 GLPLALITTGRAMS 359 (397)
Q Consensus 346 GlPLai~~~~~~L~ 359 (397)
|+|+++..++..+.
T Consensus 237 G~P~~l~~~~~~~~ 250 (350)
T 2qen_A 237 GIPGWLVVFGVEYL 250 (350)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999987643
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.66 E-value=7.7e-16 Score=145.53 Aligned_cols=191 Identities=15% Similarity=0.158 Sum_probs=125.2
Q ss_pred CCccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-----CCHHHHHHHH
Q 041476 153 QPTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD-----MQLERIQQKI 227 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-----~~~~~i~~~i 227 (397)
++.|+||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+.. .. ..+|+.+... .+...++..+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHHH
Confidence 3578999999999999 764 699999999999999999999886 22 2578887643 3445555555
Q ss_pred HHhhCc-------------------------c------cCCCHHHHHHHHHHHhcCCcEEEEEecCCCc-----hhhhhc
Q 041476 228 GERIGW-------------------------L------QNRSFEEKASGIFNLLSKMKFLLLLDDIWER-----IDLAKM 271 (397)
Q Consensus 228 ~~~l~~-------------------------~------~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----~~~~~l 271 (397)
.+.+.. . .......+...+.+.-. ++++|||||++.. .++..+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 443310 0 01233444444444322 4999999999642 122222
Q ss_pred CCCCCCCCCCCcEEEEEcCChhhhhh----------h-cc-CceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHH
Q 041476 272 GVPFPASSRNASKIVFTTRLVDVCGL----------M-EA-QKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQT 339 (397)
Q Consensus 272 ~~~l~~~~~~gs~IlvTtR~~~v~~~----------~-~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~ 339 (397)
... +.....+..+|+|++....... + +. ...+++.+|+.+++.+++.+.+....... .. ...
T Consensus 161 l~~-~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~----~~~ 234 (357)
T 2fna_A 161 LAY-AYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD----YEV 234 (357)
T ss_dssp HHH-HHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC----HHH
T ss_pred HHH-HHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc----HHH
Confidence 111 1111246789999997653211 1 11 25789999999999999988653211111 11 288
Q ss_pred HHHHcCCchhHHHHHHHhhcC
Q 041476 340 VANECSGLPLALITTGRAMSS 360 (397)
Q Consensus 340 I~~~c~GlPLai~~~~~~L~~ 360 (397)
|++.|+|+|+++..++..+..
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~ 255 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLD 255 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHcc
Confidence 999999999999999887653
No 7
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.66 E-value=5.1e-16 Score=121.45 Aligned_cols=83 Identities=7% Similarity=0.066 Sum_probs=73.9
Q ss_pred hhhhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHH
Q 041476 9 LTCDALSTGFINCTRRKAAYVSRLEHNLIAIQTQLQKLIEAKNDVMTRVANAEQQQ-LRRLNKVQGWLSRVEAVEAEVGE 87 (397)
Q Consensus 9 a~i~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~i~~ae~~~-~~~~~~~~~Wl~~l~~~~~d~ed 87 (397)
|+++++++||.+++.+|+.++.|++++++.|+++|+.|+++|.+ ++.+. ...++.++.|+++||+++||+||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999988 45442 23478999999999999999999
Q ss_pred HhhhhHHHHHh
Q 041476 88 LTRDSSQEIEK 98 (397)
Q Consensus 88 ~ld~~~~~~~~ 98 (397)
|+|+|.++...
T Consensus 74 ~iD~f~~~~~~ 84 (115)
T 3qfl_A 74 VVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999988753
No 8
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.64 E-value=2e-15 Score=145.82 Aligned_cols=201 Identities=13% Similarity=0.094 Sum_probs=135.3
Q ss_pred CccccchhhHHHHHHHH-hc------CCceEEEE--EcCCCCcHHHHHHHHHhhhccC--CCCCC-eEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCL-VE------GQFGIIGL--YGMGGVGKTTLLAQINNKFLHT--PNYFD-IVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L-~~------~~~~vi~I--~G~~GvGKTtLa~~v~~~~~~~--~~~f~-~~~wv~vs~~~~~~ 221 (397)
+.|+||+.+++.|.+++ .. ...+.+.| +|++|+|||||++.+++..... ...|+ ..+|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999988 42 24567777 9999999999999999876210 01123 46788877777889
Q ss_pred HHHHHHHHhhCcc---cCCCHHHHHHHHHHHhc--CCcEEEEEecCCCc--------hhhhhcCCCC--CCCCC--CCcE
Q 041476 222 RIQQKIGERIGWL---QNRSFEEKASGIFNLLS--KMKFLLLLDDIWER--------IDLAKMGVPF--PASSR--NASK 284 (397)
Q Consensus 222 ~i~~~i~~~l~~~---~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~--------~~~~~l~~~l--~~~~~--~gs~ 284 (397)
.++..++.+++.. ...+.......+.+.+. +++++|||||++.. ..+..+...+ ++..+ ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999998754 13345566677777775 67999999999752 2233222220 11112 3456
Q ss_pred EEEEcCChhhhhhhc---------cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcC------Cchh
Q 041476 285 IVFTTRLVDVCGLME---------AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECS------GLPL 349 (397)
Q Consensus 285 IlvTtR~~~v~~~~~---------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~------GlPL 349 (397)
+|+||+.......+. ....+.+.+|+.++.+++|...+.... ....-..+....|++.|+ |.|.
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 888887655321111 122389999999999999987643211 111123567889999999 9997
Q ss_pred HHHHHH
Q 041476 350 ALITTG 355 (397)
Q Consensus 350 ai~~~~ 355 (397)
.+..+.
T Consensus 261 ~~~~l~ 266 (412)
T 1w5s_A 261 RAIVAL 266 (412)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=5.6e-13 Score=127.34 Aligned_cols=216 Identities=13% Similarity=0.022 Sum_probs=145.2
Q ss_pred CccccchhhHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhccC----CCC-CCeEEEEEeCCcC-CHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVE----GQFGIIGLYGMGGVGKTTLLAQINNKFLHT----PNY-FDIVIWVVVSKDM-QLERI 223 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~----~~~-f~~~~wv~vs~~~-~~~~i 223 (397)
..++||+.+++.+.+++.. ...+.+.|+|++|+|||+||+.+++..... ... ....+|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5789999999999887754 346789999999999999999999875211 111 3467788887777 88889
Q ss_pred HHHHHHhhCcc----cCCCHHHHHHHHHHHhcCCcEEEEEecCCCch------h-hhhcCCCCCCCCCCCcEEEEEcCCh
Q 041476 224 QQKIGERIGWL----QNRSFEEKASGIFNLLSKMKFLLLLDDIWERI------D-LAKMGVPFPASSRNASKIVFTTRLV 292 (397)
Q Consensus 224 ~~~i~~~l~~~----~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------~-~~~l~~~l~~~~~~gs~IlvTtR~~ 292 (397)
+..++.++... ...+.......+.+.+..++.+|||||++... . +..+... . .+..+|+||+..
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~-~----~~~~iI~~t~~~ 174 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS-D----ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS-S----SCEEEEEECSST
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC-C----cceEEEEEECCC
Confidence 99988887321 23344666778888888777799999997532 1 2233222 1 578889998875
Q ss_pred hh----hhhh--ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcC---Cchh-HHHHHHHh--hc-
Q 041476 293 DV----CGLM--EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECS---GLPL-ALITTGRA--MS- 359 (397)
Q Consensus 293 ~v----~~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~---GlPL-ai~~~~~~--L~- 359 (397)
.. ...+ .....+.+.+++.++..++|.+.+.... ....-..+..+.|++.|+ |.|. ++..+-.. ++
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGL-IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTS-CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhc-ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 32 1111 1123899999999999999998763110 011112345678888888 9887 33333222 22
Q ss_pred --CCCChhHHHHHHHHHh
Q 041476 360 --SKKTPEEWSYAIQMLR 375 (397)
Q Consensus 360 --~~~~~~~w~~~~~~l~ 375 (397)
..-+.+.+..+++...
T Consensus 254 ~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHh
Confidence 1247788888776654
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=7.7e-14 Score=133.17 Aligned_cols=220 Identities=13% Similarity=0.068 Sum_probs=140.8
Q ss_pred CCccccchhhHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 153 QPTIVGLESTFDKVWRCLVE----GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
+..|+||+.+++.+.+++.. ...+.+.|+|++|+|||||++.+++........-...+|+++....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 36799999999999998873 45678999999999999999999987621100023567888777778888888888
Q ss_pred HhhCcc---cCCCHHHHHHHHHHHhc--CCcEEEEEecCCCc------hhhhhcCCCCCCC-CCCCcEEEEEcCChhhhh
Q 041476 229 ERIGWL---QNRSFEEKASGIFNLLS--KMKFLLLLDDIWER------IDLAKMGVPFPAS-SRNASKIVFTTRLVDVCG 296 (397)
Q Consensus 229 ~~l~~~---~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~------~~~~~l~~~l~~~-~~~gs~IlvTtR~~~v~~ 296 (397)
.+++.. ...+..+....+.+.+. +++.+|||||++.. ..+..+... +.. ...+..+|+||+......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~-~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRI-NSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHH-HHSCCC--EEEEEEESCGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhc-hhhcCCCeEEEEEEECCCChHh
Confidence 887653 22345566666766665 45899999999642 222222211 100 233566777887654322
Q ss_pred hhc-----c--CceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcC---CchhHHHHHH-Hhh--c---C
Q 041476 297 LME-----A--QKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECS---GLPLALITTG-RAM--S---S 360 (397)
Q Consensus 297 ~~~-----~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~---GlPLai~~~~-~~L--~---~ 360 (397)
.+. . ...+.+.+++.++..+++.+.+.... ....-..+..+.|++.++ |.|..+..+. ... + .
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 111 1 14799999999999999998653211 111223556778888887 9998443332 221 1 1
Q ss_pred --CCChhHHHHHHHHH
Q 041476 361 --KKTPEEWSYAIQML 374 (397)
Q Consensus 361 --~~~~~~w~~~~~~l 374 (397)
.-+.+.++.++..+
T Consensus 257 ~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEI 272 (386)
T ss_dssp CSSCCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHH
Confidence 13566666555443
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.49 E-value=3.5e-13 Score=128.74 Aligned_cols=218 Identities=16% Similarity=0.105 Sum_probs=141.5
Q ss_pred CccccchhhHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhccCC---CCCCeEEEEEeCCcCCHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVE----GQFGIIGLYGMGGVGKTTLLAQINNKFLHTP---NYFDIVIWVVVSKDMQLERIQQK 226 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~i~~~ 226 (397)
+.++||+.+++.+..++.. ...+.+.|+|++|+||||||+.+++...... +.-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6789999999999998843 4567899999999999999999998762100 11235678888888888999999
Q ss_pred HHHhhCcc---cCCCHHHHHHHHHHHhc--CCcEEEEEecCCCchh----hhhc---CCCCCCCC--CCCcEEEEEcCCh
Q 041476 227 IGERIGWL---QNRSFEEKASGIFNLLS--KMKFLLLLDDIWERID----LAKM---GVPFPASS--RNASKIVFTTRLV 292 (397)
Q Consensus 227 i~~~l~~~---~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~----~~~l---~~~l~~~~--~~gs~IlvTtR~~ 292 (397)
++.+++.. ...+..+....+...+. +++.+|||||++.... .+.+ ... .... ..+..+|.||+..
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~-~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRI-NQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHG-GGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhc-hhhcCCCceEEEEEEECCC
Confidence 99998764 23345666777777774 4689999999975321 1222 111 1111 3456777777765
Q ss_pred hhhh----h-hcc-C-ceeecCCCChHhHHHHHHHHhCC--ccCCCCCChHHHHHHHHHHcC---Cchh-HHHHHHHhh-
Q 041476 293 DVCG----L-MEA-Q-KTFKVECLADQDAWELFQKKVGE--ETLESHPDIPELAQTVANECS---GLPL-ALITTGRAM- 358 (397)
Q Consensus 293 ~v~~----~-~~~-~-~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~I~~~c~---GlPL-ai~~~~~~L- 358 (397)
.... . ... . ..+.+.+++.++..+++.+.+.. .....++ +..+.|++.++ |.|- ++..+....
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3211 1 111 1 47899999999999999987532 1112222 34677888887 9994 333332222
Q ss_pred -c---C--CCChhHHHHHHHHHh
Q 041476 359 -S---S--KKTPEEWSYAIQMLR 375 (397)
Q Consensus 359 -~---~--~~~~~~w~~~~~~l~ 375 (397)
+ + .-+.+.+..+++...
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHh
Confidence 1 1 136777777766554
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=2.9e-12 Score=122.46 Aligned_cols=196 Identities=13% Similarity=0.105 Sum_probs=135.7
Q ss_pred CccccchhhHHHHHHHHhc----CCce--EEEEEcCCCCcHHHHHHHHHhhhccCCCC-CCeEEEEEeCCcCCHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVE----GQFG--IIGLYGMGGVGKTTLLAQINNKFLHTPNY-FDIVIWVVVSKDMQLERIQQK 226 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~~GvGKTtLa~~v~~~~~~~~~~-f~~~~wv~vs~~~~~~~i~~~ 226 (397)
+.++||+.+++.+..++.. .... .+.|+|++|+|||||++.+++.. ... -...+|++++...+...++..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 5789999999999998865 2334 89999999999999999999987 222 235678888888888899999
Q ss_pred HHHhhCcc---cCCCHHHHHHHHHHHhc--CCcEEEEEecCCCc--hhhhhcCCCCCCC-CC---CCcEEEEEcCChhhh
Q 041476 227 IGERIGWL---QNRSFEEKASGIFNLLS--KMKFLLLLDDIWER--IDLAKMGVPFPAS-SR---NASKIVFTTRLVDVC 295 (397)
Q Consensus 227 i~~~l~~~---~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~--~~~~~l~~~l~~~-~~---~gs~IlvTtR~~~v~ 295 (397)
++..++.. ...+.......+...+. +++.+|||||++.. ..+..+... +.. .. .+..+|++|+.....
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~-~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRL-GQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHH-TTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHH-HHhCCCCCcCCEEEEEEECCchHH
Confidence 99988654 23355666666666664 56899999999653 333333222 211 11 367788887766432
Q ss_pred hhhc-------cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHc---------CCchhHHHHH
Q 041476 296 GLME-------AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANEC---------SGLPLALITT 354 (397)
Q Consensus 296 ~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c---------~GlPLai~~~ 354 (397)
..+. ....+.+.+++.++..+++...+.... ....-..+..+.|++.+ +|.|..+..+
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 2211 123699999999999999988764211 01122356678899999 7887554444
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.45 E-value=2.3e-12 Score=114.46 Aligned_cols=193 Identities=14% Similarity=0.138 Sum_probs=116.5
Q ss_pred CccccchhhHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQ-FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
..++||+..++.+..++..+. .+.+.|+|++|+||||||+.+++... ....+.. ..+. .... ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~~---~~~~---~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA---TPCG---VCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSCS---SCCS---CSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC---CCCc---ccHH-HHHHhccCC
Confidence 458999999999999997654 35889999999999999999998762 1111100 0000 0000 001110000
Q ss_pred cc------cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCC--chhhhhcCCCCCCCCCCCcEEEEEcCChhhh-h-h
Q 041476 233 WL------QNRSFEEKASGIFNLL-----SKMKFLLLLDDIWE--RIDLAKMGVPFPASSRNASKIVFTTRLVDVC-G-L 297 (397)
Q Consensus 233 ~~------~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~-~-~ 297 (397)
.. ...........+.+.+ .+++.+|||||++. ...++.+... +.....+..+|+||+..... . .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~-l~~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT-LEEPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHH-HHSCCTTEEEEEEESCGGGSCHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHH-HhcCCCceEEEEEeCChHhCCHHH
Confidence 00 0001111112222222 35689999999964 3445555433 33334567888888765431 1 1
Q ss_pred hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhh
Q 041476 298 MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAM 358 (397)
Q Consensus 298 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 358 (397)
......+++.+++.++..+++.+.+...... -..+..+.|++.|+|.|..+..+...+
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2234588999999999999999877533211 124567899999999999988876544
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.41 E-value=2.1e-12 Score=113.25 Aligned_cols=185 Identities=12% Similarity=0.099 Sum_probs=116.2
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCc
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGW 233 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (397)
..++|++..++.+.+++.....+.+.|+|++|+|||+||+.+++... ....-...+.+..+.......+...+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 45899999999999999877666699999999999999999998752 11111123344444433333222221111110
Q ss_pred ccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCChhhh--hhhccCceeecCCC
Q 041476 234 LQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLVDVC--GLMEAQKTFKVECL 309 (397)
Q Consensus 234 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~--~~~~~~~~~~l~~L 309 (397)
. ..-.+++.+|||||++.. ...+.+... +.....+..+|+||+..... ........+++.++
T Consensus 96 ~-------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~-l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~ 161 (226)
T 2chg_A 96 A-------------PIGGAPFKIIFLDEADALTADAQAALRRT-MEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPV 161 (226)
T ss_dssp C-------------CSTTCSCEEEEEETGGGSCHHHHHHHHHH-HHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred c-------------CCCccCceEEEEeChhhcCHHHHHHHHHH-HHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCC
Confidence 0 001257899999999753 333333322 22234467888888765421 11122347899999
Q ss_pred ChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHH
Q 041476 310 ADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGR 356 (397)
Q Consensus 310 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 356 (397)
+.++..+++.+.+...... -..+..+.|++.++|.|..+..+..
T Consensus 162 ~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 162 PKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp CHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999877432211 1245678899999999997655443
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=3.1e-11 Score=112.29 Aligned_cols=183 Identities=15% Similarity=0.160 Sum_probs=113.8
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFD-IVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
..++|++..++.+.+++..+..+.+.|+|++|+|||++|+.+++... ...+. ..+++..+.......+ .+++..+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 45899999999999999887666699999999999999999998852 11111 2344443333232221 11111111
Q ss_pred cccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCChhh-hh-hhccCceeecC
Q 041476 233 WLQNRSFEEKASGIFNLL-SKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLVDV-CG-LMEAQKTFKVE 307 (397)
Q Consensus 233 ~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~~v-~~-~~~~~~~~~l~ 307 (397)
.. ...+ .+++.+|||||++.. ..++.+... +.....++.+|+||....- .. .......+++.
T Consensus 98 ~~------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~-le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~ 164 (323)
T 1sxj_B 98 QK------------KLHLPPGKHKIVILDEADSMTAGAQQALRRT-MELYSNSTRFAFACNQSNKIIEPLQSQCAILRYS 164 (323)
T ss_dssp HB------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHH-HHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred hc------------cccCCCCCceEEEEECcccCCHHHHHHHHHH-HhccCCCceEEEEeCChhhchhHHHhhceEEeec
Confidence 00 0011 356899999999753 334444332 2222346778887766432 11 12234589999
Q ss_pred CCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhH-HHHHH
Q 041476 308 CLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLA-LITTG 355 (397)
Q Consensus 308 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa-i~~~~ 355 (397)
+++.++..+++...+...... -..+..+.|++.|+|.|.. +..+.
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVK---YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999998876432211 1245678899999999954 44443
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=3.3e-10 Score=105.48 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=113.7
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC-CeEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYF-DIVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
..++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++... ...+ ...+.+..+.......+ ...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~-~~~----- 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVI-REK----- 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH--GGGHHHHEEEEETTCHHHHHTT-HHH-----
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCceEEeeccccCchHHH-HHH-----
Confidence 45899999999999999887776799999999999999999998851 1111 12333333321111110 000
Q ss_pred cccCCCHHHHHHHHHH---HhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCChhh-hhh-hccCceee
Q 041476 233 WLQNRSFEEKASGIFN---LLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLVDV-CGL-MEAQKTFK 305 (397)
Q Consensus 233 ~~~~~~~~~~~~~l~~---~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~~v-~~~-~~~~~~~~ 305 (397)
...... ...+++.+||+||++.. ..++.+... +.....++++|+||....- ... ......+.
T Consensus 97 ----------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~-le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 97 ----------VKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRT-MEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp ----------HHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHH-HHHTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred ----------HHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHH-HHhcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 001111 11256889999999753 334444332 2222346788888776432 111 12234789
Q ss_pred cCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhh
Q 041476 306 VECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAM 358 (397)
Q Consensus 306 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 358 (397)
+.+++.++...++.+.+....... ..+..+.|++.++|.|..+..+...+
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGLEL---TEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCEE---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 999999999999988765332111 24567889999999998766554433
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.1e-09 Score=98.97 Aligned_cols=168 Identities=10% Similarity=0.046 Sum_probs=104.7
Q ss_pred ccccchhhHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCC--CC-C-eEEEEEeCCcCCHHHHHHH
Q 041476 155 TIVGLESTFDKVWRCLVE----GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPN--YF-D-IVIWVVVSKDMQLERIQQK 226 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~--~f-~-~~~wv~vs~~~~~~~i~~~ 226 (397)
.+.||++++++|...|.. +..+.+.|+|++|+|||++++.+++....... .. . ..+.+++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 478999999999887754 57788999999999999999999998732111 11 1 4567777777888999999
Q ss_pred HHHhhCcc--cCCCHHHHHHHHHHHh---cCCcEEEEEecCCCchhhhhcCCCCC--C-CCCCCcEEEEEcCChhh-hhh
Q 041476 227 IGERIGWL--QNRSFEEKASGIFNLL---SKMKFLLLLDDIWERIDLAKMGVPFP--A-SSRNASKIVFTTRLVDV-CGL 297 (397)
Q Consensus 227 i~~~l~~~--~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~l~--~-~~~~gs~IlvTtR~~~v-~~~ 297 (397)
|++++... ...........+...+ .+++++++||+++.....+-+... + + ......-||.++...+. ...
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l-~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYF-EKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHH-HHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHH-HhcccccCCcEEEEEEecCcccchhh
Confidence 99999654 1111222233333333 457899999999754321111111 1 0 11112233444433221 111
Q ss_pred h------cc-CceeecCCCChHhHHHHHHHHhC
Q 041476 298 M------EA-QKTFKVECLADQDAWELFQKKVG 323 (397)
Q Consensus 298 ~------~~-~~~~~l~~L~~~~~~~Lf~~~~~ 323 (397)
+ .. ...+.+.+++.++-.+++.+++.
T Consensus 180 L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 180 INIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 11 14689999999999999998763
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.99 E-value=4.3e-09 Score=97.46 Aligned_cols=180 Identities=10% Similarity=0.088 Sum_probs=112.9
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFD-IVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
..++|++..++.+.+++..+..+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~----------- 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGID----------- 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCTT-----------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccChH-----------
Confidence 35899999999999998877666699999999999999999998852 11111 22333433321111
Q ss_pred cccCCCHHHHHHHHHHH--h-cCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCChhh-h-hhhccCceee
Q 041476 233 WLQNRSFEEKASGIFNL--L-SKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLVDV-C-GLMEAQKTFK 305 (397)
Q Consensus 233 ~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~~v-~-~~~~~~~~~~ 305 (397)
............ + .+++.++|+||++.. ...+.+... +.....++.+|+||....- . ........++
T Consensus 84 -----~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~-le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~ 157 (319)
T 2chq_A 84 -----VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRT-MEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (319)
T ss_dssp -----TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGG-TSSSSSSEEEEEEESCGGGSCHHHHTTCEEEE
T ss_pred -----HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHH-HHhcCCCCeEEEEeCChhhcchHHHhhCeEEE
Confidence 011111111111 1 256889999999743 334445444 3333456778877765442 1 1122335889
Q ss_pred cCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 306 VECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 306 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
+.+++.++...++.+.+...... -..+..+.|++.++|.|..+....
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 158 FKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCCC---BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999998877543311 124557888999999998665443
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.95 E-value=1.5e-08 Score=95.95 Aligned_cols=190 Identities=13% Similarity=0.094 Sum_probs=109.8
Q ss_pred CccccchhhHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQ-FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
..++|++..++.+...+..+. .+.+.|+|++|+||||+|+.+++... ....+.. ..+... .....+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~~---~~~~~~----~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA---TPCGVC----DNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS-CTTCSCS---SCCSSS----HHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCCCCCC---CCCccc----HHHHHHhccCC
Confidence 358999999999999997765 35788999999999999999998762 1111100 000000 00111111000
Q ss_pred cc----------cCCCHHHHHHHHHHH-hcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCChh-hh-hh
Q 041476 233 WL----------QNRSFEEKASGIFNL-LSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLVD-VC-GL 297 (397)
Q Consensus 233 ~~----------~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~~-v~-~~ 297 (397)
.. .......+...+... ..+++.+|||||++.. ..++.+... +.....+..+|++|.... +. ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~-le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKT-LEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHH-HHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHH-HhcCCCceEEEEEeCChHhCcHHH
Confidence 00 011112211111110 1356789999999642 334444332 222234566776665443 21 12
Q ss_pred hccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 298 MEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 298 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
......+++.+++.++...++.+.+...... -..+..+.|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~---~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2234688999999999999998776432211 124557889999999999887654
No 20
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.86 E-value=2e-09 Score=91.60 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=41.7
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++||+.+++.+.+.+.....+.+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987777788999999999999999999886
No 21
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.80 E-value=4.3e-07 Score=84.23 Aligned_cols=192 Identities=15% Similarity=0.061 Sum_probs=114.3
Q ss_pred CccccchhhHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVE-----GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
..|+|++..+..+..++.. .....+.|+|++|+|||++|+.+++.. ... .++++++......++...
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~~-- 83 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAAI-- 83 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHHH--
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHHH--
Confidence 4689999999888887752 344678899999999999999999876 222 234444333222222111
Q ss_pred HhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch--hhhhcCCCC-------C-CC---------CCCCcEEEEEc
Q 041476 229 ERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI--DLAKMGVPF-------P-AS---------SRNASKIVFTT 289 (397)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l-------~-~~---------~~~gs~IlvTt 289 (397)
+... ..++.+|+|||+.... ....+...+ . .. ...+..+|.||
T Consensus 84 -----------------l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 84 -----------------LANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp -----------------HTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred -----------------HHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 1110 1356789999997531 222211000 0 00 01235566666
Q ss_pred CChh-hhh-hhc-cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhhcC------
Q 041476 290 RLVD-VCG-LME-AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRAMSS------ 360 (397)
Q Consensus 290 R~~~-v~~-~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~------ 360 (397)
.... +.. ... ....+.+.+++.++...++.+.+...... -..+..+.|++.|+|.|-.+..+...+..
