Your job contains 1 sequence.
>041480
MASLEELLLADGFKGRRSSVTSSRPSFREEAMSMPVYPFGDKNKAASSSSSRIKTERARS
DLSRYTLKSDSPRISNLSGRRPRDSLVRREKVDSGSMKEHRERLAGRRSVDVQERRRSNA
KSSETSQENEIVEVSGEESQRVSINLDTRHSNVDNRKSMKENEPGNDRYNRSSMSRKSIK
ENYRKHESVLAPASEPALDEVAVQAIVSILSGYVKSFLKNEDFRATLRRKCFSSLNFIEP
EDEGNSNESKVIASLEQAIETVQRAAEESASSKELKKASLQLSMITGMSANDLKDGSTSG
VPNSKLSACAHLYLSVIYKIQKKDRVSAKHLLQVFCDSPFMARTTLLPELWDYLISPHLA
HLKAWYKQEADSLADESNKPRKMKLLEKVYNEILDSGTYQFAVYYKDWLTEGIEDPSVPT
IQIPSLSVQRHQRKGSFGNSSEVASPAAAFSPQPTVSKKLYDAVFERASKPRVDAAEDDG
EMENFDNYARSSGGSTVEKRTLTYSSEIVKCTYQDTEDDSPKIAQDDLFHPEDELLLAAE
EGWRLPGVKYPAERNINSNINICCTSKKIQTIKLYTPPDTKANELTLKRLAKSAFEQQQT
EGCTALTISSPPSTSEAPVNLRPSFEELHENDEYFDKGSFLTSIPQDFICPLTGQLFEEP
VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSENCMHLL
AFAFQIVEKSRMNESKNGDETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFES
GKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLIC
LSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIY
REAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEG
NSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRKRSFLETVSKILGSRNSDLV
SVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKI
PECGAVLKTIAAEIRIPLQSLTEVTWTTQELCAIIAGRSLIS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041480
(1122 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q5VRH9 - symbol:PUB12 "U-box domain-containing ... 183 2.7e-10 1
TAIR|locus:2014584 - symbol:PUB43 "plant U-box 43" specie... 174 3.8e-10 2
TAIR|locus:2079706 - symbol:PUB9 "plant U-box 9" species:... 170 9.4e-09 2
TAIR|locus:2030462 - symbol:SAUL1 "senescence-associated ... 167 1.4e-08 2
TAIR|locus:2141226 - symbol:PUB8 "plant U-box 8" species:... 147 2.5e-08 2
TAIR|locus:2017719 - symbol:AT1G23030 species:3702 "Arabi... 162 5.1e-08 1
TAIR|locus:2013990 - symbol:AT1G71020 species:3702 "Arabi... 157 5.1e-08 3
TAIR|locus:2162276 - symbol:PUB15 "Plant U-Box 15" specie... 171 6.5e-08 2
TAIR|locus:2013850 - symbol:CMPG1 ""CYS, MET, PRO, and GL... 150 1.1e-07 2
RGD|1359296 - symbol:Wdsub1 "WD repeat, sterile alpha mot... 157 1.2e-07 1
TAIR|locus:2195563 - symbol:PUB19 "plant U-box 19" specie... 159 1.3e-07 1
TAIR|locus:2082682 - symbol:PUB14 "plant U-box 14" specie... 158 1.4e-07 1
MGI|MGI:1919387 - symbol:Wdsub1 "WD repeat, SAM and U-box... 156 1.5e-07 1
TAIR|locus:2169861 - symbol:AT5G37490 species:3702 "Arabi... 155 1.6e-07 1
UNIPROTKB|F1MRF3 - symbol:WDSUB1 "Uncharacterized protein... 154 2.5e-07 1
UNIPROTKB|G3MZA8 - symbol:WDSUB1 "Uncharacterized protein... 154 2.5e-07 1
TAIR|locus:2181077 - symbol:SAUR21 "SMALL AUXIN UP RNA 21... 163 3.9e-07 2
UNIPROTKB|Q8N9V3 - symbol:WDSUB1 "WD repeat, SAM and U-bo... 151 5.3e-07 1
UNIPROTKB|E2QX39 - symbol:WDSUB1 "Uncharacterized protein... 147 1.4e-06 1
TAIR|locus:2012136 - symbol:PUB26 "plant U-box 26" specie... 146 1.5e-06 1
UNIPROTKB|Q0IMG9 - symbol:SPL11 "E3 ubiquitin-protein lig... 154 1.9e-06 2
TAIR|locus:2198165 - symbol:AT1G01660 species:3702 "Arabi... 140 1.9e-06 2
TAIR|locus:2144846 - symbol:AT5G09800 species:3702 "Arabi... 140 2.2e-06 2
UNIPROTKB|Q5ZMC3 - symbol:WDSUB1 "WD repeat, SAM and U-bo... 144 3.0e-06 1
TAIR|locus:2158252 - symbol:AT5G67340 species:3702 "Arabi... 146 3.4e-06 1
TAIR|locus:2013688 - symbol:PUB17 "plant U-box 17" specie... 156 3.4e-06 2
TAIR|locus:2075140 - symbol:PUB13 "plant U-box 13" specie... 154 6.7e-06 2
TAIR|locus:2174814 - symbol:CMPG2 ""CYS, MET, PRO, and GL... 123 9.9e-06 2
TAIR|locus:2032472 - symbol:AT1G24330 species:3702 "Arabi... 141 1.3e-05 1
TAIR|locus:2090604 - symbol:PUB25 "plant U-box 25" specie... 137 1.4e-05 1
TAIR|locus:2098816 - symbol:AT3G61390 species:3702 "Arabi... 136 1.9e-05 1
TAIR|locus:2194564 - symbol:PUB18 "plant U-box 18" specie... 136 3.7e-05 2
UNIPROTKB|Q6EUK7 - symbol:PUB4 "U-box domain-containing p... 146 3.8e-05 2
ZFIN|ZDB-GENE-061110-97 - symbol:zgc:154085 "zgc:154085" ... 133 4.9e-05 1
TAIR|locus:2102455 - symbol:AT3G54790 species:3702 "Arabi... 145 5.5e-05 2
TAIR|locus:2039265 - symbol:PUB23 "plant U-box 23" specie... 130 7.9e-05 1
UNIPROTKB|Q0DR28 - symbol:PUB57 "U-box domain-containing ... 131 8.9e-05 1
TAIR|locus:2010424 - symbol:PUB45 "plant U-box 45" specie... 140 9.3e-05 2
TAIR|locus:2146198 - symbol:AT5G18330 species:3702 "Arabi... 129 0.00012 1
TAIR|locus:2079964 - symbol:PUB22 "plant U-box 22" specie... 127 0.00018 1
TAIR|locus:2152049 - symbol:AT5G65920 species:3702 "Arabi... 127 0.00019 1
TAIR|locus:2093974 - symbol:PUB29 "plant U-box 29" specie... 125 0.00028 1
TAIR|locus:2045334 - symbol:PUB4 "plant U-box 4" species:... 139 0.00029 2
TAIR|locus:2008813 - symbol:AT1G67530 species:3702 "Arabi... 135 0.00030 3
TAIR|locus:2151641 - symbol:AT5G61560 species:3702 "Arabi... 116 0.00031 2
TAIR|locus:2117343 - symbol:AT4G25160 species:3702 "Arabi... 124 0.00033 2
WB|WBGene00010662 - symbol:K08E3.2 species:6239 "Caenorha... 121 0.00034 1
TAIR|locus:2198190 - symbol:PUB54 "plant U-box 54" specie... 120 0.00057 1
TAIR|locus:2146183 - symbol:AT5G18320 species:3702 "Arabi... 127 0.00084 2
TAIR|locus:2050659 - symbol:AT2G45920 species:3702 "Arabi... 120 0.00093 1
>UNIPROTKB|Q5VRH9 [details] [associations]
symbol:PUB12 "U-box domain-containing protein 12"
species:39947 "Oryza sativa Japonica Group" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0016567
"protein ubiquitination" evidence=IDA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00185 SMART:SM00504 UniPathway:UPA00143
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AP008212
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
HOGENOM:HOG000238412 EMBL:AP002842 EMBL:AK067611 EMBL:AK071080
RefSeq:NP_001056535.2 UniGene:Os.11259 ProteinModelPortal:Q5VRH9
EnsemblPlants:LOC_Os06g01304.1 GeneID:4339839 KEGG:osa:4339839
Gramene:Q5VRH9 eggNOG:NOG242845 OMA:KTGSPRN ProtClustDB:CLSN2695872
Uniprot:Q5VRH9
Length = 611
Score = 183 (69.5 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 55/217 (25%), Positives = 99/217 (45%)
Query: 572 IKLYTPPDTKANELTLKRLAKSAFEQQQTEGCTALTISSPPSTSEAPVNLRPSFEELHEN 631
++L+T D K + L + S + +GC S + V E H N
Sbjct: 160 LQLHTMADMKNESIALHNMVIST--AGEPDGCVDQMSSLLKKLKDCVVT------EDHAN 211
Query: 632 DEYFDKGSFLTS----IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPV 687
D + + + IP +F CP++ +L ++PV + SGQT+E I++W++ G++TCP
Sbjct: 212 DALTTRSASIKHRSPIIPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPK 271
Query: 688 TGKYLACPSLPLTNFILKRVIDGWKSENCMHLLAFAFQIVEKSRMNESKNGDETAIFILE 747
T + L+ SL NF+LK +I W N + L +K S + ++
Sbjct: 272 TQQPLSHTSLT-PNFVLKSLISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMN 330
Query: 748 QLLTVFSDQERITNAK-HLISIGGLQFLICRFESGKL 783
+L + D++R + L++ + IC E+G +
Sbjct: 331 RLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAI 367
>TAIR|locus:2014584 [details] [associations]
symbol:PUB43 "plant U-box 43" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 PROSITE:PS50176 SMART:SM00185 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005886 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC012394 GO:GO:0004842
GO:GO:0000151 UniGene:At.16778 UniGene:At.66969 HSSP:Q8VZ40
EMBL:AK226857 IPI:IPI00516849 PIR:E96791 RefSeq:NP_001077833.1
RefSeq:NP_177765.1 ProteinModelPortal:Q9SFX2 SMR:Q9SFX2
PaxDb:Q9SFX2 PRIDE:Q9SFX2 EnsemblPlants:AT1G76390.1
EnsemblPlants:AT1G76390.2 GeneID:843971 KEGG:ath:AT1G76390
TAIR:At1g76390 eggNOG:NOG276937 HOGENOM:HOG000241783
InParanoid:Q9SFX2 OMA:LTKQVMH PhylomeDB:Q9SFX2
ProtClustDB:CLSN2682757 Genevestigator:Q9SFX2 Uniprot:Q9SFX2
Length = 811
Score = 174 (66.3 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 55/214 (25%), Positives = 100/214 (46%)
Query: 630 ENDEYFDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWI----EQGNR-T 684
+N F+ G + +I + FICPLT Q+ PVTLE+GQTFE EAI++W E G +
Sbjct: 13 DNSSQFEPG--IDNIYEAFICPLTKQVMHNPVTLENGQTFEREAIEKWFQECRENGQPLS 70
Query: 685 CPVTGKYLACPSLPLTNFILKRVIDGWKSENCMHLLAFAFQIVEKSRMNESKNGDETAIF 744
CP+T K L+ L + L+ I+ W++ N A I +S N + +
Sbjct: 71 CPITSKELSITDLS-PSIALRNTIEEWRARND----ALKLDIARQSLY--LGNAETNILL 123
Query: 745 ILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCR 804
L+ + + + +I + + + ++ + +S E + + + +E D +
Sbjct: 124 ALKNVREICRNIRKIR--QRVCNPQLVRLITDMLKSSSHEVRCKALQTLQVVVEGDEESK 181
Query: 805 NQMARNINVYSLLELLHSKQVKPRTNTVLLLIDL 838
+A V ++++ L + K R V +L +L
Sbjct: 182 AIVAEGDTVRTIVKFLSQEPSKGREAAVSVLFEL 215
Score = 61 (26.5 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 34/133 (25%), Positives = 63/133 (47%)
Query: 972 VDDSTPLDDEEQASEEWL------RKLSASLLGNRKRSFLETVSKILGSRNSDLVSV--- 1022
+ ++TP EEQA+ L R L ++ R+ +F + +SKI+G R ++ +
Sbjct: 508 ISENTPTITEEQAAAAGLLAELPERDLVLTMRLLREGAFEKIISKIVGIRQGEIRGIRFE 567
Query: 1023 ------CLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQ-QKV----LAS 1071
++ +A ++ AL+ + DA + S ++LQ+ Q Q+ L +
Sbjct: 568 RTFLEGLVSILARITFALTKETDATL-FCCEKNLPSLFLDLLQSNSQDNIQRASATALEN 626
Query: 1072 MSL--LNFSKIPE 1082
+SL N +KIPE
Sbjct: 627 LSLESKNLTKIPE 639
>TAIR|locus:2079706 [details] [associations]
symbol:PUB9 "plant U-box 9" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA;IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0070696 "transmembrane receptor protein serine/threonine kinase
binding" evidence=IPI] [GO:0071215 "cellular response to abscisic
acid stimulus" evidence=IMP] [GO:0046777 "protein
autophosphorylation" evidence=RCA] InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 GO:GO:0005886 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 GO:GO:0009738
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0071215 GO:GO:0004842 GO:GO:0000151
EMBL:AC009853 HOGENOM:HOG000238412 HSSP:Q8VZ40 EMBL:AY075636
IPI:IPI00538175 RefSeq:NP_566304.1 UniGene:At.21635
ProteinModelPortal:Q9SRT0 SMR:Q9SRT0 STRING:Q9SRT0 PaxDb:Q9SRT0
PRIDE:Q9SRT0 EnsemblPlants:AT3G07360.1 GeneID:819924
KEGG:ath:AT3G07360 TAIR:At3g07360 eggNOG:NOG271821
InParanoid:Q9SRT0 OMA:LIREMIS PhylomeDB:Q9SRT0
ProtClustDB:CLSN2917129 Genevestigator:Q9SRT0 Uniprot:Q9SRT0
Length = 460
Score = 170 (64.9 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 60/213 (28%), Positives = 98/213 (46%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLT-N 701
S P++F CPL+ +L +PV L SGQT++ I++W+ GNRTCP T + L P LT N
Sbjct: 73 SCPEEFRCPLSNELMRDPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVL--PHTALTPN 130
Query: 702 FILKRVIDGWKSENCMHLLAFAFQIVEKSRMNESKNGDETAIFILEQLLTVFS-----DQ 756
+++ +I W +N + + Q + +NE + + I LL S DQ
Sbjct: 131 LLIREMISKWCKKNGLETKS---QY-HPNLVNEDETVTRSDREIFNSLLCKVSSSNLQDQ 186
Query: 757 ERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSL 816
+ L++ G +F ES +E R+ + D + + + S+
Sbjct: 187 KSAAKELRLLTRKGTEFRALFGESP--DEITRLVNPLLHGSNPDEKLQEDVVTTLLNISI 244
Query: 817 LELLHSKQVKPRTNTVLLLIDLICLSRRRDVST 849
+ + K V N + LLID + RR V+T
Sbjct: 245 HDDSNKKLVCENPNVIPLLIDAL---RRGTVAT 274
Score = 44 (20.5 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 569 IQTIKLYTPPDTKANELTLKRLAKSA-FEQQQTEGC 603
+QTI + E T++++AKS+ E +T C
Sbjct: 39 VQTIDQLQDALSALREATMRKMAKSSSLEMLETVSC 74
>TAIR|locus:2030462 [details] [associations]
symbol:SAUL1 "senescence-associated E3 ubiquitin ligase
