Query 041480
Match_columns 1122
No_of_seqs 325 out of 1457
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:34:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04564 U-box: U-box domain; 99.7 1.3E-18 2.8E-23 156.6 4.9 72 644-716 1-72 (73)
2 PLN03200 cellulose synthase-in 99.7 1.7E-15 3.7E-20 198.4 30.4 341 740-1101 33-538 (2102)
3 PLN03200 cellulose synthase-in 99.7 9.5E-15 2E-19 191.6 29.3 309 740-1079 464-811 (2102)
4 smart00504 Ubox Modified RING 99.5 6.6E-15 1.4E-19 127.6 5.0 63 647-711 1-63 (63)
5 KOG4224 Armadillo repeat prote 99.4 5.5E-12 1.2E-16 140.7 15.7 250 760-1083 199-450 (550)
6 KOG4224 Armadillo repeat prote 99.3 1.9E-11 4.2E-16 136.5 12.2 297 759-1098 116-422 (550)
7 PF05804 KAP: Kinesin-associat 99.2 6.7E-10 1.5E-14 136.7 24.3 301 759-1102 280-585 (708)
8 KOG0166 Karyopherin (importin) 99.2 9.1E-10 2E-14 130.0 23.0 288 740-1103 128-417 (514)
9 PF15227 zf-C3HC4_4: zinc fing 98.9 4.9E-10 1.1E-14 91.1 2.3 39 650-688 1-42 (42)
10 PF05804 KAP: Kinesin-associat 98.9 1.8E-07 4E-12 115.6 24.2 307 760-1115 322-647 (708)
11 TIGR00599 rad18 DNA repair pro 98.9 2.2E-09 4.8E-14 124.2 6.3 74 641-716 20-93 (397)
12 COG5064 SRP1 Karyopherin (impo 98.8 8.8E-08 1.9E-12 107.0 15.1 266 763-1104 151-425 (526)
13 PLN03208 E3 ubiquitin-protein 98.7 4.3E-09 9.3E-14 110.8 3.2 61 641-702 12-87 (193)
14 KOG0166 Karyopherin (importin) 98.7 4.5E-07 9.7E-12 107.7 19.0 252 813-1103 68-331 (514)
15 KOG4642 Chaperone-dependent E3 98.7 1.1E-08 2.3E-13 110.3 3.9 81 635-716 199-279 (284)
16 PF11789 zf-Nse: Zinc-finger o 98.4 5.7E-08 1.2E-12 84.1 0.9 45 645-689 9-55 (57)
17 PF13923 zf-C3HC4_2: Zinc fing 98.4 1.2E-07 2.6E-12 75.6 2.6 38 650-688 1-39 (39)
18 KOG2177 Predicted E3 ubiquitin 98.3 3E-07 6.6E-12 98.9 4.3 71 642-716 8-78 (386)
19 cd00020 ARM Armadillo/beta-cat 98.3 8.7E-06 1.9E-10 76.9 11.4 117 807-933 3-119 (120)
20 PF13445 zf-RING_UBOX: RING-ty 98.2 4.4E-07 9.6E-12 74.3 2.1 36 650-686 1-43 (43)
21 PF00097 zf-C3HC4: Zinc finger 98.2 7.2E-07 1.6E-11 71.4 2.9 39 650-688 1-41 (41)
22 cd00020 ARM Armadillo/beta-cat 98.2 1.3E-05 2.7E-10 75.8 11.6 118 764-889 2-119 (120)
23 KOG0287 Postreplication repair 98.2 6.9E-07 1.5E-11 99.5 3.0 72 641-714 17-88 (442)
24 KOG1048 Neural adherens juncti 98.1 3.9E-05 8.5E-10 94.2 15.4 166 759-934 265-452 (717)
25 PF04826 Arm_2: Armadillo-like 98.1 4.8E-05 1E-09 84.5 14.7 161 766-948 9-172 (254)
26 PHA02929 N1R/p28-like protein; 98.1 2.2E-06 4.7E-11 93.9 3.9 50 644-694 171-228 (238)
27 PF13920 zf-C3HC4_3: Zinc fing 98.0 2.8E-06 6.1E-11 71.2 3.0 47 646-693 1-48 (50)
28 PF14835 zf-RING_6: zf-RING of 98.0 1.4E-06 3E-11 76.7 0.8 59 646-708 6-65 (65)
29 KOG0823 Predicted E3 ubiquitin 98.0 2.9E-06 6.3E-11 91.2 2.7 55 645-700 45-101 (230)
30 cd00162 RING RING-finger (Real 98.0 6.4E-06 1.4E-10 65.3 3.6 43 649-691 1-44 (45)
31 COG5064 SRP1 Karyopherin (impo 98.0 0.00037 8E-09 78.8 18.4 301 771-1115 73-393 (526)
32 KOG2160 Armadillo/beta-catenin 97.9 0.00032 6.9E-09 80.2 17.6 184 740-939 101-287 (342)
33 KOG0320 Predicted E3 ubiquitin 97.9 5.7E-06 1.2E-10 85.8 2.6 50 647-697 131-182 (187)
34 PF04826 Arm_2: Armadillo-like 97.9 0.00029 6.2E-09 78.4 15.8 160 760-935 45-206 (254)
35 PF13639 zf-RING_2: Ring finge 97.8 8E-06 1.7E-10 66.6 1.9 40 649-689 2-44 (44)
36 KOG2042 Ubiquitin fusion degra 97.8 1.8E-05 3.9E-10 99.3 5.4 74 641-716 864-938 (943)
37 smart00184 RING Ring finger. E 97.8 1.6E-05 3.5E-10 60.8 3.1 39 650-688 1-39 (39)
38 COG5432 RAD18 RING-finger-cont 97.8 1.2E-05 2.6E-10 88.3 2.8 69 643-713 21-89 (391)
39 KOG1048 Neural adherens juncti 97.7 0.00079 1.7E-08 83.1 16.2 176 771-959 235-423 (717)
40 PHA02926 zinc finger-like prot 97.7 3E-05 6.5E-10 83.2 3.6 52 643-694 166-231 (242)
41 TIGR00570 cdk7 CDK-activating 97.6 7.6E-05 1.7E-09 84.3 5.4 51 646-696 2-57 (309)
42 PF10508 Proteasom_PSMB: Prote 97.6 0.027 5.9E-07 68.5 27.6 339 742-1112 58-429 (503)
43 KOG0317 Predicted E3 ubiquitin 97.5 5.6E-05 1.2E-09 83.7 3.7 54 642-696 233-287 (293)
44 KOG0311 Predicted E3 ubiquitin 97.5 2.5E-05 5.5E-10 88.2 0.5 70 642-711 38-108 (381)
45 KOG4199 Uncharacterized conser 97.5 0.0018 3.9E-08 73.5 14.8 185 761-960 233-423 (461)
46 KOG2660 Locus-specific chromos 97.4 7.4E-05 1.6E-09 84.1 2.9 69 642-711 10-82 (331)
47 KOG2164 Predicted E3 ubiquitin 97.4 8.4E-05 1.8E-09 87.7 3.3 53 645-697 184-240 (513)
48 COG5113 UFD2 Ubiquitin fusion 97.3 0.00024 5.2E-09 84.9 5.4 76 639-716 846-922 (929)
49 KOG1222 Kinesin associated pro 97.3 0.015 3.1E-07 68.7 19.2 289 765-1102 300-599 (791)
50 PF14634 zf-RING_5: zinc-RING 97.3 0.00017 3.7E-09 59.1 2.5 41 649-690 1-44 (44)
51 KOG2122 Beta-catenin-binding p 97.2 0.0071 1.5E-07 78.2 17.0 306 784-1119 312-647 (2195)
52 COG5574 PEX10 RING-finger-cont 97.1 0.00024 5.2E-09 78.0 2.5 55 641-695 208-264 (271)
53 PF12678 zf-rbx1: RING-H2 zinc 97.0 0.00053 1.1E-08 62.4 3.3 43 645-689 18-73 (73)
54 KOG0297 TNF receptor-associate 97.0 0.00052 1.1E-08 80.8 4.1 70 641-712 15-86 (391)
55 KOG4159 Predicted E3 ubiquitin 96.9 0.00066 1.4E-08 79.6 4.2 72 642-714 79-154 (398)
56 KOG0978 E3 ubiquitin ligase in 96.8 0.00051 1.1E-08 84.6 2.2 54 644-697 640-693 (698)
57 PRK09687 putative lyase; Provi 96.6 0.12 2.7E-06 58.4 19.3 98 811-934 23-120 (280)
58 KOG4199 Uncharacterized conser 96.6 0.058 1.3E-06 61.8 16.1 171 760-948 274-453 (461)
59 KOG4500 Rho/Rac GTPase guanine 96.6 0.26 5.7E-06 58.1 21.6 253 745-1028 244-515 (604)
60 COG5222 Uncharacterized conser 96.5 0.0026 5.7E-08 70.5 4.8 66 648-714 275-342 (427)
61 PF05536 Neurochondrin: Neuroc 96.4 0.042 9.1E-07 67.6 15.0 149 774-935 10-169 (543)
62 KOG0824 Predicted E3 ubiquitin 96.2 0.0024 5.3E-08 71.4 2.6 50 648-697 8-57 (324)
63 KOG2122 Beta-catenin-binding p 96.2 0.03 6.5E-07 72.9 12.1 164 763-934 431-601 (2195)
64 PF10508 Proteasom_PSMB: Prote 96.2 0.82 1.8E-05 55.9 24.2 303 763-1098 113-438 (503)
65 PRK09687 putative lyase; Provi 96.2 0.55 1.2E-05 53.2 21.1 207 770-1059 55-262 (280)
66 PF00514 Arm: Armadillo/beta-c 96.2 0.0081 1.8E-07 48.2 4.7 39 801-839 2-40 (41)
67 KOG1813 Predicted E3 ubiquitin 96.2 0.003 6.5E-08 70.5 2.7 47 647-694 241-287 (313)
68 PRK13800 putative oxidoreducta 96.0 0.34 7.4E-06 63.1 20.7 82 990-1087 793-875 (897)
69 PF12861 zf-Apc11: Anaphase-pr 95.9 0.0056 1.2E-07 57.4 2.8 34 660-693 46-82 (85)
70 KOG2171 Karyopherin (importin) 95.9 1.2 2.6E-05 58.1 23.8 304 769-1097 118-478 (1075)
71 KOG0802 E3 ubiquitin ligase [P 95.9 0.0039 8.4E-08 76.4 2.1 48 644-692 288-340 (543)
72 KOG4628 Predicted E3 ubiquitin 95.8 0.0052 1.1E-07 70.8 2.6 47 648-694 230-279 (348)
73 KOG1002 Nucleotide excision re 95.7 0.0049 1.1E-07 72.8 1.9 52 644-695 533-588 (791)
74 KOG2160 Armadillo/beta-catenin 95.5 0.28 6.1E-06 56.8 15.1 146 780-934 94-240 (342)
75 KOG3039 Uncharacterized conser 95.4 0.0092 2E-07 65.1 2.7 39 641-679 37-75 (303)
76 PF00514 Arm: Armadillo/beta-c 95.3 0.018 4E-07 46.1 3.5 38 894-933 3-40 (41)
77 KOG0289 mRNA splicing factor [ 95.2 0.01 2.3E-07 69.1 2.4 48 648-696 1-49 (506)
78 COG5152 Uncharacterized conser 94.9 0.011 2.3E-07 62.8 1.3 45 647-692 196-240 (259)
79 PF04641 Rtf2: Rtf2 RING-finge 94.8 0.02 4.2E-07 64.1 3.0 53 643-697 109-165 (260)
80 PF13646 HEAT_2: HEAT repeats; 94.6 0.16 3.5E-06 46.1 8.1 86 813-929 1-87 (88)
81 KOG4367 Predicted Zn-finger pr 94.5 0.014 3.1E-07 67.6 1.1 35 645-679 2-36 (699)
82 PF03224 V-ATPase_H_N: V-ATPas 94.4 0.43 9.4E-06 54.5 12.9 155 770-934 56-227 (312)
83 KOG4646 Uncharacterized conser 94.4 0.16 3.5E-06 51.9 8.0 129 769-908 16-146 (173)
84 COG5540 RING-finger-containing 94.1 0.034 7.3E-07 62.5 2.9 47 648-694 324-373 (374)
85 KOG4500 Rho/Rac GTPase guanine 94.1 1.8 4E-05 51.4 16.8 297 766-1096 84-405 (604)
86 smart00185 ARM Armadillo/beta- 94.1 0.095 2.1E-06 40.9 4.7 38 802-839 3-40 (41)
87 KOG0946 ER-Golgi vesicle-tethe 94.1 14 0.0003 47.2 24.9 310 740-1081 41-401 (970)
88 COG5243 HRD1 HRD ubiquitin lig 94.0 0.04 8.6E-07 63.3 3.3 47 645-692 285-344 (491)
89 KOG3039 Uncharacterized conser 93.8 0.043 9.3E-07 60.1 3.0 53 644-697 218-274 (303)
90 PRK13800 putative oxidoreducta 93.6 6 0.00013 51.9 22.5 231 768-1075 651-895 (897)
91 PF05004 IFRD: Interferon-rela 93.6 4.6 9.9E-05 46.6 19.1 241 813-1110 45-292 (309)
92 KOG3678 SARM protein (with ste 93.5 4.1 8.9E-05 48.9 18.2 158 765-935 176-337 (832)
93 KOG0168 Putative ubiquitin fus 93.4 0.58 1.2E-05 59.1 11.9 159 769-941 211-371 (1051)
94 cd00256 VATPase_H VATPase_H, r 93.4 11 0.00024 45.6 22.3 181 770-961 102-285 (429)
95 KOG0804 Cytoplasmic Zn-finger 93.4 0.027 5.9E-07 66.1 0.7 46 645-693 173-222 (493)
96 KOG2171 Karyopherin (importin) 93.3 2.9 6.2E-05 54.7 18.1 210 815-1101 352-570 (1075)
97 KOG1060 Vesicle coat complex A 93.2 19 0.00041 46.1 24.0 163 880-1092 306-473 (968)
98 KOG0168 Putative ubiquitin fus 93.1 6.2 0.00013 50.5 19.8 140 782-935 181-324 (1051)
99 cd00256 VATPase_H VATPase_H, r 92.3 29 0.00062 42.1 23.7 157 769-934 53-216 (429)
100 PF13646 HEAT_2: HEAT repeats; 92.2 0.58 1.3E-05 42.4 7.6 84 771-884 1-86 (88)
101 KOG2979 Protein involved in DN 92.0 0.14 3E-06 56.8 3.8 46 646-691 175-222 (262)
102 KOG0828 Predicted E3 ubiquitin 91.9 0.1 2.3E-06 61.8 2.8 53 642-694 566-635 (636)
103 smart00185 ARM Armadillo/beta- 91.9 0.28 6E-06 38.3 4.4 38 894-933 3-40 (41)
104 KOG0826 Predicted E3 ubiquitin 91.7 0.14 3E-06 58.5 3.3 52 642-694 295-347 (357)
105 KOG2879 Predicted E3 ubiquitin 91.7 0.12 2.6E-06 57.7 2.8 49 645-693 237-287 (298)
106 KOG1222 Kinesin associated pro 91.6 1.2 2.5E-05 53.5 10.8 130 790-934 284-413 (791)
107 PF03224 V-ATPase_H_N: V-ATPas 91.5 1.7 3.7E-05 49.8 11.9 177 770-963 106-293 (312)
108 KOG2817 Predicted E3 ubiquitin 90.6 0.16 3.6E-06 59.2 2.7 46 644-689 331-381 (394)
109 PF01602 Adaptin_N: Adaptin N 90.4 15 0.00031 44.5 19.1 138 769-932 42-179 (526)
110 COG1413 FOG: HEAT repeat [Ener 89.5 9.5 0.00021 43.6 15.8 195 811-1074 43-237 (335)
111 PTZ00429 beta-adaptin; Provisi 89.4 80 0.0017 41.1 28.9 68 771-841 142-209 (746)
112 KOG3113 Uncharacterized conser 89.3 0.23 5E-06 54.9 2.4 53 642-697 106-162 (293)
113 KOG1645 RING-finger-containing 89.0 0.23 5E-06 58.1 2.2 60 647-707 4-69 (463)
114 KOG3161 Predicted E3 ubiquitin 88.3 0.3 6.5E-06 59.7 2.6 61 645-710 9-78 (861)
115 KOG3678 SARM protein (with ste 87.8 5.9 0.00013 47.6 12.5 118 806-935 175-294 (832)
116 KOG0825 PHD Zn-finger protein 87.1 0.21 4.5E-06 62.0 0.4 49 646-695 122-173 (1134)
117 TIGR02270 conserved hypothetic 86.6 83 0.0018 38.1 22.3 122 769-934 54-176 (410)
118 KOG3800 Predicted E3 ubiquitin 86.6 0.41 8.8E-06 54.0 2.3 48 649-696 2-54 (300)
119 KOG1293 Proteins containing ar 86.3 7.3 0.00016 48.6 12.6 119 765-890 415-533 (678)
120 KOG1785 Tyrosine kinase negati 85.6 0.36 7.9E-06 56.1 1.3 48 649-696 371-419 (563)
121 KOG1039 Predicted E3 ubiquitin 85.4 0.52 1.1E-05 55.0 2.4 50 645-694 159-222 (344)
122 PF12348 CLASP_N: CLASP N term 85.2 14 0.00029 39.9 13.1 110 811-936 94-208 (228)
123 PTZ00429 beta-adaptin; Provisi 85.0 1.4E+02 0.0029 39.0 24.5 139 772-935 71-209 (746)
124 KOG1493 Anaphase-promoting com 84.6 0.33 7.2E-06 44.8 0.3 33 660-692 45-80 (84)
125 PF02891 zf-MIZ: MIZ/SP-RING z 84.6 0.72 1.6E-05 39.3 2.4 44 648-691 3-50 (50)
126 smart00744 RINGv The RING-vari 84.6 0.88 1.9E-05 38.6 2.8 41 649-689 1-49 (49)
127 COG5096 Vesicle coat complex, 84.1 1.4E+02 0.003 38.9 22.7 275 774-1106 60-346 (757)
128 KOG1001 Helicase-like transcri 83.3 0.4 8.6E-06 60.5 0.4 47 648-695 455-502 (674)
129 KOG1734 Predicted RING-contain 83.2 0.27 5.8E-06 54.8 -1.0 48 646-693 223-281 (328)
130 KOG0827 Predicted E3 ubiquitin 83.1 0.85 1.9E-05 53.2 2.8 52 645-696 2-59 (465)
131 PF14664 RICTOR_N: Rapamycin-i 81.3 11 0.00025 44.6 11.3 153 741-914 44-199 (371)
132 KOG1062 Vesicle coat complex A 80.9 32 0.0007 44.2 15.2 160 773-939 354-549 (866)
133 TIGR02270 conserved hypothetic 80.6 40 0.00086 40.7 15.6 56 771-838 119-174 (410)
134 PF05536 Neurochondrin: Neuroc 80.4 43 0.00094 41.8 16.3 239 812-1080 6-262 (543)
135 KOG1293 Proteins containing ar 80.3 27 0.00059 43.9 14.2 136 804-954 412-548 (678)
136 KOG1517 Guanine nucleotide bin 79.5 22 0.00047 46.8 13.3 159 767-935 510-672 (1387)
137 PF11793 FANCL_C: FANCL C-term 78.9 0.53 1.2E-05 42.7 -0.5 47 647-693 2-66 (70)
138 KOG0883 Cyclophilin type, U bo 78.7 1.5 3.2E-05 51.2 2.8 50 647-697 40-89 (518)
139 PF14664 RICTOR_N: Rapamycin-i 77.7 47 0.001 39.6 14.9 146 781-948 37-184 (371)
140 COG5109 Uncharacterized conser 77.6 1.4 3.1E-05 50.2 2.3 48 643-690 332-384 (396)
141 KOG2611 Neurochondrin/leucine- 76.5 59 0.0013 39.9 14.9 157 774-941 16-190 (698)
142 KOG4692 Predicted E3 ubiquitin 76.5 1.1 2.4E-05 51.6 1.0 48 646-694 421-468 (489)
143 COG1413 FOG: HEAT repeat [Ener 75.8 27 0.00059 39.9 12.1 124 769-935 74-210 (335)
144 KOG1571 Predicted E3 ubiquitin 75.4 1.7 3.8E-05 50.5 2.2 48 641-692 299-346 (355)
145 COG5219 Uncharacterized conser 75.3 1.8 3.9E-05 55.3 2.4 46 647-692 1469-1522(1525)
146 KOG4185 Predicted E3 ubiquitin 75.2 2.6 5.6E-05 47.8 3.6 63 648-711 4-77 (296)
147 KOG0298 DEAD box-containing he 74.7 1.2 2.7E-05 58.5 0.9 48 642-690 1148-1196(1394)
148 PF04641 Rtf2: Rtf2 RING-finge 73.2 3.3 7.2E-05 46.5 3.8 38 644-681 31-69 (260)
149 KOG4362 Transcriptional regula 73.0 1.4 2.9E-05 55.3 0.6 69 644-713 18-88 (684)
150 PF05004 IFRD: Interferon-rela 73.0 88 0.0019 36.3 15.2 152 770-933 87-256 (309)
151 PF14570 zf-RING_4: RING/Ubox 72.4 2.7 6E-05 35.8 2.1 43 650-692 1-47 (48)
152 PF01602 Adaptin_N: Adaptin N 72.1 24 0.00051 42.7 10.9 154 770-935 115-297 (526)
153 KOG4646 Uncharacterized conser 71.3 16 0.00034 38.1 7.5 84 760-845 49-132 (173)
154 COG5194 APC11 Component of SCF 70.9 3.2 7E-05 38.8 2.4 44 649-693 33-81 (88)
155 COG5175 MOT2 Transcriptional r 70.8 2.8 6.2E-05 48.2 2.5 50 645-695 13-66 (480)
156 PF09759 Atx10homo_assoc: Spin 69.6 16 0.00035 35.9 7.0 68 786-855 3-72 (102)
157 PF13513 HEAT_EZ: HEAT-like re 69.5 6.4 0.00014 33.1 3.8 53 877-932 3-55 (55)
158 PF12348 CLASP_N: CLASP N term 68.4 87 0.0019 33.7 13.2 72 1005-1080 133-207 (228)
159 KOG4172 Predicted E3 ubiquitin 67.9 2 4.4E-05 37.5 0.4 45 649-693 9-54 (62)
160 KOG0212 Uncharacterized conser 65.9 1.2E+02 0.0026 38.1 14.5 154 896-1079 77-237 (675)
161 COG5627 MMS21 DNA repair prote 64.6 4.4 9.5E-05 44.8 2.3 57 647-704 189-249 (275)
162 PLN02189 cellulose synthase 62.3 4.5 9.8E-05 53.0 2.2 45 649-693 36-87 (1040)
163 KOG2259 Uncharacterized conser 60.9 2.1E+02 0.0046 36.6 15.6 221 862-1102 199-470 (823)
164 PLN02195 cellulose synthase A 60.4 5.6 0.00012 51.9 2.5 45 649-693 8-59 (977)
165 PF14569 zf-UDP: Zinc-binding 60.0 8.7 0.00019 35.9 3.0 46 648-693 10-62 (80)
166 PLN02638 cellulose synthase A 59.4 5.5 0.00012 52.5 2.2 45 649-693 19-70 (1079)
167 PF11698 V-ATPase_H_C: V-ATPas 58.8 27 0.00059 35.3 6.5 47 793-839 68-114 (119)
168 PLN02436 cellulose synthase A 58.4 5.7 0.00012 52.2 2.1 45 649-693 38-89 (1094)
169 KOG0213 Splicing factor 3b, su 58.2 1.7E+02 0.0038 37.8 14.2 249 813-1081 801-1067(1172)
170 KOG4265 Predicted E3 ubiquitin 57.1 6.3 0.00014 46.0 2.0 48 646-694 289-337 (349)
171 KOG1517 Guanine nucleotide bin 56.9 33 0.00071 45.3 8.1 191 812-1037 473-673 (1387)
172 PF08045 CDC14: Cell division 56.2 74 0.0016 36.2 10.1 101 827-935 107-208 (257)
173 PF14447 Prok-RING_4: Prokaryo 54.9 7 0.00015 34.3 1.5 47 647-696 7-53 (55)
174 KOG0946 ER-Golgi vesicle-tethe 54.8 3.3E+02 0.0071 35.7 16.0 142 765-914 118-265 (970)
175 PF13513 HEAT_EZ: HEAT-like re 51.6 37 0.0008 28.5 5.3 53 785-838 3-55 (55)
176 KOG0396 Uncharacterized conser 51.5 10 0.00023 44.5 2.6 50 645-694 328-380 (389)
177 PF12755 Vac14_Fab1_bd: Vacuol 50.6 86 0.0019 30.4 8.3 54 1046-1102 24-77 (97)
178 KOG1814 Predicted E3 ubiquitin 50.4 16 0.00035 43.5 3.9 62 644-710 181-252 (445)
179 KOG2973 Uncharacterized conser 50.2 78 0.0017 37.0 9.0 107 813-934 5-111 (353)
180 PF08045 CDC14: Cell division 48.4 1.1E+02 0.0024 34.8 9.9 81 761-841 125-208 (257)
181 PF06371 Drf_GBD: Diaphanous G 47.4 62 0.0013 33.7 7.4 76 764-839 102-186 (187)
182 cd03561 VHS VHS domain family; 47.2 80 0.0017 31.9 7.9 72 769-840 37-112 (133)
183 PLN02915 cellulose synthase A 47.0 11 0.00024 49.6 2.1 46 648-693 16-68 (1044)
184 KOG1940 Zn-finger protein [Gen 46.8 14 0.0003 42.3 2.6 43 647-690 158-204 (276)
185 KOG1941 Acetylcholine receptor 46.7 9.6 0.00021 44.9 1.3 45 646-690 364-413 (518)
186 KOG0212 Uncharacterized conser 46.6 77 0.0017 39.6 8.7 117 991-1115 26-151 (675)
187 PF04063 DUF383: Domain of unk 46.0 1.2E+02 0.0025 33.1 9.3 77 812-893 53-135 (192)
188 KOG2734 Uncharacterized conser 44.8 3E+02 0.0064 33.9 12.9 143 807-962 121-278 (536)
189 cd03568 VHS_STAM VHS domain fa 44.7 83 0.0018 32.6 7.6 72 769-840 37-110 (144)
190 PF10165 Ric8: Guanine nucleot 44.6 4.2E+02 0.0091 32.4 14.8 167 761-933 14-217 (446)
191 PF02985 HEAT: HEAT repeat; I 44.3 37 0.00081 25.7 3.8 27 813-839 2-28 (31)
192 KOG2930 SCF ubiquitin ligase, 43.5 17 0.00036 35.8 2.2 27 664-691 80-106 (114)
193 KOG1242 Protein containing ada 42.8 3.1E+02 0.0067 34.7 13.1 157 771-932 256-442 (569)
194 PLN02400 cellulose synthase 42.4 11 0.00024 49.8 1.1 45 649-693 38-89 (1085)
195 cd03569 VHS_Hrs_Vps27p VHS dom 42.3 95 0.0021 32.0 7.6 71 769-839 41-113 (142)
196 KOG3002 Zn finger protein [Gen 41.8 25 0.00054 40.7 3.7 64 641-712 42-106 (299)
197 PF14353 CpXC: CpXC protein 40.8 13 0.00029 37.1 1.2 47 647-693 1-49 (128)
198 PF11841 DUF3361: Domain of un 40.7 3E+02 0.0064 29.4 11.0 116 764-888 6-129 (160)
199 KOG2114 Vacuolar assembly/sort 40.5 13 0.00029 47.6 1.4 42 645-690 838-880 (933)
200 cd03567 VHS_GGA VHS domain fam 40.2 1.1E+02 0.0024 31.6 7.7 71 769-839 38-115 (139)
201 KOG1789 Endocytosis protein RM 39.4 1.4E+02 0.003 40.1 9.6 110 769-889 1771-1882(2235)
202 PRK11088 rrmA 23S rRNA methylt 38.5 13 0.00028 41.7 0.7 27 647-673 2-31 (272)
203 PF00790 VHS: VHS domain; Int 38.2 1.5E+02 0.0032 30.3 8.2 72 769-840 42-118 (140)
204 PF05290 Baculo_IE-1: Baculovi 38.1 29 0.00063 35.7 3.1 50 646-695 79-134 (140)
205 PHA02825 LAP/PHD finger-like p 38.0 36 0.00078 36.0 3.8 49 645-694 6-60 (162)
206 PF13764 E3_UbLigase_R4: E3 ub 37.0 3E+02 0.0064 36.4 12.4 77 763-840 111-200 (802)
207 KOG2759 Vacuolar H+-ATPase V1 36.3 49 0.0011 39.8 5.0 70 770-839 367-437 (442)
208 PF11701 UNC45-central: Myosin 36.1 1E+02 0.0022 32.1 6.9 135 782-930 18-155 (157)
209 KOG4275 Predicted E3 ubiquitin 35.5 6.9 0.00015 44.6 -1.9 42 646-692 299-341 (350)
210 PF10367 Vps39_2: Vacuolar sor 35.3 13 0.00029 35.2 0.2 35 641-675 72-108 (109)
211 KOG2734 Uncharacterized conser 35.0 4.6E+02 0.01 32.4 12.5 158 765-933 172-345 (536)
212 KOG1240 Protein kinase contain 33.4 9.5E+02 0.021 33.3 15.8 128 816-958 427-558 (1431)
213 KOG4718 Non-SMC (structural ma 33.1 27 0.00059 38.4 2.0 46 648-694 182-228 (235)
214 smart00288 VHS Domain present 32.1 1.8E+02 0.0039 29.5 7.7 71 769-839 37-110 (133)
215 KOG0314 Predicted E3 ubiquitin 31.9 24 0.00051 42.9 1.5 68 642-712 214-285 (448)
216 PF02985 HEAT: HEAT repeat; I 31.0 58 0.0013 24.6 3.0 29 1050-1079 1-29 (31)
217 KOG0825 PHD Zn-finger protein 29.9 37 0.00081 43.4 2.7 50 641-690 90-151 (1134)
218 COG5096 Vesicle coat complex, 29.4 2.2E+02 0.0047 37.2 9.3 99 773-889 96-194 (757)
219 PF10272 Tmpp129: Putative tra 29.2 41 0.00089 39.9 2.8 34 662-695 303-353 (358)
220 PF12717 Cnd1: non-SMC mitotic 28.8 1.5E+02 0.0033 31.3 6.8 68 769-841 25-93 (178)
221 cd00730 rubredoxin Rubredoxin; 28.6 26 0.00056 30.2 0.8 19 637-655 24-42 (50)
222 COG5220 TFB3 Cdk activating ki 28.4 13 0.00029 41.2 -1.1 47 646-692 9-63 (314)
223 KOG1241 Karyopherin (importin) 28.2 6.8E+02 0.015 32.9 12.9 151 768-934 318-477 (859)
224 PF09759 Atx10homo_assoc: Spin 27.8 1.3E+02 0.0028 29.7 5.6 52 759-810 18-71 (102)
225 KOG2034 Vacuolar sorting prote 27.7 30 0.00066 44.8 1.5 39 641-679 811-851 (911)
226 PF12719 Cnd3: Nuclear condens 27.0 3.3E+02 0.0072 31.1 9.6 108 776-888 34-141 (298)
227 PF00301 Rubredoxin: Rubredoxi 26.8 26 0.00057 29.8 0.6 18 637-654 24-41 (47)
228 PF11701 UNC45-central: Myosin 26.8 1.2E+02 0.0026 31.6 5.5 70 765-836 82-155 (157)
229 KOG2534 DNA polymerase IV (fam 26.2 5.4E+02 0.012 30.5 10.7 119 259-411 16-148 (353)
230 PF12719 Cnd3: Nuclear condens 26.2 2.8E+02 0.006 31.7 8.8 105 818-937 34-148 (298)
231 PF06416 DUF1076: Protein of u 25.0 54 0.0012 32.8 2.3 53 643-696 36-94 (113)
232 PRK06266 transcription initiat 24.7 79 0.0017 34.0 3.8 52 645-712 115-166 (178)
233 KOG1061 Vesicle coat complex A 24.6 1.4E+03 0.03 30.0 14.8 70 771-843 123-192 (734)
234 KOG1824 TATA-binding protein-i 24.1 1.8E+03 0.04 30.1 15.7 44 1062-1106 1078-1125(1233)
235 PF11841 DUF3361: Domain of un 24.0 4E+02 0.0086 28.5 8.6 60 782-841 73-132 (160)
236 KOG1062 Vesicle coat complex A 24.0 4.3E+02 0.0093 34.7 10.3 61 815-890 354-414 (866)
237 PF12755 Vac14_Fab1_bd: Vacuol 23.8 2.1E+02 0.0047 27.7 6.2 32 812-843 28-59 (97)
238 PF05883 Baculo_RING: Baculovi 23.3 49 0.0011 34.1 1.8 44 647-691 26-78 (134)
239 PF12397 U3snoRNP10: U3 small 23.2 3.3E+02 0.0072 26.7 7.7 86 1003-1100 6-92 (121)
240 PF06371 Drf_GBD: Diaphanous G 22.7 1.9E+02 0.0041 30.1 6.1 107 812-933 67-186 (187)
241 PF05605 zf-Di19: Drought indu 22.5 95 0.0021 26.6 3.2 33 646-690 1-39 (54)
242 PHA02862 5L protein; Provision 21.7 81 0.0018 33.0 3.0 46 649-695 4-55 (156)
243 PF14446 Prok-RING_1: Prokaryo 21.7 58 0.0013 28.7 1.7 27 647-673 5-35 (54)
244 PHA03096 p28-like protein; Pro 21.6 63 0.0014 37.2 2.5 43 648-690 179-231 (284)
245 PF08167 RIX1: rRNA processing 21.6 9.5E+02 0.021 25.2 11.2 67 774-843 30-100 (165)
246 KOG3036 Protein involved in ce 21.6 1.3E+03 0.028 26.7 13.2 97 741-842 144-249 (293)
247 cd00350 rubredoxin_like Rubred 21.0 66 0.0014 25.1 1.7 11 681-691 16-26 (33)
No 1
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.74 E-value=1.3e-18 Score=156.63 Aligned_cols=72 Identities=43% Similarity=0.792 Sum_probs=63.0
Q ss_pred CCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHhcc
Q 041480 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSENC 716 (1122)
Q Consensus 644 ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~n~ 716 (1122)
+|++|+||||++||.|||++++||||||.+|++|+.+++.+||+|++++.... +.||..||..|+.|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~-l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESD-LIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGG-SEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCccc-ceECHHHHHHHHHHHHHcc
Confidence 69999999999999999999999999999999999998999999999999988 5999999999999998874
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.71 E-value=1.7e-15 Score=198.40 Aligned_cols=341 Identities=17% Similarity=0.129 Sum_probs=235.1
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHh-hccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHH
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLIS-IGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLE 818 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~Ias-aGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~ 818 (1122)
+.++..|+.|.+.. .+||..|+. .|+||.|+.+|.+++.+.|+.++++|.+++. ++++|..|+..|+|+|||+
T Consensus 33 ~~Al~~Lr~Lak~~-----~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~-~e~nk~~Iv~~GaIppLV~ 106 (2102)
T PLN03200 33 ELTTARLLELAKTR-----EEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCK-EEDLRVKVLLGGCIPPLLS 106 (2102)
T ss_pred HHHHHHHHHHHhcC-----hHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHH
Confidence 45667777777543 368999986 7999999999999999999999999999986 5789999999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHccc--C-cc-------chHH-HHHhhhh-----------------------h------h
Q 041480 819 LLHSKQVKPRTNTVLLLIDLICLS--R-RR-------DVST-LLRNVQN-----------------------E------E 858 (1122)
Q Consensus 819 LL~SGs~~aRenAv~aL~eLs~~~--~-~k-------~~~~-~L~~I~~-----------------------e------G 858 (1122)
+|.+|+.++|++|+.+|++|+..+ + ++ ++.. ++..+.. + -
T Consensus 107 LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~II 186 (2102)
T PLN03200 107 LLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATL 186 (2102)
T ss_pred HHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHH
Confidence 999999999999999999999763 1 11 0010 1110000 0 0
Q ss_pred hhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCC
Q 041480 859 LVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSF 938 (1122)
Q Consensus 859 ~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~ 938 (1122)
..|++++|+.+|+++++..|..|+.+|.+++...+..+..++++|+|+.||.+|+++... .+|+.|+.||.+|+++
T Consensus 187 eaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~-~VRE~AA~AL~nLAs~--- 262 (2102)
T PLN03200 187 EAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEV-SVRAEAAGALEALSSQ--- 262 (2102)
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCCh-HHHHHHHHHHHHHhcC---
Confidence 257999999999999999999999999999876566888999999999999999887653 6899999999999974
Q ss_pred CchhhhhhhhhccccccccccccCCCC----------------------------------------C------------
Q 041480 939 SREVANESWILKPAGFNDRCEGNSLDN----------------------------------------D------------ 966 (1122)
Q Consensus 939 sGe~~~~~~LlK~AG~~~~~~~~~~~~----------------------------------------~------------ 966 (1122)
.+..+..+++.+|+......+.... .
T Consensus 263 --s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gA 340 (2102)
T PLN03200 263 --SKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGA 340 (2102)
T ss_pred --CHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhh
Confidence 2333444445444422111110000 0
Q ss_pred ---------CCCC---CCC-------------CCCCCchhHHhHH---------------------------------HH
Q 041480 967 ---------ENDL---PVD-------------DSTPLDDEEQASE---------------------------------EW 988 (1122)
Q Consensus 967 ---------~~d~---~~d-------------~~~~~~~ee~~~~---------------------------------~w 988 (1122)
.++. .++ +.......+.+.+ +-
T Consensus 341 Layll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~ev 420 (2102)
T PLN03200 341 LAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADV 420 (2102)
T ss_pred HHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHH
Confidence 0000 000 0000000000000 01
Q ss_pred HHHhH--------------HHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHH
Q 041480 989 LRKLS--------------ASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQL 1054 (1122)
Q Consensus 989 ~rk~a--------------~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~L 1054 (1122)
+.+.+ ..+++.|+ +..|.+.|++++..+...+ +|....|+...+...+.++..+.||+|
T Consensus 421 Q~~Av~aL~~L~~~~~e~~~aIi~~gg---Ip~LV~LL~s~s~~iQ~~A----~~~L~nLa~~ndenr~aIieaGaIP~L 493 (2102)
T PLN03200 421 QEELIRALSSLCCGKGGLWEALGGREG---VQLLISLLGLSSEQQQEYA----VALLAILTDEVDESKWAITAAGGIPPL 493 (2102)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHcCc---HHHHHHHHcCCCHHHHHHH----HHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 11111 22334444 5667777888888777766 788888887666557889999999999
Q ss_pred HHhhcCCCChhhHHHHHHHhhhhhCCcchhhhHHHHhhHhHHHhhhh
Q 041480 1055 KEILQNGEQPQQKVLASMSLLNFSKIPECGAVLKTIAAEIRIPLQSL 1101 (1122)
Q Consensus 1055 v~~L~~~~~~eer~LA~~aL~~~~~~~~~~~~L~~~a~gi~~~Lr~L 1101 (1122)
+++|.+++ ..-|.-|+.+|.|++.++...+.++ ...|+.++|-++
T Consensus 494 V~LL~s~~-~~iqeeAawAL~NLa~~~~qir~iV-~~aGAIppLV~L 538 (2102)
T PLN03200 494 VQLLETGS-QKAKEDSATVLWNLCCHSEDIRACV-ESAGAVPALLWL 538 (2102)
T ss_pred HHHHcCCC-HHHHHHHHHHHHHHhCCcHHHHHHH-HHCCCHHHHHHH
Confidence 99999664 5788889999999999864434432 344666665444
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.67 E-value=9.5e-15 Score=191.61 Aligned_cols=309 Identities=16% Similarity=0.099 Sum_probs=224.7
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHH
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLEL 819 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~L 819 (1122)
..++..|.-|... +.+|+..|+..|+||.|+++|.+++.+.|+.|+.+|.+++..+.++|..|.+.|++++|+++
T Consensus 464 ~~A~~~L~nLa~~-----ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~L 538 (2102)
T PLN03200 464 EYAVALLAILTDE-----VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL 538 (2102)
T ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHH
Confidence 3455556555432 23578899999999999999999999999999999999987666778888888999999999
Q ss_pred hhcCChhHHHHHHHHHHHHHcccCccc------------------hHHHHHhhh---------hhh--hhhhHHHHHHHh
Q 041480 820 LHSKQVKPRTNTVLLLIDLICLSRRRD------------------VSTLLRNVQ---------NEE--LVNAMHVLLLYL 870 (1122)
Q Consensus 820 L~SGs~~aRenAv~aL~eLs~~~~~k~------------------~~~~L~~I~---------~eG--~~gaI~~Ll~lL 870 (1122)
|.+++.+.|++|+.+|.+|+...++.. +...+..|. ..| ..|+++.|+.++
T Consensus 539 L~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL 618 (2102)
T PLN03200 539 LKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL 618 (2102)
T ss_pred HhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH
Confidence 999999999999999999975433210 011111111 111 258999999999
Q ss_pred hcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhc
Q 041480 871 QRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILK 950 (1122)
Q Consensus 871 qsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK 950 (1122)
++++...+..|+.+|.+++.....+...++.+|+|++||.+|..+.+ ..+..|+.||.+|... |..-.+..+ -
T Consensus 619 ~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~--~v~keAA~AL~nL~~~----~~~~q~~~~-v 691 (2102)
T PLN03200 619 SSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTE--AVATQSARALAALSRS----IKENRKVSY-A 691 (2102)
T ss_pred cCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCh--HHHHHHHHHHHHHHhC----CCHHHHHHH-H
Confidence 99999999999999999998766677889999999999999998887 4899999999999952 333222233 4
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHH---H--HhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHH
Q 041480 951 PAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWL---R--KLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLT 1025 (1122)
Q Consensus 951 ~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~---r--k~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~ 1025 (1122)
++|..+++-.+.... + ...+ +.++.... + ..+..+..+|. +..|.+.|++|+.+....+
T Consensus 692 ~~GaV~pL~~LL~~~-d-~~v~---------e~Al~ALanLl~~~e~~~ei~~~~~---I~~Lv~lLr~G~~~~k~~A-- 755 (2102)
T PLN03200 692 AEDAIKPLIKLAKSS-S-IEVA---------EQAVCALANLLSDPEVAAEALAEDI---ILPLTRVLREGTLEGKRNA-- 755 (2102)
T ss_pred HcCCHHHHHHHHhCC-C-hHHH---------HHHHHHHHHHHcCchHHHHHHhcCc---HHHHHHHHHhCChHHHHHH--
Confidence 677777766543211 1 0111 11121111 1 13345566665 7889999999999999888
Q ss_pred HHHHHHhhhccCCCch--h-hHhhHHHhHHHHHHhhcCCCChhhHHH--HHHHhhhhhC
Q 041480 1026 TVAWLSHALSAQPDAE--F-QLSAFSAVISQLKEILQNGEQPQQKVL--ASMSLLNFSK 1079 (1122)
Q Consensus 1026 t~aWl~~~L~~~~~t~--~-~~~A~~~ll~~Lv~~L~~~~~~eer~L--A~~aL~~~~~ 1079 (1122)
+|....|....+.+ + .++.|.+.+.+|+.+|.+ -+.+.-.- |.=+|.++.+
T Consensus 756 --a~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~-~~~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 756 --ARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS-TDLDSSATSEALEALALLAR 811 (2102)
T ss_pred --HHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc-CCcchhhHHHHHHHHHHHHh
Confidence 88888888776632 4 899999999999999994 33443332 4444444444
No 4
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.53 E-value=6.6e-15 Score=127.59 Aligned_cols=63 Identities=40% Similarity=0.798 Sum_probs=59.4
Q ss_pred cccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHH
Q 041480 647 DFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGW 711 (1122)
Q Consensus 647 ef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w 711 (1122)
+|.||||+++|+|||+++|||+|||.||.+|+.+ +.+||+|+++++... +++|..|++.|+.|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~-l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHED-LIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhh-ceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 679999999998888 59999999999988
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=5.5e-12 Score=140.71 Aligned_cols=250 Identities=20% Similarity=0.193 Sum_probs=180.2
Q ss_pred hhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhcc--chHHHHHHhhcCChhHHHHHHHHHHH
Q 041480 760 TNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNI--NVYSLLELLHSKQVKPRTNTVLLLID 837 (1122)
Q Consensus 760 ~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~G--aI~pLV~LL~SGs~~aRenAv~aL~e 837 (1122)
+||+.++.+|++|+||.+|.+++.+.|..+...|.+++. |..+|+.+++.+ .++.||.|...|+.++|..|..+|.+
T Consensus 199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhh
Confidence 699999999999999999999999999999999998875 788999999987 89999999999999999999999999
Q ss_pred HHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCC
Q 041480 838 LICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLT 917 (1122)
Q Consensus 838 Ls~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~ 917 (1122)
|+...++. ..|++ .|+++.|+.+||+...-.-...+.-+.|++. ++-|..-|+++|...+||.+|+.+..
