BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041480
(1122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C6L7U1|LIN1_LOTJA Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus
GN=CERBERUS PE=2 SV=2
Length = 1485
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 194/380 (51%), Gaps = 11/380 (2%)
Query: 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEA 799
+ AI ILEQ L + R NA +IS G+ L+ E ++E + V +++ CC++A
Sbjct: 809 DAAIAILEQTLMGGDEYSRSLNASSVISANGIPTLVKYLE--RMEGRRSVVSVLLCCMQA 866
Query: 800 DAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEEL 859
+ C+N +A I + +LEL HS R V L +L+ L+RR + +L +++E
Sbjct: 867 EKSCKNLIANRIELSPVLELFHSGNDSVRGTCVEFLSELVQLNRRTSCNQILHTIKDEGA 926
Query: 860 VNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDE 919
+ MH L+YLQ +P E + + LLL LDLL EPRK SIYRE AV+ + AL +
Sbjct: 927 FSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQK-DFS 985
Query: 920 KIQEKCCRALLILGGRFSFSREVANESWILKPAGF----NDRCEGNSLDNDENDLPVDDS 975
Q K ALL L G S S + E+W+LK AGF N + L +NDL
Sbjct: 986 NTQMKALDALLFLIGHISSSGKSYTEAWLLKIAGFDQPYNALMKVEQLGQHDNDL----I 1041
Query: 976 TPLDDEEQASEEWLRKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALS 1035
++DE+ A W +++++ L + S + + + L S + + CL WL+H L
Sbjct: 1042 ETMEDEKNALNSWQKRIASVLCNHENGSIFKALEECLKSNSLKMAKSCLVLATWLTHMLY 1101
Query: 1036 AQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIPECGAVLKTIAAEIR 1095
PD + A +++ ++ +LQ+ + ++K+LA+++L F P L+ A I
Sbjct: 1102 TLPDTGVRDVARKSLLEEVINVLQSSKNLEEKILATLALKTFISDPSTHEALRVYAKSIY 1161
Query: 1096 IPLQSLTEVTWTTQELCAII 1115
L+ L + + ++ +I
Sbjct: 1162 RTLRRLKKYSVVAVDIMKVI 1181
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 635 FDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694
+K S + P+DF+CP+TGQ+F +PVTLE+GQT+E +AI+EW+ GN TCP+T + L+
Sbjct: 502 LEKLSMGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSA 561
Query: 695 PSLPLTNFILKRVIDGWKSEN 715
LP TN++LKR+I WK +N
Sbjct: 562 SILPKTNYVLKRLITSWKEQN 582
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 90/416 (21%), Positives = 166/416 (39%), Gaps = 73/416 (17%)
Query: 206 IVSILSGYVKSFLK----NEDFRATLRRKCFSSL----NFIEPEDEGNSNESKVIASLEQ 257
IV L+ V SF++ N++ R + +C L + + E ++ V+A+L+
Sbjct: 14 IVRFLTTTVDSFIQDRLINKEQRTQHKEQCAERLAAEDGSGDKDTEVEYSDQAVLANLDW 73
Query: 258 AIETVQRAAEESASSKELKKASLQLSMITGMSANDLKDGSTSGVPNSKLSACAHLYLSVI 317
IE ++ A +L + M+ + + K +GVPNS LSA AHL LS +
Sbjct: 74 GIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQ-KIAGVPNSYLSAWAHLNLSYL 132
Query: 318 YKIQKKDRVSAKHLLQVFCDSPFMARTTLLPELWDYLISPHLAHLKAWYKQEADSLADE- 376
+K++ + H L++F PF R PELW L PH++ + WY +E L E
Sbjct: 133 WKLRNNVQNCISHALEMFIVDPFFTRIDFAPELWKSLFLPHMSSIVGWYSEERHRLMMEV 192
Query: 377 -----------------------SNKPR---KMKLLEKVYNEILDSGTYQFAVYYKDWLT 410
+ +P K++ LE++Y E LD T +A YY D +
Sbjct: 193 IPDSADLSFTADFEQFFNESLVLTMRPHQLEKLQKLEQLYGESLDENTKLYAKYYNDCMN 252
Query: 411 EGIED-----PSVPTIQIPSLSVQRHQRK-GSFGNSSEVASPAAAFSPQPTVSKKLYDAV 464
P +P + P + R F + +A FS P L + +
Sbjct: 253 SDSSSSKKAVPMLPIAEPPMTPLHELSRTIPDFVKFGPILPKSAGFSLAPRSKDVLNETI 312
Query: 465 FERASKPRVDAAEDDGEMENFDNYARSSGGSTVEKRTLTYSSEIVKCTYQDTEDDSPKIA 524
E + + EK ++ + + + ++ EDDS
Sbjct: 313 RENVTSSNLKE----------------------EKLSIWGAKDTI---IEENEDDSDSEL 347
Query: 525 QDDLFHPEDELLLAAEEGWRLPGVKYPAERNINSNINICCTSKKIQTIKLYTPPDT 580
+++ +D+ + + PG+K + + +++ C +I + +++P D+
Sbjct: 348 ENESVDSDDKNNIFS------PGMKMMKYEGVETKVDLSCQRNQIPSPDIFSPLDS 397
>sp|D1FP57|LIN2_LOTJA Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus GN=LIN
PE=1 SV=1
Length = 1485
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 185/366 (50%), Gaps = 11/366 (3%)
Query: 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEA 799
+ AI ILEQ L + R NA +IS G+ L+ E ++E + V +++ CC++A
Sbjct: 809 DAAIAILEQTLMGGDEYSRSLNASSVISANGIPTLVKYLE--RMEGRRSVVSVLLCCMQA 866