1" species:3702 "Arabidopsis thaliana" [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0070696 "transmembrane receptor
protein serine/threonine kinase binding" evidence=IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0010115 "regulation of abscisic
acid biosynthetic process" evidence=IMP] [GO:0010150 "leaf
senescence" evidence=IMP] [GO:0010271 "regulation of chlorophyll
catabolic process" evidence=IMP] [GO:0010380 "regulation of
chlorophyll biosynthetic process" evidence=IMP] [GO:0090359
"negative regulation of abscisic acid biosynthetic process"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF00514 PROSITE:PS50176 SMART:SM00185 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005886 GO:GO:0005634 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AC069251 GO:GO:0010150
GO:GO:0010380 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0010271
GO:GO:0004842 GO:GO:0000151 HSSP:Q8VZ40 eggNOG:NOG276937
HOGENOM:HOG000241783 ProtClustDB:CLSN2682757 EMBL:AY059775
EMBL:AY096753 IPI:IPI00539405 IPI:IPI00886504 RefSeq:NP_564125.2
UniGene:At.21947 ProteinModelPortal:Q9LM76 SMR:Q9LM76 IntAct:Q9LM76
STRING:Q9LM76 PaxDb:Q9LM76 PRIDE:Q9LM76 EnsemblPlants:AT1G20780.1
GeneID:838668 KEGG:ath:AT1G20780 TAIR:At1g20780 InParanoid:Q9LM76
OMA:VARDYNL PhylomeDB:Q9LM76 Genevestigator:Q9LM76 GO:GO:0090359
Uniprot:Q9LM76
Length = 801
Score = 167 (63.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 58/215 (26%), Positives = 109/215 (50%)
Query: 630 ENDEYFDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQ---GNR--T 684
++ +F++G + I + FICPLT ++ +PVTLE+G+TFE EAI++W ++ R +
Sbjct: 11 DDSSHFERG--VDHIYEAFICPLTKEVMHDPVTLENGRTFEREAIEKWFKECRDSGRPPS 68
Query: 685 CPVTGKYLACPSLPLTNFILKRVIDGWKSENCMHLLAFAFQIVEKSRMNESKNGDETAIF 744
CP+T + L + + L+ I+ W+S N L A Q + + ++ A+
Sbjct: 69 CPLTSQELTSTDVS-ASIALRNTIEEWRSRNDAAKLDIARQSLF---LGNAETDILQALM 124
Query: 745 ILEQLL-TVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGC 803
+ Q+ T+ S++ + N++ + I + L + S ++ KA + L +E D
Sbjct: 125 HVRQICRTIRSNRHGVRNSQLIHMI--IDML--KSTSHRVRYKA-LQTLQVV-VEGDDES 178
Query: 804 RNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDL 838
+ +A V +L++ L + K R V LL +L
Sbjct: 179 KAIVAEGDTVRTLVKFLSHEPSKGREAAVSLLFEL 213
Score = 53 (23.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 27/120 (22%), Positives = 55/120 (45%)
Query: 972 VDDSTPLDDEEQASEEWLRKLSASLLGNRKR-----SFLETVSKILGSRNSDL-----VS 1021
+ + TP+ +E+ A+ L +L LG + +F + +SK+ G R D+ V+
Sbjct: 499 ISEKTPITEEQAAAAGLLAELPDRDLGLTQEMLEVGAFEKIISKVFGIRQGDIKGMRFVN 558
Query: 1022 VCLTTVAWLSHALSAQPDAEFQLSAFSA---VISQLKEILQNGEQPQQKVLASMSLLNFS 1078
L + + ++ + E + F V S +LQ+ Q +++++M+L N S
Sbjct: 559 PFLEGLVRILARITFVFNKEARAINFCREHDVASLFLHLLQSNGQDNIQMVSAMALENLS 618
Score = 41 (19.5 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 1052 SQLKEILQNGEQPQQKVLASMSLLN 1076
S L +++++G+ PQ++ A++ LN
Sbjct: 314 SSLVDLMRSGDMPQRE--AALKALN 336
Score = 37 (18.1 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 902 EAAVDAITVALEESLTDEK 920
EAA+ A++ LE+ L EK
Sbjct: 690 EAALAALSSLLEDGLDVEK 708
>TAIR|locus:2141226 [details] [associations]
symbol:PUB8 "plant U-box 8" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005871 "kinesin complex"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA;NAS] [GO:0019894
"kinesin binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 PROSITE:PS50176 SMART:SM00184 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002687
GenomeReviews:CT486007_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:AL161554 GO:GO:0008270 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:EF637083 EMBL:AL031187 EMBL:EF182720 HSSP:Q8VZ40
IPI:IPI00526364 PIR:T05177 RefSeq:NP_193866.1 UniGene:At.65012
ProteinModelPortal:O81902 SMR:O81902 PaxDb:O81902
EnsemblPlants:AT4G21350.1 GeneID:827885 KEGG:ath:AT4G21350
TAIR:At4g21350 eggNOG:NOG271823 HOGENOM:HOG000272744
InParanoid:O81902 OMA:LCKLPEN PhylomeDB:O81902
ProtClustDB:CLSN2685551 ArrayExpress:O81902 Genevestigator:O81902
Uniprot:O81902
Length = 374
Score = 147 (56.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
+P DF CP++ ++ +PV L+SG TF+ +I++WI+ GNRTCP+T L+ + N
Sbjct: 5 LPNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSETPYLIPNHA 64
Query: 704 LKRVI 708
L+ +I
Sbjct: 65 LRSLI 69
Score = 61 (26.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 38/157 (24%), Positives = 68/157 (43%)
Query: 703 ILKRVIDGWK--SENCMHLLAFAFQIVEKSRMNESKNGD-ETAIFILEQLLTVFSDQER- 758
+++R++ + S +C + A + +N++ G AI L LL V +D+ER
Sbjct: 178 VIRRIVTVLRVGSPDCKAIAATLLTSLAVVEVNKATIGSYPDAISALVSLLRVGNDRERK 237
Query: 759 --IT----------NAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQ 806
T N K ++ G + L+ +SG LE V L+ C G R +
Sbjct: 238 ESATALYALCSFPDNRKRVVDCGSVPILVEAADSG-LERAVEVLGLLVKC----RGGREE 292
Query: 807 MARNIN-VYSLLELLHSKQVKPRTNTVLLLIDLICLS 842
M++ V L+ +L + +K ++ +L L C S
Sbjct: 293 MSKVSGFVEVLVNVLRNGNLKGIQYSLFILNCLCCCS 329
>TAIR|locus:2017719 [details] [associations]
symbol:AT1G23030 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0010200 "response to
chitin" evidence=IEP] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AF000657
HOGENOM:HOG000238412 HSSP:Q8VZ40 ProtClustDB:CLSN2681864
EMBL:BT002518 EMBL:AK221923 IPI:IPI00532693 PIR:D86364
RefSeq:NP_173716.1 UniGene:At.41572 UniGene:At.74178
ProteinModelPortal:Q8GUG9 SMR:Q8GUG9 PaxDb:Q8GUG9 PRIDE:Q8GUG9
EnsemblPlants:AT1G23030.1 GeneID:838911 KEGG:ath:AT1G23030
TAIR:At1g23030 eggNOG:KOG0167 InParanoid:Q8GUG9 OMA:IDCGNLT
PhylomeDB:Q8GUG9 Genevestigator:Q8GUG9 Uniprot:Q8GUG9
Length = 612
Score = 162 (62.1 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 44/132 (33%), Positives = 73/132 (55%)
Query: 628 LHENDEYFDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPV 687
+++N + K LT IP DF+CP++ +L ++PV + +GQT+E I+ WI+ GN TCP
Sbjct: 226 VNKNTDESKKSDKLT-IPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPK 284
Query: 688 TGKYLACPSLPLT-NFILKRVIDGWKSENCMHLLAFAFQIVEKSRMNESKNGDETAIFIL 746
T + L + LT N++L+ +I W +E H + + N +GD + I L
Sbjct: 285 TQQKLE--NFTLTPNYVLRSLISRWCAE---HNIEQPAGYINGRTKN---SGDMSVIRAL 336
Query: 747 EQLLTVFSDQER 758
Q L+ S ++R
Sbjct: 337 VQRLSSRSTEDR 348
>TAIR|locus:2013990 [details] [associations]
symbol:AT1G71020 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005871 "kinesin complex" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0019894
"kinesin binding" evidence=IEA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00185 SMART:SM00504 UniPathway:UPA00143
EMBL:CP002684 GenomeReviews:CT485782_GR SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AC016972
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:AC008148 HOGENOM:HOG000238412 EMBL:AY075626 EMBL:AY142062
EMBL:AK220971 IPI:IPI00534706 PIR:E96734 RefSeq:NP_177258.3
UniGene:At.43068 HSSP:Q8VZ40 ProteinModelPortal:Q9C9A6 SMR:Q9C9A6
IntAct:Q9C9A6 PaxDb:Q9C9A6 PRIDE:Q9C9A6 EnsemblPlants:AT1G71020.1
GeneID:843442 KEGG:ath:AT1G71020 TAIR:At1g71020 eggNOG:NOG261082
InParanoid:Q9C9A6 OMA:FQARESS PhylomeDB:Q9C9A6
ProtClustDB:CLSN2681864 Genevestigator:Q9C9A6 Uniprot:Q9C9A6
Length = 628
Score = 157 (60.3 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 32/83 (38%), Positives = 52/83 (62%)
Query: 630 ENDEYFDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTG 689
EN + K LT IP+DF+CP++ +L ++P + +GQT+E I+ WI+ GN +CP T
Sbjct: 230 ENSDDSQKSDNLT-IPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQ 288
Query: 690 KYLACPSLPLT-NFILKRVIDGW 711
+ L + LT N++L+ +I W
Sbjct: 289 QKLE--NFTLTPNYVLRSLISQW 309
Score = 54 (24.1 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 226 TLRRKCFSSLNFIEPEDEGNSNESKVIASLEQAIETV 262
+L K FSS EP ++ S+ KVI LE ETV
Sbjct: 154 SLNSKKFSS-GLSEPMEKDASSNRKVIEKLESIPETV 189
Score = 45 (20.9 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 29/128 (22%), Positives = 54/128 (42%)
Query: 728 EKSRMNESKNGDETAIFILEQLLTVFSDQERITNA-------------KHLISIGG-LQF 773
++S N + AI +L +LLT D E NA K LI + G +
Sbjct: 370 KRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSIYEHNKELIMLAGAVTS 429
Query: 774 LICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVL 833
++ +G +E + AA + AD + + + + +L++LL V+ + +
Sbjct: 430 IVLVLRAGSMEARENAAATLFSLSLADEN-KIIIGASGAIMALVDLLQYGSVRGKKDAAT 488
Query: 834 LLIDLICL 841
L +L C+
Sbjct: 489 ALFNL-CI 495
Score = 45 (20.9 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 22/97 (22%), Positives = 43/97 (44%)
Query: 10 ADGFKGRRSSV-TSSRPSFREEAMSMPVYP-FGDKNKAASSSSSRIKTERARSDLSRYTL 67
A F+ R SS + R SF+ + ++ + GD S + R + +L+R L
Sbjct: 89 ATSFQARESSDGAAKRISFQFQCVTWKLEKALGDLTYDRYDISDEV---REQVELARLQL 145
Query: 68 KSDSPRISNLSGRRPRDSLVRREKVDSGSMKEHRERL 104
+ R +L+ ++ L + D+ S ++ E+L
Sbjct: 146 RRAMQRYGSLNSKKFSSGLSEPMEKDASSNRKVIEKL 182
Score = 38 (18.4 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 609 SSPPSTSEAPVNLRPSFEELHENDEYFD 636
SSPPS S+A +L HE D + D
Sbjct: 52 SSPPSESDASSSLNS-----HECDWWSD 74
Score = 37 (18.1 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 26/106 (24%), Positives = 47/106 (44%)
Query: 948 ILKPAGF-NDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRKRSFLE 1006
I +P G+ N R + NS D DL D S A + KLS+ + +R+ + E
Sbjct: 315 IEQPGGYMNGRTK-NS-DGSFRDLSGDMS--------AIRALVCKLSSQSIEDRRTAVSE 364
Query: 1007 TVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVIS 1052
S S ++ ++ + L L++ D E Q +A + +++
Sbjct: 365 IRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILN 410
>TAIR|locus:2162276 [details] [associations]
symbol:PUB15 "Plant U-Box 15" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0006944 "cellular membrane
fusion" evidence=RCA] [GO:0030048 "actin filament-based movement"
evidence=RCA] [GO:0048610 "cellular process involved in
reproduction" evidence=RCA] [GO:0048868 "pollen tube development"
evidence=RCA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 EMBL:AB016888 GO:GO:0000151 HOGENOM:HOG000238412
HSSP:Q8VZ40 EMBL:AK175585 IPI:IPI00547462 RefSeq:NP_199049.2
UniGene:At.51075 ProteinModelPortal:Q681N2 SMR:Q681N2 PaxDb:Q681N2
PRIDE:Q681N2 EnsemblPlants:AT5G42340.1 GeneID:834240
KEGG:ath:AT5G42340 TAIR:At5g42340 eggNOG:NOG263115
InParanoid:Q681N2 OMA:CCHDGSK PhylomeDB:Q681N2
ProtClustDB:CLSN2681658 Genevestigator:Q681N2 Uniprot:Q681N2
Length = 660
Score = 171 (65.3 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 39/122 (31%), Positives = 70/122 (57%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
+P +F+CP+T ++ +PV + +GQT+E E+I++W + G++TCP T + L SL NF
Sbjct: 290 LPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLA-PNFA 348
Query: 704 LKRVIDGWKSENCMHLLAFAFQIVEKSRMNESKNGDETAIFILEQLLTVFSDQERITNAK 763
LK +I W +N F+I EK +S+N + + +L + L+ +E+ + K
Sbjct: 349 LKNLIMQWCEKN-------NFKIPEKEVSPDSQNEQKDEVSLLVEALSSSQLEEQRRSVK 401
Query: 764 HL 765
+
Sbjct: 402 QM 403
Score = 40 (19.1 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 20/105 (19%), Positives = 48/105 (45%)
Query: 40 GDKNKAASSSSSRIKTERARSDLSRYTLKSDSPRISNLSGRRPRDS-LVRR--EKVDSGS 96
GD S ++K + R+D L D + + + R DS ++ R +K++ +
Sbjct: 166 GDAKDEIDSLCKQLKKAKRRTDTQDIELAVDMMVVFSKTDPRNADSAIIERLAKKLELQT 225
Query: 97 MKEHRERLAGRRSVDVQERRRSNAKSSETSQE--NEIVEVSGEES 139
+ + + +S+ +Q++ N ++ + E N+ ++ G E+