T Consensus 278 lasdt~Yq------~eiv~---ag~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~~~dn 347 (550)
T KOG4224|consen 278 LASDTEYQ------REIVE---AGSLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLRAGDN 347 (550)
T ss_pred hcccchhh------hHHHh---cCCchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHhcCCc
Confidence 98776653 33443 4899999999985432222333344777877 45588899999999999999999987
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHh
Q 041480 918 DEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLL 997 (1122)
Q Consensus 918 ~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv 997 (1122)
+..|-.|..+|.+|++. +..+ +.. ..++|..+.+.. |+
T Consensus 348 -EeiqchAvstLrnLAas---se~n--~~~-i~esgAi~kl~e-----------------------------------L~ 385 (550)
T KOG4224|consen 348 -EEIQCHAVSTLRNLAAS---SEHN--VSV-IRESGAIPKLIE-----------------------------------LL 385 (550)
T ss_pred -hhhhhhHHHHHHHHhhh---hhhh--hHH-HhhcCchHHHHH-----------------------------------HH
Confidence 46899999999999984 2211 222 244554444333 22
Q ss_pred cCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhh
Q 041480 998 GNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNF 1077 (1122)
Q Consensus 998 ~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~ 1077 (1122)
-.|-..|=+.+ .+|+..++ +.|+.....-..+++|-|+.++.+ ...|-|=-|+-+|-||
T Consensus 386 lD~pvsvqsei------------sac~a~La--------l~d~~k~~lld~gi~~iLIp~t~s-~s~Ev~gNaAaAL~Nl 444 (550)
T KOG4224|consen 386 LDGPVSVQSEI------------SACIAQLA--------LNDNDKEALLDSGIIPILIPWTGS-ESEEVRGNAAAALINL 444 (550)
T ss_pred hcCChhHHHHH------------HHHHHHHH--------hccccHHHHhhcCCcceeecccCc-cchhhcccHHHHHHhh
Confidence 22222232333 44543322 233334444555667777777773 3355666777788888
Q ss_pred hCCcch
Q 041480 1078 SKIPEC 1083 (1122)
Q Consensus 1078 ~~~~~~ 1083 (1122)
+++-+.
T Consensus 445 ss~v~~ 450 (550)
T KOG4224|consen 445 SSDVEH 450 (550)
T ss_pred hhhhHH
Confidence 877433
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.9e-11 Score=136.47 Aligned_cols=297 Identities=15% Similarity=0.158 Sum_probs=219.2
Q ss_pred hhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHH
Q 041480 759 ITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDL 838 (1122)
Q Consensus 759 ~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eL 838 (1122)
..|+..|++.+++.+|+.-......+.|-.++.-|.+++.. +++|..|+..|++.|+.+|-.+.+...|-||..+|.++
T Consensus 116 ~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnm 194 (550)
T KOG4224|consen 116 MENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNM 194 (550)
T ss_pred cCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHh
Confidence 45788899999999888777666667777788888888876 58999999999999999988999999999999999999
Q ss_pred HcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhc--cHHHHHHHHhccC
Q 041480 839 ICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREA--AVDAITVALEESL 916 (1122)
Q Consensus 839 s~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReG--AV~aLV~LL~~g~ 916 (1122)
....+++.. ++ ..|+++.|+.++.+|.++.|--+..++-+++.. +.+|..+++.| .|+.||.++..++
T Consensus 195 Ths~EnRr~------LV---~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s 264 (550)
T KOG4224|consen 195 THSRENRRV------LV---HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGS 264 (550)
T ss_pred hhhhhhhhh------hh---ccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCC
Confidence 988776522 23 358999999999999999999999999999874 56888899988 9999999999887
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHH-HhH--
Q 041480 917 TDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLR-KLS-- 993 (1122)
Q Consensus 917 ~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~r-k~a-- 993 (1122)
. ++|-+|..||-+|+.. +.|-+. +.+||-.+.|..+.++... -...++..|. +++
T Consensus 265 ~--kvkcqA~lALrnlasd-----t~Yq~e--iv~ag~lP~lv~Llqs~~~-------------plilasVaCIrnisih 322 (550)
T KOG4224|consen 265 D--KVKCQAGLALRNLASD-----TEYQRE--IVEAGSLPLLVELLQSPMG-------------PLILASVACIRNISIH 322 (550)
T ss_pred h--HHHHHHHHHHhhhccc-----chhhhH--HHhcCCchHHHHHHhCcch-------------hHHHHHHHHHhhcccc
Confidence 5 8999999999999963 333333 3567776877765432111 1233455563 333
Q ss_pred ---HHHh-cCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhc-CCCChhhHH
Q 041480 994 ---ASLL-GNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQ-NGEQPQQKV 1068 (1122)
Q Consensus 994 ---~~Lv-~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~-~~~~~eer~ 1068 (1122)
++|| ..| ||..|+..|+.+.-+-++.--+..-| -|....+-.++..-.++.||.|+.++- ..-.+.+++
T Consensus 323 plNe~lI~dag---fl~pLVrlL~~~dnEeiqchAvstLr---nLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei 396 (550)
T KOG4224|consen 323 PLNEVLIADAG---FLRPLVRLLRAGDNEEIQCHAVSTLR---NLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI 396 (550)
T ss_pred cCcccceeccc---chhHHHHHHhcCCchhhhhhHHHHHH---HHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence 2333 555 47778888888777754443333232 233323323666777889999998765 455677999
Q ss_pred HHHHHhhhhhCCcchhhhHHHHhhHhHHHh
Q 041480 1069 LASMSLLNFSKIPECGAVLKTIAAEIRIPL 1098 (1122)
Q Consensus 1069 LA~~aL~~~~~~~~~~~~L~~~a~gi~~~L 1098 (1122)
-||++.+.|... -+.-| ++.||+.-|
T Consensus 397 sac~a~Lal~d~--~k~~l--ld~gi~~iL 422 (550)
T KOG4224|consen 397 SACIAQLALNDN--DKEAL--LDSGIIPIL 422 (550)
T ss_pred HHHHHHHHhccc--cHHHH--hhcCCccee
Confidence 999999988764 23333 566666554
No 7
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.24 E-value=6.7e-10 Score=136.67 Aligned_cols=301 Identities=18% Similarity=0.207 Sum_probs=214.8
Q ss_pred hhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHH
Q 041480 759 ITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDL 838 (1122)
Q Consensus 759 ~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eL 838 (1122)
..+...|+..|.|+.||++|+.++.+...-++..|-+++. ..+||..+++.|.+++|+.+|.+++......|+.+|++|
T Consensus 280 ~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NL 358 (708)
T PF05804_consen 280 PRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNL 358 (708)
T ss_pred hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 4577788999999999999999999988889999999987 557999999999999999999999999999999999999
Q ss_pred HcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCC
Q 041480 839 ICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTD 918 (1122)
Q Consensus 839 s~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~ 918 (1122)
+.+++.+. .++ ..|.++.|+.+|.. +..+..+..+|+||+.. +..|..+...++|+.|+.+|-.+...
T Consensus 359 Sfd~~~R~------~mV---~~GlIPkLv~LL~d--~~~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~~ 426 (708)
T PF05804_consen 359 SFDPELRS------QMV---SLGLIPKLVELLKD--PNFREVALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSEE 426 (708)
T ss_pred CcCHHHHH------HHH---HCCCcHHHHHHhCC--CchHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCCc
Confidence 97766441 223 35889999999985 55677788999999995 55898899999999999998776543
Q ss_pred hHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHH--H
Q 041480 919 EKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSAS--L 996 (1122)
Q Consensus 919 ~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~--L 996 (1122)
.++..+...+.||+.. ...+ ..+.+..|+...... - +.+.|..+ --..|+++.. -
T Consensus 427 -~v~~eliaL~iNLa~~-----~rna-qlm~~g~gL~~L~~r-a--~~~~D~lL-------------lKlIRNiS~h~~~ 483 (708)
T PF05804_consen 427 -EVQLELIALLINLALN-----KRNA-QLMCEGNGLQSLMKR-A--LKTRDPLL-------------LKLIRNISQHDGP 483 (708)
T ss_pred -cccHHHHHHHHHHhcC-----HHHH-HHHHhcCcHHHHHHH-H--HhcccHHH-------------HHHHHHHHhcCch
Confidence 4566667778888853 2222 234455555332222 1 11112110 0011111100 0
Q ss_pred hcCCchhhHHHHHHhhcc-CCchhHHHHHHHHHHHHhhhccCCCchhhHhh-HHHhHHHHHHhhcCCCChhhHHHHHH-H
Q 041480 997 LGNRKRSFLETVSKILGS-RNSDLVSVCLTTVAWLSHALSAQPDAEFQLSA-FSAVISQLKEILQNGEQPQQKVLASM-S 1073 (1122)
Q Consensus 997 v~~G~~~~L~aL~~~l~s-~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A-~~~ll~~Lv~~L~~~~~~eer~LA~~-a 1073 (1122)
....|.+|+..|+..+++ .+.++..-||.|++=|.. ++-++.... .-.|+|-|..+|.|+..-.+-+|-++ .
T Consensus 484 ~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~-----~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~ 558 (708)
T PF05804_consen 484 LKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI-----PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVIL 558 (708)
T ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc-----CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHH
Confidence 112345677777777764 478899999998773221 333443333 45899999999999877666666554 5
Q ss_pred hhhhhCCcchhhhHHHHhhHhHHHhhhhc
Q 041480 1074 LLNFSKIPECGAVLKTIAAEIRIPLQSLT 1102 (1122)
Q Consensus 1074 L~~~~~~~~~~~~L~~~a~gi~~~Lr~L~ 1102 (1122)
+-+++.+++|...| ...|++.+|-.|-
T Consensus 559 ~gtla~d~~~A~lL--~~sgli~~Li~LL 585 (708)
T PF05804_consen 559 LGTLASDPECAPLL--AKSGLIPTLIELL 585 (708)
T ss_pred HHHHHCCHHHHHHH--HhCChHHHHHHHH
Confidence 56688899998888 5568887776663
No 8
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=9.1e-10 Score=130.01 Aligned_cols=288 Identities=16% Similarity=0.149 Sum_probs=219.5
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHH
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLEL 819 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~L 819 (1122)
.+|..+|-.+.++.. +....++.+|++|.++.+|.+.+...+++++=+|.+.+.....||.++...|++.||+.+
T Consensus 128 ~eAAWaLTnIAsgts-----e~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~ 202 (514)
T KOG0166|consen 128 FEAAWALTNIASGTS-----EQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRL 202 (514)
T ss_pred HHHHHHHHHHhcCch-----hhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHH
Confidence 345556777766542 456678999999999999999999999999999999999889999999999999999999
Q ss_pred hhcCC-hhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhh
Q 041480 820 LHSKQ-VKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYS 898 (1122)
Q Consensus 820 L~SGs-~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~s 898 (1122)
|.... .....+++=+|.+|+.-.....- +.. ...+++.|..++.+.+++...+|+.||..|+-...+.=..
T Consensus 203 l~~~~~~~~lRn~tW~LsNlcrgk~P~P~---~~~-----v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~ 274 (514)
T KOG0166|consen 203 LNKSDKLSMLRNATWTLSNLCRGKNPSPP---FDV-----VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQM 274 (514)
T ss_pred hccccchHHHHHHHHHHHHHHcCCCCCCc---HHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 97655 47888999999999865432211 111 2357889999999999999999999999997533323334
Q ss_pred hhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCC
Q 041480 899 IYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPL 978 (1122)
Q Consensus 899 IvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~ 978 (1122)
+...|.++.||.+|..... +++.-|.+++-|.+. |.
T Consensus 275 vi~~gvv~~LV~lL~~~~~--~v~~PaLRaiGNIvt-----G~------------------------------------- 310 (514)
T KOG0166|consen 275 VIDAGVVPRLVDLLGHSSP--KVVTPALRAIGNIVT-----GS------------------------------------- 310 (514)
T ss_pred HHHccchHHHHHHHcCCCc--ccccHHHhhccceee-----cc-------------------------------------
Confidence 6789999999999998776 366556655555442 10
Q ss_pred chhHHhHHHHHHHhHHHHhcCCchhhHHHHHHhhc-cCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHh
Q 041480 979 DDEEQASEEWLRKLSASLLGNRKRSFLETVSKILG-SRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEI 1057 (1122)
Q Consensus 979 ~~ee~~~~~w~rk~a~~Lv~~G~~~~L~aL~~~l~-s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~ 1057 (1122)
++ -+.++++.|. |..|..++. +....+.+.+ +|.++=+..-...-+|.+.-.+++|.|+.+
T Consensus 311 --d~---------QTq~vi~~~~---L~~l~~ll~~s~~~~ikkEA----cW~iSNItAG~~~qiqaVida~l~p~Li~~ 372 (514)
T KOG0166|consen 311 --DE---------QTQVVINSGA---LPVLSNLLSSSPKESIKKEA----CWTISNITAGNQEQIQAVIDANLIPVLINL 372 (514)
T ss_pred --HH---------HHHHHHhcCh---HHHHHHHhccCcchhHHHHH----HHHHHHhhcCCHHHHHHHHHcccHHHHHHH
Confidence 01 1247788886 555666677 4444455533 688888887554458999999999999999
Q ss_pred hcCCCChhhHHHHHHHhhhhhCCcchhhhHHHHhhHhHHHhhhhcc
Q 041480 1058 LQNGEQPQQKVLASMSLLNFSKIPECGAVLKTIAAEIRIPLQSLTE 1103 (1122)
Q Consensus 1058 L~~~~~~eer~LA~~aL~~~~~~~~~~~~L~~~a~gi~~~Lr~L~~ 1103 (1122)
|+.+. -.=|+=|+.++.|+..+..-.++-.....|+.+||=+|-.
T Consensus 373 l~~~e-f~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~ 417 (514)
T KOG0166|consen 373 LQTAE-FDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLT 417 (514)
T ss_pred Hhccc-hHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhccc
Confidence 99766 7789999999999999976666666677799999987763
No 9
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.91 E-value=4.9e-10 Score=91.06 Aligned_cols=39 Identities=28% Similarity=0.682 Sum_probs=31.2
Q ss_pred ccccchhccCCcccCCCcccchHHHHHHHHhCC---CCCCCC
Q 041480 650 CPLTGQLFEEPVTLESGQTFECEAIKEWIEQGN---RTCPVT 688 (1122)
Q Consensus 650 CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~---~tCP~t 688 (1122)
||||+++|+|||+++|||+||+.||.+||++.. ..||+|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998632 479986
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.88 E-value=1.8e-07 Score=115.58 Aligned_cols=307 Identities=20% Similarity=0.165 Sum_probs=200.8
Q ss_pred hhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHH
Q 041480 760 TNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 760 ~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs 839 (1122)
+|+..|++.|+|+.|+++|.+.+.+.+..++.+|.+++. |.+.|..++..|.+|.|+.+|... ..+..|+.+|++|+
T Consensus 322 ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS 398 (708)
T PF05804_consen 322 ENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLS 398 (708)
T ss_pred HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhc
Confidence 588899999999999999999998888889999999985 889999999999999999999754 45678999999999
Q ss_pred cccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCc-chHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCC
Q 041480 840 CLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPP-EQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTD 918 (1122)
Q Consensus 840 ~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~-~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~ 918 (1122)
.+++.+.. + . ..++++.|+.++-.++. ..+..+++++.||+.. ..|-..|.+.|..+.|+...-....
T Consensus 399 ~dd~~r~~---f---~---~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D- 467 (708)
T PF05804_consen 399 MDDEARSM---F---A---YTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRD- 467 (708)
T ss_pred cCHhhHHH---H---h---hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhccc-
Confidence 88776632 1 1 23678888887666544 4455677788899885 4577788888889999887654332
Q ss_pred hHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHH---H-----
Q 041480 919 EKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWL---R----- 990 (1122)
Q Consensus 919 ~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~---r----- 990 (1122)
....+.+-|++.|-. .-+.....|+...+++... . .+|| ...+.. .
T Consensus 468 ----~lLlKlIRNiS~h~~-~~k~~f~~~i~~L~~~v~~--------~------------~~ee-~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 468 ----PLLLKLIRNISQHDG-PLKELFVDFIGDLAKIVSS--------G------------DSEE-FVVECLGILANLTIP 521 (708)
T ss_pred ----HHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhc--------C------------CcHH-HHHHHHHHHHhcccC
Confidence 234568888887621 1122222333222222100 0 0111 122222 1
Q ss_pred --HhHHHHhcCCchhhHHHHHHhhccCCc--hhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhh
Q 041480 991 --KLSASLLGNRKRSFLETVSKILGSRNS--DLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQ 1066 (1122)
Q Consensus 991 --k~a~~Lv~~G~~~~L~aL~~~l~s~~~--~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~ee 1066 (1122)
+.+..+-+++..+||..+ |..|.. ++. |=++.|++ .++.-++ .-...|.+++++.|+.+|....+=.|
T Consensus 522 ~ld~~~ll~~~~llp~L~~~---L~~g~~~dDl~---LE~Vi~~g-tla~d~~-~A~lL~~sgli~~Li~LL~~kqeDdE 593 (708)
T PF05804_consen 522 DLDWAQLLQEYNLLPWLKDL---LKPGASEDDLL---LEVVILLG-TLASDPE-CAPLLAKSGLIPTLIELLNAKQEDDE 593 (708)
T ss_pred CcCHHHHHHhCCHHHHHHHH---hCCCCCChHHH---HHHHHHHH-HHHCCHH-HHHHHHhCChHHHHHHHHHhhCchHH
Confidence 223344467776776666 444422 333 33334444 3333333 25788889999999999996554445
Q ss_pred HHHH-HHHhhhhhCCcchhhhHHHHhhHhHHHhhhhcc-----chhhHHHHHHHH
Q 041480 1067 KVLA-SMSLLNFSKIPECGAVLKTIAAEIRIPLQSLTE-----VTWTTQELCAII 1115 (1122)
Q Consensus 1067 r~LA-~~aL~~~~~~~~~~~~L~~~a~gi~~~Lr~L~~-----~tw~A~el~~~~ 1115 (1122)
=|+- ..++|.|+.+++.|..++.- .++...|=+|.. +-=+|...+-++
T Consensus 594 ~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~ylidL~~d~N~~ir~~~d~~Ldii 647 (708)
T PF05804_consen 594 IVLQILYVFYQLLFHEETREVLLKE-TEIPAYLIDLMHDKNAEIRKVCDNALDII 647 (708)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5554 45899999999999877543 345555555542 122555555544
No 11
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.86 E-value=2.2e-09 Score=124.23 Aligned_cols=74 Identities=16% Similarity=0.370 Sum_probs=65.6
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHhcc
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSENC 716 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~n~ 716 (1122)
+..+...|.||||.++|.+||+++|||+||..||..|+.. ...||+|+.++.... +.+|..|..+|+.|.....
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~-Lr~N~~L~~iVe~~~~~R~ 93 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESK-LRSNWLVSEIVESFKNLRP 93 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCcccccc-CccchHHHHHHHHHHHhhH
Confidence 4567889999999999999999999999999999999986 458999999988777 4899999999999986443
No 12
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.78 E-value=8.8e-08 Score=107.01 Aligned_cols=266 Identities=17% Similarity=0.181 Sum_probs=192.9
Q ss_pred hHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCC--hhHHHHHHHHHHHHHc
Q 041480 763 KHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQ--VKPRTNTVLLLIDLIC 840 (1122)
Q Consensus 763 ~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs--~~aRenAv~aL~eLs~ 840 (1122)
+.++.+|++|.++.+|.+++.+.+++++=+|.+.+-....||.+|.+.|++.|++.+|.+.- ...-.+|.=.|.+|+.
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 45778999999999999999999999999999999888899999999999999999998753 4667788888999874
Q ss_pred ccCcc--chHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCC
Q 041480 841 LSRRR--DVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTD 918 (1122)
Q Consensus 841 ~~~~k--~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~ 918 (1122)
-.... +. ...-++++|..++-+-+++.-.+|..|+--|+-..-+--..+...|..+-||++|.+.+.
T Consensus 231 GknP~P~w~----------~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa- 299 (526)
T COG5064 231 GKNPPPDWS----------NISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESA- 299 (526)
T ss_pred CCCCCCchH----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccc-
Confidence 32211 11 123577888888888888888888888888865322223346788888889999987543
Q ss_pred hHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHhc
Q 041480 919 EKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLG 998 (1122)
Q Consensus 919 ~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~ 998 (1122)
+.|.-|.+.+-|+.. |. |. + +.++|+
T Consensus 300 -~iqtPalR~vGNIVT-----G~-------------------------------D~------Q-----------TqviI~ 325 (526)
T COG5064 300 -KIQTPALRSVGNIVT-----GS-------------------------------DD------Q-----------TQVIIN 325 (526)
T ss_pred -cccCHHHHhhcCeee-----cC-------------------------------cc------c-----------eehhee
Confidence 455555554443321 10 00 0 026777
Q ss_pred CCchhhHHHHHHhhccCCchhHH-HHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhh
Q 041480 999 NRKRSFLETVSKILGSRNSDLVS-VCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNF 1077 (1122)
Q Consensus 999 ~G~~~~L~aL~~~l~s~~~~l~~-acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~ 1077 (1122)
-|+-++|.-| |+++..++.+ +| |-++-+..-.-.-+|.+-..-|+|+|+.+|.+. +.--|.-||.|++|.
T Consensus 326 ~G~L~a~~~l---Ls~~ke~irKEaC-----WTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNa 396 (526)
T COG5064 326 CGALKAFRSL---LSSPKENIRKEAC-----WTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNA 396 (526)
T ss_pred cccHHHHHHH---hcChhhhhhhhhh-----eeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 8864444444 7766666665 45 554444433332378999999999999999954 466888999999999
Q ss_pred hCC----cchhhhHHHHhhHhHHHhhhhccc
Q 041480 1078 SKI----PECGAVLKTIAAEIRIPLQSLTEV 1104 (1122)
Q Consensus 1078 ~~~----~~~~~~L~~~a~gi~~~Lr~L~~~ 1104 (1122)
++| |+-.+.| .+.|..++|-+|-++
T Consensus 397 tsgg~~~PD~iryL--v~qG~IkpLc~~L~~ 425 (526)
T COG5064 397 TSGGLNRPDIIRYL--VSQGFIKPLCDLLDV 425 (526)
T ss_pred hccccCCchHHHHH--HHccchhHHHHHHhc
Confidence 998 6655666 677999999887655
No 13
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.75 E-value=4.3e-09 Score=110.76 Aligned_cols=61 Identities=23% Similarity=0.425 Sum_probs=51.7
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHh---------------CCCCCCCCCCcCCCCCCCcchH
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQ---------------GNRTCPVTGKYLACPSLPLTNF 702 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~---------------g~~tCP~trq~L~~~~ll~pN~ 702 (1122)
..+..++|.||||.+.++|||+++|||.||+.||.+|+.. +...||+|+.+++...+ .|.+
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L-vPiy 87 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL-VPIY 87 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE-EEee
Confidence 4456678999999999999999999999999999999853 23589999999988774 6653
No 14
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=4.5e-07 Score=107.68 Aligned_cols=252 Identities=14% Similarity=0.179 Sum_probs=181.6
Q ss_pred hHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcC-CcchHHHHHHHHHhhccC
Q 041480 813 VYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRS-PPEQRPLFSILLLHLDLL 891 (1122)
Q Consensus 813 I~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsg-s~~~k~lAA~aLlnLsll 891 (1122)
.+..+..+.+.+...+..|+..+.-|....++..+..++. .|.++.|+.+|... .+..+..||.+|.|++..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~-------~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsg 140 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQ-------SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASG 140 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHH-------cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcC
Confidence 5778888889988889999999999987777665544332 38999999999755 588999999999999986
Q ss_pred CChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCC
Q 041480 892 VEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLP 971 (1122)
Q Consensus 892 ~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~ 971 (1122)
....-..++++||||.++.||.+... .++++|.-||.|.+|. .+--|+.+++.+.+.+.++.+..+.
T Consensus 141 tse~T~~vv~agavp~fi~Ll~s~~~--~v~eQavWALgNIagd-----s~~~Rd~vl~~g~l~pLl~~l~~~~------ 207 (514)
T KOG0166|consen 141 TSEQTKVVVDAGAVPIFIQLLSSPSA--DVREQAVWALGNIAGD-----SPDCRDYVLSCGALDPLLRLLNKSD------ 207 (514)
T ss_pred chhhccccccCCchHHHHHHhcCCcH--HHHHHHHHHHhccccC-----ChHHHHHHHhhcchHHHHHHhcccc------
Confidence 54455568899999999999998764 6999999999999985 3456777766666544444422110
Q ss_pred CCCCCCCchhHHhHHHHHHHhHHH---HhcCCc--------hhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCc
Q 041480 972 VDDSTPLDDEEQASEEWLRKLSAS---LLGNRK--------RSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDA 1040 (1122)
Q Consensus 972 ~d~~~~~~~ee~~~~~w~rk~a~~---Lv~~G~--------~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t 1040 (1122)
.....|+++-+ |+.+.+ .+.|.+|..+|.+...++-... .|+++.|+-.++.
T Consensus 208 -------------~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da----~WAlsyLsdg~ne 270 (514)
T KOG0166|consen 208 -------------KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDA----CWALSYLTDGSNE 270 (514)
T ss_pred -------------chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHhcCChH
Confidence 01223333322 233332 2689999999999999987665 8999999999987
Q ss_pred hhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCCcchhhhHHHHhhHhHHHhhhhcc
Q 041480 1041 EFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIPECGAVLKTIAAEIRIPLQSLTE 1103 (1122)
Q Consensus 1041 ~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~~~~~~L~~~a~gi~~~Lr~L~~ 1103 (1122)
.+|++--.+.+|+||.+|.... ..-+.=|-.++=|.+-|.+---- .-+.-|...+|..|-.
T Consensus 271 ~iq~vi~~gvv~~LV~lL~~~~-~~v~~PaLRaiGNIvtG~d~QTq-~vi~~~~L~~l~~ll~ 331 (514)
T KOG0166|consen 271 KIQMVIDAGVVPRLVDLLGHSS-PKVVTPALRAIGNIVTGSDEQTQ-VVINSGALPVLSNLLS 331 (514)
T ss_pred HHHHHHHccchHHHHHHHcCCC-cccccHHHhhccceeeccHHHHH-HHHhcChHHHHHHHhc
Confidence 8999999999999999999433 22334466677776666433211 1134455555555543
No 15
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.1e-08 Score=110.27 Aligned_cols=81 Identities=28% Similarity=0.329 Sum_probs=73.9
Q ss_pred cccCCccCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHh
Q 041480 635 FDKGSFLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSE 714 (1122)
Q Consensus 635 ~~~~~~~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~ 714 (1122)
.++......+|+.++|.|+.+||+|||+.|+|+||+|+.|++++.+-++..|+|+.+|.... ++||..|+..|..|...
T Consensus 199 v~e~rk~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q-~ipN~alkevIa~fl~~ 277 (284)
T KOG4642|consen 199 VDEKRKKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQ-LIPNLALKEVIAAFLKE 277 (284)
T ss_pred HHHHhccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHh-hccchHHHHHHHHHHHh
Confidence 44444467889999999999999999999999999999999999999999999999999998 49999999999999987
Q ss_pred cc
Q 041480 715 NC 716 (1122)
Q Consensus 715 n~ 716 (1122)
|.
T Consensus 278 n~ 279 (284)
T KOG4642|consen 278 NE 279 (284)
T ss_pred cc
Confidence 65
No 16
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.43 E-value=5.7e-08 Score=84.13 Aligned_cols=45 Identities=47% Similarity=0.898 Sum_probs=32.6
Q ss_pred CCcccccccchhccCCccc-CCCcccchHHHHHHHHh-CCCCCCCCC
Q 041480 645 PQDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQ-GNRTCPVTG 689 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~-g~~tCP~tr 689 (1122)
.-.+.||||+++|+|||+. .|||+|+|.+|++|+.+ +...||+++
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 4568999999999999986 99999999999999953 556899965
No 17
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.43 E-value=1.2e-07 Score=75.59 Aligned_cols=38 Identities=34% Similarity=0.767 Sum_probs=33.5
Q ss_pred ccccchhccCC-cccCCCcccchHHHHHHHHhCCCCCCCC
Q 041480 650 CPLTGQLFEEP-VTLESGQTFECEAIKEWIEQGNRTCPVT 688 (1122)
Q Consensus 650 CPIc~elm~DP-Vtl~cGhTycRscIe~wl~~g~~tCP~t 688 (1122)
||||.+.+.|| |+++|||+||+.||++|++. +..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 7899986
No 18
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=3e-07 Score=98.87 Aligned_cols=71 Identities=23% Similarity=0.454 Sum_probs=61.1
Q ss_pred CCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHhcc
Q 041480 642 TSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSENC 716 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~n~ 716 (1122)
....+++.||||.+.|++|++++|||+||+.||..+|. +...||.|+. ... . +.+|..|..+++.....+.
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~-~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-N-LRPNVLLANLVERLRQLRL 78 (386)
T ss_pred hhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-c-cCccHHHHHHHHHHHhcCC
Confidence 34578999999999999999999999999999999998 7788999996 333 5 3799999999999876644
No 19
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.26 E-value=8.7e-06 Score=76.91 Aligned_cols=117 Identities=19% Similarity=0.144 Sum_probs=96.9
Q ss_pred HHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHH
Q 041480 807 MARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLL 886 (1122)
Q Consensus 807 Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLl 886 (1122)
+.+.|.++.|+.+|..++...|..|+.+|.+++...... .. .+.+ .|+++.|+.+++...+..+..++.+|.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~--~~---~~~~---~~~i~~l~~~l~~~~~~v~~~a~~~L~ 74 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDN--IQ---AVVE---AGGLPALVQLLKSEDEEVVKAALWALR 74 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHH--HH---HHHH---CCChHHHHHHHhCCCHHHHHHHHHHHH
Confidence 567789999999999999999999999999998652211 11 1122 378999999999988999999999999
Q ss_pred hhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhh
Q 041480 887 HLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILG 933 (1122)
Q Consensus 887 nLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~La 933 (1122)
+|+...++.+..+++.|+++.|+.+|..... ..++.|+.+|.+|+
T Consensus 75 ~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~--~~~~~a~~~l~~l~ 119 (120)
T cd00020 75 NLAAGPEDNKLIVLEAGGVPKLVNLLDSSNE--DIQKNATGALSNLA 119 (120)
T ss_pred HHccCcHHHHHHHHHCCChHHHHHHHhcCCH--HHHHHHHHHHHHhh
Confidence 9998655667778889999999999987743 69999999999987
No 20
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.25 E-value=4.4e-07 Score=74.34 Aligned_cols=36 Identities=25% Similarity=0.708 Sum_probs=23.3
Q ss_pred ccccchhccC----CcccCCCcccchHHHHHHHHhC---CCCCC
Q 041480 650 CPLTGQLFEE----PVTLESGQTFECEAIKEWIEQG---NRTCP 686 (1122)
Q Consensus 650 CPIc~elm~D----PVtl~cGhTycRscIe~wl~~g---~~tCP 686 (1122)
||||.+ |.+ ||+|+|||+||+.||++++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999864 44677
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.23 E-value=7.2e-07 Score=71.39 Aligned_cols=39 Identities=36% Similarity=0.946 Sum_probs=36.4
Q ss_pred ccccchhccCCc-ccCCCcccchHHHHHHHH-hCCCCCCCC
Q 041480 650 CPLTGQLFEEPV-TLESGQTFECEAIKEWIE-QGNRTCPVT 688 (1122)
Q Consensus 650 CPIc~elm~DPV-tl~cGhTycRscIe~wl~-~g~~tCP~t 688 (1122)
||||.+.+.+|+ +++|||+||+.||.+|+. .+...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999999 567789987
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.22 E-value=1.3e-05 Score=75.80 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=98.2
Q ss_pred HHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccC
Q 041480 764 HLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSR 843 (1122)
Q Consensus 764 ~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~ 843 (1122)
.+++.|+++.|+.+|..++...+..++..|.+++..++.++..+.+.+.++.++.+|...+...+..|+.+|.+|+....
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35678999999999998888899999999999887667888889889999999999999999999999999999985443
Q ss_pred ccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhc
Q 041480 844 RRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLD 889 (1122)
Q Consensus 844 ~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLs 889 (1122)
. ....+ . ..|+++.|+.+++..+...+..++.+|.+|+
T Consensus 82 ~--~~~~~---~---~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 D--NKLIV---L---EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred H--HHHHH---H---HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1 11111 2 2378999999999888888888888888875
No 23
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.20 E-value=6.9e-07 Score=99.45 Aligned_cols=72 Identities=17% Similarity=0.311 Sum_probs=64.4
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHh
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSE 714 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~ 714 (1122)
+-.+.+-+.|-||.+.|+-||+++||||||--||..++.. ...||.|..++.... ++.|..|-.+|+.+...
T Consensus 17 lk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~-Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 17 LKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESD-LRNNRILDEIVKSLNFA 88 (442)
T ss_pred hhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhh-hhhhhHHHHHHHHHHHH
Confidence 4456678899999999999999999999999999999984 789999999998887 59999999999988754
No 24
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.10 E-value=3.9e-05 Score=94.15 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=125.9
Q ss_pred hhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcc--hhhHHHHHhccchHHHHHHhhc-CChhHHHHHHHHH
Q 041480 759 ITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEAD--AGCRNQMARNINVYSLLELLHS-KQVKPRTNTVLLL 835 (1122)
Q Consensus 759 ~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D--~snR~~Iae~GaI~pLV~LL~S-Gs~~aRenAv~aL 835 (1122)
.+.+..+-+.|+|+.||.+|+..+.+.+.+|.+.|.+++-.. ++|+-.|.+.++|+.++++|+. ++.+.|++...+|
T Consensus 265 ~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~L 344 (717)
T KOG1048|consen 265 NKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGIL 344 (717)
T ss_pred HHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHH
Confidence 346667888999999999999999999999999999997543 4599999999999999999975 8999999999999
Q ss_pred HHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhh---cC-----------CcchHHHHHHHHHhhccCCChhhhhhhh
Q 041480 836 IDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQ---RS-----------PPEQRPLFSILLLHLDLLVEPRKYSIYR 901 (1122)
Q Consensus 836 ~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLq---sg-----------s~~~k~lAA~aLlnLsll~EpnK~sIvR 901 (1122)
.+|+..+.-|.. + +..++++|-.-+- +| ..+---.+++.|.||+......|..+-+
T Consensus 345 WNLSS~D~lK~~---i-------i~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~ 414 (717)
T KOG1048|consen 345 WNLSSNDALKML---I-------ITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRE 414 (717)
T ss_pred hcccchhHHHHH---H-------HHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhh
Confidence 999855443311 1 1245555543221 11 1334467889999998855556666665
Q ss_pred -hccHHHHHHHHhc----cCCChHHHHHHHHHHHHhhc
Q 041480 902 -EAAVDAITVALEE----SLTDEKIQEKCCRALLILGG 934 (1122)
Q Consensus 902 -eGAV~aLV~LL~~----g~~~~~~qe~Aa~AL~~Lag 934 (1122)
.|-|++|+..+.. +..+.+..|+|.-+|=||.=
T Consensus 415 c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 415 CDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred ccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence 8899999887763 44455789999999988874
No 25
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.09 E-value=4.8e-05 Score=84.48 Aligned_cols=161 Identities=12% Similarity=0.038 Sum_probs=121.9
Q ss_pred HhhccHHHHHHhhcC-CCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCc
Q 041480 766 ISIGGLQFLICRFES-GKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRR 844 (1122)
Q Consensus 766 asaGaIp~LV~LL~s-gs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~ 844 (1122)
...+.+..|+.+|+. .++..++.+..+|.+++. ...++..|.+.|+++.+..+|...+...|+.|+.+|.+|+...++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 556777889999984 678999999999999875 568999999999999999999999999999999999999877766
Q ss_pred cchHHHHHhhhhhhhhhhHHHHHHHhhcC--CcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHH
Q 041480 845 RDVSTLLRNVQNEELVNAMHVLLLYLQRS--PPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQ 922 (1122)
Q Consensus 845 k~~~~~L~~I~~eG~~gaI~~Ll~lLqsg--s~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~q 922 (1122)
...+ + .-+..+....-++ ....|..+..+|.||+...+ +...+. +.|+.++.+|..|.. +.|
T Consensus 88 ~~~I------k-----~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~~~~l~--~~i~~ll~LL~~G~~--~~k 151 (254)
T PF04826_consen 88 QEQI------K-----MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-YHHMLA--NYIPDLLSLLSSGSE--KTK 151 (254)
T ss_pred HHHH------H-----HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-hhhhHH--hhHHHHHHHHHcCCh--HHH
Confidence 5322 1 1122222222233 34556677788999987533 444443 369999999999875 699
Q ss_pred HHHHHHHHHhhcCCCCCchhhhhhhh
Q 041480 923 EKCCRALLILGGRFSFSREVANESWI 948 (1122)
Q Consensus 923 e~Aa~AL~~Lag~fS~sGe~~~~~~L 948 (1122)
.++.++|.+|+.+ ...+++.|
T Consensus 152 ~~vLk~L~nLS~n-----p~~~~~Ll 172 (254)
T PF04826_consen 152 VQVLKVLVNLSEN-----PDMTRELL 172 (254)
T ss_pred HHHHHHHHHhccC-----HHHHHHHH
Confidence 9999999999963 44456555
No 26
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.09 E-value=2.2e-06 Score=93.86 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=42.0
Q ss_pred CCCcccccccchhccCC--------cccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 644 IPQDFICPLTGQLFEEP--------VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 644 ipeef~CPIc~elm~DP--------Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
...+..||||++.+.+| |+++|||.||+.||.+|+.. ..+||+||+++..
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~~ 228 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEeeE
Confidence 35678999999987764 56799999999999999874 6799999997753
No 27
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.05 E-value=2.8e-06 Score=71.23 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=41.3
Q ss_pred CcccccccchhccCCcccCCCcc-cchHHHHHHHHhCCCCCCCCCCcCC
Q 041480 646 QDFICPLTGQLFEEPVTLESGQT-FECEAIKEWIEQGNRTCPVTGKYLA 693 (1122)
Q Consensus 646 eef~CPIc~elm~DPVtl~cGhT-ycRscIe~wl~~g~~tCP~trq~L~ 693 (1122)
+++.|+||.+-+.++++++|||. ||..|+.+|+. ....||+|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46789999999999999999999 99999999998 6889999999765
No 28
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.03 E-value=1.4e-06 Score=76.73 Aligned_cols=59 Identities=24% Similarity=0.386 Sum_probs=33.4
Q ss_pred CcccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHH
Q 041480 646 QDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVI 708 (1122)
Q Consensus 646 eef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lI 708 (1122)
+-+.|++|.++|++||++ .|.|.||..||.+.+.. .||+|+.|-...++ .-|+.|-.+|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~-~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDI-QINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS-----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHH-HhhhhhhccC
Confidence 457899999999999976 99999999999775443 49999998887774 8999998876
No 29
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.9e-06 Score=91.25 Aligned_cols=55 Identities=20% Similarity=0.466 Sum_probs=48.8
Q ss_pred CCcccccccchhccCCcccCCCcccchHHHHHHHHh--CCCCCCCCCCcCCCCCCCcc
Q 041480 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQ--GNRTCPVTGKYLACPSLPLT 700 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~--g~~tCP~trq~L~~~~ll~p 700 (1122)
-..|-|-||++.-+|||++.|||-||=.||-+|+.. +...||+|+..++.+.+ +|
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v-vP 101 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV-VP 101 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceE-Ee
Confidence 467999999999999999999999999999999985 45679999998888774 55
No 30
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.97 E-value=6.4e-06 Score=65.33 Aligned_cols=43 Identities=35% Similarity=0.756 Sum_probs=39.0
Q ss_pred cccccchhccCCcccC-CCcccchHHHHHHHHhCCCCCCCCCCc
Q 041480 649 ICPLTGQLFEEPVTLE-SGQTFECEAIKEWIEQGNRTCPVTGKY 691 (1122)
Q Consensus 649 ~CPIc~elm~DPVtl~-cGhTycRscIe~wl~~g~~tCP~trq~ 691 (1122)
.|+||.+.+.+|+.+. |||.|+..|+..|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999999998875 999999999999999878899999875
No 31
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00037 Score=78.84 Aligned_cols=301 Identities=13% Similarity=0.119 Sum_probs=197.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHh-hhcchhhHHHHHhccchHHHHHHhhc-CChhHHHHHHHHHHHHHcccCccchH
Q 041480 771 LQFLICRFESGKLEEKARVAALMCCC-IEADAGCRNQMARNINVYSLLELLHS-KQVKPRTNTVLLLIDLICLSRRRDVS 848 (1122)
Q Consensus 771 Ip~LV~LL~sgs~Eek~~AaalL~~L-a~~D~snR~~Iae~GaI~pLV~LL~S-Gs~~aRenAv~aL~eLs~~~~~k~~~ 848 (1122)
.|-|..-|-+.+.|++..++.-...+ +..+..--..+.+.|.+|.+|+++.. ...-.+..|+=+|.+++.-.... .
