Query 041480
Match_columns 1122
No_of_seqs 325 out of 1457
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 12:37:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l6x_A Catenin delta-1; cateni 99.8 4.9E-17 1.7E-21 195.2 25.6 325 742-1104 68-456 (584)
2 2kr4_A Ubiquitin conjugation f 99.7 5.5E-19 1.9E-23 161.8 5.3 75 641-717 8-82 (85)
3 3nmw_A APC variant protein; AR 99.7 5.4E-17 1.8E-21 184.1 21.7 270 741-1083 51-338 (354)
4 1xm9_A Plakophilin 1; armadill 99.7 1.8E-16 6.1E-21 184.3 25.8 337 740-1116 20-445 (457)
5 2kre_A Ubiquitin conjugation f 99.7 1.5E-18 5.1E-23 163.9 6.2 75 641-717 23-97 (100)
6 1wgm_A Ubiquitin conjugation f 99.7 2.1E-18 7.3E-23 162.2 7.1 77 639-717 14-91 (98)
7 3now_A UNC-45 protein, SD10334 99.7 1.2E-16 4E-21 197.9 24.6 286 763-1120 489-785 (810)
8 2f42_A STIP1 homology and U-bo 99.7 3E-18 1E-22 177.4 5.6 77 640-717 99-175 (179)
9 3l6x_A Catenin delta-1; cateni 99.7 6.5E-16 2.2E-20 185.5 22.4 304 767-1101 46-403 (584)
10 3nmz_A APC variant protein; pr 99.7 6.3E-16 2.1E-20 181.1 20.4 268 741-1081 167-452 (458)
11 3ul1_B Importin subunit alpha- 99.7 1.2E-15 4.1E-20 179.4 21.3 323 740-1104 75-412 (510)
12 2c2l_A CHIP, carboxy terminus 99.7 4.7E-17 1.6E-21 176.1 5.9 76 641-717 202-277 (281)
13 1t1h_A Gspef-atpub14, armadill 99.6 7.7E-17 2.6E-21 143.8 5.4 75 642-717 3-77 (78)
14 3tt9_A Plakophilin-2; cell adh 99.6 2.2E-15 7.4E-20 162.1 17.4 167 759-935 42-230 (233)
15 1xm9_A Plakophilin 1; armadill 99.6 3.4E-15 1.2E-19 173.5 20.4 295 770-1102 3-380 (457)
16 3tpo_A Importin subunit alpha- 99.6 1.5E-14 5.1E-19 170.5 25.9 285 741-1103 139-430 (529)
17 3ul1_B Importin subunit alpha- 99.6 9.8E-14 3.4E-18 163.2 32.4 298 740-1079 119-430 (510)
18 2yu4_A E3 SUMO-protein ligase 99.6 2.7E-16 9.2E-21 146.4 4.8 75 643-718 3-86 (94)
19 3nmw_A APC variant protein; AR 99.6 1E-14 3.5E-19 165.5 18.2 249 784-1104 47-316 (354)
20 4b8j_A Importin subunit alpha- 99.6 3.5E-14 1.2E-18 165.7 22.4 320 741-1103 93-424 (528)
21 4hxt_A De novo protein OR329; 99.6 7.6E-14 2.6E-18 144.9 21.2 243 769-1082 2-244 (252)
22 3nmz_A APC variant protein; pr 99.6 2.7E-14 9.2E-19 167.3 19.1 320 745-1103 49-431 (458)
23 3now_A UNC-45 protein, SD10334 99.6 5E-14 1.7E-18 174.5 20.4 324 742-1103 350-718 (810)
24 4b8j_A Importin subunit alpha- 99.6 3.8E-13 1.3E-17 156.9 26.7 333 740-1115 136-494 (528)
25 1jdh_A Beta-catenin; beta-cate 99.5 1.4E-12 4.7E-17 150.6 28.1 319 741-1101 36-363 (529)
26 3tt9_A Plakophilin-2; cell adh 99.5 2.7E-14 9.2E-19 153.7 12.2 177 769-961 8-202 (233)
27 2jdq_A Importin alpha-1 subuni 99.5 3.1E-12 1.1E-16 144.3 29.0 302 741-1083 84-394 (450)
28 3tpo_A Importin subunit alpha- 99.5 1.1E-12 3.8E-17 154.6 26.2 284 741-1101 95-385 (529)
29 4db6_A Armadillo repeat protei 99.5 2.5E-13 8.6E-18 138.8 17.9 180 740-934 30-209 (210)
30 1wa5_B Importin alpha subunit; 99.5 4E-12 1.4E-16 148.8 30.2 324 741-1104 150-492 (530)
31 1wa5_B Importin alpha subunit; 99.5 9.4E-13 3.2E-17 154.1 24.8 321 741-1103 106-438 (530)
32 2z6h_A Catenin beta-1, beta-ca 99.5 2.5E-12 8.4E-17 154.9 28.8 300 741-1080 33-337 (644)
33 1jdh_A Beta-catenin; beta-cate 99.5 3.2E-13 1.1E-17 155.9 20.1 282 766-1087 14-304 (529)
34 1xqr_A HSPBP1 protein; armadil 99.5 3.9E-13 1.3E-17 149.1 18.1 166 760-935 72-239 (296)
35 4db8_A Armadillo-repeat protei 99.5 8.8E-13 3E-17 138.3 18.9 201 740-961 30-230 (252)
36 3ztg_A E3 ubiquitin-protein li 99.5 5E-14 1.7E-18 129.4 7.9 75 641-716 7-84 (92)
37 4db8_A Armadillo-repeat protei 99.5 1.2E-12 4.2E-17 137.2 19.0 239 769-1080 12-252 (252)
38 2z6h_A Catenin beta-1, beta-ca 99.5 1.6E-12 5.4E-17 156.6 22.1 291 766-1100 11-312 (644)
39 2z6g_A B-catenin; FULL-length, 99.5 4.3E-12 1.5E-16 157.1 26.4 300 741-1080 169-473 (780)
40 2jdq_A Importin alpha-1 subuni 99.5 8.2E-12 2.8E-16 140.9 25.5 321 740-1103 38-371 (450)
41 2z6g_A B-catenin; FULL-length, 99.4 2E-12 7E-17 160.0 22.2 277 764-1081 146-430 (780)
42 3opb_A SWI5-dependent HO expre 99.4 1.9E-12 6.4E-17 158.8 19.8 257 760-1079 448-728 (778)
43 4hxt_A De novo protein OR329; 99.4 6.8E-12 2.3E-16 130.2 18.3 199 741-960 21-219 (252)
44 3m62_A Ubiquitin conjugation f 99.3 3.1E-13 1.1E-17 167.4 5.4 75 641-717 885-960 (968)
45 3fl2_A E3 ubiquitin-protein li 99.3 3.7E-13 1.3E-17 130.6 4.5 70 643-713 48-118 (124)
46 2bay_A PRE-mRNA splicing facto 99.3 2.1E-13 7.1E-18 117.8 2.1 54 647-702 3-57 (61)
47 4db6_A Armadillo repeat protei 99.3 1.5E-11 5.1E-16 125.7 15.4 177 768-960 11-187 (210)
48 3htk_C E3 SUMO-protein ligase 99.3 3.5E-13 1.2E-17 146.1 3.4 73 641-714 175-251 (267)
49 1z6u_A NP95-like ring finger p 99.3 1.3E-12 4.3E-17 131.7 4.6 71 642-713 73-144 (150)
50 2y43_A E3 ubiquitin-protein li 99.2 5.5E-12 1.9E-16 117.5 3.3 72 643-716 18-90 (99)
51 2egp_A Tripartite motif-contai 99.2 1.4E-12 4.7E-17 116.0 -2.5 66 641-707 6-77 (79)
52 2ckl_A Polycomb group ring fin 99.2 1.3E-11 4.4E-16 117.0 3.9 69 643-713 11-84 (108)
53 2ckl_B Ubiquitin ligase protei 99.2 1.1E-11 3.7E-16 125.9 3.7 72 642-713 49-121 (165)
54 3opb_A SWI5-dependent HO expre 99.2 1.2E-09 4.1E-14 134.2 22.2 259 761-1087 367-692 (778)
55 3lrq_A E3 ubiquitin-protein li 99.1 1.5E-11 5.2E-16 115.3 3.7 72 642-714 17-89 (100)
56 2ecw_A Tripartite motif-contai 99.1 6.5E-12 2.2E-16 112.5 1.1 66 641-707 13-83 (85)
57 2ecy_A TNF receptor-associated 99.1 5.5E-11 1.9E-15 102.8 6.1 56 641-696 9-64 (66)