Sbjct: 226 IDDLKTETIAIQSL-IQDKGGLNIETKQHIIELLNKFKKLQGLEA 269
>TAIR|locus:2013850 [details] [associations]
symbol:CMPG1 ""CYS, MET, PRO, and GLY protein 1""
species:3702 "Arabidopsis thaliana" [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0010200 "response to chitin" evidence=IEP;RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0015824 "proline transport" evidence=RCA] [GO:0035556
"intracellular signal transduction" evidence=RCA]
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AC026480
GO:GO:0010200 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000151 UniGene:At.23473 HSSP:Q8VZ40 EMBL:AY034913
EMBL:AY063104 EMBL:AY087421 IPI:IPI00524256 PIR:D96686
RefSeq:NP_564866.1 UniGene:At.71474 ProteinModelPortal:Q9C8D1
SMR:Q9C8D1 STRING:Q9C8D1 EnsemblPlants:AT1G66160.1 GeneID:842931
KEGG:ath:AT1G66160 TAIR:At1g66160 eggNOG:NOG283749
HOGENOM:HOG000238505 InParanoid:Q9C8D1 OMA:AFSENAN PhylomeDB:Q9C8D1
ProtClustDB:CLSN2689039 Genevestigator:Q9C8D1 Uniprot:Q9C8D1
Length = 431
Score = 150 (57.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 29/70 (41%), Positives = 45/70 (64%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLP-LTN 701
+IP F CP++ +L ++PV + SG T++ E I++W E G +TCPVT L SL + N
Sbjct: 32 TIPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQTCPVTNTVLT--SLEQIPN 89
Query: 702 FILKRVIDGW 711
++R+I GW
Sbjct: 90 HTIRRMIQGW 99
Score = 54 (24.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 736 KNGDETAIFILEQLLTVFSDQERITNAKHLISIGGLQ 772
+NGD+ A F++++LL + +T+ L I G+Q
Sbjct: 224 RNGDQNAAFLIKELLEL-----NVTHVHALTKINGVQ 255
Score = 50 (22.7 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 16/67 (23%), Positives = 36/67 (53%)
Query: 1014 SRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMS 1073
S N++ + TV+ L+ L + + +L+ S+ ++L E+L+NG+Q ++ +
Sbjct: 180 SENANASLLLEETVSVLTWMLPIGLEGQSKLTTTSS-FNRLVELLRNGDQNAAFLIKELL 238
Query: 1074 LLNFSKI 1080
LN + +
Sbjct: 239 ELNVTHV 245
>RGD|1359296 [details] [associations]
symbol:Wdsub1 "WD repeat, sterile alpha motif and U-box domain
containing 1" species:10116 "Rattus norvegicus" [GO:0000151
"ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001660 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR011510 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04564 Pfam:PF07647 PROSITE:PS50082
PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320 SMART:SM00454
SMART:SM00504 RGD:1359296 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 Gene3D:3.30.40.10
InterPro:IPR013083 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004842 GeneTree:ENSGT00700000104017
GO:GO:0000151 HSSP:Q8VZ40 HOGENOM:HOG000231980 HOVERGEN:HBG080511
OrthoDB:EOG4NCMCJ CTD:151525 OMA:HCCCFSP EMBL:BC089856
IPI:IPI00391796 RefSeq:NP_001014201.1 UniGene:Rn.101918
ProteinModelPortal:Q5FVN8 PRIDE:Q5FVN8 Ensembl:ENSRNOT00000008168
GeneID:362137 KEGG:rno:362137 UCSC:RGD:1359296 InParanoid:Q5FVN8
NextBio:678784 ArrayExpress:Q5FVN8 Genevestigator:Q5FVN8
Uniprot:Q5FVN8
Length = 476
Score = 157 (60.3 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 37/86 (43%), Positives = 51/86 (59%)
Query: 628 LHENDEYFDKGSFLTS-IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCP 686
L DE + L+S IP +FICP+T +L ++PV G ++E EA++ WI + RT P
Sbjct: 387 LRSIDELRTRMESLSSGIPDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRTSP 446
Query: 687 VTGKYLACPSLPLT-NFILKRVIDGW 711
+T LA PSL LT N LK I+ W
Sbjct: 447 MTN--LALPSLVLTPNRTLKMAINRW 470
>TAIR|locus:2195563 [details] [associations]
symbol:PUB19 "plant U-box 19" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0010029 "regulation of seed germination" evidence=IGI]
InterPro:IPR001841 InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00184 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0010029 GO:GO:0004842 GO:GO:0000151
EMBL:AC004473 HOGENOM:HOG000238412 HSSP:Q8VZ40 eggNOG:NOG251934
ProtClustDB:CLSN2679599 IPI:IPI00530780 PIR:T02271
RefSeq:NP_176225.1 UniGene:At.66059 ProteinModelPortal:O80742
SMR:O80742 PaxDb:O80742 PRIDE:O80742 EnsemblPlants:AT1G60190.1
GeneID:842314 KEGG:ath:AT1G60190 TAIR:At1g60190 InParanoid:O80742
OMA:TELHVAM PhylomeDB:O80742 Genevestigator:O80742 Uniprot:O80742
Length = 686
Score = 159 (61.0 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 45/165 (27%), Positives = 83/165 (50%)
Query: 630 ENDEYFDKGSFLTSIPQDFI-CPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVT 688
E D+ D + S+ D + CP++ ++ +PV LESG T++ +I +W GN TCP T
Sbjct: 263 EKDKEEDDLMMVRSLNVDDLRCPISLEIMSDPVVLESGHTYDRSSITKWFASGNITCPKT 322
Query: 689 GKYLACPSLPLTNFILKRVIDGWKSENCMHLLAFAFQIVEKSR-MNESKNGDETAIFILE 747
GK L L + NF +K+VI + +N + + + V+ + + + G TA F+
Sbjct: 323 GKTLVSTVL-VDNFSVKQVIQSYSKQNGVVMGQKGKKKVDVAESLAAEEAGKLTAEFLAG 381
Query: 748 QLLTVFSDQERITNAK---HLISIGGLQFLICRFESGKLEEKARV 789
+L+ D+E + A +++ + C E+G +E ++
Sbjct: 382 ELIK--GDEEEMVKALVEIRILTKTSTFYRSCLVEAGVVESLMKI 424
>TAIR|locus:2082682 [details] [associations]
symbol:PUB14 "plant U-box 14" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005871 "kinesin complex" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA;ISS] [GO:0019894 "kinesin binding"
evidence=IEA] [GO:0070696 "transmembrane receptor protein
serine/threonine kinase binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046777 "protein autophosphorylation"
evidence=RCA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 EMBL:AL049655
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 HOGENOM:HOG000238412
eggNOG:NOG242845 OMA:KTGSPRN EMBL:AY065279 EMBL:AY096530
IPI:IPI00539579 PIR:T06735 RefSeq:NP_191045.2 UniGene:At.28098
PDB:1T1H PDBsum:1T1H ProteinModelPortal:Q8VZ40 SMR:Q8VZ40
IntAct:Q8VZ40 STRING:Q8VZ40 PaxDb:Q8VZ40 PRIDE:Q8VZ40
EnsemblPlants:AT3G54850.1 GeneID:824650 KEGG:ath:AT3G54850
TAIR:At3g54850 InParanoid:Q8VZ40 PhylomeDB:Q8VZ40
ProtClustDB:CLSN2690608 EvolutionaryTrace:Q8VZ40
Genevestigator:Q8VZ40 GermOnline:AT3G54850 Uniprot:Q8VZ40
Length = 632
Score = 158 (60.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 40/143 (27%), Positives = 77/143 (53%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
IP+ F CP++ +L ++PV + +GQT+E +I++W++ G++TCP + + L L N++
Sbjct: 248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT-PNYV 306
Query: 704 LKRVIDGWKSENCMHLLAFAFQI-VEKSRMNESKNGDETAIF-ILEQLLTVFSDQERITN 761
LK +I W N + L K + S + D T + +LE+L ++Q+R
Sbjct: 307 LKSLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAA 366
Query: 762 AK-HLISIGGLQFLICRFESGKL 783
+ L++ + +C E+G +
Sbjct: 367 GELRLLAKRNVDNRVCIAEAGAI 389
>MGI|MGI:1919387 [details] [associations]
symbol:Wdsub1 "WD repeat, SAM and U-box domain containing 1"
species:10090 "Mus musculus" [GO:0000151 "ubiquitin ligase complex"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0016567 "protein
ubiquitination" evidence=IEA] InterPro:IPR017986 InterPro:IPR001660
InterPro:IPR001680 InterPro:IPR003613 InterPro:IPR011510
InterPro:IPR015943 Pfam:PF00400 Pfam:PF04564 Pfam:PF07647
PROSITE:PS50082 PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320
SMART:SM00454 SMART:SM00504 MGI:MGI:1919387 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 Gene3D:3.30.40.10
InterPro:IPR013083 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004842 GeneTree:ENSGT00700000104017
GO:GO:0000151 HSSP:Q8VZ40 HOGENOM:HOG000231980 HOVERGEN:HBG080511
OrthoDB:EOG4NCMCJ CTD:151525 OMA:HCCCFSP EMBL:AK011391
EMBL:AL929242 EMBL:BC050792 EMBL:BC061948 IPI:IPI00132574
RefSeq:NP_001153108.1 RefSeq:NP_082394.1 UniGene:Mm.288734
UniGene:Mm.488684 ProteinModelPortal:Q9D0I6 SMR:Q9D0I6
PhosphoSite:Q9D0I6 PRIDE:Q9D0I6 Ensembl:ENSMUST00000028368
GeneID:72137 KEGG:mmu:72137 UCSC:uc008jto.2 InParanoid:Q9D0I6
NextBio:335536 Bgee:Q9D0I6 CleanEx:MM_WDSUB1 Genevestigator:Q9D0I6
Uniprot:Q9D0I6
Length = 474
Score = 156 (60.0 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 639 SFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLP 698
S + IP +FICP+T +L ++PV G ++E EA++ WI + RT P+T LA PSL
Sbjct: 397 SLSSGIPDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRTSPMTN--LALPSLV 454
Query: 699 LT-NFILKRVIDGW 711
LT N LK I+ W
Sbjct: 455 LTPNRTLKMAINRW 468
>TAIR|locus:2169861 [details] [associations]
symbol:AT5G37490 species:3702 "Arabidopsis thaliana"
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0010200 "response to chitin"
evidence=IEP;RCA] [GO:0002679 "respiratory burst involved in
defense response" evidence=RCA] [GO:0009693 "ethylene biosynthetic
process" evidence=RCA] [GO:0035556 "intracellular signal
transduction" evidence=RCA] InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143
EMBL:CP002688 GenomeReviews:BA000015_GR SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0010200
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:AB025630 HSSP:Q8VZ40 HOGENOM:HOG000238505 EMBL:BT020311
EMBL:BT020439 IPI:IPI00541809 RefSeq:NP_198565.1 UniGene:At.30484
ProteinModelPortal:Q5PNY6 SMR:Q5PNY6 STRING:Q5PNY6 PRIDE:Q5PNY6
EnsemblPlants:AT5G37490.1 GeneID:833727 KEGG:ath:AT5G37490
TAIR:At5g37490 eggNOG:NOG287305 InParanoid:Q5PNY6 OMA:HAPLRHE
PhylomeDB:Q5PNY6 ProtClustDB:CLSN2916550 Genevestigator:Q5PNY6
Uniprot:Q5PNY6
Length = 435
Score = 155 (59.6 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 58/237 (24%), Positives = 107/237 (45%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC-PSLPLTN 701
+IP +F CP++ L ++PV + +G T++ +I+ WI GN+TCPVT L +P N
Sbjct: 30 TIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSGNKTCPVTNTVLTTFDQIP--N 87
Query: 702 FILKRVIDGWKSENCMHLLA---------FAFQIVEKSRMNES--KNGD-ETAIFILEQL 749
++++I GW E L+ ++ E SR S + GD E I+E++
Sbjct: 88 HTIRKMIQGWCVEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDYEKCGVIIEKI 147
Query: 750 LTVFSDQERITNAKHLISIGGLQFLICR-FESGKLEEKA-----RVAALMCCCIEADAGC 803
+ + E+ + S+G +++C F+ +EK + +L+
Sbjct: 148 KKLGDESEKNRKCVNENSVG---WVLCDCFDKFSGDEKLTFMLNEILSLLTWMFPIGLEG 204
Query: 804 RNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELV 860
+++A + + LL S R N ++ +++ L R S + N E LV
Sbjct: 205 ISKLASATSFRCVAGLLKSTDDSVRQNAAFIMKEILSLDETRVHSFAVENGVAEALV 261
>UNIPROTKB|F1MRF3 [details] [associations]
symbol:WDSUB1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001660 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR011510 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04564 Pfam:PF07647 PROSITE:PS50082
PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320 SMART:SM00454
SMART:SM00504 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320
Gene3D:3.30.40.10 InterPro:IPR013083 Gene3D:1.10.150.50
InterPro:IPR013761 SUPFAM:SSF47769 GO:GO:0004842
GeneTree:ENSGT00700000104017 GO:GO:0000151 CTD:151525
EMBL:DAAA02004471 IPI:IPI00702869 RefSeq:XP_002685394.1
UniGene:Bt.105170 ProteinModelPortal:F1MRF3
Ensembl:ENSBTAT00000005476 GeneID:783784 KEGG:bta:783784
NextBio:20926301 Uniprot:F1MRF3
Length = 476
Score = 154 (59.3 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 40/123 (32%), Positives = 65/123 (52%)
Query: 595 FEQQQTEGCTALTISSPPSTSEAPV-NLRPSFEELHENDEYFDKGSFLTS-IPQDFICPL 652
F+ +G L ++ + + +L + L + +E K L+S IP +FICP+
Sbjct: 352 FKMNNIDGRELLNLTKESLADDLKIESLGLRSKVLRKIEELRTKVKTLSSEIPDEFICPI 411