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q-T- 150 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ-T- 150 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc-e-
Confidence 46677777788899998887755433 33332233456778999999999954 45567889999999987432211 0
Q ss_pred HHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHH
Q 041480 849 TLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRA 928 (1122)
Q Consensus 849 ~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~A 928 (1122)
+-+++ .||++.++.+|.++..+.+..++.||-|++-..+.-|.-+..-||+++|+.+|.++...-..-.++.-.
T Consensus 151 ---kvVvd---~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWt 224 (526)
T COG5064 151 ---KVVVD---AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWT 224 (526)
T ss_pred ---EEEEe---CCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHH
Confidence 11232 489999999999999999999999999998866667888899999999999998766533467788999
Q ss_pred HHHhh-cCCCCCchhhhh---hhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhH-HHHH---------HHhHH
Q 041480 929 LLILG-GRFSFSREVANE---SWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQAS-EEWL---------RKLSA 994 (1122)
Q Consensus 929 L~~La-g~fS~sGe~~~~---~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~-~~w~---------rk~a~ 994 (1122)
|.||| |+++--...-.. ..|.|.--.. |+|... --|- .++.
T Consensus 225 LSNlcRGknP~P~w~~isqalpiL~KLiys~------------------------D~evlvDA~WAiSYlsDg~~E~i~- 279 (526)
T COG5064 225 LSNLCRGKNPPPDWSNISQALPILAKLIYSR------------------------DPEVLVDACWAISYLSDGPNEKIQ- 279 (526)
T ss_pred HHHhhCCCCCCCchHHHHHHHHHHHHHHhhc------------------------CHHHHHHHHHHHHHhccCcHHHHH-
Confidence 99999 443322111111 1121111110 011100 1121 2343
Q ss_pred HHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCch--hhHhhHHHhHHHHHHhhcCCCChhhHHHHHH
Q 041480 995 SLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAE--FQLSAFSAVISQLKEILQNGEQPQQKVLASM 1072 (1122)
Q Consensus 995 ~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~--~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~ 1072 (1122)
++++.|- -.+|++.|......+..+.|-++. ...+.++ .|-.-..+.|+-|--+|.+.|+ .-|.-||.
T Consensus 280 avld~g~---~~RLvElLs~~sa~iqtPalR~vG------NIVTG~D~QTqviI~~G~L~a~~~lLs~~ke-~irKEaCW 349 (526)
T COG5064 280 AVLDVGI---PGRLVELLSHESAKIQTPALRSVG------NIVTGSDDQTQVIINCGALKAFRSLLSSPKE-NIRKEACW 349 (526)
T ss_pred HHHhcCC---cHHHHHHhcCccccccCHHHHhhc------CeeecCccceehheecccHHHHHHHhcChhh-hhhhhhhe
Confidence 6777775 355777788888888777765444 3333333 4666777888888888998887 68889999
Q ss_pred HhhhhhCCcchhhhHHHHhhHhHHHhhhhc-cchh-hHHHHHHHH
Q 041480 1073 SLLNFSKIPECGAVLKTIAAEIRIPLQSLT-EVTW-TTQELCAII 1115 (1122)
Q Consensus 1073 aL~~~~~~~~~~~~L~~~a~gi~~~Lr~L~-~~tw-~A~el~~~~ 1115 (1122)
.+.|...|.-- ++=.-++..+..+|-.|- .... +-||..=.+
T Consensus 350 TiSNITAGnte-qiqavid~nliPpLi~lls~ae~k~kKEACWAi 393 (526)
T COG5064 350 TISNITAGNTE-QIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393 (526)
T ss_pred eecccccCCHH-HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998422 333335666666665543 3344 555555444
No 32
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00032 Score=80.24 Aligned_cols=184 Identities=23% Similarity=0.214 Sum_probs=136.3
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHH
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLEL 819 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~L 819 (1122)
..++..|+.++- +.+|+--++..|+...|+..|.+.+.+.|+.|+-+|..|++.++.+...+.+.|++..|+..
T Consensus 101 e~ald~Le~lve------~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 101 EDALDNLEELVE------DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred HHHHHHHHHHHH------hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 445556666553 35688899999999999999999999999999999999999999999999999999999999
Q ss_pred hhc-CChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCC--cchHHHHHHHHHhhccCCChhh
Q 041480 820 LHS-KQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSP--PEQRPLFSILLLHLDLLVEPRK 896 (1122)
Q Consensus 820 L~S-Gs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs--~~~k~lAA~aLlnLsll~EpnK 896 (1122)
|.+ ++..+|.+|+-+|..|...... ....|+. .++...|..++++++ ...|.-|+.++-.|..-....+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~-g~~~fl~-------~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~ 246 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKP-GQDEFLK-------LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE 246 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcH-HHHHHHh-------cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh
Confidence 976 5677899999999998744332 1222443 466888999999854 3445555544444443323344
Q ss_pred hhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCC
Q 041480 897 YSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFS 939 (1122)
Q Consensus 897 ~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~s 939 (1122)
.-+-..|....++.+..+... .+++.|..+++.+-..++..
T Consensus 247 d~~~~~~f~~~~~~l~~~l~~--~~~e~~l~~~l~~l~~~~~~ 287 (342)
T KOG2160|consen 247 DIASSLGFQRVLENLISSLDF--EVNEAALTALLSLLSELSTR 287 (342)
T ss_pred hHHHHhhhhHHHHHHhhccch--hhhHHHHHHHHHHHHHHhhc
Confidence 434446766777777777666 48999999999988765443
No 33
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=5.7e-06 Score=85.80 Aligned_cols=50 Identities=22% Similarity=0.521 Sum_probs=43.5
Q ss_pred cccccccchhcc--CCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCC
Q 041480 647 DFICPLTGQLFE--EPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSL 697 (1122)
Q Consensus 647 ef~CPIc~elm~--DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~l 697 (1122)
-|.||||++-+. .||.+.|||.||+.||.+-++. ...||+|++.+..+.+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQF 182 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhh
Confidence 389999999994 6788999999999999999885 6799999998877653
No 34
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.88 E-value=0.00029 Score=78.41 Aligned_cols=160 Identities=11% Similarity=0.088 Sum_probs=126.1
Q ss_pred hhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcC--ChhHHHHHHHHHHH
Q 041480 760 TNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSK--QVKPRTNTVLLLID 837 (1122)
Q Consensus 760 ~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SG--s~~aRenAv~aL~e 837 (1122)
.|+..|...|+++.+..+|...++..+.+|+.+|.+++. +.+++..|.. .++.+++.+.+. +...+..++.+|.+
T Consensus 45 ~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~n 121 (254)
T PF04826_consen 45 FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV-NDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTN 121 (254)
T ss_pred hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-ChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHc
Confidence 578888899999999999999999999999999999986 6678887754 477888866654 56788999999999
Q ss_pred HHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCC
Q 041480 838 LICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLT 917 (1122)
Q Consensus 838 Ls~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~ 917 (1122)
|+..+.+... ..+.|+.|+.+|..|+...|..+..+|.||+.. ...-..+..+++...++.++.....
T Consensus 122 Ltv~~~~~~~-----------l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~ 189 (254)
T PF04826_consen 122 LTVTNDYHHM-----------LANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSES 189 (254)
T ss_pred cCCCcchhhh-----------HHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCc
Confidence 9866654322 125688899999999999999999999999885 3355667788899999999987654
Q ss_pred ChHHHHHHHHHHHHhhcC
Q 041480 918 DEKIQEKCCRALLILGGR 935 (1122)
Q Consensus 918 ~~~~qe~Aa~AL~~Lag~ 935 (1122)
. ..-..+.....||..+
T Consensus 190 ~-~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 190 K-ENLLRVLTFFENINEN 206 (254)
T ss_pred c-HHHHHHHHHHHHHHHh
Confidence 3 3445566666666543
No 35
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.83 E-value=8e-06 Score=66.63 Aligned_cols=40 Identities=40% Similarity=0.842 Sum_probs=34.0
Q ss_pred cccccchhcc---CCcccCCCcccchHHHHHHHHhCCCCCCCCC
Q 041480 649 ICPLTGQLFE---EPVTLESGQTFECEAIKEWIEQGNRTCPVTG 689 (1122)
Q Consensus 649 ~CPIc~elm~---DPVtl~cGhTycRscIe~wl~~g~~tCP~tr 689 (1122)
.||||++-|. .++.++|||.|++.||.+|+.. +.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999994 5567799999999999999987 56999985
No 36
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=1.8e-05 Score=99.28 Aligned_cols=74 Identities=28% Similarity=0.404 Sum_probs=68.5
Q ss_pred cCCCCCcccccccchhccCCcccC-CCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHhcc
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLE-SGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSENC 716 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~-cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~n~ 716 (1122)
++++|++|..||+.-+|+|||++| +|++.||+.|++++-. ..+.|.||++|..+.+ .||..||.-|+.|..++.
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v-~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMV-SPNEELKAKIRCWIKEKR 938 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhc-CCCHHHHHHHHHHHHHhh
Confidence 678999999999999999999998 9999999999999875 6789999999999984 999999999999998754
No 37
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.80 E-value=1.6e-05 Score=60.83 Aligned_cols=39 Identities=38% Similarity=0.943 Sum_probs=36.4
Q ss_pred ccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCC
Q 041480 650 CPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVT 688 (1122)
Q Consensus 650 CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~t 688 (1122)
||||.+...+|++++|||.|+..||..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999999777889986
No 38
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.78 E-value=1.2e-05 Score=88.30 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=58.7
Q ss_pred CCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHH
Q 041480 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKS 713 (1122)
Q Consensus 643 ~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~ 713 (1122)
.+..-+.|-||.+.|+-|+.++||||||--||.+++.. ...||+|+.+....- +.-|..++..++.+..
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esr-lr~~s~~~ei~es~~~ 89 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESR-LRGSSGSREINESHAR 89 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhh-cccchhHHHHHHhhhh
Confidence 44566899999999999999999999999999999985 789999999877655 4777778887777754
No 39
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=97.67 E-value=0.00079 Score=83.09 Aligned_cols=176 Identities=16% Similarity=0.134 Sum_probs=130.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHH
Q 041480 771 LQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTL 850 (1122)
Q Consensus 771 Ip~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~ 850 (1122)
+|-.+..|.+.+...|..+++.|-.+-..|..-|..|-+-|+|+.||.+|.+...+.+.+|..+|.+|+.-...... +
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N--K 312 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN--K 312 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc--c
Confidence 34556677777777788888888766666778888889999999999999999999999999999999865433111 1
Q ss_pred HHhhhhhhhhhhHHHHHHHhhc-CCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCC-------C----
Q 041480 851 LRNVQNEELVNAMHVLLLYLQR-SPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLT-------D---- 918 (1122)
Q Consensus 851 L~~I~~eG~~gaI~~Ll~lLqs-gs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~-------~---- 918 (1122)
+ +|++ .++|+.|+.+|+. ++.+.+...+++|+||+.. +.-|+.|.+. |..+|..-+-..-. .
T Consensus 313 l-ai~~---~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~ 386 (717)
T KOG1048|consen 313 L-AIKE---LNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAE 386 (717)
T ss_pred h-hhhh---cCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccc
Confidence 1 2453 4899999999996 6889999999999999885 5678888776 47777665532110 1
Q ss_pred -hHHHHHHHHHHHHhhcCCCCCchhhhhhhhhcccccccccc
Q 041480 919 -EKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCE 959 (1122)
Q Consensus 919 -~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~ 959 (1122)
...-.+++.+|=||.. .| ..++..+-+-.|+++.+.
T Consensus 387 ~~~vf~n~tgcLRNlSs----~~-~eaR~~mr~c~GLIdaL~ 423 (717)
T KOG1048|consen 387 DSTVFRNVTGCLRNLSS----AG-QEAREQMRECDGLIDALL 423 (717)
T ss_pred cceeeehhhhhhccccc----hh-HHHHHHHhhccchHHHHH
Confidence 1244578888887764 23 346777888888887554
No 40
>PHA02926 zinc finger-like protein; Provisional
Probab=97.66 E-value=3e-05 Score=83.20 Aligned_cols=52 Identities=12% Similarity=0.280 Sum_probs=42.5
Q ss_pred CCCCcccccccchhccC---------CcccCCCcccchHHHHHHHHhC-----CCCCCCCCCcCCC
Q 041480 643 SIPQDFICPLTGQLFEE---------PVTLESGQTFECEAIKEWIEQG-----NRTCPVTGKYLAC 694 (1122)
Q Consensus 643 ~ipeef~CPIc~elm~D---------PVtl~cGhTycRscIe~wl~~g-----~~tCP~trq~L~~ 694 (1122)
....+..|+||.+..-+ +|+.+|+|+||..||..|.... ..+||+||+.+..
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 44678999999998744 4777999999999999998742 4579999998763
No 41
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.58 E-value=7.6e-05 Score=84.25 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=41.0
Q ss_pred Ccccccccchh-ccCC----cccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCC
Q 041480 646 QDFICPLTGQL-FEEP----VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPS 696 (1122)
Q Consensus 646 eef~CPIc~el-m~DP----Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ 696 (1122)
++..||||..- .-.| .+.+|||+||++||...|..|...||.|+.++....
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 56789999772 3344 233899999999999998888889999999887655
No 42
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.57 E-value=0.027 Score=68.51 Aligned_cols=339 Identities=16% Similarity=0.161 Sum_probs=202.5
Q ss_pred HHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhh
Q 041480 742 AIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLH 821 (1122)
Q Consensus 742 Al~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~ 821 (1122)
++..|+.++......+ ...+..++|...|...+...|.-++..|.+++..++..-..+.+.+.++.++.+|.
T Consensus 58 ~~~iL~~~l~~~~~~~--------l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~ 129 (503)
T PF10508_consen 58 ICDILKRLLSALSPDS--------LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR 129 (503)
T ss_pred HHHHHHHHHhccCHHH--------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc
Confidence 4455666665443221 13456788888898888888888888888888766555556677888999999999
Q ss_pred cCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhh
Q 041480 822 SKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYR 901 (1122)
Q Consensus 822 SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvR 901 (1122)
..+......|+.+|..|+..... +..|... +.+..|..++...+...+--+-.++.+++...+..-..+..
T Consensus 130 ~~d~~Va~~A~~~L~~l~~~~~~------~~~l~~~---~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~ 200 (503)
T PF10508_consen 130 DPDLSVAKAAIKALKKLASHPEG------LEQLFDS---NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN 200 (503)
T ss_pred CCcHHHHHHHHHHHHHHhCCchh------HHHHhCc---chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 99999999999999999854321 1112222 33566777777656666666777788887755556666777
Q ss_pred hccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchh
Q 041480 902 EAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDE 981 (1122)
Q Consensus 902 eGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~e 981 (1122)
.|.++.++..|.+... -+|.+|...|..||.+ .. ...+|.+. |+.+.+.....+. ..|.. ..... -
T Consensus 201 sgll~~ll~eL~~dDi--Lvqlnalell~~La~~--~~----g~~yL~~~-gi~~~L~~~l~~~-~~dp~--~~~~~--l 266 (503)
T PF10508_consen 201 SGLLDLLLKELDSDDI--LVQLNALELLSELAET--PH----GLQYLEQQ-GIFDKLSNLLQDS-EEDPR--LSSLL--L 266 (503)
T ss_pred ccHHHHHHHHhcCccH--HHHHHHHHHHHHHHcC--hh----HHHHHHhC-CHHHHHHHHHhcc-ccCCc--ccchh--h
Confidence 9999999999988443 5899999999999962 22 35667555 5555444322211 11110 00000 0
Q ss_pred HHhHHHHHHHhHH---HHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhh------h-ccCCCc---hhhHh---
Q 041480 982 EQASEEWLRKLSA---SLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHA------L-SAQPDA---EFQLS--- 1045 (1122)
Q Consensus 982 e~~~~~w~rk~a~---~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~------L-~~~~~t---~~~~~--- 1045 (1122)
.. .-....+++. .-+-.+...|+..|-+++.+..+...-+.+-|++=+++. | ...++. .++.+
T Consensus 267 ~g-~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~ 345 (503)
T PF10508_consen 267 PG-RMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDA 345 (503)
T ss_pred hh-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 00 1122233332 223356678889999989999887776666555533221 1 000110 00000
Q ss_pred -------hHHHhHHHHHHhhcCCCC-hhhHHHHHH-HhhhhhCCcchhhhHHHHhh--------HhHHHhhhhccchhhH
Q 041480 1046 -------AFSAVISQLKEILQNGEQ-PQQKVLASM-SLLNFSKIPECGAVLKTIAA--------EIRIPLQSLTEVTWTT 1108 (1122)
Q Consensus 1046 -------A~~~ll~~Lv~~L~~~~~-~eer~LA~~-aL~~~~~~~~~~~~L~~~a~--------gi~~~Lr~L~~~tw~A 1108 (1122)
-+..++.-|-.+|..+.. -.+++++.. ..|+...+......|+.+.+ .++.-|+.|+...|+.
T Consensus 346 ~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~ 425 (503)
T PF10508_consen 346 IKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQ 425 (503)
T ss_pred hcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHH
Confidence 122334455555554443 335554422 33333333222224544433 5667788889999988
Q ss_pred HHHH
Q 041480 1109 QELC 1112 (1122)
Q Consensus 1109 ~el~ 1112 (1122)
+++.
T Consensus 426 ~~i~ 429 (503)
T PF10508_consen 426 REIC 429 (503)
T ss_pred HHHH
Confidence 8764
No 43
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=5.6e-05 Score=83.74 Aligned_cols=54 Identities=24% Similarity=0.446 Sum_probs=46.6
Q ss_pred CCCC-CcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCC
Q 041480 642 TSIP-QDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPS 696 (1122)
Q Consensus 642 ~~ip-eef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ 696 (1122)
..+| ..+.|-||++-+.||--+||||.||=+||..|..+ ..-||+||+.+++..
T Consensus 233 ~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSK 287 (293)
T ss_pred ccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcc
Confidence 3444 55999999999999999999999999999999986 445999999887765
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=2.5e-05 Score=88.20 Aligned_cols=70 Identities=21% Similarity=0.314 Sum_probs=56.3
Q ss_pred CCCCCcccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHH
Q 041480 642 TSIPQDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGW 711 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w 711 (1122)
..+.-+|.||||+.|++-.+++ .|+|-||+.||..-+..|+..||.|++.+...--|.+.+..-.+|...
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 4457789999999999999988 999999999999999999999999999875432245555555555543
No 45
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.0018 Score=73.52 Aligned_cols=185 Identities=15% Similarity=0.166 Sum_probs=121.2
Q ss_pred hhhHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhc-CChhHHHH---HHHHH
Q 041480 761 NAKHLISIGGLQFLICRFESG-KLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHS-KQVKPRTN---TVLLL 835 (1122)
Q Consensus 761 Nr~~IasaGaIp~LV~LL~sg-s~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~S-Gs~~aRen---Av~aL 835 (1122)
.++.|+..|+...|+..|..+ ++..-..+...|..++..|+-|+ .|++.|++..|++++.. +....|+. ++.+|
T Consensus 233 hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~-~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslL 311 (461)
T KOG4199|consen 233 HARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICK-SIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLL 311 (461)
T ss_pred HHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHH-HHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHH
Confidence 567899999999999998743 45555566667777776666565 79999999999999975 66666644 55555
Q ss_pred HHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCC-cchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhc
Q 041480 836 IDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSP-PEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEE 914 (1122)
Q Consensus 836 ~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs-~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~ 914 (1122)
..|+-.+.+|.. |++.|...-|..|. ++..+ |---..+-+++.-||+-...+...+++.|+-+..|++|+.
T Consensus 312 ralAG~DsvKs~------IV~~gg~~~ii~l~--~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmka 383 (461)
T KOG4199|consen 312 RALAGSDSVKST------IVEKGGLDKIITLA--LRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKA 383 (461)
T ss_pred HHHhCCCchHHH------HHHhcChHHHHHHH--HHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHh
Confidence 555555555533 45444333333333 23332 2222222233555666555678889999999999999987
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccc
Q 041480 915 SLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEG 960 (1122)
Q Consensus 915 g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~ 960 (1122)
.-....+|.+|+..+-|+..+ |..-..-|| .-|+.+....
T Consensus 384 hP~~a~vQrnac~~IRNiv~r----s~~~~~~~l--~~GiE~Li~~ 423 (461)
T KOG4199|consen 384 HPVAAQVQRNACNMIRNIVVR----SAENRTILL--ANGIEKLIRT 423 (461)
T ss_pred CcHHHHHHHHHHHHHHHHHHh----hhhccchHH--hccHHHHHHH
Confidence 654446999999999999875 222233344 4566554443
No 46
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.43 E-value=7.4e-05 Score=84.12 Aligned_cols=69 Identities=20% Similarity=0.365 Sum_probs=55.3
Q ss_pred CCCCCcccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCCCC-C--CcchHHHHHHHHHH
Q 041480 642 TSIPQDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLACPS-L--PLTNFILKRVIDGW 711 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~-l--l~pN~~Lk~lIe~w 711 (1122)
..+-.+..|++|..+|.|+-|+ .|=|||||+||.+++.. ..+||.|+..+.... + +.+..+|..++...
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 3456789999999999999877 99999999999999998 899999998776554 0 13446666666543
No 47
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=8.4e-05 Score=87.67 Aligned_cols=53 Identities=23% Similarity=0.443 Sum_probs=46.2
Q ss_pred CCcccccccchhccCCcccCCCcccchHHHHHHHHh----CCCCCCCCCCcCCCCCC
Q 041480 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQ----GNRTCPVTGKYLACPSL 697 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~----g~~tCP~trq~L~~~~l 697 (1122)
+.+..||||++-..-|+.+.|||.||-.||.++|.. +-..||+|+..+...++
T Consensus 184 ~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 184 STDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 348999999999999999999999999999999875 45689999998776553
No 48
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00024 Score=84.86 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=67.9
Q ss_pred CccCCCCCcccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHhcc
Q 041480 639 SFLTSIPQDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSENC 716 (1122)
Q Consensus 639 ~~~~~ipeef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~n~ 716 (1122)
.-++++|++|+.|++.-+|+|||++ .+|.|.+|+.|..++-. ..++|..|.||+-.+. +||..||.-|..+...++
T Consensus 846 ED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddV-tpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 846 EDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDV-TPNAELREKINRFYKCKG 922 (929)
T ss_pred hhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhc-CCCHHHHHHHHHHHhccc
Confidence 3378999999999999999999999 66899999999999875 6799999999998884 999999999999887643
No 49
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.015 Score=68.73 Aligned_cols=289 Identities=16% Similarity=0.140 Sum_probs=188.9
Q ss_pred HHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCc
Q 041480 765 LISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRR 844 (1122)
Q Consensus 765 IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~ 844 (1122)
+.....+..||+.|+-.+.+.-.-++..|..++..+ +||....+.|-++.|+.++.......+...+.+|++|+.+...
T Consensus 300 MrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~gl 378 (791)
T KOG1222|consen 300 MRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGL 378 (791)
T ss_pred HHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccc
Confidence 444466778999998777777777778888888765 7999999999999999999999999999999999999977543
Q ss_pred cchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHH
Q 041480 845 RDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEK 924 (1122)
Q Consensus 845 k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~ 924 (1122)
.. ..+. .|-++.|..+|. +...+..|...|+++++. +..|.-+.-..+|+-|+..+-.++.. + ...
T Consensus 379 r~------KMv~---~GllP~l~~ll~--~d~~~~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk~v~~~~~~-~-vdl 444 (791)
T KOG1222|consen 379 RP------KMVN---GGLLPHLASLLD--SDTKHGIALNMLYHLSCD-DDAKAMFAYTDCIKLLMKDVLSGTGS-E-VDL 444 (791)
T ss_pred cH------HHhh---ccchHHHHHHhC--CcccchhhhhhhhhhccC-cHHHHHHHHHHHHHHHHHHHHhcCCc-e-ecH
Confidence 21 0122 245555555554 566778899999999985 44676677788999999888777653 1 122
Q ss_pred HHHHH-HHhhcCCCCCchhhhhhhhhccccccccccccCCC-CCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHhcCCc-
Q 041480 925 CCRAL-LILGGRFSFSREVANESWILKPAGFNDRCEGNSLD-NDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRK- 1001 (1122)
Q Consensus 925 Aa~AL-~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~-~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~- 1001 (1122)
+.-|| .|||-+ . ..++|+-++ ..++.+|-. +.. -+-.+-|+.+.+-.|++
T Consensus 445 ~lia~ciNl~ln----k---RNaQlvceG---qgL~~LM~ra~k~-----------------~D~lLmK~vRniSqHeg~ 497 (791)
T KOG1222|consen 445 ALIALCINLCLN----K---RNAQLVCEG---QGLDLLMERAIKS-----------------RDLLLMKVVRNISQHEGA 497 (791)
T ss_pred HHHHHHHHHHhc----c---ccceEEecC---cchHHHHHHHhcc-----------------cchHHHHHHHHhhhccch
Confidence 22222 344432 1 113332221 233333321 101 12244456666666664
Q ss_pred -----hhhHHHHHHhhcc-CCchhHHHHHHHHHHHHhhhccCCCchh-hHhhHHHhHHHHHHhhcCCCChhhHHHHHH-H
Q 041480 1002 -----RSFLETVSKILGS-RNSDLVSVCLTTVAWLSHALSAQPDAEF-QLSAFSAVISQLKEILQNGEQPQQKVLASM-S 1073 (1122)
Q Consensus 1002 -----~~~L~aL~~~l~s-~~~~l~~acL~t~aWl~~~L~~~~~t~~-~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~-a 1073 (1122)
...+..|+..++. ..-+...-||.|++=| .+||... +-.-..-|+|-+.+.|+||-...+=+|-.+ +
T Consensus 498 tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL-----~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~ 572 (791)
T KOG1222|consen 498 TQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANL-----KVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIA 572 (791)
T ss_pred HHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhc-----ccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHH
Confidence 3556777777764 4445677899998732 3455443 556667899999999999998888777554 4
Q ss_pred hhhhhCCcchhhhHHHHhhHhHHHhhhhc
Q 041480 1074 LLNFSKIPECGAVLKTIAAEIRIPLQSLT 1102 (1122)
Q Consensus 1074 L~~~~~~~~~~~~L~~~a~gi~~~Lr~L~ 1102 (1122)
+-..+.+-.|-.+|. -.++..+|-.|-
T Consensus 573 ~GT~a~d~~cA~Lla--~a~~i~tlieLL 599 (791)
T KOG1222|consen 573 CGTMARDLDCARLLA--PAKLIDTLIELL 599 (791)
T ss_pred hhhhhhhhHHHHHhC--ccccHHHHHHHH
Confidence 556666777766652 225555554443
No 50
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.26 E-value=0.00017 Score=59.09 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=35.4
Q ss_pred cccccchhc---cCCcccCCCcccchHHHHHHHHhCCCCCCCCCC
Q 041480 649 ICPLTGQLF---EEPVTLESGQTFECEAIKEWIEQGNRTCPVTGK 690 (1122)
Q Consensus 649 ~CPIc~elm---~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq 690 (1122)
.|+||.+.+ ..|++++|||+||..||..+. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999999 357888999999999999998 55778999975
No 51
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.22 E-value=0.0071 Score=78.24 Aligned_cols=306 Identities=15% Similarity=0.141 Sum_probs=185.0
Q ss_pred HHHH-HHHHHHHHhhhcchhhHHHHHhccchHHHHHHhh-----cC-------ChhHHHHHHHHHHHHHcccCccchHHH
Q 041480 784 EEKA-RVAALMCCCIEADAGCRNQMARNINVYSLLELLH-----SK-------QVKPRTNTVLLLIDLICLSRRRDVSTL 850 (1122)
Q Consensus 784 Eek~-~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~-----SG-------s~~aRenAv~aL~eLs~~~~~k~~~~~ 850 (1122)
+-+. .|+..|..++ .|++.|+..-+.|++..|-+||+ .| ....|.+|..+|.||..-+.+..+ .
T Consensus 312 ~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa--~ 388 (2195)
T KOG2122|consen 312 EHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKA--T 388 (2195)
T ss_pred chhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchh--h
Confidence 3345 3455666666 48899999999998888888774 23 245899999999999865443211 2
Q ss_pred HHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhh-hhccHHHHHHHH-hccCCChHHHHHHHHH
Q 041480 851 LRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIY-REAAVDAITVAL-EESLTDEKIQEKCCRA 928 (1122)
Q Consensus 851 L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIv-ReGAV~aLV~LL-~~g~~~~~~qe~Aa~A 928 (1122)
|. |--|.|..||..|.+.+.+...+.|.+|.||+=-.+.|-..+. +.|-|-+|+.+. +.... ..-.....|
T Consensus 389 LC-----s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kE--sTLKavLSA 461 (2195)
T KOG2122|consen 389 LC-----SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKE--STLKAVLSA 461 (2195)
T ss_pred hh-----hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhccc--chHHHHHHH
Confidence 32 3448999999999988889999999999999875555544444 578888887765 44432 355667899
Q ss_pred HHHhhcCCCCCchhhhhhhhhccccccccccccCCCCC--CCCCCCCCCCCCchhHHhHHHHHHHhHHHHhcCCch----
Q 041480 929 LLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDND--ENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRKR---- 1002 (1122)
Q Consensus 929 L~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~--~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~---- 1002 (1122)
|+||++|++.. .+-|-..-|...-+.. |..++ .+.+..+.+ +.+.+|+|..-|-..+.-
T Consensus 462 LWNLSAHcteN-----KA~iCaVDGALaFLVg-~LSY~~qs~tLaIIEs---------aGGILRNVSS~IAt~E~yRQIL 526 (2195)
T KOG2122|consen 462 LWNLSAHCTEN-----KAEICAVDGALAFLVG-TLSYEGQSNTLAIIES---------AGGILRNVSSLIATCEDYRQIL 526 (2195)
T ss_pred Hhhhhhccccc-----chhhhcccchHHHHHh-hccccCCcchhhhhhc---------CccHHHHHHhHhhccchHHHHH
Confidence 99999985442 2222222222222222 11111 111111111 334555544222221111
Q ss_pred ---hhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhC
Q 041480 1003 ---SFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSK 1079 (1122)
Q Consensus 1003 ---~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~ 1079 (1122)
..|..|---|+|-..-++.-.+.|+. ......+. +-++.=--+.++.|..++|+..-..-+ =++-+|.||+.
T Consensus 527 R~~NCLq~LLQ~LKS~SLTiVSNaCGTLW---NLSAR~p~-DQq~LwD~gAv~mLrnLIhSKhkMIa~-GSaaALrNLln 601 (2195)
T KOG2122|consen 527 RRHNCLQTLLQHLKSHSLTIVSNACGTLW---NLSARSPE-DQQMLWDDGAVPMLRNLIHSKHKMIAM-GSAAALRNLLN 601 (2195)
T ss_pred HHhhHHHHHHHHhhhcceEEeecchhhhh---hhhcCCHH-HHHHHHhcccHHHHHHHHhhhhhhhhh-hHHHHHHHHhc
Confidence 23556666666666666554445443 22233333 234445557788999999954333222 23458999999
Q ss_pred Cc---chhhhHHHHhhHh---HHHhhhhccchhhHHHHHHHHhcCC
Q 041480 1080 IP---ECGAVLKTIAAEI---RIPLQSLTEVTWTTQELCAIIAGRS 1119 (1122)
Q Consensus 1080 ~~---~~~~~L~~~a~gi---~~~Lr~L~~~tw~A~el~~~~~~~~ 1119 (1122)
.+ .|-..+|....++ ..--|++.+-+--|..+.+.+++.+
T Consensus 602 ~RPAkq~~~~~~~~g~svgsL~vrKqkale~eL~~rhsa~a~~~l~ 647 (2195)
T KOG2122|consen 602 FRPAKQASHRLMSPGSSVGSLAVRKQKALEAELDARHSAEALDNLD 647 (2195)
T ss_pred CCchhhhhhcccCccccccchhhhHHhhhccchhhhHHHHHhccCC
Confidence 85 5667777666644 3334566677778888888887654
No 52
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00024 Score=78.02 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=46.7
Q ss_pred cCCCC-CcccccccchhccCCcccCCCcccchHHHHH-HHHhCCCCCCCCCCcCCCC
Q 041480 641 LTSIP-QDFICPLTGQLFEEPVTLESGQTFECEAIKE-WIEQGNRTCPVTGKYLACP 695 (1122)
Q Consensus 641 ~~~ip-eef~CPIc~elm~DPVtl~cGhTycRscIe~-wl~~g~~tCP~trq~L~~~ 695 (1122)
+..+| .+|.|+||.+.+.+|+-++|||.||-.||.. |-.+....||+||+....+
T Consensus 208 ~pfip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 208 LPFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred CCcccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 33444 7999999999999999999999999999999 7776667799999966443
No 53
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.01 E-value=0.00053 Score=62.38 Aligned_cols=43 Identities=33% Similarity=0.726 Sum_probs=34.0
Q ss_pred CCcccccccchhccCC-------------cccCCCcccchHHHHHHHHhCCCCCCCCC
Q 041480 645 PQDFICPLTGQLFEEP-------------VTLESGQTFECEAIKEWIEQGNRTCPVTG 689 (1122)
Q Consensus 645 peef~CPIc~elm~DP-------------Vtl~cGhTycRscIe~wl~~g~~tCP~tr 689 (1122)
.++- |+||++-|.|| ++.+|||.|-..||.+|+.. +.+||+||
T Consensus 18 ~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 18 ADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp CCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 3443 99999999555 23489999999999999986 44999996
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.00 E-value=0.00052 Score=80.75 Aligned_cols=70 Identities=20% Similarity=0.408 Sum_probs=56.5
Q ss_pred cCCCCCcccccccchhccCCcc-cCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcc-hHHHHHHHHHHH
Q 041480 641 LTSIPQDFICPLTGQLFEEPVT-LESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLT-NFILKRVIDGWK 712 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVt-l~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~p-N~~Lk~lIe~w~ 712 (1122)
...+.+++.||||..++.||+. +.|||.||+.||..|... ...||.|++.+..... .| -..++++|..|.
T Consensus 15 ~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~-~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 15 GRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEE-LPVPRALRRELLKLP 86 (391)
T ss_pred CCCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhc-cCchHHHHHHHHhcc
Confidence 3347888999999999999999 499999999999999997 8899999888776553 33 235566666554
No 55
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00066 Score=79.60 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=57.8
Q ss_pred CCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCC----CcchHHHHHHHHHHHHh
Q 041480 642 TSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSL----PLTNFILKRVIDGWKSE 714 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~l----l~pN~~Lk~lIe~w~~~ 714 (1122)
..++.+|.|-||..++-.||+++|||+||..||++-+. ....||.|+.++..... ..+|+.+..+|..++..
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 45599999999999999999999999999999999666 57789999998875221 13466667778777653
No 56
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00051 Score=84.62 Aligned_cols=54 Identities=17% Similarity=0.375 Sum_probs=49.3
Q ss_pred CCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCC
Q 041480 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSL 697 (1122)
Q Consensus 644 ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~l 697 (1122)
..+-+.||+|..=++|-|++.|||.||-.||+.-+....+.||.|+..|...++
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 466789999998899999999999999999999999889999999999987764
No 57
>PRK09687 putative lyase; Provisional
Probab=96.64 E-value=0.12 Score=58.39 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=71.8
Q ss_pred cchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhcc
Q 041480 811 INVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDL 890 (1122)
Q Consensus 811 GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsl 890 (1122)
-.++.|+.+|...+...|..|+.+|..+- ...++..+..++++.++..+..|+.+|.+|..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~-------------------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRG-------------------GQDVFRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcC-------------------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 46789999999999999999999887752 12344666777888889999999999998743
Q ss_pred CCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhc
Q 041480 891 LVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGG 934 (1122)
Q Consensus 891 l~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag 934 (1122)
. .+. +..+++.|..++..... ..++..|+.+|..++.
T Consensus 84 ~---~~~---~~~a~~~L~~l~~~D~d-~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 84 A---KRC---QDNVFNILNNLALEDKS-ACVRASAINATGHRCK 120 (280)
T ss_pred C---ccc---hHHHHHHHHHHHhcCCC-HHHHHHHHHHHhcccc
Confidence 1 111 45678888887543332 3588899999888864
No 58
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.058 Score=61.79 Aligned_cols=171 Identities=10% Similarity=0.133 Sum_probs=108.6
Q ss_pred hhhhHHHhhccHHHHHHhhcCCCHH-HH---HHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhh--cCChhHHHHHHH
Q 041480 760 TNAKHLISIGGLQFLICRFESGKLE-EK---ARVAALMCCCIEADAGCRNQMARNINVYSLLELLH--SKQVKPRTNTVL 833 (1122)
Q Consensus 760 ~Nr~~IasaGaIp~LV~LL~sgs~E-ek---~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~--SGs~~aRenAv~ 833 (1122)
+-+..|++.||+..|+++++..+.. .| ..+..+|..++- ++++|..|++.|+.+.++.++. +.+...-+.++.
T Consensus 274 E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a 352 (461)
T KOG4199|consen 274 EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMA 352 (461)
T ss_pred HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHH
Confidence 3567799999999999999864432 22 346677777775 6699999999999999999773 345555566666
Q ss_pred HHHHHHcc-cCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCc--chHHHHHHHHHhhccCCChhhhhhhhhccHHHHHH
Q 041480 834 LLIDLICL-SRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPP--EQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITV 910 (1122)
Q Consensus 834 aL~eLs~~-~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~--~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~ 910 (1122)
+|.-|+.- +++. + . +.+. |+-..-+..++..+. .-|..|+.++.|+..-...++..+..-| |+.|+.
T Consensus 353 ~i~~l~LR~pdhs-a-~----~ie~---G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~ 422 (461)
T KOG4199|consen 353 IISILCLRSPDHS-A-K----AIEA---GAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIR 422 (461)
T ss_pred HHHHHHhcCcchH-H-H----HHhc---chHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHH
Confidence 66555432 3332 1 1 1222 222233333443332 3478899999999775455777677777 777776
Q ss_pred HHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhh
Q 041480 911 ALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWI 948 (1122)
Q Consensus 911 LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~L 948 (1122)
..+..-. .....|..||--|+-+ -.+.+.|-
T Consensus 423 ~A~~~h~--tce~~akaALRDLGc~-----v~lre~wt 453 (461)
T KOG4199|consen 423 TAKANHE--TCEAAAKAALRDLGCD-----VYLREEWT 453 (461)
T ss_pred HHHhcCc--cHHHHHHHHHHhcCcc-----hhhHHHhc
Confidence 6654433 2566666778778642 33455665
No 59
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=96.61 E-value=0.26 Score=58.15 Aligned_cols=253 Identities=13% Similarity=0.042 Sum_probs=163.5
Q ss_pred HHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcC-CC----HH---HHHHHHHHHHHhhhcchhhHHHHHhccchHHH
Q 041480 745 ILEQLLTVFSDQERITNAKHLISIGGLQFLICRFES-GK----LE---EKARVAALMCCCIEADAGCRNQMARNINVYSL 816 (1122)
Q Consensus 745 ~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~s-gs----~E---ek~~AaalL~~La~~D~snR~~Iae~GaI~pL 816 (1122)
+++-|...++ +...+..+++.|.+.-++.+++. .+ .+ .-..++.++..+...|++-...-+....+..+
T Consensus 244 ~feila~~ae---nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~ 320 (604)
T KOG4500|consen 244 IFEILAKAAE---NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFL 320 (604)
T ss_pred HHHHHHHHhc---CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHH
Confidence 4454544443 22356678888988888877753 11 11 12234444444444454433333333377888
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhc-----CCcchHHHHHHHHHhhccC
Q 041480 817 LELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQR-----SPPEQRPLFSILLLHLDLL 891 (1122)
Q Consensus 817 V~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqs-----gs~~~k~lAA~aLlnLsll 891 (1122)
+.-+.|.+....-.++.+|.+++.-+.+. +.+ ++. +.|.-|+.+|-. |..+.|-.+..||.||...
T Consensus 321 ~sw~~S~d~~l~t~g~LaigNfaR~D~~c--i~~----v~~---~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 321 ESWFRSDDSNLITMGSLAIGNFARRDDIC--IQL----VQK---DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred HHHhcCCchhHHHHHHHHHHhhhccchHH--HHH----HHH---HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 88889999999999999999998555543 122 222 566667766553 5677788888899999884
Q ss_pred CChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCC
Q 041480 892 VEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLP 971 (1122)
Q Consensus 892 ~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~ 971 (1122)
-+||..+..+|.+++++-.|....++ ++-+-...|-.+-- |.++....|+|-.-+.+.+.. |+...
T Consensus 392 -v~nka~~~~aGvteaIL~~lk~~~pp--v~fkllgTlrM~~d-----~qe~~a~eL~kn~~l~ekLv~------Wsks~ 457 (604)
T KOG4500|consen 392 -VSNKAHFAPAGVTEAILLQLKLASPP--VTFKLLGTLRMIRD-----SQEYIACELAKNPELFEKLVD------WSKSP 457 (604)
T ss_pred -CCchhhccccchHHHHHHHHHhcCCc--chHHHHHHHHHHHh-----chHHHHHHHhcCHHHHHHHHH------hhhCC
Confidence 46999999999999999999887775 55555666665552 466566666676666665553 43221
Q ss_pred CCCCCCCchhHHhHHHHH------HHhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHH
Q 041480 972 VDDSTPLDDEEQASEEWL------RKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVA 1028 (1122)
Q Consensus 972 ~d~~~~~~~ee~~~~~w~------rk~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~a 1028 (1122)
|....+ .|..-.-.|+ ++++..+...|+ +++++-.+.+.+.-+.--.|+++.