58 1jm7_B BARD1, BRCA1-associated 99.1 9.9E-12 3.4E-16 119.5 1.5 69 643-715 18-87 (117)
59 2yur_A Retinoblastoma-binding 99.1 5.3E-11 1.8E-15 105.5 5.9 61 641-701 9-71 (74)
60 3hct_A TNF receptor-associated 99.1 2.5E-11 8.6E-16 116.9 4.0 71 641-712 12-82 (118)
61 2ecv_A Tripartite motif-contai 99.1 9.8E-12 3.4E-16 111.4 0.9 66 641-707 13-83 (85)
62 3l11_A E3 ubiquitin-protein li 99.1 1.4E-11 4.8E-16 117.8 1.5 71 642-713 10-87 (115)
63 2csy_A Zinc finger protein 183 99.1 5.6E-11 1.9E-15 106.8 4.1 66 641-709 9-74 (81)
64 1jm7_A BRCA1, breast cancer ty 99.1 4.1E-11 1.4E-15 113.4 3.4 69 644-713 18-88 (112)
65 4ayc_A E3 ubiquitin-protein li 99.1 4.2E-11 1.4E-15 118.5 3.5 65 644-712 50-114 (138)
66 1rmd_A RAG1; V(D)J recombinati 99.0 6.8E-11 2.3E-15 113.2 2.8 69 643-711 19-87 (116)
67 2djb_A Polycomb group ring fin 99.0 2.6E-10 8.7E-15 100.4 6.2 59 641-701 9-68 (72)
68 1xqr_A HSPBP1 protein; armadil 99.0 9.3E-09 3.2E-13 114.1 19.5 142 782-934 53-196 (296)
69 2ysl_A Tripartite motif-contai 99.0 3E-10 1E-14 99.5 4.9 56 641-696 14-71 (73)
70 3hcs_A TNF receptor-associated 99.0 3E-10 1E-14 115.7 4.6 71 641-712 12-82 (170)
71 2ysj_A Tripartite motif-contai 99.0 5.6E-10 1.9E-14 95.5 5.5 48 641-688 14-63 (63)
72 3knv_A TNF receptor-associated 98.9 1E-10 3.4E-15 116.8 0.5 68 642-710 26-102 (141)
73 1g25_A CDK-activating kinase a 98.9 5.2E-10 1.8E-14 96.3 4.6 55 646-701 2-61 (65)
74 2ecj_A Tripartite motif-contai 98.8 2.3E-09 7.8E-14 89.7 4.8 48 641-688 9-58 (58)
75 2ct2_A Tripartite motif protei 98.8 3.4E-09 1.2E-13 95.8 6.1 55 641-695 9-69 (88)
76 3ng2_A RNF4, snurf, ring finge 98.8 1.5E-09 5.1E-14 94.4 2.9 57 643-701 6-69 (71)
77 2ea6_A Ring finger protein 4; 98.7 4.9E-09 1.7E-13 90.4 4.3 53 641-694 9-68 (69)
78 2d8t_A Dactylidin, ring finger 98.7 3.5E-09 1.2E-13 92.8 3.3 51 643-694 11-61 (71)
79 1e4u_A Transcriptional repress 98.7 1.3E-08 4.6E-13 91.8 5.2 56 642-697 6-65 (78)
80 2xeu_A Ring finger protein 4; 98.7 5E-09 1.7E-13 89.0 1.9 50 646-696 2-58 (64)
81 2ect_A Ring finger protein 126 98.6 3.1E-08 1.1E-12 88.0 4.2 58 642-701 10-70 (78)
82 3grl_A General vesicular trans 98.5 7.6E-06 2.6E-10 98.9 24.2 305 740-1082 40-397 (651)
83 1chc_A Equine herpes virus-1 r 98.5 5.5E-08 1.9E-12 84.0 4.1 49 645-694 3-52 (68)
84 2ecm_A Ring finger and CHY zin 98.5 6.4E-08 2.2E-12 80.1 3.6 47 646-693 4-54 (55)
85 1bor_A Transcription factor PM 98.5 3.3E-08 1.1E-12 83.2 1.8 46 645-694 4-49 (56)
86 4ap4_A E3 ubiquitin ligase RNF 98.5 4.1E-08 1.4E-12 94.6 2.3 51 645-696 5-62 (133)
87 2ecn_A Ring finger protein 141 98.4 2.6E-08 9E-13 86.6 0.5 54 641-696 9-62 (70)
88 2ep4_A Ring finger protein 24; 98.4 1.8E-07 6.3E-12 82.1 5.6 54 641-695 9-65 (74)
89 1v87_A Deltex protein 2; ring- 98.4 1.7E-07 5.9E-12 89.0 4.9 50 645-694 23-94 (114)
90 2kiz_A E3 ubiquitin-protein li 98.4 2.7E-07 9.3E-12 80.0 5.3 52 643-695 10-64 (69)
91 1iym_A EL5; ring-H2 finger, ub 98.4 1.3E-07 4.4E-12 78.3 3.0 48 644-692 2-53 (55)
92 2l0b_A E3 ubiquitin-protein li 98.4 1.7E-07 5.7E-12 86.3 3.9 51 643-694 36-89 (91)
93 1x4j_A Ring finger protein 38; 98.4 2.2E-07 7.4E-12 82.1 4.0 50 644-694 20-72 (75)
94 2y1n_A E3 ubiquitin-protein li 98.3 2.1E-07 7.2E-12 106.6 4.2 51 645-695 330-380 (389)
95 4ic3_A E3 ubiquitin-protein li 98.3 1.4E-07 4.6E-12 83.9 1.1 45 645-694 22-67 (74)
96 1wim_A KIAA0161 protein; ring 98.2 4E-07 1.4E-11 84.1 1.6 67 645-713 3-83 (94)
97 2ecg_A Baculoviral IAP repeat- 98.2 6.6E-07 2.2E-11 79.5 2.7 46 645-695 23-69 (75)
98 4ap4_A E3 ubiquitin ligase RNF 98.1 6.1E-07 2.1E-11 86.4 1.0 55 645-701 70-131 (133)
99 2ecl_A Ring-box protein 2; RNF 97.9 3.4E-06 1.2E-10 76.1 3.0 48 646-694 14-76 (81)
100 3ltm_A Alpha-REP4; protein eng 97.9 0.00061 2.1E-08 69.6 19.7 123 768-933 18-140 (211)
101 3t6p_A Baculoviral IAP repeat- 97.8 2.6E-06 8.8E-11 96.6 0.4 46 644-694 292-338 (345)
102 2vje_B MDM4 protein; proto-onc 97.8 7.5E-06 2.6E-10 70.6 2.9 48 646-694 6-56 (63)
103 2vje_A E3 ubiquitin-protein li 97.8 8.6E-06 2.9E-10 70.4 3.0 49 645-694 6-57 (64)
104 2yho_A E3 ubiquitin-protein li 97.8 4.3E-06 1.5E-10 75.4 0.5 45 645-694 16-61 (79)
105 3dpl_R Ring-box protein 1; ubi 97.7 1.5E-05 5.3E-10 75.9 3.8 46 647-693 37-100 (106)
106 3ltj_A Alpharep-4; protein eng 97.7 0.0019 6.4E-08 65.4 19.5 122 769-933 14-135 (201)
107 1oyz_A Hypothetical protein YI 97.7 0.0029 9.8E-08 67.4 21.0 206 770-1062 55-265 (280)
108 4gmo_A Putative uncharacterize 97.7 0.00014 5E-09 88.9 11.8 160 769-936 34-216 (684)
109 3grl_A General vesicular trans 97.6 0.00061 2.1E-08 82.5 16.5 183 741-935 141-343 (651)
110 2ea5_A Cell growth regulator w 97.5 4E-05 1.4E-09 67.2 3.0 46 645-695 13-59 (68)
111 2d8s_A Cellular modulator of i 97.4 0.00017 5.7E-09 65.4 5.5 52 645-696 13-72 (80)
112 3ltm_A Alpha-REP4; protein eng 97.4 0.003 1E-07 64.4 15.6 124 769-935 81-204 (211)
113 3ltj_A Alpharep-4; protein eng 97.3 0.0051 1.7E-07 62.2 15.9 123 769-934 76-198 (201)
114 4a0k_B E3 ubiquitin-protein li 97.3 4.2E-05 1.4E-09 74.3 0.0 45 648-693 49-111 (117)
115 1oyz_A Hypothetical protein YI 97.2 0.03 1E-06 59.5 21.1 95 810-933 22-119 (280)
116 4fdd_A Transportin-1; heat rep 96.7 0.076 2.6E-06 65.7 21.6 292 769-1102 174-492 (852)
117 4fdd_A Transportin-1; heat rep 96.4 0.14 4.9E-06 63.3 21.7 284 769-1080 128-430 (852)
118 2vgl_B AP-2 complex subunit be 96.1 0.18 6.2E-06 60.2 20.1 141 770-935 50-190 (591)