Query: 653 TGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLT-NFILKRVIDGW 711
T +L ++P+ G ++E EA++ WI + RT P+T L+ S+ LT N LK ID W
Sbjct: 412 TRELMKDPIIASDGYSYEKEAMENWISRKKRTSPMTNLVLS--SVILTPNRTLKMAIDRW 469
Query: 712 KSE 714
SE
Sbjct: 470 LSE 472
>UNIPROTKB|G3MZA8 [details] [associations]
symbol:WDSUB1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001660 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR011510 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04564 Pfam:PF07647 PROSITE:PS50082
PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320 SMART:SM00454
SMART:SM00504 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320
Gene3D:3.30.40.10 InterPro:IPR013083 Gene3D:1.10.150.50
InterPro:IPR013761 SUPFAM:SSF47769 GO:GO:0004842
GeneTree:ENSGT00700000104017 GO:GO:0000151 OMA:HCCCFSP
EMBL:DAAA02004471 ProteinModelPortal:G3MZA8
Ensembl:ENSBTAT00000064632 Uniprot:G3MZA8
Length = 477
Score = 154 (59.3 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 40/123 (32%), Positives = 65/123 (52%)
Query: 595 FEQQQTEGCTALTISSPPSTSEAPV-NLRPSFEELHENDEYFDKGSFLTS-IPQDFICPL 652
F+ +G L ++ + + +L + L + +E K L+S IP +FICP+
Sbjct: 353 FKMNNIDGRELLNLTKESLADDLKIESLGLRSKVLRKIEELRTKVKTLSSEIPDEFICPI 412
Query: 653 TGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLT-NFILKRVIDGW 711
T +L ++P+ G ++E EA++ WI + RT P+T L+ S+ LT N LK ID W
Sbjct: 413 TRELMKDPIIASDGYSYEKEAMENWISRKKRTSPMTNLVLS--SVILTPNRTLKMAIDRW 470
Query: 712 KSE 714
SE
Sbjct: 471 LSE 473
>TAIR|locus:2181077 [details] [associations]
symbol:SAUR21 "SMALL AUXIN UP RNA 21" species:3702
"Arabidopsis thaliana" [GO:0000151 "ubiquitin ligase complex"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0010200 "response to chitin" evidence=IEP] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AL162351
HOGENOM:HOG000238412 HSSP:Q8VZ40 EMBL:BT015367 EMBL:BT015725
EMBL:AK229397 IPI:IPI00524109 PIR:T48204 RefSeq:NP_195803.1
UniGene:At.33496 ProteinModelPortal:Q9LZW3 SMR:Q9LZW3 PRIDE:Q9LZW3
EnsemblPlants:AT5G01830.1 GeneID:831850 KEGG:ath:AT5G01830
TAIR:At5g01830 eggNOG:NOG307369 InParanoid:Q9LZW3 OMA:IPADFRC
PhylomeDB:Q9LZW3 ProtClustDB:CLSN2687143 Genevestigator:Q9LZW3
Uniprot:Q9LZW3
Length = 674
Score = 163 (62.4 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 44/159 (27%), Positives = 77/159 (48%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNF 702
+IP DF CP+T +L +PV + +GQT++ E+I WI+ G+ TCP TG+ L SL + N
Sbjct: 273 NIPADFRCPITLELMRDPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVLKHTSL-VPNR 331
Query: 703 ILKRVIDGWKSENCMHLLAFAFQIVEKSRMNESKNGDETAIFILEQLLTVFSDQERITNA 762
LK +I W + + + E + E+ + + L + L+V +D +
Sbjct: 332 ALKNLIVLWCRDQKIPFELYGDGGGEPAPCKEAVEFTKMMVSFLIEKLSV-ADSNGVVFE 390
Query: 763 KHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADA 801
++ C E+G + + R A C ++ +A
Sbjct: 391 LRALAKSDTVARACIAEAGAIPKLVRYLATECPSLQINA 429
Score = 41 (19.5 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 381 RKMKLLEKVYNEILDSGTYQFAVY 404
RK+K+L V++E+L + Q VY
Sbjct: 63 RKVKILASVFDELLLPRS-QLVVY 85
Score = 39 (18.8 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 221 EDFRATLRRKCFSSLNFIEPED 242
+D + L ++C S+ F++ D
Sbjct: 155 QDLISLLTKQCSDSVQFVDARD 176
Score = 37 (18.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 93 DSGSMKEHRERLAGRRSVDVQERRRSNAKS 122
DS S+ + +RL + +R +S A S
Sbjct: 212 DSASLTDEIQRLEDEIQDQIDDRSKSAAAS 241
>UNIPROTKB|Q8N9V3 [details] [associations]
symbol:WDSUB1 "WD repeat, SAM and U-box domain-containing
protein 1" species:9606 "Homo sapiens" [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] InterPro:IPR017986 InterPro:IPR001660
InterPro:IPR001680 InterPro:IPR003613 InterPro:IPR011510
InterPro:IPR015943 Pfam:PF00400 Pfam:PF04564 Pfam:PF07647
PROSITE:PS50082 PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320
SMART:SM00454 SMART:SM00504 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 Gene3D:3.30.40.10
InterPro:IPR013083 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004842 GO:GO:0000151 HSSP:Q8VZ40
EMBL:AC009307 HOGENOM:HOG000231980 HOVERGEN:HBG080511
OrthoDB:EOG4NCMCJ EMBL:AK093494 EMBL:AC008277 EMBL:BC029520
IPI:IPI00167822 IPI:IPI00477952 RefSeq:NP_001121684.1
RefSeq:NP_689741.2 UniGene:Hs.20848 ProteinModelPortal:Q8N9V3
SMR:Q8N9V3 PhosphoSite:Q8N9V3 DMDM:229463016 PaxDb:Q8N9V3
PRIDE:Q8N9V3 Ensembl:ENST00000358147 Ensembl:ENST00000359774
Ensembl:ENST00000392796 Ensembl:ENST00000409990 GeneID:151525
KEGG:hsa:151525 UCSC:uc010foo.3 CTD:151525 GeneCards:GC02M160092
HGNC:HGNC:26697 HPA:HPA036840 neXtProt:NX_Q8N9V3
PharmGKB:PA128394761 InParanoid:Q8N9V3 OMA:HCCCFSP PhylomeDB:Q8N9V3
GenomeRNAi:151525 NextBio:86717 ArrayExpress:Q8N9V3 Bgee:Q8N9V3
CleanEx:HS_WDSUB1 Genevestigator:Q8N9V3 Uniprot:Q8N9V3
Length = 476
Score = 151 (58.2 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 42/128 (32%), Positives = 65/128 (50%)
Query: 587 LKRLAKSAFEQQQTEGCTALTISSPPSTSEAPV-NLRPSFEELHENDEYFDKGSFLTS-I 644
LK L F+ +G L ++ + + +L + L + +E K L+S I
Sbjct: 346 LKDLV-GIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRKIEELRTKVKSLSSGI 404
Query: 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLT-NFI 703
P +FICP+T +L ++PV G ++E EA++ WI + RT P+T L PS LT N
Sbjct: 405 PDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTN--LVLPSAVLTPNRT 462
Query: 704 LKRVIDGW 711
LK I+ W
Sbjct: 463 LKMAINRW 470
>UNIPROTKB|E2QX39 [details] [associations]
symbol:WDSUB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001660 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR015943 Pfam:PF00400 Pfam:PF04564
PROSITE:PS50082 PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320
SMART:SM00454 SMART:SM00504 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 InterPro:IPR020472
PRINTS:PR00320 Gene3D:3.30.40.10 InterPro:IPR013083
Gene3D:1.10.150.50 InterPro:IPR013761 InterPro:IPR021129
Pfam:PF00536 SUPFAM:SSF47769 GO:GO:0004842
GeneTree:ENSGT00700000104017 GO:GO:0000151 CTD:151525 OMA:HCCCFSP
EMBL:AAEX03017692 RefSeq:XP_535926.3 Ensembl:ENSCAFT00000039730
GeneID:478761 KEGG:cfa:478761 NextBio:20854042 Uniprot:E2QX39
Length = 476
Score = 147 (56.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 34/86 (39%), Positives = 50/86 (58%)
Query: 628 LHENDEYFDKGSFLTS-IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCP 686
L + +E K L+S IP +F+CP+T +L ++PV G ++E EA++ WI + RT P
Sbjct: 387 LRKIEELRTKVKALSSGIPDEFLCPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSP 446
Query: 687 VTGKYLACPSLPLT-NFILKRVIDGW 711
+T L PS+ LT N LK I W
Sbjct: 447 MTN--LILPSMVLTPNRTLKMAISRW 470
>TAIR|locus:2012136 [details] [associations]
symbol:PUB26 "plant U-box 26" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AC011807 HSSP:Q8VZ40
HOGENOM:HOG000238505 eggNOG:NOG262907 ProtClustDB:CLSN2682687
EMBL:AK118346 EMBL:BT029013 IPI:IPI00542667 PIR:E96534
RefSeq:NP_175400.1 UniGene:At.38168 ProteinModelPortal:Q9FXA4
SMR:Q9FXA4 EnsemblPlants:AT1G49780.1 GeneID:841401
KEGG:ath:AT1G49780 TAIR:At1g49780 InParanoid:Q9FXA4 OMA:CTERAKR
PhylomeDB:Q9FXA4 Genevestigator:Q9FXA4 Uniprot:Q9FXA4
Length = 421
Score = 146 (56.5 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
IP F CP++ L +PVT+ +GQT++ +I WI GN TCPVT L+ +L + N
Sbjct: 14 IPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALSDFTL-IPNHT 72
Query: 704 LKRVIDGW 711
L+R+I W
Sbjct: 73 LRRLIQEW 80
>UNIPROTKB|Q0IMG9 [details] [associations]
symbol:SPL11 "E3 ubiquitin-protein ligase SPL11"
species:39947 "Oryza sativa Japonica Group" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0016567 "protein
ubiquitination" evidence=IDA] [GO:0031348 "negative regulation of
defense response" evidence=IMP] [GO:0043069 "negative regulation of
programmed cell death" evidence=IMP] [GO:0048586 "regulation of
long-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 GO:GO:0005829 GO:GO:0005634
GO:GO:0006952 SUPFAM:SSF48371 GO:GO:0031348 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0043069 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0009908 GO:GO:0004842 GO:GO:0000151
EMBL:DP000011 EMBL:AP008218 GO:GO:0048586 eggNOG:NOG242845
EMBL:AY652589 EMBL:AY652590 EMBL:AK105835 RefSeq:NP_001067077.2
UniGene:Os.21174 ProteinModelPortal:Q0IMG9 SMR:Q0IMG9
GeneID:4352575 KEGG:dosa:Os03t0275900-01 KEGG:dosa:Os12t0570000-01
KEGG:osa:4352575 Gramene:Q0IMG9 Uniprot:Q0IMG9
Length = 694
Score = 154 (59.3 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 39/143 (27%), Positives = 78/143 (54%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNF 702
+IP +F CP++ +L ++PV + +GQT+E I++WI G+ TCP T + ++ +L N+
Sbjct: 272 TIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALT-PNY 330
Query: 703 ILKRVIDGWKSENCMHLLAFAFQIVEKS-RMNESKNGDETAIFILEQLLTVFSDQERITN 761
+L+ +I W N M + Q + + + S+ + A+ L +L + ++++R
Sbjct: 331 VLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDAL--LSKLCSPDTEEQRSAA 388
Query: 762 AK-HLISIGGLQFLICRFESGKL 783
A+ L++ IC E+G +
Sbjct: 389 AELRLLAKRNANNRICIAEAGAI 411
Score = 44 (20.5 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 80 RRPRDSLVRREKVDSGSMKEHRERLAGRRSVDVQERRRSNAKSSETSQENEIVEVSGEES 139
RR +L RR ++ ++E RER G + +E R+ A ++ + + G E
Sbjct: 50 RRQLLALSRRIRLLGPFVEELRERRRGEG--EGEEEERALAPLADALEAALALLRLGREG 107
Query: 140 QRVSINLD 147
R+S+ L+
Sbjct: 108 SRISLVLE 115
>TAIR|locus:2198165 [details] [associations]
symbol:AT1G01660 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 Pfam:PF04564 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC009273 GO:GO:0004842
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151 eggNOG:KOG0167
HOGENOM:HOG000115794 IPI:IPI00527810 PIR:E86147 RefSeq:NP_171672.1
UniGene:At.51449 ProteinModelPortal:P0C6E7 SMR:P0C6E7 PRIDE:P0C6E7
EnsemblPlants:AT1G01660.1 GeneID:839461 KEGG:ath:AT1G01660
TAIR:At1g01660 InParanoid:P0C6E7 PhylomeDB:P0C6E7
ProtClustDB:CLSN2912787 Genevestigator:P0C6E7 Uniprot:P0C6E7
Length = 568
Score = 140 (54.3 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 31/96 (32%), Positives = 48/96 (50%)
Query: 621 LRPSFEELHENDEYF-DKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIE 679
L S+ H F D+ S P FICP++ ++ EP G T+E E+++EW++
Sbjct: 473 LLQSYTRRHGTPSGFSDEDSVTRQPPSYFICPISQEVMREPRVAADGFTYEAESLREWLD 532
Query: 680 QGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSEN 715
G+ T P+T LA +L + N L+ I W N
Sbjct: 533 NGHETSPMTNLKLAHNNL-VPNHALRSAIQEWLQRN 567
Score = 56 (24.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 26/134 (19%), Positives = 53/134 (39%)
Query: 49 SSSRIKTERARSDLSRYTLKSDSPRISNLSGRRPRDSLVRREKVDSGSMKEHRERLAGRR 108
++S ++E R+D LK + S R + VRR K ++ +++ R
Sbjct: 212 NASEDQSESDRNDQLYRQLKQALMEVEE-SKREAYEECVRRFKAENTAVEAIRSAREYEA 270
Query: 109 SVDVQERRRSNAKSSETSQENEIVEVSGEESQRVSINLDTRHS-NVDNRKSMKENEPGND 167
+ + + R K + Q + + E + I L+ R N + R+ ++ E
Sbjct: 271 MYNEEAKLRKEGKEALAKQRKMVEKTKQERDDALIIILNGRKLYNEELRRRVEAEEMLGK 330
Query: 168 RYNRSSMSRKSIKE 181
++K I+E
Sbjct: 331 EKEEHERTKKEIEE 344
Score = 41 (19.5 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 20/117 (17%), Positives = 49/117 (41%)
Query: 56 ERARSDLS--RYTLKSDSPRISNLSGRRPRDSLVRREKVDSGSMKEHRER--LAGRRSVD 111
ER + ++ R ++ + L R+ + ++R++ + K+ +E + + +