T Consensus 146 ~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~ 222 (324)
T 1hqc_A 146 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR---ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAG 222 (324)
T ss_dssp SCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTS
T ss_pred CCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhc
Confidence 5433 211 111 13578999999999999998877543211 22466789999999999988776554421
Q ss_pred C--CChhHHHHHHHHH
Q 041476 361 K--KTPEEWSYAIQML 374 (397)
Q Consensus 361 ~--~~~~~w~~~~~~l 374 (397)
. -+.+....+...+
T Consensus 223 ~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 223 EEVITRERALEALAAL 238 (324)
T ss_dssp CSCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 1 2455566555544
No 22
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.80 E-value=8e-09 Score=91.45 Aligned_cols=171 Identities=10% Similarity=0.063 Sum_probs=101.4
Q ss_pred ccccc---hhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhh
Q 041476 155 TIVGL---ESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERI 231 (397)
Q Consensus 155 ~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l 231 (397)
.|+|. +..++.+..++.....+.+.|+|++|+||||||+.+++... .....+.|+.++..... +.+.+
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~------~~~~~ 99 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI------STALL 99 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS------CGGGG
T ss_pred hccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH------HHHHH
Confidence 46663 35556666666555678899999999999999999998872 22334566665432110 00000
Q ss_pred CcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch--h--hhhcCCCCCC--CCCCCcEEEEEcCChh---------hhh
Q 041476 232 GWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI--D--LAKMGVPFPA--SSRNASKIVFTTRLVD---------VCG 296 (397)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~--~~~l~~~l~~--~~~~gs~IlvTtR~~~---------v~~ 296 (397)
+.+ .++.+|||||++... . .+.+... +. ......++|+||+... ...
T Consensus 100 ----------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~-l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~ 161 (242)
T 3bos_A 100 ----------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDL-YNRVAEQKRGSLIVSASASPMEAGFVLPDLVS 161 (242)
T ss_dssp ----------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHH-HHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH
T ss_pred ----------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHH-HHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh
Confidence 011 346799999996431 1 2222111 10 0111224777766432 112
Q ss_pred hhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 297 LMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 297 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
.+.....+++.+++.++..+++.+.+..... .-..+..+.|++.|+|.+-.+..+.
T Consensus 162 r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 162 RMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 2223368899999999999999987743221 1234667889999999887765543
No 23
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.79 E-value=1.7e-08 Score=97.94 Aligned_cols=199 Identities=16% Similarity=0.110 Sum_probs=114.3
Q ss_pred ccc-cchhh--HHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC--CeEEEEEeCCcCCHHHHHHHHH
Q 041476 155 TIV-GLEST--FDKVWRCLVEGQ-FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYF--DIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 155 ~~v-Gr~~~--~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f--~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
.|+ |.... ...+........ ...+.|+|++|+||||||+.+++... ..+ ..+++++.+ .+..++.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~---~~~~~~~v~~v~~~------~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV---QNEPDLRVMYITSE------KFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH---HHCCSSCEEEEEHH------HHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HhCCCCeEEEeeHH------HHHHHHH
Confidence 355 64433 333444433333 67899999999999999999998762 222 134455432 3334444
Q ss_pred HhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch----hhhhcCCCCCC-CCCCCcEEEEEcCChh---------h
Q 041476 229 ERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI----DLAKMGVPFPA-SSRNASKIVFTTRLVD---------V 294 (397)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----~~~~l~~~l~~-~~~~gs~IlvTtR~~~---------v 294 (397)
..+... .. ..+...+..++.+|+|||++... ..+.+... +. ....|..||+||.... +
T Consensus 177 ~~~~~~---~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~-l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 177 DSMKEG---KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHT-FNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHHHTT---CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHH-HHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHHHcc---cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHH-HHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 433221 11 12333444467899999996432 22223222 10 0134677888887632 2
Q ss_pred hhhhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHh------hcCC-CChhHH
Q 041476 295 CGLMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRA------MSSK-KTPEEW 367 (397)
Q Consensus 295 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~------L~~~-~~~~~w 367 (397)
...+.....+.+.+++.++...++.+.+.......++ +..+.|++.+.|.+-.+.-+... +.+. -+.+.+
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~ 325 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEA 325 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 2334445688999999999999999887433222332 34678899999988655433221 1222 366777
Q ss_pred HHHHHH
Q 041476 368 SYAIQM 373 (397)
Q Consensus 368 ~~~~~~ 373 (397)
+.++..
T Consensus 326 ~~~l~~ 331 (440)
T 2z4s_A 326 ILLLKD 331 (440)
T ss_dssp HHHTST
T ss_pred HHHHHH
Confidence 766543
No 24
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=3e-08 Score=93.23 Aligned_cols=192 Identities=11% Similarity=0.150 Sum_probs=109.6
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFD-IVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
..++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++... ....+. ....+..+.......+ .+....+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY-GPDLMKSRILELNASDERGISIV-REKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH-HHHHHTTSEEEECSSSCCCHHHH-TTHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC-CCcccccceEEEccccccchHHH-HHHHHHHh
Confidence 45899999999999999877655689999999999999999988751 000111 2233333332222222 11111111
Q ss_pred cc-cCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCChh-hhhh-hccCceeecC
Q 041476 233 WL-QNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLVD-VCGL-MEAQKTFKVE 307 (397)
Q Consensus 233 ~~-~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~~-v~~~-~~~~~~~~l~ 307 (397)
.. ....... .....-.+++-+|++|++... .....+... +.......++|++|.... +... ......+.+.
T Consensus 115 ~~~~~~~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~-le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~ 190 (353)
T 1sxj_D 115 RLTVSKPSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRT-METYSGVTRFCLICNYVTRIIDPLASQCSKFRFK 190 (353)
T ss_dssp HSCCCCCCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHH-HHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECC
T ss_pred hhcccccchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHH-HHhcCCCceEEEEeCchhhCcchhhccCceEEeC
Confidence 00 0000000 000111235579999998642 223333222 212223466776665433 2111 1223478999
Q ss_pred CCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 308 CLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 308 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
+++.++....+.+.+...... -..+..+.|++.++|.|-.+..+
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVK---CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999998876433211 22466889999999999875444
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.75 E-value=6.2e-08 Score=88.31 Aligned_cols=199 Identities=17% Similarity=0.165 Sum_probs=113.2
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCH
Q 041476 154 PTIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQL 220 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 220 (397)
..++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. ... .+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHHH-
Confidence 4689999999999887642 345679999999999999999999886 222 22233221110
Q ss_pred HHHHHHHHHhhCcccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCc----------------hhhhhcCCCC-CCCCCCC
Q 041476 221 ERIQQKIGERIGWLQNRSFEEKASG-IFNLLSKMKFLLLLDDIWER----------------IDLAKMGVPF-PASSRNA 282 (397)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~-l~~~L~~kr~LlVlDdv~~~----------------~~~~~l~~~l-~~~~~~g 282 (397)
............ +......++.+|+|||++.. ..+..+...+ ......+
T Consensus 90 -------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 90 -------------KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp -------------CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred -------------hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 000011111222 22233456789999999532 0111111100 0022345
Q ss_pred cEEEEEcCChhhhh--hh---ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCC-chhHHHHHH-
Q 041476 283 SKIVFTTRLVDVCG--LM---EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSG-LPLALITTG- 355 (397)
Q Consensus 283 s~IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~~~- 355 (397)
..||.||....... .. .....+.+.+.+.++..++|...+.......+.. ...|++.+.| .|-.|..+.
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHHHHH
Confidence 67788887654321 11 1234789999999999999998875443222222 4677788887 453443332
Q ss_pred -----HhhcCC--CChhHHHHHHHHHhc
Q 041476 356 -----RAMSSK--KTPEEWSYAIQMLRR 376 (397)
Q Consensus 356 -----~~L~~~--~~~~~w~~~~~~l~~ 376 (397)
...+.. -+.+....+++.+..
T Consensus 233 ~a~~~a~~~~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 233 EAGMNAIRELRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcCCHHHHHHHHHHHHh
Confidence 112222 366777777766543
No 26
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.74 E-value=2.3e-07 Score=89.86 Aligned_cols=176 Identities=16% Similarity=0.167 Sum_probs=105.8
Q ss_pred CccccchhhH---HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-CCHHHHHHHHHH
Q 041476 154 PTIVGLESTF---DKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD-MQLERIQQKIGE 229 (397)
Q Consensus 154 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~i~~~i~~ 229 (397)
..++|.+..+ ..|...+..+..+.+.|+|++|+||||||+.+++.. ...| +.++.. ....++ +.++.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f-----~~l~a~~~~~~~i-r~~~~ 96 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV-----ERISAVTSGVKEI-REAIE 96 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE-----EEEETTTCCHHHH-HHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe-----EEEEeccCCHHHH-HHHHH
Confidence 4579998888 778888888888889999999999999999999886 2222 222221 122221 11111
Q ss_pred hhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEE-EEcCChhh---hhhhccCce
Q 041476 230 RIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIV-FTTRLVDV---CGLMEAQKT 303 (397)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Il-vTtR~~~v---~~~~~~~~~ 303 (397)
.. ......+++.+|+||++... ...+.+... +.. + ...+| .||.+... ........+
T Consensus 97 ~a--------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~-le~-~-~v~lI~att~n~~~~l~~aL~sR~~v 159 (447)
T 3pvs_A 97 RA--------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPH-IED-G-TITFIGATTENPSFELNSALLSRARV 159 (447)
T ss_dssp HH--------------HHHHHTTCCEEEEEETTTCC------CCHHH-HHT-T-SCEEEEEESSCGGGSSCHHHHTTEEE
T ss_pred HH--------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHH-Hhc-C-ceEEEecCCCCcccccCHHHhCceeE
Confidence 10 01112467899999999753 233333322 221 1 23333 45555432 122233457
Q ss_pred eecCCCChHhHHHHHHHHhCCccC----CCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 304 FKVECLADQDAWELFQKKVGEETL----ESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 304 ~~l~~L~~~~~~~Lf~~~~~~~~~----~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
+.+.+++.++...++.+.+..... ....-..+..+.|++.++|.+-.+..+.
T Consensus 160 ~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 160 YLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp EECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 899999999999999988643110 0111234567889999999887665544
No 27
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.70 E-value=1.2e-06 Score=81.68 Aligned_cols=172 Identities=16% Similarity=0.073 Sum_probs=101.9
Q ss_pred CccccchhhHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVE-----GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
..++|++..++.+..++.. ...+.+.|+|++|+|||+||+.+++.. ...| +.++++.......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~------ 96 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGD------ 96 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhH------
Confidence 4689999999998888763 345678999999999999999998876 2222 2333322211111
Q ss_pred HhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCC-----------------CCCCCCCcEEEEEc
Q 041476 229 ERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPF-----------------PASSRNASKIVFTT 289 (397)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l-----------------~~~~~~gs~IlvTt 289 (397)
....+.. ..+..+|+||++... .....+...+ .....++..+|.+|
T Consensus 97 -------------~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 97 -------------LAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp -------------HHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred -------------HHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 1111111 245678999998742 1111111100 00111235566655
Q ss_pred CChhh-hh-hhc-cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 290 RLVDV-CG-LME-AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 290 R~~~v-~~-~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
..... .. ... ....+.+.+++.++...++.+.+..... .-..+..+.|++.+.|.|-.+..+.
T Consensus 162 n~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 162 TRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 54332 11 111 2357899999999999999887643221 1124567889999999996554443
No 28
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.70 E-value=4.8e-07 Score=81.87 Aligned_cols=197 Identities=18% Similarity=0.115 Sum_probs=106.8
Q ss_pred CccccchhhHHHHHH-------HHh---cCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHH
Q 041476 154 PTIVGLESTFDKVWR-------CLV---EGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERI 223 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~-------~L~---~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i 223 (397)
..++|....++.+.. .+. ....+.+.|+|++|+|||+||+.+++.. ...| +.+..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~~----- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDKM----- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGGC-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHHh-----
Confidence 346788777666665 232 2356789999999999999999999986 2222 222222210
Q ss_pred HHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc-----------hh-hhhcCCCC--CCCCCCCcEEEEEc
Q 041476 224 QQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER-----------ID-LAKMGVPF--PASSRNASKIVFTT 289 (397)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----------~~-~~~l~~~l--~~~~~~gs~IlvTt 289 (397)
.+.............+......++.+|+|||++.. .. +..+...+ .........||.||
T Consensus 102 -------~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 102 -------IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp -------TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred -------cCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 00000000011122223333467899999998532 11 12121110 11122334567777
Q ss_pred CChhhhhh---hc-cCceeecCCCCh-HhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCC------chhHHHHHHHhh
Q 041476 290 RLVDVCGL---ME-AQKTFKVECLAD-QDAWELFQKKVGEETLESHPDIPELAQTVANECSG------LPLALITTGRAM 358 (397)
Q Consensus 290 R~~~v~~~---~~-~~~~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G------lPLai~~~~~~L 358 (397)
........ .+ ....+.+.+++. ++...++.+.. .. ..+....|++.+.| ++-++..+-..
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-----~~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a- 245 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-----NF---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMS- 245 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-----CS---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHH-
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-----CC---CHHHHHHHHHHhcCCCccccHHHHHHHHHHH-
Confidence 76654322 11 145688899988 66666665532 11 24457889999988 34444443332
Q ss_pred cCCCChhHHHHHHHHHhcc
Q 041476 359 SSKKTPEEWSYAIQMLRRS 377 (397)
Q Consensus 359 ~~~~~~~~w~~~~~~l~~~ 377 (397)
....+...+..++..+...
T Consensus 246 ~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 246 LQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp TTSCGGGHHHHHHHHHHHT
T ss_pred hhhchHHHHHHHHHHHHHc
Confidence 2224556788877777654
No 29
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=3.8e-08 Score=92.63 Aligned_cols=195 Identities=9% Similarity=0.073 Sum_probs=104.9
Q ss_pred CccccchhhHHHHHHHH-hcCCceEEEEEcCCCCcHHHHHHHHHhhhccC-CC--CCCe--------------------E
Q 041476 154 PTIVGLESTFDKVWRCL-VEGQFGIIGLYGMGGVGKTTLLAQINNKFLHT-PN--YFDI--------------------V 209 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~-~~--~f~~--------------------~ 209 (397)
..++|.+..++.+.+++ ..+..+.+.|+|++|+||||+++.++...... .+ .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 45899999999999988 66555559999999999999999998854111 00 0110 1
Q ss_pred EEEEeCCcC-CHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEE
Q 041476 210 IWVVVSKDM-QLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIV 286 (397)
Q Consensus 210 ~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~Il 286 (397)
+.+..+... ......++++..+..... ..... .+.. +.+++-++|||++... ...+.+... +.....++.+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~-le~~~~~~~~I 168 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ--VDFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRT-MEKYSKNIRLI 168 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC----------------CCEEEEEECTTSSCHHHHHHHHHH-HHHSTTTEEEE
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc--ccccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHH-HHhhcCCCEEE
Confidence 111111100 000012222222211000 00000 0000 2346779999999753 222333222 11112356777
Q ss_pred EEcCChh-hhh-hhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHH
Q 041476 287 FTTRLVD-VCG-LMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTG 355 (397)
Q Consensus 287 vTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 355 (397)
++|.... +.. .......+++.+++.++....+.+.+.......+ ..+..+.|++.++|.+-.+..+.
T Consensus 169 l~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 169 MVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 7776533 222 2223468899999999999999887643221111 02457889999999987765554
No 30
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.67 E-value=6.7e-07 Score=80.19 Aligned_cols=180 Identities=15% Similarity=0.142 Sum_probs=98.8
Q ss_pred CccccchhhHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCLV---E---------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
.+++|.+..++.+.+.+. . ...+.+.|+|++|+|||++|+.+++.. ... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHhh-
Confidence 457999887777766542 1 234568899999999999999999987 222 233444322110
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch-----------------hhhhcCCCCCC-CCCCCc
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI-----------------DLAKMGVPFPA-SSRNAS 283 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----------------~~~~l~~~l~~-~~~~gs 283 (397)
.. ..........+.......+.+|+|||++... .+..+...+-. ....+.
T Consensus 79 ---------~~---~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 146 (262)
T 2qz4_A 79 ---------IG---GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146 (262)
T ss_dssp ---------ST---THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE
T ss_pred ---------cc---ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE
Confidence 00 0001111222222333567999999997530 11111111000 112355
Q ss_pred EEEEEcCChhhh-h-hhc---cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchh-HHHHH
Q 041476 284 KIVFTTRLVDVC-G-LME---AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPL-ALITT 354 (397)
Q Consensus 284 ~IlvTtR~~~v~-~-~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 354 (397)
.||.||...... . ... ....+.+.+.+.++..+++.+.+.... ...........+++.+.|.+- .|..+
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK--LTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT--CCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC--CCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 677777654421 1 111 235678899999999999988764322 112222235788999998754 44433
No 31
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=1.1e-07 Score=94.35 Aligned_cols=186 Identities=11% Similarity=0.073 Sum_probs=106.6
Q ss_pred CccccchhhHHHHHHHHhc-----------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 041476 154 PTIVGLESTFDKVWRCLVE-----------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK 216 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 216 (397)
..++|++..++.+.+++.. +..+.+.|+|++|+||||+|+.+++.. . + ..+.++++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCCC
Confidence 4689999999999999865 134789999999999999999999886 1 1 234445554
Q ss_pred cCCHHHHHHHHHHhhCcccCCCHHHHHHHHHH--HhcCCcEEEEEecCCCch-----hhhhcCCCCCCCCCCCcEEEEEc
Q 041476 217 DMQLERIQQKIGERIGWLQNRSFEEKASGIFN--LLSKMKFLLLLDDIWERI-----DLAKMGVPFPASSRNASKIVFTT 289 (397)
Q Consensus 217 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~--~L~~kr~LlVlDdv~~~~-----~~~~l~~~l~~~~~~gs~IlvTt 289 (397)
..... ++...+...... .+.......... ...+++.+|+||+++... .+..+... +.. .+..||+++
T Consensus 113 ~~~~~-~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~-l~~--~~~~iIli~ 186 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDN--MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQF-CRK--TSTPLILIC 186 (516)
T ss_dssp CCCHH-HHHHTGGGGTTB--CCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHH-HHH--CSSCEEEEE
T ss_pred cchHH-HHHHHHHHHhcc--ccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHH-HHh--cCCCEEEEE
Confidence 44433 223222222111 000000000000 123578899999996421 11222211 111 123355544
Q ss_pred CChh---hhhhhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCc-hhHHHHH
Q 041476 290 RLVD---VCGLMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGL-PLALITT 354 (397)
Q Consensus 290 R~~~---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~ 354 (397)
.... ..........+.+.+++.++..+++.+.+.......++ +....|++.++|. +-++..+
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 4322 22222234578999999999999998876543322332 3477899999994 4455544
No 32
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.63 E-value=4e-07 Score=84.59 Aligned_cols=181 Identities=11% Similarity=0.042 Sum_probs=104.1
Q ss_pred CccccchhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC
Q 041476 154 PTIVGLESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG 232 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (397)
+.++|.+..+..+.+++..+.. +++.+.|++|+|||++|+.+++.. . ...+.++.+.. ....+ ...+....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~i-~~~~~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDFV-RGPLTNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHHH-HTHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHHH-HHHHHHHH
Confidence 4689999999999999987654 577888889999999999999886 1 22344444332 22211 11111100
Q ss_pred cccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch---hhhhcCCCCCCCCCCCcEEEEEcCChhh-h-hhhccCceeecC
Q 041476 233 WLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI---DLAKMGVPFPASSRNASKIVFTTRLVDV-C-GLMEAQKTFKVE 307 (397)
Q Consensus 233 ~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~~l~~~l~~~~~~gs~IlvTtR~~~v-~-~~~~~~~~~~l~ 307 (397)
.. ..+.+++.+|+|||++... ..+.+... +.....+..+|+||....- . ........+++.
T Consensus 98 ~~-------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~-le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~ 163 (324)
T 3u61_B 98 SA-------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSF-MEAYSSNCSIIITANNIDGIIKPLQSRCRVITFG 163 (324)
T ss_dssp HB-------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHH-HHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECC
T ss_pred hh-------------cccCCCCeEEEEECCcccCcHHHHHHHHHH-HHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeC
Confidence 00 0012477899999998643 33333222 2111234677777765442 1 111223578999
Q ss_pred CCChHhHHHHHHH-------HhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHhh
Q 041476 308 CLADQDAWELFQK-------KVGEETLESHPDIPELAQTVANECSGLPLALITTGRAM 358 (397)
Q Consensus 308 ~L~~~~~~~Lf~~-------~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 358 (397)
+++.++-.+++.. .+.......++ .+..+.|++.++|.+-.+......+
T Consensus 164 ~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 164 QPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9998885443322 22222211111 2667889999999877554444333
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.61 E-value=1.8e-07 Score=86.24 Aligned_cols=152 Identities=13% Similarity=0.156 Sum_probs=85.8
Q ss_pred ccccchhhHHHHHHHHh---------------cCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCC
Q 041476 155 TIVGLESTFDKVWRCLV---------------EGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQ 219 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 219 (397)
.++|.+..++.|.+.+. ......+.|+|++|+|||++|+.+++... ........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH-RLGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHH-HTTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH-hcCCcCCCcEEEEcHH--
Confidence 47899888888876653 23445789999999999999998888762 1222211123333211
Q ss_pred HHHHHHHHHHhhCcc-cCCCHHHHHHHHHHHhcCCcEEEEEecCCCc-----------hhhhhcCCCCCCCCCCCcEEEE
Q 041476 220 LERIQQKIGERIGWL-QNRSFEEKASGIFNLLSKMKFLLLLDDIWER-----------IDLAKMGVPFPASSRNASKIVF 287 (397)
Q Consensus 220 ~~~i~~~i~~~l~~~-~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~gs~Ilv 287 (397)
.+... ...........+.. .+..+|+||+++.. .....+... +.....+..+|+
T Consensus 109 ----------~l~~~~~g~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~-l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ----------DLVGQYIGHTAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQV-MENNRDDLVVIL 174 (309)
T ss_dssp ----------GTCCSSTTCHHHHHHHHHHH---HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHH-HHHCTTTCEEEE
T ss_pred ----------HhhhhcccccHHHHHHHHHh---cCCCEEEEEChhhhccCCCcccccHHHHHHHHHH-HhcCCCCEEEEE
Confidence 01000 01111111111211 14569999999732 222333322 223334567777
Q ss_pred EcCChhhhhh-------h-ccCceeecCCCChHhHHHHHHHHhC
Q 041476 288 TTRLVDVCGL-------M-EAQKTFKVECLADQDAWELFQKKVG 323 (397)
Q Consensus 288 TtR~~~v~~~-------~-~~~~~~~l~~L~~~~~~~Lf~~~~~ 323 (397)
||........ . .....+.+.+++.++...++.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 7765432110 1 1226789999999999999988764
No 34
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.60 E-value=3.8e-07 Score=86.26 Aligned_cols=211 Identities=12% Similarity=0.054 Sum_probs=110.7
Q ss_pred CccccchhhHHH---HHHHHhcCCc--eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC----CcCCHHHHH
Q 041476 154 PTIVGLESTFDK---VWRCLVEGQF--GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVS----KDMQLERIQ 224 (397)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~~~--~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs----~~~~~~~i~ 224 (397)
+.|+|++..+.. +.+.+..+.. +.+.|+|++|+|||++|+.+++.. . .... .+.+... ......+.+
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~--~~~~-~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL-G--PDTP-FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH-C--SSCC-EEEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh-c--ccCC-cccccchhhhhcccchhHHH
Confidence 468999988766 4555555433 589999999999999999999987 2 2111 1222221 222333444
Q ss_pred HHHHHhhCc-------------------------------c-cCCCHHHHHHHHHHHh-----cCC----cEEEEEecCC
Q 041476 225 QKIGERIGW-------------------------------L-QNRSFEEKASGIFNLL-----SKM----KFLLLLDDIW 263 (397)
Q Consensus 225 ~~i~~~l~~-------------------------------~-~~~~~~~~~~~l~~~L-----~~k----r~LlVlDdv~ 263 (397)
......... . ...........+.... .++ +.+|+||++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 433332110 0 0000122222222221 133 4699999997
Q ss_pred Cc--hhhhhcCCCCCCCCCCCcEEEEEcC-C------------hhh-hhhhccCceeecCCCChHhHHHHHHHHhCCccC
Q 041476 264 ER--IDLAKMGVPFPASSRNASKIVFTTR-L------------VDV-CGLMEAQKTFKVECLADQDAWELFQKKVGEETL 327 (397)
Q Consensus 264 ~~--~~~~~l~~~l~~~~~~gs~IlvTtR-~------------~~v-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 327 (397)
.. ...+.+... +...... .++++|. . ..+ .........+.+.+++.++...++.+.+.....
T Consensus 200 ~l~~~~~~~L~~~-le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 200 MLDIESFSFLNRA-LESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp GSBHHHHHHHHHH-TTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred ccChHHHHHHHHH-hhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 53 223333222 2222222 2333332 1 111 111122245799999999999999987743221
Q ss_pred CCCCChHHHHHHHHHHcC-CchhHHHHHHHh------hcCC--CChhHHHHHHHH
Q 041476 328 ESHPDIPELAQTVANECS-GLPLALITTGRA------MSSK--KTPEEWSYAIQM 373 (397)
Q Consensus 328 ~~~~~~~~~~~~I~~~c~-GlPLai~~~~~~------L~~~--~~~~~w~~~~~~ 373 (397)
.-..+..+.|++.+. |.|-.+..+... .... -+.+..+.+++.
T Consensus 278 ---~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 278 ---EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp ---CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 122456788999997 777655443321 1122 255666665543
No 35
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.59 E-value=4.4e-06 Score=77.48 Aligned_cols=179 Identities=13% Similarity=0.135 Sum_probs=101.3
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCLVE------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
.+++|.+..++.|.+.+.- ...+.+.|+|++|+|||+||+.+++.. . .. ..+.++.+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC---cEEEEEhHHHHh--
Confidence 4678999888888776631 134679999999999999999999876 1 11 122333332110
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCch-------------hhhhcCCCC--CCCCCCCcEE
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFN-LLSKMKFLLLLDDIWERI-------------DLAKMGVPF--PASSRNASKI 285 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~-------------~~~~l~~~l--~~~~~~gs~I 285 (397)
...... ......+.. .-..++.+|+||+++... ....+...+ +.....+..|
T Consensus 85 -----------~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 85 -----------KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp -----------SSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred -----------hhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 001111 222222222 224578999999997420 011111100 1112344556
Q ss_pred EEEcCChhhh-h-hh-ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCc-hhHHHHH
Q 041476 286 VFTTRLVDVC-G-LM-EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGL-PLALITT 354 (397)
Q Consensus 286 lvTtR~~~v~-~-~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~ 354 (397)
|.||...... . .. .....+.+...+.++..++|...+...... -.....+.|++.+.|. +-.|..+
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS---LTEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC---CCHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 6666544321 1 11 233567888899999999998877543211 1234578899999987 4334444
No 36
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.55 E-value=2.9e-06 Score=79.87 Aligned_cols=179 Identities=15% Similarity=0.050 Sum_probs=101.9
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCLVE------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
.+++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. .. ..+.++++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhcc-
Confidence 4589999999998887642 345689999999999999999999876 22 2334444322110
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCc-------------hhhhhcCCCC---CCCCCCCcE
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFN-LLSKMKFLLLLDDIWER-------------IDLAKMGVPF---PASSRNASK 284 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~-------------~~~~~l~~~l---~~~~~~gs~ 284 (397)
...........+.. .-..++.+|+||+++.. .....+...+ ......+..