Query: 800 DAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEEL 859
+ C+N +A I + +LEL HS R V L +L+ L+RR + LL +++E
Sbjct: 867 EKSCKNLIANRIELSPVLELFHSGNDSVRGTCVEFLSELVQLNRRTSCNQLLHTIKDEGA 926
Query: 860 VNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDE 919
+ MH L+YLQ +P E + + LLL LDLL EPRK SIYRE AV+ + AL +
Sbjct: 927 FSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQK-DFS 985
Query: 920 KIQEKCCRALLILGGRFSFSREVANESWILKPAGF----NDRCEGNSLDNDENDLPVDDS 975
Q K ALL L G S S + E+W+LK AGF N + L +NDL
Sbjct: 986 NTQMKALDALLFLIGHISSSGKSYTEAWLLKIAGFDQPYNALMKVEQLGQHDNDL----I 1041
Query: 976 TPLDDEEQASEEWLRKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALS 1035
++DE+ A W +++++ L + S + + + L S + + CL WL+ L
Sbjct: 1042 ETMEDEKNALNSWQKRIASVLCNHENGSIFKALEECLKSNSLKMAKSCLVLATWLTRMLY 1101
Query: 1036 AQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIPECGAVLKTIAAEIR 1095
PD + A +++ ++ ++L + + + +L ++SL F P VL+ A I
Sbjct: 1102 TLPDTGVRDVARKSLLEEVIKVLHSSKSLEDMILVTLSLYPFISDPTVHEVLRVYAKSIY 1161
Query: 1096 IPLQSL 1101
L+ L
Sbjct: 1162 RILRKL 1167
Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 156/609 (25%), Positives = 254/609 (41%), Gaps = 139/609 (22%)
Query: 206 IVSILSGYVKSFLK----NEDFRATLRRKCFSSL----NFIEPEDEGNSNESKVIASLEQ 257
IV L+ V SF++ N++ R + +C L + + E ++ V+A+L+
Sbjct: 14 IVRFLTTTVDSFIQDRLINKEQRTQHKEQCAERLAAEDGSGDKDTEVEYSDQAVLANLDW 73
Query: 258 AIETVQRAAEESASSKELKKASLQLSMITGMSANDLKDGSTSGVPNSKLSACAHLYLSVI 317
IE ++ A +L + M+ + + K +GVPNS LSA AHL LS +
Sbjct: 74 GIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQ-KIAGVPNSYLSAWAHLNLSYL 132
Query: 318 YKIQKKDRVSAKHLLQVFCDSPFMARTTLLPELWDYLISPHLAHLKAWYKQEADSLADE- 376
+K++ + H L++F PF R PELW L PH++ + WY +E L E
Sbjct: 133 WKLRNNVQNCISHALEMFIVDPFFTRIDFAPELWKSLFLPHMSSIVGWYSEERHRLMMEV 192
Query: 377 -----------------------SNKPR---KMKLLEKVYNEILDSGTYQFAVYYKDWLT 410
+ +P K++ LE++Y E LD T +A YY D +
Sbjct: 193 IPDSADLSFTADFEQFFNESLVLTMRPHQLEKLQKLEQLYGESLDENTKLYAKYYNDCMN 252
Query: 411 EGIED-----PSVPTIQIPSLSVQRHQRK-GSFGNSSEVASPAAAFSPQPTVSKKLYDAV 464
P +P + P + R F + +A FS P L + +
Sbjct: 253 SDSSSSKKAVPMLPIAEPPMTPLHELSRTIPDFVKFGPILPKSAGFSLAPRSKDVLNETI 312
Query: 465 FERAS-------KPRVDAAEDDGEMENFDNYARSSGGSTVEKRTLTYSSEIVKCTYQDTE 517
E + K + A+D EN D+ D+E
Sbjct: 313 RENVTSSNLKEEKLSIWGAKDTIIEENEDD--------------------------SDSE 346
Query: 518 DDSPKIAQDDLFHPEDELLLAAEEGWRLPGVKYPAERNINSNINICCTSKKIQTIKLYTP 577
D+ + DD + PG+K + + +++ C +I + +++P
Sbjct: 347 LDNESVDSDD------------KNNIFSPGMKMMKYEGVETKVDLSCQRNQIPSPDIFSP 394
Query: 578 ---PDTKAN------ELTLKRLAK----SAFEQQQTEGCTALTISSPP------STSEAP 618
P T N ++ KR +K S+ ++ +LT SSP S ++
Sbjct: 395 LDSPRTAPNNSSPNPDMHSKRDSKFLRLSSSRIREPTISDSLT-SSPDISIDNISNADNE 453
Query: 619 VNLR-----------PSFEELHEN-------------DEY--------FDKGSFLTSIPQ 646
V +R PS + +EN D Y +K S + P+
Sbjct: 454 VMVRNNIKRKNDSQTPSMNQDNENSLVLNDSSHCESEDGYQSSSSLPKLEKLSMGSKPPK 513
Query: 647 DFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKR 706
DF+CP+TGQ+F +PVTLE+GQT+E +AI+EW+ GN TCP+T + L+ LP TN++LKR
Sbjct: 514 DFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSASILPKTNYVLKR 573
Query: 707 VIDGWKSEN 715
+I WK +N
Sbjct: 574 LITSWKEQN 582
>sp|D1FP53|LIN_MEDTR Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula
GN=LIN PE=2 SV=1
Length = 1488
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 191/365 (52%), Gaps = 13/365 (3%)
Query: 742 AIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADA 801
AI ILEQ+L + R NA +IS G+ ++ + K E + V +++ CC++A+
Sbjct: 814 AIAILEQILIGGDEYNRSVNASSVISANGIPAIVKYLD--KTEGRRPVISILLCCMQAEK 871
Query: 802 GCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVN 861
C++ +A I + +LEL H+ R V L +L+ L+RR + L+ +++E +
Sbjct: 872 SCKSSIANRIELSPVLELFHAGNDSVRGICVEFLSELVRLNRRTSSNQTLQIIKDEGAFS 931