Sbjct: 336 ERTKKEIEEVRAIVQDGTLYNEQLRHRKEMEESMKRQEEELEKTKKEKEEACMISKNLMQ 395
Query: 112 VQE---RRRSNAKSSETSQENEIVEVSGEESQRVSI--NLDTRHSNVDNRKSMKENE 163
+ E R+R A+ + E+ +V E+ + S+ N + R+ E E
Sbjct: 396 LYEDEVRQRKEAEELVKRRREELEKVKKEKEEACSVGQNFMRLYEEEARRRKGTEEE 452
Score = 39 (18.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 27/151 (17%), Positives = 57/151 (37%)
Query: 44 KAASSSSSRIKTERARSDLSRYTLKSDSPRISNLSGRRPRDSLVRREKVDSGSMKEHRER 103
K A K E + R+ K+++ + + R +++ E + KE +E
Sbjct: 231 KQALMEVEESKREAYEECVRRF--KAENTAVEAIRSAREYEAMYNEE---AKLRKEGKEA 285
Query: 104 LAGRRS-VDVQERRRSNAKS---SETSQENEIVEVSGEESQRVSINLDTRHSNVDNRKSM 159
LA +R V+ ++ R +A + NE + E + + + + +
Sbjct: 286 LAKQRKMVEKTKQERDDALIIILNGRKLYNEELRRRVEAEEMLGKEKEEHERTKKEIEEV 345
Query: 160 KENEPGNDRYNRSSMSRKSIKENYRKHESVL 190
+ YN RK ++E+ ++ E L
Sbjct: 346 RAIVQDGTLYNEQLRHRKEMEESMKRQEEEL 376
Score = 37 (18.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 516 TEDDSPKIAQDDLFHPEDELLLAAEEGWR 544
+ED S D L+ + L+ EE R
Sbjct: 214 SEDQSESDRNDQLYRQLKQALMEVEESKR 242
>TAIR|locus:2144846 [details] [associations]
symbol:AT5G09800 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] [GO:0010200 "response to chitin" evidence=IEP;RCA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002688 GenomeReviews:BA000015_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0010200
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:AB020752 EMBL:AL353994 HSSP:Q8VZ40 HOGENOM:HOG000238505
eggNOG:NOG315056 ProtClustDB:CLSN2684525 EMBL:BT010883
EMBL:AK175195 EMBL:AK176549 IPI:IPI00520675 PIR:T49918
RefSeq:NP_196542.1 UniGene:At.32456 ProteinModelPortal:Q9LXE3
SMR:Q9LXE3 IntAct:Q9LXE3 EnsemblPlants:AT5G09800.1 GeneID:830840
KEGG:ath:AT5G09800 TAIR:At5g09800 InParanoid:Q9LXE3 OMA:RSEICDG
PhylomeDB:Q9LXE3 Genevestigator:Q9LXE3 Uniprot:Q9LXE3
Length = 409
Score = 140 (54.3 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 640 FLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPL 699
++T++P F CP++ + + PV+L +G T++ +I+ W++ GN TCP T + L +
Sbjct: 7 YITTVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQNKEF-V 65
Query: 700 TNFILKRVIDGW 711
N L R+ID W
Sbjct: 66 PNLTLHRLIDHW 77
Score = 51 (23.0 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 896 KYSIYREAAVDAITVALEESLTDEKIQEKCCRAL 929
K ++ RE V +T L + T + EKC + L
Sbjct: 266 KLALIREKLVTKLTSLLTDPTTSVSVTEKCLKLL 299
>UNIPROTKB|Q5ZMC3 [details] [associations]
symbol:WDSUB1 "WD repeat, SAM and U-box domain-containing
protein 1" species:9031 "Gallus gallus" [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] InterPro:IPR017986 InterPro:IPR001660
InterPro:IPR001680 InterPro:IPR003613 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04564 PROSITE:PS50082 PROSITE:PS50105
PROSITE:PS50294 SMART:SM00320 SMART:SM00454 SMART:SM00504
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
Gene3D:3.30.40.10 InterPro:IPR013083 Gene3D:1.10.150.50
InterPro:IPR013761 InterPro:IPR021129 Pfam:PF00536 SUPFAM:SSF47769
GO:GO:0004842 GeneTree:ENSGT00700000104017 GO:GO:0000151
HSSP:P16649 EMBL:AJ719461 IPI:IPI00588518 UniGene:Gga.5996
ProteinModelPortal:Q5ZMC3 Ensembl:ENSGALT00000020533
HOGENOM:HOG000231980 HOVERGEN:HBG080511 InParanoid:Q5ZMC3
OrthoDB:EOG4NCMCJ Uniprot:Q5ZMC3
Length = 476
Score = 144 (55.7 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 43/148 (29%), Positives = 73/148 (49%)
Query: 568 KIQTIKLYTPPDTKANELTLKRLAK--SAFEQQQTEGCTALTISSPPSTSEAPVNLRPSF 625
KI+T + ++ D A L + A+ F+ +G + ++ E ++L
Sbjct: 326 KIRTAENWSEDDVSA-WLCAQGFAELVGLFKANNIDGKELVNLTRESLIHELKMSLWLRS 384
Query: 626 EELHENDEYFDKG-SFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRT 684
+ L + +E K S ++P +F+CP+T +L ++PV G ++E EA++ WI R+
Sbjct: 385 KILQKIEELRMKMVSVPVAVPDEFLCPITRELMKDPVIAADGYSYEKEAMENWISNNRRS 444
Query: 685 CPVTGKYLACPSLPLT-NFILKRVIDGW 711
P+T L PSL LT N LK I W
Sbjct: 445 SPMTN--LPLPSLVLTPNRTLKMAISRW 470
>TAIR|locus:2158252 [details] [associations]
symbol:AT5G67340 species:3702 "Arabidopsis thaliana"
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0000165
"MAPK cascade" evidence=RCA] [GO:0006499 "N-terminal protein
myristoylation" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0006865 "amino acid transport"
evidence=RCA] [GO:0006944 "cellular membrane fusion" evidence=RCA]
[GO:0006984 "ER-nucleus signaling pathway" evidence=RCA]
[GO:0007154 "cell communication" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009414 "response to water
deprivation" evidence=RCA] [GO:0009611 "response to wounding"
evidence=RCA] [GO:0009627 "systemic acquired resistance"
evidence=RCA] [GO:0009697 "salicylic acid biosynthetic process"
evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0010363 "regulation of plant-type hypersensitive
response" evidence=RCA] [GO:0030968 "endoplasmic reticulum unfolded
protein response" evidence=RCA] [GO:0031348 "negative regulation of
defense response" evidence=RCA] [GO:0034976 "response to
endoplasmic reticulum stress" evidence=RCA] [GO:0042538
"hyperosmotic salinity response" evidence=RCA] [GO:0043069
"negative regulation of programmed cell death" evidence=RCA]
[GO:0050832 "defense response to fungus" evidence=RCA]
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AB007645 HOGENOM:HOG000238412
HSSP:Q8VZ40 EMBL:BT015818 EMBL:BT020206 EMBL:AK229487
IPI:IPI00537014 RefSeq:NP_201535.3 UniGene:At.28815
ProteinModelPortal:Q5XEZ8 SMR:Q5XEZ8 STRING:Q5XEZ8 PaxDb:Q5XEZ8
PRIDE:Q5XEZ8 EnsemblPlants:AT5G67340.1 GeneID:836869
KEGG:ath:AT5G67340 TAIR:At5g67340 eggNOG:NOG269447
InParanoid:Q5XEZ8 OMA:LASWCET PhylomeDB:Q5XEZ8
ProtClustDB:CLSN2681130 Genevestigator:Q5XEZ8 Uniprot:Q5XEZ8
Length = 707
Score = 146 (56.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 44/133 (33%), Positives = 71/133 (53%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
+P DF C L+ +L +PV + SGQTFE I++WI+ G CP T + L+ +L NFI
Sbjct: 240 VPSDFRCSLSLELMTDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQALSHTTLT-PNFI 298
Query: 704 LKRVIDGWKSENCMH------LLAFA--FQI-VEKSRMNESKNGDETAIFILEQLLTVFS 754
++ + W N ++ L+ + F + VE R + S+NG ++ E+L VFS
Sbjct: 299 VRAFLASWCETNNVYPPDPLELIHSSEPFPLLVESVRASSSENGHSESLDA-EELRQVFS 357
Query: 755 DQERITNAKHLIS 767
R +A ++S
Sbjct: 358 ---RSASAPGIVS 367
>TAIR|locus:2013688 [details] [associations]
symbol:PUB17 "plant U-box 17" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0016567 "protein ubiquitination" evidence=IEA;IDA] [GO:0009626
"plant-type hypersensitive response" evidence=IGI] [GO:0009814
"defense response, incompatible interaction" evidence=IMP]
[GO:0009817 "defense response to fungus, incompatible interaction"
evidence=IGI] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0009817 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 UniGene:At.17411 EMBL:AC068667
GO:GO:0000151 eggNOG:NOG329430 HOGENOM:HOG000238412 OMA:ENRAYIA
HSSP:Q8VZ40 EMBL:AY064045 EMBL:AY150512 IPI:IPI00523315 PIR:A86416
RefSeq:NP_174228.1 UniGene:At.27415 ProteinModelPortal:Q9C7R6
SMR:Q9C7R6 IntAct:Q9C7R6 STRING:Q9C7R6 PRIDE:Q9C7R6
EnsemblPlants:AT1G29340.1 GeneID:839808 KEGG:ath:AT1G29340
TAIR:At1g29340 InParanoid:Q9C7R6 PhylomeDB:Q9C7R6
ProtClustDB:CLSN2679704 Genevestigator:Q9C7R6 Uniprot:Q9C7R6
Length = 729
Score = 156 (60.0 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 639 SFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLP 698
+F+T +P+DF+CP++ L +PV + +GQT++ +I WIE+G+ TCP TG+ L S
Sbjct: 301 TFIT-VPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLM-DSRI 358
Query: 699 LTNFILKRVIDGW 711
+ N LK +I W
Sbjct: 359 VPNRALKNLIVQW 371
Score = 40 (19.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 1035 SAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLA-SMSLL------NFSKIPECGAV 1086
SA P + + A A +S L + L +G Q Q V A + LL N + I E GA+
Sbjct: 393 SALP-TKAAVEANKATVSILIKYLADGSQAAQTVAAREIRLLAKTGKENRAYIAEAGAI 450
>TAIR|locus:2075140 [details] [associations]
symbol:PUB13 "plant U-box 13" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0016567
"protein ubiquitination" evidence=IEA;IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070696 "transmembrane receptor protein serine/threonine kinase
binding" evidence=IPI] [GO:0042742 "defense response to bacterium"
evidence=IGI] [GO:0000902 "cell morphogenesis" evidence=RCA]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006499 "N-terminal protein myristoylation" evidence=RCA]
[GO:0016049 "cell growth" evidence=RCA] [GO:0032880 "regulation of
protein localization" evidence=RCA] [GO:0046777 "protein
autophosphorylation" evidence=RCA] [GO:0048193 "Golgi vesicle
transport" evidence=RCA] [GO:0048767 "root hair elongation"
evidence=RCA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 GO:GO:0005829 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0042742 EMBL:AL133314
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
HOGENOM:HOG000238412 HSSP:Q8VZ40 EMBL:AY042791 EMBL:AY128813
IPI:IPI00531350 PIR:T45588 RefSeq:NP_190235.1 UniGene:At.23070
ProteinModelPortal:Q9SNC6 SMR:Q9SNC6 STRING:Q9SNC6 PaxDb:Q9SNC6
PRIDE:Q9SNC6 EnsemblPlants:AT3G46510.1 GeneID:823804
KEGG:ath:AT3G46510 TAIR:At3g46510 eggNOG:NOG269633
InParanoid:Q9SNC6 OMA:DSRIQEH PhylomeDB:Q9SNC6
ProtClustDB:CLSN2684834 Genevestigator:Q9SNC6 Uniprot:Q9SNC6
Length = 660
Score = 154 (59.3 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
IP DF CP++ ++ +PV + SGQT+E I++WIE G+ TCP T + L +L N++
Sbjct: 256 IPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLT-PNYV 314
Query: 704 LKRVIDGWKSEN 715
L+ +I W N
Sbjct: 315 LRSLIAQWCEAN 326
Score = 41 (19.5 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 198 LDEVAVQAIVSILSGYVKSFLKNEDFRATLRRKCFS---SLNFIEP--EDEGNSNE 248
++E A S++ V D+R T+++ C++ L + P E+ SNE
Sbjct: 1 MEEEKASAAQSLID-VVNEIAAISDYRITVKKLCYNLARRLKLLVPMFEEIRESNE 55
Score = 39 (18.8 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 378 NKPRKMKLLEKVYNEILDS 396
N R++KLL ++ EI +S
Sbjct: 35 NLARRLKLLVPMFEEIRES 53
Score = 38 (18.4 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 621 LRPSFEELHENDEYFDKGSFLT 642
L P FEE+ E++E + + T
Sbjct: 43 LVPMFEEIRESNEPISEDTLKT 64
Score = 37 (18.1 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 470 KPRVDAAEDDGEMENFDNYARSSGG-STVEKRTLTYSSEIVKC 511
K V +D+GE + +RS+G ST + + + +C
Sbjct: 220 KDFVQTEDDNGEEQKVGVNSRSNGQTSTAASQKIPVIPDDFRC 262
>TAIR|locus:2174814 [details] [associations]
symbol:CMPG2 ""CYS, MET, PRO, and GLY protein 2""
species:3702 "Arabidopsis thaliana" [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0010200 "response to chitin" evidence=IEP;RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0035556 "intracellular signal transduction" evidence=RCA]
[GO:0050832 "defense response to fungus" evidence=RCA]
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AB010076
HSSP:Q8VZ40 HOGENOM:HOG000238505 EMBL:BT023419 EMBL:BT025629
IPI:IPI00540273 RefSeq:NP_201271.1 UniGene:At.19743
UniGene:At.74061 ProteinModelPortal:Q9FLF4 SMR:Q9FLF4 STRING:Q9FLF4
PaxDb:Q9FLF4 PRIDE:Q9FLF4 EnsemblPlants:AT5G64660.1 GeneID:836587
KEGG:ath:AT5G64660 TAIR:At5g64660 eggNOG:NOG315056
InParanoid:Q9FLF4 OMA:CAGLLEF PhylomeDB:Q9FLF4