119 2qk2_A LP04448P; mini spindles 96.0 0.12 4.1E-06 54.1 15.6 189 815-1082 19-208 (242)
120 2ct0_A Non-SMC element 1 homol 96.0 0.0076 2.6E-07 53.9 5.3 47 648-694 16-64 (74)
121 1b3u_A Protein (protein phosph 95.9 0.18 6E-06 58.4 17.6 149 769-936 164-312 (588)
122 1te4_A Conserved protein MTH18 95.7 0.0027 9.4E-08 60.7 1.6 119 769-931 12-130 (131)
123 4gmo_A Putative uncharacterize 95.7 0.038 1.3E-06 67.6 11.9 71 861-934 34-105 (684)
124 1b3u_A Protein (protein phosph 95.7 0.98 3.3E-05 52.2 22.9 151 769-935 242-393 (588)
125 1ibr_B P95, importin beta-1 su 95.5 1.1 3.8E-05 49.9 21.8 290 769-1080 128-438 (462)
126 2vgl_B AP-2 complex subunit be 95.2 2 6.8E-05 51.3 23.9 160 769-934 121-311 (591)
127 1w63_A Adapter-related protein 95.0 2.5 8.6E-05 50.8 24.3 291 770-1116 108-432 (618)
128 1vyx_A ORF K3, K3RING; zinc-bi 95.0 0.022 7.5E-07 48.8 4.6 48 646-693 5-58 (60)
129 2bpt_A Importin beta-1 subunit 94.4 2.1 7.1E-05 52.1 21.7 286 770-1080 370-669 (861)
130 2qk2_A LP04448P; mini spindles 94.1 0.64 2.2E-05 48.5 14.3 171 740-935 33-206 (242)
131 1ibr_B P95, importin beta-1 su 94.1 6.3 0.00021 43.8 23.1 277 769-1081 35-359 (462)
132 3vk6_A E3 ubiquitin-protein li 93.9 0.033 1.1E-06 52.5 3.4 46 649-694 3-49 (101)
133 2bpt_A Importin beta-1 subunit 93.7 6.2 0.00021 48.0 23.9 319 740-1101 387-731 (861)
134 3k1l_B Fancl; UBC, ring, RWD, 93.4 0.013 4.6E-07 66.1 -0.1 49 646-694 307-373 (381)
135 3b2a_A TON_1937, putative unch 93.1 1.7 5.8E-05 47.1 15.3 147 769-935 33-180 (265)
136 1te4_A Conserved protein MTH18 92.4 0.41 1.4E-05 45.5 8.6 87 770-886 43-129 (131)
137 2jun_A Midline-1; B-BOX, TRIM, 92.4 0.044 1.5E-06 50.7 1.8 34 646-679 2-38 (101)
138 1qgr_A Protein (importin beta 91.8 29 0.00098 42.2 27.4 290 769-1080 128-438 (876)
139 3i2d_A E3 SUMO-protein ligase 91.8 0.094 3.2E-06 59.8 3.9 65 644-709 246-314 (371)
140 1qgr_A Protein (importin beta 91.1 7.2 0.00025 47.4 19.9 268 769-1080 172-480 (876)
141 1u6g_C TIP120 protein, CAND1; 91.1 9.8 0.00034 49.0 22.0 293 769-1080 133-464 (1230)
142 1u6g_C TIP120 protein, CAND1; 91.0 4.7 0.00016 51.9 18.9 272 771-1080 8-285 (1230)
143 4fo9_A E3 SUMO-protein ligase 89.0 0.23 7.9E-06 56.5 3.9 67 642-709 210-280 (360)
144 1w63_A Adapter-related protein 88.7 21 0.00073 42.8 21.0 140 769-935 313-452 (618)
145 3dad_A FH1/FH2 domain-containi 86.9 8.4 0.00029 43.6 14.7 149 774-931 123-282 (339)
146 2qk1_A Protein STU2; STU2P, XM 84.6 11 0.00037 40.2 13.8 153 770-935 61-221 (249)
147 3nw0_A Non-structural maintena 83.1 0.67 2.3E-05 49.9 3.5 49 647-695 180-230 (238)
148 3dad_A FH1/FH2 domain-containi 81.4 14 0.00048 41.8 13.5 140 741-887 137-282 (339)
149 1weo_A Cellulose synthase, cat 78.4 2.1 7.2E-05 39.6 4.5 47 647-693 16-69 (93)
150 3b2a_A TON_1937, putative unch 76.0 38 0.0013 36.9 14.0 165 740-934 51-218 (265)
151 2db0_A 253AA long hypothetical 74.9 17 0.00057 38.4 10.6 139 769-933 107-245 (253)
152 2vgl_A Adaptor protein complex 74.7 88 0.003 37.6 18.8 248 769-1077 329-589 (621)
153 4ady_A RPN2, 26S proteasome re 73.1 34 0.0011 43.8 14.9 131 770-934 542-676 (963)
154 2qk1_A Protein STU2; STU2P, XM 73.1 15 0.00051 39.0 10.3 193 868-1083 23-224 (249)
155 2vgl_A Adaptor protein complex 72.2 1.6E+02 0.0054 35.4 20.1 99 774-890 116-216 (621)
156 2iw3_A Elongation factor 3A; a 66.4 1.3E+02 0.0046 38.6 18.3 224 812-1080 55-281 (986)
157 2iw3_A Elongation factor 3A; a 63.1 1.2E+02 0.0041 39.0 17.0 180 740-932 113-322 (986)
158 3eg5_B Protein diaphanous homo 53.4 1.2E+02 0.0041 34.6 13.5 120 768-887 108-242 (383)
159 4ady_A RPN2, 26S proteasome re 48.6 5.4E+02 0.019 33.0 23.9 84 992-1080 634-720 (963)
160 2f31_A Diaphanous protein homo 42.4 69 0.0023 33.8 8.7 121 768-888 42-177 (233)
161 4ffb_C Protein STU2; tubulin f 39.2 2.1E+02 0.0073 30.1 12.0 94 741-840 74-168 (278)
162 1z8u_A Alpha-hemoglobin stabil 37.4 36 0.0012 31.5 4.6 45 376-425 57-101 (102)
163 1x5b_A Signal transducing adap 37.0 78 0.0027 31.9 7.6 71 769-839 52-124 (163)
164 3ldz_A STAM-1, signal transduc 35.6 72 0.0025 31.2 7.0 71 769-839 42-113 (140)
165 1e8j_A Rubredoxin; iron-sulfur 34.5 15 0.0005 30.7 1.5 19 637-655 26-44 (52)
166 1juq_A ADP-ribosylation factor 33.7 86 0.0029 31.8 7.4 71 769-839 50-127 (171)
167 4rxn_A Rubredoxin; electron tr 32.9 14 0.00047 31.2 1.1 19 637-655 26-44 (54)
168 1mhq_A ADP-ribosylation factor 32.5 92 0.0032 30.9 7.2 71 769-839 38-115 (148)
169 4ffb_C Protein STU2; tubulin f 32.4 3.3E+02 0.011 28.6 12.1 145 772-934 58-212 (278)
170 3g2s_A C-terminal fragment of 31.5 1E+02 0.0036 30.6 7.4 71 769-839 48-125 (149)
171 2bnx_A Diaphanous protein homo 31.0 1.4E+02 0.0048 34.0 9.4 121 768-888 46-181 (386)
172 2kn9_A Rubredoxin; metalloprot 30.9 19 0.00066 32.7 1.8 19 637-655 50-68 (81)
173 1yk4_A Rubredoxin, RD; electro 29.5 17 0.00058 30.3 1.1 19 637-655 25-43 (52)
174 2kkx_A Uncharacterized protein 29.1 45 0.0015 31.5 3.9 55 641-696 21-81 (102)
175 3zyq_A Hepatocyte growth facto 29.1 90 0.0031 32.9 6.9 71 769-839 45-117 (226)
176 2v3b_B Rubredoxin 2, rubredoxi 28.6 17 0.0006 30.6 1.0 19 637-655 26-44 (55)
177 3tjz_B Coatomer subunit gamma; 28.3 6.6E+02 0.022 28.3 14.2 136 772-935 71-206 (355)
178 3mjh_B Early endosome antigen 27.8 10 0.00034 29.2 -0.6 16 646-661 4-19 (34)
179 1dx8_A Rubredoxin; electron tr 26.2 21 0.00071 31.6 1.1 19 637-655 30-48 (70)
180 6rxn_A Rubredoxin; electron tr 25.6 19 0.00067 29.3 0.7 16 640-655 23-38 (46)