Query: 862 AMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVAL-EESLTDEK 920
MH L+YLQ +P E + + LLL LDLL EPRK SIYRE AV+ + AL ++ ++
Sbjct: 932 TMHTFLVYLQMAPMEHQIAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNN- 990
Query: 921 IQEKCCRALLILGGRFSFSREVANESWILKPAGF----NDRCEGNSLDNDENDLPVDDST 976
Q K ALL L G + S + E+ +LK AGF N + L + +ND
Sbjct: 991 -QMKALDALLFLIGHVTSSGKSYTEAGLLKIAGFDQPYNVLMKAEQLGHSDNDF----ME 1045
Query: 977 PLDDEEQASEEWLRKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSA 1036
++DE+ A + W +++++ L + S + + + L S + + CL WL+H L
Sbjct: 1046 TMEDEKNAMKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFT 1105
Query: 1037 QPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIPECGAVLKTIAAEIRI 1096
PD + A +++ L +LQ+ + ++K+LAS++L +F P VL+ A I
Sbjct: 1106 LPDTGVRDVARKSLLEALMNVLQSSKNLEEKILASLALKSFISDPTVHEVLRVYAKSIYR 1165
Query: 1097 PLQSL 1101
L+ L
Sbjct: 1166 ILRKL 1170
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 57/71 (80%)
Query: 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFIL 704
P+DF+CP+TGQ+F +PVTLE+GQT+E +AI+EW+ GN TCP+T + L+ LP TN++L
Sbjct: 514 PKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQALSANILPKTNYVL 573
Query: 705 KRVIDGWKSEN 715
KR+I WK +N
Sbjct: 574 KRLIVSWKEQN 584
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 109/236 (46%), Gaps = 32/236 (13%)
Query: 203 VQAIVSILSGYVKSFLKNEDFRATLRRKCFSSL----NFIEPEDEGNSNESKVIASLEQA 258
V+ + + + +++ L N++ R + +C L + E E ++ V+A+L+
Sbjct: 15 VRFLTTTIDSFIQDRLINKEQRTQHKDQCAERLAAEDGNTDKETEVEYSDQAVLANLDWG 74
Query: 259 IETVQRAAEESASSKELKKASLQLSMITGMSANDLKDGSTSGVPNSKLSACAHLYLSVIY 318
IE ++ A +L + M+ + + K T+GVPNS LSA AHL LS ++
Sbjct: 75 IEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQ-KTAGVPNSYLSAWAHLNLSYLW 133
Query: 319 KIQKKDRVSAKHLLQVFCDSPFMARTTLLPELWDYLISPHLAHLKAWYKQE--------- 369
K++ + H L++F PF +R PELW L PH++ + WY +E
Sbjct: 134 KLRNNIKSCIYHSLEMFIVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHKLMMEVL 193
Query: 370 -----------ADSLADES-------NKPRKMKLLEKVYNEILDSGTYQFAVYYKD 407
D + +ES N+ K++ LE++Y E LD T +A YY D
Sbjct: 194 PESTDFSYTADFDKVFNESLVFSMRPNQLEKLQKLEQLYGESLDENTRLYAKYYND 249
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica
GN=PUB12 PE=2 SV=1
Length = 611
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 627 ELHENDEYFDKGSFLTS----IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGN 682
E H ND + + + IP +F CP++ +L ++PV + SGQT+E I++W++ G+
Sbjct: 207 EDHANDALTTRSASIKHRSPIIPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGH 266
Query: 683 RTCPVTGKYLACPSLPLTNFILKRVIDGWKSENCMHLLAFAFQIVEKSRMNESKNGDETA 742
+TCP T + L+ SL NF+LK +I W N + L +K S
Sbjct: 267 KTCPKTQQPLSHTSL-TPNFVLKSLISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGL 325
Query: 743 IFILEQLLTVFSDQERITNAK-HLISIGGLQFLICRFESGKL 783
+ ++ +L + D++R + L++ + IC E+G +
Sbjct: 326 VSLMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAI 367
>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15
PE=2 SV=2
Length = 660
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 62/104 (59%), Gaps = 10/104 (9%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
+P +F+CP+T ++ +PV + +GQT+E E+I++W + G++TCP T + L SL NF
Sbjct: 290 LPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLA-PNFA 348
Query: 704 LKRVIDGWKSENCMHLLAFAFQIVEKSRMNESKN--GDETAIFI 745
LK +I W +N F+I EK +S+N DE ++ +
Sbjct: 349 LKNLIMQWCEKN-------NFKIPEKEVSPDSQNEQKDEVSLLV 385
>sp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9
PE=1 SV=1
Length = 460
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 642 TSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLT- 700
S P++F CPL+ +L +PV L SGQT++ I++W+ GNRTCP T + L P LT
Sbjct: 72 VSCPEEFRCPLSNELMRDPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVL--PHTALTP 129
Query: 701 NFILKRVIDGWKSENCM 717
N +++ +I W +N +
Sbjct: 130 NLLIREMISKWCKKNGL 146
