BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041480
(1122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
P+ F CP++ +L ++PV + +GQT+E +I++W++ G++TCP + + L L N++
Sbjct: 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL-TPNYV 63
Query: 704 LKRVIDGWKSEN 715
LK +I W N
Sbjct: 64 LKSLIALWCESN 75
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 36.6 bits (83), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 644 IPQDFIC-PLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNF 702
IP D++C ++ +L EP SG T++ + I+E +++ PVT L L + N
Sbjct: 205 IP-DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL-IPNL 262
Query: 703 ILKRVIDGWKSEN 715
+K VID + SEN
Sbjct: 263 AMKEVIDAFISEN 275
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 644 IPQDFIC-PLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNF 702
IP D++C ++ +L EP SG T++ + I+E +++ PVT L L + N
Sbjct: 103 IP-DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL-IPNL 160
Query: 703 ILKRVIDGWKSEN 715
+K VID + EN
Sbjct: 161 AMKEVIDAFIQEN 173
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 647 DFIC-PLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILK 705
D++C ++ +L EP SG T++ + I+E +++ PVT L L + N +K
Sbjct: 4 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL-IPNLAMK 62
Query: 706 RVIDGWKSEN 715
VID + SEN
Sbjct: 63 EVIDAFISEN 72
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 33.5 bits (75), Expect = 0.72, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 638 GSFLTSIPQDFIC-PLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPS 696
GS IP D++C ++ +L EP SG T++ + I+E +++ PVT L
Sbjct: 4 GSKKREIP-DYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 62
Query: 697 LPLTNFILKRVIDGWKSEN 715
L + N +K VID + EN
Sbjct: 63 L-IPNLAMKEVIDAFIQEN 80
>pdb|4E5E|A Chain A, Crystal Structure Of Avian Influenza Virus Pan Apo
pdb|4E5E|B Chain B, Crystal Structure Of Avian Influenza Virus Pan Apo
pdb|4E5E|C Chain C, Crystal Structure Of Avian Influenza Virus Pan Apo
pdb|4E5E|D Chain D, Crystal Structure Of Avian Influenza Virus Pan Apo
pdb|4E5F|A Chain A, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 1
pdb|4E5F|B Chain B, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 1
pdb|4E5F|C Chain C, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 1
pdb|4E5F|D Chain D, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 1
pdb|4E5G|A Chain A, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 2
pdb|4E5G|B Chain B, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 2
pdb|4E5G|C Chain C, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 2
pdb|4E5G|D Chain D, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 2
pdb|4E5H|A Chain A, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 3
pdb|4E5H|B Chain B, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 3
pdb|4E5H|C Chain C, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 3
pdb|4E5H|D Chain D, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 3
pdb|4E5I|A Chain A, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 4
pdb|4E5I|B Chain B, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 4
pdb|4E5I|C Chain C, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 4
pdb|4E5I|D Chain D, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 4
pdb|4E5J|A Chain A, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 5
pdb|4E5J|B Chain B, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 5
pdb|4E5J|C Chain C, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 5
pdb|4E5J|D Chain D, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 5
pdb|4E5L|A Chain A, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 6
pdb|4E5L|B Chain B, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 6
pdb|4E5L|C Chain C, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 6
pdb|4E5L|D Chain D, Crystal Structure Of Avian Influenza Virus Pan Bound To
Compound 6
Length = 187
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 284 MITGMSANDLKD-GSTSGVPNSKLSA-CAHLYLSVIYK----------IQKKDRVSAKHL 331
MI ++ +K+ G + +K +A C HL + +Y I+ +DR A +
Sbjct: 12 MIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDGGSKHRFEIIEGRDRTMAWTV 71
Query: 332 LQVFCDSPFMARTTLLPELWDY 353
+ C++ + + LP+L+DY
Sbjct: 72 VNSICNTTGVEKPKFLPDLYDY 93
>pdb|4AWK|A Chain A, Influenza Strain Ph1n1 2009 Polymerase Subunit Pa
Endonuclease In Complex With Diketo Compound 1
Length = 183
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 284 MITGMSANDLKD-GSTSGVPNSKLSA-CAHLYLSVIYK--------IQKKDRVSAKHLLQ 333
MI ++ +K+ G + +K +A C HL + +Y I+ +DR+ A ++
Sbjct: 18 MIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDFGHRFEIIEGRDRIMAWTVVN 77
Query: 334 VFCDSPFMARTTLLPELWDY 353
C++ + + LP+L+DY
Sbjct: 78 SICNTTGVEKPKFLPDLYDY 97
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 640 FLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACP 695
F+ + ++ ICP+ + ++PVT++ G F + I + G +C + CP
Sbjct: 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQI---GETSC----GFFKCP 61
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 640 FLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACP 695
F+ + ++ ICP+ + ++PVT++ G F + I + G +C + CP
Sbjct: 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQI---GETSC----GFFKCP 61
>pdb|1ZB6|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Gspp And 1,6-Dihydroxynaphtalene
pdb|1ZCW|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Gpp
pdb|1ZDW|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Gspp And Flaviolin
pdb|1ZDY|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Taps
Length = 307
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 471 PRVDAAEDDGEMENFDNYARSSGGSTV-EKRTLTYS 505
P + + D+G++E F NYA + + V EKRTL Y
Sbjct: 238 PTLVPSSDEGDIEKFHNYATKAPYAYVGEKRTLVYG 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,712,093
Number of Sequences: 62578
Number of extensions: 1169165
Number of successful extensions: 2046
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2042
Number of HSP's gapped (non-prelim): 11
length of query: 1122
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1013
effective length of database: 8,152,335
effective search space: 8258315355
effective search space used: 8258315355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)