T Consensus 157 -------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 157 -------------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred -------------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 00011111222222 22356799999999421 0111221110 111223455
Q ss_pred EEEEcCChhh-hhhh--ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCC-chhHHHHHH
Q 041476 285 IVFTTRLVDV-CGLM--EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSG-LPLALITTG 355 (397)
Q Consensus 285 IlvTtR~~~v-~~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~~~ 355 (397)
||.||..... ...+ .....+.+...+.++..+++...+...... -.....+.|++.+.| .|-.|..+.
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC---LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666654332 1111 123467888899999999998876432211 124567889999998 455555543
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.54 E-value=2.7e-06 Score=78.97 Aligned_cols=178 Identities=14% Similarity=0.139 Sum_probs=102.3
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCLVE------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
.+++|.+..++.|.+.+.- ...+.+.|+|++|+|||+||+.+++.. ...| +.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~---~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEE---EEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCE---EEEchH------
Confidence 4589999999999887721 134578999999999999999999986 2222 223221
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHH-hcCCcEEEEEecCCCchh-------------hhhcCCCC--CCCCCCCcEE
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNL-LSKMKFLLLLDDIWERID-------------LAKMGVPF--PASSRNASKI 285 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~-------------~~~l~~~l--~~~~~~gs~I 285 (397)
++ ..... .........+... -..++.+|+||+++.... ...+...+ +.....+..|
T Consensus 86 ~l----~~~~~----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 86 DL----VSKWM----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp HH----HTTTG----GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred HH----hhccc----chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 11 11100 0112222222222 235678999999964210 11111110 1122345666
Q ss_pred EEEcCChhhhh-hh--ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCc-hhHHHHH
Q 041476 286 VFTTRLVDVCG-LM--EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGL-PLALITT 354 (397)
Q Consensus 286 lvTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~ 354 (397)
|.||....... .+ .....+.+...+.++-.++|...+..... .-.......|++.+.|. +-.|..+
T Consensus 158 i~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 158 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp EEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTCCHHHHHHH
T ss_pred EEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 66776543311 11 23456788889999999999988754321 11234568899999884 4344433
No 38
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.52 E-value=3.6e-06 Score=77.30 Aligned_cols=174 Identities=14% Similarity=0.129 Sum_probs=99.2
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCH
Q 041476 154 PTIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQL 220 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 220 (397)
.+++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. ... ++.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~-----~i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE-----EEEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC-----EEEEE----h
Confidence 4589999888888877642 245679999999999999999999986 221 22222 2
Q ss_pred HHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch----------------hhhhcCCCCC-CCCCCCc
Q 041476 221 ERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI----------------DLAKMGVPFP-ASSRNAS 283 (397)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------------~~~~l~~~l~-~~~~~gs 283 (397)
.++..... +. ........+.......+.+|+||+++... ....+...+- .....+.
T Consensus 83 ~~l~~~~~---g~----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v 155 (301)
T 3cf0_A 83 PELLTMWF---GE----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 155 (301)
T ss_dssp HHHHHHHH---TT----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSE
T ss_pred HHHHhhhc---Cc----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCE
Confidence 23332221 11 11112222333334578999999997311 0111111100 0123356
Q ss_pred EEEEEcCChhhh-h-hhc---cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhH
Q 041476 284 KIVFTTRLVDVC-G-LME---AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLA 350 (397)
Q Consensus 284 ~IlvTtR~~~v~-~-~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 350 (397)
.||.||...... . ... ....+.+...+.++-.+++...+.......+.. ...+++.+.|.|=+
T Consensus 156 ~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 156 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred EEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 677777655432 1 111 234788999999999999988775433222222 34556677776643
No 39
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.52 E-value=5e-06 Score=76.04 Aligned_cols=178 Identities=13% Similarity=0.101 Sum_probs=100.7
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCLVE------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
..++|.+..++.+.+.+.. ...+.+.|+|++|+|||++|+.+++.. ... .+.++++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SAT---FLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCE---EEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEeeHHHHhh--
Confidence 4689999999998887632 235688999999999999999999876 222 23334332111
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHH-HHhcCCcEEEEEecCCCchh-------------hhhcCCCC--CCC--CCCCc
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIF-NLLSKMKFLLLLDDIWERID-------------LAKMGVPF--PAS--SRNAS 283 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~-~~L~~kr~LlVlDdv~~~~~-------------~~~l~~~l--~~~--~~~gs 283 (397)
............+. .....++.+|+||++..... ...+...+ ++. .+.+.
T Consensus 93 ------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 93 ------------KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp ------------SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred ------------cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 00111222222222 22345778999999954210 00110000 111 12345
Q ss_pred EEEEEcCChhhh-hh-h-ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchh-HHHHH
Q 041476 284 KIVFTTRLVDVC-GL-M-EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPL-ALITT 354 (397)
Q Consensus 284 ~IlvTtR~~~v~-~~-~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 354 (397)
.||.||...... .. . .....+.+...+.++...++...+..... .-.....+.|++.+.|.+- .+..+
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 666677654321 11 0 23356777888888888888877643221 1123457889999999886 45444
No 40
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.50 E-value=3.6e-06 Score=79.16 Aligned_cols=177 Identities=15% Similarity=0.156 Sum_probs=99.9
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCLVE------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
.+++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. ...| +.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~---~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEE---EEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEeeHH------
Confidence 4589999999988887631 123568899999999999999999987 2222 222221
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCchh-------------hhhcCCCC--CCCCCCCcEE
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFN-LLSKMKFLLLLDDIWERID-------------LAKMGVPF--PASSRNASKI 285 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~-------------~~~l~~~l--~~~~~~gs~I 285 (397)
++. ... .... ......+.. .-..++.+|+||+++.... ...+...+ +.....+..|
T Consensus 119 ~l~----~~~---~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 119 DLV----SKW---MGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HHH----SCC------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred HHh----hhh---cchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 111 111 0111 122222222 2235789999999974210 11111110 1112335566
Q ss_pred EEEcCChhhh-h-hh-ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCc-hhHHHH
Q 041476 286 VFTTRLVDVC-G-LM-EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGL-PLALIT 353 (397)
Q Consensus 286 lvTtR~~~v~-~-~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~ 353 (397)
|.||...... . .. .....+.+...+.++..++|...+....... .......|++.+.|. |-.|..
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~ 259 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAV 259 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHH
Confidence 6666654321 1 11 2345678889999999999998875432111 234568899999984 433433
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.49 E-value=1e-06 Score=81.78 Aligned_cols=165 Identities=20% Similarity=0.175 Sum_probs=92.9
Q ss_pred HHHHHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHH
Q 041476 163 FDKVWRCLVEG--QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFE 240 (397)
Q Consensus 163 ~~~l~~~L~~~--~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (397)
...+...+... ....+.|+|++|+||||||+.+++..... -...++++. .++...+...+.. ....
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~------~~~~~~~~~~~~~---~~~~ 90 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSA------DDFAQAMVEHLKK---GTIN 90 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEH------HHHHHHHHHHHHH---TCHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEH------HHHHHHHHHHHHc---CcHH
Confidence 34444444443 34689999999999999999999987211 123345543 2333333333321 1111
Q ss_pred HHHHHHHHHhcCCcEEEEEecCCCch----hhhhcCCCCCC-CCCCCcEEEEEcCChh---------hhhhhccCceeec
Q 041476 241 EKASGIFNLLSKMKFLLLLDDIWERI----DLAKMGVPFPA-SSRNASKIVFTTRLVD---------VCGLMEAQKTFKV 306 (397)
Q Consensus 241 ~~~~~l~~~L~~kr~LlVlDdv~~~~----~~~~l~~~l~~-~~~~gs~IlvTtR~~~---------v~~~~~~~~~~~l 306 (397)
. +...+ .++.+|+|||+.... ....+... +. ....+..||+|+.... ....+.....+++
T Consensus 91 ~----~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~-l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l 164 (324)
T 1l8q_A 91 E----FRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHI-FNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEI 164 (324)
T ss_dssp H----HHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHH-HHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEEC
T ss_pred H----HHHHh-cCCCEEEEcCcccccCChHHHHHHHHH-HHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEe
Confidence 1 22222 236799999996432 12222211 10 1123556777776432 1223333467899
Q ss_pred CCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhH
Q 041476 307 ECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLA 350 (397)
Q Consensus 307 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 350 (397)
.+ +.++...++.+.+....... ..+..+.|++.+ |.+-.
T Consensus 165 ~~-~~~e~~~il~~~~~~~~~~l---~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 165 EL-DNKTRFKIIKEKLKEFNLEL---RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CC-CHHHHHHHHHHHHHHTTCCC---CHHHHHHHHHHC-SSHHH
T ss_pred CC-CHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhC-CCHHH
Confidence 99 99999999998874322112 245678888888 76654
No 42
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=1.3e-06 Score=81.61 Aligned_cols=175 Identities=15% Similarity=0.223 Sum_probs=102.9
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCcCCHHHHHHHHHHhhCc
Q 041476 155 TIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFD-IVIWVVVSKDMQLERIQQKIGERIGW 233 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (397)
.++|.+..++.|...+..++.+.+.++|++|+||||+|+.++.... ...+. ...-++.+.......+
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~i---------- 93 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVV---------- 93 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHH----------
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHH----------
Confidence 4689988899999888877666699999999999999999998862 11111 1222222222122211
Q ss_pred ccCCCHHHHHHHHHHH------hcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCChh-hhh-hhccCce
Q 041476 234 LQNRSFEEKASGIFNL------LSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLVD-VCG-LMEAQKT 303 (397)
Q Consensus 234 ~~~~~~~~~~~~l~~~------L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~~-v~~-~~~~~~~ 303 (397)
.+.+... +.+.+-++|+|++... ...+.+... +......+.+|++|.... +.. ..+....
T Consensus 94 ---------r~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~-le~~~~~~~~il~~n~~~~i~~~i~sR~~~ 163 (340)
T 1sxj_C 94 ---------RNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRV-IERYTKNTRFCVLANYAHKLTPALLSQCTR 163 (340)
T ss_dssp ---------HTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHH-HHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred ---------HHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHH-HhcCCCCeEEEEEecCccccchhHHhhcee
Confidence 1111111 1234679999998642 233333222 111123456666665432 211 1122347
Q ss_pred eecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 304 FKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 304 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
+.+.+++.++..+.+.+.+....... ..+..+.|++.++|.+--+..+
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~i---~~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 164 FRFQPLPQEAIERRIANVLVHEKLKL---SPNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCB---CHHHHHHHHHHHTTCHHHHHHH
T ss_pred EeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 89999999999988887763222111 2345688889999988754433
No 43
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.48 E-value=6.7e-06 Score=78.37 Aligned_cols=179 Identities=12% Similarity=0.108 Sum_probs=99.7
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCLVE------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
..++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. .. ..+.++++.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 4689999999999888731 234689999999999999999998876 22 123333322111
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCch-------------hhhhcCCCC---CCCCCCCcE
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFN-LLSKMKFLLLLDDIWERI-------------DLAKMGVPF---PASSRNASK 284 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~-------------~~~~l~~~l---~~~~~~gs~ 284 (397)
.. .... ......+.. .-...+.+|+||+++... ....+...+ .........
T Consensus 187 ~~-----------~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 187 KY-----------VGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp ----------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred cc-----------cchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 00 0001 111222222 223456899999996320 011111100 011123355
Q ss_pred EEEEcCChhhh-h-hh-ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchh-HHHHHH
Q 041476 285 IVFTTRLVDVC-G-LM-EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPL-ALITTG 355 (397)
Q Consensus 285 IlvTtR~~~v~-~-~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~ 355 (397)
||.||...... . .. .....+.+...+.++...++...+..... .-..+....|++.+.|..- +|..+.
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66566543321 1 11 12346788899999999999888754321 1224567889999998654 554443
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.47 E-value=1.7e-05 Score=76.88 Aligned_cols=179 Identities=13% Similarity=0.158 Sum_probs=100.2
Q ss_pred CccccchhhHHHHHHHHh------------cCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCLV------------EGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
.+++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.. . . .-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~-~--~----~~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N--N----STFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC-C--S----SEEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc-C--C----CCEEEEeHHH---
Confidence 468999999988888763 1234689999999999999999999876 1 1 1233333221
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch-------------hhhhcCCCC--CCCCCCCcEEE
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI-------------DLAKMGVPF--PASSRNASKIV 286 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-------------~~~~l~~~l--~~~~~~gs~Il 286 (397)
+.... .+ ........+ +...-..++.+|+||+++... ....+...+ +.....+..||
T Consensus 204 -l~~~~---~g-~~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI 275 (444)
T 2zan_A 204 -LVSKW---LG-ESEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 275 (444)
T ss_dssp -------------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEE
T ss_pred -HHhhh---cc-hHHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEE
Confidence 11110 01 011112211 112223578999999997430 112222220 11123456677
Q ss_pred EEcCChhhh-h-hh-ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCc-hhHHHH
Q 041476 287 FTTRLVDVC-G-LM-EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGL-PLALIT 353 (397)
Q Consensus 287 vTtR~~~v~-~-~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~ 353 (397)
.||...... . .. .....+.+...+.++...+|...+....... .......|++.+.|. +-.|..
T Consensus 276 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~ 343 (444)
T 2zan_A 276 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISI 343 (444)
T ss_dssp EEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHH
T ss_pred ecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHH
Confidence 677654321 1 11 2234677888888999999988775432111 234568899999994 434433
No 45
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.45 E-value=5.3e-06 Score=77.33 Aligned_cols=170 Identities=11% Similarity=0.084 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC-------------------CCCCeEEEEEeC---C
Q 041476 160 ESTFDKVWRCLVEGQF-GIIGLYGMGGVGKTTLLAQINNKFLHTP-------------------NYFDIVIWVVVS---K 216 (397)
Q Consensus 160 ~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~vs---~ 216 (397)
+...+.+...+..++. +.+.++|++|+|||++|+.+.+...... .+++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 4556777777777654 5699999999999999999988762111 0122 1222221 1
Q ss_pred cCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCChh-
Q 041476 217 DMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLVD- 293 (397)
Q Consensus 217 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~~- 293 (397)
...+++ .+++.+.+... -..+++-++|+|+++.. ...+.+... +-....++.+|++|.+..
T Consensus 87 ~~~i~~-ir~l~~~~~~~--------------~~~~~~kvviIdead~l~~~a~naLLk~-lEep~~~~~~Il~t~~~~~ 150 (334)
T 1a5t_A 87 TLGVDA-VREVTEKLNEH--------------ARLGGAKVVWVTDAALLTDAAANALLKT-LEEPPAETWFFLATREPER 150 (334)
T ss_dssp SBCHHH-HHHHHHHTTSC--------------CTTSSCEEEEESCGGGBCHHHHHHHHHH-HTSCCTTEEEEEEESCGGG
T ss_pred CCCHHH-HHHHHHHHhhc--------------cccCCcEEEEECchhhcCHHHHHHHHHH-hcCCCCCeEEEEEeCChHh
Confidence 111111 11222221110 01256789999999753 333444322 222234566666666543
Q ss_pred hhh-hhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 294 VCG-LMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 294 v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
+.. ..+....+++.+++.++..+.+.+... . ..+....+++.++|.|..+..+
T Consensus 151 l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 151 LLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----M---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----C---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred CcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 322 223345889999999999999987751 1 1344678999999999766443
No 46
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.42 E-value=3.6e-07 Score=77.11 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=41.6
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++||+.++..+.+.+.....+.+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987767788999999999999999999886
No 47
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=3.8e-06 Score=79.36 Aligned_cols=197 Identities=17% Similarity=0.164 Sum_probs=110.8
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 155 TIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
++.|.++.+++|.+.+.- ..++-+.++||+|+|||.||+.+++.. ...| +.+..+.-.+
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC--
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc--
Confidence 567888888877765431 245788999999999999999999987 2332 3333332211
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHH-hcCCcEEEEEecCCCch----------h------hhhcCCCC-CCCCCCCc
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNL-LSKMKFLLLLDDIWERI----------D------LAKMGVPF-PASSRNAS 283 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~----------~------~~~l~~~l-~~~~~~gs 283 (397)
......+.....+... -...+++|+||+++... + ...+...+ -.....+.
T Consensus 221 ------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 221 ------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp ------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred ------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe
Confidence 0000112222222222 23578999999997410 0 11111110 00223455
Q ss_pred EEEEEcCChhhh-----hhhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhH-HH---HH
Q 041476 284 KIVFTTRLVDVC-----GLMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLA-LI---TT 354 (397)
Q Consensus 284 ~IlvTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa-i~---~~ 354 (397)
.||.||...... +.-.-+..+.+...+.++-.++|+.+........+.+ .+.|++.|.|+-=| |. .-
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~SGADi~~l~~e 364 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCSGADVKGVCTE 364 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCCHHHHHHHHHH
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCCHHHHHHHHHH
Confidence 666677655442 1113456889999999999999988775433222223 46778888885432 11 11
Q ss_pred HHh--hcCC---CChhHHHHHHHHHh
Q 041476 355 GRA--MSSK---KTPEEWSYAIQMLR 375 (397)
Q Consensus 355 ~~~--L~~~---~~~~~w~~~~~~l~ 375 (397)
|.+ ++.+ -+.+++..+++.+.
T Consensus 365 A~~~Air~~~~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 365 AGMYALRERRIHVTQEDFELAVGKVM 390 (405)
T ss_dssp HHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 222 2332 25677777776543
No 48
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.35 E-value=3.6e-06 Score=82.19 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=83.2
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccC--CCCC-C-eEEEEEeCCcCCHHHHHHHHHHh
Q 041476 155 TIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHT--PNYF-D-IVIWVVVSKDMQLERIQQKIGER 230 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~--~~~f-~-~~~wv~vs~~~~~~~i~~~i~~~ 230 (397)
.++||+.++..++..+.....+-+.|+|++|+|||++|+.+++..... .... + ..+.++++..
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~------------- 247 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTK------------- 247 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------
T ss_pred CccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCcc-------------
Confidence 589999999999999987666677899999999999999999886211 1111 1 1222222200
Q ss_pred hCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhh-------hhhccCce
Q 041476 231 IGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVC-------GLMEAQKT 303 (397)
Q Consensus 231 l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~-------~~~~~~~~ 303 (397)
.......... ..+...-..++.+|++| ......+.+... +. ....++|.+|...... ........
T Consensus 248 ~~g~~e~~~~---~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~-L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~ 319 (468)
T 3pxg_A 248 YRGEFEDRLK---KVMDEIRQAGNIILFID--AAIDASNILKPS-LA--RGELQCIGATTLDEYRKYIEKDAALERRFQP 319 (468)
T ss_dssp -----CTTHH---HHHHHHHTCCCCEEEEC--C--------CCC-TT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEE
T ss_pred ccchHHHHHH---HHHHHHHhcCCeEEEEe--CchhHHHHHHHh-hc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCcc
Confidence 0000011111 12222223567899999 222223334333 32 2235666666554411 11112246
Q ss_pred eecCCCChHhHHHHHHHHhCC
Q 041476 304 FKVECLADQDAWELFQKKVGE 324 (397)
Q Consensus 304 ~~l~~L~~~~~~~Lf~~~~~~ 324 (397)
+.+.+++.++...++......
T Consensus 320 i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 320 IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp EECCCCCHHHHHHHHHHTTTT
T ss_pred ceeCCCCHHHHHHHHHHHHHH
Confidence 899999999999999876543
No 49
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=6.2e-06 Score=79.00 Aligned_cols=199 Identities=16% Similarity=0.186 Sum_probs=110.2
Q ss_pred ccccchhhHHHHHHHHh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 155 TIVGLESTFDKVWRCLV----E---------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
++.|.+..+++|.+.+. . ..++-|.++|++|+|||+||+.+++.. ...| +.+..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCe---EEEEhHHhhc--
Confidence 56788888888776542 1 256789999999999999999999987 2222 3333322111
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCch----------------hhhhcCCCC-CCCCCCCc
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFN-LLSKMKFLLLLDDIWERI----------------DLAKMGVPF-PASSRNAS 283 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~----------------~~~~l~~~l-~~~~~~gs 283 (397)
......+.....+.. .-...+++|++|+++... ....+...+ -.....+.
T Consensus 282 ------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 349 (467)
T 4b4t_H 282 ------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 349 (467)
T ss_dssp ------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE
T ss_pred ------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE
Confidence 000011122222222 224578999999997410 011111100 01223345
Q ss_pred EEEEEcCChhhhh--hh---ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhH----HHHH
Q 041476 284 KIVFTTRLVDVCG--LM---EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLA----LITT 354 (397)
Q Consensus 284 ~IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa----i~~~ 354 (397)
.||.||....... .+ .-+..+.+...+.++-.++|+.++.......+.+ .+.|++.|.|+-=| +..-
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfSGADI~~l~~e 425 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNSTGAELRSVCTE 425 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCCHHHHHHHHHH
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCCHHHHHHHHHH
Confidence 5666776544321 11 2456888988899999999988775433222223 46678888886422 2211
Q ss_pred HHhh--cCC---CChhHHHHHHHHHhcc
Q 041476 355 GRAM--SSK---KTPEEWSYAIQMLRRS 377 (397)
Q Consensus 355 ~~~L--~~~---~~~~~w~~~~~~l~~~ 377 (397)
|.+. +.. -+.+++..+++.+...
T Consensus 426 Aa~~Air~~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 426 AGMFAIRARRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp HHHHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCHHHHHHHHHHHhcC
Confidence 2222 222 2566777777665443
No 50
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=4.3e-06 Score=80.11 Aligned_cols=198 Identities=15% Similarity=0.179 Sum_probs=109.4
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 155 TIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
++.|.+..++.|.+.+.- ..++-|.++||+|+|||+||+.+++.. ...| +.++.+.-.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGTCC--
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEehhhhcc--
Confidence 567888888777766531 245789999999999999999999997 2222 3333332211
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHH-hcCCcEEEEEecCCCch----------------hhhhcCCCC-CCCCCCCc
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNL-LSKMKFLLLLDDIWERI----------------DLAKMGVPF-PASSRNAS 283 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~----------------~~~~l~~~l-~~~~~~gs 283 (397)
............+... -...+++|++|+++... .+..+...+ -.....+.
T Consensus 254 ------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~v 321 (437)
T 4b4t_L 254 ------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQT 321 (437)
T ss_dssp ------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSS
T ss_pred ------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCe
Confidence 0001111222222222 23578999999997410 011111110 01223455
Q ss_pred EEEEEcCChhhhh--hhc---cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhH-HHH---H
Q 041476 284 KIVFTTRLVDVCG--LME---AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLA-LIT---T 354 (397)
Q Consensus 284 ~IlvTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa-i~~---~ 354 (397)
.||.||....... .+. -+..+.+...+.++-.++|+.++.......+.+ ...|++.+.|+-=| |.. -
T Consensus 322 ivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~sGADi~~l~~e 397 (437)
T 4b4t_L 322 KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFNGADIRNCATE 397 (437)
T ss_dssp EEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCCHHHHHHHHHH
T ss_pred EEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCCHHHHHHHHHH
Confidence 6777776554421 111 345788888888888899987764332222223 46677888885432 211 1
Q ss_pred HHh--hcCC---CChhHHHHHHHHHhc
Q 041476 355 GRA--MSSK---KTPEEWSYAIQMLRR 376 (397)
Q Consensus 355 ~~~--L~~~---~~~~~w~~~~~~l~~ 376 (397)
|.+ ++.. -+.++...+++.+..
T Consensus 398 A~~~air~~~~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 398 AGFFAIRDDRDHINPDDLMKAVRKVAE 424 (437)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 222 2222 256667776666544
No 51
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=4.2e-06 Score=80.16 Aligned_cols=170 Identities=16% Similarity=0.197 Sum_probs=95.3
Q ss_pred ccccchhhHHHHHHHHh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 155 TIVGLESTFDKVWRCLV----E---------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
++.|.+..+++|.+.+. . ..++-|.++||+|+|||.||+.+++.. ...| +.++.+.-.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~~-- 253 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NATF---LKLAAPQLVQ-- 253 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGGCS--
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCE---EEEehhhhhh--
Confidence 57888888888876642 1 246789999999999999999999987 2222 2333322110
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHH-hcCCcEEEEEecCCCc-------h-----h----hhhcCCCC-CCCCCCCc
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNL-LSKMKFLLLLDDIWER-------I-----D----LAKMGVPF-PASSRNAS 283 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~-------~-----~----~~~l~~~l-~~~~~~gs 283 (397)
............+... -...+++|++|+++.. . . ...+...+ -.....+.
T Consensus 254 ------------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~V 321 (434)
T 4b4t_M 254 ------------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRV 321 (434)
T ss_dssp ------------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSS
T ss_pred ------------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCE
Confidence 0001112222222222 2346899999998621 0 0 11111110 01123345
Q ss_pred EEEEEcCChhhhh--hh---ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch
Q 041476 284 KIVFTTRLVDVCG--LM---EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP 348 (397)
Q Consensus 284 ~IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (397)
.||.||....... .+ .-+..+.+...+.++-.++|+.++.......+-+ .+.|++.|.|+-
T Consensus 322 iVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 322 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp EEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred EEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 6666776655421 11 2345788888888888888887663322122222 466778888754
No 52
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.24 E-value=1.6e-06 Score=70.51 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=36.2
Q ss_pred ccccchhhHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 155 TIVGLESTFDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|+...+.++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999888753 334567899999999999999999875
No 53
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=9.5e-06 Score=76.97 Aligned_cols=199 Identities=18% Similarity=0.204 Sum_probs=108.9
Q ss_pred ccccchhhHHHHHHHHh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 155 TIVGLESTFDKVWRCLV----E---------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
++.|.++.+++|.+.+. . ..++-|.++|++|+|||.||+.+++.. ...| +.++.+.-.+
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGGCC--
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHhhh--
Confidence 46788888877776543 1 245789999999999999999999997 2222 2233221110
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCch----------------hhhhcCCCC-CCCCCCCc
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLL-SKMKFLLLLDDIWERI----------------DLAKMGVPF-PASSRNAS 283 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~----------------~~~~l~~~l-~~~~~~gs 283 (397)
......+.....+.... ...+++|++|+++... ....+...+ -.....+.