181 1s24_A Rubredoxin 2; electron 25.0 24 0.00083 32.5 1.3 19 637-655 58-76 (87)
182 2of3_A ZYG-9; multifunctional 22.2 1.7E+02 0.0057 31.9 7.5 82 1004-1104 168-252 (266)
183 1dvp_A HRS, hepatocyte growth 21.8 1.6E+02 0.0054 30.7 7.1 71 769-839 42-114 (220)
No 1
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.76 E-value=4.9e-17 Score=195.19 Aligned_cols=325 Identities=14% Similarity=0.071 Sum_probs=222.9
Q ss_pred HHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhc-chhhHHHHHhccchHHHHHHh
Q 041480 742 AIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEA-DAGCRNQMARNINVYSLLELL 820 (1122)
Q Consensus 742 Al~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~-D~snR~~Iae~GaI~pLV~LL 820 (1122)
|...|..|... +..|+..|+..|+||.||.+|.+++.+.+..|+.+|.+++.. +.++|..|++.|+|++||++|
T Consensus 68 Aa~~L~~La~~-----~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL 142 (584)
T 3l6x_A 68 AAAYLQHLCYR-----NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLL 142 (584)
T ss_dssp HHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHcC-----ChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHH
Confidence 44456555432 235889999999999999999999999999999999999974 578999999999999999999
Q ss_pred hc-CChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhh---cC---------------CcchHHHH
Q 041480 821 HS-KQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQ---RS---------------PPEQRPLF 881 (1122)
Q Consensus 821 ~S-Gs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLq---sg---------------s~~~k~lA 881 (1122)
.+ ++...+++|+.+|.+|+..+.++.. |. -++|++|+.++- +| .+..+..|
T Consensus 143 ~s~~~~~~~e~aa~aL~nLS~~~~~k~~------I~----~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nA 212 (584)
T 3l6x_A 143 RKARDMDLTEVITGTLWNLSSHDSIKME------IV----DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNT 212 (584)
T ss_dssp HHCCSHHHHHHHHHHHHHHTTSGGGHHH------HH----HHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCchhhHH------HH----hccHHHHHHHHhcccccccccccccccccccccHHHHHHH
Confidence 97 5778899999999999987666522 22 257899998762 11 24667889
Q ss_pred HHHHHhhccCCChhhhhhhh-hccHHHHHHHHhcc----CCChHHHHHHHHHHHHhhcCCC----CCc------------
Q 041480 882 SILLLHLDLLVEPRKYSIYR-EAAVDAITVALEES----LTDEKIQEKCCRALLILGGRFS----FSR------------ 940 (1122)
Q Consensus 882 A~aLlnLsll~EpnK~sIvR-eGAV~aLV~LL~~g----~~~~~~qe~Aa~AL~~Lag~fS----~sG------------ 940 (1122)
+++|.||+...+.+|..|++ .|+|++||.+|.+. ..+.+.+++|+.+|.||+.+.. ..+
T Consensus 213 a~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~ 292 (584)
T 3l6x_A 213 AGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANN 292 (584)
T ss_dssp HHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----------
T ss_pred HHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccccccc
Confidence 99999999865556888887 67788999999863 3334799999999999996410 000
Q ss_pred ----hhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhH----------HHHh-cCCchhhH
Q 041480 941 ----EVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLS----------ASLL-GNRKRSFL 1005 (1122)
Q Consensus 941 ----e~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a----------~~Lv-~~G~~~~L 1005 (1122)
.+....||. +.++.+.|..+... +....-.|.++ .-+.+++ ..+| .+|. +
T Consensus 293 ~~~~~~~Gve~L~-~~~~v~~Ll~LL~~----------s~~~~v~E~Aa-~AL~nL~ag~~~~~~~~~~~v~~~~g---l 357 (584)
T 3l6x_A 293 TGTSPARGYELLF-QPEVVRIYISLLKE----------SKTPAILEASA-GAIQNLCAGRWTYGRYIRSALRQEKA---L 357 (584)
T ss_dssp ---CCCCGGGGGG-SHHHHHHHHHHHHH----------CCCHHHHHHHH-HHHHHHHSSCSHHHHHHHHHHTSHHH---H
T ss_pred ccccCchhHHHHh-cccHHHHHHHHHcc----------CCCHHHHHHHH-HHHHHHHcCCccccHHHHHHHHHcCc---H
Confidence 000011111 11111222111110 00000012211 1122221 2233 3444 6
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCC-------hhhHHHHHHHhhhhh
Q 041480 1006 ETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQ-------PQQKVLASMSLLNFS 1078 (1122)
Q Consensus 1006 ~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~-------~eer~LA~~aL~~~~ 1078 (1122)
..|.+.|.++..++..++ +|+.+-|+..+++ +..-..+.||+||++|..+.+ .+-.+-|+-+|.|++
T Consensus 358 p~Lv~LL~s~~~~v~~~A----~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~ 431 (584)
T 3l6x_A 358 SAIADLLTNEHERVVKAA----SGALRNLAVDARN--KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVI 431 (584)
T ss_dssp HHHHHGGGCSCHHHHHHH----HHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHH----HHHHHHHhCChhH--HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHh
Confidence 777888999998776665 8999999988774 233357899999999997642 233455777899997
Q ss_pred C-CcchhhhHHHHhhHhHHHhhhhccc
Q 041480 1079 K-IPECGAVLKTIAAEIRIPLQSLTEV 1104 (1122)
Q Consensus 1079 ~-~~~~~~~L~~~a~gi~~~Lr~L~~~ 1104 (1122)
. ++++++.+ ...|....|-.|.+-
T Consensus 432 a~~~~~~~~I--~~~g~I~~Lv~LL~s 456 (584)
T 3l6x_A 432 AENLEAAKKL--RETQGIEKLVLINKS 456 (584)
T ss_dssp TTCHHHHHHH--HHTTHHHHHHHHHTC
T ss_pred cCCHHHHHHH--HHCCChHHHHHHHhC
Confidence 5 48888877 677888888777654
No 2
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.75 E-value=5.5e-19 Score=161.83 Aligned_cols=75 Identities=25% Similarity=0.354 Sum_probs=69.5
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHhccc
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSENCM 717 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~n~~ 717 (1122)
...+|++|.||||+++|+|||+++|||+|||.||++||.. ..+||+|++++.... +.||..|+++|+.|+.++..