T Consensus 458 -D~aGv~-gESnRll~~lIkHs~~kdv~~tvpksg~---ik~~Vsm~t~~hi~mqnEalVal~ 515 (604)
T KOG4500|consen 458 -DFAGVA-GESNRLLLGLIKHSKYKDVILTVPKSGG---IKEKVSMFTKNHINMQNEALVALL 515 (604)
T ss_pred -ccchhh-hhhhHHHHHHHHhhHhhhhHhhcccccc---HHHHHHHHHHhhHHHhHHHHHHHH
Confidence 332211 2333455666 447788888886 788888888888777766666544
No 60
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.53 E-value=0.0026 Score=70.55 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=54.2
Q ss_pred ccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCC-cCCCCCCCcchHHHHHHHHHHHHh
Q 041480 648 FICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGK-YLACPSLPLTNFILKRVIDGWKSE 714 (1122)
Q Consensus 648 f~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq-~L~~~~ll~pN~~Lk~lIe~w~~~ 714 (1122)
+.||+|+.|++.||-+ +|||+||..||+..+-.-...||.|.. .+--.. |.|...-+.-|+.+...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~-l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDG-LTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhc-cCccHHHHHHHHHHHHH
Confidence 9999999999999988 899999999999988877899999964 122223 47888888888887663
No 61
>PF05536 Neurochondrin: Neurochondrin
Probab=96.45 E-value=0.042 Score=67.58 Aligned_cols=149 Identities=19% Similarity=0.110 Sum_probs=111.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhcchh---hHHHHHhccchHHHHHHhhcCC-------hhHHHHHHHHHHHHHcccC
Q 041480 774 LICRFESGKLEEKARVAALMCCCIEADAG---CRNQMARNINVYSLLELLHSKQ-------VKPRTNTVLLLIDLICLSR 843 (1122)
Q Consensus 774 LV~LL~sgs~Eek~~AaalL~~La~~D~s---nR~~Iae~GaI~pLV~LL~SGs-------~~aRenAv~aL~eLs~~~~ 843 (1122)
-+.+|+..+.++|-.++.++-++...++. .+..|.+..+...+-+||+++. ..-+.-|+.+|..++..++
T Consensus 10 c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~ 89 (543)
T PF05536_consen 10 CLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPE 89 (543)
T ss_pred HHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChh
Confidence 34566666666666666666666554432 2446888878888888998843 4466778888888876544
Q ss_pred ccchHHHHHhhhhhhhhhhHHHHHHHhhcCCc-chHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHH
Q 041480 844 RRDVSTLLRNVQNEELVNAMHVLLLYLQRSPP-EQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQ 922 (1122)
Q Consensus 844 ~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~-~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~q 922 (1122)
-+ ......+-||.|+.++..++. +....+...|..++. .+..+..+++.|+|++|++.+.++. ..+
T Consensus 90 ~a---------~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~~~---~~~ 156 (543)
T PF05536_consen 90 LA---------SSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPNQS---FQM 156 (543)
T ss_pred hh---------cCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHhCc---chH
Confidence 22 122356789999999998887 778888888888884 5679999999999999999998854 479
Q ss_pred HHHHHHHHHhhcC
Q 041480 923 EKCCRALLILGGR 935 (1122)
Q Consensus 923 e~Aa~AL~~Lag~ 935 (1122)
+.|..+|.+|...
T Consensus 157 E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 157 EIALNLLLNLLSR 169 (543)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999865
No 62
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0024 Score=71.37 Aligned_cols=50 Identities=20% Similarity=0.125 Sum_probs=45.4
Q ss_pred ccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCC
Q 041480 648 FICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSL 697 (1122)
Q Consensus 648 f~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~l 697 (1122)
-.|+||++-+.-||.+.|+|.||--||..-...+..+||+|++++.++.+
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTID 57 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchh
Confidence 36999999999999999999999999999766678899999999988764
No 63
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=96.23 E-value=0.03 Score=72.89 Aligned_cols=164 Identities=16% Similarity=0.074 Sum_probs=123.1
Q ss_pred hHHHhhccHHHHHHh-hcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhc-cchHHHHHHhh----cCChhHHHHHHHHHH
Q 041480 763 KHLISIGGLQFLICR-FESGKLEEKARVAALMCCCIEADAGCRNQMARN-INVYSLLELLH----SKQVKPRTNTVLLLI 836 (1122)
Q Consensus 763 ~~IasaGaIp~LV~L-L~sgs~Eek~~AaalL~~La~~D~snR~~Iae~-GaI~pLV~LL~----SGs~~aRenAv~aL~ 836 (1122)
..+-+.|.+..|+.. |.....-.-..++.+|++|+.+.-+||..|..- |++..||-+|. +.....-++|-..|.
T Consensus 431 kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILR 510 (2195)
T KOG2122|consen 431 KVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILR 510 (2195)
T ss_pred HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHH
Confidence 345566888888865 444443344568899999998888999999764 89999999995 345678888888898
Q ss_pred HHHcccC-ccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhcc
Q 041480 837 DLICLSR-RRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEES 915 (1122)
Q Consensus 837 eLs~~~~-~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g 915 (1122)
+.+..=. +..-.+++. -.+-|.+||..|++.+-.---.+.++|+||+.-....+..+-.-|||+-|-.|+.++
T Consensus 511 NVSS~IAt~E~yRQILR------~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK 584 (2195)
T KOG2122|consen 511 NVSSLIATCEDYRQILR------RHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK 584 (2195)
T ss_pred HHHhHhhccchHHHHHH------HhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh
Confidence 8765422 111222332 246789999999999988889999999999885555777889999999999999876
Q ss_pred CCChHHHHHHHHHHHHhhc
Q 041480 916 LTDEKIQEKCCRALLILGG 934 (1122)
Q Consensus 916 ~~~~~~qe~Aa~AL~~Lag 934 (1122)
-- ..-+-++.||.||-.
T Consensus 585 hk--MIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 585 HK--MIAMGSAAALRNLLN 601 (2195)
T ss_pred hh--hhhhhHHHHHHHHhc
Confidence 53 355667889998853
No 64
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.23 E-value=0.82 Score=55.91 Aligned_cols=303 Identities=17% Similarity=0.113 Sum_probs=180.4
Q ss_pred hHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHccc
Q 041480 763 KHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLS 842 (1122)
Q Consensus 763 ~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~ 842 (1122)
..+...+.++.++.+|...+.+....|+.+|..++.... .-..|...+.+..|..++...+...|..+..++.+++...
T Consensus 113 ~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 113 QLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred HHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC
Confidence 345567899999999988888888889999998886543 3345666666888888898877888999999999987544
Q ss_pred CccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHH
Q 041480 843 RRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQ 922 (1122)
Q Consensus 843 ~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~q 922 (1122)
... ...+.+ .|.+..++..+.+.+.-.|..+.-+|.+|+. .+.+..-+.+.|.++.|+.+|.....+. +
T Consensus 192 ~~~-----~~~~~~---sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp--~ 260 (503)
T PF10508_consen 192 PEA-----AEAVVN---SGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDP--R 260 (503)
T ss_pred HHH-----HHHHHh---ccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCC--c
Confidence 322 222232 3788999999998667779999999999998 4557777899999999999998766542 1
Q ss_pred HHHHHHHHHhhcCCCCCchhhhh---hhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHH-----HHhHH
Q 041480 923 EKCCRALLILGGRFSFSREVANE---SWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWL-----RKLSA 994 (1122)
Q Consensus 923 e~Aa~AL~~Lag~fS~sGe~~~~---~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~-----rk~a~ 994 (1122)
..+++. .|...+.|..... .++-.-..|...+.. +. ..+|.. .-+.|.+.|= -+=..
T Consensus 261 ---~~~~~l-~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~-~~--~s~d~~--------~~~~A~dtlg~igst~~G~~ 325 (503)
T PF10508_consen 261 ---LSSLLL-PGRMKFFGNLARVSPQEVLELYPAFLERLFS-ML--ESQDPT--------IREVAFDTLGQIGSTVEGKQ 325 (503)
T ss_pred ---ccchhh-hhHHHHHHHHHhcChHHHHHHHHHHHHHHHH-Hh--CCCChh--------HHHHHHHHHHHHhCCHHHHH
Confidence 111111 1211223332221 122222233333322 11 111111 1233444443 01112
Q ss_pred HH-hcCCch--hhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCC---chhhHhhH---HH-----hHHHHHHhhcC
Q 041480 995 SL-LGNRKR--SFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPD---AEFQLSAF---SA-----VISQLKEILQN 1060 (1122)
Q Consensus 995 ~L-v~~G~~--~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~---t~~~~~A~---~~-----ll~~Lv~~L~~ 1060 (1122)
.| ..+|.. .+|.++...++++..++...||=+++ ..+...++ ..+--+.. .. ..--|..+++
T Consensus 326 ~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~---~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~- 401 (503)
T PF10508_consen 326 LLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALA---SILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLK- 401 (503)
T ss_pred HHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhc-
Confidence 33 455532 67888888888999899999988777 44333333 11211111 11 1114444554
Q ss_pred CCC-hhhHHHHHHHhhhhhCCcchhhhHHHHhhHhHHHh
Q 041480 1061 GEQ-PQQKVLASMSLLNFSKIPECGAVLKTIAAEIRIPL 1098 (1122)
Q Consensus 1061 ~~~-~eer~LA~~aL~~~~~~~~~~~~L~~~a~gi~~~L 1098 (1122)
.. -|=|..|.--|..++..+-|.+.+. -..|.++-|
T Consensus 402 -qPF~elr~a~~~~l~~l~~~~Wg~~~i~-~~~gfie~l 438 (503)
T PF10508_consen 402 -QPFPELRCAAYRLLQALAAQPWGQREIC-SSPGFIEYL 438 (503)
T ss_pred -CCchHHHHHHHHHHHHHhcCHHHHHHHH-hCccHHhhh
Confidence 22 3445555556666777776655543 233455544
No 65
>PRK09687 putative lyase; Provisional
Probab=96.21 E-value=0.55 Score=53.22 Aligned_cols=207 Identities=14% Similarity=0.035 Sum_probs=121.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHH-hhcCChhHHHHHHHHHHHHHcccCccchH
Q 041480 770 GLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLEL-LHSKQVKPRTNTVLLLIDLICLSRRRDVS 848 (1122)
Q Consensus 770 aIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~L-L~SGs~~aRenAv~aL~eLs~~~~~k~~~ 848 (1122)
+++.++.++.+.+...|..++.+|..+...+. . ....++.|..+ ++..+..+|..|+.+|..+.......
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--- 125 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--- 125 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---
Confidence 44667777777888888888888775532110 0 11245666666 45667888999999988873211100
Q ss_pred HHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHH
Q 041480 849 TLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRA 928 (1122)
Q Consensus 849 ~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~A 928 (1122)
...++..|...+...++..+..|+.+|-++ ....||++|+.+|..... .++..|+.+
T Consensus 126 ----------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-----------~~~~ai~~L~~~L~d~~~--~VR~~A~~a 182 (280)
T PRK09687 126 ----------SPKIVEQSQITAFDKSTNVRFAVAFALSVI-----------NDEAAIPLLINLLKDPNG--DVRNWAAFA 182 (280)
T ss_pred ----------chHHHHHHHHHhhCCCHHHHHHHHHHHhcc-----------CCHHHHHHHHHHhcCCCH--HHHHHHHHH
Confidence 012334455556666677777777777533 224589999999986554 588888888
Q ss_pred HHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHhcCCchhhHHHH
Q 041480 929 LLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRKRSFLETV 1008 (1122)
Q Consensus 929 L~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~~~L~aL 1008 (1122)
|..++. +.+-+...|++ .+.+ ++ ++ .....+.+|-..|....+..|
T Consensus 183 Lg~~~~-----~~~~~~~~L~~------~L~D------~~------------~~-----VR~~A~~aLg~~~~~~av~~L 228 (280)
T PRK09687 183 LNSNKY-----DNPDIREAFVA------MLQD------KN------------EE-----IRIEAIIGLALRKDKRVLSVL 228 (280)
T ss_pred HhcCCC-----CCHHHHHHHHH------HhcC------CC------------hH-----HHHHHHHHHHccCChhHHHHH
Confidence 877732 22223333311 1111 10 01 122344566667777888899
Q ss_pred HHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhc
Q 041480 1009 SKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQ 1059 (1122)
Q Consensus 1009 ~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~ 1059 (1122)
.+.+.++.... .++ ..|+.+.+ ...+|.|.++++
T Consensus 229 i~~L~~~~~~~-~a~--------~ALg~ig~--------~~a~p~L~~l~~ 262 (280)
T PRK09687 229 IKELKKGTVGD-LII--------EAAGELGD--------KTLLPVLDTLLY 262 (280)
T ss_pred HHHHcCCchHH-HHH--------HHHHhcCC--------HhHHHHHHHHHh
Confidence 88888877431 111 22333333 467888888886
No 66
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.20 E-value=0.0081 Score=48.16 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=36.9
Q ss_pred hhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHH
Q 041480 801 AGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 801 ~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs 839 (1122)
++++..|.+.|++++|+.+|++++...+++|+.+|.+|+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 578889999999999999999999999999999999986
No 67
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.003 Score=70.53 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=40.4
Q ss_pred cccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 647 DFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 647 ef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
-|-|-||++.|.+||++.|||+||..|-...+.+ +..|++|.+....
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHG 287 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccccc
Confidence 4679999999999999999999999997666554 6789999987654
No 68
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.02 E-value=0.34 Score=63.12 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=52.6
Q ss_pred HHhHHHHhcCCchh-hHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHH
Q 041480 990 RKLSASLLGNRKRS-FLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKV 1068 (1122)
Q Consensus 990 rk~a~~Lv~~G~~~-~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~ 1068 (1122)
...+.+|-..|... +...|...|.+.+..+..+++-. |..+++ ...++.|+.+|. +....-|.
T Consensus 793 ~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~a-------L~~l~~--------~~a~~~L~~~L~-D~~~~VR~ 856 (897)
T PRK13800 793 AAALAALAELGCPPDDVAAATAALRASAWQVRQGAARA-------LAGAAA--------DVAVPALVEALT-DPHLDVRK 856 (897)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHH-------HHhccc--------cchHHHHHHHhc-CCCHHHHH
Confidence 34555666666543 44667778888888888877432 233332 234588888887 66788899
Q ss_pred HHHHHhhhhhCCcchhhhH
Q 041480 1069 LASMSLLNFSKIPECGAVL 1087 (1122)
Q Consensus 1069 LA~~aL~~~~~~~~~~~~L 1087 (1122)
-|..+|-.+--++..+..|
T Consensus 857 ~A~~aL~~~~~~~~a~~~L 875 (897)
T PRK13800 857 AAVLALTRWPGDPAARDAL 875 (897)
T ss_pred HHHHHHhccCCCHHHHHHH
Confidence 9999988863344444444
No 69
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.90 E-value=0.0056 Score=57.39 Aligned_cols=34 Identities=18% Similarity=0.555 Sum_probs=29.0
Q ss_pred Cccc-CCCcccchHHHHHHHHh--CCCCCCCCCCcCC
Q 041480 660 PVTL-ESGQTFECEAIKEWIEQ--GNRTCPVTGKYLA 693 (1122)
Q Consensus 660 PVtl-~cGhTycRscIe~wl~~--g~~tCP~trq~L~ 693 (1122)
|++. .|||.|-..||.+|+.. .+.+||+||++..
T Consensus 46 plv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 46 PLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 6555 99999999999999996 4679999999754
No 70
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=1.2 Score=58.05 Aligned_cols=304 Identities=16% Similarity=0.141 Sum_probs=165.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhc-chhhHHHHHhccchHHHHHHhh----cCChhHHHHHHHHHHHHHcccC
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEA-DAGCRNQMARNINVYSLLELLH----SKQVKPRTNTVLLLIDLICLSR 843 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~-D~snR~~Iae~GaI~pLV~LL~----SGs~~aRenAv~aL~eLs~~~~ 843 (1122)
+.+++|.....+.++..|+.++-+|..+... ....+ +-+..++.+|. ..+...|..|++++...+...+
T Consensus 118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~------~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ------PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLE 191 (1075)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc------hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhc
Confidence 4456677777788888899998888877642 22222 23445555553 4556699999999998877653
Q ss_pred -ccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCCh-hhhhhhhhccHHHHHHHHhccCCChHH
Q 041480 844 -RRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEP-RKYSIYREAAVDAITVALEESLTDEKI 921 (1122)
Q Consensus 844 -~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~Ep-nK~sIvReGAV~aLV~LL~~g~~~~~~ 921 (1122)
++......+.+ .-+.|.+|-..++.|.......+-.+|-.|.....+ .+..+ +..|..-.+...+...+...
T Consensus 192 ~~~~~~~~~~~l----lP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l--~~ii~~~l~Ia~n~~l~~~~ 265 (1075)
T KOG2171|consen 192 NNKSEVDKFRDL----LPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHL--SQIIQFSLEIAKNKELENSI 265 (1075)
T ss_pred cchHHHHHHHHH----hHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHhhcccccHHH
Confidence 33222211111 123444444445555555444555555555443221 11111 33455556666777766678
Q ss_pred HHHHHHHHHHhhcCCCCCchhhhhhhhhcccccccccc----ccCCCCCCCCCCCCCCCCCchh-HH---hH--------
Q 041480 922 QEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCE----GNSLDNDENDLPVDDSTPLDDE-EQ---AS-------- 985 (1122)
Q Consensus 922 qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~----~~~~~~~~~d~~~d~~~~~~~e-e~---~~-------- 985 (1122)
|..|...|..|+.. .|.+.. |.+-+...+. ..|..-...|.|......-+++ +. .+
T Consensus 266 R~~ALe~ivs~~e~-----Ap~~~k---~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA 337 (1075)
T KOG2171|consen 266 RHLALEFLVSLSEY-----APAMCK---KLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLA 337 (1075)
T ss_pred HHHHHHHHHHHHHh-----hHHHhh---hchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHH
Confidence 88888888888742 232221 2222222111 1122111112221100000000 11 11
Q ss_pred ----------------------HHHH-HH---hHHHHhcCCch--------hhHHHHHHhhccCCchhHHHHHHHHHHHH
Q 041480 986 ----------------------EEWL-RK---LSASLLGNRKR--------SFLETVSKILGSRNSDLVSVCLTTVAWLS 1031 (1122)
Q Consensus 986 ----------------------~~w~-rk---~a~~Lv~~G~~--------~~L~aL~~~l~s~~~~l~~acL~t~aWl~ 1031 (1122)
..|. || +|..-+++|-. .++...-++|.+..+++.-||+-++.=|+
T Consensus 338 ~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~s 417 (1075)
T KOG2171|consen 338 LHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMS 417 (1075)
T ss_pred hcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhh
Confidence 1222 22 22333344432 44455556666777777766665544111
Q ss_pred hhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCCcchhhhHHHHhhHhHHH
Q 041480 1032 HALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIPECGAVLKTIAAEIRIP 1097 (1122)
Q Consensus 1032 ~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~~~~~~L~~~a~gi~~~ 1097 (1122)
.-+.+ .++--+++.++|-|+..+++..+......|+.||.||+-.-.. .+|..|=.++.++
T Consensus 418 ---tdl~p-~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~ 478 (1075)
T KOG2171|consen 418 ---TDLQP-EIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEK 478 (1075)
T ss_pred ---hhhcH-HHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHH
Confidence 11122 3666777888889999999999999999999999999987422 6777777777773
No 71
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.0039 Score=76.44 Aligned_cols=48 Identities=25% Similarity=0.568 Sum_probs=42.6
Q ss_pred CCCcccccccchhccC-----CcccCCCcccchHHHHHHHHhCCCCCCCCCCcC
Q 041480 644 IPQDFICPLTGQLFEE-----PVTLESGQTFECEAIKEWIEQGNRTCPVTGKYL 692 (1122)
Q Consensus 644 ipeef~CPIc~elm~D-----PVtl~cGhTycRscIe~wl~~g~~tCP~trq~L 692 (1122)
...+-.|+||.+.|.. |=.++|||.|+-.|+..|+++ ..+||.|+..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 3457799999999988 677899999999999999998 88999999844
No 72
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.0052 Score=70.80 Aligned_cols=47 Identities=21% Similarity=0.462 Sum_probs=41.0
Q ss_pred ccccccchhccCC---cccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 648 FICPLTGQLFEEP---VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 648 f~CPIc~elm~DP---Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
+.|-||++-|++= ++|||+|.|=..||--|+.+....||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 7999999999754 4679999999999999999877789999986543
No 73
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.70 E-value=0.0049 Score=72.81 Aligned_cols=52 Identities=27% Similarity=0.335 Sum_probs=45.4
Q ss_pred CCCcccccccchhccCCcccCCCcccchHHHHHHHHh----CCCCCCCCCCcCCCC
Q 041480 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQ----GNRTCPVTGKYLACP 695 (1122)
Q Consensus 644 ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~----g~~tCP~trq~L~~~ 695 (1122)
=..+..|-+|.+.-.||+...|.|+|||.||.+|... .+.+||.|...|+-.
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3567899999999999999999999999999998764 457999998887754
No 74
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.28 Score=56.84 Aligned_cols=146 Identities=18% Similarity=0.141 Sum_probs=111.7
Q ss_pred CCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhh
Q 041480 780 SGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEEL 859 (1122)
Q Consensus 780 sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~ 859 (1122)
+.+.+.++.+..-|--++. +-+|-+.+...|++.+++..|.+.+...|+.|+.+|...+..+- + + +..+.+
T Consensus 94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP-~-~---Qe~v~E--- 164 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNP-K-S---QEQVIE--- 164 (342)
T ss_pred cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCH-H-H---HHHHHH---
Confidence 4678889988887776664 66778888899999999999999999999999999999764322 1 2 122222
Q ss_pred hhhHHHHHHHhhcCCcch-HHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhc
Q 041480 860 VNAMHVLLLYLQRSPPEQ-RPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGG 934 (1122)
Q Consensus 860 ~gaI~~Ll~lLqsgs~~~-k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag 934 (1122)
.|++..|+..+...++.. +..|..|+..|-...+|....+.+.+...+|..+|.+++.+-+.|.+++.-|..|..
T Consensus 165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 368999999988665544 466666677776666788888889888999999999876655788888877777753
No 75
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.0092 Score=65.12 Aligned_cols=39 Identities=38% Similarity=0.401 Sum_probs=34.6
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHH
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIE 679 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~ 679 (1122)
-..|.+.=+|.+|+|.++|||+.++||.|||.||.+++-
T Consensus 37 rDsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 37 RDSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 345666668999999999999999999999999999876
No 76
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=95.34 E-value=0.018 Score=46.10 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=34.1
Q ss_pred hhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhh
Q 041480 894 PRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILG 933 (1122)
Q Consensus 894 pnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~La 933 (1122)
+++..+++.|+|++|+.+|.+... .+|+.|+.||.+|+
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~~~~--~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKSPDP--EVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSSSH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCCCH--HHHHHHHHHHHHHh
Confidence 578899999999999999996554 69999999999997
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=95.19 E-value=0.01 Score=69.10 Aligned_cols=48 Identities=31% Similarity=0.603 Sum_probs=43.6
Q ss_pred ccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCCCC
Q 041480 648 FICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLACPS 696 (1122)
Q Consensus 648 f~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ 696 (1122)
|.|.|++++-++||+. .+||.|||.-|++++.. +..||+|+++|+...
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~ee 49 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEE 49 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHH
Confidence 5799999999999988 78999999999999986 778999999988655
No 78
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.92 E-value=0.011 Score=62.75 Aligned_cols=45 Identities=27% Similarity=0.476 Sum_probs=37.3
Q ss_pred cccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcC
Q 041480 647 DFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYL 692 (1122)
Q Consensus 647 ef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L 692 (1122)
-|.|-||..-++.||++.|||.||-.|-..-.. ....|-+|+...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-KGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhc-cCCcceecchhh
Confidence 499999999999999999999999999444333 367899998744
No 79
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.76 E-value=0.02 Score=64.11 Aligned_cols=53 Identities=36% Similarity=0.636 Sum_probs=43.1
Q ss_pred CCCCcccccccchhccC--C-ccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCC
Q 041480 643 SIPQDFICPLTGQLFEE--P-VTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSL 697 (1122)
Q Consensus 643 ~ipeef~CPIc~elm~D--P-Vtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~l 697 (1122)
.-...|.||||+..|.. + |.+ +|||.|+..||.+-- ....||+|++++...++
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCE
Confidence 34778999999999953 3 333 999999999999983 35679999999987764
No 80
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.62 E-value=0.16 Score=46.11 Aligned_cols=86 Identities=23% Similarity=0.251 Sum_probs=65.3
Q ss_pred hHHHHHHh-hcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccC
Q 041480 813 VYSLLELL-HSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLL 891 (1122)
Q Consensus 813 I~pLV~LL-~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll 891 (1122)
|+.|++.| .+.+...|..|+.+|.++ +...+++.|+.++++..+..+..|+.+|-++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-------------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i--- 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-------------------GDPEAIPALIELLKDEDPMVRRAAARALGRI--- 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-------------------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-------------------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh---
Confidence 57899988 778899999998888743 1124678889999888888888888877754
Q ss_pred CChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHH
Q 041480 892 VEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRAL 929 (1122)
Q Consensus 892 ~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL 929 (1122)
....+++.|+.+|.+... ..+|..|+.+|
T Consensus 59 --------~~~~~~~~L~~~l~~~~~-~~vr~~a~~aL 87 (88)
T PF13646_consen 59 --------GDPEAIPALIKLLQDDDD-EVVREAAAEAL 87 (88)
T ss_dssp --------HHHHTHHHHHHHHTC-SS-HHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHcCCCc-HHHHHHHHhhc
Confidence 346689999999987653 34688888776
No 81
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.49 E-value=0.014 Score=67.61 Aligned_cols=35 Identities=17% Similarity=0.543 Sum_probs=31.3
Q ss_pred CCcccccccchhccCCcccCCCcccchHHHHHHHH
Q 041480 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIE 679 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl~cGhTycRscIe~wl~ 679 (1122)
.+++.||||...|+||++++|||+.||.|-..-+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 57899999999999999999999999999765443
No 82
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.44 E-value=0.43 Score=54.53 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=95.1
Q ss_pred cHHHHHHhhcC--CCHHHHHHHHHHHHHhhhcchhhHHHHHh------ccchHHHHHHhhcCChhHHHHHHHHHHHHHcc
Q 041480 770 GLQFLICRFES--GKLEEKARVAALMCCCIEADAGCRNQMAR------NINVYSLLELLHSKQVKPRTNTVLLLIDLICL 841 (1122)
Q Consensus 770 aIp~LV~LL~s--gs~Eek~~AaalL~~La~~D~snR~~Iae------~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~ 841 (1122)
.+..++.+|.. .+.+....++.++..+...+......+.. .....+++.+|.+++...+..|+.+|..|.+.
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 35667777753 56677777888887776655544444433 12578999999999999999999999999876
Q ss_pred cCccchHHHHHhhhhhhhhhhHHHHHHHhhc----CCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHH-----
Q 041480 842 SRRRDVSTLLRNVQNEELVNAMHVLLLYLQR----SPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVAL----- 912 (1122)
Q Consensus 842 ~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqs----gs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL----- 912 (1122)
....... ..-+.+..++.++++ .+...+..++.+|.+|.. .+..|..+.++|.|+.|+.+|
T Consensus 136 ~~~~~~~---------~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~ 205 (312)
T PF03224_consen 136 GPKRSEK---------LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQAT 205 (312)
T ss_dssp TTT--HH---------HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH----
T ss_pred CCccccc---------hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcc
Confidence 5543221 012456677777664 233445777778888865 466999999999999999999
Q ss_pred hccCCChHHHHHHHHHHHHhhc
Q 041480 913 EESLTDEKIQEKCCRALLILGG 934 (1122)
Q Consensus 913 ~~g~~~~~~qe~Aa~AL~~Lag 934 (1122)
..+...-..+-.+..+|..|+.
T Consensus 206 ~~~~~~~Ql~Y~~ll~lWlLSF 227 (312)
T PF03224_consen 206 NSNSSGIQLQYQALLCLWLLSF 227 (312)
T ss_dssp -----HHHHHHHHHHHHHHHTT
T ss_pred cCCCCchhHHHHHHHHHHHHhc
Confidence 2333323567777778888775
No 83
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=94.36 E-value=0.16 Score=51.92 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=88.4
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccch
Q 041480 769 GGLQFLICRFE-SGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDV 847 (1122)
Q Consensus 769 GaIp~LV~LL~-sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~ 847 (1122)
|-+..||.-+. ..+.|.|+++++=|.+.+ .|+.|-..+-+...+..+|..|...+...++.++..|.+|+.+..++
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~-- 92 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA-- 92 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH--
Confidence 44455555554 357889999999999998 59999999999999999999999999999999999999997665543
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHhhcCCcch-HHHHHHHHHhhccCCChhhhhhhhhccHHHH
Q 041480 848 STLLRNVQNEELVNAMHVLLLYLQRSPPEQ-RPLFSILLLHLDLLVEPRKYSIYREAAVDAI 908 (1122)
Q Consensus 848 ~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~-k~lAA~aLlnLsll~EpnK~sIvReGAV~aL 908 (1122)
.+| ++ .++++..+..+. .+++. ---|+++|..|+-....-+..+.+..+|+.+
T Consensus 93 -~~I---~e---a~g~plii~~ls-sp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v 146 (173)
T KOG4646|consen 93 -KFI---RE---ALGLPLIIFVLS-SPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTV 146 (173)
T ss_pred -HHH---HH---hcCCceEEeecC-CChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHH
Confidence 222 22 245555444444 44444 4455666666665433345555555444443
No 84
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.034 Score=62.49 Aligned_cols=47 Identities=17% Similarity=0.393 Sum_probs=39.3
Q ss_pred ccccccchhcc--CC-cccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 648 FICPLTGQLFE--EP-VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 648 f~CPIc~elm~--DP-Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
.-|-||..=|. |- +++||.|.|-+.||.+|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 67999977763 44 4569999999999999999778899999987653
No 85
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=94.10 E-value=1.8 Score=51.45 Aligned_cols=297 Identities=13% Similarity=0.062 Sum_probs=165.2
Q ss_pred HhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcC---Ch--hHHH--HHHHHHHHH
Q 041480 766 ISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSK---QV--KPRT--NTVLLLIDL 838 (1122)
Q Consensus 766 asaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SG---s~--~aRe--nAv~aL~eL 838 (1122)
+-+|++..|..+..+.+.|..+++-..|.+.--.+.++|..+.+.|+-.-++++|+.- +. .++. -+...|.+-
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 3458899999999888777777777777765456778999999998888889999753 22 2232 334456664
Q ss_pred HcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcC--CcchHHHHHHHHHhhccC-CChhhhhhhhhccHHHHHHHHhcc
Q 041480 839 ICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRS--PPEQRPLFSILLLHLDLL-VEPRKYSIYREAAVDAITVALEES 915 (1122)
Q Consensus 839 s~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsg--s~~~k~lAA~aLlnLsll-~EpnK~sIvReGAV~aLV~LL~~g 915 (1122)
+..++. +...+.+ .|.|+.|...+--+ ..++...-....++|... .|-.+.-......+.-|+.+|...
T Consensus 164 ~l~~~~-----l~aq~~~---~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~ 235 (604)
T KOG4500|consen 164 ILDSRE-----LRAQVAD---AGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSM 235 (604)
T ss_pred hCCcHH-----HHHHHHh---cccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHh
Confidence 433221 2222333 35666555443322 112222222223344221 121122222344566678888765
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHH-
Q 041480 916 LTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSA- 994 (1122)
Q Consensus 916 ~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~- 994 (1122)
... ...+++-..|.-++-+ -.....+-++|+.+.+-++-.+ +.+.+. -+| +....+.+++
T Consensus 236 v~~-d~~eM~feila~~aen-------d~Vkl~la~~gl~e~~~~lv~~------~k~~t~---k~d--~~~l~k~~~el 296 (604)
T KOG4500|consen 236 VRE-DIDEMIFEILAKAAEN-------DLVKLSLAQNGLLEDSIDLVRN------MKDFTK---KTD--MLNLFKRIAEL 296 (604)
T ss_pred hcc-chhhHHHHHHHHHhcC-------cceeeehhhcchHHHHHHHHHh------cccccc---hHH--HHHHHHhhhhH
Confidence 532 3567777666666642 2234446778887754433221 111110 012 3333444332
Q ss_pred -HHhcCCch---------hhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCCh
Q 041480 995 -SLLGNRKR---------SFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQP 1064 (1122)
Q Consensus 995 -~Lv~~G~~---------~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~ 1064 (1122)
||+-.|.- -||..+..++.|.+..+...--..++=+. . .|.--.++-...++..|+.+|.-.+.+
T Consensus 297 ~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfa----R-~D~~ci~~v~~~~~nkL~~~l~~~~~v 371 (604)
T KOG4500|consen 297 DVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFA----R-RDDICIQLVQKDFLNKLISCLMQEKDV 371 (604)
T ss_pred hhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhh----c-cchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44444433 39999999999999988776655444111 1 122234556677788899998853333
Q ss_pred ---hhHHHHHH-HhhhhhCCcchhhhHHHHhhHhHH
Q 041480 1065 ---QQKVLASM-SLLNFSKIPECGAVLKTIAAEIRI 1096 (1122)
Q Consensus 1065 ---eer~LA~~-aL~~~~~~~~~~~~L~~~a~gi~~ 1096 (1122)
-++..|++ ||.||+--.-++..+ ...|+.+
T Consensus 372 dgnV~~qhA~lsALRnl~IPv~nka~~--~~aGvte 405 (604)
T KOG4500|consen 372 DGNVERQHACLSALRNLMIPVSNKAHF--APAGVTE 405 (604)
T ss_pred CccchhHHHHHHHHHhccccCCchhhc--cccchHH
Confidence 26777766 788887654455444 3444444
No 86
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=94.09 E-value=0.095 Score=40.93 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=35.1
Q ss_pred hhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHH
Q 041480 802 GCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 802 snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs 839 (1122)
+++..|.+.|++++|+.+|.+++...+..|+.+|.+|+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 47888899999999999999999999999999999986
No 87
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=14 Score=47.23 Aligned_cols=310 Identities=14% Similarity=0.066 Sum_probs=175.3
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcC--CCHHHHHHHHHHHHHhhhcch------hhH-------
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFES--GKLEEKARVAALMCCCIEADA------GCR------- 804 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~s--gs~Eek~~AaalL~~La~~D~------snR------- 804 (1122)
..|+..|..+.+. .|.. |.+-|.++|+..|.. .++|.-..++..|+.+...++ +.+
T Consensus 41 R~A~rgLKa~srk--------YR~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~ 111 (970)
T KOG0946|consen 41 RDAVRGLKAFSRK--------YREE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGL 111 (970)
T ss_pred HHHHHHHHHHHHH--------HHHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHH
Confidence 4455555555432 3333 444567889999963 567776677777776655453 222
Q ss_pred ----HHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHH
Q 041480 805 ----NQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPL 880 (1122)
Q Consensus 805 ----~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~l 880 (1122)
..|...+.|..|+..+..-+-.+|-+|+.+|..|..... ..+.. .|. ...-+|..|+++|...-..-+-.
T Consensus 112 ~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~-~e~q~---~ll--~~P~gIS~lmdlL~DsrE~IRNe 185 (970)
T KOG0946|consen 112 WIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP-TELQD---ALL--VSPMGISKLMDLLRDSREPIRNE 185 (970)
T ss_pred HHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC-HHHHH---HHH--HCchhHHHHHHHHhhhhhhhchh
Confidence 123346788999999988899999999999999874433 22322 222 13467888888888655444555
Q ss_pred HHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccC-CCh-HHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccc
Q 041480 881 FSILLLHLDLLVEPRKYSIYREAAVDAITVALEESL-TDE-KIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRC 958 (1122)
Q Consensus 881 AA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~-~~~-~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~ 958 (1122)
|..+|..|.......+.-++=+.|.+.|..+++... .+. -+.+.|...|.||-..+.+ ...+-+++|..+++
T Consensus 186 ~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S------NQ~~FrE~~~i~rL 259 (970)
T KOG0946|consen 186 AILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS------NQNFFREGSYIPRL 259 (970)
T ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc------hhhHHhccccHHHH
Confidence 555555555443445555555999999999996633 221 3788899999999865444 22345788888876
Q ss_pred cccCC--------CCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHhcCCch--------------hhHHHHHHhhccC-
Q 041480 959 EGNSL--------DNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRKR--------------SFLETVSKILGSR- 1015 (1122)
Q Consensus 959 ~~~~~--------~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~--------------~~L~aL~~~l~s~- 1015 (1122)
..+.. .+.|+++.+. ..-..-.+.++||.-|+. .+|..|-..+-+.
T Consensus 260 ~klL~~f~~~d~Ev~~W~~Qrv~-----------Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~ 328 (970)
T KOG0946|consen 260 LKLLSVFEFGDGEVFGWSTQRVQ-----------NVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG 328 (970)
T ss_pred HhhcCcccccCcccccccHHHHH-----------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC
Confidence 53211 1123222210 000001133334433332 1244443333332
Q ss_pred -CchhHHHHHHHHHHHHhhhccCCCc----hhhHh--hHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCCc
Q 041480 1016 -NSDLVSVCLTTVAWLSHALSAQPDA----EFQLS--AFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIP 1081 (1122)
Q Consensus 1016 -~~~l~~acL~t~aWl~~~L~~~~~t----~~~~~--A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~ 1081 (1122)
-.++..-.++|+|-+++.=...-+. .+... -+-+++--|.-|..+.-....|..-..|+..|..+.
T Consensus 329 vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 329 VPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred CcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 2345555666666555432211100 00000 133344455566665666668888888888888774
No 88
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.04 Score=63.29 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=38.8
Q ss_pred CCcccccccchhccC-------------CcccCCCcccchHHHHHHHHhCCCCCCCCCCcC
Q 041480 645 PQDFICPLTGQLFEE-------------PVTLESGQTFECEAIKEWIEQGNRTCPVTGKYL 692 (1122)
Q Consensus 645 peef~CPIc~elm~D-------------PVtl~cGhTycRscIe~wl~~g~~tCP~trq~L 692 (1122)
-+|=.|-||.+=|-. |=-+||||.+--.|+..|+++ .++||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 456689999766432 357999999999999999997 78999999885
No 89
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.82 E-value=0.043 Score=60.12 Aligned_cols=53 Identities=25% Similarity=0.404 Sum_probs=45.6
Q ss_pred CCCcccccccchhccCCc----ccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCC
Q 041480 644 IPQDFICPLTGQLFEEPV----TLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSL 697 (1122)
Q Consensus 644 ipeef~CPIc~elm~DPV----tl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~l 697 (1122)
-...|+||+|++.+.+.+ +-+|||.|+..|+++.+. +...||+|+.++...++
T Consensus 218 ~s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 218 ASKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDI 274 (303)
T ss_pred hccceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccce
Confidence 347899999999998764 349999999999999877 47899999999998875
No 90
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.64 E-value=6 Score=51.93 Aligned_cols=231 Identities=15% Similarity=0.076 Sum_probs=125.4
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccch
Q 041480 768 IGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDV 847 (1122)
Q Consensus 768 aGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~ 847 (1122)
.++++.|+..|...+...|..++..|..+.... ...+.|+.+|.+.+...|..|+.+|..+... . .
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-~---~ 716 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAG-D---A 716 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccC-C---H
Confidence 356788888887777777877777776543210 1235667777777778888888777654210 0 0
Q ss_pred HHHHHhh------------hhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhcc
Q 041480 848 STLLRNV------------QNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEES 915 (1122)
Q Consensus 848 ~~~L~~I------------~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g 915 (1122)
..++..+ ..-|.++....|+.++....+.-+..++.+|..+... ..++++.|+.+|...
T Consensus 717 ~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~---------~~~~~~~L~~ll~D~ 787 (897)
T PRK13800 717 ALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG---------GAPAGDAVRALTGDP 787 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc---------cchhHHHHHHHhcCC
Confidence 0011000 0001122233444555555555566566555544221 122356666666554
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHH-HH-hH
Q 041480 916 LTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWL-RK-LS 993 (1122)
Q Consensus 916 ~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~-rk-~a 993 (1122)
.. .+|..|+.+|..++.. ..... .| ...+. + ..|+ |. .+
T Consensus 788 d~--~VR~aA~~aLg~~g~~-----~~~~~-~l------~~aL~--------------d-----------~d~~VR~~Aa 828 (897)
T PRK13800 788 DP--LVRAAALAALAELGCP-----PDDVA-AA------TAALR--------------A-----------SAWQVRQGAA 828 (897)
T ss_pred CH--HHHHHHHHHHHhcCCc-----chhHH-HH------HHHhc--------------C-----------CChHHHHHHH
Confidence 42 4666666665555421 10000 01 00000 0 1243 22 45
Q ss_pred HHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHH
Q 041480 994 ASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMS 1073 (1122)
Q Consensus 994 ~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~a 1073 (1122)
.+|-..|...-+..|...|.+.+..+.++..-+++ .+.. ....++.|.+.|+ +.+.+-|..|..+
T Consensus 829 ~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~-------~~~~-------~~~a~~~L~~al~-D~d~~Vr~~A~~a 893 (897)
T PRK13800 829 RALAGAAADVAVPALVEALTDPHLDVRKAAVLALT-------RWPG-------DPAARDALTTALT-DSDADVRAYARRA 893 (897)
T ss_pred HHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHh-------ccCC-------CHHHHHHHHHHHh-CCCHHHHHHHHHH
Confidence 56666666667799999999999999998854333 2221 1224666777777 5667777777777
Q ss_pred hh
Q 041480 1074 LL 1075 (1122)
Q Consensus 1074 L~ 1075 (1122)
|.
T Consensus 894 L~ 895 (897)
T PRK13800 894 LA 895 (897)
T ss_pred Hh
Confidence 64
No 91
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.62 E-value=4.6 Score=46.63 Aligned_cols=241 Identities=19% Similarity=0.257 Sum_probs=132.5
Q ss_pred hHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccC-
Q 041480 813 VYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLL- 891 (1122)
Q Consensus 813 I~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll- 891 (1122)
+.-.|..|.......|+.|+..|..+....- ...++.. -....+..++..++.|..+.+.+|+.++--|++.
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~---~~d~v~~----~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl 117 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY---LPDFVED----RRETLLDALLKSLKKGKSEEQALAARALALLALTL 117 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc---cHHHHHH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc
Confidence 4455666666678889999888888763211 1122221 1234567888888888887788777766656553
Q ss_pred -CChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCC
Q 041480 892 -VEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDL 970 (1122)
Q Consensus 892 -~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~ 970 (1122)
.......+++. ..++|...+..+....+.|..|+.||..++.-. ..+.-.+...+ +.+
T Consensus 118 g~g~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~-~~d~~~~~~~~-------~~l------------ 176 (309)
T PF05004_consen 118 GAGEDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVG-GSDEEETEELM-------ESL------------ 176 (309)
T ss_pred CCCccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhh-cCChhHHHHHH-------HHH------------
Confidence 12344556664 688899999887654356667777777765310 01111111000 000
Q ss_pred CCCCCCCCchhHHhHHHHHHHhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHh
Q 041480 971 PVDDSTPLDDEEQASEEWLRKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAV 1050 (1122)
Q Consensus 971 ~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~l 1050 (1122)
...|..-+ +-+.|..+. .-...++.+..++|- +| +..|..+|+..+. ..-...