T Consensus 255 ------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~V 322 (437)
T 4b4t_I 255 ------------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDV 322 (437)
T ss_dssp ------------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSE
T ss_pred ------------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCE
Confidence 00111122222222222 3578999999987310 011111000 01223445
Q ss_pred EEEEEcCChhhhh--hh---ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhH-HH---HH
Q 041476 284 KIVFTTRLVDVCG--LM---EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLA-LI---TT 354 (397)
Q Consensus 284 ~IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa-i~---~~ 354 (397)
.||.||....... .+ .-+..+.+...+.++-.++|+.++.......+.+ .+.|++.+.|+-=| |. .-
T Consensus 323 iVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfSGADI~~l~~e 398 (437)
T 4b4t_I 323 KVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLSGADIQAMCTE 398 (437)
T ss_dssp EEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCCHHHHHHHHHH
T ss_pred EEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCCHHHHHHHHHH
Confidence 6666776555421 11 2244678888888888999988775433222223 46677788775422 11 11
Q ss_pred HHh--hcCC---CChhHHHHHHHHHhcc
Q 041476 355 GRA--MSSK---KTPEEWSYAIQMLRRS 377 (397)
Q Consensus 355 ~~~--L~~~---~~~~~w~~~~~~l~~~ 377 (397)
|.+ ++.+ -+.++...+++.+..+
T Consensus 399 A~~~Air~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 399 AGLLALRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCHHHHHHHHHHHhCC
Confidence 222 2222 2567777777665443
No 54
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.21 E-value=1.9e-06 Score=77.62 Aligned_cols=173 Identities=16% Similarity=0.085 Sum_probs=91.5
Q ss_pred CccccchhhHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCLVE------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
..++|.+..++.+.+.+.. ...+.+.|+|++|+|||+||+.+++.. ...|- .+..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~---~v~~~~~~~-- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFF---SMGGSSFIE-- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCC---CCCSCTTTT--
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EechHHHHH--
Confidence 4689999888877776541 123457899999999999999999986 22221 111111000
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch-----------------hhhhcCCCCC--CCCCCC
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI-----------------DLAKMGVPFP--ASSRNA 282 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----------------~~~~l~~~l~--~~~~~g 282 (397)
............ .+......++.+|+|||++... ....+...+- ......
T Consensus 83 --------~~~~~~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (268)
T 2r62_A 83 --------MFVGLGASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAP 151 (268)
T ss_dssp --------SCSSSCSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSC
T ss_pred --------hhcchHHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCC
Confidence 000001111111 1222223467899999995321 1222222211 111122
Q ss_pred cEEEEEcCChhhh--hhh---ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchh
Q 041476 283 SKIVFTTRLVDVC--GLM---EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPL 349 (397)
Q Consensus 283 s~IlvTtR~~~v~--~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 349 (397)
..||.||...... ... .....+.+.+.+.++..+++...+.......+.. ...|++.+.|.|-
T Consensus 152 v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~g~~g 219 (268)
T 2r62_A 152 VIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN----LQEVAKLTAGLAG 219 (268)
T ss_dssp CEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC----TTTTTSSSCSSCH
T ss_pred EEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC----HHHHHHHcCCCCH
Confidence 4566666655421 111 1235688899999999999988764322111112 2345666777654
No 55
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.19 E-value=4.3e-06 Score=87.85 Aligned_cols=154 Identities=15% Similarity=0.249 Sum_probs=83.9
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcc--CCCCC-C-eEEEEEeCCcCCHHHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLH--TPNYF-D-IVIWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~--~~~~f-~-~~~wv~vs~~~~~~~i~~~i~~ 229 (397)
+.++||+.++..+++.|.....+.+.|+|++|+|||++|+.+++.... +.... + .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 357999999999999998766667889999999999999999987621 11111 1 233333321100
Q ss_pred hhCcccCCCHHHHHHHHHHHhc--CCcEEEEEecCCCch---h----hh---hcCCCCCCCCCCCcEEEEEcCChhhh--
Q 041476 230 RIGWLQNRSFEEKASGIFNLLS--KMKFLLLLDDIWERI---D----LA---KMGVPFPASSRNASKIVFTTRLVDVC-- 295 (397)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~---~----~~---~l~~~l~~~~~~gs~IlvTtR~~~v~-- 295 (397)
+.............+...+. +++.+|+||++.... . ++ .+... +. ..+..+|.+|......
T Consensus 240 --g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~-l~--~~~i~~I~at~~~~~~~~ 314 (854)
T 1qvr_A 240 --GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPA-LA--RGELRLIGATTLDEYREI 314 (854)
T ss_dssp --------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHH-HH--TTCCCEEEEECHHHHHHH
T ss_pred --cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHH-Hh--CCCeEEEEecCchHHhhh
Confidence 00001122222222323232 368999999997531 0 11 11111 11 1234466555544321
Q ss_pred ----hhhccCceeecCCCChHhHHHHHHHHh
Q 041476 296 ----GLMEAQKTFKVECLADQDAWELFQKKV 322 (397)
Q Consensus 296 ----~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 322 (397)
........+.+.+++.++..+++....
T Consensus 315 ~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 315 EKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp TTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred ccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 111122358999999999999987543
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.18 E-value=1.9e-05 Score=81.99 Aligned_cols=154 Identities=14% Similarity=0.219 Sum_probs=89.8
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCC---CCCCeEEEE-EeCCcCCHHHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTP---NYFDIVIWV-VVSKDMQLERIQQKIGE 229 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv-~vs~~~~~~~i~~~i~~ 229 (397)
+.++||+.++..+++.|.......+.|+|++|+|||++|+.+++...... ...+..+|. ..+.-.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~----------- 254 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL----------- 254 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-----------
Confidence 35799999999999999877667788999999999999999988762110 012333321 111100
Q ss_pred hhCcccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCc----------hh-hhhcCCCCCCCCCCCcEEEEEcCChhhhh-
Q 041476 230 RIGWLQNRSFEEKASGIFNLL-SKMKFLLLLDDIWER----------ID-LAKMGVPFPASSRNASKIVFTTRLVDVCG- 296 (397)
Q Consensus 230 ~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~----------~~-~~~l~~~l~~~~~~gs~IlvTtR~~~v~~- 296 (397)
.+.............+.+.+ ..++.+|+|||+... .+ .+.+... +. .....+|.+|.......
T Consensus 255 -~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~-l~--~~~~~~I~at~~~~~~~~ 330 (758)
T 1r6b_X 255 -AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL-LS--SGKIRVIGSTTYQEFSNI 330 (758)
T ss_dssp -CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC-SS--SCCCEEEEEECHHHHHCC
T ss_pred -ccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHH-Hh--CCCeEEEEEeCchHHhhh
Confidence 00001112233333333333 346799999999743 11 1223333 32 23456666665544211
Q ss_pred ------hhccCceeecCCCChHhHHHHHHHHh
Q 041476 297 ------LMEAQKTFKVECLADQDAWELFQKKV 322 (397)
Q Consensus 297 ------~~~~~~~~~l~~L~~~~~~~Lf~~~~ 322 (397)
.......+.+.+.+.++..+++....
T Consensus 331 ~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 11112368899999999998887654
No 57
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.17 E-value=1.1e-05 Score=73.93 Aligned_cols=147 Identities=12% Similarity=0.112 Sum_probs=89.3
Q ss_pred cchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCC-CCCCeEEEEEeCC-cCCHHHHHHHHHHhhCccc
Q 041476 158 GLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTP-NYFDIVIWVVVSK-DMQLERIQQKIGERIGWLQ 235 (397)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~ 235 (397)
|-++.++.|...+.+++.+.+.++|++|+||||+|+.+.+...... .+.+. .++..+. ...++++ +++.+.+...+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 4456677888888877778999999999999999999987531111 23333 4454432 2333222 22333332110
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCCCCCCCCCcEEEEEcCCh-hhhhhhccCceeecCCCChH
Q 041476 236 NRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPFPASSRNASKIVFTTRLV-DVCGLMEAQKTFKVECLADQ 312 (397)
Q Consensus 236 ~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~~gs~IlvTtR~~-~v~~~~~~~~~~~l~~L~~~ 312 (397)
..+++-++|+|+++.. ...+.+... +-...+.+.+|++|.+. .+...+... .+++.+++++
T Consensus 79 --------------~~~~~kvviIdead~lt~~a~naLLk~-LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 79 --------------ELYTRKYVIVHDCERMTQQAANAFLKA-LEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp --------------SSSSSEEEEETTGGGBCHHHHHHTHHH-HHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred --------------ccCCceEEEeccHHHhCHHHHHHHHHH-HhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 1245679999999743 344444333 22223456666665443 444444455 9999999999
Q ss_pred hHHHHHHHHh
Q 041476 313 DAWELFQKKV 322 (397)
Q Consensus 313 ~~~~Lf~~~~ 322 (397)
+..+.+.+.+
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.13 E-value=1.4e-05 Score=78.12 Aligned_cols=177 Identities=15% Similarity=0.135 Sum_probs=100.3
Q ss_pred ccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 155 TIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
.++|.+..+.+|.+++.. ...+.+.|+|++|+|||++|+.+++.. ... .+.++++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~---fv~vn~~------ 272 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP------ 272 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSE---EEEEEHH------
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCC---EEEEEch------
Confidence 579999999988887642 345678999999999999999998875 222 2333321
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc-------------hhhhhcCCCCC-CCCCCCcEEEE
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER-------------IDLAKMGVPFP-ASSRNASKIVF 287 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-------------~~~~~l~~~l~-~~~~~gs~Ilv 287 (397)
+ +...+. ..........+.....+++.+|+||+++.. .....+...+- .....+..||.
T Consensus 273 ~----l~~~~~---g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIa 345 (489)
T 3hu3_A 273 E----IMSKLA---GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (489)
T ss_dssp H----HHTSCT---THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEE
T ss_pred H----hhhhhc---chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEE
Confidence 1 111111 001112222333344567899999999421 01111211100 01223456666
Q ss_pred EcCChhh-hhhh----ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCc-hhHHHHH
Q 041476 288 TTRLVDV-CGLM----EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGL-PLALITT 354 (397)
Q Consensus 288 TtR~~~v-~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~ 354 (397)
||..... ...+ .....+.+...+.++-.++|...+.......+.. ...+++.+.|+ +-.+..+
T Consensus 346 aTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred ecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 6665532 1111 2234688999999999999998875433222222 35677778775 4444433
No 59
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.12 E-value=9.5e-05 Score=68.77 Aligned_cols=192 Identities=16% Similarity=0.130 Sum_probs=103.5
Q ss_pred CccccchhhHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVE-----GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
+.++|.+..++.+...+.. .....+.|+|++|+||||||+.+++.. ...|. ..+.+-.....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~sg~~~~~~~------- 91 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTSGPVLVKQG------- 91 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEETTTCCSHH-------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEechHhcCHH-------
Confidence 3568888777777666543 244679999999999999999999987 22221 11111011111
Q ss_pred HhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--hhhhhcCCCC--CC------CCC---------CCcEEE-EE
Q 041476 229 ERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER--IDLAKMGVPF--PA------SSR---------NASKIV-FT 288 (397)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l--~~------~~~---------~gs~Il-vT 288 (397)
+... +...+ .++.++++|++... ...+.+...+ .. ... +...++ .|
T Consensus 92 ------------~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at 157 (334)
T 1in4_A 92 ------------DMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT 157 (334)
T ss_dssp ------------HHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEE
T ss_pred ------------HHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEec
Confidence 1111 11112 23457788887532 1112111000 00 000 112222 34
Q ss_pred cCChhhhhhhc--cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHHHHh------hcC
Q 041476 289 TRLVDVCGLME--AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITTGRA------MSS 360 (397)
Q Consensus 289 tR~~~v~~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~------L~~ 360 (397)
++...+...+. ....+.+++.+.++-.+++.+.+..... .-..+.+..|++.+.|.|-.+.-+... +.+
T Consensus 158 ~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~ 234 (334)
T 1in4_A 158 TRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVK 234 (334)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 44433322111 1235789999999999999887632221 122466899999999999765443322 222
Q ss_pred C--CChhHHHHHHHHHh
Q 041476 361 K--KTPEEWSYAIQMLR 375 (397)
Q Consensus 361 ~--~~~~~w~~~~~~l~ 375 (397)
. -+.+.-+.+++.+.
T Consensus 235 ~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 235 ADRINTDIVLKTMEVLN 251 (334)
T ss_dssp CSSBCHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHhC
Confidence 2 36666677666654
No 60
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.11 E-value=7.1e-05 Score=66.76 Aligned_cols=176 Identities=15% Similarity=0.097 Sum_probs=94.2
Q ss_pred CccccchhhHHHHHHHH---hc---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCL---VE---------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
.+++|.+..++.+.+.+ .. ...+-+.|+|++|+||||||+.+++.. ...| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 46799888777665543 22 123468899999999999999999886 2222 3333221110
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch----------------hhhhcCCCCC-CCCCCCcE
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI----------------DLAKMGVPFP-ASSRNASK 284 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------------~~~~l~~~l~-~~~~~gs~ 284 (397)
.. ...........+.......+.++++|+++... ....+...+- .....+..
T Consensus 84 --------~~---~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 152 (257)
T 1lv7_A 84 --------MF---VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 152 (257)
T ss_dssp --------SC---CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEE
T ss_pred --------Hh---hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEE
Confidence 00 11122222233333334567899999984210 0111110000 01233456
Q ss_pred EEEEcCChhhh-hhh-c---cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCC-chhHHH
Q 041476 285 IVFTTRLVDVC-GLM-E---AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSG-LPLALI 352 (397)
Q Consensus 285 IlvTtR~~~v~-~~~-~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~ 352 (397)
||.||...... ... . ....+.+...+.++-.+++...+.......+.. ...++..+.| .+--|.
T Consensus 153 vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 153 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHH
Confidence 77777655421 111 1 234677888888888888877764322111111 3557778888 564444
No 61
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.10 E-value=1.9e-06 Score=72.67 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=61.7
Q ss_pred hhhHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccC
Q 041476 160 ESTFDKVWRCLVE---GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQN 236 (397)
Q Consensus 160 ~~~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 236 (397)
...++.+.+++.+ .....+.|+|++|+|||||++.+++......+ + .++++ +..++...+.........
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g-~-~~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG-I-RGYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC-C-CCCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC-C-eEEEE------EHHHHHHHHHHHhcCchH
Confidence 3444555555443 23478999999999999999999988621111 1 12233 344555555444332111
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEEecCCC--chhhh--hcCCCCCC-CCCCCcEEEEEcCCh
Q 041476 237 RSFEEKASGIFNLLSKMKFLLLLDDIWE--RIDLA--KMGVPFPA-SSRNASKIVFTTRLV 292 (397)
Q Consensus 237 ~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~--~l~~~l~~-~~~~gs~IlvTtR~~ 292 (397)
. ..... +. +.-+|||||++. ...|. .+... +. ....|..+|+||...
T Consensus 92 ~---~~~~~----~~-~~~llilDE~~~~~~~~~~~~~l~~l-l~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 T---KFLKT----VL-NSPVLVLDDLGSERLSDWQRELISYI-ITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp S---HHHHH----HH-TCSEEEEETCSSSCCCHHHHHHHHHH-HHHHHHTTCEEEEECCCC
T ss_pred H---HHHHH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHH-HHHHHHcCCCEEEEcCCC
Confidence 1 12222 22 456999999973 23332 11111 11 112456788888743
No 62
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.10 E-value=2.3e-05 Score=76.19 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=96.4
Q ss_pred CccccchhhHHHHHHHH---hcC---------CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCL---VEG---------QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
.+++|.+..++++.+.+ ... ..+-+.|+|++|+|||+||+.+++.. ...| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 45789888776666553 221 23458899999999999999999986 2222 23343322110
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc----------------hhhhhcCCCCC-CCCCCCcE
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWER----------------IDLAKMGVPFP-ASSRNASK 284 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~----------------~~~~~l~~~l~-~~~~~gs~ 284 (397)
+. ..........+.......+++|+||+++.. .....+...+- .....+..
T Consensus 89 ---------~~---g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~vi 156 (476)
T 2ce7_A 89 ---------FV---GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156 (476)
T ss_dssp ---------CT---THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEE
T ss_pred ---------Hh---cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEE
Confidence 00 001112222333444567899999999531 01122211100 01123566
Q ss_pred EEEEcCChhhhh--hhc---cCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch
Q 041476 285 IVFTTRLVDVCG--LME---AQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP 348 (397)
Q Consensus 285 IlvTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (397)
||.||....... ... ....+.+.+.+.++-.++++.++.......+.. ...|++.+.|..
T Consensus 157 VIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 777777665422 111 234778888888888888887764432121112 355788888877
No 63
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=1.6e-05 Score=76.01 Aligned_cols=171 Identities=16% Similarity=0.190 Sum_probs=91.7
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCH
Q 041476 154 PTIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQL 220 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 220 (397)
.++.|.+..+++|.+.+.- ..++-+.++||+|+|||+||+.+++.. ...| +.++.+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAAF---IRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEE---EEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCe---EEEecchhhc-
Confidence 3568888888888776531 245679999999999999999999987 2222 3333332111
Q ss_pred HHHHHHHHHhhCcccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCc------------h----hhhhcCCCCC-CCCCCC
Q 041476 221 ERIQQKIGERIGWLQNRSFEEKASGIFN-LLSKMKFLLLLDDIWER------------I----DLAKMGVPFP-ASSRNA 282 (397)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~------------~----~~~~l~~~l~-~~~~~g 282 (397)
............+.. .-...+++|++|+++.. . ....+...+- .....+
T Consensus 245 -------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 245 -------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp -------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred -------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 000011112222222 22457899999998521 0 0111111100 012345
Q ss_pred cEEEEEcCChhhh--hhhc---cCceeecCCCC-hHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch
Q 041476 283 SKIVFTTRLVDVC--GLME---AQKTFKVECLA-DQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP 348 (397)
Q Consensus 283 s~IlvTtR~~~v~--~~~~---~~~~~~l~~L~-~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (397)
..||.||...... .... -+..+++..++ .++-..+|+.++.......+.+ .+.|++.|.|+-
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 5677777655431 1112 23467776564 5555667766654322122223 466777888754
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.08 E-value=2.9e-05 Score=80.48 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=84.2
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCC--CCCCeEEEEEeCCcCCHHHHHHHHHHhh
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTP--NYFDIVIWVVVSKDMQLERIQQKIGERI 231 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~--~~f~~~~wv~vs~~~~~~~i~~~i~~~l 231 (397)
+.++||+.++..+...|......-+.++|++|+|||++|+.+++...... ......-++.++-. ...
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g-----------~~~ 248 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----------TKY 248 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc-----------ccc
Confidence 35899999999999999876666788999999999999999998862111 11111111111110 000
Q ss_pred CcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhh-------hhhccCcee
Q 041476 232 GWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVC-------GLMEAQKTF 304 (397)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~-------~~~~~~~~~ 304 (397)
....... +...+......++.+|++| ......+.+... +. ....++|.||...... ........+
T Consensus 249 ~G~~e~~---l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~-l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i 320 (758)
T 3pxi_A 249 RGEFEDR---LKKVMDEIRQAGNIILFID--AAIDASNILKPS-LA--RGELQCIGATTLDEYRKYIEKDAALERRFQPI 320 (758)
T ss_dssp ----CTT---HHHHHHHHHTCCCCEEEEC--C--------CCC-TT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEE
T ss_pred cchHHHH---HHHHHHHHHhcCCEEEEEc--CchhHHHHHHHH-Hh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEE
Confidence 0001111 1222233334678899999 222222333333 22 2345666666554421 111122468
Q ss_pred ecCCCChHhHHHHHHHHhC
Q 041476 305 KVECLADQDAWELFQKKVG 323 (397)
Q Consensus 305 ~l~~L~~~~~~~Lf~~~~~ 323 (397)
.+.+++.++..+++.....
T Consensus 321 ~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 321 QVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp ECCCCCHHHHHHHHHHTTT
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 9999999999999987654
No 65
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.03 E-value=5e-05 Score=69.56 Aligned_cols=46 Identities=24% Similarity=0.197 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHHhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVE--------------GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.+..++.+...+.. .....+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999988887754 235678899999999999999999887
No 66
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.00 E-value=1.4e-05 Score=73.50 Aligned_cols=60 Identities=20% Similarity=0.341 Sum_probs=43.7
Q ss_pred CccccchhhHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 041476 154 PTIVGLESTFDKVWRCLVEG---------QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK 216 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 216 (397)
..++|.+..++.+...+... ....+.|+|++|+|||++|+.+++... ..-...+.+.++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeeccc
Confidence 35789999988888877642 135899999999999999999999862 2222345555544
No 67
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.95 E-value=2.5e-05 Score=67.01 Aligned_cols=114 Identities=24% Similarity=0.197 Sum_probs=60.4
Q ss_pred hHHHHHHHHhcC----CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCC
Q 041476 162 TFDKVWRCLVEG----QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNR 237 (397)
Q Consensus 162 ~~~~l~~~L~~~----~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 237 (397)
.++.+..++... ....+.|+|++|+|||+||+.+++... .....++|+++ ..+...+...... .
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~---~ 104 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYV------PELFRELKHSLQD---Q 104 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEH------HHHHHHHHHC------C
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEh------HHHHHHHHHHhcc---c
Confidence 444555555543 127889999999999999999999872 22334566654 3444444433321 1
Q ss_pred CHHHHHHHHHHHhcCCcEEEEEecCCC--chhhhh--cCCCCCCCC-CCCcEEEEEcCCh
Q 041476 238 SFEEKASGIFNLLSKMKFLLLLDDIWE--RIDLAK--MGVPFPASS-RNASKIVFTTRLV 292 (397)
Q Consensus 238 ~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~--l~~~l~~~~-~~gs~IlvTtR~~ 292 (397)
........+ .. .-+|||||++. ...|.. +...++... ..+.++|+||...
T Consensus 105 ~~~~~~~~~----~~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 105 TMNEKLDYI----KK-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp CCHHHHHHH----HH-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred hHHHHHHHh----cC-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 122222222 22 23999999964 233322 211101111 2345688877743
No 68
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.94 E-value=2e-05 Score=70.78 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=34.8
Q ss_pred CccccchhhHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.+..+..+.+.+.. .....+.|+|++|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3478999988888776643 334577899999999999999999876
No 69
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.94 E-value=4.6e-06 Score=67.59 Aligned_cols=46 Identities=13% Similarity=0.040 Sum_probs=34.5
Q ss_pred CccccchhhHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|++..+.++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3578999988888887653 334557899999999999999998765
No 70
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.93 E-value=8.8e-05 Score=72.11 Aligned_cols=46 Identities=24% Similarity=0.235 Sum_probs=35.9
Q ss_pred CccccchhhHHHHHHH---HhcC--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRC---LVEG--QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~---L~~~--~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.+..++.+..+ +..+ ..+-+.++|++|+|||+||+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 5689999887765444 3333 33578899999999999999999876
No 71
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.89 E-value=2.4e-05 Score=71.81 Aligned_cols=46 Identities=11% Similarity=0.176 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.++|+...+.++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3579999999988887754 344567899999999999999999875
No 72
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.79 E-value=1.6e-05 Score=64.76 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVS 215 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 215 (397)
....+.|+|+.|+|||||++.++.... .. .+ ..+++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~-g~-~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-EA-GK-NAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-TT-TC-CEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-hc-CC-cEEEEcHH
Confidence 456899999999999999999999872 21 11 25566544
No 73
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.73 E-value=0.00031 Score=72.26 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=97.2
Q ss_pred ccccchhhHHHHHHHHh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 155 TIVGLESTFDKVWRCLV----E---------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
++.|.+..+++|.+.+. . ..++-|.++|++|+|||+||+.+++.. ..+| +.|+.+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~---~~v~~~~----- 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPE----- 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEE---EEEEHHH-----
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeE---EEEEhHH-----
Confidence 46788888877777642 1 245689999999999999999999987 2322 3343221
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch--------h-----hhhcCCCCC-CCCCCCcEEEE
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI--------D-----LAKMGVPFP-ASSRNASKIVF 287 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--------~-----~~~l~~~l~-~~~~~gs~Ilv 287 (397)
+.... .......+...+.......+++|+||+++... . ...+...+- .....+..||.
T Consensus 274 -----l~sk~---~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIa 345 (806)
T 3cf2_A 274 -----IMSKL---AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp -----HHSSC---TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEE
T ss_pred -----hhccc---chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEE
Confidence 11100 01111222222333345679999999996310 0 111111100 01123345555
Q ss_pred EcCChhhh-hhh----ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhH
Q 041476 288 TTRLVDVC-GLM----EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLPLA 350 (397)
Q Consensus 288 TtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 350 (397)
||...... ..+ .-...+++...+.++-.++|+.+........+.+ ...|++++.|+--|
T Consensus 346 aTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsga 409 (806)
T 3cf2_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGA 409 (806)
T ss_dssp ECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCHH
T ss_pred ecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCHH
Confidence 66554331 111 2345788999999999999987765433222222 46678888887533
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.71 E-value=2.4e-05 Score=81.11 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=82.2
Q ss_pred CccccchhhHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHH
Q 041476 154 PTIVGLESTFDKVWRCLVEG---------QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQ 224 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~ 224 (397)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++... ..-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~~~~~~--- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSEYMEKH--- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGGGCSSC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechhccccc---
Confidence 45799999998888877531 123699999999999999999998862 222234455554322100
Q ss_pred HHHHHhhCcccCCCHHHHHHHHHHHhc-CCcEEEEEecCCCc--hhhhhcCCCC----CCC------CCCCcEEEEEcCC
Q 041476 225 QKIGERIGWLQNRSFEEKASGIFNLLS-KMKFLLLLDDIWER--IDLAKMGVPF----PAS------SRNASKIVFTTRL 291 (397)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~--~~~~~l~~~l----~~~------~~~gs~IlvTtR~ 291 (397)
.... ..+...++ ....+|+||++... ..++.+...+ +.. .....+||+||..