>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12
PE=2 SV=1
Length = 654
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 7/106 (6%)
Query: 612 PSTSEAPVNLRPSFEELHENDEYFDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFEC 671
P+ +AP+ L+ S + ++D + P++F CP++ +L +PV + SGQT+E
Sbjct: 230 PNLDDAPLRLKSSLPKSRDDDRD------MLIPPEEFRCPISLELMTDPVIVSSGQTYER 283
Query: 672 EAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSENCM 717
E IK+W+E G+ TCP T + L + N++L+ +I W N +
Sbjct: 284 ECIKKWLEGGHLTCPKTQETLTS-DIMTPNYVLRSLIAQWCESNGI 328
>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11
PE=2 SV=2
Length = 612
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 9/117 (7%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNF 702
+IP DF+CP++ +L ++PV + +GQT+E I+ WI+ GN TCP T + L +L N+
Sbjct: 240 TIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLT-PNY 298
Query: 703 ILKRVIDGWKSENCMHLLAFAFQIVEKSRMNESKN-GDETAIFILEQLLTVFSDQER 758
+L+ +I W +E+ + A +KN GD + I L Q L+ S ++R
Sbjct: 299 VLRSLISRWCAEHNIEQPAGYIN-------GRTKNSGDMSVIRALVQRLSSRSTEDR 348
>sp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16
PE=2 SV=1
Length = 674
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNF 702
+IP DF CP+T +L +PV + +GQT++ E+I WI+ G+ TCP TG+ L SL + N
Sbjct: 273 NIPADFRCPITLELMRDPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVLKHTSL-VPNR 331
Query: 703 ILKRVIDGW 711
LK +I W
Sbjct: 332 ALKNLIVLW 340
>sp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43
PE=2 SV=1
Length = 811
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 630 ENDEYFDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNR-----T 684
+N F+ G + +I + FICPLT Q+ PVTLE+GQTFE EAI++W ++ +
Sbjct: 13 DNSSQFEPG--IDNIYEAFICPLTKQVMHNPVTLENGQTFEREAIEKWFQECRENGQPLS 70
Query: 685 CPVTGKYLACPSLPLTNFILKRVIDGWKSEN 715
CP+T K L+ L + L+ I+ W++ N
Sbjct: 71 CPITSKELSITDLS-PSIALRNTIEEWRARN 100
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13
PE=1 SV=1
Length = 660
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
IP DF CP++ ++ +PV + SGQT+E I++WIE G+ TCP T + L +L N++
Sbjct: 256 IPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTL-TPNYV 314
Query: 704 LKRVIDGWKSEN 715
L+ +I W N
Sbjct: 315 LRSLIAQWCEAN 326
>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica
GN=SPL11 PE=1 SV=2
Length = 694
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNF 702
+IP +F CP++ +L ++PV + +GQT+E I++WI G+ TCP T + ++ +L N+
Sbjct: 272 TIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSAL-TPNY 330
Query: 703 ILKRVIDGWKSENCM 717
+L+ +I W N M
Sbjct: 331 VLRSLISQWCETNGM 345
>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1
SV=2
Length = 694
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNF 702
+IP +F CP++ +L ++PV + +GQT+E I++WI G+ TCP T + ++ +L N+
Sbjct: 272 TIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSAL-TPNY 330
Query: 703 ILKRVIDGWKSENCM 717
+L+ +I W N M
Sbjct: 331 VLRSLISQWCETNGM 345
>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17
PE=2 SV=1
Length = 729
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 638 GSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLA---- 693
G ++P+DF+CP++ L +PV + +GQT++ +I WIE+G+ TCP TG+ L
Sbjct: 299 GDTFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRI 358
Query: 694 CPSLPLTNFILK 705
P+ L N I++
Sbjct: 359 VPNRALKNLIVQ 370
>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10
PE=2 SV=1
Length = 628
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 630 ENDEYFDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTG 689
EN + K LT IP+DF+CP++ +L ++P + +GQT+E I+ WI+ GN +CP T
Sbjct: 230 ENSDDSQKSDNLT-IPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQ 288
Query: 690 KYLACPSLPLTNFILKRVIDGW 711
+ L +L N++L+ +I W
Sbjct: 289 QKLENFTLT-PNYVLRSLISQW 309