T Consensus 177 --------------e~if~~~~---~~~~~~~~~------~~~~~~~~l~~aAL~--aW-~lLlt~~~~~~~~-~~~~~~ 229 (309)
T PF05004_consen 177 --------------ESIFLLSI---LKSDGNAPV------VAAEDDAALVAAALS--AW-ALLLTTLPDSKLE-DLLEEA 229 (309)
T ss_pred --------------HHHHHHHh---cCcCCCccc------ccCCCccHHHHHHHH--HH-HHHHhcCCHHHHH-HHHHHH
Confidence 00122110 111222111 122345666777766 67 5667777775455 334556
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHhhhh---hCCcchhhhHHHHhhHhHHHhhhhccch--hhHHH
Q 041480 1051 ISQLKEILQNGEQPQQKVLASMSLLNF---SKIPECGAVLKTIAAEIRIPLQSLTEVT--WTTQE 1110 (1122)
Q Consensus 1051 l~~Lv~~L~~~~~~eer~LA~~aL~~~---~~~~~~~~~L~~~a~gi~~~Lr~L~~~t--w~A~e 1110 (1122)
+|.|+.+|++. +++-|+-|.-+|--+ ..+-+.- -.......+++-|+.|+.-. ..+|+
T Consensus 230 ~~~l~~lL~s~-d~~VRiAAGEaiAll~E~~~~~~~~-~~~~~~~~l~~~l~~La~dS~K~~sKk 292 (309)
T PF05004_consen 230 LPALSELLDSD-DVDVRIAAGEAIALLYELARDHEED-FLYEDMEELLEQLRELATDSSKSRSKK 292 (309)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhccccc-ccccCHHHHHHHHHHHHHhccCccchh
Confidence 89999999954 788999887655433 3321110 01123445666777776543 34543
No 92
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=93.46 E-value=4.1 Score=48.88 Aligned_cols=158 Identities=18% Similarity=0.235 Sum_probs=111.0
Q ss_pred HHhhccHHHHHHhhcCCCHHH--HHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcC-ChhHHHHHHHHHHHHHcc
Q 041480 765 LISIGGLQFLICRFESGKLEE--KARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSK-QVKPRTNTVLLLIDLICL 841 (1122)
Q Consensus 765 IasaGaIp~LV~LL~sgs~Ee--k~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SG-s~~aRenAv~aL~eLs~~ 841 (1122)
|.-.|+...|+++|.+.+.+. +..++.+|--|. ..+||.+|+..| +..++.+-.-. ..+.....+.+|.++-..
T Consensus 176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKH 252 (832)
T ss_pred hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence 445599999999999888887 445666665553 347899999877 55566655433 344445555666666433
Q ss_pred cCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCC-ChhhhhhhhhccHHHHHHHHhccCCChH
Q 041480 842 SRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLV-EPRKYSIYREAAVDAITVALEESLTDEK 920 (1122)
Q Consensus 842 ~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~-EpnK~sIvReGAV~aLV~LL~~g~~~~~ 920 (1122)
.+ ..+. .++ ..|++...+..++..+|..-..+|.+|-|.++.. ...+..|++..|.+=|.-|.-+. ++-
T Consensus 253 Se--et~~---~Lv---aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk--Del 322 (832)
T KOG3678|consen 253 SE--ETCQ---RLV---AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK--DEL 322 (832)
T ss_pred hH--HHHH---HHH---hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch--HHH
Confidence 22 1222 122 2477777777888889999899999999987733 45788899998888887776554 346
Q ss_pred HHHHHHHHHHHhhcC
Q 041480 921 IQEKCCRALLILGGR 935 (1122)
Q Consensus 921 ~qe~Aa~AL~~Lag~ 935 (1122)
.+-.|+-|.+.|+..
T Consensus 323 ~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 323 LRLHACLAVAVLATN 337 (832)
T ss_pred HHHHHHHHHhhhhhh
Confidence 889999999999964
No 93
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.58 Score=59.11 Aligned_cols=159 Identities=13% Similarity=0.123 Sum_probs=112.7
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHh-hcCChhHHHHHHHHHHHHHcccCccc
Q 041480 769 GGLQFLICRFE-SGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELL-HSKQVKPRTNTVLLLIDLICLSRRRD 846 (1122)
Q Consensus 769 GaIp~LV~LL~-sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL-~SGs~~aRenAv~aL~eLs~~~~~k~ 846 (1122)
-.||.||.+|. ..+.+....|..+|..+...-+..-..+++.++||.|++=| .-.-...-|.++.+|.-|+......
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A- 289 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA- 289 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH-
Confidence 46799999997 46788888887777766555555566778899999999955 4455778899999999988554421
Q ss_pred hHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHH
Q 041480 847 VSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCC 926 (1122)
Q Consensus 847 ~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa 926 (1122)
+|+ .|+|...+.|+.-=+...|..|.++..|.|..-.+.-.. +=.+|+|.|..+|...+. +.-+.++
T Consensus 290 ---iL~-------AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~-~v~ealPlL~~lLs~~D~--k~ies~~ 356 (1051)
T KOG0168|consen 290 ---ILQ-------AGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFH-FVMEALPLLTPLLSYQDK--KPIESVC 356 (1051)
T ss_pred ---HHh-------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccch-HHHHHHHHHHHHHhhccc--hhHHHHH
Confidence 222 366666666666556667777777777877632222222 335689999999988654 6889999
Q ss_pred HHHHHhhcCCCCCch
Q 041480 927 RALLILGGRFSFSRE 941 (1122)
Q Consensus 927 ~AL~~Lag~fS~sGe 941 (1122)
-+|..++-.|.-.++
T Consensus 357 ic~~ri~d~f~h~~~ 371 (1051)
T KOG0168|consen 357 ICLTRIADGFQHGPD 371 (1051)
T ss_pred HHHHHHHHhcccChH
Confidence 999999877665443
No 94
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=93.42 E-value=11 Score=45.58 Aligned_cols=181 Identities=9% Similarity=-0.052 Sum_probs=104.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcC-ChhHHHHHHHHHHHHHcccCccchH
Q 041480 770 GLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSK-QVKPRTNTVLLLIDLICLSRRRDVS 848 (1122)
Q Consensus 770 aIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SG-s~~aRenAv~aL~eLs~~~~~k~~~ 848 (1122)
....++.+|...+.=....+..+|..++.............--..-|...|.++ +...+..|+..|.+|+..+..+.+
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~- 180 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFA- 180 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHH-
Confidence 344556677655544455565566555433211100000000122344455554 477888999999999877775522
Q ss_pred HHHHhhhhhhhhhhHHHHHHHhhcCCc--chHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHH
Q 041480 849 TLLRNVQNEELVNAMHVLLLYLQRSPP--EQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCC 926 (1122)
Q Consensus 849 ~~L~~I~~eG~~gaI~~Ll~lLqsgs~--~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa 926 (1122)
|. +. +++.+|+.+|+..+. ..+=.+...+..|+-. ++.-....+.+.|+.|+++++...- +++-..+.
T Consensus 181 -f~----~~---~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~K-EKvvRv~l 250 (429)
T cd00256 181 -FV----LA---DGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLKRLSLIQDLSDILKESTK-EKVIRIVL 250 (429)
T ss_pred -HH----Hc---cCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHhhccccHHHHHHHHHHhhhh-HHHHHHHH
Confidence 22 22 367888888886542 3344455556666553 3344456678999999999998765 47888899
Q ss_pred HHHHHhhcCCCCCchhhhhhhhhcccccccccccc
Q 041480 927 RALLILGGRFSFSREVANESWILKPAGFNDRCEGN 961 (1122)
Q Consensus 927 ~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~ 961 (1122)
.+|.||.......+...+-.-++-..|+.+.+..+
T Consensus 251 ~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L 285 (429)
T cd00256 251 AIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSL 285 (429)
T ss_pred HHHHHHhhcccccchhhhHHHHHHHcChHHHHHHH
Confidence 99999986432222222222334555665544443
No 95
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.41 E-value=0.027 Score=66.11 Aligned_cols=46 Identities=20% Similarity=0.551 Sum_probs=38.0
Q ss_pred CCcccccccchhccCCc----ccCCCcccchHHHHHHHHhCCCCCCCCCCcCC
Q 041480 645 PQDFICPLTGQLFEEPV----TLESGQTFECEAIKEWIEQGNRTCPVTGKYLA 693 (1122)
Q Consensus 645 peef~CPIc~elm~DPV----tl~cGhTycRscIe~wl~~g~~tCP~trq~L~ 693 (1122)
-+--+||||++=|.+-| ++.|.|+|--+|++.||. .+||+||....
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 34458999999997765 679999999999999976 48999986444
No 96
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.28 E-value=2.9 Score=54.74 Aligned_cols=210 Identities=19% Similarity=0.191 Sum_probs=127.0
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCCh
Q 041480 815 SLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEP 894 (1122)
Q Consensus 815 pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~Ep 894 (1122)
.+-.+|.|.+...|..|+.+|..++ ..-.+ .+.+. .-..|+..+..|+...|.-|-.|..++-|++..-.|
T Consensus 352 ~l~~~l~S~~w~~R~AaL~Als~i~-EGc~~----~m~~~----l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p 422 (1075)
T KOG2171|consen 352 ALEAMLQSTEWKERHAALLALSVIA-EGCSD----VMIGN----LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP 422 (1075)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH-cccHH----HHHHH----HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH
Confidence 3334567888999999998888765 11111 11111 123566777778888899999999999999884344
Q ss_pred hhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCC
Q 041480 895 RKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDD 974 (1122)
Q Consensus 895 nK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~ 974 (1122)
.=.+-+.+-..++|+..|.+.... ++|..|+.||.++.-.+ .| ..| .+|..
T Consensus 423 ~iqk~~~e~l~~aL~~~ld~~~~~-rV~ahAa~al~nf~E~~--~~-----~~l-------~pYLd-------------- 473 (1075)
T KOG2171|consen 423 EIQKKHHERLPPALIALLDSTQNV-RVQAHAAAALVNFSEEC--DK-----SIL-------EPYLD-------------- 473 (1075)
T ss_pred HHHHHHHHhccHHHHHHhcccCch-HHHHHHHHHHHHHHHhC--cH-----HHH-------HHHHH--------------
Confidence 444456777777899999876664 89999999999987421 11 112 23332
Q ss_pred CCCCchhHHhHHHHHHHhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhh-------H
Q 041480 975 STPLDDEEQASEEWLRKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSA-------F 1047 (1122)
Q Consensus 975 ~~~~~~ee~~~~~w~rk~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A-------~ 1047 (1122)
....|.-..| +.++.+.+.-.++++++ .+-.+| +
T Consensus 474 ------------~lm~~~l~~L---------------~~~~~~~v~e~vvtaIa------------svA~AA~~~F~pY~ 514 (1075)
T KOG2171|consen 474 ------------GLMEKKLLLL---------------LQSSKPYVQEQAVTAIA------------SVADAAQEKFIPYF 514 (1075)
T ss_pred ------------HHHHHHHHHH---------------hcCCchhHHHHHHHHHH------------HHHHHHhhhhHhHH
Confidence 0111111123 33344444444444444 122223 3
Q ss_pred HHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCC--cchhhhHHHHhhHhHHHhhhh
Q 041480 1048 SAVISQLKEILQNGEQPQQKVLASMSLLNFSKI--PECGAVLKTIAAEIRIPLQSL 1101 (1122)
Q Consensus 1048 ~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~--~~~~~~L~~~a~gi~~~Lr~L 1101 (1122)
..++|-|+.+|+...+-+.|.|.--++-+++-+ .-+++.+..++..+.+.|-.+
T Consensus 515 d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~ 570 (1075)
T KOG2171|consen 515 DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLEL 570 (1075)
T ss_pred HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhh
Confidence 456678999999877666666665544333322 345577777777777766655
No 97
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.19 E-value=19 Score=46.09 Aligned_cols=163 Identities=12% Similarity=0.177 Sum_probs=94.2
Q ss_pred HHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhcccccccccc
Q 041480 880 LFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCE 959 (1122)
Q Consensus 880 lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~ 959 (1122)
.+|.+.++|+.. ++. -+.+.+||.+|++... +|......+..++ .|..++-++|-
T Consensus 306 A~aql~y~lAP~---~~~----~~i~kaLvrLLrs~~~---vqyvvL~nIa~~s---------------~~~~~lF~P~l 360 (968)
T KOG1060|consen 306 AVAQLFYHLAPK---NQV----TKIAKALVRLLRSNRE---VQYVVLQNIATIS---------------IKRPTLFEPHL 360 (968)
T ss_pred HHHhHHHhhCCH---HHH----HHHHHHHHHHHhcCCc---chhhhHHHHHHHH---------------hcchhhhhhhh
Confidence 345556666442 232 2347788888887653 5666555555554 24445545555
Q ss_pred ccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHhcCCch-hhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCC
Q 041480 960 GNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRKR-SFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQP 1038 (1122)
Q Consensus 960 ~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~-~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~ 1038 (1122)
..+. +-.+ ...-+-.|--.+-.-|++++++ .+|..|.--+++-..+++.+..-++..-...+...+
T Consensus 361 KsFf--------v~ss-----Dp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~ 427 (968)
T KOG1060|consen 361 KSFF--------VRSS-----DPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVT 427 (968)
T ss_pred hceE--------eecC-----CHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchh
Confidence 4221 1111 1133667888887888888887 678888888888888777666544443333333333
Q ss_pred CchhhHhhHHHhHHHHHHhhcCCCChhhHHHH--HHHhhhhhCC-c-chhhhHHHHhh
Q 041480 1039 DAEFQLSAFSAVISQLKEILQNGEQPQQKVLA--SMSLLNFSKI-P-ECGAVLKTIAA 1092 (1122)
Q Consensus 1039 ~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA--~~aL~~~~~~-~-~~~~~L~~~a~ 1092 (1122)
..|+..|+++|.+. ++.|++ ++.+.-|+.- | +-.++|..+++
T Consensus 428 ---------~tCL~gLv~Llssh---de~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~ 473 (968)
T KOG1060|consen 428 ---------DTCLNGLVQLLSSH---DELVVAEAVVVIKRLLQKDPAEHLEILFQLAR 473 (968)
T ss_pred ---------hHHHHHHHHHHhcc---cchhHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 44788899999876 345543 4455555544 2 22234544444
No 98
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=6.2 Score=50.45 Aligned_cols=140 Identities=15% Similarity=0.021 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHH-hhhcchhhHHHHHhccchHHHHHHhhcC-ChhHHHHHHHHHHHHHcc-cCccchHHHHHhhhhhh
Q 041480 782 KLEEKARVAALMCC-CIEADAGCRNQMARNINVYSLLELLHSK-QVKPRTNTVLLLIDLICL-SRRRDVSTLLRNVQNEE 858 (1122)
Q Consensus 782 s~Eek~~AaalL~~-La~~D~snR~~Iae~GaI~pLV~LL~SG-s~~aRenAv~aL~eLs~~-~~~k~~~~~L~~I~~eG 858 (1122)
++-+|..++..|+- +...+++.-..+.-.-.+|.||.||... ......+|+++|..|+-. ++.. ..++++
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~------a~vV~~- 253 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS------AIVVDE- 253 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh------heeecc-
Confidence 45555566555442 2222333333333344688999999764 577899999999998753 4432 123444
Q ss_pred hhhhHHHHHHHhhcCC-cchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcC
Q 041480 859 LVNAMHVLLLYLQRSP-PEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGR 935 (1122)
Q Consensus 859 ~~gaI~~Ll~lLqsgs-~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~ 935 (1122)
++|++|+.-|+.-. .+..+.+.-||--++..+ -..|.++||+-+.+.-|.=-+. .+|..|..+..|.|..
T Consensus 254 --~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~AiL~AG~l~a~LsylDFFSi--~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 254 --HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---PKAILQAGALSAVLSYLDFFSI--HAQRVALAIAANCCKS 324 (1051)
T ss_pred --cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---cHHHHhcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 78999988777543 333444444566665543 3579999999998777764333 5899999999999964
No 99
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=92.33 E-value=29 Score=42.12 Aligned_cols=157 Identities=12% Similarity=0.058 Sum_probs=101.9
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhhcchhhHHHHHh-----ccchHHHHHHhhcCChhHHHHHHHHHHHHHccc
Q 041480 769 GGLQFLICRFES-GKLEEKARVAALMCCCIEADAGCRNQMAR-----NINVYSLLELLHSKQVKPRTNTVLLLIDLICLS 842 (1122)
Q Consensus 769 GaIp~LV~LL~s-gs~Eek~~AaalL~~La~~D~snR~~Iae-----~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~ 842 (1122)
..+..++.+|.. ...+....++.++..+...++..-....+ .....+++.+|...+......|..+|..|.+..
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 456677788764 45666667777777666544332222233 246789999999888889999999998887653
Q ss_pred CccchHHHHHhhhhhhhhhhHHHHHHHhhcC-CcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHH
Q 041480 843 RRRDVSTLLRNVQNEELVNAMHVLLLYLQRS-PPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKI 921 (1122)
Q Consensus 843 ~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsg-s~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~ 921 (1122)
....-...+. -.+..|...++++ +...+..++..|..|-. .++.|..+.+.+.|+.|+.+|+....+-..
T Consensus 133 ~~~~~~~~l~--------~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql 203 (429)
T cd00256 133 LAKMEGSDLD--------YYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQL 203 (429)
T ss_pred ccccchhHHH--------HHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHH
Confidence 3210000000 0223444555554 35666667766766655 356888899988999999999875533357
Q ss_pred HHHHHHHHHHhhc
Q 041480 922 QEKCCRALLILGG 934 (1122)
Q Consensus 922 qe~Aa~AL~~Lag 934 (1122)
+-.+..+|..|+.
T Consensus 204 ~Y~~ll~lWlLSF 216 (429)
T cd00256 204 QYQSIFCIWLLTF 216 (429)
T ss_pred HHHHHHHHHHHhc
Confidence 7788888888875
No 100
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.23 E-value=0.58 Score=42.44 Aligned_cols=84 Identities=18% Similarity=0.090 Sum_probs=57.8
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHH
Q 041480 771 LQFLICRF-ESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVST 849 (1122)
Q Consensus 771 Ip~LV~LL-~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~ 849 (1122)
|+.|++.| ...+...|..++..|..+- ....++.|+++|.+.+...|..|+.+|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889988 6678888888877776321 1235899999999899999999998887641
Q ss_pred HHHhhhhhhhhhhHHHHHHHhhcCCcch-HHHHHHH
Q 041480 850 LLRNVQNEELVNAMHVLLLYLQRSPPEQ-RPLFSIL 884 (1122)
Q Consensus 850 ~L~~I~~eG~~gaI~~Ll~lLqsgs~~~-k~lAA~a 884 (1122)
.-.+++.|+.++++..... +..|+.+
T Consensus 60 ---------~~~~~~~L~~~l~~~~~~~vr~~a~~a 86 (88)
T PF13646_consen 60 ---------DPEAIPALIKLLQDDDDEVVREAAAEA 86 (88)
T ss_dssp ---------HHHTHHHHHHHHTC-SSHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHcCCCcHHHHHHHHhh
Confidence 1246677777777644332 3434433
No 101
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=92.03 E-value=0.14 Score=56.78 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=39.6
Q ss_pred CcccccccchhccCCccc-CCCcccchHHHHHHHHh-CCCCCCCCCCc
Q 041480 646 QDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQ-GNRTCPVTGKY 691 (1122)
Q Consensus 646 eef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~-g~~tCP~trq~ 691 (1122)
-.+.|||+......||+. .|||.|+|..|+.++.. -...||+-+..
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 368999999999999986 99999999999999874 35579987764
No 102
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=0.1 Score=61.80 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=40.2
Q ss_pred CCCCCcccccccchhc-----------------cCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 642 TSIPQDFICPLTGQLF-----------------EEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm-----------------~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
..+...--|+||..-. ++=+++||.|.|-+.|+++|.+.-.-.||+||++|+.
T Consensus 566 ~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 566 AFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred chhhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3455667799994332 1224569999999999999999656789999998864
No 103
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=91.87 E-value=0.28 Score=38.29 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=32.8
Q ss_pred hhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhh
Q 041480 894 PRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILG 933 (1122)
Q Consensus 894 pnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~La 933 (1122)
+++..+.+.|+|++|+.+|.+.. ...+..|+.||.+|+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~--~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSED--EEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHc
Confidence 37788899999999999998554 369999999999997
No 104
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=0.14 Score=58.45 Aligned_cols=52 Identities=27% Similarity=0.429 Sum_probs=43.3
Q ss_pred CCCCCcccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 642 TSIPQDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
...|+.=.||+|++--.+|-++ .+|+.||=.||-.|.. ....||+|+.|..-
T Consensus 295 ~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASV 347 (357)
T ss_pred cCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchH
Confidence 3457788999999988888555 6699999999999998 47899999886654
No 105
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.66 E-value=0.12 Score=57.67 Aligned_cols=49 Identities=22% Similarity=0.419 Sum_probs=41.0
Q ss_pred CCcccccccchhccCCccc-CCCcccchHHHHHHHH-hCCCCCCCCCCcCC
Q 041480 645 PQDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIE-QGNRTCPVTGKYLA 693 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~-~g~~tCP~trq~L~ 693 (1122)
..+-.||+|++.-.-|.++ +|||.||=-||..-.. ....+||.|+....
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 5678999999999999776 7999999999988544 34689999998554
No 106
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.63 E-value=1.2 Score=53.51 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=93.6
Q ss_pred HHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHH
Q 041480 790 AALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLY 869 (1122)
Q Consensus 790 aalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~l 869 (1122)
+.+|.+++. |-.--....+..-+.-||..|...+...-...+.+|..|+...+|+.. . +..|.+.-|+.+
T Consensus 284 ~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~-------M--~~~~iveKL~kl 353 (791)
T KOG1222|consen 284 VYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIV-------M--EQNGIVEKLLKL 353 (791)
T ss_pred HHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHH-------H--HhccHHHHHHHh
Confidence 345566654 322222223333455677777666666667778899999999998822 1 346788889999
Q ss_pred hhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhc
Q 041480 870 LQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGG 934 (1122)
Q Consensus 870 Lqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag 934 (1122)
.+...++.......+|+||+-... .+..++..|-+|-|+.+|.+.+. +.-|...|+.|+-
T Consensus 354 fp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~----~~iA~~~lYh~S~ 413 (791)
T KOG1222|consen 354 FPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK----HGIALNMLYHLSC 413 (791)
T ss_pred cCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc----chhhhhhhhhhcc
Confidence 888889999999999999987543 78889999999999999987543 4457778887764
No 107
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.47 E-value=1.7 Score=49.77 Aligned_cols=177 Identities=15% Similarity=0.103 Sum_probs=107.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhc----CChhHHHHHHHHHHHHHcccCcc
Q 041480 770 GLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHS----KQVKPRTNTVLLLIDLICLSRRR 845 (1122)
Q Consensus 770 aIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~S----Gs~~aRenAv~aL~eLs~~~~~k 845 (1122)
...+++++|..++.-.+..++.+|..++..++ .+..-...+.++.++..|.+ .+...+..|+.+|.+|+..+..+
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~-~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R 184 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGP-KRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYR 184 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTT-T--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC-ccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhH
Confidence 35667788887887777778878877765432 22222224577888888875 23445688999999998655543
Q ss_pred chHHHHHhhhhhhhhhhHHHHHHHh------hcCC-cchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCC
Q 041480 846 DVSTLLRNVQNEELVNAMHVLLLYL------QRSP-PEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTD 918 (1122)
Q Consensus 846 ~~~~~L~~I~~eG~~gaI~~Ll~lL------qsgs-~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~ 918 (1122)
.. |.. .+++..|+.++ .++. ...+=.+...++.|+-. ++.-..++..+.|+.|+.+++...-
T Consensus 185 ~~--f~~-------~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~K- 253 (312)
T PF03224_consen 185 QV--FWK-------SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIK- 253 (312)
T ss_dssp HH--HHT-------HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--S-
T ss_pred HH--HHh-------cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhccc-
Confidence 11 221 36778888888 2222 33345566667777653 4566778889999999999988765
Q ss_pred hHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCC
Q 041480 919 EKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSL 963 (1122)
Q Consensus 919 ~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~ 963 (1122)
+++...+..+|.||....... ... .+-..|+.+.+..+..
T Consensus 254 EKvvRv~la~l~Nl~~~~~~~---~~~--~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 254 EKVVRVSLAILRNLLSKAPKS---NIE--LMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHHHTTSSSSTT---HHH--HHHHH-HHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHhccHHH---HHH--HHHHccHHHHHHHHhc
Confidence 588999999999998642211 122 2345666565555443
No 108
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.65 E-value=0.16 Score=59.22 Aligned_cols=46 Identities=24% Similarity=0.526 Sum_probs=39.6
Q ss_pred CCCcccccccchhccC---CcccCCCcccchHHHHHHHHhCC--CCCCCCC
Q 041480 644 IPQDFICPLTGQLFEE---PVTLESGQTFECEAIKEWIEQGN--RTCPVTG 689 (1122)
Q Consensus 644 ipeef~CPIc~elm~D---PVtl~cGhTycRscIe~wl~~g~--~tCP~tr 689 (1122)
...-|.|||.++-=.| |+.+.|||..+|.+|-+-...|. ..||.|-
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 4566899999998853 79999999999999999888777 6799994
No 109
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.37 E-value=15 Score=44.46 Aligned_cols=138 Identities=14% Similarity=0.069 Sum_probs=91.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVS 848 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~ 848 (1122)
-+.+.+++++.+.+.+.|.-+--.+..+...+.+ ..+ ..+..+..=|.+.+...|..|+.+|.++. ....
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~--~~~---l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~- 111 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE--LLI---LIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEM- 111 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH--HHH---HHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHH-
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh--HHH---HHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccch-
Confidence 4456677888877887766544444444433332 111 24567777788888999999999999975 1111
Q ss_pred HHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHH
Q 041480 849 TLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRA 928 (1122)
Q Consensus 849 ~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~A 928 (1122)
+. ..++.+..++.+..+--+..|+.+++++....+ ..++.+.++.|..+|.+... .++..|..+
T Consensus 112 --~~--------~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p----~~~~~~~~~~l~~lL~d~~~--~V~~~a~~~ 175 (526)
T PF01602_consen 112 --AE--------PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP----DLVEDELIPKLKQLLSDKDP--SVVSAALSL 175 (526)
T ss_dssp --HH--------HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH----CCHHGGHHHHHHHHTTHSSH--HHHHHHHHH
T ss_pred --hh--------HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH----HHHHHHHHHHHhhhccCCcc--hhHHHHHHH
Confidence 11 234666777788888889999999998865321 12332268889999976654 588888888
Q ss_pred HHHh
Q 041480 929 LLIL 932 (1122)
Q Consensus 929 L~~L 932 (1122)
|..+
T Consensus 176 l~~i 179 (526)
T PF01602_consen 176 LSEI 179 (526)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8888
No 110
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=89.53 E-value=9.5 Score=43.58 Aligned_cols=195 Identities=18% Similarity=0.147 Sum_probs=120.9
Q ss_pred cchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhcc
Q 041480 811 INVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDL 890 (1122)
Q Consensus 811 GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsl 890 (1122)
..+..++.+|.+.+...|..|+..|..+ |..-+++.|..+|....+..+..|+-+|..+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------------------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~-- 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL-------------------GSEEAVPLLRELLSDEDPRVRDAAADALGEL-- 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh-------------------chHHHHHHHHHHhcCCCHHHHHHHHHHHHcc--
Confidence 3577888899888888888888775553 1224667888888887777777777655543
Q ss_pred CCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCC
Q 041480 891 LVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDL 970 (1122)
Q Consensus 891 l~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~ 970 (1122)
.-+.++++|+.+|.+ ..+..++..|+.+|..+..... +.+.+..+......
T Consensus 102 ---------~~~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~~~a----------------~~~l~~~l~~~~~~--- 152 (335)
T COG1413 102 ---------GDPEAVPPLVELLEN-DENEGVRAAAARALGKLGDERA----------------LDPLLEALQDEDSG--- 152 (335)
T ss_pred ---------CChhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCchhh----------------hHHHHHHhccchhh---
Confidence 335689999999996 3334699999999888875210 11112211111000
Q ss_pred CCCCCCCCchhHHhHHHHHHHhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHh
Q 041480 971 PVDDSTPLDDEEQASEEWLRKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAV 1050 (1122)
Q Consensus 971 ~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~l 1050 (1122)
+ .. ...+.....+...++..|...|....+..|-+.+.+....+..+....+.|+.... ..+
T Consensus 153 -~--a~--~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------------~~~ 214 (335)
T COG1413 153 -S--AA--AALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------------VEA 214 (335)
T ss_pred -h--hh--hhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------------hhH
Confidence 0 00 00111112344557778888888888899999999999877777766666555443 445
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHh
Q 041480 1051 ISQLKEILQNGEQPQQKVLASMSL 1074 (1122)
Q Consensus 1051 l~~Lv~~L~~~~~~eer~LA~~aL 1074 (1122)
.+.|..+++ +.....|.-++.+|
T Consensus 215 ~~~l~~~~~-~~~~~vr~~~~~~l 237 (335)
T COG1413 215 ADLLVKALS-DESLEVRKAALLAL 237 (335)
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHh
Confidence 555666665 33344444444333
No 111
>PTZ00429 beta-adaptin; Provisional
Probab=89.40 E-value=80 Score=41.05 Aligned_cols=68 Identities=13% Similarity=0.034 Sum_probs=49.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcc
Q 041480 771 LQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICL 841 (1122)
Q Consensus 771 Ip~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~ 841 (1122)
++.|.+.|...++-.|..|+-.+.++-..++ ..+.+.+-++.|.++|...+..+..+|+.+|.++...
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 3445566666777777777766666654332 3444556778899999888999999999999998643
No 112
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.28 E-value=0.23 Score=54.87 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=43.7
Q ss_pred CCCCCcccccccchhccCC----cccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCC
Q 041480 642 TSIPQDFICPLTGQLFEEP----VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSL 697 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm~DP----Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~l 697 (1122)
..-...|+|||++-.|.+- ++-+|||.|.-.++.+.. ..+||+|++.....+.
T Consensus 106 D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 106 DTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDV 162 (293)
T ss_pred ccccceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCe
Confidence 3446789999999999877 345999999999988764 5699999999987654
No 113
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=0.23 Score=58.06 Aligned_cols=60 Identities=18% Similarity=0.494 Sum_probs=45.9
Q ss_pred cccccccchhccCC-----cccCCCcccchHHHHHHHHhC-CCCCCCCCCcCCCCCCCcchHHHHHH
Q 041480 647 DFICPLTGQLFEEP-----VTLESGQTFECEAIKEWIEQG-NRTCPVTGKYLACPSLPLTNFILKRV 707 (1122)
Q Consensus 647 ef~CPIc~elm~DP-----Vtl~cGhTycRscIe~wl~~g-~~tCP~trq~L~~~~ll~pN~~Lk~l 707 (1122)
..+||||++=..=| |++.|||-|--.||++|+.+. ...||.|...-....+ .+-+.||..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i-~~e~alR~q 69 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQI-RPEYALRVQ 69 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHH-HHHHHHHHH
Confidence 45899999988767 578999999999999999742 3579999776555553 566666543
No 114
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.27 E-value=0.3 Score=59.68 Aligned_cols=61 Identities=25% Similarity=0.411 Sum_probs=42.8
Q ss_pred CCcccccccchhc----cCCcccCCCcccchHHHHHHHHhCCCCCCCCCC-c----CCCCCCCcchHHHHHHHHH
Q 041480 645 PQDFICPLTGQLF----EEPVTLESGQTFECEAIKEWIEQGNRTCPVTGK-Y----LACPSLPLTNFILKRVIDG 710 (1122)
Q Consensus 645 peef~CPIc~elm----~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq-~----L~~~~ll~pN~~Lk~lIe~ 710 (1122)
-+-++|+||...| ..||.+-||||.|+.|++.-.+ .+|| |.. . ...+. ..-|++|-+.|..
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp-~~~De~~~~~~~~e-~p~n~alL~~~~d 78 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP-TKRDEDSSLMQLKE-EPRNYALLRREHD 78 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC-CCccccchhcChhh-cchhHHHHHhhcc
Confidence 3457899998888 5999999999999999988644 5788 321 1 11223 2456777666553
No 115
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=87.78 E-value=5.9 Score=47.60 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=82.0
Q ss_pred HHHhccchHHHHHHhhcCChh--HHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHH
Q 041480 806 QMARNINVYSLLELLHSKQVK--PRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSI 883 (1122)
Q Consensus 806 ~Iae~GaI~pLV~LL~SGs~~--aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~ 883 (1122)
+|-..|.+..|+++|.+.+.+ .|..|+.+|.++... +|.. .|.+.| .|.|..|- -...+++++...|+
T Consensus 175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d------~va~~~-~~~Il~lA--K~~e~~e~aR~~~~ 244 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRD------RVARIG-LGVILNLA--KEREPVELARSVAG 244 (832)
T ss_pred HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhh------HHhhcc-chhhhhhh--hhcCcHHHHHHHHH
Confidence 444567899999999987655 499999999997643 3321 123333 44444433 23458899999999
Q ss_pred HHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcC
Q 041480 884 LLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGR 935 (1122)
Q Consensus 884 aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~ 935 (1122)
+|-++=.-.+....+++.+|.+++++---+...+ ..-..|+.||.|.+-+
T Consensus 245 il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P--~lLRH~ALAL~N~~L~ 294 (832)
T KOG3678|consen 245 ILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDP--ALLRHCALALGNCALH 294 (832)
T ss_pred HHHHHhhhhHHHHHHHHhhcccchheeecccCCH--HHHHHHHHHhhhhhhh
Confidence 9998866446677889999999987544443333 4677888899888764
No 116
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=87.06 E-value=0.21 Score=62.01 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=40.6
Q ss_pred CcccccccchhccCCcc---cCCCcccchHHHHHHHHhCCCCCCCCCCcCCCC
Q 041480 646 QDFICPLTGQLFEEPVT---LESGQTFECEAIKEWIEQGNRTCPVTGKYLACP 695 (1122)
Q Consensus 646 eef~CPIc~elm~DPVt---l~cGhTycRscIe~wl~~g~~tCP~trq~L~~~ 695 (1122)
..=.||+|..-+.|-.+ .+|+|-||.+||..|-. .-.+||+|+..+...
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhee
Confidence 44579999999988765 39999999999999976 367999999877653
No 117
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=86.64 E-value=83 Score=38.05 Aligned_cols=122 Identities=19% Similarity=0.095 Sum_probs=74.5
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccch
Q 041480 769 GGLQFLICRFES-GKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDV 847 (1122)
Q Consensus 769 GaIp~LV~LL~s-gs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~ 847 (1122)
.+++.|+..|.. .+.+.+. ++.+.+.. .++. ..+..|+..|...+...+..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~--~aa~al~~-~~~~--------~~~~~L~~~L~d~~~~vr~aaa~ALg~i--------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVA--CAALALLA-QEDA--------LDLRSVLAVLQAGPEGLCAGIQAALGWL--------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHH--HHHHHHhc-cCCh--------HHHHHHHHHhcCCCHHHHHHHHHHHhcC---------
Confidence 457778888853 3444433 23332222 1211 1378899999888887888888888653
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHH
Q 041480 848 STLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCR 927 (1122)
Q Consensus 848 ~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~ 927 (1122)
. .-.+...|+.+|.+..+..+..+..++-. -+..+.++|+.+|..... .++..|++
T Consensus 114 -------~---~~~a~~~L~~~L~~~~p~vR~aal~al~~------------r~~~~~~~L~~~L~d~d~--~Vra~A~r 169 (410)
T TIGR02270 114 -------G---GRQAEPWLEPLLAASEPPGRAIGLAALGA------------HRHDPGPALEAALTHEDA--LVRAAALR 169 (410)
T ss_pred -------C---chHHHHHHHHHhcCCChHHHHHHHHHHHh------------hccChHHHHHHHhcCCCH--HHHHHHHH
Confidence 1 12445667777776666666555433332 113356788888876554 57888888
Q ss_pred HHHHhhc
Q 041480 928 ALLILGG 934 (1122)
Q Consensus 928 AL~~Lag 934 (1122)
+|..|..
T Consensus 170 aLG~l~~ 176 (410)
T TIGR02270 170 ALGELPR 176 (410)
T ss_pred HHHhhcc
Confidence 8877764
No 118
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.63 E-value=0.41 Score=54.04 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=37.9
Q ss_pred cccccc-hhccCCc----ccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCC
Q 041480 649 ICPLTG-QLFEEPV----TLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPS 696 (1122)
Q Consensus 649 ~CPIc~-elm~DPV----tl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ 696 (1122)
-||+|. .....|- +-+|||+.|-+|+-.-+..|...||.|+..|....
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence 388883 4445552 23999999999999999999999999998776544
No 119
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=86.28 E-value=7.3 Score=48.64 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=93.4
Q ss_pred HHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCc
Q 041480 765 LISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRR 844 (1122)
Q Consensus 765 IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~ 844 (1122)
+....++.+||.+|..++.-.+..++.+|++++..=..-|+...+.|+|.-++..+...+...|.+++.+|.++......
T Consensus 415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de 494 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE 494 (678)
T ss_pred CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH
Confidence 34456778999999766666677888999999876667888888899999999999999999999999999999877665
Q ss_pred cchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhcc
Q 041480 845 RDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDL 890 (1122)
Q Consensus 845 k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsl 890 (1122)
+....+++.|. +.-++.++....+.-|+.+-.+|.||-.
T Consensus 495 ~~k~~~~~ki~-------a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 495 EEKFQLLAKIP-------ANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHHHHHHHHhh-------HHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 53333444322 3455667777788888888889999855
No 120
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=85.58 E-value=0.36 Score=56.11 Aligned_cols=48 Identities=13% Similarity=0.329 Sum_probs=41.2
Q ss_pred cccccchhccCCcccCCCcccchHHHHHHHHh-CCCCCCCCCCcCCCCC
Q 041480 649 ICPLTGQLFEEPVTLESGQTFECEAIKEWIEQ-GNRTCPVTGKYLACPS 696 (1122)
Q Consensus 649 ~CPIc~elm~DPVtl~cGhTycRscIe~wl~~-g~~tCP~trq~L~~~~ 696 (1122)
+|-||-+==+|=-+-+|||-.|-.|+..|... ++.+||.||..+..+.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 78999888788666799999999999999865 5899999999877654
No 121
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.39 E-value=0.52 Score=54.97 Aligned_cols=50 Identities=14% Similarity=0.343 Sum_probs=41.5
Q ss_pred CCcccccccchhccCCc-----c---cCCCcccchHHHHHHHHhC------CCCCCCCCCcCCC
Q 041480 645 PQDFICPLTGQLFEEPV-----T---LESGQTFECEAIKEWIEQG------NRTCPVTGKYLAC 694 (1122)
Q Consensus 645 peef~CPIc~elm~DPV-----t---l~cGhTycRscIe~wl~~g------~~tCP~trq~L~~ 694 (1122)
-.+..|-||.+...+++ . ..|-|+||..||..|-... .+.||.|+.+...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 56889999999999988 3 4799999999999998532 4789999986653
No 122
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.18 E-value=14 Score=39.89 Aligned_cols=110 Identities=17% Similarity=0.107 Sum_probs=66.5
Q ss_pred cchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhh-HHHHHHHhhcCCcchHHHHHHHHHhhc
Q 041480 811 INVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNA-MHVLLLYLQRSPPEQRPLFSILLLHLD 889 (1122)
Q Consensus 811 GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~ga-I~~Ll~lLqsgs~~~k~lAA~aLlnLs 889 (1122)
.-+++|+..+..+....+..|..+|..+...-... ... +..+...+.+.++..+..++..|..+.
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~--------------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l 159 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS--------------PKILLEILSQGLKSKNPQVREECAEWLAIIL 159 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H----------------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 35788888888888889999999999987432200 112 244445566777888888887777664
Q ss_pred cCCChhhhhhhh----hccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCC
Q 041480 890 LLVEPRKYSIYR----EAAVDAITVALEESLTDEKIQEKCCRALLILGGRF 936 (1122)
Q Consensus 890 ll~EpnK~sIvR----eGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~f 936 (1122)
.........+-. ...++.++.+|.++.. .+|+.|..++..|..++
T Consensus 160 ~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~--~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 160 EKWGSDSSVLQKSAFLKQLVKALVKLLSDADP--EVREAARECLWALYSHF 208 (228)
T ss_dssp TT-----GGG--HHHHHHHHHHHHHHHTSS-H--HHHHHHHHHHHHHHHHH
T ss_pred HHccchHhhhcccchHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHC
Confidence 422211122222 3466777788877665 59999999999997653
No 123
>PTZ00429 beta-adaptin; Provisional
Probab=85.02 E-value=1.4e+02 Score=39.04 Aligned_cols=139 Identities=13% Similarity=0.016 Sum_probs=91.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHH
Q 041480 772 QFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLL 851 (1122)
Q Consensus 772 p~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L 851 (1122)
+-.++++.+.+.+.|.=+--.|.+.+..+.+. . -.++..|..=|.+.+...|..|++.|..+- ... + +
T Consensus 71 ~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel--a---lLaINtl~KDl~d~Np~IRaLALRtLs~Ir---~~~-i---~ 138 (746)
T PTZ00429 71 VDVVKLAPSTDLELKKLVYLYVLSTARLQPEK--A---LLAVNTFLQDTTNSSPVVRALAVRTMMCIR---VSS-V---L 138 (746)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcccChHH--H---HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---cHH-H---H
Confidence 44556777777777665544454454422211 1 124667777777788889999988876652 211 1 1
Q ss_pred HhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHH
Q 041480 852 RNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLI 931 (1122)
Q Consensus 852 ~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~ 931 (1122)
. -.+.++...+...+|--+..||.+++.|-.... ..+...|-++.|.++|..... .++.+|..+|..
T Consensus 139 e--------~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp--~Vv~nAl~aL~e 205 (746)
T PTZ00429 139 E--------YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNP--VVASNAAAIVCE 205 (746)
T ss_pred H--------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCc--cHHHHHHHHHHH
Confidence 1 234566666777788889999999988744321 234457788899999987665 489999999999
Q ss_pred hhcC
Q 041480 932 LGGR 935 (1122)
Q Consensus 932 Lag~ 935 (1122)
+...