T Consensus 565 -----------~~~~----~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 -----------STSG----GQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -----------CCC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -----------cccc----chhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0000 11112222 23459999999642 2222221110 111 1234678888873
Q ss_pred hh-----h----hh-----hhc-cCceeecCCCChHhHHHHHHHHh
Q 041476 292 VD-----V----CG-----LME-AQKTFKVECLADQDAWELFQKKV 322 (397)
Q Consensus 292 ~~-----v----~~-----~~~-~~~~~~l~~L~~~~~~~Lf~~~~ 322 (397)
.. + .. ... -...+.+.+|+.++...++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 11 1 01 111 23478999999999888887654
No 75
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.70 E-value=0.00028 Score=70.03 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=77.5
Q ss_pred ccccchhhHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 155 TIVGLESTFDKVWRCLVE------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
+++|.+.....+.+.+.- ....++.|+|++|+||||||+.++... ...| .-+.++...+...+.....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l---~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL---GRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH---TCEE---EEECCCC------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc---CCCe---EEEEecccchhhhhhhHHH
Confidence 468887777766554321 245689999999999999999999887 2222 2223332222111111111
Q ss_pred HhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch------hhhhcCCCC-------CCCC-------CCCcEEEEE
Q 041476 229 ERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI------DLAKMGVPF-------PASS-------RNASKIVFT 288 (397)
Q Consensus 229 ~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------~~~~l~~~l-------~~~~-------~~gs~IlvT 288 (397)
..++. ........+. ......-+++||++.... ....+...+ +... .....+|.|
T Consensus 156 ~~ig~----~~~~~~~~~~-~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~t 230 (543)
T 3m6a_A 156 TYVGA----MPGRIIQGMK-KAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIAT 230 (543)
T ss_dssp ------------CHHHHHH-TTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEE
T ss_pred HHhcc----CchHHHHHHH-HhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEec
Confidence 11110 0011111111 222234488999997421 112222110 0000 033566767
Q ss_pred cCChhhh--hhhccCceeecCCCChHhHHHHHHHHh
Q 041476 289 TRLVDVC--GLMEAQKTFKVECLADQDAWELFQKKV 322 (397)
Q Consensus 289 tR~~~v~--~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 322 (397)
|...... ........+.+.+++.++-..++.+++
T Consensus 231 tN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 231 ANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred cCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 6654321 111222478999999999998887765
No 76
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.66 E-value=0.00066 Score=66.33 Aligned_cols=167 Identities=16% Similarity=0.152 Sum_probs=91.6
Q ss_pred CccccchhhHHHHHHHH---hcC---------CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCL---VEG---------QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
.+++|.+..+.++.+.. ... -.+-+.|+|++|+||||||+.++... .. ..+.++.+.-.+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---CEEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEehhHHHH--
Confidence 46899887766665543 221 12358999999999999999999886 21 233444332111
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHhcC----CcEEEEEecCCCc------------hh----hhhcCCCCCC--CC
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLLSK----MKFLLLLDDIWER------------ID----LAKMGVPFPA--SS 279 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~----kr~LlVlDdv~~~------------~~----~~~l~~~l~~--~~ 279 (397)
.........++..++. .++++++|++... .. ...+... +. ..
T Consensus 103 ---------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~-Ldg~~~ 166 (499)
T 2dhr_A 103 ---------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDGFEK 166 (499)
T ss_dssp ---------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHH-GGGCCS
T ss_pred ---------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHH-hccccc
Confidence 0001112233344432 3589999999531 00 1122111 11 11
Q ss_pred CCCcEEEEEcCChhhhh--hh---ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch
Q 041476 280 RNASKIVFTTRLVDVCG--LM---EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP 348 (397)
Q Consensus 280 ~~gs~IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (397)
..+..++.||....... .. .....+.+...+.++-.+++..++.......+.. ...|+..+.|+.
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 23345566666655421 11 2345788888899888898887653322111111 455777788866
No 77
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.64 E-value=0.0027 Score=57.06 Aligned_cols=147 Identities=16% Similarity=0.137 Sum_probs=80.7
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCC-
Q 041476 154 PTIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQ- 219 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~- 219 (397)
.++.|.+..++.|.+.+.. .-.+-+.|+|++|+|||||++.++... . . ..+.+..+.-.+
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~--~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-G--L---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-T--C---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-C--C---CEEEEEcHHHHhh
Confidence 3567877777777665421 112349999999999999999999876 1 1 234444322111
Q ss_pred -HHHHHHHHHHhhCcccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCchh-------------hhhcCCCCCC--CCCCC
Q 041476 220 -LERIQQKIGERIGWLQNRSFEEKASGIFNLL-SKMKFLLLLDDIWERID-------------LAKMGVPFPA--SSRNA 282 (397)
Q Consensus 220 -~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~-------------~~~l~~~l~~--~~~~g 282 (397)
..+. ......+.+.. ...++++++|++..... ...+... +. .....
T Consensus 84 ~~~~~----------------~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~-Lsgg~~~~~ 146 (274)
T 2x8a_A 84 YVGES----------------ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTE-MDGLEARQQ 146 (274)
T ss_dssp TTHHH----------------HHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHH-HHTCCSTTC
T ss_pred hhhHH----------------HHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHh-hhcccccCC
Confidence 0000 11112222222 34678999999964210 0111001 11 11223
Q ss_pred cEEEEEcCChhhhhh--h---ccCceeecCCCChHhHHHHHHHHhC
Q 041476 283 SKIVFTTRLVDVCGL--M---EAQKTFKVECLADQDAWELFQKKVG 323 (397)
Q Consensus 283 s~IlvTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~~~ 323 (397)
.-++.+|....+... . .-...+.+...+.++-.++|+....
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 445566666655321 1 2355788999999999999988763
No 78
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.52 E-value=0.0014 Score=58.20 Aligned_cols=170 Identities=15% Similarity=0.151 Sum_probs=87.5
Q ss_pred CccccchhhHHHHHHHH---hc---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCL---VE---------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
++++|.+..+.++.+.. .. .-.+-+.|+|++|+|||||++.++... . ...+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~-~-----~~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R-----VPFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT-T-----CCEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-C-----CCEEEeeHH------
Confidence 45788876665554432 21 012348999999999999999999886 2 122333221
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCc------------hh----hhhcCCCCCCC--CCCC
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLL-SKMKFLLLLDDIWER------------ID----LAKMGVPFPAS--SRNA 282 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~------------~~----~~~l~~~l~~~--~~~g 282 (397)
++ ..... .........+.+.. ...+.++++|++... .. ...+... +.. ....
T Consensus 84 ~~----~~~~~----~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~-l~g~~~~~~ 154 (254)
T 1ixz_A 84 DF----VEMFV----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDGFEKDTA 154 (254)
T ss_dssp HH----HHSCT----THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHH-HHTCCTTCC
T ss_pred HH----HHHHh----hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHH-HhCCCCCCC
Confidence 11 11000 00111122222222 245689999998421 00 1122111 111 1122
Q ss_pred cEEEEEcCChhhhh--hh---ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch
Q 041476 283 SKIVFTTRLVDVCG--LM---EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP 348 (397)
Q Consensus 283 s~IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (397)
..++.||....... .. .....+.+...+.++-.++++..+.......+.. ...|++.+.|.-
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 34455666555421 11 2345788888899888888887663322111112 345777787754
No 79
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.50 E-value=0.00079 Score=70.01 Aligned_cols=170 Identities=15% Similarity=0.148 Sum_probs=91.6
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCH
Q 041476 154 PTIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQL 220 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 220 (397)
.+++|.+..+++|.+++.. .....+.|+|++|+||||||+.++... ...| +.++.+.-
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~l--- 274 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPEI--- 274 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHHH---
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchHh---
Confidence 3578999988888887642 234579999999999999999998876 2222 33332110
Q ss_pred HHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcEEEEEecCCCch----------------hhhhcCCCCCCCCCCCcE
Q 041476 221 ERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKFLLLLDDIWERI----------------DLAKMGVPFPASSRNASK 284 (397)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----------------~~~~l~~~l~~~~~~gs~ 284 (397)
.... ...........+.......+.++++|++.... .+..+... + ....+..
T Consensus 275 -------~~~~---~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g-~-~~~~~v~ 342 (806)
T 1ypw_A 275 -------MSKL---AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG-L-KQRAHVI 342 (806)
T ss_dssp -------SSSS---TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHS-S-CTTSCCE
T ss_pred -------hhhh---hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhh-h-cccccEE
Confidence 0000 00011112222333334567999999984210 01111111 1 1123455
Q ss_pred EEEEcCChhhh-hhh----ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch
Q 041476 285 IVFTTRLVDVC-GLM----EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP 348 (397)
Q Consensus 285 IlvTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (397)
+|.||...... ..+ .....+.+...+.++-.+++...+..........+ ..++..+.|..
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l----~~la~~t~g~~ 407 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCT----HHHHHSCSSCC
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchh----HHHHHhhcCcc
Confidence 66666554321 111 12345778888899999999876643322222222 34555565543
No 80
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.49 E-value=0.0017 Score=58.46 Aligned_cols=170 Identities=15% Similarity=0.149 Sum_probs=88.3
Q ss_pred CccccchhhHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 154 PTIVGLESTFDKVWRCLV---E---------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
++++|.+..+.++.+... . .-.+-+.|+|++|+|||||++.++... . ...+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~-~-----~~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R-----VPFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT-T-----CCEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc-C-----CCEEEecHH------
Confidence 467898876666554432 1 012238999999999999999999886 2 122333321
Q ss_pred HHHHHHHHhhCcccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCc------------hh----hhhcCCCCCCCC--CCC
Q 041476 222 RIQQKIGERIGWLQNRSFEEKASGIFNLL-SKMKFLLLLDDIWER------------ID----LAKMGVPFPASS--RNA 282 (397)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~------------~~----~~~l~~~l~~~~--~~g 282 (397)
.+. .... .........+.+.. ...+.++++|++... .. ...+... +... ...
T Consensus 108 ~~~----~~~~----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~-lsgg~~~~~ 178 (278)
T 1iy2_A 108 DFV----EMFV----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDGFEKDTA 178 (278)
T ss_dssp HHH----HSTT----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHH-HTTCCTTCC
T ss_pred HHH----HHHh----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHH-HhCCCCCCC
Confidence 111 1000 00111112222222 245789999998421 01 1111111 1111 122
Q ss_pred cEEEEEcCChhhhh--hh---ccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCch
Q 041476 283 SKIVFTTRLVDVCG--LM---EAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGLP 348 (397)
Q Consensus 283 s~IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (397)
..++.||....... .. .....+.+...+.++-.+++...+.......+.. ...++..+.|..
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 34445565554421 11 2345788999999988888887664322111111 345777888765
No 81
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.49 E-value=0.00039 Score=60.07 Aligned_cols=84 Identities=21% Similarity=0.190 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCc-----------ccCCC---H
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGW-----------LQNRS---F 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~-----------~~~~~---~ 239 (397)
.-.++.|+|++|+|||||+..+.. . . -..++|++....++...+.. +.+.++. ....+ .
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 346899999999999999999987 3 1 24678888776555555443 3333221 11112 2
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCCC
Q 041476 240 EEKASGIFNLLSKMKFLLLLDDIWE 264 (397)
Q Consensus 240 ~~~~~~l~~~L~~kr~LlVlDdv~~ 264 (397)
.+....++..+..+.-+||||.+..
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 3344555555544578999999854
No 82
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.43 E-value=0.00044 Score=64.48 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
.-+++.|.|++|+|||||+.++..... ..-..++|++....++.. .++.++.. ...+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 346999999999999999999988762 122357788877666643 34444432 345666666666
Q ss_pred HHHhc-CCcEEEEEecCCC
Q 041476 247 FNLLS-KMKFLLLLDDIWE 264 (397)
Q Consensus 247 ~~~L~-~kr~LlVlDdv~~ 264 (397)
...++ .+.-++|+|.+..
T Consensus 132 ~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHTSCCSEEEEECTTT
T ss_pred HHHhhhcCCCeEEehHhhh
Confidence 66554 4566999999853
No 83
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.41 E-value=0.0001 Score=67.29 Aligned_cols=69 Identities=17% Similarity=0.305 Sum_probs=45.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe--CCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcC
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVV--SKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSK 252 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~v--s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~ 252 (397)
.+++.|+|++|+|||+||.++.... . ..++|++. ....+ . ...+.+.....+.+.+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G-----~~VlyIs~~~eE~v~-------------~-~~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-G-----GKDKYATVRFGEPLS-------------G-YNTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-H-----TTSCCEEEEBSCSST-------------T-CBCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-C-----CCEEEEEecchhhhh-------------h-hhcCHHHHHHHHHHHHhh
Confidence 3577899999999999999998752 1 12345665 22211 0 013455566666666766
Q ss_pred CcEEEEEecCCC
Q 041476 253 MKFLLLLDDIWE 264 (397)
Q Consensus 253 kr~LlVlDdv~~ 264 (397)
.+ +||||++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 66 999999964
No 84
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.31 E-value=0.00039 Score=72.07 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhc---------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVE---------GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999888888777642 123478999999999999999999886
No 85
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.28 E-value=0.00046 Score=62.81 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+..+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999987
No 86
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.27 E-value=0.00087 Score=62.53 Aligned_cols=83 Identities=17% Similarity=0.150 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
.-+++.|.|++|+||||||.++...... .-..++|++....++.. .++.++.. ...+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4468999999999999999999876621 22468899887766543 23444432 234556666655
Q ss_pred HHHhc-CCcEEEEEecCCC
Q 041476 247 FNLLS-KMKFLLLLDDIWE 264 (397)
Q Consensus 247 ~~~L~-~kr~LlVlDdv~~ 264 (397)
....+ .+.-+||+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 55554 3567999999853
No 87
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.26 E-value=0.00042 Score=72.75 Aligned_cols=45 Identities=24% Similarity=0.394 Sum_probs=36.9
Q ss_pred ccccchhhHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 155 TIVGLESTFDKVWRCLVEG---------QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|.+..+..+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999888887776531 22588999999999999999999886
No 88
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.23 E-value=0.0011 Score=62.21 Aligned_cols=82 Identities=17% Similarity=0.108 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
.-.++.|.|++|+||||||.++...... .-..++|++....++.. .++.++.. ...+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 3468999999999999999998877621 22468899988766543 23344432 234566666667
Q ss_pred HHHhcC-CcEEEEEecCC
Q 041476 247 FNLLSK-MKFLLLLDDIW 263 (397)
Q Consensus 247 ~~~L~~-kr~LlVlDdv~ 263 (397)
....+. +.-+||+|.+.
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 666654 45699999984
No 89
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.21 E-value=0.0023 Score=59.07 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCC---CCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----------cCCCH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTP---NYFDIVIWVVVSKDMQLERIQQKIGERIGWL-----------QNRSF 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~~~~~ 239 (397)
.-.++.|+|++|+||||||.+++....... ..-..++|++....++...+.+ +++.++.. ...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 346999999999999999999987651110 0134789999888777666553 34444332 12233
Q ss_pred H---HHHHHHHHHhc--CCcEEEEEecCCC
Q 041476 240 E---EKASGIFNLLS--KMKFLLLLDDIWE 264 (397)
Q Consensus 240 ~---~~~~~l~~~L~--~kr~LlVlDdv~~ 264 (397)
+ +....+...++ .+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 3 24445555554 4567999999853
No 90
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.19 E-value=0.0028 Score=55.42 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCC----CCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----------cCCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPN----YFDIVIWVVVSKDMQLERIQQKIGERIGWL-----------QNRS 238 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~~~~ 238 (397)
.-.++.|+|++|+|||||+..+..... ... .-..++|+.....++...+. .+++.++.. ...+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQ-LPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTT-SCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHh-CchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 346999999999999999999988631 111 23578888877755544433 233333321 1223
Q ss_pred HHH---HHHHHHHHhc-CCcEEEEEecCCC
Q 041476 239 FEE---KASGIFNLLS-KMKFLLLLDDIWE 264 (397)
Q Consensus 239 ~~~---~~~~l~~~L~-~kr~LlVlDdv~~ 264 (397)
..+ ....+.+.+. .+.-+||||++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 333 2333555554 4678999999853
No 91
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.17 E-value=0.0016 Score=59.32 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHH-HHHHH
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEK-ASGIF 247 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~-~~~l~ 247 (397)
+++.|.|++|+|||||+.++.....+ ...-..++|++....++.. .+++++.. ...+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 47899999999999999998877621 1113468899988777653 25666543 34455555 33333
Q ss_pred HH--h-cCCcEEEEEecCCC
Q 041476 248 NL--L-SKMKFLLLLDDIWE 264 (397)
Q Consensus 248 ~~--L-~~kr~LlVlDdv~~ 264 (397)
.. + .++.-|||+|-+..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 32 3 35678999999864
No 92
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.16 E-value=0.001 Score=62.10 Aligned_cols=82 Identities=17% Similarity=0.106 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
.-+++.|.|++|+||||||.++...... .-..++|++....++... ++.++.. ...+.++..+.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHH
Confidence 4468999999999999999998877621 223688999877766431 3444432 223455555555
Q ss_pred HHHhc-CCcEEEEEecCC
Q 041476 247 FNLLS-KMKFLLLLDDIW 263 (397)
Q Consensus 247 ~~~L~-~kr~LlVlDdv~ 263 (397)
....+ .+.-+||+|.+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 54443 445699999984
No 93
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.11 E-value=0.0042 Score=57.66 Aligned_cols=165 Identities=11% Similarity=-0.049 Sum_probs=97.9
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHH
Q 041476 166 VWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASG 245 (397)
Q Consensus 166 l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~ 245 (397)
+.+.+.+.-.++..++|+.|.||++.+..+..... ...|+....+.+....++.++...+..
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------- 70 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQA---------------- 70 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHHH----------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhcC----------------
Confidence 33444434567999999999999999999888652 122332222233334444444333211
Q ss_pred HHHHhcCCcEEEEEecCCC---chhhhhcCCCCCCCCCCCcEEEEEcCC-------hhhhhhh-ccCceeecCCCChHhH
Q 041476 246 IFNLLSKMKFLLLLDDIWE---RIDLAKMGVPFPASSRNASKIVFTTRL-------VDVCGLM-EAQKTFKVECLADQDA 314 (397)
Q Consensus 246 l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~~gs~IlvTtR~-------~~v~~~~-~~~~~~~l~~L~~~~~ 314 (397)
.-+-+++-++|+|++.. ...++.+... +....+++.+|+++.. ..+...+ .....++..+++.++.
T Consensus 71 --~plf~~~kvvii~~~~~kl~~~~~~aLl~~-le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l 147 (343)
T 1jr3_D 71 --MSLFASRQTLLLLLPENGPNAAINEQLLTL-TGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQL 147 (343)
T ss_dssp --HHHCCSCEEEEEECCSSCCCTTHHHHHHHH-HTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHH
T ss_pred --cCCccCCeEEEEECCCCCCChHHHHHHHHH-HhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHH
Confidence 11345677889999854 3445555433 3222346667665543 1233332 3446889999999999
Q ss_pred HHHHHHHhCCccCCCCCChHHHHHHHHHHcCCchhHHHHH
Q 041476 315 WELFQKKVGEETLESHPDIPELAQTVANECSGLPLALITT 354 (397)
Q Consensus 315 ~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 354 (397)
...+.+.+....... ..+.++.+++.++|.+..+...
T Consensus 148 ~~~l~~~~~~~g~~i---~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 148 PRWVAARAKQLNLEL---DDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHHHHHTTCEE---CHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCC---CHHHHHHHHHHhchHHHHHHHH
Confidence 988887764322111 2355788888999888777653
No 94
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.08 E-value=0.00091 Score=61.31 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhcC---CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 161 STFDKVWRCLVEG---QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 161 ~~~~~l~~~L~~~---~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+..+.+++... ....+.|+|++|+|||+||..+++..
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3444555555542 24688899999999999999999987
No 95
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.08 E-value=0.0027 Score=59.08 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCC---CCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----------cCCCH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTP---NYFDIVIWVVVSKDMQLERIQQKIGERIGWL-----------QNRSF 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~~~~~ 239 (397)
.-.++.|+|++|+||||||.+++....... ..-..++|++....++...+.+ +++.++.. ...+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 446899999999999999999987741100 0235788999888777666544 33443321 11122
Q ss_pred H---HHHHHHHHHhc---CCcEEEEEecCCC
Q 041476 240 E---EKASGIFNLLS---KMKFLLLLDDIWE 264 (397)
Q Consensus 240 ~---~~~~~l~~~L~---~kr~LlVlDdv~~ 264 (397)
+ ++...+...++ .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 2 33444555554 4566999999853
No 96
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.95 E-value=0.0048 Score=59.04 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+.+|.++|++|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998877
No 97
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.91 E-value=0.0043 Score=57.09 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCC---------CCC----CeEEEEEeCCcCCHHHHHHHHHHhhCcc------
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTP---------NYF----DIVIWVVVSKDMQLERIQQKIGERIGWL------ 234 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~---------~~f----~~~~wv~vs~~~~~~~i~~~i~~~l~~~------ 234 (397)
.-.++.|.|++|+|||+||.+++....... ..- ..++|++....++..++.+. ++.++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 447999999999999999999887531000 111 57889998887776666543 3444322
Q ss_pred -----cCCCHH---HHHHHHHHHhcC--CcEEEEEecCC
Q 041476 235 -----QNRSFE---EKASGIFNLLSK--MKFLLLLDDIW 263 (397)
Q Consensus 235 -----~~~~~~---~~~~~l~~~L~~--kr~LlVlDdv~ 263 (397)
...+.+ +....+...++. +.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 122333 244455565554 45699999985
No 98
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.91 E-value=0.00095 Score=56.43 Aligned_cols=116 Identities=16% Similarity=0.067 Sum_probs=62.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC---cCCHHHHHHHHHHhh---Ccc---cCC-------C
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK---DMQLERIQQKIGERI---GWL---QNR-------S 238 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~i~~~i~~~l---~~~---~~~-------~ 238 (397)
-..|.|++..|.||||+|--+.-+.. .+=..+.++..-. ......++..+.-.+ +.. ... .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 35677777778999999988877762 3333455554332 233344444431000 000 000 1
Q ss_pred HHHHHHHHHHHhcCCcE-EEEEecCCC-----chhhhhcCCCCCCCCCCCcEEEEEcCChhh
Q 041476 239 FEEKASGIFNLLSKMKF-LLLLDDIWE-----RIDLAKMGVPFPASSRNASKIVFTTRLVDV 294 (397)
Q Consensus 239 ~~~~~~~l~~~L~~kr~-LlVlDdv~~-----~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v 294 (397)
.......+.+.+.+.+| |||||++-. ....+.+... +........||+|+|...-
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~-l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISA-LNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHH-HHTSCTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHH-HHhCcCCCEEEEECCCCcH
Confidence 12233445566666666 999999832 1222233222 2333446789999998643
No 99
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.90 E-value=0.0054 Score=53.06 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=32.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccC---CCCCCeEEEEEeCCcCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHT---PNYFDIVIWVVVSKDMQ 219 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~ 219 (397)
.-.+++|+|++|+|||||++.+....... .......+|+.......
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 34699999999999999999998754110 01234678887655444
No 100
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.85 E-value=0.0042 Score=57.88 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC----CeEEEEEeCCcCCHHHHHHHHHHhhCcc-----------cCCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYF----DIVIWVVVSKDMQLERIQQKIGERIGWL-----------QNRS 238 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f----~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~~~~ 238 (397)
.-.++.|+|++|+|||||++.++... ...... ..++|++....+....+ ..+++..+.. ...+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 45799999999999999999998775 111111 24588887665443333 3344443321 1111
Q ss_pred ---HHHHHHHHHHHhc------CCcEEEEEecCCC
Q 041476 239 ---FEEKASGIFNLLS------KMKFLLLLDDIWE 264 (397)
Q Consensus 239 ---~~~~~~~l~~~L~------~kr~LlVlDdv~~ 264 (397)
..+....+...+. .+.-+||||.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 2234445555554 4678999999864
No 101
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.85 E-value=0.0078 Score=57.07 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=53.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccC---CCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-----------cCCCH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHT---PNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-----------QNRSF 239 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~~~~~ 239 (397)
.-.++.|+|++|+|||||+..++-..... ...-..++|++....++...+. .+++.++.. ...+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCCh
Confidence 34699999999999999999876433110 1133568898877766555433 355554432 12222
Q ss_pred HH---HHHHHHHHhc-CCcEEEEEecCC
Q 041476 240 EE---KASGIFNLLS-KMKFLLLLDDIW 263 (397)
Q Consensus 240 ~~---~~~~l~~~L~-~kr~LlVlDdv~ 263 (397)
.. ....+...+. .+.-+||+|.+-
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 22 2233333333 467799999874
No 102
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.80 E-value=0.0033 Score=58.72 Aligned_cols=94 Identities=15% Similarity=0.096 Sum_probs=53.0
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCC-HHHHHHHHHHhhCcc-----cCC
Q 041476 165 KVWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQ-LERIQQKIGERIGWL-----QNR 237 (397)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~i~~~i~~~l~~~-----~~~ 237 (397)
+.++.+.. ..-..++|+|++|+|||||++.+.+........+.+ +++-+++... ..+ +.+.+... ...
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev~~----~~~~~~~~vV~atade 237 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEVTE----MQRLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHHHH----HHTTCSSEEEEECTTS
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHHHH----HHHHhCeEEEEeCCCC
Confidence 44555543 345689999999999999999988765211223333 4577776542 223 33333211 111
Q ss_pred CHHHHH------HHHHHHh--cCCcEEEEEecCC
Q 041476 238 SFEEKA------SGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 238 ~~~~~~------~~l~~~L--~~kr~LlVlDdv~ 263 (397)
...... -.+.+++ +++..||++||+-
T Consensus 238 p~~~r~~~a~~alt~AEyfrd~G~dVLil~DslT 271 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 271 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCch
Confidence 111111 1122333 4799999999984
No 103
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.78 E-value=0.00054 Score=59.52 Aligned_cols=108 Identities=15% Similarity=-0.061 Sum_probs=60.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc----cCCCHHHHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL----QNRSFEEKASGIFNL 249 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~----~~~~~~~~~~~l~~~ 249 (397)
.-.++.|+|+.|+||||++..+.++.. .+-..++.+....+. + ....+++.++.. ......+..+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~---~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE---YADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 347899999999999999998888872 222234444333221 1 122344444432 122334455555555
Q ss_pred hcCCcE-EEEEecCCC--chhhhhcCCCCCCCCCCCcEEEEEcCC
Q 041476 250 LSKMKF-LLLLDDIWE--RIDLAKMGVPFPASSRNASKIVFTTRL 291 (397)
Q Consensus 250 L~~kr~-LlVlDdv~~--~~~~~~l~~~l~~~~~~gs~IlvTtR~ 291 (397)
+.+.++ +||+|.+.. ....+.+.. +.+ .|..||+|-+.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~--L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI--LAE--NGFVVIISGLD 125 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH--HHH--TTCEEEEECCS
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH--HHh--CCCeEEEEecc
Confidence 544445 999999863 223233321 112 26789999883
No 104
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.75 E-value=0.0016 Score=55.58 Aligned_cols=41 Identities=24% Similarity=0.435 Sum_probs=32.9
Q ss_pred chhhHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 159 LESTFDKVWRCLVE---GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 159 r~~~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|+..++.|.+.+.. ....+++|.|+.|+||||+++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45567777777764 345799999999999999999998765
No 105
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.74 E-value=0.0092 Score=57.04 Aligned_cols=26 Identities=35% Similarity=0.345 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.++|++|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999998776
No 106
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.65 E-value=0.012 Score=56.59 Aligned_cols=96 Identities=21% Similarity=0.243 Sum_probs=55.9
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHHhhCc--c-----cC
Q 041476 166 VWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGERIGW--L-----QN 236 (397)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~l~~--~-----~~ 236 (397)
.++.|.. .+-+.+.|+|.+|+|||||++.+..... ..+.+..+++.+++.. ...+++.++...-.. . ..