>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26
PE=2 SV=1
Length = 421
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 631 NDEYFDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGK 690
N E D G IP F CP++ L +PVT+ +GQT++ +I WI GN TCPVT
Sbjct: 4 NLEPLDLG---IQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRV 60
Query: 691 YLACPSLPLTNFILKRVIDGWKSEN 715
L+ +L + N L+R+I W N
Sbjct: 61 ALSDFTL-IPNHTLRRLIQEWCVAN 84
>sp|O81902|PUB8_ARATH U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8
PE=2 SV=1
Length = 374
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 35/45 (77%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVT 688
+P DF CP++ ++ +PV L+SG TF+ +I++WI+ GNRTCP+T
Sbjct: 5 LPNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPIT 49
>sp|Q9CAA7|PUB42_ARATH Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana
GN=PUB42 PE=2 SV=1
Length = 1033
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 646 QDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQ-GNR---TCPVTGKYLACPSLPLTN 701
Q FICPLT ++ E+PVT E+G T E +A+ EW + GN CPVTG+ L N
Sbjct: 248 QAFICPLTKEIMEDPVTTETGVTCERQAVIEWFDSFGNSDEINCPVTGQKLTTE--LSAN 305
Query: 702 FILKRVIDGWKSEN 715
+LK +I WK N
Sbjct: 306 VVLKTIIQEWKVRN 319
>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20
PE=2 SV=1
Length = 431
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYL-ACPSLPLTN 701
+IP F CP++ +L ++PV + SG T++ E I++W E G +TCPVT L + +P N
Sbjct: 32 TIPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQTCPVTNTVLTSLEQIP--N 89
Query: 702 FILKRVIDGW 711
++R+I GW
Sbjct: 90 HTIRRMIQGW 99
>sp|O80742|PUB19_ARATH U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19
PE=2 SV=1
Length = 686
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 647 DFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKR 706
D CP++ ++ +PV LESG T++ +I +W GN TCP TGK L L + NF +K+
Sbjct: 281 DLRCPISLEIMSDPVVLESGHTYDRSSITKWFASGNITCPKTGKTLVSTVL-VDNFSVKQ 339
Query: 707 VIDGWKSEN 715
VI + +N
Sbjct: 340 VIQSYSKQN 348
>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14
PE=1 SV=1
Length = 632
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
IP+ F CP++ +L ++PV + +GQT+E +I++W++ G++TCP + + L L N++
Sbjct: 248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT-PNYV 306
Query: 704 LKRVIDGWKSENCMHL 719
LK +I W N + L
Sbjct: 307 LKSLIALWCESNGIEL 322
>sp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica
GN=PUB4 PE=2 SV=1
Length = 728
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 636 DKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACP 695
D SF S+P++F CP++ L +PV +GQT++ +I +WIE+G+ TCP +G+ LA
Sbjct: 291 DDTSF--SVPKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIEEGHSTCPNSGQTLADH 348
Query: 696 SLPLTNFILKRVIDGW 711
L + N L+ +I W
Sbjct: 349 RL-VPNRALRSLISQW 363
>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4
PE=1 SV=3
Length = 826
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNF 702
+I DF CPL+ ++ +PV + SGQT+E IK WI+ G + CP T + L +L + N+
Sbjct: 229 AILADFFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTL-IPNY 287
Query: 703 ILKRVIDGWKSENCMHL 719
+K +I W N + L
Sbjct: 288 TVKALIANWCETNDVKL 304
>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3
PE=2 SV=2
Length = 760
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 633 EYFDKGSFL-----TSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPV 687
E+ K FL SIP F CPL+ +L +PV + SGQTF+ +IK+W++ G CP
Sbjct: 222 EHMLKTEFLEVAKGISIPPYFRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPR 281
Query: 688 TGKYLACPSLPLTNFILKRVIDGWKSENCMHL 719
T + L L + N+ +K +I W N ++L
Sbjct: 282 TRQVLTHQEL-IPNYTVKAMIASWLEANRINL 312
>sp|Q5FVN8|WSDU1_RAT WD repeat, SAM and U-box domain-containing protein 1 OS=Rattus
norvegicus GN=Wdsub1 PE=2 SV=1
Length = 476
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 639 SFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLP 698