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~-l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESM-LEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGG-CEECHHHHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHh-cchHHHHHHHHHHHHHHhhh
Confidence 5678999999999999999999999999999999999995 689999999999888 59999999999999987653
No 3
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.74 E-value=5.4e-17 Score=184.14 Aligned_cols=270 Identities=15% Similarity=0.109 Sum_probs=207.3
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhhcchhhHHHHHh
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFES-----------GKLEEKARVAALMCCCIEADAGCRNQMAR 809 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~s-----------gs~Eek~~AaalL~~La~~D~snR~~Iae 809 (1122)
.|+.+|..|.. +.+||..|++.|+++.|+.+|.. .+.+.+..|+.+|.+++..++.+|..|..
T Consensus 51 ~A~~aL~nls~------d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 51 PAVCVLMKLSF------DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp HHHHHHHHHHT------SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHcC------CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45556666542 13699999999999999999952 23567888999999998777778888865
Q ss_pred -ccchHHHHHHhhcCChhHHHHHHHHHHHHHcc--cCccchHHHHHhhhhhhhhhhHHHHHHHh-hcCCcchHHHHHHHH
Q 041480 810 -NINVYSLLELLHSKQVKPRTNTVLLLIDLICL--SRRRDVSTLLRNVQNEELVNAMHVLLLYL-QRSPPEQRPLFSILL 885 (1122)
Q Consensus 810 -~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~--~~~k~~~~~L~~I~~eG~~gaI~~Ll~lL-qsgs~~~k~lAA~aL 885 (1122)
.|.|++||.+|.+++...+++|+.+|.+|+.. ++++. .|. ..|+|++|+.+| +++++..+..|+.+|
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~------~i~---~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL 195 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKK------TLR---EVGSVKALMECALEVKKESTLKSVLSAL 195 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHH------HHH---HTTHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHH------HHH---HCCCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 56699999999999999999999999999864 22331 123 248999999975 567788899999999
Q ss_pred HhhccCCChhhhhhh-hhccHHHHHHHHhccCCCh--HHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccC
Q 041480 886 LHLDLLVEPRKYSIY-REAAVDAITVALEESLTDE--KIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNS 962 (1122)
Q Consensus 886 lnLsll~EpnK~sIv-ReGAV~aLV~LL~~g~~~~--~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~ 962 (1122)
.+|+...+.+|..|+ .+|+|++||.+|..+.... ..++.|+.+|.+|+... +|.
T Consensus 196 ~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~--------------------- 252 (354)
T 3nmw_A 196 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATN--------------------- 252 (354)
T ss_dssp HHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH--TTC---------------------
T ss_pred HHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc--cCC---------------------
Confidence 999985556899998 7999999999998765421 37999999999998410 000
Q ss_pred CCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchh
Q 041480 963 LDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEF 1042 (1122)
Q Consensus 963 ~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~ 1042 (1122)
++. + ..++..|. +..|.+.|.++..++...| +|...-|....+...
T Consensus 253 ------------------~~~-------~--~~i~~~g~---i~~Lv~lL~~~~~~v~~~A----~~aL~nLa~~~~~~~ 298 (354)
T 3nmw_A 253 ------------------EDH-------R--QILRENNC---LQTLLQHLKSHSLTIVSNA----CGTLWNLSARNPKDQ 298 (354)
T ss_dssp ------------------HHH-------H--HHHHTTTH---HHHHHHHTTCSCHHHHHHH----HHHHHHHTSSCHHHH
T ss_pred ------------------HHH-------H--HHHHHcCC---HHHHHHHHcCCChHHHHHH----HHHHHHHhCCCHHHH
Confidence 111 1 25566775 5667777888888877766 777777775444457
Q ss_pred hHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCCcch
Q 041480 1043 QLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIPEC 1083 (1122)
Q Consensus 1043 ~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~~~ 1083 (1122)
+.+...+.||+|+++|+++ ...-|.-|+.+|.||+.+...
T Consensus 299 ~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 299 EALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHH
Confidence 8899999999999999965 456799999999999998544
No 4
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.74 E-value=1.8e-16 Score=184.29 Aligned_cols=337 Identities=14% Similarity=0.152 Sum_probs=223.8
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHH
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLEL 819 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~L 819 (1122)
..|...|..|... +..++..|+..|+||.||.+|.+++.+.+..|+.+|.+++..++++|..|++.|+|++|+++
T Consensus 20 ~~A~~~L~~l~~~-----~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~l 94 (457)
T 1xm9_A 20 AIGAYYIQHTCFQ-----DESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL 94 (457)
T ss_dssp HHHHHHHHHHTSS-----CSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcC-----ChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence 3455667776532 12356689999999999999999999999999999999987668999999999999999999
Q ss_pred hh-cCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhh--------cCCcchHH--------HHH
Q 041480 820 LH-SKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQ--------RSPPEQRP--------LFS 882 (1122)
Q Consensus 820 L~-SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLq--------sgs~~~k~--------lAA 882 (1122)
|. +++...+++|+.+|.+|+..+.++.. |. . |+|++|+.++. +.....+. .|+
T Consensus 95 L~~~~~~~~~~~a~~aL~nLa~~~~~~~~------i~---~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~ 164 (457)
T 1xm9_A 95 LRRTGNAEIQKQLTGLLWNLSSTDELKEE------LI---A-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNAT 164 (457)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHTSSSTHHH------HH---H-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHHhcCHHhHHH------HH---h-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHH
Confidence 98 88999999999999999987655421 12 3 89999999993 33333333 899
Q ss_pred HHHHhhccCCChhhhhhhhh-ccHHHHHHHHhcc----CCChHHHHHHHHHHHHhhcCCC---CCchhh-----------
Q 041480 883 ILLLHLDLLVEPRKYSIYRE-AAVDAITVALEES----LTDEKIQEKCCRALLILGGRFS---FSREVA----------- 943 (1122)
Q Consensus 883 ~aLlnLsll~EpnK~sIvRe-GAV~aLV~LL~~g----~~~~~~qe~Aa~AL~~Lag~fS---~sGe~~----------- 943 (1122)
.+|.||+.. ++++..|.+. |+|++|+.+|.++ ..+.+.+++|..+|.+|+.+.. ..|...