T Consensus 206 I~~~ 209 (746)
T PTZ00429 206 VNDY 209 (746)
T ss_pred HHHh
Confidence 9754
No 124
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=84.62 E-value=0.33 Score=44.75 Aligned_cols=33 Identities=18% Similarity=0.521 Sum_probs=27.4
Q ss_pred Cccc-CCCcccchHHHHHHHHh--CCCCCCCCCCcC
Q 041480 660 PVTL-ESGQTFECEAIKEWIEQ--GNRTCPVTGKYL 692 (1122)
Q Consensus 660 PVtl-~cGhTycRscIe~wl~~--g~~tCP~trq~L 692 (1122)
|.++ -|-|.|-..||.+|+.. ....||+|||..
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 5554 89999999999999985 456899999964
No 125
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=84.62 E-value=0.72 Score=39.30 Aligned_cols=44 Identities=27% Similarity=0.420 Sum_probs=25.2
Q ss_pred ccccccchhccCCccc-CCCcc--cchHHHHHHHH-hCCCCCCCCCCc
Q 041480 648 FICPLTGQLFEEPVTL-ESGQT--FECEAIKEWIE-QGNRTCPVTGKY 691 (1122)
Q Consensus 648 f~CPIc~elm~DPVtl-~cGhT--ycRscIe~wl~-~g~~tCP~trq~ 691 (1122)
+.|||+...|+-||-. .|-|. ||-....+... .+.-.||+|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 7899999999999965 77765 77766555443 456789999874
No 126
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=84.59 E-value=0.88 Score=38.61 Aligned_cols=41 Identities=24% Similarity=0.581 Sum_probs=32.1
Q ss_pred cccccch--hccCCcccCCC-----cccchHHHHHHHHh-CCCCCCCCC
Q 041480 649 ICPLTGQ--LFEEPVTLESG-----QTFECEAIKEWIEQ-GNRTCPVTG 689 (1122)
Q Consensus 649 ~CPIc~e--lm~DPVtl~cG-----hTycRscIe~wl~~-g~~tCP~tr 689 (1122)
.|-||++ --.+|.+.||. +-+=+.|+.+|+.. +..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4788876 33577777885 67899999999986 467899985
No 127
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=84.06 E-value=1.4e+02 Score=38.88 Aligned_cols=275 Identities=18% Similarity=0.133 Sum_probs=156.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHh
Q 041480 774 LICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRN 853 (1122)
Q Consensus 774 LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~ 853 (1122)
+++...+.+.|.|.=+---|..+++.+++- - -.++..+..=|.+.+...|..|+++|.-| +... ++.
T Consensus 60 ViK~~~trd~ElKrL~ylYl~~yak~~P~~-~----lLavNti~kDl~d~N~~iR~~AlR~ls~l---~~~e----l~~- 126 (757)
T COG5096 60 VIKNVATRDVELKRLLYLYLERYAKLKPEL-A----LLAVNTIQKDLQDPNEEIRGFALRTLSLL---RVKE----LLG- 126 (757)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhccCHHH-H----HHHHHHHHhhccCCCHHHHHHHHHHHHhc---ChHH----HHH-
Confidence 444444667777654444566666655421 1 12467777778888899999998888664 3322 222
Q ss_pred hhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhh
Q 041480 854 VQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILG 933 (1122)
Q Consensus 854 I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~La 933 (1122)
.+++++..++..+.+--+..||.+++.+-.+ .+.-...+|.+..+..++....+ .+..+|..+|..+.
T Consensus 127 -------~~~~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~l~~~~g~~~~l~~l~~D~dP--~Vi~nAl~sl~~i~ 194 (757)
T COG5096 127 -------NIIDPIKKLLTDPHAYVRKTAALAVAKLYRL---DKDLYHELGLIDILKELVADSDP--IVIANALASLAEID 194 (757)
T ss_pred -------HHHHHHHHHccCCcHHHHHHHHHHHHHHHhc---CHhhhhcccHHHHHHHHhhCCCc--hHHHHHHHHHHHhc
Confidence 4678999999999999999999999988544 34556678899999999988776 47777766666665
Q ss_pred cCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHH-HHh-----cCCch-hhHH
Q 041480 934 GRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSA-SLL-----GNRKR-SFLE 1006 (1122)
Q Consensus 934 g~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~-~Lv-----~~G~~-~~L~ 1006 (1122)
- + .+..|.. ..++. +. +++- .+.+. ..+|.+.+-. +|. .++.. .|.+
T Consensus 195 ~------e-~a~~~~~------~~~~~--i~------~l~~----~~~~~-~~~~~~~~~le~L~~~~~~~~~s~~~~~~ 248 (757)
T COG5096 195 P------E-LAHGYSL------EVILR--IP------QLDL----LSLSV-STEWLLLIILEVLTERVPTTPDSAEDFEE 248 (757)
T ss_pred h------h-hhhhHHH------HHHHH--hh------hccc----hhhhh-hHHHHHHHHHHHHHccCCCCCCcHHHHHH
Confidence 3 1 2222221 11111 00 0000 00111 2356655222 221 11111 3444
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCCcchhhh
Q 041480 1007 TVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIPECGAV 1086 (1122)
Q Consensus 1007 aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~~~~~~ 1086 (1122)
+++--....+.++ ++.++.-+.+.+-..++.+ .+....|+|+.+|..+..+..=++-....+-|-..+.+..+
T Consensus 249 ~~~~~~~~~n~~v---l~~av~~i~~l~~~~~~~~----~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~ 321 (757)
T COG5096 249 RLSPPLQHNNAEV---LLIAVKVILRLLVFLPSNN----LFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDK 321 (757)
T ss_pred hccchhhhCcHHH---HHHHHHHHHHHhhhhcccc----HHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHH
Confidence 4444444555544 4444555555556666654 77788889999999763444444444444444443433332
Q ss_pred -----HHHHhhHhHHHhhhhccchh
Q 041480 1087 -----LKTIAAEIRIPLQSLTEVTW 1106 (1122)
Q Consensus 1087 -----L~~~a~gi~~~Lr~L~~~tw 1106 (1122)
+..+...++..|.++--.|.
T Consensus 322 ~~~~f~~~~~~~i~~~lek~~~~t~ 346 (757)
T COG5096 322 VKKLFLIEYNDDIYIKLEKLDQLTR 346 (757)
T ss_pred HhhhhhhhccchHHHHHHHHHHHhh
Confidence 33445567777766655544
No 128
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=83.28 E-value=0.4 Score=60.48 Aligned_cols=47 Identities=23% Similarity=0.422 Sum_probs=40.0
Q ss_pred ccccccchhccCCcccCCCcccchHHHHHHHHh-CCCCCCCCCCcCCCC
Q 041480 648 FICPLTGQLFEEPVTLESGQTFECEAIKEWIEQ-GNRTCPVTGKYLACP 695 (1122)
Q Consensus 648 f~CPIc~elm~DPVtl~cGhTycRscIe~wl~~-g~~tCP~trq~L~~~ 695 (1122)
+.|+||.+ ..+||++.|||.||+.|+...+.. ....||.|+..+...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 89999999 888899999999999999998875 445799998765543
No 129
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.17 E-value=0.27 Score=54.77 Aligned_cols=48 Identities=25% Similarity=0.515 Sum_probs=37.5
Q ss_pred CcccccccchhccCCc----------ccCCCcccchHHHHHHHHh-CCCCCCCCCCcCC
Q 041480 646 QDFICPLTGQLFEEPV----------TLESGQTFECEAIKEWIEQ-GNRTCPVTGKYLA 693 (1122)
Q Consensus 646 eef~CPIc~elm~DPV----------tl~cGhTycRscIe~wl~~-g~~tCP~trq~L~ 693 (1122)
++=+|-||++=+.+-| .+.|+|.|---||..|.-- ..++||-|++...
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 4557888876665444 6899999999999999764 4679999987654
No 130
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.09 E-value=0.85 Score=53.19 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=37.6
Q ss_pred CCcccccccchhcc---CCc-ccCCCcccchHHHHHHHHhC--CCCCCCCCCcCCCCC
Q 041480 645 PQDFICPLTGQLFE---EPV-TLESGQTFECEAIKEWIEQG--NRTCPVTGKYLACPS 696 (1122)
Q Consensus 645 peef~CPIc~elm~---DPV-tl~cGhTycRscIe~wl~~g--~~tCP~trq~L~~~~ 696 (1122)
|---.|.||-+.+- |=- +-.|||+|.-.|+.+|++.. ++.||+|+-.+....
T Consensus 2 pi~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~ 59 (465)
T KOG0827|consen 2 PIMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERH 59 (465)
T ss_pred CccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccccee
Confidence 34457999966652 222 33699999999999999963 478999995555544
No 131
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=81.35 E-value=11 Score=44.61 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=96.4
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcC--CCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHH
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFES--GKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLE 818 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~s--gs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~ 818 (1122)
++...+|-++... ..-..+...+.--+++.-|.. .+..||++|+.++..+....... +.| -.|.+..+|.
T Consensus 44 a~yRilRy~i~d~------~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~-~~~-~~~vvralva 115 (371)
T PF14664_consen 44 AGYRILRYLISDE------ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP-KEI-PRGVVRALVA 115 (371)
T ss_pred HHHHHHHHHHcCH------HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc-ccC-CHHHHHHHHH
Confidence 3455566665432 344556666655566666753 45778999988887766543221 112 3356778888
Q ss_pred HhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhh
Q 041480 819 LLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYS 898 (1122)
Q Consensus 819 LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~s 898 (1122)
+....++.-|..|+..|.||+..+..- +. ..||+.+|+..+-.|+.+.....+.+++++ ++.|....
T Consensus 116 iae~~~D~lr~~cletL~El~l~~P~l--------v~---~~gG~~~L~~~l~d~~~~~~~~l~~~lL~l--Ld~p~tR~ 182 (371)
T PF14664_consen 116 IAEHEDDRLRRICLETLCELALLNPEL--------VA---ECGGIRVLLRALIDGSFSISESLLDTLLYL--LDSPRTRK 182 (371)
T ss_pred HHhCCchHHHHHHHHHHHHHHhhCHHH--------HH---HcCCHHHHHHHHHhccHhHHHHHHHHHHHH--hCCcchhh
Confidence 888888999999999999998554411 11 258899999998888766666666666665 23344444
Q ss_pred hhhhc-cHHHHHHHHhc
Q 041480 899 IYREA-AVDAITVALEE 914 (1122)
Q Consensus 899 IvReG-AV~aLV~LL~~ 914 (1122)
..+.| -++.|+.-+.+
T Consensus 183 yl~~~~dL~~l~apftd 199 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTD 199 (371)
T ss_pred hhcCCccHHHHHHhhhh
Confidence 45544 24445555443
No 132
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.86 E-value=32 Score=44.16 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=107.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcc--cCccchHH-
Q 041480 773 FLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICL--SRRRDVST- 849 (1122)
Q Consensus 773 ~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~--~~~k~~~~- 849 (1122)
.++.+|+..+.-.|.+|+.++..+. +++|-..|++ -|+..|.+-+...|...+.-+.+|+-- +++.|-+.
T Consensus 354 tIleCL~DpD~SIkrralELs~~lv--n~~Nv~~mv~-----eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idt 426 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALV--NESNVRVMVK-----ELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDT 426 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHh--ccccHHHHHH-----HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHH
Confidence 3556777777778888888887665 5566666654 678888887888999999999888743 44445444
Q ss_pred HHHhhhhhh---hhhhHHHHHHHhhcCCcchHHHHHHHHHhhccC-------------------CC-----------hhh
Q 041480 850 LLRNVQNEE---LVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLL-------------------VE-----------PRK 896 (1122)
Q Consensus 850 ~L~~I~~eG---~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll-------------------~E-----------pnK 896 (1122)
+++-+...| -...++.|+.++.++.++....+...|+.-... +| ..-
T Consensus 427 ml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p 506 (866)
T KOG1062|consen 427 MLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEP 506 (866)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCC
Confidence 444334334 235888899888888665555554444321110 01 000
Q ss_pred hhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCC
Q 041480 897 YSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFS 939 (1122)
Q Consensus 897 ~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~s 939 (1122)
..+-++.+|+.|-.++.+-..+...+..|..||+-|..+|.++
T Consensus 507 ~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~ 549 (866)
T KOG1062|consen 507 IKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS 549 (866)
T ss_pred CcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc
Confidence 1233467888898888776666679999999999999888775
No 133
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=80.59 E-value=40 Score=40.71 Aligned_cols=56 Identities=16% Similarity=0.043 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHH
Q 041480 771 LQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDL 838 (1122)
Q Consensus 771 Ip~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eL 838 (1122)
.+.|+.+|...++..+..++.++.. | .....++++.+|...+...|..|+.+|-.|
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~--------r----~~~~~~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGA--------H----RHDPGPALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHh--------h----ccChHHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 4556666665555444433333321 0 112456777788777788888888887665
No 134
>PF05536 Neurochondrin: Neurochondrin
Probab=80.37 E-value=43 Score=41.81 Aligned_cols=239 Identities=18% Similarity=0.087 Sum_probs=140.9
Q ss_pred chHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCC-------cchHHHHHHH
Q 041480 812 NVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSP-------PEQRPLFSIL 884 (1122)
Q Consensus 812 aI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs-------~~~k~lAA~a 884 (1122)
.+...+.+|++.++..|..|+.++..++..++.... ..+.|-+ ++| .+-|-.+|+++. ..-+.+|..+
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~--~~~~v~~--aig-~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQ--TRRRVFE--AIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHH--HHHHHHH--hcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 467788899999999999999999998754331111 1111221 233 345556667742 2346677777
Q ss_pred HHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCC
Q 041480 885 LLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLD 964 (1122)
Q Consensus 885 LlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~ 964 (1122)
|.-+|...+ ....---.+-||.|++++..+.. ......|..+|..++++ -. ....+++.+++ ..+-....+
T Consensus 81 L~~f~~~~~-~a~~~~~~~~IP~Lle~l~~~s~-~~~v~dalqcL~~Ias~--~~----G~~aLl~~g~v-~~L~ei~~~ 151 (543)
T PF05536_consen 81 LAAFCRDPE-LASSPQMVSRIPLLLEILSSSSD-LETVDDALQCLLAIASS--PE----GAKALLESGAV-PALCEIIPN 151 (543)
T ss_pred HHHHcCChh-hhcCHHHHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHHHcC--cH----hHHHHHhcCCH-HHHHHHHHh
Confidence 777777322 22211225569999999987765 24788899999999953 22 35566676666 444332221
Q ss_pred CCCCCCCCCCCCCCchhHHhHHHHHHHhHHH---Hh---cCCchhhHHHHHHhhcc-CCchhHHHHHHHHHHHHhhhccC
Q 041480 965 NDENDLPVDDSTPLDDEEQASEEWLRKLSAS---LL---GNRKRSFLETVSKILGS-RNSDLVSVCLTTVAWLSHALSAQ 1037 (1122)
Q Consensus 965 ~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~---Lv---~~G~~~~L~aL~~~l~s-~~~~l~~acL~t~aWl~~~L~~~ 1037 (1122)
.. ..-|.+...|+.-++.. .. ..+...++..|++-++. ....-+..|-+.. ..|...
T Consensus 152 ---------~~---~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~----~~L~~~ 215 (543)
T PF05536_consen 152 ---------QS---FQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLS----AFLPRS 215 (543)
T ss_pred ---------Cc---chHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHH----HhcCcC
Confidence 00 11345566666443210 00 11222556667666653 3344566675544 444444
Q ss_pred C---Cch-hhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCC
Q 041480 1038 P---DAE-FQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKI 1080 (1122)
Q Consensus 1038 ~---~t~-~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~ 1080 (1122)
| ... ....--..+...|.++|++.-.-++|-.|.....+++..
T Consensus 216 ~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 216 PILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred CccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3 111 345566777889999999888888888777666665554
No 135
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=80.28 E-value=27 Score=43.85 Aligned_cols=136 Identities=19% Similarity=0.191 Sum_probs=93.7
Q ss_pred HHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHH
Q 041480 804 RNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSI 883 (1122)
Q Consensus 804 R~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~ 883 (1122)
|.-......+.|||.+|+-++...+..+..+|.+|+..=.+- -..||. .|+|..|+.++..-++..+..+..
T Consensus 412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~-kskfl~-------~ngId~l~s~~~~~~~n~r~~~~~ 483 (678)
T KOG1293|consen 412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNL-KSKFLR-------NNGIDILESMLTDPDFNSRANSLW 483 (678)
T ss_pred HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccH-HHHHHH-------cCcHHHHHHHhcCCCchHHHHHHH
Confidence 333344557889999999999999999999999998652211 012443 589999999999999999999999
Q ss_pred HHHhhccCCC-hhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccc
Q 041480 884 LLLHLDLLVE-PRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGF 954 (1122)
Q Consensus 884 aLlnLsll~E-pnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~ 954 (1122)
+|.+|.-..+ ..+...++.=-..-|+.+-.+... .+||+|-..|-||.- |.--+.+.|++.-|.
T Consensus 484 ~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~--~Vqeq~fqllRNl~c-----~~~~svdfll~~~~~ 548 (678)
T KOG1293|consen 484 VLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDW--AVQEQCFQLLRNLTC-----NSRKSVDFLLEKFKD 548 (678)
T ss_pred HHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCH--HHHHHHHHHHHHhhc-----CcHHHHHHHHHhhhH
Confidence 9999977543 344444443222334555444443 599999999999942 122345666665554
No 136
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.50 E-value=22 Score=46.81 Aligned_cols=159 Identities=17% Similarity=0.219 Sum_probs=102.9
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcC---ChhHHHHHHHHHHHHHcccC
Q 041480 767 SIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSK---QVKPRTNTVLLLIDLICLSR 843 (1122)
Q Consensus 767 saGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SG---s~~aRenAv~aL~eLs~~~~ 843 (1122)
+.|..|.++++|.+...|.|.-.+-|=.++...|.+|...++...+-.-++.+|..+ +.+.|.-|+-+|..++..
T Consensus 510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n-- 587 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN-- 587 (1387)
T ss_pred ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc--
Confidence 458889999999998888887776665665556899999888776666788888763 246677777666666522
Q ss_pred ccchHHHHHhhhhhhhhhhHHHHHHHhhcCC-cchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHH
Q 041480 844 RRDVSTLLRNVQNEELVNAMHVLLLYLQRSP-PEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQ 922 (1122)
Q Consensus 844 ~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs-~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~q 922 (1122)
.+... .+.-+ -+-|.+=+..|..++ +-.+.-.+..|-.|=..-+..|-.-.|.+|.+-|+.+|+.... .+|
T Consensus 588 f~lGQ---~acl~---~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vp--EVR 659 (1387)
T KOG1517|consen 588 FKLGQ---KACLN---GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVP--EVR 659 (1387)
T ss_pred cchhH---HHhcc---ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccH--HHH
Confidence 22110 00011 123334445555442 3334444444444433234567777899999999999998655 588
Q ss_pred HHHHHHHHHhhcC
Q 041480 923 EKCCRALLILGGR 935 (1122)
Q Consensus 923 e~Aa~AL~~Lag~ 935 (1122)
..|..||-.+-+.
T Consensus 660 aAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 660 AAAVFALGTFLSN 672 (1387)
T ss_pred HHHHHHHHHHhcc
Confidence 8888888887765
No 137
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=78.88 E-value=0.53 Score=42.73 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=23.1
Q ss_pred cccccccchhcc----CCccc----CCCcccchHHHHHHHHh--CC--------CCCCCCCCcCC
Q 041480 647 DFICPLTGQLFE----EPVTL----ESGQTFECEAIKEWIEQ--GN--------RTCPVTGKYLA 693 (1122)
Q Consensus 647 ef~CPIc~elm~----DPVtl----~cGhTycRscIe~wl~~--g~--------~tCP~trq~L~ 693 (1122)
+..|+||...+. .|+++ .|+.+|=..|+.+|+.. +. ..||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 567999988754 25443 68999999999999984 21 25999998764
No 138
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=78.67 E-value=1.5 Score=51.24 Aligned_cols=50 Identities=36% Similarity=0.578 Sum_probs=44.6
Q ss_pred cccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCC
Q 041480 647 DFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSL 697 (1122)
Q Consensus 647 ef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~l 697 (1122)
...|.++...|.|||-+..|..|+-.+|.-|+++ ..+-|+++|++...+|
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dL 89 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDL 89 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccc
Confidence 3479999999999999999999999999999997 5577999999888774
No 139
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=77.70 E-value=47 Score=39.57 Aligned_cols=146 Identities=15% Similarity=0.111 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhc--CChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhh
Q 041480 781 GKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHS--KQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEE 858 (1122)
Q Consensus 781 gs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~S--Gs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG 858 (1122)
.+.+.+..+..++.-+.. |...-..+.+..----++..|.. .....|+.|+.++..+....... . +-
T Consensus 37 ~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~--~--------~~ 105 (371)
T PF14664_consen 37 DSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP--K--------EI 105 (371)
T ss_pred CcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc--c--------cC
Confidence 345555555556655554 54444444444333355666654 35679999999999987553311 0 01
Q ss_pred hhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCC
Q 041480 859 LVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSF 938 (1122)
Q Consensus 859 ~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~ 938 (1122)
..|.+..++.+..+.+..-+..+..+|+.|+..+. .-+++.|++.+|++.+.++..+ ..+....+++-|-.
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~--~~~~l~~~lL~lLd---- 176 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFS--ISESLLDTLLYLLD---- 176 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHh--HHHHHHHHHHHHhC----
Confidence 34677788888787677778888889999988633 4567899999999999887663 56666666666664
Q ss_pred Cchhhhhhhh
Q 041480 939 SREVANESWI 948 (1122)
Q Consensus 939 sGe~~~~~~L 948 (1122)
.|.+|.++
T Consensus 177 --~p~tR~yl 184 (371)
T PF14664_consen 177 --SPRTRKYL 184 (371)
T ss_pred --Ccchhhhh
Confidence 45566665
No 140
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=77.65 E-value=1.4 Score=50.17 Aligned_cols=48 Identities=31% Similarity=0.551 Sum_probs=38.9
Q ss_pred CCCCcccccccchhcc---CCcccCCCcccchHHHHHHHHhCC--CCCCCCCC
Q 041480 643 SIPQDFICPLTGQLFE---EPVTLESGQTFECEAIKEWIEQGN--RTCPVTGK 690 (1122)
Q Consensus 643 ~ipeef~CPIc~elm~---DPVtl~cGhTycRscIe~wl~~g~--~tCP~trq 690 (1122)
....-|+||+..+.-. -||++.|||..-+.++..-.+.|. ..||.|-.
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 3456799999998885 489999999999999888777664 46999943
No 141
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=76.48 E-value=59 Score=39.86 Aligned_cols=157 Identities=14% Similarity=0.069 Sum_probs=99.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhc---chhhHHHHHhccchHHHHHHhhcCC-------hhHHHHHHHHHHHHHcccC
Q 041480 774 LICRFESGKLEEKARVAALMCCCIEA---DAGCRNQMARNINVYSLLELLHSKQ-------VKPRTNTVLLLIDLICLSR 843 (1122)
Q Consensus 774 LV~LL~sgs~Eek~~AaalL~~La~~---D~snR~~Iae~GaI~pLV~LL~SGs-------~~aRenAv~aL~eLs~~~~ 843 (1122)
+..++...+.++|-.++-+.-...+. +.-+|+.|.++.+.+.+=+||.+++ ..-+..++.+|.-.+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 33444455666666555444455443 2346788989888888888997643 4567778888877765554
Q ss_pred ccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcch-------HHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccC
Q 041480 844 RRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQ-------RPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESL 916 (1122)
Q Consensus 844 ~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~-------k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~ 916 (1122)
-. ..+..++.|+.|+.++..+...- -.++=-.|..++. +|+..+.+...|+|+++-++-...+
T Consensus 96 lA---------sh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-~e~G~~~Lia~G~~~~~~Q~y~~~~ 165 (698)
T KOG2611|consen 96 LA---------SHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-AEAGLMTLIASGGLRVIAQMYELPD 165 (698)
T ss_pred hc---------cCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-CCchhHHHHhcCchHHHHHHHhCCC
Confidence 22 11235688999999988764332 1122223444444 4888899999999999876654433
Q ss_pred CChHHHHHHHHHHHHhh-cCCCCCch
Q 041480 917 TDEKIQEKCCRALLILG-GRFSFSRE 941 (1122)
Q Consensus 917 ~~~~~qe~Aa~AL~~La-g~fS~sGe 941 (1122)
++ ..+..|..+|+.+. +...|+-.
T Consensus 166 ~~-~d~alal~Vlll~~~~~~cw~e~ 190 (698)
T KOG2611|consen 166 GS-HDMALALKVLLLLVSKLDCWSET 190 (698)
T ss_pred Cc-hhHHHHHHHHHHHHHhcccCcCC
Confidence 33 35788888888775 55555543
No 142
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.47 E-value=1.1 Score=51.60 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=39.8
Q ss_pred CcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 646 QDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 646 eef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
++=+||||.-=-...|..||||.-|..||.+++. +.+.|-.|+.....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHh-cCCeeeEecceeee
Confidence 6779999987666778889999999999999987 46788888775544
No 143
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=75.79 E-value=27 Score=39.86 Aligned_cols=124 Identities=19% Similarity=0.108 Sum_probs=81.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhh-cCChhHHHHHHHHHHHHHcccCccch
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLH-SKQVKPRTNTVLLLIDLICLSRRRDV 847 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~-SGs~~aRenAv~aL~eLs~~~~~k~~ 847 (1122)
-+++.|..+|...+...+..++..|..+- ...++++|+.+|. ..+..+|..|+.+|..+- .
T Consensus 74 ~av~~l~~~l~d~~~~vr~~a~~aLg~~~-----------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~---~---- 135 (335)
T COG1413 74 EAVPLLRELLSDEDPRVRDAAADALGELG-----------DPEAVPPLVELLENDENEGVRAAAARALGKLG---D---- 135 (335)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccC-----------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC---c----
Confidence 35677888888777766766666554321 2346899999998 488899999999998862 1
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHhhcCCcc------------hHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhcc
Q 041480 848 STLLRNVQNEELVNAMHVLLLYLQRSPPE------------QRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEES 915 (1122)
Q Consensus 848 ~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~------------~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g 915 (1122)
..++.+|+..++..... .+..++.+|. .+....+++.|+..|...
T Consensus 136 ------------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~-----------~~~~~~~~~~l~~~l~~~ 192 (335)
T COG1413 136 ------------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG-----------ELGDPEAIPLLIELLEDE 192 (335)
T ss_pred ------------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH-----------HcCChhhhHHHHHHHhCc
Confidence 12355666666643311 1222222222 234466789999999876
Q ss_pred CCChHHHHHHHHHHHHhhcC
Q 041480 916 LTDEKIQEKCCRALLILGGR 935 (1122)
Q Consensus 916 ~~~~~~qe~Aa~AL~~Lag~ 935 (1122)
.. .+|..|+.+|..+++.
T Consensus 193 ~~--~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 193 DA--DVRRAAASALGQLGSE 210 (335)
T ss_pred hH--HHHHHHHHHHHHhhcc
Confidence 54 5899999999988864
No 144
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.40 E-value=1.7 Score=50.48 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=38.6
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcC
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYL 692 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L 692 (1122)
+...|..-.|-||.+=..+-|-+||||..| |+.-.. ...+||+|++.+
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI 346 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRI 346 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHH
Confidence 445678889999999999999999999988 655543 356799999854
No 145
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=75.30 E-value=1.8 Score=55.27 Aligned_cols=46 Identities=13% Similarity=0.427 Sum_probs=35.8
Q ss_pred cccccccchhcc-----CCcc--cCCCcccchHHHHHHHHh-CCCCCCCCCCcC
Q 041480 647 DFICPLTGQLFE-----EPVT--LESGQTFECEAIKEWIEQ-GNRTCPVTGKYL 692 (1122)
Q Consensus 647 ef~CPIc~elm~-----DPVt--l~cGhTycRscIe~wl~~-g~~tCP~trq~L 692 (1122)
.=-|+||.-++. =|-- -+|.|-|--+|+-+|+.. ++.+||+||-.+
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 336999988874 3322 267899999999999996 678999999644
No 146
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.18 E-value=2.6 Score=47.81 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=49.7
Q ss_pred ccccccchhcc------CCcccCCCcccchHHHHHHHHhCCCCCCCCCCcC--CC---CCCCcchHHHHHHHHHH
Q 041480 648 FICPLTGQLFE------EPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYL--AC---PSLPLTNFILKRVIDGW 711 (1122)
Q Consensus 648 f~CPIc~elm~------DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L--~~---~~ll~pN~~Lk~lIe~w 711 (1122)
+.|-||.+-+. -|=++.|||++|-.|+......+...||.||.+. .. .. +..|..|..+|+..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~-l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKS-LQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhh-hhhhHHHHHHHHHH
Confidence 56888877774 4667889999999999988887788899999973 22 23 47888888888875
No 147
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=74.66 E-value=1.2 Score=58.54 Aligned_cols=48 Identities=15% Similarity=0.456 Sum_probs=41.2
Q ss_pred CCCCCcccccccchhcc-CCcccCCCcccchHHHHHHHHhCCCCCCCCCC
Q 041480 642 TSIPQDFICPLTGQLFE-EPVTLESGQTFECEAIKEWIEQGNRTCPVTGK 690 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm~-DPVtl~cGhTycRscIe~wl~~g~~tCP~trq 690 (1122)
...-..+.|+||+++|+ --.+..|||.||..|++-|+.. ...||.|+.
T Consensus 1148 ~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ks 1196 (1394)
T KOG0298|consen 1148 MNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKS 1196 (1394)
T ss_pred HHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhh
Confidence 33456779999999999 6778899999999999999985 678999974
No 148
>PF04641 Rtf2: Rtf2 RING-finger
Probab=73.17 E-value=3.3 Score=46.53 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=33.5
Q ss_pred CCCcccccccchhccCCccc-CCCcccchHHHHHHHHhC
Q 041480 644 IPQDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQG 681 (1122)
Q Consensus 644 ipeef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g 681 (1122)
.-.+..|+|+++.|.+||+. .-|+-|++.+|..|+...
T Consensus 31 ~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 31 EARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred hCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 34588999999999999875 789999999999998863
No 149
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=72.97 E-value=1.4 Score=55.31 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=51.2
Q ss_pred CCCcccccccchhccCCcccCCCcccchHHHHH--HHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHH
Q 041480 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKE--WIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKS 713 (1122)
Q Consensus 644 ipeef~CPIc~elm~DPVtl~cGhTycRscIe~--wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~ 713 (1122)
+.-++.||||.+...+|+++.|-|.||+.|+-. |+..+...||+|+........ ..-+.-.++++....
T Consensus 18 ~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~-~Es~r~sq~vqe~lk 88 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSL-RESPRFSQLSKESLK 88 (684)
T ss_pred HhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhc-cccchHHHHHHHhcC
Confidence 345678999999999999999999999999777 344567789999966655442 333445566664433
No 150
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=72.96 E-value=88 Score=36.30 Aligned_cols=152 Identities=17% Similarity=0.147 Sum_probs=76.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhhc--chhhHHHHHhccchHHHHHHhhcCC--hhHHHHHHHHHHHHHcccCc-
Q 041480 770 GLQFLICRFESGKLEEKARVAALMCCCIEA--DAGCRNQMARNINVYSLLELLHSKQ--VKPRTNTVLLLIDLICLSRR- 844 (1122)
Q Consensus 770 aIp~LV~LL~sgs~Eek~~AaalL~~La~~--D~snR~~Iae~GaI~pLV~LL~SGs--~~aRenAv~aL~eLs~~~~~- 844 (1122)
.+..+.+.++.|..+++.-|+.++..++.. .+.....|.+. ..|.|..++..++ ...|..++.+|.-++.....
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d 165 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSD 165 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC
Confidence 345566777777777766555554433332 12333344442 4567777887654 45666666555544433221
Q ss_pred -cchHHHHHhhhhhhhhhhHH--HHHHHhhcC-C------cchHHHHHHHHHhh---ccCCChhhhhhhhhccHHHHHHH
Q 041480 845 -RDVSTLLRNVQNEELVNAMH--VLLLYLQRS-P------PEQRPLFSILLLHL---DLLVEPRKYSIYREAAVDAITVA 911 (1122)
Q Consensus 845 -k~~~~~L~~I~~eG~~gaI~--~Ll~lLqsg-s------~~~k~lAA~aLlnL---sll~EpnK~sIvReGAV~aLV~L 911 (1122)
..+.. .+..|. .++.+++.+ . +....+.++||..- ....++.+..-.-+.+++.|+.+
T Consensus 166 ~~~~~~---------~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~l 236 (309)
T PF05004_consen 166 EEETEE---------LMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSEL 236 (309)
T ss_pred hhHHHH---------HHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 11110 112233 222233322 1 11112222222211 11223333333336689999999
Q ss_pred HhccCCChHHHHHHHHHHHHhh
Q 041480 912 LEESLTDEKIQEKCCRALLILG 933 (1122)
Q Consensus 912 L~~g~~~~~~qe~Aa~AL~~La 933 (1122)
|.+... .+|..|..+|..|-
T Consensus 237 L~s~d~--~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 237 LDSDDV--DVRIAAGEAIALLY 256 (309)
T ss_pred hcCCCH--HHHHHHHHHHHHHH
Confidence 998765 59999999988884
No 151
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=72.40 E-value=2.7 Score=35.81 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=22.4
Q ss_pred ccccchhcc--CCcc--cCCCcccchHHHHHHHHhCCCCCCCCCCcC
Q 041480 650 CPLTGQLFE--EPVT--LESGQTFECEAIKEWIEQGNRTCPVTGKYL 692 (1122)
Q Consensus 650 CPIc~elm~--DPVt--l~cGhTycRscIe~wl~~g~~tCP~trq~L 692 (1122)
||+|.+-|. |--. -+||+-+||.|..+-...++..||-|+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 788888882 2222 288999999998887766788999999864
No 152
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=72.11 E-value=24 Score=42.65 Aligned_cols=154 Identities=16% Similarity=0.125 Sum_probs=91.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCc--cch
Q 041480 770 GLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRR--RDV 847 (1122)
Q Consensus 770 aIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~--k~~ 847 (1122)
.++.+..+|.+.++-.|..|+..+..+...+++ .+... -++.+..+|...+...+..|+.+|.++-+.++. ...
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~ 190 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLI 190 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhH
Confidence 456777888888888888888888777654432 22222 478888999888899999999999998111111 000
Q ss_pred HHHHHhhh----------------------hh---hh--hhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhh
Q 041480 848 STLLRNVQ----------------------NE---EL--VNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIY 900 (1122)
Q Consensus 848 ~~~L~~I~----------------------~e---G~--~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIv 900 (1122)
..++..+. .. .. ...+..+..++++..+.-.-.++.++..+... . . .
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~-~-~----~ 264 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS-P-E----L 264 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-H-H----H
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-h-H----H
Confidence 00111111 00 01 12444444555544444444455555544321 1 1 4
Q ss_pred hhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcC
Q 041480 901 REAAVDAITVALEESLTDEKIQEKCCRALLILGGR 935 (1122)
Q Consensus 901 ReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~ 935 (1122)
...++++|+.+|.+... +.|-.+..+|..|+..
T Consensus 265 ~~~~~~~L~~lL~s~~~--nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 265 LQKAINPLIKLLSSSDP--NVRYIALDSLSQLAQS 297 (526)
T ss_dssp HHHHHHHHHHHHTSSSH--HHHHHHHHHHHHHCCH
T ss_pred HHhhHHHHHHHhhcccc--hhehhHHHHHHHhhcc
Confidence 55678888888874432 5788888888888764
No 153
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=71.29 E-value=16 Score=38.05 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=67.1
Q ss_pred hhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHH
Q 041480 760 TNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 760 ~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs 839 (1122)
-|=.++.+..++...|..|...+.-..+..++-|+++- .|..|.+.|.+.++++.++..|.+.....-..|+.+|.-|+
T Consensus 49 ~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC-~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 49 INYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLC-LDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred chHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhc-cChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhc
Confidence 36667888888889998888777777778888887765 38899999999999999999998887777788888887775
Q ss_pred cccCcc
Q 041480 840 CLSRRR 845 (1122)
Q Consensus 840 ~~~~~k 845 (1122)
...++
T Consensus 128 -~~~Rt 132 (173)
T KOG4646|consen 128 -FGERT 132 (173)
T ss_pred -Ccccc
Confidence 43433
No 154
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=70.87 E-value=3.2 Score=38.83 Aligned_cols=44 Identities=20% Similarity=0.472 Sum_probs=32.5
Q ss_pred cccccchhcc----CCccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCC
Q 041480 649 ICPLTGQLFE----EPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLA 693 (1122)
Q Consensus 649 ~CPIc~elm~----DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~ 693 (1122)
.||-|+-=|. =||+- .|.|.|--.||.+|+.. ...||+++|+..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 4555554441 13444 89999999999999997 778999999653
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=70.77 E-value=2.8 Score=48.17 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=36.3
Q ss_pred CCcccccccchhcc--CC--cccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCC
Q 041480 645 PQDFICPLTGQLFE--EP--VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACP 695 (1122)
Q Consensus 645 peef~CPIc~elm~--DP--Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~ 695 (1122)
.+++ ||+|.+.|. |- .-.+||+..||-|.......-+..||.||......
T Consensus 13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 3455 999999984 32 33589999999996554444567899999876543
No 156
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=69.63 E-value=16 Score=35.91 Aligned_cols=68 Identities=7% Similarity=0.046 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHh--hcCChhHHHHHHHHHHHHHcccCccchHHHHHhhh
Q 041480 786 KARVAALMCCCIEADAGCRNQMARNINVYSLLELL--HSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQ 855 (1122)
Q Consensus 786 k~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL--~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~ 855 (1122)
|..++.+|.++.-.+..++..|.+.|+|+.++..= ...+.-.|+.|+-+|.+|+.. |..+..++..+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~--n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG--NPENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC--CHHHHHHHHhcc
Confidence 34566777777666778899999999999999854 346788999999999999733 333444555444
No 157
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=69.54 E-value=6.4 Score=33.13 Aligned_cols=53 Identities=19% Similarity=0.081 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 041480 877 QRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLIL 932 (1122)
Q Consensus 877 ~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~L 932 (1122)
.+..|+.+|-+++.. .+....-+-..+++.|+.+|.+... .+|..|+.||.+|
T Consensus 3 vR~~A~~aLg~l~~~-~~~~~~~~~~~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAAAWALGRLAEG-CPELLQPYLPELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHCTTTT-THHHHHHHHHHHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhHhcc-cHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 356677777776553 3455555778899999999977543 6999999998764
No 158
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=68.36 E-value=87 Score=33.71 Aligned_cols=72 Identities=25% Similarity=0.367 Sum_probs=50.0
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHhhhccCC--CchhhHhh-HHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCC
Q 041480 1005 LETVSKILGSRNSDLVSVCLTTVAWLSHALSAQP--DAEFQLSA-FSAVISQLKEILQNGEQPQQKVLASMSLLNFSKI 1080 (1122)
Q Consensus 1005 L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~--~t~~~~~A-~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~ 1080 (1122)
+..|..++.++++.+...|+ -||...+...+ ...++... ...+++.++.+|. +...+-|..|=-++..|.+.
T Consensus 133 ~~~l~~~~~~Kn~~vR~~~~---~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~-D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 133 LEILSQGLKSKNPQVREECA---EWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLS-DADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHTT-S-HHHHHHHH---HHHHHHHTT-----GGG--HHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHH---HHHHHHHHHccchHhhhcccchHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHH
Confidence 56666778899999988886 58889999998 23344333 5678888888888 66688899888888888665
No 159
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.87 E-value=2 Score=37.46 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=34.2
Q ss_pred cccccchhccCCcccCCCcc-cchHHHHHHHHhCCCCCCCCCCcCC
Q 041480 649 ICPLTGQLFEEPVTLESGQT-FECEAIKEWIEQGNRTCPVTGKYLA 693 (1122)
Q Consensus 649 ~CPIc~elm~DPVtl~cGhT-ycRscIe~wl~~g~~tCP~trq~L~ 693 (1122)
-|.||.+---|-|+-.|||- .|-+|=.+.|..+..+||+||.++.
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 58899887778888899974 5667755545557889999998553
No 160
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.89 E-value=1.2e+02 Score=38.05 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=91.4
Q ss_pred hhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhh--hhhhhhccccccccccccCCCCCCCCCCCC
Q 041480 896 KYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVA--NESWILKPAGFNDRCEGNSLDNDENDLPVD 973 (1122)
Q Consensus 896 K~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~--~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d 973 (1122)
+...|.++.|++.+.++..... +++-.|+..|+|+|-- ..|+.+ .... | +.+-.++++ +|+.++
T Consensus 77 ~~~~Y~~~iv~Pv~~cf~D~d~--~vRyyACEsLYNiaKv--~k~~v~~~Fn~i------F-dvL~klsaD---sd~~V~ 142 (675)
T KOG0212|consen 77 KDAGYLEKIVPPVLNCFSDQDS--QVRYYACESLYNIAKV--AKGEVLVYFNEI------F-DVLCKLSAD---SDQNVR 142 (675)
T ss_pred ccHHHHHHhhHHHHHhccCccc--eeeeHhHHHHHHHHHH--hccCcccchHHH------H-HHHHHHhcC---Cccccc
Confidence 4445999999999999877654 6899999999999842 122211 1111 1 122222332 244444
Q ss_pred CCCCCchhHHhHHHHHHHhHHHHhcCCch-----hhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHH
Q 041480 974 DSTPLDDEEQASEEWLRKLSASLLGNRKR-----SFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFS 1048 (1122)
Q Consensus 974 ~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~-----~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~ 1048 (1122)
+ +.+.+-++-..+|-+... -|+.-|.+-|-.-++...+.- +.|+....+..+-.=+.+. .
T Consensus 143 ~----------~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~fl---v~Wl~~Lds~P~~~m~~yl--~ 207 (675)
T KOG0212|consen 143 G----------GAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFL---VSWLYVLDSVPDLEMISYL--P 207 (675)
T ss_pred c----------HHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHH---HHHHHHHhcCCcHHHHhcc--h
Confidence 4 233444544566644431 234444555555566665543 4798765554432211221 3
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHhhhhhC
Q 041480 1049 AVISQLKEILQNGEQPQQKVLASMSLLNFSK 1079 (1122)
Q Consensus 1049 ~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~ 1079 (1122)
-++++|.+||. +..-|-|.+.-.+|++|..