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~ 218 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQM 218 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECT
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcC
Confidence 3444443 2335688999999999999999988762 1223455677776654 455666656433110 0 11
Q ss_pred CC-HH-HH-----HHHHHHHh---cCCcEEEEEecCC
Q 041476 237 RS-FE-EK-----ASGIFNLL---SKMKFLLLLDDIW 263 (397)
Q Consensus 237 ~~-~~-~~-----~~~l~~~L---~~kr~LlVlDdv~ 263 (397)
.+ .. .. .-.+.+++ +++..||++||+.
T Consensus 219 ~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 219 NEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11 11 11 11233333 5789999999994
No 107
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.65 E-value=0.012 Score=56.52 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.++|.+|+||||++..++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998877
No 108
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.62 E-value=0.0062 Score=52.72 Aligned_cols=111 Identities=21% Similarity=0.137 Sum_probs=59.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc--------------------
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------------------- 234 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------------------- 234 (397)
-.++.|.|++|+|||||++.+...... .-..++|+.... ....+...+. .++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccC
Confidence 468999999999999999999866521 112456665433 3444444332 22211
Q ss_pred -----cCCCHHHHHHHHHHHhcC-CcE--EEEEecCCC-----chhhhhcCCCCCC--CCCCCcEEEEEcCCh
Q 041476 235 -----QNRSFEEKASGIFNLLSK-MKF--LLLLDDIWE-----RIDLAKMGVPFPA--SSRNASKIVFTTRLV 292 (397)
Q Consensus 235 -----~~~~~~~~~~~l~~~L~~-kr~--LlVlDdv~~-----~~~~~~l~~~l~~--~~~~gs~IlvTtR~~ 292 (397)
...+..+....+...+.. ++- +||||.+.. ......+... +. ....|..||++|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~-l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYY-LKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHH-HHHHHHHTTEEEEEEEC--
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHH-HHHHHHhCCCeEEEEeccC
Confidence 011445555555554432 333 999999852 1111221111 10 112467788888765
No 109
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.61 E-value=0.01 Score=54.47 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~ 229 (397)
.-.++.|.|.+|+||||||.+++.... ..+ ..++|++.. .+..++...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE--~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLE--MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECC--CCHHHHHHHHHH
Confidence 346899999999999999999987762 222 577887765 334555544443
No 110
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.60 E-value=0.008 Score=54.60 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=47.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHHhhCcc--cCCCHHHHHHHHHHHh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGERIGWL--QNRSFEEKASGIFNLL 250 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~~l~~~--~~~~~~~~~~~l~~~L 250 (397)
...++.|+|++|+||||++..++.......+ ..+..+.... .....+.+....+..+.. ...+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h
Confidence 3579999999999999999999877621112 2344554322 223344444444444432 12233333333332 3
Q ss_pred cCCcEEEEEecC
Q 041476 251 SKMKFLLLLDDI 262 (397)
Q Consensus 251 ~~kr~LlVlDdv 262 (397)
.+.=++++|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 33458889943
No 111
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.55 E-value=0.0015 Score=60.41 Aligned_cols=151 Identities=14% Similarity=0.164 Sum_probs=83.0
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCc
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGW 233 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (397)
+.++|++..+..+...+..+ ..+.++|++|+|||+||+.+.+.. ...| ..+.++......++..... .
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~---~~~~---~~i~~~~~~~~~~l~g~~~----~ 94 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM---DLDF---HRIQFTPDLLPSDLIGTMI----Y 94 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT---TCCE---EEEECCTTCCHHHHHEEEE----E
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh---CCCe---EEEecCCCCChhhcCCcee----e
Confidence 45799999999988887764 468899999999999999999876 2222 2334433333333221110 0
Q ss_pred ccCCCHHHHHHHHHHHhcCC---cEEEEEecCCCc--hhhhhcCCCC------C----CCCCCCcEEEEEcCChh-----
Q 041476 234 LQNRSFEEKASGIFNLLSKM---KFLLLLDDIWER--IDLAKMGVPF------P----ASSRNASKIVFTTRLVD----- 293 (397)
Q Consensus 234 ~~~~~~~~~~~~l~~~L~~k---r~LlVlDdv~~~--~~~~~l~~~l------~----~~~~~gs~IlvTtR~~~----- 293 (397)
...... . .+... ..+|+||++... .....+...+ . ........|+.|+....
T Consensus 95 ~~~~~~------~--~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~ 166 (331)
T 2r44_A 95 NQHKGN------F--EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTY 166 (331)
T ss_dssp ETTTTE------E--EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCC
T ss_pred cCCCCc------e--EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcc
Confidence 000000 0 00111 259999999642 2122111100 0 00122455665665322
Q ss_pred -hh-hhhcc-CceeecCCCChHhHHHHHHHHhCC
Q 041476 294 -VC-GLMEA-QKTFKVECLADQDAWELFQKKVGE 324 (397)
Q Consensus 294 -v~-~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~ 324 (397)
+. ....- ...+.+.+++.++-.+++.+.+..
T Consensus 167 ~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 167 PLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 11 11111 225889999999999999887653
No 112
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.55 E-value=0.0074 Score=51.67 Aligned_cols=74 Identities=16% Similarity=0.097 Sum_probs=45.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC-----------cccCCCHHHHHHH
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG-----------WLQNRSFEEKASG 245 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~-----------~~~~~~~~~~~~~ 245 (397)
+|.|.|++|+||+|.|+.+.+.+. | .++ +..+++++-+..-. .....+.+-....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~-----~~i----stGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~l 67 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----F-----VHI----STGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIAL 67 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----C-----EEE----EHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----C-----eEE----cHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHH
Confidence 578999999999999999998871 1 122 22344443322111 1122344445566
Q ss_pred HHHHhcCCcEEEEEecCCCc
Q 041476 246 IFNLLSKMKFLLLLDDIWER 265 (397)
Q Consensus 246 l~~~L~~kr~LlVlDdv~~~ 265 (397)
+.+.+..... +|||++-..
T Consensus 68 v~~~l~~~~~-~ilDGfPRt 86 (206)
T 3sr0_A 68 IEEVFPKHGN-VIFDGFPRT 86 (206)
T ss_dssp HHHHCCSSSC-EEEESCCCS
T ss_pred HHHhhccCCc-eEecCCchh
Confidence 7777765544 689998643
No 113
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.53 E-value=0.0015 Score=54.41 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+|.|+|++|+||||+++.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999886
No 114
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.52 E-value=0.0014 Score=54.00 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+|.|.|++|+||||+++.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999886
No 115
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.52 E-value=0.002 Score=55.25 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=29.2
Q ss_pred hHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 162 TFDKVWRCLVE--GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 162 ~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-+++|.+.+.. ....+++|+|+.|+|||||++.+....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455555543 355799999999999999999998876
No 116
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.52 E-value=0.0038 Score=64.29 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=76.9
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCH
Q 041476 154 PTIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQL 220 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 220 (397)
.++.|.++.++.|.+.+.- ...+-+.++|++|.|||.||+.+++.. ... ++.++ .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEec----c
Confidence 3567777777777665431 134568899999999999999999987 222 23332 1
Q ss_pred HHHHHHHHHhhCcccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCch--------h--------hhhcCCCCC-CCCCCC
Q 041476 221 ERIQQKIGERIGWLQNRSFEEKASGIFNLL-SKMKFLLLLDDIWERI--------D--------LAKMGVPFP-ASSRNA 282 (397)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~--------~--------~~~l~~~l~-~~~~~g 282 (397)
.+ ++... ...+. .....+.+.- +..+++|+||+++... . ...+...+- .....+
T Consensus 545 ~~----l~s~~---vGese-~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~ 616 (806)
T 3cf2_A 545 PE----LLTMW---FGESE-ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616 (806)
T ss_dssp HH----HHTTT---CSSCH-HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSS
T ss_pred ch----hhccc---cchHH-HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCC
Confidence 11 11111 11222 2333333333 4578999999986310 0 111111100 011223
Q ss_pred cEEEEEcCChhh-----hhhhccCceeecCCCChHhHHHHHHHHhCCccCCCCCChHHHHHHHHHHcCCc
Q 041476 283 SKIVFTTRLVDV-----CGLMEAQKTFKVECLADQDAWELFQKKVGEETLESHPDIPELAQTVANECSGL 347 (397)
Q Consensus 283 s~IlvTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 347 (397)
.-||.||..... .+.-.-+..+.+...+.++-.++|+.++.......+.+ ...|++.+.|+
T Consensus 617 V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d----l~~la~~t~g~ 682 (806)
T 3cf2_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGF 682 (806)
T ss_dssp EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred EEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHhCCCC
Confidence 334434443332 11112356777877777777778876654322122222 34555666654
No 117
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.47 E-value=0.031 Score=53.69 Aligned_cols=97 Identities=25% Similarity=0.325 Sum_probs=62.8
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHHh--hC------cc
Q 041476 165 KVWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGER--IG------WL 234 (397)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~--l~------~~ 234 (397)
+.++.|.. .+-.-++|.|.+|+|||+|+..+.+... +.+-+.++++-+.+.. ...++++++... +. ..
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 45566554 3456889999999999999999988752 3455777888887765 456777777654 21 11
Q ss_pred -----c-CCCHH------HHHHHHHHHh---cCCcEEEEEecCC
Q 041476 235 -----Q-NRSFE------EKASGIFNLL---SKMKFLLLLDDIW 263 (397)
Q Consensus 235 -----~-~~~~~------~~~~~l~~~L---~~kr~LlVlDdv~ 263 (397)
+ +.... ...-.+.+++ +++..||++||+-
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1 11111 1112233444 4689999999984
No 118
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.44 E-value=0.016 Score=55.91 Aligned_cols=96 Identities=24% Similarity=0.335 Sum_probs=63.8
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHHh--hC-------cc
Q 041476 166 VWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGER--IG-------WL 234 (397)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~--l~-------~~ 234 (397)
.++.|.. .+-.-++|.|.+|+|||+|+.++.+... +.+-+.++++-+.+.. ...++++++... +. ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 4555543 3456789999999999999999998752 3456788888888765 566777777754 21 11
Q ss_pred ------cCCC------HHHHHHHHHHHhc---CCcEEEEEecCC
Q 041476 235 ------QNRS------FEEKASGIFNLLS---KMKFLLLLDDIW 263 (397)
Q Consensus 235 ------~~~~------~~~~~~~l~~~L~---~kr~LlVlDdv~ 263 (397)
.+.. .....-.+.++++ ++..||++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1111 1122233455554 578999999984
No 119
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.44 E-value=0.0017 Score=53.59 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+|.|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 543
No 120
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.43 E-value=0.0026 Score=62.14 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.++|++..++.+...+..+ ..+.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 35799999998888877654 578899999999999999999876
No 121
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.42 E-value=0.015 Score=55.55 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++.|+|++|+||||++..++...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999887
No 122
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.41 E-value=0.0088 Score=54.33 Aligned_cols=86 Identities=20% Similarity=0.124 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHHhhCcc-----cCCCHHHHHHHHHH
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGERIGWL-----QNRSFEEKASGIFN 248 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~~l~~~-----~~~~~~~~~~~l~~ 248 (397)
..++.++|++|+||||++..++.... ..-..+.++.... .+...+.+....+..+.. ...+.........+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 57899999999999999999988772 1222455555432 222333344445554443 12344444444444
Q ss_pred HhcCCcE-EEEEecCC
Q 041476 249 LLSKMKF-LLLLDDIW 263 (397)
Q Consensus 249 ~L~~kr~-LlVlDdv~ 263 (397)
.++.+.| ++++|-.-
T Consensus 175 ~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEeCCC
Confidence 4442344 88888753
No 123
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.40 E-value=0.0034 Score=58.60 Aligned_cols=114 Identities=12% Similarity=0.098 Sum_probs=63.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcC
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSK 252 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~ 252 (397)
....+++|+|+.|+|||||.+.+....... .-..++.+.-.-.+..... ..+..+.. ...+.......+...|..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~-~~~v~q~~--~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESK-KCLVNQRE--VHRDTLGFSEALRSALRE 195 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEE--BTTTBSCHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhcc-ccceeeee--eccccCCHHHHHHHHhhh
Confidence 445699999999999999999987765110 0112222211111100000 00000000 111112344578888999
Q ss_pred CcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhhh
Q 041476 253 MKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDVC 295 (397)
Q Consensus 253 kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v~ 295 (397)
.+=+|++|++-+.+.+..+... ...|.-||+|+...+..
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~----~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTA----AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHH----HHTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCCHHHHHHHHHH----HhcCCEEEEEEccChHH
Confidence 9999999999876555543222 12356688888887664
No 124
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.40 E-value=0.0031 Score=59.15 Aligned_cols=45 Identities=22% Similarity=0.171 Sum_probs=36.8
Q ss_pred ccccchhhHHHHHHHHh-------------c--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 155 TIVGLESTFDKVWRCLV-------------E--GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~-------------~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|.+..++.+...+. . .....+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899988888888773 1 134678999999999999999999886
No 125
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.39 E-value=0.0091 Score=54.45 Aligned_cols=86 Identities=19% Similarity=0.221 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCH--HHHHHHHHHhhCcc-----cCCCHHHH-HHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQL--ERIQQKIGERIGWL-----QNRSFEEK-ASG 245 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~--~~i~~~i~~~l~~~-----~~~~~~~~-~~~ 245 (397)
...++.|+|++|+||||++..++.... ..-..+.++... .+.. .+-+...++..+.. ...+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 457999999999999999999998772 112234444432 2222 22233444444433 11222222 233
Q ss_pred HHHHhcCCcEEEEEecCC
Q 041476 246 IFNLLSKMKFLLLLDDIW 263 (397)
Q Consensus 246 l~~~L~~kr~LlVlDdv~ 263 (397)
+...+..+.-++++|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444455555588999764
No 126
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.37 E-value=0.0022 Score=54.60 Aligned_cols=26 Identities=38% Similarity=0.337 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.|+|++|+||||+++.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 127
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.35 E-value=0.0022 Score=53.28 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINN 197 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~ 197 (397)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 128
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.34 E-value=0.0028 Score=54.00 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 172 EGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 172 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.....+|.|+|++|+||||+++.+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999998876
No 129
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.34 E-value=0.0015 Score=60.71 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=34.9
Q ss_pred CccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.+..+..+...+.......+.|+|++|+|||+||+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3579988866655444443334458899999999999999999876
No 130
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.33 E-value=0.0021 Score=53.72 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+++|+|++|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998765
No 131
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.32 E-value=0.023 Score=52.09 Aligned_cols=96 Identities=16% Similarity=0.061 Sum_probs=50.9
Q ss_pred ccchhhHHHHHHHHhcC----CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHH--HHHh
Q 041476 157 VGLESTFDKVWRCLVEG----QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQK--IGER 230 (397)
Q Consensus 157 vGr~~~~~~l~~~L~~~----~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~--i~~~ 230 (397)
+|-...+..+...+... .+.+++|.|+.|+|||||++.+..-. .....-..+..++....+-....+.. +...
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll-~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~ 148 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL-SRWPDHPNVEVITTDGFLYSNAKLEKQGLMKR 148 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH-TTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGG
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh-cccCCCCeEEEEeecccccchhhhhhHHHHhh
Confidence 34444444444444332 34599999999999999999998776 21111123444554332221222221 1111
Q ss_pred hCcccCCCHHHHHHHHHHHhcCC
Q 041476 231 IGWLQNRSFEEKASGIFNLLSKM 253 (397)
Q Consensus 231 l~~~~~~~~~~~~~~l~~~L~~k 253 (397)
.+.....+...+.+.+.....++
T Consensus 149 ~g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 149 KGFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp TTSGGGBCHHHHHHHHHHHHTTC
T ss_pred ccCcccccHHHHHHHHHhhhccc
Confidence 22224556666777776666555
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.31 E-value=0.0025 Score=53.66 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+++|+|++|+|||||++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999997753
No 133
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.30 E-value=0.0024 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+.|.|+|++|+||||+++.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999876
No 134
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.29 E-value=0.0021 Score=53.19 Aligned_cols=24 Identities=33% Similarity=0.366 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+|+|+|++|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 135
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.28 E-value=0.0018 Score=54.52 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.|.|+||+|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999998775
No 136
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.28 E-value=0.016 Score=50.67 Aligned_cols=40 Identities=25% Similarity=0.217 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK 216 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 216 (397)
.-.++.|.|++|+|||||+.+++..... .-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 3468999999999999999888766521 123577777544
No 137
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.27 E-value=0.0042 Score=58.49 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=35.7
Q ss_pred CccccchhhHHHHHHHHhc------------------------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVE------------------------------GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~------------------------------~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.+..++.|...+.. .....+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3468888888777766620 123568899999999999999999876
No 138
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.24 E-value=0.0028 Score=53.95 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....+++|+|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998775
No 139
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.23 E-value=0.0027 Score=53.37 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+|.|.|++|+||||+++.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 140
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.22 E-value=0.0024 Score=54.45 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|.|++|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 141
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.21 E-value=0.003 Score=53.09 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|.|++|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 142
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.19 E-value=0.0051 Score=53.18 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=29.7
Q ss_pred hHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 162 TFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+.+...+.......|.|+|.+|+|||||+..+....
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34444455555567899999999999999999998875
No 143
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.18 E-value=0.003 Score=52.99 Aligned_cols=24 Identities=25% Similarity=0.363 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+|.|.|++|+||||+++.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 144
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.17 E-value=0.0028 Score=52.82 Aligned_cols=25 Identities=44% Similarity=0.444 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|.|+|++|+||||+++.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999876
No 145
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.16 E-value=0.0095 Score=66.84 Aligned_cols=82 Identities=17% Similarity=0.105 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
..+++.|+|++|+|||+||.++..... ..=..++|+++...++... ++.++.. .....++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 567999999999999999999988762 2334678888877766554 3344421 333445666666
Q ss_pred HHHhc-CCcEEEEEecCC
Q 041476 247 FNLLS-KMKFLLLLDDIW 263 (397)
Q Consensus 247 ~~~L~-~kr~LlVlDdv~ 263 (397)
+...+ .+..+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 65554 467799999984
No 146
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.12 E-value=0.0035 Score=53.80 Aligned_cols=26 Identities=31% Similarity=0.261 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+++|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998876
No 147
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.12 E-value=0.0091 Score=50.89 Aligned_cols=25 Identities=20% Similarity=0.338 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|.|++|+||||+++.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999987
No 148
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.11 E-value=0.068 Score=49.28 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=34.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
.-.++.|.|.+|+||||||..++..... .-..++|++.. .+..++...++
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rll 94 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRAL 94 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHH
Confidence 3468999999999999999999888632 22356676653 34455555543
No 149
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.09 E-value=0.17 Score=48.73 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=33.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKI 227 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i 227 (397)
.-.++.|.|.+|+|||||+.+++..... ..-..++|++... +..++...+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSS--CHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCC--CHHHHHHHH
Confidence 3468999999999999999999887621 1122577776543 334444443
No 150
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.09 E-value=0.0031 Score=53.86 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.|+|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998876
No 151
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.09 E-value=0.005 Score=53.04 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=32.1
Q ss_pred chhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 159 LESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 159 r~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++..+.+...+.....+++.|+|.+|+|||||+..+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455555555555577899999999999999999998876
No 152
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.09 E-value=0.0033 Score=53.48 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 153
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.08 E-value=0.0039 Score=53.84 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.++|.|.|++|+||||.|+.+.+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999887
No 154
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.07 E-value=0.0031 Score=53.05 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 155
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.05 E-value=0.0041 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++.|+|++|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 156
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.05 E-value=0.027 Score=51.82 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....+++|+|+.|+||||+++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998876
No 157
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.04 E-value=0.0066 Score=54.92 Aligned_cols=26 Identities=31% Similarity=0.233 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998875
No 158
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.03 E-value=0.004 Score=52.47 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+..+|.|.|++|+||||+++.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998876
No 159
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.03 E-value=0.0033 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..|.|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999886
No 160
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.02 E-value=0.0039 Score=52.26 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.|.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999887
No 161
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.02 E-value=0.0039 Score=51.26 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.|.|+.|+||||+++.+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999876
No 162
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.02 E-value=0.0041 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 163
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.00 E-value=0.0072 Score=54.73 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=44.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHh------hC---cccCCCHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGER------IG---WLQNRSFEEKAS 244 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~------l~---~~~~~~~~~~~~ 244 (397)
...+|+|.|+.|+|||||++.+................|+...-+-.......+... +. .....+...+.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~ 109 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQE 109 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHHH
Confidence 567999999999999999999887762100012234444544433334444444332 11 123445555555
Q ss_pred HHHHHhcC
Q 041476 245 GIFNLLSK 252 (397)
Q Consensus 245 ~l~~~L~~ 252 (397)
.+.....+
T Consensus 110 ~l~~l~~g 117 (290)
T 1odf_A 110 VLNTIFNN 117 (290)
T ss_dssp HHHHHTC-
T ss_pred HHHHhhcc
Confidence 55555444
No 164
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.99 E-value=0.004 Score=55.26 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998876
No 165
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.98 E-value=0.004 Score=52.82 Aligned_cols=23 Identities=39% Similarity=0.713 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 166
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.97 E-value=0.0043 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999763
No 167
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.96 E-value=0.0045 Score=52.65 Aligned_cols=25 Identities=36% Similarity=0.282 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+++|+|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 168
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.96 E-value=0.0039 Score=51.66 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 041476 175 FGIIGLYGMGGVGKTTLLAQIN 196 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~ 196 (397)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 169
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.95 E-value=0.0043 Score=51.85 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|+|+.|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998776
No 170
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.94 E-value=0.0084 Score=55.50 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=30.6
Q ss_pred cchhhHHHHHHHHh----cCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 158 GLESTFDKVWRCLV----EGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 158 Gr~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.+.-.+++++.+. .+....|.|+|++|+||||+++.++...
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34444555555553 3456679999999999999999887765
No 171
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.94 E-value=0.0059 Score=58.50 Aligned_cols=46 Identities=24% Similarity=0.197 Sum_probs=36.7
Q ss_pred CccccchhhHHHHHHHHhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVE--------------GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.+..+..+...+.. ...+-+.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578988888887766632 134678999999999999999999886
No 172
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.94 E-value=0.0047 Score=52.86 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+++|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998875
No 173
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.92 E-value=0.0037 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999876
No 174
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.92 E-value=0.0038 Score=53.11 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998754
No 175
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.92 E-value=0.0051 Score=52.32 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.|.|++|+||||+++.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998875
No 176
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.90 E-value=0.0051 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
....|.|+|++|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999887
No 177
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.90 E-value=0.0045 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+|+|+|++|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 178
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.90 E-value=0.0049 Score=54.29 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+..+++|+|++|+|||||++.+.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999776
No 179
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.87 E-value=0.0049 Score=52.05 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|.|++|+||||+|+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 180
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.87 E-value=0.0057 Score=51.84 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
.+..+|+|+|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999999774
No 181
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.85 E-value=0.0054 Score=52.03 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+++.|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 182
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.85 E-value=0.0053 Score=51.33 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..|.|.|++|+||||+++.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998876
No 183
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.85 E-value=0.0044 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 184
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.84 E-value=0.039 Score=49.99 Aligned_cols=85 Identities=20% Similarity=0.151 Sum_probs=47.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHHhhCcc-----cCCCHHHHHH-HHH
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGERIGWL-----QNRSFEEKAS-GIF 247 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-----~~~~~~~~~~-~l~ 247 (397)
..+++|+|.+|+||||++..++.... ..-..+.++...... .....+....+..+.. ...+..++.. .+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999988772 112234444432211 1112233444444433 1233444433 333
Q ss_pred HHhcCCcEEEEEecC
Q 041476 248 NLLSKMKFLLLLDDI 262 (397)
Q Consensus 248 ~~L~~kr~LlVlDdv 262 (397)
.......=++|+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 333344458889976
No 185
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.82 E-value=0.0035 Score=52.22 Aligned_cols=25 Identities=32% Similarity=0.378 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998876
No 186
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.80 E-value=0.023 Score=48.25 Aligned_cols=82 Identities=21% Similarity=0.109 Sum_probs=44.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHHHHH
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGIFNL 249 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l~~~ 249 (397)
.|+|-|.-|+||||.++.+++... .....+++..-+......+.+..++..-... -..+..+....+...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~---~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~ 78 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE---KRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQY 78 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999882 2222334444333334444555544332211 011122333445555
Q ss_pred hcCCcEEEEEecC
Q 041476 250 LSKMKFLLLLDDI 262 (397)
Q Consensus 250 L~~kr~LlVlDdv 262 (397)
|... ..+|.|-.
T Consensus 79 L~~g-~~Vi~DRy 90 (197)
T 3hjn_A 79 LSEG-YAVLLDRY 90 (197)
T ss_dssp HTTT-CEEEEESC
T ss_pred HHCC-CeEEeccc
Confidence 5433 45677754
No 187
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.79 E-value=0.0059 Score=51.20 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|.|++|+||||+++.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 188
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.78 E-value=0.048 Score=52.78 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+++|+|+.|+|||||++.+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35699999999999999999998876
No 189
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.76 E-value=0.0054 Score=52.17 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINN 197 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~ 197 (397)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4789999999999999999987
No 190
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.75 E-value=0.0063 Score=54.17 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 191
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.73 E-value=0.0064 Score=51.93 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|.|+.|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 192
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.72 E-value=0.0065 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|.|.|++|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998876
No 193
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.71 E-value=0.0068 Score=51.72 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|+|+|++|+||||+++.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998764
No 194
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.71 E-value=0.0058 Score=52.26 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34699999999999999999998765
No 195
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.71 E-value=0.0058 Score=52.11 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINN 197 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~ 197 (397)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 196
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.70 E-value=0.0066 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|.|+.|+||||+++.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 197
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.70 E-value=0.0083 Score=53.11 Aligned_cols=26 Identities=38% Similarity=0.344 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998876
No 198
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.69 E-value=0.0064 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 199
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.68 E-value=0.012 Score=51.71 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....|.|.|++|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55689999999999999999998876
No 200
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.68 E-value=0.0071 Score=53.48 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....+|+|.|++|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355789999999999999999998865
No 201
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.68 E-value=0.0066 Score=49.78 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|.|.|++|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 202
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.66 E-value=0.0065 Score=52.73 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|.|.|++|+||||+++.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998875
No 203
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.65 E-value=0.014 Score=49.14 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.65 E-value=0.085 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+..+|.|+|.+|+||||++..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998766
No 205
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.62 E-value=0.0059 Score=52.80 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998764
No 206
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.58 E-value=0.008 Score=50.98 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|.|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998875
No 207
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.57 E-value=0.0073 Score=51.86 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 208
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.57 E-value=0.0081 Score=51.83 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|.|.|++|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999886
No 209
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.55 E-value=0.007 Score=52.30 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|.|.|++|+||||+++.+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999887
No 210
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.54 E-value=0.0085 Score=49.45 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+++.|.|+.|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999999876
No 211
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.54 E-value=0.033 Score=52.04 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=35.7
Q ss_pred HHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc
Q 041476 164 DKVWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD 217 (397)
Q Consensus 164 ~~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 217 (397)
-++++.+.. ..-.-++|+|.+|+|||+|+..+.+........+.+ +++-+++.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 456677655 345688999999999999999998875211122333 45666654
No 212
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.54 E-value=0.0089 Score=52.61 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998764
No 213
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.54 E-value=0.0075 Score=53.38 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999998654
No 214
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.52 E-value=0.0078 Score=52.08 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998875
No 215
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.52 E-value=0.022 Score=54.39 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=57.7
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCC-CCCC-eEEEEEeCCcC-CHHHHHHHHHHhh--Ccc-----
Q 041476 166 VWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTP-NYFD-IVIWVVVSKDM-QLERIQQKIGERI--GWL----- 234 (397)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-~~f~-~~~wv~vs~~~-~~~~i~~~i~~~l--~~~----- 234 (397)
.++.|.. .+-.-++|.|.+|+|||+|+.++.+.. ... ++-+ .++++-+.+.. ...++++++...- ...