S + IP +FICP+T +L ++PV G ++E EA++ WI + RT P+T LA PSL
Sbjct: 399 SLSSGIPDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRTSPMTN--LALPSLV 456
Query: 699 LT-NFILKRVIDGW 711
LT N LK I+ W
Sbjct: 457 LTPNRTLKMAINRW 470
>sp|Q9LM76|PUB44_ARATH U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44
PE=1 SV=1
Length = 801
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 18/211 (8%)
Query: 634 YFDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNR-----TCPVT 688
+F++G + I + FICPLT ++ +PVTLE+G+TFE EAI++W ++ +CP+T
Sbjct: 15 HFERG--VDHIYEAFICPLTKEVMHDPVTLENGRTFEREAIEKWFKECRDSGRPPSCPLT 72
Query: 689 GKYLACPSLPLTNFILKRVIDGWKSENCMHLLAFAFQIVEKSRMNESKNGDETAIFILEQ 748
+ L + + L+ I+ W+S N A I +S + D IL+
Sbjct: 73 SQELTSTDVS-ASIALRNTIEEWRSRND----AAKLDIARQSLFLGNAETD-----ILQA 122
Query: 749 LLTVFSDQERITNAKHLISIGGL-QFLICRFESGKLEEKARVAALMCCCIEADAGCRNQM 807
L+ V I + +H + L +I +S + + + +E D + +
Sbjct: 123 LMHVRQICRTIRSNRHGVRNSQLIHMIIDMLKSTSHRVRYKALQTLQVVVEGDDESKAIV 182
Query: 808 ARNINVYSLLELLHSKQVKPRTNTVLLLIDL 838
A V +L++ L + K R V LL +L
Sbjct: 183 AEGDTVRTLVKFLSHEPSKGREAAVSLLFEL 213
>sp|Q9D0I6|WSDU1_MOUSE WD repeat, SAM and U-box domain-containing protein 1 OS=Mus
musculus GN=Wdsub1 PE=2 SV=1
Length = 474
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 624 SFEELHENDEYFDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNR 683
S EEL + G IP +FICP+T +L ++PV G ++E EA++ WI + R
Sbjct: 387 SIEELRAKMDSLSSG-----IPDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKR 441
Query: 684 TCPVTGKYLACPSLPLT-NFILKRVIDGW 711
T P+T LA PSL LT N LK I+ W
Sbjct: 442 TSPMTN--LALPSLVLTPNRTLKMAINRW 468
>sp|Q9LXE3|PUB28_ARATH U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28
PE=1 SV=1
Length = 409
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 640 FLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPL 699
++T++P F CP++ + + PV+L +G T++ +I+ W++ GN TCP T + L +
Sbjct: 7 YITTVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQNKEF-V 65
Query: 700 TNFILKRVIDGW 711
N L R+ID W
Sbjct: 66 PNLTLHRLIDHW 77
>sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21
PE=2 SV=1
Length = 435
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNF 702
+IP +F CP++ L ++PV + +G T++ +I+ WI GN+TCPVT L + N
Sbjct: 30 TIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSGNKTCPVTNTVLTTFD-QIPNH 88
Query: 703 ILKRVIDGWKSE 714
++++I GW E
Sbjct: 89 TIRKMIQGWCVE 100
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
PE=2 SV=2
Length = 435
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFIL 704
PQ FICP+T + E+P G T+E EAI W E+G+ T P+ K L SL + N L
Sbjct: 354 PQYFICPITHDIMEDPHVAADGFTYEGEAISRWFERGHETSPMINKRLPHTSL-VPNLAL 412
Query: 705 KRVIDGW 711
+ I W
Sbjct: 413 RSAIQEW 419
>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2
PE=2 SV=1
Length = 707
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
+P DF C L+ +L +PV + SGQTFE I++WI+ G CP T + L+ +L NFI
Sbjct: 240 VPSDFRCSLSLELMTDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQALSHTTLT-PNFI 298
Query: 704 LKRVIDGWKSEN---------CMHLLAFAFQIVEKSRMNESKNGDETAIFILEQLLTVFS 754
++ + W N +H +VE R + S+NG ++ E+L VFS
Sbjct: 299 VRAFLASWCETNNVYPPDPLELIHSSEPFPLLVESVRASSSENGHSESLDA-EELRQVFS 357
>sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6
PE=2 SV=2
Length = 771
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLT-NFI 703
P++ CP++ QL +PV + SGQT+E I++W G+ +CP T + L P L LT N+
Sbjct: 276 PEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQL--PHLSLTPNYC 333
Query: 704 LKRVIDGWKSEN 715
+K +I W +N
Sbjct: 334 VKGLIASWCEQN 345
>sp|Q9XIJ5|PUB18_ARATH U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18
PE=2 SV=1
Length = 697
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 646 QDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILK 705