T Consensus 208 ~~ldGLf~~Ls-D~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 208 SLLDGLFNMLS-DSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred HHHHHHHHHhc-CCcHHHHHHHHHHHHHHHH
Confidence 47889999998 6667888899988888875
No 161
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=64.61 E-value=4.4 Score=44.78 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=42.7
Q ss_pred cccccccchhccCCccc-CCCcccchHHHHHHHHh-CCCCCCC--CCCcCCCCCCCcchHHH
Q 041480 647 DFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQ-GNRTCPV--TGKYLACPSLPLTNFIL 704 (1122)
Q Consensus 647 ef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~-g~~tCP~--trq~L~~~~ll~pN~~L 704 (1122)
+..|||+.+...-|++. .|.|.|+|..|..++.- -.+.||. |-|.+.... +.-.+.|
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~-~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDP-YVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccc-hhhhHHH
Confidence 56899999999999875 99999999999999873 3467885 555555554 2444444
No 162
>PLN02189 cellulose synthase
Probab=62.31 E-value=4.5 Score=53.01 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=35.5
Q ss_pred cccccchhc-----cCCccc--CCCcccchHHHHHHHHhCCCCCCCCCCcCC
Q 041480 649 ICPLTGQLF-----EEPVTL--ESGQTFECEAIKEWIEQGNRTCPVTGKYLA 693 (1122)
Q Consensus 649 ~CPIc~elm-----~DPVtl--~cGhTycRscIe~wl~~g~~tCP~trq~L~ 693 (1122)
+|.||++=. -+|.+. .||.-.||.|.+--.+.|++.||.|+....
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 799996643 356554 699999999996666679999999998765
No 163
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.89 E-value=2.1e+02 Score=36.60 Aligned_cols=221 Identities=16% Similarity=0.166 Sum_probs=114.9
Q ss_pred hHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCch
Q 041480 862 AMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSRE 941 (1122)
Q Consensus 862 aI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe 941 (1122)
+..-|+.|...+....+..|+-+|+.|.-.-.-.+ . ...-++.+|+.... .++..|...+..++..+.-.-+
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~-~-----~Y~~A~~~lsD~~e--~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK-A-----CYSRAVKHLSDDYE--DVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccH-H-----HHHHHHHHhcchHH--HHHHHHHHHHHHHHhcCCCccc
Confidence 44447777777777778888888887754211111 1 12235566655432 4777777777777766532222
Q ss_pred hhhhhhhhccccccccccccCCCCCCCCCCCCCC-----CCCchhHHhHHHHHHHhHH-------------HHhcCCc--
Q 041480 942 VANESWILKPAGFNDRCEGNSLDNDENDLPVDDS-----TPLDDEEQASEEWLRKLSA-------------SLLGNRK-- 1001 (1122)
Q Consensus 942 ~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~-----~~~~~ee~~~~~w~rk~a~-------------~Lv~~G~-- 1001 (1122)
...++.=++.+.|-+.++... +..| +..|.-. ..-.+||..-....+|+.. .|.+.|.
T Consensus 271 ~e~~e~kl~D~aF~~vC~~v~-D~sl-~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewS 348 (823)
T KOG2259|consen 271 RESEEEKLKDAAFSSVCRAVR-DRSL-SVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWS 348 (823)
T ss_pred chhhhhhhHHHHHHHHHHHHh-cCce-eeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcc
Confidence 222223345555555444311 1111 1111110 0011233323333345444 5665551
Q ss_pred --h----------------hh-----HHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhh
Q 041480 1002 --R----------------SF-----LETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEIL 1058 (1122)
Q Consensus 1002 --~----------------~~-----L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L 1058 (1122)
+ ++ -.|++.+|.+.=-++.+|..- -.++|+...++ --.-.+.=|+.|+
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~----Sl~~La~ssP~-----FA~~aldfLvDMf 419 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVA----SLCSLATSSPG-----FAVRALDFLVDMF 419 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHH----HHHHHHcCCCC-----cHHHHHHHHHHHh
Confidence 0 00 245555666666777777633 33555555443 2344567889999
Q ss_pred cCCCChhhHHHHHHHhhhhhCCc-----chhhhHHHH---hhHhHHHhhhhc
Q 041480 1059 QNGEQPQQKVLASMSLLNFSKIP-----ECGAVLKTI---AAEIRIPLQSLT 1102 (1122)
Q Consensus 1059 ~~~~~~eer~LA~~aL~~~~~~~-----~~~~~L~~~---a~gi~~~Lr~L~ 1102 (1122)
. +.-.+-|+.|-.+|..++.+- ..+++|..+ ..+|++.|+.|-
T Consensus 420 N-DE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL 470 (823)
T KOG2259|consen 420 N-DEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELL 470 (823)
T ss_pred c-cHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8 665668999988888877761 222333333 347777777654
No 164
>PLN02195 cellulose synthase A
Probab=60.37 E-value=5.6 Score=51.88 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=35.4
Q ss_pred cccccchh-----ccCCccc--CCCcccchHHHHHHHHhCCCCCCCCCCcCC
Q 041480 649 ICPLTGQL-----FEEPVTL--ESGQTFECEAIKEWIEQGNRTCPVTGKYLA 693 (1122)
Q Consensus 649 ~CPIc~el-----m~DPVtl--~cGhTycRscIe~wl~~g~~tCP~trq~L~ 693 (1122)
.|.||++- +-+|.+. .||.-.||.|.+---+.|++.||+|+.+..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 68899763 3467665 899999999995555569999999997765
No 165
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=60.02 E-value=8.7 Score=35.93 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=23.1
Q ss_pred ccccccchhc-----cCCccc--CCCcccchHHHHHHHHhCCCCCCCCCCcCC
Q 041480 648 FICPLTGQLF-----EEPVTL--ESGQTFECEAIKEWIEQGNRTCPVTGKYLA 693 (1122)
Q Consensus 648 f~CPIc~elm-----~DPVtl--~cGhTycRscIe~wl~~g~~tCP~trq~L~ 693 (1122)
-+|.||++=. -+|.++ .|+.-.||.|.+--.+.|++.||.|+.+..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 3688886544 256555 899999999998888889999999987654
No 166
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=59.37 E-value=5.5 Score=52.47 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=35.3
Q ss_pred cccccchhc-----cCCccc--CCCcccchHHHHHHHHhCCCCCCCCCCcCC
Q 041480 649 ICPLTGQLF-----EEPVTL--ESGQTFECEAIKEWIEQGNRTCPVTGKYLA 693 (1122)
Q Consensus 649 ~CPIc~elm-----~DPVtl--~cGhTycRscIe~wl~~g~~tCP~trq~L~ 693 (1122)
+|.||++=. -||.+. .||.-.||.|.+--.+.|++.||+|+....
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 799996643 356554 899999999996556679999999997654
No 167
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=58.77 E-value=27 Score=35.26 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=37.0
Q ss_pred HHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHH
Q 041480 793 MCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 793 L~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs 839 (1122)
|...+..-+..|..|.+.|+...+.+|+.+.+.+.|.+|+.++..|.
T Consensus 68 ig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 68 IGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 33344555677888888899999999999999999999999998775
No 168
>PLN02436 cellulose synthase A
Probab=58.43 E-value=5.7 Score=52.23 Aligned_cols=45 Identities=20% Similarity=0.329 Sum_probs=35.6
Q ss_pred cccccchhc-----cCCccc--CCCcccchHHHHHHHHhCCCCCCCCCCcCC
Q 041480 649 ICPLTGQLF-----EEPVTL--ESGQTFECEAIKEWIEQGNRTCPVTGKYLA 693 (1122)
Q Consensus 649 ~CPIc~elm-----~DPVtl--~cGhTycRscIe~wl~~g~~tCP~trq~L~ 693 (1122)
+|.||++=. -||.+. .||.-.||.|.+--.+.|++.||.|+.+..
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 899996543 356555 799999999996666679999999998765
No 169
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=58.24 E-value=1.7e+02 Score=37.83 Aligned_cols=249 Identities=14% Similarity=0.128 Sum_probs=140.3
Q ss_pred hHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHH-HHHHHhhcCCcchHHHHHHHHHhhccC
Q 041480 813 VYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMH-VLLLYLQRSPPEQRPLFSILLLHLDLL 891 (1122)
Q Consensus 813 I~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~-~Ll~lLqsgs~~~k~lAA~aLlnLsll 891 (1122)
+.-+++.|.+.+..+|..|+.++..|+..=..+ .++..+|-+. +|.++|-.--|+.-....+||..+...
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc---------~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nv 871 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTC---------GEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNV 871 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhc---------cHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence 345678888999999999999999987543222 1111122222 456677665666655555555544333
Q ss_pred CChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhcccccccccccc---C---CCC
Q 041480 892 VEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGN---S---LDN 965 (1122)
Q Consensus 892 ~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~---~---~~~ 965 (1122)
..-.|+.-=-.+.+|.|.-.|++.- +++|+++..-+-.+|-+-+ -..-+++|+----++.+.+..- + +..
T Consensus 872 igm~km~pPi~dllPrltPILknrh--eKVqen~IdLvg~Iadrgp--E~v~aREWMRIcfeLlelLkahkK~iRRaa~n 947 (1172)
T KOG0213|consen 872 IGMTKMTPPIKDLLPRLTPILKNRH--EKVQENCIDLVGTIADRGP--EYVSAREWMRICFELLELLKAHKKEIRRAAVN 947 (1172)
T ss_pred ccccccCCChhhhcccchHhhhhhH--HHHHHHHHHHHHHHHhcCc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2212222122457888999998865 3799999887777775422 2344678874444554444321 0 000
Q ss_pred CCCCCC-CCCC---C-----CCchhHHhHHHHHHHhHHHHhcCCch--hhHHHHHHhhccCCchhHHHHHHHHHHHHhhh
Q 041480 966 DENDLP-VDDS---T-----PLDDEEQASEEWLRKLSASLLGNRKR--SFLETVSKILGSRNSDLVSVCLTTVAWLSHAL 1034 (1122)
Q Consensus 966 ~~~d~~-~d~~---~-----~~~~ee~~~~~w~rk~a~~Lv~~G~~--~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L 1034 (1122)
.-.-+. ..+. + ...-+|. -.--|.-+|-++|.+-.+ .+|.+|-+--+-....+....|=+.+. |.
T Consensus 948 TfG~IakaIGPqdVLatLlnnLkvqeR-q~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf---~F 1023 (1172)
T KOG0213|consen 948 TFGYIAKAIGPQDVLATLLNNLKVQER-QNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSF---MF 1023 (1172)
T ss_pred hhhHHHHhcCHHHHHHHHHhcchHHHH-HhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHH---HH
Confidence 000000 0000 0 0000110 111112267777766555 567888776777777777777765553 33
Q ss_pred ccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCCc
Q 041480 1035 SAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIP 1081 (1122)
Q Consensus 1035 ~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~ 1081 (1122)
+-..+.+..+. -+.+|-|..-|- ++++.||-+|+-++.+++-++
T Consensus 1024 eyigemskdYi--yav~PlleDAlm-DrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1024 EYIGEMSKDYI--YAVTPLLEDALM-DRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred HHHHHHhhhHH--HHhhHHHHHhhc-cccHHHHHHHHHHHHHHhcCC
Confidence 33333322221 134566666666 889999999999999999883
No 170
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.11 E-value=6.3 Score=46.00 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=36.6
Q ss_pred CcccccccchhccCCcccCCCcc-cchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 646 QDFICPLTGQLFEEPVTLESGQT-FECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 646 eef~CPIc~elm~DPVtl~cGhT-ycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
.---|=||+.=-+|-|++||-|. .|..|-.. +.=....||+|||++..
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~-Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKS-LRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHH-HHHhhcCCCccccchHh
Confidence 35689999999999999999986 46777443 33235679999997754
No 171
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.86 E-value=33 Score=45.33 Aligned_cols=191 Identities=17% Similarity=0.206 Sum_probs=107.8
Q ss_pred chHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccC
Q 041480 812 NVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLL 891 (1122)
Q Consensus 812 aI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll 891 (1122)
-+|-++++|-| ..-|..|+.+|...+-+..+. ..+- =++|..+-.+.+||+...+.++.-+-+=..+-.+
T Consensus 473 QLPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWA--V~La------LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv 542 (1387)
T KOG1517|consen 473 QLPIVLQVLLS--QVHRLRALVLLARFLDLGPWA--VDLA------LSVGIFPYVLKLLQSSARELRPILVFIWAKILAV 542 (1387)
T ss_pred hcchHHHHHHH--HHHHHHHHHHHHHHhccchhh--hhhh------hccchHHHHHHHhccchHhhhhhHHHHHHHHHhc
Confidence 46667776654 334677777777766555543 2211 1468999999999999999988766442222112
Q ss_pred CChhhhhhhhhccHHHHHHHHhc-cCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCC
Q 041480 892 VEPRKYSIYREAAVDAITVALEE-SLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDL 970 (1122)
Q Consensus 892 ~EpnK~sIvReGAV~aLV~LL~~-g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~ 970 (1122)
+..-+.-++.++.-.-.+..|.. ...+.+.|.+||.+|..+..+|.-.-+. . -+++++..+...+-
T Consensus 543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~a----c--l~~~li~iCle~ln------- 609 (1387)
T KOG1517|consen 543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKA----C--LNGNLIGICLEHLN------- 609 (1387)
T ss_pred CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHH----h--ccccHHHHHHHHhc-------
Confidence 23345667777655555555655 3445578999999999999766432211 1 13333332221110
Q ss_pred CCCCCCCCchhHHhHHHHHH---------HhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccC
Q 041480 971 PVDDSTPLDDEEQASEEWLR---------KLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQ 1037 (1122)
Q Consensus 971 ~~d~~~~~~~ee~~~~~w~r---------k~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~ 1037 (1122)
|+ ++.--.-|+. .--.-..+..... .+.|...|++.++++..|.++.+. ..|...
T Consensus 610 --d~------~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A-hekL~~~LsD~vpEVRaAAVFALg---tfl~~~ 673 (1387)
T KOG1517|consen 610 --DD------PEPLLRQWLCICLGRLWEDYDEARWSGRRDNA-HEKLILLLSDPVPEVRAAAVFALG---TFLSNG 673 (1387)
T ss_pred --CC------ccHHHHHHHHHHHHHHhhhcchhhhccccccH-HHHHHHHhcCccHHHHHHHHHHHH---HHhccc
Confidence 10 0112233331 0001111111112 367778899999999999977544 666654
No 172
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=56.18 E-value=74 Score=36.20 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhc-CCcchHHHHHHHHHhhccCCChhhhhhhhhccH
Q 041480 827 PRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQR-SPPEQRPLFSILLLHLDLLVEPRKYSIYREAAV 905 (1122)
Q Consensus 827 aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqs-gs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV 905 (1122)
...+|+.+|.-++.+...... +. +-..+|..|+.+|+. .++..+..+.-+|..+-+...+|...+-+.+.+
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~--lF------~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl 178 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRK--LF------HREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGL 178 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHH--HH------hhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCH
Confidence 466788889888877664411 12 124688999999943 345555555556665555445677777788999
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhhcC
Q 041480 906 DAITVALEESLTDEKIQEKCCRALLILGGR 935 (1122)
Q Consensus 906 ~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~ 935 (1122)
.+++.+++....+...+-++..-|+..-+.
T Consensus 179 ~~v~~llk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 179 STVCSLLKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HHHHHHHccccccHHHhHHHHHHHHHHHcc
Confidence 999999999888767888888888887753
No 173
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=54.91 E-value=7 Score=34.29 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=33.5
Q ss_pred cccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCC
Q 041480 647 DFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPS 696 (1122)
Q Consensus 647 ef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ 696 (1122)
+..|=.|...=...++++|||..|+.|-..+ .-.-||.|+.++....
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence 3345555555567889999999999983332 3456999999887643
No 174
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.85 E-value=3.3e+02 Score=35.70 Aligned_cols=142 Identities=14% Similarity=0.156 Sum_probs=84.6
Q ss_pred HHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhc-chhhHHHH-HhccchHHHHHHhhcCChhHHHHHHHHHHHHHccc
Q 041480 765 LISIGGLQFLICRFESGKLEEKARVAALMCCCIEA-DAGCRNQM-ARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLS 842 (1122)
Q Consensus 765 IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~-D~snR~~I-ae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~ 842 (1122)
|-..+.|..|+..++.-+.-.|..++.+|..+... ..+-+..| .-.-+|..++.+|+......|-.|+.+|.+|+..+
T Consensus 118 ik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 118 IKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDN 197 (970)
T ss_pred HcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccC
Confidence 33458889999988877777777666666554332 22345555 44579999999999888889999999999998554
Q ss_pred CccchHHHHHhhhhhhhhhhHHHHHHHhhc-CCcch---HHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhc
Q 041480 843 RRRDVSTLLRNVQNEELVNAMHVLLLYLQR-SPPEQ---RPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEE 914 (1122)
Q Consensus 843 ~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqs-gs~~~---k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~ 914 (1122)
.. + .+.++= -++...|+.+++. |..+. -.++..+|.||-..+-.|+.-+-+.+-||-|..+|.-
T Consensus 198 ~~--I---QKlVAF---ENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 198 SS--I---QKLVAF---ENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred ch--H---HHHHHH---HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCc
Confidence 32 1 111111 1344445444442 11111 2334444555544444455433334567777776644
No 175
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=51.65 E-value=37 Score=28.51 Aligned_cols=53 Identities=15% Similarity=0.001 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHH
Q 041480 785 EKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDL 838 (1122)
Q Consensus 785 ek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eL 838 (1122)
.|..++..|..++...+..-. -.....++.|+.+|...+..+|.+|+.+|.+|
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~-~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQ-PYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHH-HHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhHhcccHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 455566666655432211111 12234688899999888889999999988754
No 176
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.47 E-value=10 Score=44.48 Aligned_cols=50 Identities=20% Similarity=0.435 Sum_probs=42.3
Q ss_pred CCcccccccchhcc---CCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 645 PQDFICPLTGQLFE---EPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 645 peef~CPIc~elm~---DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
...+.|.|++++|. -|++.|.|++|-..+|+.|-...+-.||.++..+..
T Consensus 328 ~S~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~ 380 (389)
T KOG0396|consen 328 QSRLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRY 380 (389)
T ss_pred hhHHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccH
Confidence 34578999999995 589999999999999999977656899999886654
No 177
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=50.62 E-value=86 Score=30.36 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=40.6
Q ss_pred hHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCCcchhhhHHHHhhHhHHHhhhhc
Q 041480 1046 AFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIPECGAVLKTIAAEIRIPLQSLT 1102 (1122)
Q Consensus 1046 A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~~~~~~L~~~a~gi~~~Lr~L~ 1102 (1122)
-..-++|+++.++. +.+..-|-.||-+|+|+++.-.. ..|. +-.+|.+.|-+|.
T Consensus 24 ~l~~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~~~-~~l~-~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 24 YLDEILPPVLKCFD-DQDSRVRYYACEALYNISKVARG-EILP-YFNEIFDALCKLS 77 (97)
T ss_pred HHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHH
Confidence 56778999999999 88888999999999999987433 3333 4455666665554
No 178
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.39 E-value=16 Score=43.50 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=42.1
Q ss_pred CCCcccccccchhccC---CcccCCCcccchHHHHHHHHh----CC---CCCCCCCCcCCCCCCCcchHHHHHHHHH
Q 041480 644 IPQDFICPLTGQLFEE---PVTLESGQTFECEAIKEWIEQ----GN---RTCPVTGKYLACPSLPLTNFILKRVIDG 710 (1122)
Q Consensus 644 ipeef~CPIc~elm~D---PVtl~cGhTycRscIe~wl~~----g~---~tCP~trq~L~~~~ll~pN~~Lk~lIe~ 710 (1122)
.-.-|.|-||.+-..= =+.+||+|.|||+|...|+.. |. -.||.++-+- . ..|+ .|+.+|..
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~---~-a~~g-~vKelvg~ 252 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGS---V-APPG-QVKELVGD 252 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcc---c-CCch-HHHHHHHH
Confidence 3557899999877743 356799999999999999873 32 2477665422 2 1333 67777663
No 179
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.16 E-value=78 Score=37.03 Aligned_cols=107 Identities=20% Similarity=0.186 Sum_probs=71.1
Q ss_pred hHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCC
Q 041480 813 VYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLV 892 (1122)
Q Consensus 813 I~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~ 892 (1122)
+..++.+|++-+...|..|+.-|..|+.. . ...+. .+..-.|..|..++....+ ...||.+|.||+...
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~---~-~~~~~-----~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~ 73 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR---G-LQSLS-----KYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE 73 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc---c-hhhhc-----cchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH
Confidence 35688999999999999999999888643 1 11111 1345567777777775555 456788899998853
Q ss_pred ChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhc
Q 041480 893 EPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGG 934 (1122)
Q Consensus 893 EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag 934 (1122)
+ -+..+... -+..|+..+.+-..+ .+.. .+..|.||+.
T Consensus 74 ~-l~~~ll~~-~~k~l~~~~~~p~~~-lad~-~cmlL~NLs~ 111 (353)
T KOG2973|consen 74 E-LRKKLLQD-LLKVLMDMLTDPQSP-LADL-ICMLLSNLSR 111 (353)
T ss_pred H-HHHHHHHH-HHHHHHHHhcCcccc-hHHH-HHHHHHHhcc
Confidence 3 44445555 566677777666553 3444 5568888885
No 180
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=48.41 E-value=1.1e+02 Score=34.82 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=62.6
Q ss_pred hhhHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcC--ChhHHHHHHHHHHH
Q 041480 761 NAKHLISIGGLQFLICRFE-SGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSK--QVKPRTNTVLLLID 837 (1122)
Q Consensus 761 Nr~~IasaGaIp~LV~LL~-sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SG--s~~aRenAv~aL~e 837 (1122)
.+..+.+..++..|+.+|+ ......+..++..|.++...+..|-..--+.+++..++.+|++. +.+.|..++.+|+-
T Consensus 125 Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~f 204 (257)
T PF08045_consen 125 SRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYF 204 (257)
T ss_pred HHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHH
Confidence 4556667788999999995 45677788888777777666666666556678999999999864 46789999999988
Q ss_pred HHcc
Q 041480 838 LICL 841 (1122)
Q Consensus 838 Ls~~ 841 (1122)
....
T Consensus 205 yl~~ 208 (257)
T PF08045_consen 205 YLMP 208 (257)
T ss_pred HHcc
Confidence 7643
No 181
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=47.44 E-value=62 Score=33.72 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=48.1
Q ss_pred HHHhhccHHHHHHhhcC---------CCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHH
Q 041480 764 HLISIGGLQFLICRFES---------GKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLL 834 (1122)
Q Consensus 764 ~IasaGaIp~LV~LL~s---------gs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~a 834 (1122)
.++..||+..|+.+|.. .+.+....++.-|..++.........+...+.+..|+..|.+.+...|..|+.+
T Consensus 102 ~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~lei 181 (187)
T PF06371_consen 102 EFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEI 181 (187)
T ss_dssp HH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 45667999999988841 122333333333333333233334455567889999999999999999999988
Q ss_pred HHHHH
Q 041480 835 LIDLI 839 (1122)
Q Consensus 835 L~eLs 839 (1122)
|..|+
T Consensus 182 L~~lc 186 (187)
T PF06371_consen 182 LAALC 186 (187)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 182
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=47.15 E-value=80 Score=31.93 Aligned_cols=72 Identities=11% Similarity=0.086 Sum_probs=57.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchh-hHHHHHhccchHHHHHHhhc---CChhHHHHHHHHHHHHHc
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAG-CRNQMARNINVYSLLELLHS---KQVKPRTNTVLLLIDLIC 840 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~s-nR~~Iae~GaI~pLV~LL~S---Gs~~aRenAv~aL~eLs~ 840 (1122)
.++..|-+.|.++++.++..|+.+|-.|+...+. ....|+....+..|+.++.. .+...|..++.+|.+...
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999888876544 56677777777788888865 356799999999988763
No 183
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=46.98 E-value=11 Score=49.61 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=35.6
Q ss_pred ccccccchhc-----cCCccc--CCCcccchHHHHHHHHhCCCCCCCCCCcCC
Q 041480 648 FICPLTGQLF-----EEPVTL--ESGQTFECEAIKEWIEQGNRTCPVTGKYLA 693 (1122)
Q Consensus 648 f~CPIc~elm-----~DPVtl--~cGhTycRscIe~wl~~g~~tCP~trq~L~ 693 (1122)
-+|.||++=. -||.+. .||.-.||.|.+--.+.|++.||.|+.+..
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4688986543 356554 899999999996556679999999997655
No 184
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=46.85 E-value=14 Score=42.25 Aligned_cols=43 Identities=30% Similarity=0.686 Sum_probs=34.3
Q ss_pred cccccccchhc----cCCcccCCCcccchHHHHHHHHhCCCCCCCCCC
Q 041480 647 DFICPLTGQLF----EEPVTLESGQTFECEAIKEWIEQGNRTCPVTGK 690 (1122)
Q Consensus 647 ef~CPIc~elm----~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq 690 (1122)
++.||||.+.+ .+|..++|||+--..|.+.....+ .+||+|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 44599997776 578889999988767777766666 99999977
No 185
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=46.68 E-value=9.6 Score=44.89 Aligned_cols=45 Identities=27% Similarity=0.575 Sum_probs=37.1
Q ss_pred Ccccccccchhcc----CCcccCCCcccchHHHHHHHHh-CCCCCCCCCC
Q 041480 646 QDFICPLTGQLFE----EPVTLESGQTFECEAIKEWIEQ-GNRTCPVTGK 690 (1122)
Q Consensus 646 eef~CPIc~elm~----DPVtl~cGhTycRscIe~wl~~-g~~tCP~trq 690 (1122)
-++.|-.|++.+- .-.-+||.|.|--.|+..++.+ +.++||.|+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4678999999882 2245799999999999999876 6789999985
No 186
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.56 E-value=77 Score=39.59 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=79.0
Q ss_pred HhHHHHhcCCch----hhHHHHH-HhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChh
Q 041480 991 KLSASLLGNRKR----SFLETVS-KILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQ 1065 (1122)
Q Consensus 991 k~a~~Lv~~G~~----~~L~aL~-~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~e 1065 (1122)
|+...+++.|.. -+++.|+ +...+++...++.-|+-.|-....|+.-.. + =.+.++||++.+++ +.+..
T Consensus 26 k~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~---~--Y~~~iv~Pv~~cf~-D~d~~ 99 (675)
T KOG0212|consen 26 KLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDA---G--YLEKIVPPVLNCFS-DQDSQ 99 (675)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccH---H--HHHHhhHHHHHhcc-Cccce
Confidence 444577777763 2233222 233478887888888877655555543222 2 34578899999998 77788
Q ss_pred hHHHHHHHhhhhhCCcchhhhHHHHhhHhHHHhhhhc---cchh-hHHHHHHHH
Q 041480 1066 QKVLASMSLLNFSKIPECGAVLKTIAAEIRIPLQSLT---EVTW-TTQELCAII 1115 (1122)
Q Consensus 1066 er~LA~~aL~~~~~~~~~~~~L~~~a~gi~~~Lr~L~---~~tw-~A~el~~~~ 1115 (1122)
-|-+||-+|||..+. ++.....+-..|.+-|.+|+ +-++ .+.||+-++
T Consensus 100 vRyyACEsLYNiaKv--~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRL 151 (675)
T KOG0212|consen 100 VRYYACESLYNIAKV--AKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRL 151 (675)
T ss_pred eeeHhHHHHHHHHHH--hccCcccchHHHHHHHHHHhcCCccccccHHHHHHHH
Confidence 999999999999996 44455557777888888876 4445 677777665
No 187
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=45.95 E-value=1.2e+02 Score=33.09 Aligned_cols=77 Identities=12% Similarity=0.089 Sum_probs=51.5
Q ss_pred chHHHHHHhhcC------ChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHH
Q 041480 812 NVYSLLELLHSK------QVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILL 885 (1122)
Q Consensus 812 aI~pLV~LL~SG------s~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aL 885 (1122)
.+..|++++..| ....-.+.+.+|.+|+...+. ..++- ...-..+-|.-|+.+.++.+...+.-+|++|
T Consensus 53 ~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~g---R~~~l--~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~I 127 (192)
T PF04063_consen 53 YLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEG---RQFFL--DPQRYDGPLQKLLPFTEHKSVIRRGGVAGTI 127 (192)
T ss_pred HHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHH---HHHHh--CchhhhhHHHHHHHHhccCcHHHHHHHHHHH
Confidence 677888877652 244566778888898876553 23222 1111112477888888888888999999999
Q ss_pred HhhccCCC
Q 041480 886 LHLDLLVE 893 (1122)
Q Consensus 886 lnLsll~E 893 (1122)
.|.|-..+
T Consensus 128 rNccFd~~ 135 (192)
T PF04063_consen 128 RNCCFDTD 135 (192)
T ss_pred HHhhccHh
Confidence 99988544
No 188
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.78 E-value=3e+02 Score=33.92 Aligned_cols=143 Identities=18% Similarity=0.130 Sum_probs=83.9
Q ss_pred HHhccchHHHHHHhhcCChhHHHHHHHHHHHHHccc---Cc-cchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHH---
Q 041480 807 MARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLS---RR-RDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRP--- 879 (1122)
Q Consensus 807 Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~---~~-k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~--- 879 (1122)
.++..+++.|+.||.+.+...-...+.+|.+|.-.+ ++ .++..++.+++++ +.+..|+..+..-+..-+.
T Consensus 121 lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg---~vlaLLvqnveRLdEsvkeea~ 197 (536)
T KOG2734|consen 121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDG---QVLALLVQNVERLDESVKEEAD 197 (536)
T ss_pred HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhc---cHHHHHHHHHHHhhhcchhhhh
Confidence 345568899999999888888888899999987442 11 2455678888876 4455555444432222222
Q ss_pred ---HHHHHHHhhccCCChhhhhhhhhccHHHHHHH-Hh---c-cCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhcc
Q 041480 880 ---LFSILLLHLDLLVEPRKYSIYREAAVDAITVA-LE---E-SLTDEKIQEKCCRALLILGGRFSFSREVANESWILKP 951 (1122)
Q Consensus 880 ---lAA~aLlnLsll~EpnK~sIvReGAV~aLV~L-L~---~-g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~ 951 (1122)
.+.+.+-||.. .+..|..+.+=..|+.. |. . +.++ .-+..|..+|..|..+ +++ .+..+-+.
T Consensus 198 gv~~~L~vveNlv~----~r~~~~~~~~e~~ll~WLL~rl~~k~~f~-aNk~YasEiLaillq~---s~e--~~~~~~~l 267 (536)
T KOG2734|consen 198 GVHNTLAVVENLVE----VRPAICTEIVEQGLLSWLLKRLKGKAAFD-ANKQYASEILAILLQN---SDE--NRKLLGPL 267 (536)
T ss_pred hhHHHHHHHHHHHh----ccHHHHHHHHHhhHHHHHHHHHhcccCcc-hhHHHHHHHHHHHhcc---Cch--hhhhhcCc
Confidence 22223334422 34455555444444333 22 2 2344 4677888899988764 444 34445566
Q ss_pred ccccccccccC
Q 041480 952 AGFNDRCEGNS 962 (1122)
Q Consensus 952 AG~~~~~~~~~ 962 (1122)
-|+.-.++.+.
T Consensus 268 ~GiD~lL~~la 278 (536)
T KOG2734|consen 268 DGIDVLLRQLA 278 (536)
T ss_pred ccHHHHHhhcc
Confidence 77755555543
No 189
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=44.69 E-value=83 Score=32.62 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=59.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchh-hHHHHHhccchHHHHHHhhc-CChhHHHHHHHHHHHHHc
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAG-CRNQMARNINVYSLLELLHS-KQVKPRTNTVLLLIDLIC 840 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~s-nR~~Iae~GaI~pLV~LL~S-Gs~~aRenAv~aL~eLs~ 840 (1122)
.++..|.++|.++++..+..|+.+|-.|++..+. ....|+....+..|+.++.. .+...|..++.+|.+.+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 5677888888889999999999999988885543 56678888889999999976 678899999999988763
No 190
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=44.55 E-value=4.2e+02 Score=32.42 Aligned_cols=167 Identities=16% Similarity=0.071 Sum_probs=97.3
Q ss_pred hhhHHHhhccHHHHHHhh----------cCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcC-----Ch
Q 041480 761 NAKHLISIGGLQFLICRF----------ESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSK-----QV 825 (1122)
Q Consensus 761 Nr~~IasaGaIp~LV~LL----------~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SG-----s~ 825 (1122)
+...|....++..|++.- ...+.+....|+..|+|+.-.+...|...++.|..+.+++.|... +.
T Consensus 14 ~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~ 93 (446)
T PF10165_consen 14 GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPS 93 (446)
T ss_pred cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCCh
Confidence 344444445555555443 223456666788888888888888998889999999999999876 67
Q ss_pred hHHHHHHHHHHHHHcccCccchHHHHHhhhhh--hhhhhHHHHHHHhhcCCcch-------------HHHHHHHHHhhcc
Q 041480 826 KPRTNTVLLLIDLICLSRRRDVSTLLRNVQNE--ELVNAMHVLLLYLQRSPPEQ-------------RPLFSILLLHLDL 890 (1122)
Q Consensus 826 ~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~e--G~~gaI~~Ll~lLqsgs~~~-------------k~lAA~aLlnLsl 890 (1122)
.......++|+=++..... +...++++ |.-..+..|-..+....... --.+..+|+|+..
T Consensus 94 d~~Fl~~RLLFLlTa~~~~-----~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~ 168 (446)
T PF10165_consen 94 DVEFLDSRLLFLLTALRPD-----DRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITL 168 (446)
T ss_pred hHHHHHHHHHHHHhcCChh-----HHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhh
Confidence 7888999888877654331 12222322 22223333433444221111 2234556888866
Q ss_pred CCChhhhhhhhhccHHHHHHHHhcc---CC----ChHHHHHHHHHHHHhh
Q 041480 891 LVEPRKYSIYREAAVDAITVALEES---LT----DEKIQEKCCRALLILG 933 (1122)
Q Consensus 891 l~EpnK~sIvReGAV~aLV~LL~~g---~~----~~~~qe~Aa~AL~~La 933 (1122)
... ....--..+.++.|+.+|..- .. -......+..+|.+|.
T Consensus 169 ~~~-~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlp 217 (446)
T PF10165_consen 169 HYP-KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLP 217 (446)
T ss_pred ccC-cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCC
Confidence 322 111113456677777777543 11 1125666777777775
No 191
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=44.35 E-value=37 Score=25.66 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=23.6
Q ss_pred hHHHHHHhhcCChhHHHHHHHHHHHHH
Q 041480 813 VYSLLELLHSKQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 813 I~pLV~LL~SGs~~aRenAv~aL~eLs 839 (1122)
+|.++++|...+...|..|+.+|..++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999998875
No 192
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=43.54 E-value=17 Score=35.78 Aligned_cols=27 Identities=22% Similarity=0.655 Sum_probs=24.3
Q ss_pred CCCcccchHHHHHHHHhCCCCCCCCCCc
Q 041480 664 ESGQTFECEAIKEWIEQGNRTCPVTGKY 691 (1122)
Q Consensus 664 ~cGhTycRscIe~wl~~g~~tCP~trq~ 691 (1122)
.|.|.|---||.+|++. +..||++++.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 79999999999999996 7789999874
No 193
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=42.76 E-value=3.1e+02 Score=34.72 Aligned_cols=157 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHH
Q 041480 771 LQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTL 850 (1122)
Q Consensus 771 Ip~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~ 850 (1122)
+|.|+.-+....-..+..++.+|..++. ...-.....-...||.+.+.|..-..+.|..+..+|..+...-+|..+..+
T Consensus 256 lpsll~~l~~~kWrtK~aslellg~m~~-~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ 334 (569)
T KOG1242|consen 256 LPSLLGSLLEAKWRTKMASLELLGAMAD-CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKI 334 (569)
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHH-hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHH
Q ss_pred HHhhhhhhhhh-----------------------------hHHHHHHHhhcCCcchHHHHHHHHHhhccCC-Chhhhhhh
Q 041480 851 LRNVQNEELVN-----------------------------AMHVLLLYLQRSPPEQRPLFSILLLHLDLLV-EPRKYSIY 900 (1122)
Q Consensus 851 L~~I~~eG~~g-----------------------------aI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~-EpnK~sIv 900 (1122)
+-.+.+. ++ .++.|-.-+...+...+..+|.+.-|+|.+. +|...+-+
T Consensus 335 ip~Lld~--l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapf 412 (569)
T KOG1242|consen 335 IPTLLDA--LADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPF 412 (569)
T ss_pred HHHHHHH--hcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhh
Q ss_pred hhccHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 041480 901 REAAVDAITVALEESLTDEKIQEKCCRALLIL 932 (1122)
Q Consensus 901 ReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~L 932 (1122)
=..-+|.|=..+..-.+. +|..+++||..|
T Consensus 413 l~~Llp~lk~~~~d~~PE--vR~vaarAL~~l 442 (569)
T KOG1242|consen 413 LPSLLPGLKENLDDAVPE--VRAVAARALGAL 442 (569)
T ss_pred HHHHhhHHHHHhcCCChh--HHHHHHHHHHHH
No 194
>PLN02400 cellulose synthase
Probab=42.38 E-value=11 Score=49.79 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=34.7
Q ss_pred cccccchhc-----cCCccc--CCCcccchHHHHHHHHhCCCCCCCCCCcCC
Q 041480 649 ICPLTGQLF-----EEPVTL--ESGQTFECEAIKEWIEQGNRTCPVTGKYLA 693 (1122)
Q Consensus 649 ~CPIc~elm-----~DPVtl--~cGhTycRscIe~wl~~g~~tCP~trq~L~ 693 (1122)
+|.||++=. -||.+. .||.-.||.|.+--.+.|++.||+|+....
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 799996543 356554 899999999995555669999999997655
No 195
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=42.31 E-value=95 Score=32.04 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=57.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcch-hhHHHHHhccchHHHHHHhhc-CChhHHHHHHHHHHHHH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADA-GCRNQMARNINVYSLLELLHS-KQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~-snR~~Iae~GaI~pLV~LL~S-Gs~~aRenAv~aL~eLs 839 (1122)
.++..|.+.|.++++.++..|+.+|-.|+...+ .....|+....+..|+.++.. ....+|..++.+|.+.+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 567788899999999999999999988887533 356678888889999998864 45678999999998875
No 196
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=41.79 E-value=25 Score=40.73 Aligned_cols=64 Identities=11% Similarity=0.147 Sum_probs=48.3
Q ss_pred cCCCCCcccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHH
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWK 712 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~ 712 (1122)
.....+-|-||||.+.|.-|+.= .-||.-|-.|=. +....||.|+.++.+ +-++++.++|+...
T Consensus 42 ~~~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~----~~~~~CP~Cr~~~g~----~R~~amEkV~e~~~ 106 (299)
T KOG3002|consen 42 TLLDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT----KVSNKCPTCRLPIGN----IRCRAMEKVAEAVL 106 (299)
T ss_pred cccchhhccCchhhccCcccceecCCCcEehhhhhh----hhcccCCcccccccc----HHHHHHHHHHHhce
Confidence 34557778999999999999764 669999998843 345679999998873 35677777776543
No 197
>PF14353 CpXC: CpXC protein
Probab=40.78 E-value=13 Score=37.11 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=32.0
Q ss_pred cccccccchhccCCcccCCCcccchHHHHHHHHh--CCCCCCCCCCcCC
Q 041480 647 DFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQ--GNRTCPVTGKYLA 693 (1122)
Q Consensus 647 ef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~--g~~tCP~trq~L~ 693 (1122)
++.||-|+..|.-.|-..-.-.-+....++-+.. ...+||.|+....
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 4689999999987765444444555556666543 2458999998654
No 198
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=40.66 E-value=3e+02 Score=29.42 Aligned_cols=116 Identities=20% Similarity=0.172 Sum_probs=69.3
Q ss_pred HHHhhccHHHHHHhhcCCCH------HHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcC--ChhHHHHHHHHH
Q 041480 764 HLISIGGLQFLICRFESGKL------EEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSK--QVKPRTNTVLLL 835 (1122)
Q Consensus 764 ~IasaGaIp~LV~LL~sgs~------Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SG--s~~aRenAv~aL 835 (1122)
.++..||+..|+++++.|.. +.-..++..+..++..+--+.. +.....|..++..+... +......|+..|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 45677999999999987663 3444566666667754322332 22333455666666543 456677788888
Q ss_pred HHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhh
Q 041480 836 IDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHL 888 (1122)
Q Consensus 836 ~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnL 888 (1122)
.+++.... . .- ..|.++ =.++.|+.+|+.++++-|..|-+++--|
T Consensus 85 Es~Vl~S~-~-ly---~~V~~e---vt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 85 ESIVLNSP-K-LY---QLVEQE---VTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred HHHHhCCH-H-HH---HHHhcc---CCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88764322 2 11 111222 2567888999987766666665554444
No 199
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.49 E-value=13 Score=47.57 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=35.7
Q ss_pred CCcccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCC
Q 041480 645 PQDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGK 690 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq 690 (1122)
-..-.|..|.-.+.-|++- .|||+|-+.|.+ .+...||.|.-
T Consensus 838 ~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 838 FQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 3445899999999999876 999999999988 56778999955
No 200
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=40.17 E-value=1.1e+02 Score=31.60 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=56.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchh-hHHHHHhccchHHHHHHhhc------CChhHHHHHHHHHHHHH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAG-CRNQMARNINVYSLLELLHS------KQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~s-nR~~Iae~GaI~pLV~LL~S------Gs~~aRenAv~aL~eLs 839 (1122)
.++..|.+.|.++++..+..|+.+|-.|++..+. ....|+....+..|+.++.. .+..+|...+.+|..-.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4677788899999999999999999888875433 56678888888899999953 35678888888887765
No 201
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=39.45 E-value=1.4e+02 Score=40.08 Aligned_cols=110 Identities=19% Similarity=0.237 Sum_probs=71.2
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccch
Q 041480 769 GGLQFLICRFES-GKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDV 847 (1122)
Q Consensus 769 GaIp~LV~LL~s-gs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~ 847 (1122)
|-.+.++..|.. +....+.-++.++..+ .++.+|-+.|+..+.+..|+.+|+|. ...|+-++..|+.|+....