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~a 219 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQA-TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMN 219 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHH-HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEE
Confidence 3444433 233457899999999999999999886 221 1112 66677776553 5667777765532 111
Q ss_pred -cCCCHHH------HHHHHHHHhc---CCcEEEEEecCC
Q 041476 235 -QNRSFEE------KASGIFNLLS---KMKFLLLLDDIW 263 (397)
Q Consensus 235 -~~~~~~~------~~~~l~~~L~---~kr~LlVlDdv~ 263 (397)
.+..... ..-.+.++++ ++..||++||+-
T Consensus 220 tsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 220 LANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1122111 1123455553 689999999984
No 216
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.51 E-value=0.0088 Score=54.74 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+++|.|+.|+|||||++.+..-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 45799999999999999999998876
No 217
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.51 E-value=0.0085 Score=48.95 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44699999999999999999998765
No 218
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.50 E-value=0.012 Score=50.09 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=27.5
Q ss_pred HHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 163 FDKVWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 163 ~~~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+..+..++.+ ++...+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445555543 123479999999999999999998886
No 219
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=95.50 E-value=0.061 Score=51.83 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=56.1
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHH-HHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHHHhhCcc-------c
Q 041476 166 VWRCLVE-GQFGIIGLYGMGGVGKTTLL-AQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIGERIGWL-------Q 235 (397)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa-~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~ 235 (397)
.++.|.. ..-.-++|.|..|+|||+|+ ..+.+.. ..-..++++-+++.. ...++.+++.+.-... +
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 4555543 34467889999999999996 5666542 222246788888764 4667777765542111 1
Q ss_pred C-CCHH-H-----HHHHHHHHh--cCCcEEEEEecCC
Q 041476 236 N-RSFE-E-----KASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 236 ~-~~~~-~-----~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
. .... . ..-.+.+++ +++..||++||+-
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 1 1111 1 111233333 4789999999984
No 220
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.50 E-value=0.017 Score=53.25 Aligned_cols=106 Identities=13% Similarity=0.041 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcccCCCHHHHHHHHHHHhcCCcE
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWLQNRSFEEKASGIFNLLSKMKF 255 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~L~~kr~ 255 (397)
.+++|+|+.|+|||||++.+..-.. .-...+.+.-......... -+.+..-.. ........+...|..++=
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~----~~~g~i~i~~~~e~~~~~~----~~~i~~~~g-gg~~~r~~la~aL~~~p~ 242 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP----KEERIISIEDTEEIVFKHH----KNYTQLFFG-GNITSADCLKSCLRMRPD 242 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC----TTSCEEEEESSCCCCCSSC----SSEEEEECB-TTBCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc----CCCcEEEECCeeccccccc----hhEEEEEeC-CChhHHHHHHHHhhhCCC
Confidence 5899999999999999999988761 1234555542221110000 000000000 122334556777888888
Q ss_pred EEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhh
Q 041476 256 LLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDV 294 (397)
Q Consensus 256 LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v 294 (397)
+|++|++-+...++.+... .. .+.-+|+||.....
T Consensus 243 ilildE~~~~e~~~~l~~~--~~--g~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 243 RIILGELRSSEAYDFYNVL--CS--GHKGTLTTLHAGSS 277 (330)
T ss_dssp EEEECCCCSTHHHHHHHHH--HT--TCCCEEEEEECSSH
T ss_pred EEEEcCCChHHHHHHHHHH--hc--CCCEEEEEEcccHH
Confidence 9999999775544433221 11 12236666665443
No 221
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.49 E-value=0.0081 Score=51.61 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998775
No 222
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.48 E-value=0.042 Score=50.07 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+++|+|+.|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44699999999999999999998875
No 223
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.46 E-value=0.0043 Score=53.15 Aligned_cols=23 Identities=35% Similarity=0.761 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+|+|.|+.|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 224
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.46 E-value=0.024 Score=56.87 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=37.2
Q ss_pred ccccchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 155 TIVGLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 5799988888887777655 588999999999999999999876
No 225
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.41 E-value=0.0093 Score=54.35 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+..+++|+|++|+|||||++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 226
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.37 E-value=0.014 Score=50.01 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....+|.|.|+.|+||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998876
No 227
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.36 E-value=0.0098 Score=50.30 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|+|+|+.|+||||+++.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998874
No 228
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.36 E-value=0.071 Score=52.18 Aligned_cols=50 Identities=14% Similarity=0.077 Sum_probs=34.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKI 227 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i 227 (397)
.-.++.|.|.+|+||||||.+++.... . .+=..++|++... +..++...+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a-~-~~g~~vl~~s~E~--s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG-T-AMGKKVGLAMLEE--SVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT-T-TSCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH-H-hcCCcEEEEeccC--CHHHHHHHH
Confidence 346889999999999999999988872 1 1123577777644 344555444
No 229
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.36 E-value=0.04 Score=53.25 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=57.0
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHH-HHHHhhhccCCCCCC-eEEEEEeCCcC-CHHHHHHHHHHhhCcc------
Q 041476 165 KVWRCLVE-GQFGIIGLYGMGGVGKTTLL-AQINNKFLHTPNYFD-IVIWVVVSKDM-QLERIQQKIGERIGWL------ 234 (397)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~~GvGKTtLa-~~v~~~~~~~~~~f~-~~~wv~vs~~~-~~~~i~~~i~~~l~~~------ 234 (397)
+.++.|.. ..-.-++|.|.+|+|||+|| ..+.+.. ..+ .++++-+++.. ...++.+++...-...
T Consensus 164 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~ 238 (515)
T 2r9v_A 164 KAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVV 238 (515)
T ss_dssp HHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred cccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEE
Confidence 34555543 34467899999999999996 4666654 245 35777777654 5667777776532211
Q ss_pred -c-CCCH-HHH-----HHHHHHHh--cCCcEEEEEecCC
Q 041476 235 -Q-NRSF-EEK-----ASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 235 -~-~~~~-~~~-----~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
+ +... ... .-.+.+++ +++..||++||+-
T Consensus 239 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 239 ASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 1 1111 111 11234444 4789999999984
No 230
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.31 E-value=0.035 Score=62.35 Aligned_cols=82 Identities=17% Similarity=0.105 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
.-+++.|.|++|+||||||.+++.... ..-..++|++....++... ++.++.. ...+.++..+.+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 457999999999999999999988873 2224688888877766431 4455432 345666666666
Q ss_pred HHHhc-CCcEEEEEecCC
Q 041476 247 FNLLS-KMKFLLLLDDIW 263 (397)
Q Consensus 247 ~~~L~-~kr~LlVlDdv~ 263 (397)
+...+ .+.-+||+|-+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 65553 456699999885
No 231
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.30 E-value=0.0095 Score=52.24 Aligned_cols=24 Identities=38% Similarity=0.303 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINN 197 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~ 197 (397)
.-.+++|+|+.|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 347999999999999999999883
No 232
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.29 E-value=0.012 Score=48.86 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|+|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998875
No 233
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.24 E-value=0.046 Score=52.73 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=56.6
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHH-HHHHhhhccCCCCCC-eEEEEEeCCcC-CHHHHHHHHHHhhCcc-------
Q 041476 166 VWRCLVE-GQFGIIGLYGMGGVGKTTLL-AQINNKFLHTPNYFD-IVIWVVVSKDM-QLERIQQKIGERIGWL------- 234 (397)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa-~~v~~~~~~~~~~f~-~~~wv~vs~~~-~~~~i~~~i~~~l~~~------- 234 (397)
.++.|.. ..-.-++|.|.+|+|||+|| ..+.+.. .-+ .++++-+++.. ...++.+++...-...
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 4555543 34467889999999999995 5676664 244 35777777654 5667777776532221
Q ss_pred cC-CCH-HHH-----HHHHHHHh--cCCcEEEEEecCC
Q 041476 235 QN-RSF-EEK-----ASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 235 ~~-~~~-~~~-----~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
+. ... ... .-.+.+++ +++..||++||+-
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 11 111 111 12234444 4789999999984
No 234
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.23 E-value=0.0097 Score=50.18 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+++|+|+.|+|||||++.+....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999988765
No 235
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.22 E-value=0.034 Score=61.60 Aligned_cols=83 Identities=17% Similarity=0.109 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
.-+++.|.|++|+||||||.+++..... .-..++|++....++.. .++.++.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 4569999999999999999999887622 23468888887776653 24455433 344566666666
Q ss_pred HHHhc-CCcEEEEEecCCC
Q 041476 247 FNLLS-KMKFLLLLDDIWE 264 (397)
Q Consensus 247 ~~~L~-~kr~LlVlDdv~~ 264 (397)
....+ .+.-+||+|-+..
T Consensus 454 ~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHhcCCCEEEECCHHH
Confidence 65553 4566999999864
No 236
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.20 E-value=0.012 Score=51.31 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|.|++|+||||+++.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 237
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.18 E-value=0.013 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINN 197 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~ 197 (397)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 238
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.17 E-value=0.087 Score=50.66 Aligned_cols=51 Identities=12% Similarity=-0.046 Sum_probs=35.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
.-.++.|.|.+|+||||||.+++..... ..-..++|++.. .+..++...++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE--~~~~~l~~R~~ 249 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLE--MPAAQLTLRMM 249 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESS--SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECC--CCHHHHHHHHH
Confidence 3468999999999999999999887621 112357777664 33455555544
No 239
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.17 E-value=0.0099 Score=52.02 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999987654
No 240
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.17 E-value=0.012 Score=51.66 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.. .+++|+|+.|+|||||.+.+..-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 36 899999999999999999997654
No 241
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.15 E-value=0.0075 Score=52.52 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-hhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQIN-NKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~-~~~ 199 (397)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 543
No 242
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.14 E-value=0.012 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++|+|.|+.|+||||+++.+....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999998876
No 243
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.14 E-value=0.014 Score=48.53 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+++.|+|+.|+|||||++.+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998875
No 244
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.12 E-value=0.02 Score=57.00 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=27.0
Q ss_pred hHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 162 TFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 162 ~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+-...+..+. ..+++.|.|++|+||||++..+....
T Consensus 193 ~Q~~Av~~~~--~~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 193 EQASVLDQLA--GHRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp HHHHHHHHHT--TCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3344444443 24789999999999999999998876
No 245
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.12 E-value=0.027 Score=48.94 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....|.|.|++|+||||+++.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999998
No 246
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.10 E-value=0.011 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 247
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.10 E-value=0.013 Score=50.78 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|.|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998876
No 248
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.08 E-value=0.013 Score=50.31 Aligned_cols=23 Identities=35% Similarity=0.274 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|.|.|++|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 249
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.08 E-value=0.013 Score=50.49 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..|.|.|++|+||||+++.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999886
No 250
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.05 E-value=0.012 Score=52.09 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999876
No 251
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.05 E-value=0.0076 Score=49.96 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++++|+|+.|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998876
No 252
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.05 E-value=0.015 Score=50.72 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|.|.|++|+||||+|+.+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999887
No 253
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.00 E-value=0.015 Score=52.95 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999998876
No 254
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.97 E-value=0.015 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999876
No 255
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.96 E-value=0.034 Score=53.74 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=28.6
Q ss_pred hhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 161 STFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 161 ~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+..+...+.+++ +.+.|.|++|+||||++..+....
T Consensus 32 ~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 32 NAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34444444555433 489999999999999999998887
No 256
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.96 E-value=0.017 Score=52.53 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998765
No 257
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.95 E-value=0.042 Score=60.95 Aligned_cols=82 Identities=17% Similarity=0.115 Sum_probs=61.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhCcc-------cCCCHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIGWL-------QNRSFEEKASGI 246 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-------~~~~~~~~~~~l 246 (397)
.-++|-|+|+.|+||||||.++.... +..=...+|+...+..++.- ++.++.. .+...++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 34799999999999999999998766 34456788998887776553 6666654 455557777777
Q ss_pred HHHhcC-CcEEEEEecCC
Q 041476 247 FNLLSK-MKFLLLLDDIW 263 (397)
Q Consensus 247 ~~~L~~-kr~LlVlDdv~ 263 (397)
...++. ..-+||+|-|-
T Consensus 1502 ~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHcCCCCEEEEccHH
Confidence 777764 55699999883
No 258
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.94 E-value=0.011 Score=50.78 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
.+++|+|+.|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998764
No 259
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.93 E-value=0.015 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.652 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQIN 196 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~ 196 (397)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 260
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.93 E-value=0.035 Score=50.14 Aligned_cols=40 Identities=18% Similarity=0.105 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVS 215 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 215 (397)
.-.++.|.|++|+|||||++.++...... .-..++|+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCc
Confidence 44699999999999999999998876211 11145666543
No 261
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.91 E-value=0.013 Score=51.30 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997764
No 262
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.89 E-value=0.013 Score=52.18 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987654
No 263
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.88 E-value=0.026 Score=53.91 Aligned_cols=97 Identities=13% Similarity=0.145 Sum_probs=57.8
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCC--------CCCC-eEEEEEeCCcC-CHHHHHHHHHHhh--C
Q 041476 166 VWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTP--------NYFD-IVIWVVVSKDM-QLERIQQKIGERI--G 232 (397)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~--------~~f~-~~~wv~vs~~~-~~~~i~~~i~~~l--~ 232 (397)
.++.|.. ..-.-++|.|.+|+|||+|+.++.+.. ... ++-+ .++++-+.+.. ...++.+++...- .
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~ 215 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS 215 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc
Confidence 3444433 234567899999999999999998886 221 1222 56677776553 5666777665531 1
Q ss_pred cc-------cCCCHHHH-----HHHHHHHhc---CCcEEEEEecCC
Q 041476 233 WL-------QNRSFEEK-----ASGIFNLLS---KMKFLLLLDDIW 263 (397)
Q Consensus 233 ~~-------~~~~~~~~-----~~~l~~~L~---~kr~LlVlDdv~ 263 (397)
.. ........ .-.+.++++ ++..||++||+-
T Consensus 216 rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 216 RSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp GEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11 11122211 123455553 689999999984
No 264
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.87 E-value=0.016 Score=53.05 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999876
No 265
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.87 E-value=0.013 Score=52.51 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999987644
No 266
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.85 E-value=0.017 Score=53.06 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..++|.|+|+.|+|||||+..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998876
No 267
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.82 E-value=0.016 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
.-.+++|+|+.|+|||||++.+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 268
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.82 E-value=0.014 Score=51.19 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999997654
No 269
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.79 E-value=0.014 Score=51.72 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999987654
No 270
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.78 E-value=0.062 Score=51.55 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=58.5
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCC-CCCeEEEEEeCCcC-CHHHHHHHHHHhhCcc-------c
Q 041476 166 VWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPN-YFDIVIWVVVSKDM-QLERIQQKIGERIGWL-------Q 235 (397)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~ 235 (397)
.++.|.. ..-.-++|.|.+|+|||+|+.++++.....+. .-+.++++-+++.. ...++++++...-... +
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 3454443 23456778999999999999999988721111 11466777776554 5667777776542111 1
Q ss_pred -CCCHH------HHHHHHHHHhc---CCcEEEEEecC
Q 041476 236 -NRSFE------EKASGIFNLLS---KMKFLLLLDDI 262 (397)
Q Consensus 236 -~~~~~------~~~~~l~~~L~---~kr~LlVlDdv 262 (397)
+.... ...-.+.++++ ++..||++||+
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11111 11223445554 68999999997
No 271
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.77 E-value=0.076 Score=51.78 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=42.9
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHHH
Q 041476 165 KVWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKIG 228 (397)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i~ 228 (397)
+.++.|.. .+-.-++|.|..|+|||+|++++.+.. +-+.++++-+++.. ...++++++-
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~~ 276 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEFP 276 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHTT
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHHH
Confidence 45566543 345688999999999999999998764 23578888888765 4556666653
No 272
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.77 E-value=0.018 Score=52.65 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=29.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVS 215 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 215 (397)
++.+||+|.|=|||||||.+-.+.--.. ..-..+.-|.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA---~~GkkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS---ILGKRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH---HCCCeEEEEecC
Confidence 4679999999999999999988887762 112235555554
No 273
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.76 E-value=0.015 Score=51.96 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999997654
No 274
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.76 E-value=0.036 Score=51.68 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=28.5
Q ss_pred HHHHHHHHh--cCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 163 FDKVWRCLV--EGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 163 ~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+...+. ..+..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344454444 3467899999999999999999988765
No 275
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.76 E-value=0.013 Score=50.44 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997654
No 276
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.74 E-value=0.015 Score=50.56 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 277
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.73 E-value=0.015 Score=51.75 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44689999999999999999987654
No 278
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.72 E-value=0.018 Score=52.10 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 279
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.72 E-value=0.017 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
.-.+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999874
No 280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.72 E-value=0.016 Score=50.94 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987643
No 281
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.71 E-value=0.025 Score=54.62 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhhhccCCCCCC-eEEEEEeCCcC-CHHHHHHHHHHhhCcc-------cCCC-----
Q 041476 174 QFGIIGLYGMGGVGKTTLL-AQINNKFLHTPNYFD-IVIWVVVSKDM-QLERIQQKIGERIGWL-------QNRS----- 238 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa-~~v~~~~~~~~~~f~-~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~----- 238 (397)
.-.-++|.|.+|+|||+|| ..+.+.. . .+ .++++-+++.. ...++.+++...-... +..+
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~-~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ----G-QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC----T-TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh----c-CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 3456789999999999996 5666654 2 34 45777777664 4556666655431111 1111
Q ss_pred --HHHHHHHHHHHh--cCCcEEEEEecCC
Q 041476 239 --FEEKASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 239 --~~~~~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
.....-.+.+++ +++..||++||+-
T Consensus 237 ~~a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 111122233333 4789999999973
No 282
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.71 E-value=0.016 Score=51.16 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 283
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.68 E-value=0.019 Score=48.21 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.++|+|+.|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998764
No 284
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.65 E-value=0.021 Score=53.20 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34799999999999999999998876
No 285
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.64 E-value=0.016 Score=51.31 Aligned_cols=26 Identities=42% Similarity=0.529 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997654
No 286
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.64 E-value=0.021 Score=51.82 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|.|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998875
No 287
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.64 E-value=0.036 Score=48.09 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|.|.|+.|+||||+++.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999887
No 288
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.63 E-value=0.08 Score=51.20 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=58.5
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHH-HHHHhhhcc---CCCCCC-eEEEEEeCCcC-CHHHHHHHHHHhhCcc---
Q 041476 165 KVWRCLVE-GQFGIIGLYGMGGVGKTTLL-AQINNKFLH---TPNYFD-IVIWVVVSKDM-QLERIQQKIGERIGWL--- 234 (397)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~~GvGKTtLa-~~v~~~~~~---~~~~f~-~~~wv~vs~~~-~~~~i~~~i~~~l~~~--- 234 (397)
+.++.|.. ..-.-++|.|.+|+|||+|| ..+.+.... ..++-+ .++++-+++.. ...++.+++...-...
T Consensus 151 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 34555544 34467889999999999995 566666510 012344 47778887664 5667777776532221
Q ss_pred ----cC-CCHH-HH-----HHHHHHHh--cCCcEEEEEecCC
Q 041476 235 ----QN-RSFE-EK-----ASGIFNLL--SKMKFLLLLDDIW 263 (397)
Q Consensus 235 ----~~-~~~~-~~-----~~~l~~~L--~~kr~LlVlDdv~ 263 (397)
+. .... .. .-.+.+++ +++..||++||+-
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 11 1111 11 11233444 4789999999984
No 289
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.63 E-value=0.052 Score=47.41 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=33.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
...|.|.|+.|+||||+++.+.+... ...+..+....-.....+.+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 46899999999999999999999873 23455344444333323334444444
No 290
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.62 E-value=0.021 Score=50.82 Aligned_cols=110 Identities=13% Similarity=0.124 Sum_probs=58.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-cCCHHHHHHHHHH--hhCcccCCCHHHHHHHHHHH
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSK-DMQLERIQQKIGE--RIGWLQNRSFEEKASGIFNL 249 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~i~~~i~~--~l~~~~~~~~~~~~~~l~~~ 249 (397)
..-.+++|+|+.|+|||||++.+..... ..+...+++.-.. .+-.... ..+.. .++. +...+...+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl----~~~~l~~~la~a 94 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE----DTKSFADALRAA 94 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT----TBSCHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC----CHHHHHHHHHHH
Confidence 4457999999999999999999887651 1112233222110 0000000 00000 0000 112234556677
Q ss_pred hcCCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhh
Q 041476 250 LSKMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDV 294 (397)
Q Consensus 250 L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v 294 (397)
|..++=+|++|+.-+......+... ...|.-|++||.....
T Consensus 95 L~~~p~illlDEp~D~~~~~~~l~~----~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 95 LREDPDVIFVGEMRDLETVETALRA----AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHCCSEEEESCCCSHHHHHHHHHH----HHTTCEEEEEECCSSH
T ss_pred HhhCCCEEEeCCCCCHHHHHHHHHH----HccCCEEEEEeCcchH
Confidence 7667789999999754433332211 1235668888877654
No 291
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.61 E-value=0.063 Score=46.06 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|.|.|+.|+||||+++.+.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999999987
No 292
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.60 E-value=0.011 Score=53.65 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+..+|+|.|+.|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 293
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.60 E-value=0.16 Score=49.79 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=42.1
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCc-CCHHHHHHHH
Q 041476 165 KVWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKD-MQLERIQQKI 227 (397)
Q Consensus 165 ~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~i~~~i 227 (397)
+.++.|.. .+-.-++|.|..|+|||+|+.++.+.. +-+.++++-+.+. ....++++++
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 35566654 345789999999999999999998874 2357888888766 3455666554
No 294
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.59 E-value=0.017 Score=51.67 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997654
No 295
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.58 E-value=0.011 Score=59.21 Aligned_cols=45 Identities=22% Similarity=0.159 Sum_probs=31.3
Q ss_pred ccccchhhHHHHHHHHhcCCce-----------EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 155 TIVGLESTFDKVWRCLVEGQFG-----------IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|.+..+..+.-.+..+..+ -+.++|++|+|||+||+.+++..
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 4567666555554444333211 58899999999999999998775
No 296
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.58 E-value=0.017 Score=51.29 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44689999999999999999997654
No 297
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.56 E-value=0.018 Score=50.86 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999987654
No 298
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.53 E-value=0.02 Score=48.27 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-.++|+|+.|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998763
No 299
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.51 E-value=0.021 Score=54.52 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998765
No 300
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.50 E-value=0.018 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987654
No 301
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.49 E-value=0.025 Score=45.44 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+-|.|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998764
No 302
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.49 E-value=0.072 Score=50.69 Aligned_cols=29 Identities=31% Similarity=0.373 Sum_probs=24.9
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 171 VEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 171 ~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....-.+++|+|+.|+|||||.+.+....
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34556799999999999999999998876
No 303
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.48 E-value=0.019 Score=51.65 Aligned_cols=26 Identities=42% Similarity=0.478 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999997654
No 304
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.48 E-value=0.019 Score=50.87 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 305
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.46 E-value=0.017 Score=48.02 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998774
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.44 E-value=0.022 Score=51.79 Aligned_cols=27 Identities=15% Similarity=0.205 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345799999999999999999988654
No 307
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.41 E-value=0.023 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 308
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.41 E-value=0.023 Score=47.95 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-+.|.|.|+.|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998765
No 309
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.39 E-value=0.023 Score=50.85 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|+|+.|+|||||.+.++.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 310
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.38 E-value=0.022 Score=51.08 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.++.|+|++|+|||||+..+....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999988755
No 311
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.37 E-value=0.063 Score=46.05 Aligned_cols=52 Identities=17% Similarity=0.122 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~ 229 (397)
..|.|.|+.|+||||+++.+.+... . ..+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~-~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE-Q-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-H-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-H-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999999872 2 23323343333333334555666654
No 312
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.33 E-value=0.028 Score=49.16 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|.|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999886
No 313
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.29 E-value=0.03 Score=49.48 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35788999999999999999998776
No 314
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.26 E-value=0.025 Score=45.46 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998664
No 315
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.24 E-value=0.031 Score=51.29 Aligned_cols=26 Identities=42% Similarity=0.681 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...++.|+|++|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998877
No 316
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.20 E-value=0.11 Score=50.05 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVS 215 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 215 (397)
.-.++.|.|.+|+||||+|.+++.+... . -..++|++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~-~--g~~vl~fSlE 234 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD-N--DDVVNLHSLE 234 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH-T--TCEEEEECSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH-c--CCEEEEEECC
Confidence 3468999999999999999999888732 2 2357777654
No 317
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.20 E-value=0.031 Score=48.69 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 318
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.16 E-value=0.028 Score=45.51 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998764
No 319
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.15 E-value=0.025 Score=50.39 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
-.+++|+|+.|+|||||.+.+..-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999754
No 320
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.14 E-value=0.026 Score=52.47 Aligned_cols=26 Identities=35% Similarity=0.333 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 321
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.13 E-value=0.08 Score=45.09 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..|+|-|+.|+||||+++.+.+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999988
No 322
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.12 E-value=0.022 Score=49.47 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3469999999999999999998765
No 323
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.08 E-value=0.033 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
..|+|+|.+|+|||||.+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 324
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.08 E-value=0.092 Score=48.40 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=25.0
Q ss_pred HhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 170 LVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 170 L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.+...+++.+.|-||+||||+|..++...
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~l 40 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQL 40 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHH
Confidence 334456888899999999999999998877
No 325
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.07 E-value=0.059 Score=44.71 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 164 DKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 164 ~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
..+.+ +...+.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33455567889999999999999999854
No 326
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.07 E-value=0.033 Score=52.27 Aligned_cols=27 Identities=26% Similarity=0.064 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 355699999999999999999999765
No 327
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.05 E-value=0.066 Score=46.27 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.....|.|.|+.|+||||+++.+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999887
No 328
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.96 E-value=0.075 Score=49.27 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=24.5
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 171 VEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 171 ~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.....+++.+.|-||+||||+|..++...