T Consensus 165 ~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~ 243 (457)
T 1xm9_A 165 GCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243 (457)
T ss_dssp HHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC------
T ss_pred HHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccccc
Confidence 999999986 6688888886 9999999999863 2233688999999999973210 001000
Q ss_pred -------------------------------hhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHH---
Q 041480 944 -------------------------------NESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWL--- 989 (1122)
Q Consensus 944 -------------------------------~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~--- 989 (1122)
...+++ .+|+.+.+..++. .+. .++-.+.-.|-
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~lL~----------~~~--~~~~~e~a~~aL~n 310 (457)
T 1xm9_A 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY-HSDAIRTYLNLMG----------KSK--KDATLEACAGALQN 310 (457)
T ss_dssp ----------------------CCCCCSSCCGGGGGG-SHHHHHHHHHHHH----------HCC--CHHHHHHHHHHHHH
T ss_pred ccccchhhccchhhhhccccCCccccccCchHHHHHh-CcchHHHHHHHHh----------hcC--CHHHHHHHHHHHHH
Confidence 000000 0111111111000 000 01111111222
Q ss_pred ---------HHhHHHHh-cCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhc
Q 041480 990 ---------RKLSASLL-GNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQ 1059 (1122)
Q Consensus 990 ---------rk~a~~Lv-~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~ 1059 (1122)
..++...| ..|. +..|.+.|.+++.++.+.. +|+.+-|+..+ ..+..-..+.+|+|+++|.
T Consensus 311 l~~~~~~~~~~~~~~~v~~~~~---l~~Lv~LL~~~~~~v~~~A----~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~ 381 (457)
T 1xm9_A 311 LTASKGLMSSGMSQLIGLKEKG---LPQIARLLQSGNSDVVRSG----ASLLSNMSRHP--LLHRVMGNQVFPEVTRLLT 381 (457)
T ss_dssp HTTCSSSHHHHHHHHHHTTSCC---HHHHHHHTTCSCHHHHHHH----HHHHHHHHTSG--GGHHHHHHHTHHHHHHTTT
T ss_pred hccCcCcchHHHHHHHHHHcCC---chHHHHHHhCCCHhHHHHH----HHHHHHHhcCH--HHHHHHHHhhhHHHHHhcc
Confidence 12323344 4665 5667777999999888776 78888887743 3555556689999999999
Q ss_pred CCCC---hhhHH--HHHHHhhhhhCC-cchhhhHHHHhhHhHHHhhhhccch---hhHHHHHHHHh
Q 041480 1060 NGEQ---PQQKV--LASMSLLNFSKI-PECGAVLKTIAAEIRIPLQSLTEVT---WTTQELCAIIA 1116 (1122)
Q Consensus 1060 ~~~~---~eer~--LA~~aL~~~~~~-~~~~~~L~~~a~gi~~~Lr~L~~~t---w~A~el~~~~~ 1116 (1122)
.+.. ..+++ -++-+|.|++.+ ++..+.+ ...|..+.|-+|.... =.-++...+|+
T Consensus 382 ~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i--~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~ 445 (457)
T 1xm9_A 382 SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQY--FSSSMLNNIINLCRSSASPKAAEAARLLLS 445 (457)
T ss_dssp SCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHH--CCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHH--HHcCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 7532 23333 455578888765 5555555 5678888888887654 24555555553
No 5
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.73 E-value=1.5e-18 Score=163.88 Aligned_cols=75 Identities=25% Similarity=0.339 Sum_probs=70.0
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHhccc
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSENCM 717 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~n~~ 717 (1122)
...+|++|.||||+++|+|||+++|||+|||.||++||. +..+||+|++++.... +.||..|+++|+.|+.+|..
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~-L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESM-LEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTS-SEECHHHHHHHHHHHHTTTC
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhh-ceECHHHHHHHHHHHHHhhh
Confidence 567899999999999999999999999999999999998 4789999999999888 59999999999999988764
No 6
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.73 E-value=2.1e-18 Score=162.24 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=70.8
Q ss_pred CccCCCCCcccccccchhccCCcccCCC-cccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHhccc
Q 041480 639 SFLTSIPQDFICPLTGQLFEEPVTLESG-QTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSENCM 717 (1122)
Q Consensus 639 ~~~~~ipeef~CPIc~elm~DPVtl~cG-hTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~n~~ 717 (1122)
..+..+|++|+||||+++|+|||+++|| |+|||.||++||.. ..+||+|++++.... ++||+.|+++|+.|+.++..
T Consensus 14 ~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~-L~pn~~Lk~~I~~~~~~~~~ 91 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQ-IRPNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTT-SEECHHHHHHHHHHHHHSTT
T ss_pred hhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhh-ceEcHHHHHHHHHHHHHcch
Confidence 3467789999999999999999999999 99999999999986 679999999999888 59999999999999988764
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.73 E-value=1.2e-16 Score=197.86 Aligned_cols=286 Identities=14% Similarity=0.096 Sum_probs=223.2
Q ss_pred hHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHccc
Q 041480 763 KHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLS 842 (1122)
Q Consensus 763 ~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~ 842 (1122)
..|++.|+||.|+.+|.+++++.|+.++.+|.+++. +.++|..|.+.|++++|+.+|.+++...|++|+.+|.+|+...
T Consensus 489 ~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~ 567 (810)
T 3now_A 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITI 567 (810)
T ss_dssp HHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCC
Confidence 678899999999999999999999999999999986 6789999999999999999999999999999999999998654
Q ss_pred CccchHHHHHhhhhhhhhhhHHHHHHHhhcCC-cchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHH
Q 041480 843 RRRDVSTLLRNVQNEELVNAMHVLLLYLQRSP-PEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKI 921 (1122)
Q Consensus 843 ~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs-~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~ 921 (1122)
....+ +. .....|++++|+.+|.++. ...+..|+.+|.||+...+.++..|+++|+++.|+.+|.++.. .+
T Consensus 568 ~p~~~---~~---~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~--~V 639 (810)
T 3now_A 568 NPEVS---FS---GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHL--YL 639 (810)
T ss_dssp CHHHH---TT---THHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCT--TH
T ss_pred Chhhh---hc---chhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCH--HH
Confidence 43211 10 0013479999999998653 3456689999999998766789999999999999999998765 59
Q ss_pred HHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHhcCCc
Q 041480 922 QEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRK 1001 (1122)
Q Consensus 922 qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~ 1001 (1122)
|+.|+.+|.||+.+ .. ....++ .+.|.