ProtClustDB:CLSN2684525 Genevestigator:Q9FLF4 Uniprot:Q9FLF4
Length = 420
Score = 123 (48.4 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 637 KGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPS 696
K ++P F CP++ + + PV+L +G T++ +I+ W++ GN TCP T + L
Sbjct: 3 KDDLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQNKD 62
Query: 697 LPLTNFILKRVIDGW 711
+ N L+R+I+ W
Sbjct: 63 F-IPNRTLQRLIEIW 76
Score = 63 (27.2 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 33/131 (25%), Positives = 59/131 (45%)
Query: 740 ETAIFILEQLLTVFSDQERITNAKHLISIGG---LQFLICRFESGKLEEKARVAALMCCC 796
+ A+ IL + + SD+ R +N LI G L ++ F++G +E K A L+
Sbjct: 167 QEAVKILSTIRSKVSDRRRFSN---LILTNGRDRLSVIVYLFKTGNVELKIDCAGLLEF- 222
Query: 797 IEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQN 856
I DA + +A + + EL+ K + ++ L+ L CL + N+
Sbjct: 223 IAVDAESKLLIAERDGL--ITELM--KSISKDSDLSLIESSLSCLIAISSPKRVKLNLLR 278
Query: 857 EELVNAMHVLL 867
E+L+ + LL
Sbjct: 279 EKLIGDVTKLL 289
>TAIR|locus:2032472 [details] [associations]
symbol:AT1G24330 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005871 "kinesin complex" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0019894
"kinesin binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=IDA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AC002396
HSSP:Q8VZ40 eggNOG:NOG251146 HOGENOM:HOG000082565
ProtClustDB:CLSN2679347 IPI:IPI00520534 PIR:T00664
RefSeq:NP_173843.2 UniGene:At.41444 ProteinModelPortal:O48700
SMR:O48700 PaxDb:O48700 PRIDE:O48700 EnsemblPlants:AT1G24330.1
GeneID:839049 KEGG:ath:AT1G24330 TAIR:At1g24330 InParanoid:O48700
OMA:RILMGAN PhylomeDB:O48700 Genevestigator:O48700 Uniprot:O48700
Length = 771
Score = 141 (54.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLT-NFI 703
P++ CP++ QL +PV + SGQT+E I++W G+ +CP T + L P L LT N+
Sbjct: 276 PEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQL--PHLSLTPNYC 333
Query: 704 LKRVIDGWKSEN 715
+K +I W +N
Sbjct: 334 VKGLIASWCEQN 345
>TAIR|locus:2090604 [details] [associations]
symbol:PUB25 "plant U-box 25" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0010200 "response to chitin"
evidence=IEP] InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AB025624
HSSP:Q8VZ40 HOGENOM:HOG000238505 EMBL:BT025982 EMBL:AY086503
EMBL:AK229923 IPI:IPI00525992 RefSeq:NP_566632.1 UniGene:At.5707
ProteinModelPortal:Q9LT79 SMR:Q9LT79 EnsemblPlants:AT3G19380.1
GeneID:821472 KEGG:ath:AT3G19380 TAIR:At3g19380 eggNOG:NOG262907
InParanoid:Q9LT79 OMA:ECTERAK PhylomeDB:Q9LT79
ProtClustDB:CLSN2682687 Genevestigator:Q9LT79 Uniprot:Q9LT79
Length = 421
Score = 137 (53.3 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 631 NDEYFDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRT-CPVTG 689
N E D G IP F CP++ +L ++PVT+ +GQT++ +I+ W+ GN T CPVT
Sbjct: 4 NIEPLDLG---IQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTR 60
Query: 690 KYLACPSLPLTNFILKRVIDGW 711
L+ +L + N L+R+I W
Sbjct: 61 APLSDFTL-IPNHTLRRLIQEW 81
>TAIR|locus:2098816 [details] [associations]
symbol:AT3G61390 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 Pfam:PF04564 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002686 GenomeReviews:BA000014_GR
EMBL:AL132962 EMBL:AL137898 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151
HSSP:Q8VZ40 EMBL:AK117154 EMBL:BT005367 IPI:IPI00525308 PIR:T47931
RefSeq:NP_191698.2 UniGene:At.34291 ProteinModelPortal:Q8GZ84
SMR:Q8GZ84 EnsemblPlants:AT3G61390.2 GeneID:825311
KEGG:ath:AT3G61390 TAIR:At3g61390 eggNOG:NOG327619
HOGENOM:HOG000115794 InParanoid:Q8GZ84 OMA:QITESYT PhylomeDB:Q8GZ84
ProtClustDB:CLSN2680474 Genevestigator:Q8GZ84 Uniprot:Q8GZ84
Length = 435
Score = 136 (52.9 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/67 (41%), Positives = 37/67 (55%)
Query: 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFIL 704
PQ FICP+T + E+P G T+E EAI W E+G+ T P+ K L SL + N L
Sbjct: 354 PQYFICPITHDIMEDPHVAADGFTYEGEAISRWFERGHETSPMINKRLPHTSL-VPNLAL 412
Query: 705 KRVIDGW 711
+ I W
Sbjct: 413 RSAIQEW 419
>TAIR|locus:2194564 [details] [associations]
symbol:PUB18 "plant U-box 18" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA;IDA] [GO:0010029 "regulation of seed
germination" evidence=IGI] InterPro:IPR001841 InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00184 SMART:SM00185 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0010029 GO:GO:0004842
EMBL:AC007067 GO:GO:0000151 HOGENOM:HOG000238412 HSSP:Q8VZ40
EMBL:AY075683 IPI:IPI00537444 PIR:B86239 RefSeq:NP_172526.1
UniGene:At.14982 ProteinModelPortal:Q9XIJ5 SMR:Q9XIJ5 PRIDE:Q9XIJ5
EnsemblPlants:AT1G10560.1 GeneID:837597 KEGG:ath:AT1G10560
TAIR:At1g10560 eggNOG:NOG251934 InParanoid:Q9XIJ5 OMA:EPSSKHR
PhylomeDB:Q9XIJ5 ProtClustDB:CLSN2679599 Genevestigator:Q9XIJ5
Uniprot:Q9XIJ5
Length = 697
Score = 136 (52.9 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 646 QDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILK 705
+D +CP++ ++ +PV +E+G T++ +I +W GN TCP+TGK L L + N ++
Sbjct: 290 EDLLCPISLEIMTDPVVIETGHTYDRSSITKWFGSGNITCPITGKILTSTEL-VDNVSVR 348
Query: 706 RVI 708
+VI
Sbjct: 349 QVI 351
Score = 50 (22.7 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 997 LGNRKRSFLETVSKILGSRNSDLVSV---CLTTVAWLSHALSAQPDAEFQLSAFSAVISQ 1053
+G +R L+ KIL S V+V C+ + L+ L+ D L S V+
Sbjct: 593 IGVIRRGGLKLAVKILSSSEDSPVAVKQHCVGLI--LNLCLNGGRDVVGVLVKNSLVMGS 650
Query: 1054 LKEILQNGEQPQQKVLASM 1072
L +L NGE K +++
Sbjct: 651 LYTVLSNGEYGGSKKASAL 669
>UNIPROTKB|Q6EUK7 [details] [associations]
symbol:PUB4 "U-box domain-containing protein 4"
species:39947 "Oryza sativa Japonica Group" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0016567
"protein ubiquitination" evidence=IDA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00185 SMART:SM00504 UniPathway:UPA00143
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 EMBL:AP008208
EMBL:CM000139 GO:GO:0000151 EMBL:AP004030 EMBL:AK062592
RefSeq:NP_001046379.1 UniGene:Os.5133 ProteinModelPortal:Q6EUK7
EnsemblPlants:LOC_Os02g13960.1 GeneID:4328818
KEGG:dosa:Os02t0234300-01 KEGG:osa:4328818 Gramene:Q6EUK7
eggNOG:NOG329430 HOGENOM:HOG000238412 OMA:ENRAYIA
ProtClustDB:CLSN2692596 Uniprot:Q6EUK7
Length = 728
Score = 146 (56.5 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 636 DKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACP 695
D SF S+P++F CP++ L +PV +GQT++ +I +WIE+G+ TCP +G+ LA
Sbjct: 291 DDTSF--SVPKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIEEGHSTCPNSGQTLADH 348
Query: 696 SLPLTNFILKRVIDGW 711
L + N L+ +I W
Sbjct: 349 RL-VPNRALRSLISQW 363
Score = 40 (19.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 910 VALEESLTDEKIQEKCCRALLIL 932
VAL +SL ++ + E+ AL +L
Sbjct: 570 VALIQSLRNDTVSEEAAGALALL 592
>ZFIN|ZDB-GENE-061110-97 [details] [associations]
symbol:zgc:154085 "zgc:154085" species:7955 "Danio
rerio" [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001660 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR011510 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04564 Pfam:PF07647 PROSITE:PS50082
PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320 SMART:SM00454
SMART:SM00504 ZFIN:ZDB-GENE-061110-97 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 Gene3D:3.30.40.10
InterPro:IPR013083 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004842 GeneTree:ENSGT00700000104017
GO:GO:0000151 EMBL:CABZ01026183 EMBL:CABZ01026184 EMBL:CABZ01048063
EMBL:CABZ01048064 EMBL:FP236277 IPI:IPI00993801
Ensembl:ENSDART00000128024 ArrayExpress:E7F9P4 Bgee:E7F9P4
Uniprot:E7F9P4
Length = 487
Score = 133 (51.9 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 33/120 (27%), Positives = 56/120 (46%)
Query: 594 AFEQQQTEGCTALTISSPPSTSEAPVNLRPSFEELHENDEYFDKGSFLTSIPQDFICPLT 653
AF+ +G L++S +S+ + ++ + E P +F+CP+T
Sbjct: 367 AFKSNNIDGEELLSLSKETLSSDLHIESLGLRSKVMKKIEELKMVPVYNGTPDEFLCPIT 426
Query: 654 GQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKS 713
++ ++PV G ++E EAI+ WI NRT P+T L +L N LK I W +
Sbjct: 427 REIMKDPVIAADGYSYEREAIEAWISTKNRTSPMTNLPLQT-TLLTPNRTLKMAIFRWST 485
>TAIR|locus:2102455 [details] [associations]
symbol:AT3G54790 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005871
"kinesin complex" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0019894 "kinesin binding"
evidence=IEA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AL138650 HOGENOM:HOG000238412
HSSP:Q8VZ40 EMBL:AK118613 IPI:IPI00538000 PIR:T47638
RefSeq:NP_191039.2 UniGene:At.1218 UniGene:At.48768
ProteinModelPortal:Q8GWV5 SMR:Q8GWV5 PaxDb:Q8GWV5 PRIDE:Q8GWV5
EnsemblPlants:AT3G54790.1 GeneID:824644 KEGG:ath:AT3G54790
TAIR:At3g54790 eggNOG:NOG259040 InParanoid:Q8GWV5 OMA:LSHFRNQ
PhylomeDB:Q8GWV5 ProtClustDB:CLSN2680413 Genevestigator:Q8GWV5
Uniprot:Q8GWV5
Length = 760
Score = 145 (56.1 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNF 702
SIP F CPL+ +L +PV + SGQTF+ +IK+W++ G CP T + L L + N+
Sbjct: 237 SIPPYFRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTRQVLTHQEL-IPNY 295
Query: 703 ILKRVIDGWKSENCMHL 719
+K +I W N ++L
Sbjct: 296 TVKAMIASWLEANRINL 312
Score = 40 (19.1 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 107 RRSVDVQ-ERRRSNAKSSETSQEN--EIVEV 134
+ S+ V+ ER RS A SE E +++E+
Sbjct: 186 KESITVEKERIRSQASKSEEDMEQTEQLIEL 216
>TAIR|locus:2039265 [details] [associations]
symbol:PUB23 "plant U-box 23" species:3702 "Arabidopsis
thaliana" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA;IGI;IDA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=IEA;IDA] [GO:0010200
"response to chitin" evidence=IEP;RCA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0002679 "respiratory burst involved in defense
response" evidence=IGI;RCA] [GO:0006952 "defense response"
evidence=IGI] [GO:0051865 "protein autoubiquitination"
evidence=IDA] [GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006612
"protein targeting to membrane" evidence=RCA] [GO:0006944 "cellular
membrane fusion" evidence=RCA] [GO:0009862 "systemic acquired
resistance, salicylic acid mediated signaling pathway"
evidence=RCA] [GO:0009867 "jasmonic acid mediated signaling
pathway" evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0035556
"intracellular signal transduction" evidence=RCA] [GO:0042742
"defense response to bacterium" evidence=RCA] [GO:0043069 "negative
regulation of programmed cell death" evidence=RCA] [GO:0050832
"defense response to fungus" evidence=RCA] InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 GO:GO:0005829 EMBL:CP002685
GenomeReviews:CT485783_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0009414 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 GO:GO:0051865
EMBL:AC007017 GO:GO:0002679 HSSP:Q8VZ40 HOGENOM:HOG000238505
eggNOG:NOG331697 ProtClustDB:CLSN2684770 EMBL:BT005829
EMBL:AK227343 IPI:IPI00548709 PIR:G84774 RefSeq:NP_181137.2
UniGene:At.43241 ProteinModelPortal:Q84TG3 SMR:Q84TG3 IntAct:Q84TG3
STRING:Q84TG3 PRIDE:Q84TG3 EnsemblPlants:AT2G35930.1 GeneID:818166
KEGG:ath:AT2G35930 TAIR:At2g35930 InParanoid:Q84TG3 OMA:RLHARAW
PhylomeDB:Q84TG3 Genevestigator:Q84TG3 Uniprot:Q84TG3
Length = 411
Score = 130 (50.8 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 57/229 (24%), Positives = 106/229 (46%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNR-TCPVTGKYLACPSLPLTNF 702