+D +CP++ ++ +PV +E+G T++ +I +W GN TCP+TGK L L + N ++
Sbjct: 290 EDLLCPISLEIMTDPVVIETGHTYDRSSITKWFGSGNITCPITGKILTSTEL-VDNVSVR 348
Query: 706 RVI 708
+VI
Sbjct: 349 QVI 351
>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25
PE=2 SV=1
Length = 421
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 628 LHENDEYFDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNR-TCP 686
+ N E D G IP F CP++ +L ++PVT+ +GQT++ +I+ W+ GN TCP
Sbjct: 1 MPRNIEPLDLG---IQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCP 57
Query: 687 VTGKYLACPSLPLTNFILKRVIDGWKSEN 715
VT L+ +L + N L+R+I W N
Sbjct: 58 VTRAPLSDFTL-IPNHTLRRLIQEWCVAN 85
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana
GN=PUB55 PE=3 SV=1
Length = 568
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 634 YFDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLA 693
+ D+ S P FICP++ ++ EP G T+E E+++EW++ G+ T P+T LA
Sbjct: 487 FSDEDSVTRQPPSYFICPISQEVMREPRVAADGFTYEAESLREWLDNGHETSPMTNLKLA 546
Query: 694 CPSLPLTNFILKRVIDGWKSEN 715
+L + N L+ I W N
Sbjct: 547 HNNL-VPNHALRSAIQEWLQRN 567
>sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45
PE=1 SV=1
Length = 768
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 637 KGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPS 696
+ S ++ P++ CP++ QL +PV + SGQT+E I++W G+ TCP T + L+
Sbjct: 272 RSSQMSVPPEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQLS--H 329
Query: 697 LPLT-NFILKRVIDGWKSEN 715
L LT N+ +K +I W +N
Sbjct: 330 LCLTPNYCVKALISSWCEQN 349
>sp|Q8N9V3|WSDU1_HUMAN WD repeat, SAM and U-box domain-containing protein 1 OS=Homo
sapiens GN=WDSUB1 PE=1 SV=3
Length = 476
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 639 SFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLP 698
S + IP +FICP+T +L ++PV G ++E EA++ WI + RT P+T L PS
Sbjct: 399 SLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTN--LVLPSAV 456
Query: 699 LT-NFILKRVIDGW 711
LT N LK I+ W
Sbjct: 457 LTPNRTLKMAINRW 470
>sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7
PE=2 SV=1
Length = 782
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLT-NFI 703
P++ CP++ QL +PV + SGQT+E I++W G+ TCP T + L P + LT N
Sbjct: 273 PEELRCPISLQLMCDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQQL--PHISLTPNNC 330
Query: 704 LKRVIDGWKSEN 715
+K +I W +N
Sbjct: 331 VKGLIASWCEQN 342
>sp|Q9LSA6|PUB29_ARATH U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29
PE=1 SV=1
Length = 415
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNF 702
++P F CP++ + PV+L +G T++ +I+ W++ GN TCP T + L + N
Sbjct: 11 TVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLLKTKDF-VPNL 69
Query: 703 ILKRVIDGW 711
L+R+I+ W
Sbjct: 70 TLQRLINIW 78
>sp|Q3E9F7|PUB46_ARATH Putative U-box domain-containing protein 46 OS=Arabidopsis thaliana
GN=PUB46 PE=3 SV=1
Length = 458
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
+P++FIC L+ + EPV + SGQT+E I EW++ RTCP T + L+ L + N +
Sbjct: 72 VPKEFICTLSNTIMIEPVIIASGQTYEKRYITEWLKH-ERTCPKTKQVLS-HRLWIPNHL 129
Query: 704 LKRVIDGW 711
+ +I W
Sbjct: 130 ISDLITQW 137
>sp|Q9SF15|PUB24_ARATH E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24
PE=1 SV=1
Length = 456
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
IP FICP++ ++ ++PVT SG T++ + I +W+E+ +CPVT + L S N +
Sbjct: 10 IPNYFICPISLEIMKDPVTTVSGITYDRQNIVKWLEKVP-SCPVTKQPLPLDSDLTPNHM 68
Query: 704 LKRVIDGWKSEN 715
L+R+I W EN
Sbjct: 69 LRRLIQHWCVEN 80
>sp|Q3E9F6|PUB47_ARATH Putative U-box domain-containing protein 47 OS=Arabidopsis thaliana
GN=PUB47 PE=3 SV=1
Length = 445
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFI 703
+P++FIC L+ ++ EP+ + SGQTFE I EW++ RTCP T + L + N +
Sbjct: 65 VPKEFICTLSNKIMIEPMLIASGQTFEKSYILEWLKH-ERTCPRTKQVLY-HRFMIPNHL 122
Query: 704 LKRVIDGW 711
+ VI W
Sbjct: 123 INEVIKEW 130
>sp|Q9FLF4|PUB27_ARATH U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27