T Consensus 640 q~~A~~~L~NLa~~-----~~-~~~~~v-----------------------------------------------~~~g~ 666 (810)
T 3now_A 640 TRAAAQCLCNLVMS-----ED-VIKMFE-----------------------------------------------GNNDR 666 (810)
T ss_dssp HHHHHHHHHHHTTS-----HH-HHHHHH-----------------------------------------------SSSSH
T ss_pred HHHHHHHHHHHhCC-----hH-HHHHHH-----------------------------------------------hccCc
Confidence 99999999999952 21 111111 01222
Q ss_pred hhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhH-HHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCC
Q 041480 1002 RSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAF-SAVISQLKEILQNGEQPQQKVLASMSLLNFSKI 1080 (1122)
Q Consensus 1002 ~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~-~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~ 1080 (1122)
+..|...+.+...++..++ +|+...|+.-.+...+.+.. .+.+|+|+++|++ .+.+-|.-|+.+|.|++.+
T Consensus 667 ---l~~Lv~LL~s~d~~vq~~A----a~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s-~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 667 ---VKFLALLCEDEDEETATAC----AGALAIITSVSVKCCEKILAIASWLDILHTLIAN-PSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp ---HHHHHHGGGCSSHHHHHHH----HHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHhcCCCHHHHHHH----HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHhC
Confidence 4666666777777777776 78888888744434677777 8999999999995 4578899999999999985
Q ss_pred -cchhhhHHHHhhHhHHHhhhhccch--------hhHHHHHHHHhcCCC
Q 041480 1081 -PECGAVLKTIAAEIRIPLQSLTEVT--------WTTQELCAIIAGRSL 1120 (1122)
Q Consensus 1081 -~~~~~~L~~~a~gi~~~Lr~L~~~t--------w~A~el~~~~~~~~l 1120 (1122)
+++.+.+ .+.|+.++|.+|...+ =+|.+.++-|-+-.+
T Consensus 739 s~e~~~~l--~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 739 GEEIAKKL--FETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp CHHHHHHH--HTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHH--HHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 5566666 6779999999996443 256666666544333
No 8
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.71 E-value=3e-18 Score=177.39 Aligned_cols=77 Identities=27% Similarity=0.358 Sum_probs=71.1
Q ss_pred ccCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHhccc
Q 041480 640 FLTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSENCM 717 (1122)
Q Consensus 640 ~~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~n~~ 717 (1122)
....+|++|+||||+++|+|||+++|||||||.||+.||..++.+||+|++++.... ++||+.|+++|+.|+..|+.
T Consensus 99 ~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~-L~pN~~Lk~~Ie~~~~~~~~ 175 (179)
T 2f42_A 99 KKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ-LIPNLAMKEVIDAFIQENGW 175 (179)
T ss_dssp GCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG-CEECHHHHHHHHHHHHHCTT
T ss_pred cccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh-CcchHHHHHHHHHHHHHCCC
Confidence 356889999999999999999999999999999999999986568999999999888 59999999999999998864
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.69 E-value=6.5e-16 Score=185.48 Aligned_cols=304 Identities=14% Similarity=0.074 Sum_probs=213.1
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcc--cCc
Q 041480 767 SIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICL--SRR 844 (1122)
Q Consensus 767 saGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~--~~~ 844 (1122)
..+.||.||.+|.+++.+.|..|+..|.+++..+..+|..|++.|+|++||++|.+++...+++|+.+|.+|+.. .++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 458999999999999999999999999888877889999999999999999999999999999999999999863 344
Q ss_pred cchHHHHHhhhhhhhhhhHHHHHHHhhcC-CcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHh---cc-----
Q 041480 845 RDVSTLLRNVQNEELVNAMHVLLLYLQRS-PPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALE---ES----- 915 (1122)
Q Consensus 845 k~~~~~L~~I~~eG~~gaI~~Ll~lLqsg-s~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~---~g----- 915 (1122)
+.. |. ..|+|++|+.+|+++ +.+.+..|+++|++|+. ++.+|..|++ |||++||.+|. ++
T Consensus 126 k~~------I~---~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 126 KIA------IK---NCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp HHH------HH---HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC---
T ss_pred HHH------HH---HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccc
Confidence 422 23 358999999999985 56779999999999998 4679999995 67999999882 11
Q ss_pred --------CCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCC-CCCCCCCCCCCCCchhHHhHH
Q 041480 916 --------LTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDN-DENDLPVDDSTPLDDEEQASE 986 (1122)
Q Consensus 916 --------~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~-~~~d~~~d~~~~~~~ee~~~~ 986 (1122)
..+..++++|+.||.||+.+ ....+..+.+..|+++.+..+..+. ...+ .+. ...|. +.
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~-----~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~--~~~----~~~en-av 262 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSE-----RSEARRKLRECDGLVDALIFIVQAEIGQKD--SDS----KLVEN-CV 262 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSS-----CHHHHHHHHHSTTHHHHHHHHHHHHHHTTC--CSC----HHHHH-HH
T ss_pred cccccccccccHHHHHHHHHHHHHHhcC-----CHHHHHHHHHcCCcHHHHHHHHHHhhcccC--ccH----HHHHH-HH
Confidence 11347999999999999974 2234666667788776554321100 0000 000 00111 11
Q ss_pred HHHHHhHHH-----------------------HhcCCchh------hHHHHHHhhc-cCCchhHHHHHHHHHHHHhhhcc
Q 041480 987 EWLRKLSAS-----------------------LLGNRKRS------FLETVSKILG-SRNSDLVSVCLTTVAWLSHALSA 1036 (1122)
Q Consensus 987 ~w~rk~a~~-----------------------Lv~~G~~~------~L~aL~~~l~-s~~~~l~~acL~t~aWl~~~L~~ 1036 (1122)
.-+++++.. ....|+.. .+..|...|. +.++++..++ +|...-|..
T Consensus 263 ~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~A----a~AL~nL~a 338 (584)
T 3l6x_A 263 CLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS----AGAIQNLCA 338 (584)
T ss_dssp HHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHH----HHHHHHHHS
T ss_pred HHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHH----HHHHHHHHc
Confidence 111222211 11223322 2345566664 5567776666 777777766
Q ss_pred CCCc---hhh-HhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCCcchhhhHHHHhhHhHHHhhhh
Q 041480 1037 QPDA---EFQ-LSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIPECGAVLKTIAAEIRIPLQSL 1101 (1122)
Q Consensus 1037 ~~~t---~~~-~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~~~~~~L~~~a~gi~~~Lr~L 1101 (1122)
.... .++ .+..+..+|.|+.+|+++. .+-+.-|+.+|.|++.++.++..+ .+|++..|-.|
T Consensus 339 g~~~~~~~~~~~v~~~~glp~Lv~LL~s~~-~~v~~~A~~aL~nLs~~~~~~~~I---~~g~ip~LV~L 403 (584)
T 3l6x_A 339 GRWTYGRYIRSALRQEKALSAIADLLTNEH-ERVVKAASGALRNLAVDARNKELI---GKHAIPNLVKN 403 (584)
T ss_dssp SCSHHHHHHHHHHTSHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHTTCSCHHHH---HHHHHHHHHHT
T ss_pred CCccccHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhCChhHHHHH---HhCCHHHHHHH
Confidence 5421 233 3445788999999999664 578888999999999999887655 45555555433
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.68 E-value=6.3e-16 Score=181.05 Aligned_cols=268 Identities=16% Similarity=0.124 Sum_probs=205.1
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhhcchhhHHHHHh
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFES-----------GKLEEKARVAALMCCCIEADAGCRNQMAR 809 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~s-----------gs~Eek~~AaalL~~La~~D~snR~~Iae 809 (1122)
.|+.+|-.|. + +.+||..|++.|++++|+.+|.. .+.+.+..|+.+|.+++..++.+|..|..
T Consensus 167 qAv~aL~nls--~----~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~ 240 (458)
T 3nmz_A 167 PAVCVLMKLS--F----DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 240 (458)
T ss_dssp HHHHHHHHHT--T----SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhc--C----CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 4566666662 2 24699999999999999999942 23556888999999988777678888864
Q ss_pred -ccchHHHHHHhhcCChhHHHHHHHHHHHHHccc--CccchHHHHHhhhhhhhhhhHHHHHHHh-hcCCcchHHHHHHHH
Q 041480 810 -NINVYSLLELLHSKQVKPRTNTVLLLIDLICLS--RRRDVSTLLRNVQNEELVNAMHVLLLYL-QRSPPEQRPLFSILL 885 (1122)
Q Consensus 810 -~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~--~~k~~~~~L~~I~~eG~~gaI~~Ll~lL-qsgs~~~k~lAA~aL 885 (1122)
.|.|++||.+|.+++...+++|+.+|.+|+..+ +++. .|. ..|+|++|+.+| +++++..+..|+.+|
T Consensus 241 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~------~I~---~~GaI~~LV~lLl~s~~~~v~~~A~~aL 311 (458)
T 3nmz_A 241 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKK------TLR---EVGSVKALMECALEVKKESTLKSVLSAL 311 (458)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHH------HHH---HTTHHHHHHHHHTTCCSHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHH------HHH---HcCCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 566999999999999999999999999998642 2221 123 248999999974 556778899999999
Q ss_pred HhhccCCChhhhhhh-hhccHHHHHHHHhccCCCh--HHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccC
Q 041480 886 LHLDLLVEPRKYSIY-REAAVDAITVALEESLTDE--KIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNS 962 (1122)
Q Consensus 886 lnLsll~EpnK~sIv-ReGAV~aLV~LL~~g~~~~--~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~ 962 (1122)
.||+...+.+|..|+ ..|+|++|+.+|..+.... ..++.|+.+|.+|+... .|.