IP F+CP++ ++ ++PV + +G T++ ++I++W+ G + +CPVT + + L N
Sbjct: 12 IPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDADLT-PNH 70
Query: 703 ILKRVIDGWKSENCMHLLA--------FAFQIVEKSRMNESKNGDETAIFILEQLLTVFS 754
L+R+I W + N + + +EK + +S + E + L++L + S
Sbjct: 71 TLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKL-IRDSASSHENQVKCLKRLRQIVS 129
Query: 755 DQERITNAKHLISIGGLQFL--ICR--FESGKLEEKARVAALMCCCIEADAG--CRNQMA 808
E TN + L + G +FL I E+G L ++A E N+
Sbjct: 130 --ENATNKRCLEAAGVPEFLANIVSNDSENGSLTDEALNLLYHLETSETVLKNLLNNKKD 187
Query: 809 RNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNE 857
NI V SL +++ + R LLL +++ ++ TL V E
Sbjct: 188 NNI-VKSLTKIMQRGMYESRVYATLLLKNILEVADPMQSMTLKPEVFTE 235
>UNIPROTKB|Q0DR28 [details] [associations]
symbol:PUB57 "U-box domain-containing protein 57"
species:39947 "Oryza sativa Japonica Group" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0016567
"protein ubiquitination" evidence=IDA] InterPro:IPR000719
InterPro:IPR003613 InterPro:IPR008266 InterPro:IPR011009
Pfam:PF00069 Pfam:PF04564 PROSITE:PS00109 PROSITE:PS50011
SMART:SM00504 UniPathway:UPA00143 GO:GO:0005524 eggNOG:COG0515
SUPFAM:SSF56112 EMBL:DP000009 EMBL:AP008209 GO:GO:0004713
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:AC114983 EMBL:AK069682 RefSeq:NP_001050396.1 UniGene:Os.52876
EnsemblPlants:LOC_Os03g31070.1 GeneID:4333147
KEGG:dosa:Os03t0424200-01 KEGG:osa:4333147 Gramene:Q0DR28
OMA:IDINATF Uniprot:Q0DR28
Length = 518
Score = 131 (51.2 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 34/112 (30%), Positives = 56/112 (50%)
Query: 603 CTALTISSPPST-SEAPVNLRPSFEELHEND-EYFDKGSFLTSIPQDFICPLTGQLFEEP 660
CT +T P +E + + P + Y S +S+P FICP++ ++ ++P
Sbjct: 392 CTGMTRKKRPDLLNEVWIVIEPLTRKPPAATWPYLQSASGDSSVPAAFICPISMEIMKDP 451
Query: 661 VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLT-NFILKRVIDGW 711
G T+E EAI+ W ++G P+T LA P+L L N +L+ I G+
Sbjct: 452 QVASDGFTYEAEAIRCWFDRGISRSPMTN--LALPNLNLVPNRVLRSFIHGY 501
>TAIR|locus:2010424 [details] [associations]
symbol:PUB45 "plant U-box 45" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005871 "kinesin complex"
evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA;IDA] [GO:0019894 "kinesin binding" evidence=IEA]
[GO:0070696 "transmembrane receptor protein serine/threonine kinase
binding" evidence=IPI] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AC069471
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
HSSP:Q8VZ40 EMBL:AY094469 EMBL:BT002721 EMBL:AK230080
IPI:IPI00517206 PIR:D86404 RefSeq:NP_174112.1 UniGene:At.22435
ProteinModelPortal:Q9C7G1 SMR:Q9C7G1 PRIDE:Q9C7G1
EnsemblPlants:AT1G27910.1 GeneID:839684 KEGG:ath:AT1G27910
TAIR:At1g27910 eggNOG:NOG251146 HOGENOM:HOG000082565
InParanoid:Q9C7G1 OMA:SENMSIP PhylomeDB:Q9C7G1
ProtClustDB:CLSN2679347 Genevestigator:Q9C7G1 Uniprot:Q9C7G1
Length = 768
Score = 140 (54.3 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 637 KGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPS 696
+ S ++ P++ CP++ QL +PV + SGQT+E I++W G+ TCP T + L+
Sbjct: 272 RSSQMSVPPEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQLS--H 329
Query: 697 LPLT-NFILKRVIDGWKSEN 715
L LT N+ +K +I W +N
Sbjct: 330 LCLTPNYCVKALISSWCEQN 349
Score = 43 (20.2 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 1049 AVISQLKEILQNGEQPQQKVLASMSLL--NFSKI 1080
+++S L IL GE +Q+ S+ L+ N S+I
Sbjct: 633 SLVSNLCTILDTGEPNEQEQAVSLLLILCNHSEI 666
>TAIR|locus:2146198 [details] [associations]
symbol:AT5G18330 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AC051626 HOGENOM:HOG000238412
ProtClustDB:CLSN2686550 IPI:IPI00538442 RefSeq:NP_197334.1
UniGene:At.54898 ProteinModelPortal:Q3E9F6 SMR:Q3E9F6
EnsemblPlants:AT5G18330.1 GeneID:831951 KEGG:ath:AT5G18330
TAIR:At5g18330 eggNOG:NOG311548 InParanoid:Q3E9F6 OMA:HERTCPR
PhylomeDB:Q3E9F6 Genevestigator:Q3E9F6 Uniprot:Q3E9F6
Length = 445
Score = 129 (50.5 bits), Expect = 0.00012, P = 0.00012
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
+P++FIC L+ ++ EP+ + SGQTFE I EW++ RTCP T K + + N +
Sbjct: 65 VPKEFICTLSNKIMIEPMLIASGQTFEKSYILEWLKH-ERTCPRT-KQVLYHRFMIPNHL 122
Query: 704 LKRVIDGW 711
+ VI W
Sbjct: 123 INEVIKEW 130
>TAIR|locus:2079964 [details] [associations]
symbol:PUB22 "plant U-box 22" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA;IGI;IDA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=IEA;IDA] [GO:0010200
"response to chitin" evidence=IEP;RCA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0002679 "respiratory burst involved in defense
response" evidence=IGI;RCA] [GO:0006952 "defense response"
evidence=IGI] [GO:0051865 "protein autoubiquitination"
evidence=IDA] [GO:0006865 "amino acid transport" evidence=RCA]
[GO:0015824 "proline transport" evidence=RCA] InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 SMART:SM00504 UniPathway:UPA00143
GO:GO:0005829 EMBL:CP002686 GenomeReviews:BA000014_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0009414
GO:GO:0010200 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000151 GO:GO:0051865 EMBL:AL050300 GO:GO:0002679 HSSP:Q8VZ40
HOGENOM:HOG000238505 EMBL:BT015763 EMBL:BT020203 EMBL:AK228993
IPI:IPI00521627 PIR:T08454 RefSeq:NP_190813.1 UniGene:At.35294
ProteinModelPortal:Q9SVC6 SMR:Q9SVC6 STRING:Q9SVC6
EnsemblPlants:AT3G52450.1 GeneID:824410 KEGG:ath:AT3G52450
TAIR:At3g52450 eggNOG:NOG331697 InParanoid:Q9SVC6 OMA:RNSEMAM
PhylomeDB:Q9SVC6 ProtClustDB:CLSN2684770 Genevestigator:Q9SVC6
Uniprot:Q9SVC6
Length = 435
Score = 127 (49.8 bits), Expect = 0.00018, P = 0.00018
Identities = 56/292 (19%), Positives = 123/292 (42%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNR-TCPVTGKYLACPSLPLTNF 702
IP F+CP++ + ++PV + +G T++ E+I++W+ G + +CPVT + + L N
Sbjct: 7 IPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVITETDLT-PNH 65
Query: 703 ILKRVIDGWKSENCMHLLAFAFQIVEKSRMNESKNGDETAIFILEQLLTVFSDQERITNA 762
L+R+I W + N ++ + + + K+ +E+L+ S +
Sbjct: 66 TLRRLIQSWCTLNA----SYGIERIPTPKPPICKSE-------IEKLIKE-SSSSHLNQV 113
Query: 763 KHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHS 822
K L + Q + + + E A V + + N + +++ +L ++ S
Sbjct: 114 KCLKRLR--QIVSENTTNKRCLEAAEVPEFLANIVSNSVDTYNSPSSSLSSSNLNDMCQS 171
Query: 823 KQVKPRTNTVLLLID-LICLSRRRDVS-TLLRNV-QNEELVNAMHVLLLYLQRSPPEQRP 879
++ R ++ L+D + + D S T L+++ N++ N + L +QR E R
Sbjct: 172 NMLENRFDSSRSLMDEALSVLYHLDTSETALKSLLNNKKGTNLVKTLTKIMQRGIYESRA 231
Query: 880 XXXXXXXXXXXXVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLI 931
+P + + + L + ++ K + L+I
Sbjct: 232 YAALLLKKLLEVADPMQIILLERELFGEVIQILHDQIS-HKATRSAMQILVI 282
>TAIR|locus:2152049 [details] [associations]
symbol:AT5G65920 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564
PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR EMBL:AL021684 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AB018108
HSSP:Q8VZ40 HOGENOM:HOG000077474 ProtClustDB:CLSN2686657
EMBL:AY062476 EMBL:AY093259 IPI:IPI00534056 PIR:T05882
RefSeq:NP_201393.1 UniGene:At.27331 UniGene:At.74058
ProteinModelPortal:Q9FHN9 SMR:Q9FHN9 EnsemblPlants:AT5G65920.1
GeneID:836721 KEGG:ath:AT5G65920 TAIR:At5g65920 eggNOG:NOG268350
InParanoid:Q9FHN9 OMA:CKLASEE PhylomeDB:Q9FHN9
Genevestigator:Q9FHN9 Uniprot:Q9FHN9
Length = 444
Score = 127 (49.8 bits), Expect = 0.00019, P = 0.00019
Identities = 54/207 (26%), Positives = 97/207 (46%)
Query: 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLT 700
L IP FICP++ + ++PVTL +GQT+E I +W G+ TCP T + L L
Sbjct: 57 LPEIPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQEL-WDDLVTP 115
Query: 701 NFILKRVIDGWKSENCMHLLAFAFQIVEKSRMNE-----SKNGDETAIFILEQLLTVFSD 755
N L ++I W S+ + L+ + V+ R E K + + L +L V
Sbjct: 116 NKTLHQLIYTWFSQKYV-LMKKRSEDVQ-GRAIEILGTLRKAKGKAKVHALSELKQVVM- 172
Query: 756 QERITNAKHLISIGG---LQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNIN 812
I K ++ GG + L+ F S + +A +A L+ +E D+ + + +
Sbjct: 173 AHAIAK-KTVVDEGGVFVISSLLSPFTSHAVGSEA-IAILVN--LELDSDSKAGLMQPAR 228
Query: 813 VYSLLELLHSKQVKPRTNTVLLLIDLI 839
V ++++L+ ++ + N L+ L+
Sbjct: 229 VSLMVDMLNDGSIETKINCARLIGRLV 255
>TAIR|locus:2093974 [details] [associations]
symbol:PUB29 "plant U-box 29" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA;IDA] [GO:0010200 "response to chitin"
evidence=IEP] [GO:0070696 "transmembrane receptor protein
serine/threonine kinase binding" evidence=IPI] [GO:0009506
"plasmodesma" evidence=IDA] InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143
GO:GO:0009506 EMBL:CP002686 GenomeReviews:BA000014_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0010200
EMBL:AB026654 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000151 HSSP:Q8VZ40 HOGENOM:HOG000238505
ProtClustDB:CLSN2684525 EMBL:AK117976 EMBL:BT005359 IPI:IPI00545400
RefSeq:NP_188501.1 UniGene:At.38506 ProteinModelPortal:Q9LSA6
SMR:Q9LSA6 IntAct:Q9LSA6 ProMEX:Q9LSA6 EnsemblPlants:AT3G18710.1
GeneID:821402 KEGG:ath:AT3G18710 TAIR:At3g18710 eggNOG:NOG292721
InParanoid:Q9LSA6 OMA:YITVPSF PhylomeDB:Q9LSA6
Genevestigator:Q9LSA6 Uniprot:Q9LSA6
Length = 415
Score = 125 (49.1 bits), Expect = 0.00028, P = 0.00028
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 639 SFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLP 698
+++T +P F CP++ + PV+L +G T++ +I+ W++ GN TCP T + L
Sbjct: 8 TYIT-VPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLLKTKDF- 65
Query: 699 LTNFILKRVIDGW 711
+ N L+R+I+ W
Sbjct: 66 VPNLTLQRLINIW 78
>TAIR|locus:2045334 [details] [associations]
symbol:PUB4 "plant U-box 4" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005871 "kinesin complex"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0019894 "kinesin binding" evidence=IEA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 EMBL:CP002685 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 IPI:IPI00532127
RefSeq:NP_179895.6 UniGene:At.39339 ProteinModelPortal:F4ILG6
SMR:F4ILG6 PRIDE:F4ILG6 EnsemblPlants:AT2G23140.1 GeneID:816846
KEGG:ath:AT2G23140 OMA:WRRPSER Uniprot:F4ILG6
Length = 829
Score = 139 (54.0 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNF 702
+I DF CPL+ ++ +PV + SGQT+E IK WI+ G + CP T + L +L + N+
Sbjct: 232 AILADFFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTL-IPNY 290
Query: 703 ILKRVIDGWKSENCMHL 719
+K +I W N + L
Sbjct: 291 TVKALIANWCETNDVKL 307
Score = 40 (19.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 14/65 (21%), Positives = 30/65 (46%)
Query: 774 LICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVL 833
L+ +S L+ + + A + + + R + + + L+ELL+S + N V
Sbjct: 549 LVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVT 608
Query: 834 LLIDL 838
L++L
Sbjct: 609 ALLNL 613
>TAIR|locus:2008813 [details] [associations]
symbol:AT1G67530 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005871 "kinesin complex" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0019894
"kinesin binding" evidence=IEA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AC011020 HSSP:Q8VZ40
HOGENOM:HOG000082565 ProtClustDB:CLSN2679347 EMBL:AK117197
EMBL:BT006484 IPI:IPI00538541 PIR:G96698 RefSeq:NP_001154455.1
RefSeq:NP_176920.1 UniGene:At.35639 UniGene:At.66850