PE=2 SV=1
Length = 420
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 637 KGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPS 696
K ++P F CP++ + + PV+L +G T++ +I+ W++ GN TCP T + L
Sbjct: 3 KDDLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQNKD 62
Query: 697 LPLTNFILKRVIDGW 711
+ N L+R+I+ W
Sbjct: 63 F-IPNRTLQRLIEIW 76
>sp|Q5ZMC3|WSDU1_CHICK WD repeat, SAM and U-box domain-containing protein 1 OS=Gallus
gallus GN=WDSUB1 PE=2 SV=2
Length = 476
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLT-N 701
++P +F+CP+T +L ++PV G ++E EA++ WI R+ P+T L PSL LT N
Sbjct: 403 AVPDEFLCPITRELMKDPVIAADGYSYEKEAMENWISNNRRSSPMTN--LPLPSLVLTPN 460
Query: 702 FILKRVIDGW 711
LK I W
Sbjct: 461 RTLKMAISRW 470
>sp|Q9FHN9|PUB31_ARATH U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31
PE=2 SV=1
Length = 444
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 30/145 (20%)
Query: 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLT 700
L IP FICP++ + ++PVTL +GQT+E I +W G+ TCP T + L L
Sbjct: 57 LPEIPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQELW-DDLVTP 115
Query: 701 NFILKRVIDGW----------KSENC-------------------MHLLAFAFQIVEKSR 731
N L ++I W +SE+ +H L+ Q+V
Sbjct: 116 NKTLHQLIYTWFSQKYVLMKKRSEDVQGRAIEILGTLRKAKGKAKVHALSELKQVVMAHA 175
Query: 732 MNESKNGDETAIFILEQLLTVFSDQ 756
+ + DE +F++ LL+ F+
Sbjct: 176 IAKKTVVDEGGVFVISSLLSPFTSH 200
>sp|Q0DR28|PUB57_ORYSJ U-box domain-containing protein 57 OS=Oryza sativa subsp. japonica
GN=PUB57 PE=2 SV=1
Length = 518
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 634 YFDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLA 693
Y S +S+P FICP++ ++ ++P G T+E EAI+ W ++G P+T LA
Sbjct: 425 YLQSASGDSSVPAAFICPISMEIMKDPQVASDGFTYEAEAIRCWFDRGISRSPMTN--LA 482
Query: 694 CPSLPLT-NFILKRVIDGW 711
P+L L N +L+ I G+
Sbjct: 483 LPNLNLVPNRVLRSFIHGY 501
>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22
PE=1 SV=1
Length = 435
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNR-TCPVTGKYLACPSLPLTNF 702
IP F+CP++ + ++PV + +G T++ E+I++W+ G + +CPVT + + L N
Sbjct: 7 IPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVITETDLT-PNH 65
Query: 703 ILKRVIDGWKSEN 715
L+R+I W + N
Sbjct: 66 TLRRLIQSWCTLN 78
>sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30
PE=2 SV=1
Length = 448
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYL 692
L IP FICP++ + ++PVTL +GQT+E I +W G+ TCP T + L
Sbjct: 61 LQDIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQEL 112
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37
PE=2 SV=1
Length = 400
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFIL 704
PQ FICP++ ++ ++P G T+E EAI W++ G+ T P+T L L + N L
Sbjct: 326 PQYFICPISLEVMKDPQLAADGFTYEAEAISTWLQGGHETSPMTNTKLHHTKL-VPNLAL 384
Query: 705 KRVIDGW 711
+ I W
Sbjct: 385 RSAIQEW 391
>sp|O23225|PUB5_ARATH U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5
PE=2 SV=3
Length = 718
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNF 702
++P+ F C L+ + +PV + SG TFE I++W ++GN +CP++ + L +L N
Sbjct: 218 TLPEKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDEGNDSCPISKRKLDDFTLK-PNV 276
Query: 703 ILKRVIDGWKSEN 715
LK I W ++N
Sbjct: 277 ELKSQISEWCAKN 289
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 390,403,093
Number of Sequences: 539616
Number of extensions: 16189806
Number of successful extensions: 40923
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 222
Number of HSP's that attempted gapping in prelim test: 40300
Number of HSP's gapped (non-prelim): 714
length of query: 1122
length of database: 191,569,459
effective HSP length: 128
effective length of query: 994
effective length of database: 122,498,611
effective search space: 121763619334
effective search space used: 121763619334
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)