T Consensus 1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~-Tan~~Cv~~~a~~~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~~~---- 1844 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLA-TANKECVTDLATCNVLTTLLTLLHSQ-PSMRARVLDVLYALSSNGQ---- 1844 (2235)
T ss_pred cccHHHHHHHHHcCCchHHHHHHHHHHHH-hcccHHHHHHHhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHhcCcH----
Confidence 555666666654 3444444444444433 45788999999999999999999985 4468889999999874332
Q ss_pred HHHHHhhhhhhhhhhHH-HHHHHhhcCCcchHHHHHHHHHhhc
Q 041480 848 STLLRNVQNEELVNAMH-VLLLYLQRSPPEQRPLFSILLLHLD 889 (1122)
Q Consensus 848 ~~~L~~I~~eG~~gaI~-~Ll~lLqsgs~~~k~lAA~aLlnLs 889 (1122)
+..+-. ..|++. .|-.+|.+..+.+++.||-+|..|-
T Consensus 1845 --i~keA~---~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1845 --IGKEAL---EHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred --HHHHHH---hcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 122222 234444 3334456667788888888877763
No 202
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=38.49 E-value=13 Score=41.72 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=20.3
Q ss_pred cccccccchhcc---CCcccCCCcccchHH
Q 041480 647 DFICPLTGQLFE---EPVTLESGQTFECEA 673 (1122)
Q Consensus 647 ef~CPIc~elm~---DPVtl~cGhTycRsc 673 (1122)
.|.||+|++.|. .....+.||+|+.+-
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a~ 31 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCAK 31 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcccc
Confidence 489999999995 234457789998753
No 203
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=38.16 E-value=1.5e+02 Score=30.29 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=56.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcc-hhhHHHHHhccchHHHHHHhhcC-Chh---HHHHHHHHHHHHHc
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEAD-AGCRNQMARNINVYSLLELLHSK-QVK---PRTNTVLLLIDLIC 840 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D-~snR~~Iae~GaI~pLV~LL~SG-s~~---aRenAv~aL~eLs~ 840 (1122)
.++..|.+.|..+++..+..|+.+|-.|++.. ...+..|+....+..|+.++.+. ... +|..++.+|.....
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 56778889999999999999999998888754 34566777777888888888753 333 78999988888653
No 204
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=38.12 E-value=29 Score=35.66 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=40.5
Q ss_pred CcccccccchhccCCccc----CCCcccchHHHHHHHHh--CCCCCCCCCCcCCCC
Q 041480 646 QDFICPLTGQLFEEPVTL----ESGQTFECEAIKEWIEQ--GNRTCPVTGKYLACP 695 (1122)
Q Consensus 646 eef~CPIc~elm~DPVtl----~cGhTycRscIe~wl~~--g~~tCP~trq~L~~~ 695 (1122)
.-+.|-||++.-.|+--+ .||++.|-.|-..-|+- -.+.||+|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 667999999999988665 79999999997775553 467899999877653
No 205
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=38.03 E-value=36 Score=36.00 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=35.2
Q ss_pred CCcccccccchhccCCcccCCCc-----ccchHHHHHHHHh-CCCCCCCCCCcCCC
Q 041480 645 PQDFICPLTGQLFEEPVTLESGQ-----TFECEAIKEWIEQ-GNRTCPVTGKYLAC 694 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl~cGh-----TycRscIe~wl~~-g~~tCP~trq~L~~ 694 (1122)
..+-.|-||++=-. +..-||.. ..=++|+++|+.. +...||+|+++..-
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 44567899976643 44456654 3378999999986 56789999987653
No 206
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=36.97 E-value=3e+02 Score=36.36 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=51.7
Q ss_pred hHHHhhccHHHHHHhhcC-----CCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhh----cCC----hhHHH
Q 041480 763 KHLISIGGLQFLICRFES-----GKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLH----SKQ----VKPRT 829 (1122)
Q Consensus 763 ~~IasaGaIp~LV~LL~s-----gs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~----SGs----~~aRe 829 (1122)
..|...||+..|+.+|.. +.-+.-..++.+|..|.+. ..||..+.+.++++.|++.|. .+. ...-+
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 345667999999999863 2233334566777778775 589999999999999999885 333 34444
Q ss_pred HHHHHHHHHHc
Q 041480 830 NTVLLLIDLIC 840 (1122)
Q Consensus 830 nAv~aL~eLs~ 840 (1122)
.-+.++..|+.
T Consensus 190 ~LL~IiE~ll~ 200 (802)
T PF13764_consen 190 QLLEIIESLLS 200 (802)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 207
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=36.32 E-value=49 Score=39.85 Aligned_cols=70 Identities=16% Similarity=0.111 Sum_probs=51.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHH-HHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHH
Q 041480 770 GLQFLICRFESGKLEEKARVAA-LMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 770 aIp~LV~LL~sgs~Eek~~Aaa-lL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs 839 (1122)
.+..|+++|+..+.-.-.++|+ =+.-.++.-+.-|..|.+.|+.+.+.+||.+.+.++|.+|+.++..|.
T Consensus 367 llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 367 LLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 4567888888654222222222 133344566778889999999999999999999999999999988764
No 208
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=36.07 E-value=1e+02 Score=32.11 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHH-HhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhh
Q 041480 782 KLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLE-LLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELV 860 (1122)
Q Consensus 782 s~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~-LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~ 860 (1122)
..+.|..++-++..+. +..+....+ .+..++. ++..++......|+.+|..|.-. ...+.. ..+..+
T Consensus 18 ~~~~r~~a~v~l~k~l---~~~~~~~~~--~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~--~~dv~~--~l~~~e--- 85 (157)
T PF11701_consen 18 PEEVRSHALVILSKLL---DAAREEFKE--KISDFIESLLDEGEMDSLIIAFSALTALFPG--PPDVGS--ELFLSE--- 85 (157)
T ss_dssp SCCHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT--THHHHH--HHCCTT---
T ss_pred CHhHHHHHHHHHHHHH---HHhHHHHHH--HHHHHHHHHHccccchhHHHHHHHHHHHhCC--CHHHHH--HHHhhh---
Confidence 3445555555555553 122322211 2334444 44555666888999998887522 211211 011223
Q ss_pred hhHHHHHHHhh-cCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChH-HHHHHHHHHH
Q 041480 861 NAMHVLLLYLQ-RSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEK-IQEKCCRALL 930 (1122)
Q Consensus 861 gaI~~Ll~lLq-sgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~-~qe~Aa~AL~ 930 (1122)
|.+..|+...+ .+.......++.=|++.+...+.-|..|...| ++.|-.++..+..+ . .|..|+-+|.
T Consensus 86 g~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~-~~~L~~~~~~~~~~-~~ir~~A~v~L~ 155 (157)
T PF11701_consen 86 GFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY-VSWLKELYKNSKDD-SEIRVLAAVGLC 155 (157)
T ss_dssp THHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC-HHHHHHHTTTCC-H-H-CHHHHHHHHH
T ss_pred hHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHccccch-HHHHHHHHHHHh
Confidence 55666666666 33444444455556666665564555455554 88888888665532 3 3555544443
No 209
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.55 E-value=6.9 Score=44.58 Aligned_cols=42 Identities=19% Similarity=0.403 Sum_probs=31.1
Q ss_pred CcccccccchhccCCcccCCCccc-chHHHHHHHHhCCCCCCCCCCcC
Q 041480 646 QDFICPLTGQLFEEPVTLESGQTF-ECEAIKEWIEQGNRTCPVTGKYL 692 (1122)
Q Consensus 646 eef~CPIc~elm~DPVtl~cGhTy-cRscIe~wl~~g~~tCP~trq~L 692 (1122)
.+.+|-||.+.-.|=|.|+|||.. |-.| .+.-..||+|||.+
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~C-----Gkrm~eCPICRqyi 341 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKC-----GKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhh-----ccccccCchHHHHH
Confidence 388999999999999999999965 2222 11123799998743
No 210
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=35.31 E-value=13 Score=35.23 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=28.0
Q ss_pred cCCCCCcccccccchhccCCccc--CCCcccchHHHH
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTL--ESGQTFECEAIK 675 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl--~cGhTycRscIe 675 (1122)
...+.++-.|++|++-+-+++.. ||||.|-..|+.
T Consensus 72 ~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 72 SVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred eEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45667778899999999877543 999999888864
No 211
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.99 E-value=4.6e+02 Score=32.35 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=97.3
Q ss_pred HHhhccHHHHHH---hhcCCCHHHH---HHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhc--CChhHHHHHHHHHH
Q 041480 765 LISIGGLQFLIC---RFESGKLEEK---ARVAALMCCCIEADAGCRNQMARNINVYSLLELLHS--KQVKPRTNTVLLLI 836 (1122)
Q Consensus 765 IasaGaIp~LV~---LL~sgs~Eek---~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~S--Gs~~aRenAv~aL~ 836 (1122)
++..+.++.||. +|+....|+. ..+++++-+++..+.+--..+++.|-+.-|+.=+.. .-..-+.+|..+|.
T Consensus 172 Lvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLa 251 (536)
T KOG2734|consen 172 LVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILA 251 (536)
T ss_pred HHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHH
Confidence 445577888885 4554554443 356778888877666666666666555444442222 23567888988888
Q ss_pred HHHcccCccchHHHHHhhhhhhhhhhHHHHH----HHhhcC--CcchHHHHHHHHHhhccC--CChhhhhhhhhccHHHH
Q 041480 837 DLICLSRRRDVSTLLRNVQNEELVNAMHVLL----LYLQRS--PPEQRPLFSILLLHLDLL--VEPRKYSIYREAAVDAI 908 (1122)
Q Consensus 837 eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll----~lLqsg--s~~~k~lAA~aLlnLsll--~EpnK~sIvReGAV~aL 908 (1122)
-|....... ...+ |.+.++..|+ .|-.++ +++.+.....+.-.||.+ ...||..+..++.+.-.
T Consensus 252 illq~s~e~--~~~~------~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm 323 (536)
T KOG2734|consen 252 ILLQNSDEN--RKLL------GPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLM 323 (536)
T ss_pred HHhccCchh--hhhh------cCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHH
Confidence 776553311 1112 2334444444 454555 355677777776667663 34589999998888887
Q ss_pred HHHHhccCCChHHHHHHHHHHHHhh
Q 041480 909 TVALEESLTDEKIQEKCCRALLILG 933 (1122)
Q Consensus 909 V~LL~~g~~~~~~qe~Aa~AL~~La 933 (1122)
.-+|+.+.. .+.-|.++|--+-
T Consensus 324 ~Lmlr~Kk~---sr~SalkvLd~am 345 (536)
T KOG2734|consen 324 NLMLREKKV---SRGSALKVLDHAM 345 (536)
T ss_pred HHHHHHHHH---hhhhHHHHHHHHH
Confidence 777777543 5677777877664
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=33.44 E-value=9.5e+02 Score=33.29 Aligned_cols=128 Identities=18% Similarity=0.182 Sum_probs=81.8
Q ss_pred HHHHhhc-CChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCC--
Q 041480 816 LLELLHS-KQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLV-- 892 (1122)
Q Consensus 816 LV~LL~S-Gs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~-- 892 (1122)
+...+++ .....|.+|+.+|..|+..-... ..|. -.++-++.+++...+.-|+.|..+|..+-..+
T Consensus 427 lts~IR~lk~~~tK~~ALeLl~~lS~~i~de---~~LD--------RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~ 495 (1431)
T KOG1240|consen 427 LTSCIRALKTIQTKLAALELLQELSTYIDDE---VKLD--------RVLPYFVHLLMDSEADVRATALETLTELLALVRD 495 (1431)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHhhhcchH---HHHh--------hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccC
Confidence 3334443 46778999999999998542211 1122 23467777788777778888888877764433
Q ss_pred -ChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccc
Q 041480 893 -EPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRC 958 (1122)
Q Consensus 893 -EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~ 958 (1122)
.+.-..|+-+=..|-|-.++...+.. .++..=|..|..||-+ .-.-+.....+..+|+....
T Consensus 496 ~~~~daniF~eYlfP~L~~l~~d~~~~-~vRiayAsnla~LA~t---A~rFle~~q~~~~~g~~n~~ 558 (1431)
T KOG1240|consen 496 IPPSDANIFPEYLFPHLNHLLNDSSAQ-IVRIAYASNLAQLAKT---AYRFLELTQELRQAGMLNDP 558 (1431)
T ss_pred CCcccchhhHhhhhhhhHhhhccCccc-eehhhHHhhHHHHHHH---HHHHHHHHHHHHhcccccCc
Confidence 23445577777778788888775432 5787778888888842 11233445557778875543
No 213
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=33.08 E-value=27 Score=38.39 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=39.0
Q ss_pred ccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 648 FICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 648 f~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
-.|.+|..|.-.-+.. .||+.|-+.||+.++.+ ...||.|+.-.++
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 4899999999887766 88999999999999997 8899999764443
No 214
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=32.14 E-value=1.8e+02 Score=29.55 Aligned_cols=71 Identities=13% Similarity=0.207 Sum_probs=55.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcch-hhHHHHHhccchHHHHHHhhcC-Chh-HHHHHHHHHHHHH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADA-GCRNQMARNINVYSLLELLHSK-QVK-PRTNTVLLLIDLI 839 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~-snR~~Iae~GaI~pLV~LL~SG-s~~-aRenAv~aL~eLs 839 (1122)
.++..|-+.|.++++.++..|+.+|-.|+...+ .....|+....+..|+.++... +.. .|..++.+|.+..
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 567788899999999999999999988887533 3566778888888999888653 333 7888888888765
No 215
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.94 E-value=24 Score=42.86 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=48.8
Q ss_pred CCCCCccccccc-chhccCCccc--CCCcccchHHHHHHHHh-CCCCCCCCCCcCCCCCCCcchHHHHHHHHHHH
Q 041480 642 TSIPQDFICPLT-GQLFEEPVTL--ESGQTFECEAIKEWIEQ-GNRTCPVTGKYLACPSLPLTNFILKRVIDGWK 712 (1122)
Q Consensus 642 ~~ipeef~CPIc-~elm~DPVtl--~cGhTycRscIe~wl~~-g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~ 712 (1122)
..+++++.||+| ...|.|-+++ .|+.+||-.||...+.. +...|+.|.. +.. . +.++..++..+..-.
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~-~~~-~-~~~p~~~r~~~n~~~ 285 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNV-LAD-D-LLPPKTLRDTINRIL 285 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhcc-ccc-c-cCCchhhHHHHHHHH
Confidence 356899999999 9999999888 88999999999998764 2334444433 222 2 356767776666543
No 216
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=30.99 E-value=58 Score=24.61 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=24.5
Q ss_pred hHHHHHHhhcCCCChhhHHHHHHHhhhhhC
Q 041480 1050 VISQLKEILQNGEQPQQKVLASMSLLNFSK 1079 (1122)
Q Consensus 1050 ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~ 1079 (1122)
++|.|+++|+ +.+-+-|..|+.+|..+++
T Consensus 1 llp~l~~~l~-D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLN-DPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT--SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcC-CCCHHHHHHHHHHHHHHHh
Confidence 5889999999 7888999999999988875
No 217
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=29.90 E-value=37 Score=43.40 Aligned_cols=50 Identities=8% Similarity=-0.033 Sum_probs=38.7
Q ss_pred cCCCCCcccccccchhccCCc----ccC---CCcccchHHHHHHHHh-----CCCCCCCCCC
Q 041480 641 LTSIPQDFICPLTGQLFEEPV----TLE---SGQTFECEAIKEWIEQ-----GNRTCPVTGK 690 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPV----tl~---cGhTycRscIe~wl~~-----g~~tCP~trq 690 (1122)
....++.-.|++|.--+.+|| +.+ |++.+|-.||..|..+ ....||+|..
T Consensus 90 DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 90 DEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred CcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 456678889999999999876 334 9999999999999875 2335666644
No 218
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=29.41 E-value=2.2e+02 Score=37.19 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=62.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHH
Q 041480 773 FLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLR 852 (1122)
Q Consensus 773 ~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~ 852 (1122)
.+.+-|...+++.|-.|+..|..+- + .+.+. ..++++.++|+.++..+|.+|+.+|..|=..+..- .
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~--~---~el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l-----~- 162 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLR--V---KELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL-----Y- 162 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcC--h---HHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh-----h-
Confidence 3444555567777766766665431 1 11111 24678888888888888888888888876443321 0
Q ss_pred hhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhc
Q 041480 853 NVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLD 889 (1122)
Q Consensus 853 ~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLs 889 (1122)
. ..|.+..+..++...+|.-.+.|..+|..++
T Consensus 163 --~---~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 163 --H---ELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred --h---cccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 1 2356677777777777777777777777653
No 219
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=29.21 E-value=41 Score=39.91 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=24.6
Q ss_pred ccCCCcccch-----HHHHHHHHh------------CCCCCCCCCCcCCCC
Q 041480 662 TLESGQTFEC-----EAIKEWIEQ------------GNRTCPVTGKYLACP 695 (1122)
Q Consensus 662 tl~cGhTycR-----scIe~wl~~------------g~~tCP~trq~L~~~ 695 (1122)
.-+|+..||| .|+-+||.. |..+||.||+++.-.
T Consensus 303 ~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 303 EPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred CCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 3466666655 789999863 456899999987643
No 220
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=28.83 E-value=1.5e+02 Score=31.25 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=53.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccch-HHHHHHhhcCChhHHHHHHHHHHHHHcc
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINV-YSLLELLHSKQVKPRTNTVLLLIDLICL 841 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI-~pLV~LL~SGs~~aRenAv~aL~eLs~~ 841 (1122)
..++.|...|...++..|..|+..|..+...| .|.-.|.+ ..++.+|...+...|..|..+|.++..-
T Consensus 25 ~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 25 PYLPNLYKCLRDEDPLVRKTALLVLSHLILED-----MIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 35678888998889999999999888887643 33344555 7888888778889999999999998744
No 221
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=28.55 E-value=26 Score=30.23 Aligned_cols=19 Identities=32% Similarity=0.975 Sum_probs=15.6
Q ss_pred cCCccCCCCCcccccccch
Q 041480 637 KGSFLTSIPQDFICPLTGQ 655 (1122)
Q Consensus 637 ~~~~~~~ipeef~CPIc~e 655 (1122)
.|..+.++|+++.||+|+.
T Consensus 24 pGt~f~~Lp~~w~CP~C~a 42 (50)
T cd00730 24 PGTPFEDLPDDWVCPVCGA 42 (50)
T ss_pred CCCCHhHCCCCCCCCCCCC
Confidence 4556788999999999963
No 222
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=28.38 E-value=13 Score=41.21 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=35.5
Q ss_pred Ccccccccc-hhccCC--ccc---CCCcccchHHHHHHHHhCCCCCC--CCCCcC
Q 041480 646 QDFICPLTG-QLFEEP--VTL---ESGQTFECEAIKEWIEQGNRTCP--VTGKYL 692 (1122)
Q Consensus 646 eef~CPIc~-elm~DP--Vtl---~cGhTycRscIe~wl~~g~~tCP--~trq~L 692 (1122)
.+-.||||. +.+-.| +++ .|=|..|-+|+-+.|..|...|| -|+..|
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 456899994 444455 222 49999999999999999999999 665544
No 223
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.20 E-value=6.8e+02 Score=32.89 Aligned_cols=151 Identities=11% Similarity=0.159 Sum_probs=86.5
Q ss_pred hccHHHHHHhhcCCC----HHH--HHHHHHH-HHHhhhcchhhHHHHHhccchHHHHH-HhhcCChhHHHHHHHHHHHHH
Q 041480 768 IGGLQFLICRFESGK----LEE--KARVAAL-MCCCIEADAGCRNQMARNINVYSLLE-LLHSKQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 768 aGaIp~LV~LL~sgs----~Ee--k~~Aaal-L~~La~~D~snR~~Iae~GaI~pLV~-LL~SGs~~aRenAv~aL~eLs 839 (1122)
.+.+|.|+.+|...+ .+. -..|++. |-..++ -|++.|+. -+-|+|+ -+++.+..-|+.|+-++....
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~---~~~D~Iv~--~Vl~Fiee~i~~pdwr~reaavmAFGSIl 392 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ---CVGDDIVP--HVLPFIEENIQNPDWRNREAAVMAFGSIL 392 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH---Hhcccchh--hhHHHHHHhcCCcchhhhhHHHHHHHhhh
Confidence 377788998885311 111 1112221 222222 34455555 2233444 677889999999999998875
Q ss_pred cccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhcc-CCChhhhhhhhhccHHHHHHHHhccCCC
Q 041480 840 CLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDL-LVEPRKYSIYREAAVDAITVALEESLTD 918 (1122)
Q Consensus 840 ~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsl-l~EpnK~sIvReGAV~aLV~LL~~g~~~ 918 (1122)
.-++.. -+.-++ .++++.++.+......-.+--+|..|..++- +.+..-...+-..-+.+|+.-|... +
T Consensus 393 ~gp~~~----~Lt~iV----~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De--P 462 (859)
T KOG1241|consen 393 EGPEPD----KLTPIV----IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE--P 462 (859)
T ss_pred cCCchh----hhhHHH----hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC--c
Confidence 333321 122223 3678888887776666667777888887765 2232222233344444444444432 2
Q ss_pred hHHHHHHHHHHHHhhc
Q 041480 919 EKIQEKCCRALLILGG 934 (1122)
Q Consensus 919 ~~~qe~Aa~AL~~Lag 934 (1122)
++-.+++.|+.+|+-
T Consensus 463 -rva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 463 -RVASNVCWAFISLAE 477 (859)
T ss_pred -hHHHHHHHHHHHHHH
Confidence 688899999999983
No 224
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=27.81 E-value=1.3e+02 Score=29.70 Aligned_cols=52 Identities=8% Similarity=0.082 Sum_probs=43.0
Q ss_pred hhhhhHHHhhccHHHHHHh--hcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhc
Q 041480 759 ITNAKHLISIGGLQFLICR--FESGKLEEKARVAALMCCCIEADAGCRNQMARN 810 (1122)
Q Consensus 759 ~~Nr~~IasaGaIp~LV~L--L~sgs~Eek~~AaalL~~La~~D~snR~~Iae~ 810 (1122)
..|...|...|+||.++.. ++..++=.++.++-.|.++...+.+|+..|++-
T Consensus 18 ~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 18 KEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4577788999999999876 456788899999999998888888999888763
No 225
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.69 E-value=30 Score=44.84 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=29.9
Q ss_pred cCCCCCcccccccchhc-cCCccc-CCCcccchHHHHHHHH
Q 041480 641 LTSIPQDFICPLTGQLF-EEPVTL-ESGQTFECEAIKEWIE 679 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm-~DPVtl-~cGhTycRscIe~wl~ 679 (1122)
...+...=+|-+|...+ ..|..+ +|||.|-|.||++...
T Consensus 811 y~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 811 YRVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred eEEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 34455556899996644 678766 9999999999999755
No 226
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=26.97 E-value=3.3e+02 Score=31.11 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=63.0
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhh
Q 041480 776 CRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQ 855 (1122)
Q Consensus 776 ~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~ 855 (1122)
.-+.+.+...|+.++.-|..|...|. .++. ..++-++..+..++...|..|+.+|..|.................
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~----~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~ 108 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDK----ELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE 108 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCh----HHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence 44567788888888887776666553 1222 246678888877899999999999999987644221100000000
Q ss_pred hhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhh
Q 041480 856 NEELVNAMHVLLLYLQRSPPEQRPLFSILLLHL 888 (1122)
Q Consensus 856 ~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnL 888 (1122)
..+....+..|..++.+..++.+..|+-.+.-|
T Consensus 109 ~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 109 SVDSKSLLKILTKFLDSENPELQAIAVEGLCKL 141 (298)
T ss_pred cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 012234555666666655444444444444433
No 227
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=26.83 E-value=26 Score=29.81 Aligned_cols=18 Identities=33% Similarity=1.032 Sum_probs=11.0
Q ss_pred cCCccCCCCCcccccccc
Q 041480 637 KGSFLTSIPQDFICPLTG 654 (1122)
Q Consensus 637 ~~~~~~~ipeef~CPIc~ 654 (1122)
.|.-+.++|+++.||+|.
T Consensus 24 pGt~F~~Lp~~w~CP~C~ 41 (47)
T PF00301_consen 24 PGTPFEDLPDDWVCPVCG 41 (47)
T ss_dssp TT--GGGS-TT-B-TTTS
T ss_pred CCCCHHHCCCCCcCcCCC
Confidence 355688999999999996
No 228
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=26.78 E-value=1.2e+02 Score=31.61 Aligned_cols=70 Identities=24% Similarity=0.229 Sum_probs=44.7
Q ss_pred HHhhccHHHHHHhhc--CCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhc-CChh-HHHHHHHHHH
Q 041480 765 LISIGGLQFLICRFE--SGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHS-KQVK-PRTNTVLLLI 836 (1122)
Q Consensus 765 IasaGaIp~LV~LL~--sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~S-Gs~~-aRenAv~aL~ 836 (1122)
+...|..+.++.+.. ..+...+..++.+|.. +-.|..||..|...| ++-|-+++.. .+.. .|..|+..|.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~a-Ac~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSA-ACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHH-HTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHH-HHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHHh
Confidence 345688888888887 4555555555555543 334889999998875 4667777754 3444 5777766654
No 229
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=26.17 E-value=5.4e+02 Score=30.49 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=72.4
Q ss_pred HHHHHHHHhhccC---hhHHHHHHHhhhhhhcCCCCCCCCCcccCcCCchHHHhhhHHHHHHHHHhcCchHHHHHHHHHh
Q 041480 259 IETVQRAAEESAS---SKELKKASLQLSMITGMSANDLKDGSTSGVPNSKLSACAHLYLSVIYKIQKKDRVSAKHLLQVF 335 (1122)
Q Consensus 259 ie~ie~a~~~~~~---~~~l~~a~~~L~~~a~L~~~~~~~~~T~Gvpn~~Lsaca~lyLs~v~kl~~~~~~sa~h~Lq~f 335 (1122)
++++|-+.+...- .-+...=-+.-+++.+++.+=.....+.|+||-== ...|..|.|
T Consensus 16 ~~aleiLa~~~ev~g~~~r~~~y~~Aasvlk~~p~~I~S~~ea~~lP~iG~--------------------kia~ki~Ei 75 (353)
T KOG2534|consen 16 TEALEILAEAYEVEGEEDRARAYRRAASVLKSLPFPITSGEEAEKLPGIGP--------------------KIAEKIQEI 75 (353)
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHHhCCCCcccHHHhcCCCCCCH--------------------HHHHHHHHH
Confidence 4667766543322 23444444467888888876545555677876321 134566666
Q ss_pred hcChhh------hhhhhhH--HHHHhhccccchhhHHHHhhhhhhhccCCCchhHhHHHHHHHHHhhhHHHHHHH---HH
Q 041480 336 CDSPFM------ARTTLLP--ELWDYLISPHLAHLKAWYKQEADSLADESNKPRKMKLLEKVYNEILDSGTYQFA---VY 404 (1122)
Q Consensus 336 ~~~P~~------aR~~laP--~lw~~LF~phl~~l~~wy~~e~~~~~~~~~~~~k~k~Lek~Y~e~lD~~tr~fA---~Y 404 (1122)
+..=-+ .+.+.-+ .||.+.|--...+-+.||.+-...|.+. = ++-|.=|+|-. .|
T Consensus 76 letG~l~ele~v~~de~~~~lklFtnifGvG~ktA~~Wy~~GfrTled~-------------R-k~~~kft~qqk~Gl~y 141 (353)
T KOG2534|consen 76 LETGVLRELEAVRNDERSQSLKLFTNIFGVGLKTAEKWYREGFRTLEDV-------------R-KKPDKFTRQQKAGLKY 141 (353)
T ss_pred HHcCCchhHHHHhcchhHHHHHHHHHHhccCHHHHHHHHHhhhhHHHHH-------------H-hCHHHHHHHHHHhHHH
Confidence 655221 2223333 6899999999999999999777554443 3 33344444433 69
Q ss_pred HHHHHhc
Q 041480 405 YKDWLTE 411 (1122)
Q Consensus 405 YKdwL~~ 411 (1122)
|-||++-
T Consensus 142 y~Df~~~ 148 (353)
T KOG2534|consen 142 YEDFLKR 148 (353)
T ss_pred HHHHhhh
Confidence 9999985
No 230
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=26.16 E-value=2.8e+02 Score=31.71 Aligned_cols=105 Identities=19% Similarity=0.121 Sum_probs=71.8
Q ss_pred HHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhh-
Q 041480 818 ELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRK- 896 (1122)
Q Consensus 818 ~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK- 896 (1122)
..+++.+...|+.|+..|.-.+..+... + ...+..++..++.++..-+..|..+|+-+...+...-
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~-a------------~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKEL-A------------KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHH-H------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4567788899999999998777666532 1 2345666777777888888889988888766543211
Q ss_pred h-------hhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHh--hcCCC
Q 041480 897 Y-------SIYREAAVDAITVALEESLTDEKIQEKCCRALLIL--GGRFS 937 (1122)
Q Consensus 897 ~-------sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~L--ag~fS 937 (1122)
. .......++.+...|.+.. ...|..|+..|.-| +|++.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~--~~~~~~a~EGl~KLlL~~~i~ 148 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSEN--PELQAIAVEGLCKLLLSGRIS 148 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHhcCCCC
Confidence 1 1223455666788887763 36899999999886 45543
No 231
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=24.96 E-value=54 Score=32.81 Aligned_cols=53 Identities=19% Similarity=0.388 Sum_probs=31.2
Q ss_pred CCCCcccccccchhccCCcccCC--C----cccchHHHHHHHHhCCCCCCCCCCcCCCCC
Q 041480 643 SIPQDFICPLTGQLFEEPVTLES--G----QTFECEAIKEWIEQGNRTCPVTGKYLACPS 696 (1122)
Q Consensus 643 ~ipeef~CPIc~elm~DPVtl~c--G----hTycRscIe~wl~~g~~tCP~trq~L~~~~ 696 (1122)
=..+.+.||||+.+=+.-|-+.. | .-|++.++.+-...| ..=|++|.++...-
T Consensus 36 C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~-~~HPLSREpit~sM 94 (113)
T PF06416_consen 36 CPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG-APHPLSREPITPSM 94 (113)
T ss_dssp S-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTT
T ss_pred CCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC-CCCCCccCCCChhh
Confidence 34677899999999888886622 2 569999999988863 34588888776543
No 232
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=24.72 E-value=79 Score=33.97 Aligned_cols=52 Identities=27% Similarity=0.292 Sum_probs=29.7
Q ss_pred CCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHH
Q 041480 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWK 712 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~ 712 (1122)
+..|.||.|+.-+ ||+= ++ ..++.||.|+.+|...+--.--..|+..|+...
T Consensus 115 ~~~Y~Cp~C~~ry----------tf~e-A~-----~~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~ 166 (178)
T PRK06266 115 NMFFFCPNCHIRF----------TFDE-AM-----EYGFRCPQCGEMLEEYDNSELIKELKEQIKELE 166 (178)
T ss_pred CCEEECCCCCcEE----------eHHH-Hh-----hcCCcCCCCCCCCeecccHHHHHHHHHHHHHHH
Confidence 5788999886332 3321 22 247899999999876431011134555555443
No 233
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.56 E-value=1.4e+03 Score=30.03 Aligned_cols=70 Identities=11% Similarity=-0.046 Sum_probs=50.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccC
Q 041480 771 LQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSR 843 (1122)
Q Consensus 771 Ip~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~ 843 (1122)
..+|.+.++.+++..+..++....++ ...+.......|-++.|-+++...+..+-.||+.+|.++...+.
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl---~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKL---FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHh---hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 35677888877877776655544433 22344555667888888888887788899999999999987654
No 234
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=24.14 E-value=1.8e+03 Score=30.06 Aligned_cols=44 Identities=7% Similarity=-0.025 Sum_probs=25.4
Q ss_pred CChhhHHHHHHHhhhhhCCcchhhh----HHHHhhHhHHHhhhhccchh
Q 041480 1062 EQPQQKVLASMSLLNFSKIPECGAV----LKTIAAEIRIPLQSLTEVTW 1106 (1122)
Q Consensus 1062 ~~~eer~LA~~aL~~~~~~~~~~~~----L~~~a~gi~~~Lr~L~~~tw 1106 (1122)
..++-|..|-=|+|+|+..+..+-- |-+...|..+| ..++-+|+
T Consensus 1078 dgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh-ydiKmlt~ 1125 (1233)
T KOG1824|consen 1078 DGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH-YDIKMLTF 1125 (1233)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh-hHHHHHHH
Confidence 4566788888888888876544433 33344455555 44444444
No 235
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=23.99 E-value=4e+02 Score=28.48 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcc
Q 041480 782 KLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICL 841 (1122)
Q Consensus 782 s~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~ 841 (1122)
+......++++|-+.+..+..--..|.++-.++.|+..|+..+...+.+|+++|-.|..-
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 455566888888888775555566788888999999999999999999999999888644
No 236
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.97 E-value=4.3e+02 Score=34.70 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=44.6
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhcc
Q 041480 815 SLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDL 890 (1122)
Q Consensus 815 pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsl 890 (1122)
.+++.|...+...|..|+.+++.|+.... ....+.-|+.||.+.+++-+..-|.-+..++-
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn~~N---------------v~~mv~eLl~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVNESN---------------VRVMVKELLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhcccc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 56677777777788888888877752111 22456778999999988999998888887754
No 237
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=23.83 E-value=2.1e+02 Score=27.68 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=27.8
Q ss_pred chHHHHHHhhcCChhHHHHHHHHHHHHHcccC
Q 041480 812 NVYSLLELLHSKQVKPRTNTVLLLIDLICLSR 843 (1122)
Q Consensus 812 aI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~ 843 (1122)
-++|++..+...+...|..|..+|.+++...+
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~ 59 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVAR 59 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999985543
No 238
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=23.35 E-value=49 Score=34.12 Aligned_cols=44 Identities=16% Similarity=0.343 Sum_probs=33.6
Q ss_pred cccccccchhccC--Ccc-cCCC------cccchHHHHHHHHhCCCCCCCCCCc
Q 041480 647 DFICPLTGQLFEE--PVT-LESG------QTFECEAIKEWIEQGNRTCPVTGKY 691 (1122)
Q Consensus 647 ef~CPIc~elm~D--PVt-l~cG------hTycRscIe~wl~~g~~tCP~trq~ 691 (1122)
.+-|.||.+-..+ -|+ ++|| +-||..|+.+|- +.....|.-|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~-~~~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR-RERNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH-hhccCCCcccce
Confidence 5679999888876 665 4776 458999999994 456778887764
No 239
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=23.25 E-value=3.3e+02 Score=26.75 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=52.2
Q ss_pred hhHHHHHHhhc-cCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCCc
Q 041480 1003 SFLETVSKILG-SRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIP 1081 (1122)
Q Consensus 1003 ~~L~aL~~~l~-s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~ 1081 (1122)
.+|..+.+++. +..+++..+|++.++=|+.-...- .-...+++..+++..+.... ..-+.++|..+...-
T Consensus 6 ~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~------~~~l~~l~~~i~~~~~~~~~---~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 6 RLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS------DEVLNALMESILKNWTQETV---QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc------HHHHHHHHHHHHhccccchh---HHHHHHHHHHHHHcc
Confidence 36788999999 999999999999888555544333 33566777777776664332 233445555555332
Q ss_pred chhhhHHHHhhHhHHHhhh
Q 041480 1082 ECGAVLKTIAAEIRIPLQS 1100 (1122)
Q Consensus 1082 ~~~~~L~~~a~gi~~~Lr~ 1100 (1122)
.....+.+.+.++|-+
T Consensus 77 ---~~~~~lp~~~~~~l~~ 92 (121)
T PF12397_consen 77 ---ENVDSLPRKVFKALLK 92 (121)
T ss_pred ---cccccCCHHHHHHHHc
Confidence 1233344444444443
No 240
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=22.68 E-value=1.9e+02 Score=30.12 Aligned_cols=107 Identities=16% Similarity=0.098 Sum_probs=55.1
Q ss_pred chHHHHHHhhcCChhHHHHHHHHHHHHHc---ccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCc---------chHH
Q 041480 812 NVYSLLELLHSKQVKPRTNTVLLLIDLIC---LSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPP---------EQRP 879 (1122)
Q Consensus 812 aI~pLV~LL~SGs~~aRenAv~aL~eLs~---~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~---------~~k~ 879 (1122)
....+|..|..+.... ..|..|.. .....|+..|+. .||+..|+.+|..-.. ..+.
T Consensus 67 ~p~~~i~~L~~~~~~~-----~~L~~L~v~Lrt~~~~Wv~~Fl~-------~~G~~~L~~~L~~~~~~~~~~~~~~~~~~ 134 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS-----KILKSLRVSLRTNPISWVQEFLE-------LGGLEALLNVLSKLNKKKEKSEEDIDIEH 134 (187)
T ss_dssp HHHHHHHHHTTT--HH-----HHHHHHHHHHHHS-HHHHHHH-H-------HHHHHHHHHHHHHHHTHHCTCTTCHHHHH
T ss_pred hHHHHHHHHHccCccH-----HHHHHHHHHhccCCchHHHHhcc-------CCCHHHHHHHHHHhhhhhhhcchhHHHHH
Confidence 4556777776665432 23333322 222345656664 3666777766553211 1122
Q ss_pred HHHHHHHhhccCCChhhhhhh-hhccHHHHHHHHhccCCChHHHHHHHHHHHHhh
Q 041480 880 LFSILLLHLDLLVEPRKYSIY-REAAVDAITVALEESLTDEKIQEKCCRALLILG 933 (1122)
Q Consensus 880 lAA~aLlnLsll~EpnK~sIv-ReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~La 933 (1122)
.....|..|.. .......+. ..++|..|+.+|.+... +++..+...|..||
T Consensus 135 ~~l~Clkal~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~--~~r~~~leiL~~lc 186 (187)
T PF06371_consen 135 ECLRCLKALMN-TKYGLEAVLSHPDSVNLIALSLDSPNI--KTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHTS-SHHHHHHHHCSSSHHHHHHHT--TTSH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-cHHHHHHHHcCcHHHHHHHHHHCCCCH--HHHHHHHHHHHHHH
Confidence 22222333322 233334444 48899999999986544 68999988888876
No 241
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=22.48 E-value=95 Score=26.61 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=20.2
Q ss_pred CcccccccchhccCCcccCCCcccchHHHHHHHHh------CCCCCCCCCC
Q 041480 646 QDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQ------GNRTCPVTGK 690 (1122)
Q Consensus 646 eef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~------g~~tCP~trq 690 (1122)
+.|.||.|++- |....+..++.. ....||+|..
T Consensus 1 ~~f~CP~C~~~------------~~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKG------------FSESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCc------------cCHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 46889987652 344444444432 3467999975
No 242
>PHA02862 5L protein; Provisional
Probab=21.74 E-value=81 Score=33.05 Aligned_cols=46 Identities=15% Similarity=0.343 Sum_probs=32.4
Q ss_pred cccccchhccCCcccCCCc-----ccchHHHHHHHHh-CCCCCCCCCCcCCCC
Q 041480 649 ICPLTGQLFEEPVTLESGQ-----TFECEAIKEWIEQ-GNRTCPVTGKYLACP 695 (1122)
Q Consensus 649 ~CPIc~elm~DPVtl~cGh-----TycRscIe~wl~~-g~~tCP~trq~L~~~ 695 (1122)
.|=||++-=.+. .-||.. -.-++|+++|+.. +...||+|+.+..-+
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 577887765444 345543 2457899999985 677999999987543
No 243
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=21.70 E-value=58 Score=28.68 Aligned_cols=27 Identities=22% Similarity=0.660 Sum_probs=23.4
Q ss_pred cccccccchhc--cCCccc--CCCcccchHH
Q 041480 647 DFICPLTGQLF--EEPVTL--ESGQTFECEA 673 (1122)
Q Consensus 647 ef~CPIc~elm--~DPVtl--~cGhTycRsc 673 (1122)
.-.|++|++.| .|.+++ .||-.|=|.|
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDC 35 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHH
Confidence 34799999999 788776 8999999999
No 244
>PHA03096 p28-like protein; Provisional
Probab=21.61 E-value=63 Score=37.23 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=30.7
Q ss_pred ccccccchhcc-CC-------cccCCCcccchHHHHHHHHh--CCCCCCCCCC
Q 041480 648 FICPLTGQLFE-EP-------VTLESGQTFECEAIKEWIEQ--GNRTCPVTGK 690 (1122)
Q Consensus 648 f~CPIc~elm~-DP-------Vtl~cGhTycRscIe~wl~~--g~~tCP~trq 690 (1122)
-.|-||.+.-. -| .+-.|.|.||-.||..|... ...+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 56888866542 22 24489999999999999775 3456777765
No 245
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=21.58 E-value=9.5e+02 Score=25.18 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=42.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhcchhh-HHHHHhcc--chHHHHHHhhcC-ChhHHHHHHHHHHHHHcccC
Q 041480 774 LICRFESGKLEEKARVAALMCCCIEADAGC-RNQMARNI--NVYSLLELLHSK-QVKPRTNTVLLLIDLICLSR 843 (1122)
Q Consensus 774 LV~LL~sgs~Eek~~AaalL~~La~~D~sn-R~~Iae~G--aI~pLV~LL~SG-s~~aRenAv~aL~eLs~~~~ 843 (1122)
+..+|.+.+.+.+-..+.++..... .| ...+.+.+ =+..++.+|+.. ....++.|+.+|..|...-+
T Consensus 30 i~~LL~s~~~~~rw~G~~Ll~~~~~---~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 30 INSLLQSKSAYSRWAGLCLLKVTVE---QCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHhCCCChhhHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4466777777777766666654443 33 44444444 266788888764 45688888888888875433
No 246
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=21.56 E-value=1.3e+03 Score=26.74 Aligned_cols=97 Identities=10% Similarity=0.046 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhc----cc----
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARN----IN---- 812 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~----Ga---- 812 (1122)
.++..+..|+...+ . ..-.++...+.||..++..++|+...|.-|+-|+-.+.. |+.--.+|.+. -+
T Consensus 144 tsLGVIgaLvk~dd---~-eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIll-dD~GL~YiCqt~eRF~av~~~ 218 (293)
T KOG3036|consen 144 TSLGVIGALVKNDD---Q-EVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILL-DDVGLYYICQTAERFSAVALV 218 (293)
T ss_pred HHHHHHHHHHhcCc---H-HHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhh-ccccHHHHHHhHHHHHHHHHH
Confidence 34555666665443 2 355678888999999999999998888877777776654 55666666432 11
Q ss_pred hHHHHH-HhhcCChhHHHHHHHHHHHHHccc
Q 041480 813 VYSLLE-LLHSKQVKPRTNTVLLLIDLICLS 842 (1122)
Q Consensus 813 I~pLV~-LL~SGs~~aRenAv~aL~eLs~~~ 842 (1122)
+..+|. +...++...-.++++....|+-.+
T Consensus 219 L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 219 LGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 222333 444577888888999998886333
No 247
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.00 E-value=66 Score=25.13 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=7.9
Q ss_pred CCCCCCCCCCc
Q 041480 681 GNRTCPVTGKY 691 (1122)
Q Consensus 681 g~~tCP~trq~ 691 (1122)
....||+|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 45589999774
Done!