ProteinModelPortal:Q9CAG5 SMR:Q9CAG5 IntAct:Q9CAG5 PaxDb:Q9CAG5
PRIDE:Q9CAG5 EnsemblPlants:AT1G67530.1 EnsemblPlants:AT1G67530.2
GeneID:843074 KEGG:ath:AT1G67530 TAIR:At1g67530 eggNOG:NOG240771
InParanoid:Q9CAG5 OMA:GELENTR PhylomeDB:Q9CAG5
Genevestigator:Q9CAG5 Uniprot:Q9CAG5
Length = 782
Score = 135 (52.6 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLT-NFI 703
P++ CP++ QL +PV + SGQT+E I++W G+ TCP T + L P + LT N
Sbjct: 273 PEELRCPISLQLMCDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQQL--PHISLTPNNC 330
Query: 704 LKRVIDGWKSEN 715
+K +I W +N
Sbjct: 331 VKGLIASWCEQN 342
Score = 49 (22.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 27/113 (23%), Positives = 50/113 (44%)
Query: 1004 FLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQ 1063
F+E + + LGS D + + A L+ + +L S VI L++++ + E
Sbjct: 467 FVEALLRFLGSAVDDNNAAAQDSGAMALFNLAVNNNRNKELMLTSGVIRLLEKMISSAES 526
Query: 1064 PQQKVLASMSLLNFSKIPECGAVLKTIAAEIRIPLQSLTEVTWTTQELCAIIA 1116
A+ LN S + E +V+ + A + +Q L + T +L A+ A
Sbjct: 527 HGS---ATALYLNLSCLDEAKSVIGSSQA-VPFLVQLLQKEIETQCKLDALHA 575
Score = 39 (18.8 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 779 ESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHS 822
E G LE+K +V + ++ D R M N V +LL L S
Sbjct: 435 EEG-LEKKCKVVEKIRLLLKDDEEARIFMGANGFVEALLRFLGS 477
>TAIR|locus:2151641 [details] [associations]
symbol:AT5G61560 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IEA] [GO:0004713
"protein tyrosine kinase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0016301
"kinase activity" evidence=ISS] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0002237 "response to molecule of
bacterial origin" evidence=RCA] [GO:0002238 "response to molecule
of fungal origin" evidence=RCA] [GO:0002679 "respiratory burst
involved in defense response" evidence=RCA] [GO:0006499 "N-terminal
protein myristoylation" evidence=RCA] [GO:0006865 "amino acid
transport" evidence=RCA] [GO:0009581 "detection of external
stimulus" evidence=RCA] [GO:0009595 "detection of biotic stimulus"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0030968 "endoplasmic reticulum unfolded protein response"
evidence=RCA] InterPro:IPR000719 InterPro:IPR001245
InterPro:IPR003613 InterPro:IPR006016 InterPro:IPR008271
InterPro:IPR011009 InterPro:IPR017441 Pfam:PF00582 Pfam:PF04564
Pfam:PF07714 PROSITE:PS00107 PROSITE:PS00108 PROSITE:PS50011
SMART:SM00504 UniPathway:UPA00143 GO:GO:0005886 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009507 GO:GO:0006950
eggNOG:COG0515 SUPFAM:SSF56112 GO:GO:0004674 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0000151 EMBL:AB012239 HSSP:Q8VZ40
HOGENOM:HOG000237993 EMBL:AK228747 IPI:IPI00543972 IPI:IPI00886514
RefSeq:NP_200964.2 UniGene:At.29098 ProteinModelPortal:Q9FKG5
SMR:Q9FKG5 STRING:Q9FKG5 PaxDb:Q9FKG5 PRIDE:Q9FKG5
EnsemblPlants:AT5G61560.1 GeneID:836277 KEGG:ath:AT5G61560
GeneFarm:2020 TAIR:At5g61560 InParanoid:Q9FKG5 OMA:CIERETE
PhylomeDB:Q9FKG5 ProtClustDB:CLSN2918426 Genevestigator:Q9FKG5
Uniprot:Q9FKG5
Length = 796
Score = 116 (45.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFIL 704
P F CP+T + E P G T+E AIKEW+++ +++ P+T SL L N L
Sbjct: 726 PTHFYCPITKDVMENPCVASDGYTYEKRAIKEWLQKNHKS-PMTDLPFPSDSL-LPNHSL 783
Query: 705 KRVIDGWKSE 714
I W+S+
Sbjct: 784 LSAIKEWRSQ 793
Score = 63 (27.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 29/143 (20%), Positives = 58/143 (40%)
Query: 2 ASLEELLLADGFKGRRSSVTSSRPSFREEAMSMPVYPFGDKNKAASSSSSRIKTERARSD 61
+ +EE + + SS + F E + + + K A + S I + D
Sbjct: 272 SQMEEASSSSTYSDPTSSSSQIHKDFELEKLKIELRHI--KGMYAVAQSEVIDASKKMQD 329
Query: 62 LSRYTLKSDSPRISNLSGRRPR-DSLVRREKVDSGSMKEHRERLAGRRSVDVQERRRSNA 120
L++ ++ R+ NL+ R D +V E+ + E + + +ER + A
Sbjct: 330 LNQRR-SEEATRLKNLTIREEEADEVVEMERERQEDAENEAELVRECIERETEERLEAEA 388
Query: 121 KSSETSQENEIVE--VSGEESQR 141
++ E +E + +E + G QR
Sbjct: 389 RAEEVRKEKQRLEDALEGGPLQR 411
>TAIR|locus:2117343 [details] [associations]
symbol:AT4G25160 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0016301
"kinase activity" evidence=ISS] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0002238 "response
to molecule of fungal origin" evidence=RCA] InterPro:IPR000719
InterPro:IPR001245 InterPro:IPR003613 InterPro:IPR006016
InterPro:IPR008271 InterPro:IPR011009 InterPro:IPR017441
Pfam:PF00582 Pfam:PF04564 Pfam:PF07714 PROSITE:PS00107
PROSITE:PS00108 PROSITE:PS50011 SMART:SM00504 UniPathway:UPA00143
GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006950
eggNOG:COG0515 SUPFAM:SSF56112 GO:GO:0004674 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:AL161562 GO:GO:0004842 EMBL:AL035523
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151 EMBL:AL035396
HSSP:Q8VZ40 HOGENOM:HOG000237993 EMBL:BX828107 IPI:IPI00540343
PIR:T05537 RefSeq:NP_194246.2 UniGene:At.32287
ProteinModelPortal:Q9SW11 SMR:Q9SW11 IntAct:Q9SW11 PaxDb:Q9SW11
PRIDE:Q9SW11 EnsemblPlants:AT4G25160.1 GeneID:828619
KEGG:ath:AT4G25160 GeneFarm:2015 TAIR:At4g25160 InParanoid:Q9SW11
OMA:FQQELEI PhylomeDB:Q9SW11 ProtClustDB:CLSN2918598
Genevestigator:Q9SW11 Uniprot:Q9SW11
Length = 835
Score = 124 (48.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 37/114 (32%), Positives = 53/114 (46%)
Query: 603 CTALTISSPPSTSEAPVNLRPSFEELHENDEYFDKGSFL---TSIPQDFICPLTGQLFEE 659
CT L P + + P+ E L + E + SF T P FICPL + E
Sbjct: 726 CTELRGKDRPDLKD---QILPALENLKKVAEKA-RNSFSGVSTQPPTHFICPLLKDVMNE 781
Query: 660 PVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKS 713
P G T++ AI+EW+++ N T P+T L +L L N+ L I W+S
Sbjct: 782 PCVAADGYTYDRHAIEEWLKEHN-TSPMTDSPLHSKNL-LPNYTLYTAIMEWRS 833
Score = 55 (24.4 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 71 SPRISNLSGRRPRDSLVRREKVDSGSMKEHRERLAGRRSVDVQERRRSNAKSSETSQENE 130
S ++ L+ RR +++ K++ +KE+ R + E+ R +A+S E E
Sbjct: 378 SRKLGELNQRRLEEAI----KLEELKLKEYEARELAEKEKQNFEKARRDAESMRERAERE 433
Query: 131 IVEVSGEESQRVSINLDTR 149
I + E++R S DT+
Sbjct: 434 IAQ--RREAERKSAR-DTK 449
Score = 54 (24.1 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 86 LVRREKVDSGSMKEHRERLAGRRSVDVQERRRSNAKSSETSQENEIVE 133
L +EK + + E + R ++ +RR + KS+ ++E E +E
Sbjct: 408 LAEKEKQNFEKARRDAESMRERAEREIAQRREAERKSARDTKEKEKLE 455
>WB|WBGene00010662 [details] [associations]
symbol:K08E3.2 species:6239 "Caenorhabditis elegans"
[GO:0005198 "structural molecule activity" evidence=IEA]
InterPro:IPR000535 Pfam:PF00635 PROSITE:PS50202 GO:GO:0005856
GO:GO:0005198 Gene3D:2.60.40.360 InterPro:IPR008962 SUPFAM:SSF49354
GeneTree:ENSGT00690000102102 EMBL:Z81568 eggNOG:NOG297942
PIR:T23451 RefSeq:NP_499837.1 UniGene:Cel.27258
ProteinModelPortal:Q9XUT1 SMR:Q9XUT1 EnsemblMetazoa:K08E3.2
GeneID:187158 KEGG:cel:CELE_K08E3.2 UCSC:K08E3.2 CTD:187158
WormBase:K08E3.2 InParanoid:Q9XUT1 OMA:GKEIEMA NextBio:934308
Uniprot:Q9XUT1
Length = 276
Score = 121 (47.7 bits), Expect = 0.00034, P = 0.00034
Identities = 47/202 (23%), Positives = 95/202 (47%)
Query: 43 NKAASSSSSRIKTERARSDLSRYTL-KSDSPRISNLSGRRPRDSLVRREKVDSGSMKEHR 101
+K A+ S + IK E+ L+ + KS +P +L+ + D ++EK G KE
Sbjct: 23 SKKAAPSVAPIKMEKHAESLTATPVSKSPAPVSKSLALEKDEDVEKKKEK---GEEKEEE 79
Query: 102 ERLAGRRSVDVQERRRSNAKSSETSQENEIVEVSGEESQRVSINLDTRHSNVDNRKSMKE 161
E+ G + + +E ++ ++K + +++E + + EE + + ++ N D RK K+
Sbjct: 80 EK--GEKKKEDKEEKKDDSKEDKKDEDHE-KKKTAEEKENNEKKDENKNKNKDERKDEKK 136
Query: 162 NEPGNDRYNRSSMSRKSIKENYRKHESVLAPASEPALDEVAVQAIVSILSGYVKSFLKNE 221
+E +D + + +K K++ +K + E+ + ++ K LKN
Sbjct: 137 DEKKDDEKDERNDEKKEEKKDDQKDDKKAKSMISVDAPELIFERTIT---SQKKLLLKNL 193
Query: 222 DFRATLRR-KCFSSLN--FIEP 240
+ + + KC SS+N FI P
Sbjct: 194 TAKKVMFKIKC-SSVNVYFINP 214
>TAIR|locus:2198190 [details] [associations]
symbol:PUB54 "plant U-box 54" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] InterPro:IPR003613 InterPro:IPR006016
Pfam:PF00582 Pfam:PF04564 SMART:SM00504 UniPathway:UPA00143
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006950
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC009273 GO:GO:0004842
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151 HSSP:Q8VZ40
IPI:IPI00532514 PIR:F86147 RefSeq:NP_171674.2 UniGene:At.42636
ProteinModelPortal:Q9LQ92 SMR:Q9LQ92 EnsemblPlants:AT1G01680.1
GeneID:839251 KEGG:ath:AT1G01680 TAIR:At1g01680 eggNOG:NOG331289
HOGENOM:HOG000115795 InParanoid:Q9LQ92 OMA:RDICINK PhylomeDB:Q9LQ92
ProtClustDB:CLSN2917980 Genevestigator:Q9LQ92 Uniprot:Q9LQ92
Length = 308
Score = 120 (47.3 bits), Expect = 0.00057, P = 0.00057
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 646 QDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILK 705
+DF CP++ ++ +P G T+E E ++W+ G RT P T K L +L + N L+
Sbjct: 235 EDFKCPISMEIMRDPHVAADGFTYEAEEFRKWLRSGGRTSPKTNKPLENHNL-VPNHTLR 293
Query: 706 RVIDGWKSEN 715
+I W +N
Sbjct: 294 IIIKDWLEKN 303
>TAIR|locus:2146183 [details] [associations]
symbol:AT5G18320 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564
PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AC051626 HOGENOM:HOG000238412
IPI:IPI00534776 RefSeq:NP_197333.2 UniGene:At.54897
ProteinModelPortal:Q3E9F7 SMR:Q3E9F7 PaxDb:Q3E9F7 PRIDE:Q3E9F7
EnsemblPlants:AT5G18320.1 GeneID:831950 KEGG:ath:AT5G18320
TAIR:At5g18320 eggNOG:NOG312656 InParanoid:Q3E9F7 OMA:NTIMIEP
PhylomeDB:Q3E9F7 ProtClustDB:CLSN2686550 Genevestigator:Q3E9F7
Uniprot:Q3E9F7
Length = 458
Score = 127 (49.8 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
+P++FIC L+ + EPV + SGQT+E I EW++ RTCP T + L+ L + N +
Sbjct: 72 VPKEFICTLSNTIMIEPVIIASGQTYEKRYITEWLKH-ERTCPKTKQVLS-HRLWIPNHL 129
Query: 704 LKRVIDGW 711
+ +I W
Sbjct: 130 ISDLITQW 137
Score = 41 (19.5 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 370 ADSLADESNKPRKMKLLEKVYNEILDSG 397
ADS E+N + L+KV EIL+ G
Sbjct: 2 ADST--ETNADTLRRELQKVLTEILNDG 27
>TAIR|locus:2050659 [details] [associations]
symbol:AT2G45920 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 Pfam:PF04564 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002685 GenomeReviews:CT485783_GR
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151 EMBL:AC004665
HSSP:Q8VZ40 HOGENOM:HOG000115794 ProtClustDB:CLSN2680474
EMBL:AK175182 EMBL:BT015764 EMBL:BT020181 IPI:IPI00546399
PIR:T02455 RefSeq:NP_182116.2 UniGene:At.22480
ProteinModelPortal:Q683D5 SMR:Q683D5 IntAct:Q683D5
EnsemblPlants:AT2G45920.1 GeneID:819200 KEGG:ath:AT2G45920
TAIR:At2g45920 eggNOG:NOG265582 InParanoid:Q683D5 OMA:ENRITES
PhylomeDB:Q683D5 Genevestigator:Q683D5 Uniprot:Q683D5
Length = 400
Score = 120 (47.3 bits), Expect = 0.00093, P = 0.00093
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFIL 704
PQ FICP++ ++ ++P G T+E EAI W++ G+ T P+T L L + N L
Sbjct: 326 PQYFICPISLEVMKDPQLAADGFTYEAEAISTWLQGGHETSPMTNTKLHHTKL-VPNLAL 384
Query: 705 KRVIDGW 711
+ I W
Sbjct: 385 RSAIQEW 391
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.129 0.366 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1122 1083 0.00086 123 3 11 23 0.43 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 50
No. of states in DFA: 625 (66 KB)
Total size of DFA: 468 KB (2220 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 113.55u 0.11s 113.66t Elapsed: 00:00:05
Total cpu time: 113.55u 0.11s 113.66t Elapsed: 00:00:05
Start: Fri May 10 15:14:51 2013 End: Fri May 10 15:14:56 2013