T Consensus 14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 34566899999999999999998887766
No 329
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.96 E-value=0.029 Score=45.83 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||.+.+....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 458899999999999999987654
No 330
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.95 E-value=0.035 Score=52.26 Aligned_cols=24 Identities=42% Similarity=0.649 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+|.|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 588999999999999999998876
No 331
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.91 E-value=0.033 Score=44.91 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 357899999999999999998664
No 332
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.89 E-value=0.032 Score=51.87 Aligned_cols=26 Identities=38% Similarity=0.508 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 333
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.89 E-value=0.029 Score=50.67 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999997664
No 334
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.87 E-value=0.069 Score=47.33 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=27.0
Q ss_pred HHHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 165 KVWRCLVEG--QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 165 ~l~~~L~~~--~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-+..|+... +...+.++|++|+|||.+|..+++..
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 355555543 24579999999999999999999864
No 335
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.85 E-value=0.034 Score=46.27 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998764
No 336
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.85 E-value=0.04 Score=45.92 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....|.|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998764
No 337
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.84 E-value=0.039 Score=45.78 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++.+|+|+.|+|||||+..++--.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999987654
No 338
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.84 E-value=0.063 Score=48.74 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=29.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVS 215 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 215 (397)
...++|+|+|-||+||||+|..++....+ . -..++-|...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~-~--G~~VlliD~D 78 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-L--GKRVLQIGCD 78 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEEES
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH-C--CCeEEEEeCC
Confidence 46789999999999999999998887732 1 2245556554
No 339
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.83 E-value=0.033 Score=51.88 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 44689999999999999999987654
No 340
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.83 E-value=0.048 Score=51.75 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
...+++|+|+.|+|||||.+.+..-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 5579999999999999999999873
No 341
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.82 E-value=0.023 Score=50.41 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+...|.|.|+.|+||||+++.+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998876
No 342
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.81 E-value=3.3 Score=38.11 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....++|+|.+|+|||||...+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999987654
No 343
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.80 E-value=0.036 Score=44.68 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-|.|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999987654
No 344
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.79 E-value=0.036 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-|.|+|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988664
No 345
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.78 E-value=0.04 Score=46.11 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++.|+|+.|+||||++..+..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999997776655
No 346
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.78 E-value=0.036 Score=44.97 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999988664
No 347
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.78 E-value=0.034 Score=52.13 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34689999999999999999998654
No 348
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.77 E-value=0.034 Score=45.70 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..|+|+|.+|+|||||.+.+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998753
No 349
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.76 E-value=0.023 Score=51.76 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45689999999999999999987654
No 350
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.75 E-value=0.03 Score=51.36 Aligned_cols=25 Identities=44% Similarity=0.553 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
..+++.|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4679999999999999999999865
No 351
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.75 E-value=0.035 Score=51.71 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34689999999999999999998654
No 352
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.74 E-value=0.057 Score=52.68 Aligned_cols=43 Identities=14% Similarity=-0.055 Sum_probs=31.3
Q ss_pred ccchhhHHHHHHHH--hcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 157 VGLESTFDKVWRCL--VEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 157 vGr~~~~~~l~~~L--~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+.|.+..+.+.+.. ...+..+|.+.|++|+||||+|+.+....
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 44444444444444 12355789999999999999999999998
No 353
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.74 E-value=0.037 Score=44.68 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-|.|+|.+|+|||||.+.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 354
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.74 E-value=0.037 Score=44.84 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-|.|+|.+|+|||||.+.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999988764
No 355
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.73 E-value=0.047 Score=44.69 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+...|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678899999999999999987653
No 356
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.72 E-value=0.039 Score=44.51 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|.|+|.+|+|||||...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999987653
No 357
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.70 E-value=0.037 Score=45.90 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||+..+.+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999988764
No 358
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.70 E-value=0.036 Score=51.69 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 359
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.69 E-value=0.037 Score=44.88 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-|.|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 360
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.68 E-value=0.047 Score=46.60 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....|.|+|++|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999998765
No 361
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.66 E-value=0.038 Score=45.31 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...-|.|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34568899999999999999987654
No 362
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.64 E-value=0.037 Score=51.83 Aligned_cols=26 Identities=35% Similarity=0.298 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34689999999999999999998654
No 363
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.64 E-value=0.039 Score=45.92 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||+..+.+..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999998877653
No 364
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.61 E-value=0.038 Score=51.75 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44689999999999999999998643
No 365
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.60 E-value=0.04 Score=45.07 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999998654
No 366
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.58 E-value=0.043 Score=45.45 Aligned_cols=25 Identities=44% Similarity=0.486 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
...-|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4457889999999999999998765
No 367
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.58 E-value=0.04 Score=44.61 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 357899999999999999988654
No 368
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.58 E-value=0.04 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+|.|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998765
No 369
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.57 E-value=0.043 Score=44.91 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 357899999999999999987653
No 370
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.57 E-value=0.041 Score=45.32 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
.+..-|.|+|.+|+|||||...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 44567889999999999999888743
No 371
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.55 E-value=0.038 Score=44.80 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
-|.|+|.+|+|||||...+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999998643
No 372
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=93.55 E-value=0.049 Score=53.07 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=40.2
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC-CHHHHHHHH
Q 041476 166 VWRCLVE-GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM-QLERIQQKI 227 (397)
Q Consensus 166 l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~i~~~i 227 (397)
.++.|.. .+-.-++|.|..|+|||+|+.++.+.. +-+.++++-+++.. ...++++++
T Consensus 211 vID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 269 (578)
T 3gqb_A 211 ILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWS-----NADVVVYVGSGERGNEMTDVLVEF 269 (578)
T ss_dssp HHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHTTG
T ss_pred hhhhcccccCCCEEeeeCCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4455443 345688999999999999999998874 23578888887663 445555554
No 373
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.55 E-value=0.038 Score=44.67 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988654
No 374
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.55 E-value=0.042 Score=45.78 Aligned_cols=24 Identities=46% Similarity=0.364 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 357899999999999998776654
No 375
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.53 E-value=0.041 Score=45.10 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..-|.|+|.+|+|||||...+.+..
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568899999999999999988763
No 376
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.50 E-value=0.052 Score=45.71 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
+..-|.|+|.+|+|||||.+.+...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998754
No 377
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.50 E-value=0.046 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
+...|.|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998765
No 378
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.47 E-value=0.063 Score=48.76 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 163 FDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++++.+.+. -.+++|+|++|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 566666654 3688999999999999999998 54
No 379
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.45 E-value=0.043 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||+..+.+..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 467899999999999998887654
No 380
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.44 E-value=0.045 Score=44.26 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-|.|+|.+|+|||||...+....
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999988653
No 381
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.41 E-value=0.044 Score=45.82 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|.|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999988753
No 382
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.40 E-value=0.046 Score=44.35 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-|.|+|.+|+|||||...+....
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999997654
No 383
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.38 E-value=0.032 Score=51.76 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34689999999999999999998654
No 384
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.37 E-value=0.046 Score=44.67 Aligned_cols=25 Identities=36% Similarity=0.317 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.--|.|+|.+|+|||||...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998764
No 385
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.36 E-value=0.04 Score=45.65 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-|.|+|.+|+|||||...+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999988754
No 386
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.36 E-value=0.046 Score=45.21 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-|.|+|.+|+|||||...+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998764
No 387
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.35 E-value=0.032 Score=53.44 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+..+|.|+|++|+||||++..+....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999988776
No 388
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.33 E-value=0.046 Score=45.14 Aligned_cols=24 Identities=33% Similarity=0.301 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999988764
No 389
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.32 E-value=0.048 Score=47.30 Aligned_cols=24 Identities=38% Similarity=0.401 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-++|.|++|+||||+|+.+.+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 390
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.31 E-value=0.049 Score=47.01 Aligned_cols=23 Identities=30% Similarity=0.213 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.|.+.|.||+||||++..+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47789999999999999888887
No 391
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.30 E-value=0.048 Score=44.95 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 467899999999999999988664
No 392
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.28 E-value=0.045 Score=51.20 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...++|+|+.|+|||||++.+..-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998775
No 393
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.28 E-value=0.053 Score=50.37 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+..+|+|+|++|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998754
No 394
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.27 E-value=0.048 Score=44.57 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999988653
No 395
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.24 E-value=0.056 Score=45.71 Aligned_cols=27 Identities=37% Similarity=0.357 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+.--|.|+|.+|+|||||...+.+..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 344567899999999999998888654
No 396
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.23 E-value=0.054 Score=45.01 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|.|+|.+|+|||||...+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 3578899999999999999998764
No 397
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.23 E-value=0.057 Score=45.83 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+|.|.|+.|+||||+++.+++..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999986
No 398
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.22 E-value=0.05 Score=45.13 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||+..+....
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999998754
No 399
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.21 E-value=0.058 Score=49.86 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+..+++|+|++|+|||||.+.+....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998654
No 400
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.19 E-value=0.062 Score=50.39 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=59.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC-CCeEEEEEeCCcCCHHHHHHHHHHhhCcc-c---CCCHHHHHHHHH
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNY-FDIVIWVVVSKDMQLERIQQKIGERIGWL-Q---NRSFEEKASGIF 247 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~-f~~~~wv~vs~~~~~~~i~~~i~~~l~~~-~---~~~~~~~~~~l~ 247 (397)
....+++|+|+.|+|||||++.+..... .. -..++++...-.+... .....- + ..+.......+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~---~~~~g~I~~~e~~~e~~~~-------~~~~~v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPIEYVFK-------HKKSIVNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH---HHSCCEEEEEESSCCSCCC-------CSSSEEEEEEBTTTBSCSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC---cCCCcEEEEecccHhhhhc-------cCceEEEeeecCCCHHHHHHHHH
Confidence 3457899999999999999999887651 11 1122233211100000 000000 0 001122345677
Q ss_pred HHhcCCcEEEEEecCCCchhhhhcCCCCCCCCCCCcEEEEEcCChhh
Q 041476 248 NLLSKMKFLLLLDDIWERIDLAKMGVPFPASSRNASKIVFTTRLVDV 294 (397)
Q Consensus 248 ~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~~gs~IlvTtR~~~v 294 (397)
..|...+=+|++|++.+.......... ...|..|+.|+....+
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~----~~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRA----AETGHLVFGTLHTNTA 246 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHH----HTTTCEEEECCCCCSH
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHH----HhcCCEEEEEECcchH
Confidence 777777889999999765544332222 1335668888876554
No 401
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.19 E-value=0.048 Score=51.39 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4468999999999999999999753
No 402
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.18 E-value=0.051 Score=44.76 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-|.|+|.+|+|||||+..+....
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468899999999999999998654
No 403
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.17 E-value=0.051 Score=44.75 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-|.|+|.+|+|||||...+.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999987653
No 404
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.16 E-value=0.051 Score=45.30 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999988754
No 405
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.14 E-value=0.039 Score=45.20 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.--|.|+|.+|+|||||+..+....
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999987653
No 406
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.14 E-value=0.053 Score=45.47 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
--|.|+|.+|+|||||...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998753
No 407
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.13 E-value=0.038 Score=45.37 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-|.|+|.+|+|||||...+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999988753
No 408
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.12 E-value=0.052 Score=44.63 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-|.|+|.+|+|||||...+.+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999988553
No 409
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.11 E-value=0.053 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999988664
No 410
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.11 E-value=0.053 Score=44.52 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999987653
No 411
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.07 E-value=0.03 Score=52.07 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998643
No 412
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.07 E-value=0.053 Score=45.58 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..-|.|+|.+|+|||||...+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468899999999999999987654
No 413
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.05 E-value=0.044 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
-|+|+|++|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3589999999999999997753
No 414
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.04 E-value=0.056 Score=44.32 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 467899999999999999988764
No 415
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.98 E-value=0.036 Score=57.54 Aligned_cols=46 Identities=28% Similarity=0.271 Sum_probs=36.3
Q ss_pred CccccchhhHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 154 PTIVGLESTFDKVWRCLVE-------------GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+++|.+..++.|.+.+.- .....+.++|++|+|||+||+.+++..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 3567888888888776542 134568899999999999999999987
No 416
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.98 E-value=0.057 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 467899999999999999988764
No 417
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.96 E-value=0.28 Score=57.06 Aligned_cols=65 Identities=25% Similarity=0.193 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHHhhC--------------cccCCCHHH
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGERIG--------------WLQNRSFEE 241 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~~l~--------------~~~~~~~~~ 241 (397)
+-+.++|++|+|||++|+.+.... .+ -..+.++.+...+...+...+...+. .
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~--~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~-------- 1334 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SL--YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD-------- 1334 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SS--CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS--------
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CC--CceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC--------
Q ss_pred HHHHHHHHhcCCcEEEEEecCC
Q 041476 242 KASGIFNLLSKMKFLLLLDDIW 263 (397)
Q Consensus 242 ~~~~l~~~L~~kr~LlVlDdv~ 263 (397)
+|+++|.+||+.
T Consensus 1335 ----------gk~~VlFiDEin 1346 (2695)
T 4akg_A 1335 ----------IKNLVLFCDEIN 1346 (2695)
T ss_dssp ----------SSCEEEEEETTT
T ss_pred ----------CceEEEEecccc
No 418
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.96 E-value=0.056 Score=45.53 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.--|.|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999987764
No 419
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.95 E-value=0.032 Score=47.35 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
....++|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4467999999999999999887654
No 420
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.94 E-value=0.057 Score=50.07 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..-.+++|+|+.|+|||||.+.+....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355799999999999999999999986
No 421
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.94 E-value=0.044 Score=46.09 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINN 197 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~ 197 (397)
.--|.|+|.+|+|||||.+.+..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 35788999999999999999853
No 422
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.94 E-value=0.051 Score=45.58 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3467899999999999999777653
No 423
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.92 E-value=0.057 Score=45.85 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.--|.|+|.+|+|||||+..+....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998764
No 424
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.91 E-value=0.067 Score=52.54 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.++|++|+||||+|+.+....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998776
No 425
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.89 E-value=0.073 Score=44.52 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..--|.|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34568899999999999999988764
No 426
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.89 E-value=0.058 Score=45.05 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998664
No 427
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.88 E-value=0.059 Score=45.04 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.--|.|+|.+|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3458899999999999999998764
No 428
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.86 E-value=0.075 Score=52.45 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
+..++.|+|+.|+|||||++.+....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 44689999999999999999999887
No 429
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.85 E-value=0.061 Score=44.73 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999998654
No 430
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.85 E-value=0.061 Score=44.70 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999988764
No 431
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.85 E-value=0.059 Score=45.60 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.--|.|+|.+|+|||||+..+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468899999999999999987654
No 432
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.82 E-value=0.065 Score=44.09 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
.-+.|.|++|+||||||..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56889999999999999998775
No 433
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.82 E-value=0.062 Score=44.88 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 467899999999999999998764
No 434
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.82 E-value=0.061 Score=45.72 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|.|+|.+|+|||||...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999988654
No 435
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.81 E-value=0.092 Score=47.64 Aligned_cols=34 Identities=32% Similarity=0.478 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 163 FDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
++++...+. -.+++|+|++|+|||||.+.+....
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhcccc
Confidence 566666654 3588999999999999999998764
No 436
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.81 E-value=0.06 Score=45.30 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...-|.|+|.+|+|||||+..+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34568899999999999999998764
No 437
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.81 E-value=0.059 Score=45.34 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||+..+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999988764
No 438
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.78 E-value=0.063 Score=44.74 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 357899999999999999988654
No 439
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.77 E-value=0.063 Score=44.72 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 440
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.74 E-value=0.064 Score=48.71 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|+|+|.+|+|||||...+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4689999999999999999998753
No 441
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.72 E-value=0.052 Score=50.67 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||++.+....
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34689999999999999999998876
No 442
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.70 E-value=0.13 Score=45.46 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVS 215 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 215 (397)
++|+|.|-||+||||+|..++.... .. -..++-|...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la-~~--G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH-AM--GKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH-TT--TCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH-HC--CCcEEEEcCC
Confidence 5788899999999999999998872 22 2245556543
No 443
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.65 E-value=0.2 Score=43.02 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|.|.|+.|+||||+++.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3688999999999999999999998
No 444
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.65 E-value=0.067 Score=44.44 Aligned_cols=25 Identities=28% Similarity=0.142 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.--|.|+|.+|+|||||...+....
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999987654
No 445
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.64 E-value=0.072 Score=44.02 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+.--|.|+|.+|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999988654
No 446
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.63 E-value=0.068 Score=44.44 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 447
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.59 E-value=0.068 Score=44.89 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..--|.|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 44678899999999999999987654
No 448
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.57 E-value=0.068 Score=44.64 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.--|.|+|.+|+|||||...+....
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCC
Confidence 3468899999999999999998753
No 449
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.57 E-value=0.067 Score=49.68 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+++|+|++|+|||||++.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 589999999999999999998765
No 450
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.57 E-value=0.063 Score=45.05 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.--|.|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3467899999999999999887653
No 451
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.55 E-value=0.068 Score=45.11 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999988654
No 452
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.52 E-value=0.064 Score=45.19 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.--|.|+|.+|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC--
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3467899999999999999987553
No 453
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.47 E-value=0.078 Score=46.18 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=32.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIG 228 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~ 228 (397)
.-.++.|.|.+|+|||++|.+++.+.. ...-..+++++... +..++.+.+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~--~~~~~~v~~~s~E~--~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA--EEYGEPGVFVTLEE--RARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH--HHHCCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--HhcCCCceeecccC--CHHHHHHHHH
Confidence 346899999999999999988765421 12223456665543 3455555443
No 454
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.46 E-value=0.064 Score=44.23 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999998653
No 455
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.44 E-value=0.062 Score=51.86 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44689999999999999999987754
No 456
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.43 E-value=0.083 Score=48.88 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+..+++|+|.+|+|||||+..+....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 466899999999999999999987654
No 457
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.42 E-value=0.085 Score=45.47 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....|.|+|.+|+|||||+..+....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999987653
No 458
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.39 E-value=0.075 Score=45.67 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 041476 177 IIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 177 vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
-|.|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3678999999999999988765
No 459
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.38 E-value=0.17 Score=51.21 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 041476 163 FDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 163 ~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~ 229 (397)
.+.+...|.. ..+..|+||+|.|||+.+-++....... +..+.++...+..++.++..+..
T Consensus 195 ~~AV~~al~~--~~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 195 KEAVLFALSQ--KELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHC--SSEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHHh
Confidence 3444445543 2477899999999996554444433121 23677887777778888777754
No 460
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.37 E-value=0.071 Score=46.42 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 44678999999999999999998764
No 461
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.36 E-value=0.073 Score=45.54 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINN 197 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~ 197 (397)
--|.|+|.+|+|||||...+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999999874
No 462
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.30 E-value=0.077 Score=44.24 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||+..+.+..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999998764
No 463
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.28 E-value=0.087 Score=51.04 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.++|++|+||||+++.+....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999998875
No 464
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.27 E-value=0.088 Score=46.85 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|+|+|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999987653
No 465
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.26 E-value=0.066 Score=50.93 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~ 198 (397)
++|+|+.|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999765
No 466
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.25 E-value=0.077 Score=44.88 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.-|.|+|.+|+|||||...+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999988754
No 467
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.25 E-value=0.071 Score=45.47 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
--|.|+|.+|+|||||...+.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998764
No 468
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.25 E-value=0.15 Score=44.30 Aligned_cols=39 Identities=31% Similarity=0.338 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCC
Q 041476 178 IGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQ 219 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 219 (397)
|+|.|-||+||||+|..+..... ..+ ..++-|......+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la-~~g--~~VlliD~D~~~~ 41 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA-SDY--DKIYAVDGDPDSC 41 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT-TTC--SCEEEEEECTTSC
T ss_pred EEEecCCCCCHHHHHHHHHHHHH-HCC--CeEEEEeCCCCcC
Confidence 56699999999999999999882 222 4566666554343
No 469
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.24 E-value=0.064 Score=44.87 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
+.--|.|+|.+|+|||||...+...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 4456889999999999999998654
No 470
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.24 E-value=0.079 Score=44.81 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..-|.|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3568899999999999999988654
No 471
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.21 E-value=0.09 Score=47.23 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++|+|.|-||+||||+|..++...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~L 26 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAAL 26 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHH
Confidence 4688889999999999999998887
No 472
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.20 E-value=0.079 Score=44.89 Aligned_cols=24 Identities=29% Similarity=0.200 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||+..+.+..
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999988654
No 473
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.20 E-value=0.08 Score=44.64 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.--|.|+|.+|+|||||+..+....
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 3568899999999999999987654
No 474
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.19 E-value=0.063 Score=44.86 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|..|+|||||...+....
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999987653
No 475
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.18 E-value=0.12 Score=51.98 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=43.6
Q ss_pred cchhhHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 041476 158 GLESTFDKVWRCLVEGQFGIIGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLERIQQKIGE 229 (397)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~i~~~i~~ 229 (397)
+.+..-...+..... .++..|+|++|.|||+++..+..... ..-...+.++.........+...+..
T Consensus 180 ~ln~~Q~~av~~~l~--~~~~li~GppGTGKT~~~~~~i~~l~---~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQ--RPLSLIQGPPGTGKTVTSATIVYHLA---RQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHHT--CSEEEEECCTTSCHHHHHHHHHHHHH---TSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc--CCCeEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 334444444443332 35788999999999998887776652 11345677777777677777777654
No 476
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.18 E-value=0.072 Score=44.47 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...-|.|+|.+|+|||||...+....
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999987654
No 477
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.13 E-value=0.093 Score=52.47 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.|.|++|+||||+|+.+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998876
No 478
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.10 E-value=0.079 Score=48.22 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..+.|+|+|.+|+|||||...+....
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45789999999999999999988754
No 479
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.10 E-value=0.084 Score=44.42 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999988754
No 480
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.10 E-value=0.083 Score=50.64 Aligned_cols=27 Identities=33% Similarity=0.520 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
..-..++|+|+.|+|||||++.+....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 355799999999999999999999886
No 481
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.03 E-value=0.087 Score=44.94 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+.+..
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 457899999999999999987764
No 482
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.03 E-value=0.05 Score=44.83 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=9.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNK 198 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~ 198 (397)
--|.|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999888755
No 483
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.01 E-value=0.12 Score=44.70 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.|.|+.|+||||+++.+.+..
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 34699999999999999999999876
No 484
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.00 E-value=0.12 Score=41.56 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.++..|+|+.|.||||+...++--.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999998887543
No 485
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.94 E-value=0.1 Score=51.77 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.|.|++|+||||+|+.+....
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998886
No 486
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.94 E-value=0.06 Score=44.76 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.--|.|+|.+|+|||||...+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567899999999999999987664
No 487
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.93 E-value=0.079 Score=44.05 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=24.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcC
Q 041476 178 IGLYGMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDM 218 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 218 (397)
+.|+|.+|+||||+|.++... . ..++++.-+..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~------~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A------PQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C------SSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc-C------CCeEEEecCCCC
Confidence 689999999999999998754 1 235566555443
No 488
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.81 E-value=0.15 Score=42.87 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=29.7
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCcCCHH
Q 041476 176 GIIGLY-GMGGVGKTTLLAQINNKFLHTPNYFDIVIWVVVSKDMQLE 221 (397)
Q Consensus 176 ~vi~I~-G~~GvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 221 (397)
++|+|+ +-||+||||++..++..... .-..++-+......+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~---~g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR---SGYNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH---CCCeEEEEECCCCCCHH
Confidence 578887 67999999999999888731 22346666665444433
No 489
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.77 E-value=0.092 Score=50.78 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
.+++|+|+.|+|||||.+.+..-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 799999999999999999998654
No 490
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.70 E-value=0.09 Score=44.73 Aligned_cols=24 Identities=33% Similarity=0.337 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999987653
No 491
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.65 E-value=0.082 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041476 178 IGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 178 i~I~G~~GvGKTtLa~~v~~~~ 199 (397)
|+|+|++|+|||||++.++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999998754
No 492
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.45 E-value=0.2 Score=49.37 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|.+.|++|+||||+|+.+....
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998876
No 493
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.42 E-value=0.1 Score=51.44 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-.+++|+|+.|+|||||++.+..-.
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998654
No 494
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=91.41 E-value=0.12 Score=46.96 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...|+|+|.+|+|||||...+....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3579999999999999999988764
No 495
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.36 E-value=0.11 Score=44.49 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 176 GIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 176 ~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
--|.|+|.+|+|||||...+....
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999988754
No 496
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.35 E-value=0.096 Score=51.63 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
-.+++|+|+.|+|||||++.++.-.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998764
No 497
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=91.27 E-value=0.33 Score=45.02 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...++...|-||+||||+|..++...
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~l 42 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQM 42 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 34566777999999999998887766
No 498
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=91.27 E-value=0.31 Score=44.73 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 173 GQFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 173 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
....++.+.|-||+||||+|..++...
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~l 43 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQM 43 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 345677788999999999999988776
No 499
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.27 E-value=0.17 Score=42.86 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 041476 174 QFGIIGLYGMGGVGKTTLLAQINNKF 199 (397)
Q Consensus 174 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 199 (397)
...+|+|+|++|+||+|+|..+.+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45799999999999999999987755
No 500
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.27 E-value=0.11 Score=51.26 Aligned_cols=121 Identities=20% Similarity=0.180 Sum_probs=63.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCC--CC-eEEEEEeCC----cCCHHHHHHHH--------------HHhhCc
Q 041476 175 FGIIGLYGMGGVGKTTLLAQINNKFLHTPNY--FD-IVIWVVVSK----DMQLERIQQKI--------------GERIGW 233 (397)
Q Consensus 175 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~~--f~-~~~wv~vs~----~~~~~~i~~~i--------------~~~l~~ 233 (397)
-.+++|+|+.|+|||||++.++.-.....+. +. .+.++.-.. ..++.+.+... ++.++.
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 3589999999999999999998765211111 11 234443211 12344433322 111111
Q ss_pred c-------cCCCH-HHHHHHHHHHhcCCcEEEEEecCCCchh------hhhcCCCCCCCCCCCcEEEEEcCChhhhhh
Q 041476 234 L-------QNRSF-EEKASGIFNLLSKMKFLLLLDDIWERID------LAKMGVPFPASSRNASKIVFTTRLVDVCGL 297 (397)
Q Consensus 234 ~-------~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~~~~------~~~l~~~l~~~~~~gs~IlvTtR~~~v~~~ 297 (397)
. ...+- +...-.|.+.|..++-+|+||+.-+.-+ ...+... +. ...|.-||++|.+...+..
T Consensus 392 ~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~-l~-~~~g~tvi~vsHd~~~~~~ 467 (538)
T 1yqt_A 392 IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH-LM-EKNEKTALVVEHDVLMIDY 467 (538)
T ss_dssp GGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHH-HH-HHHTCEEEEECSCHHHHHH
T ss_pred hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH-HH-HhCCCEEEEEeCCHHHHHH
Confidence 1 11222 2233445667777888999999864211 1121111 11 1124567888887666543
Done!