T Consensus 312 ~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~--------------------- 368 (458)
T 3nmz_A 312 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATN--------------------- 368 (458)
T ss_dssp HHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH--TTC---------------------
T ss_pred HHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc--cCC---------------------
Confidence 999984456899998 7999999999998765421 37999999999998410 000
Q ss_pred CCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchh
Q 041480 963 LDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEF 1042 (1122)
Q Consensus 963 ~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~ 1042 (1122)
++. + ..++..|. +..|.+.|+++..++...+ +|...-|....+...
T Consensus 369 ------------------~~~-------~--~~i~~~G~---i~~Lv~LL~~~~~~v~~~A----~~aL~nLa~~~~~~~ 414 (458)
T 3nmz_A 369 ------------------EDH-------R--QILRENNC---LQTLLQHLKSHSLTIVSNA----CGTLWNLSARNPKDQ 414 (458)
T ss_dssp ------------------HHH-------H--HHHHHTTH---HHHHHHHSSCSCHHHHHHH----HHHHHHHHSSCHHHH
T ss_pred ------------------HHH-------H--HHHHHccc---HHHHHHHHcCCChHHHHHH----HHHHHHHHcCCHHHH
Confidence 110 1 25566775 5667777888888877766 777777775444457
Q ss_pred hHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCCc
Q 041480 1043 QLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIP 1081 (1122)
Q Consensus 1043 ~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~ 1081 (1122)
+.+...+.||+|+++|+++ .-.-|.-|+.+|.||+.+.
T Consensus 415 ~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 415 EALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999964 5667899999999999873
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.67 E-value=1.2e-15 Score=179.40 Aligned_cols=323 Identities=13% Similarity=0.086 Sum_probs=230.8
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHH
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFES-GKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLE 818 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~s-gs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~ 818 (1122)
..|...+++|++.- .+ .-...|+..|+||.||.+|.. ++.+.|..|+.+|.+++..+.+++..|++.|+|+.|+.
T Consensus 75 ~~a~~~~rklls~e---~~-ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~ 150 (510)
T 3ul1_B 75 LQATQAARKLLSRE---KQ-PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150 (510)
T ss_dssp HHHHHHHHHHHTCS---SC-CCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHhcCC---CC-chHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH
Confidence 34666788887532 11 123578899999999999974 56888999999999998778889999999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcc-----hHHHHHHHHHhhccCCC
Q 041480 819 LLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPE-----QRPLFSILLLHLDLLVE 893 (1122)
Q Consensus 819 LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~-----~k~lAA~aLlnLsll~E 893 (1122)
+|.+++...|+.|+.+|.+|+..... ... .+. ..|++.+|+.+++..... ....++.+|.+++....
T Consensus 151 lL~s~~~~v~e~A~~aL~nLa~d~~~--~r~---~v~---~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~ 222 (510)
T 3ul1_B 151 LLASPHAHISEQAVWALGNIAGDGSA--FRD---LVI---KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 222 (510)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHH--HHH---HHH---HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCS
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHH--HHH---HHH---HcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999865332 111 122 248999999999865432 35568888999988554
Q ss_pred hhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCC
Q 041480 894 PRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVD 973 (1122)
Q Consensus 894 pnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d 973 (1122)
+......-.|++++|+.+|.+... .++..|+.||.+|+.. ... ...++..+|+.+.+..+.... +..
T Consensus 223 ~~~~~~~~~~~lp~L~~LL~~~~~--~v~~~A~~aL~~L~~~-----~~~-~~~~i~~~g~i~~Lv~lL~~~---~~~-- 289 (510)
T 3ul1_B 223 PAPPLDAVEQILPTLVRLLHHNDP--EVLADSCWAISYLTDG-----PNE-RIEMVVKKGVVPQLVKLLGAT---ELP-- 289 (510)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHTSS-----CHH-HHHHHHTTTCHHHHHHHHTCS---CHH--
T ss_pred chhHHHHHHhHHHHHHHHHhcCCH--HHHHHHHHHHHHHhhc-----hhh-hHHHHHhcccchhhhhhhcCC---Chh--
Confidence 444444557899999999987654 6999999999999953 221 222345677767665543211 000
Q ss_pred CCCCCchhHHhHHHHHH-------HhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhh
Q 041480 974 DSTPLDDEEQASEEWLR-------KLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSA 1046 (1122)
Q Consensus 974 ~~~~~~~ee~~~~~w~r-------k~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A 1046 (1122)
. ... +-.-+. .....++..|..+ .|...|.+...++...+ +|...-|........+.+.
T Consensus 290 ----v--~~~-al~aL~nl~~~~~~~~~~i~~~g~l~---~L~~LL~~~~~~v~~~A----~~aL~nl~a~~~~~~~~v~ 355 (510)
T 3ul1_B 290 ----I--VTP-ALRAIGNIVTGTDEQTQKVIDAGALA---VFPSLLTNPKTNIQKEA----TWTMSNITAGRQDQIQQVV 355 (510)
T ss_dssp ----H--HHH-HHHHHHHHTTSCHHHHHHHHHTTGGG---GCC-CTTCSSHHHHHHH----HHHHHHHTTSCHHHHHHHH
T ss_pred ----h--hhH-HHHHHHHhhcCCHHHHHHHhhccchH---HHHHHhcCCCHHHHHHH----HHHHHHHHcCcHHHHHHHH
Confidence 0 011 111111 2334677788644 45556889988887766 7888888776665578888
Q ss_pred HHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCC--cchhhhHHHHhhHhHHHhhhhccc
Q 041480 1047 FSAVISQLKEILQNGEQPQQKVLASMSLLNFSKI--PECGAVLKTIAAEIRIPLQSLTEV 1104 (1122)
Q Consensus 1047 ~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~--~~~~~~L~~~a~gi~~~Lr~L~~~ 1104 (1122)
..+++|.|+.+|.++ +.+-|.-|+.+|.||+.+ ++.+..| ...|+.++|-+|-..
T Consensus 356 ~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L--~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 356 NHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYL--VHCGIIEPLMNLLSA 412 (510)
T ss_dssp HTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHH--HHTTCHHHHHHGGGC
T ss_pred hcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHH--HHCCCHHHHHHHhcC
Confidence 889999999999965 477899999999999985 3444444 567888888777643
No 12
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.65 E-value=4.7e-17 Score=176.08 Aligned_cols=76 Identities=29% Similarity=0.394 Sum_probs=70.7
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHhccc
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSENCM 717 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~n~~ 717 (1122)
...+|++|+||||+++|+|||+++|||||||.||+.||..+..+||+|+++++... ++||..|+.+|+.|+.+++.
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~-l~~n~~l~~~i~~~~~~~~~ 277 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ-LIPNLAMKEVIDAFISENGW 277 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG-CEECHHHHHHHHHHHTTCSC
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc-CcccHHHHHHHHHHHHHCCC
Confidence 46789999999999999999999999999999999999987777999999999888 59999999999999988764
No 13
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.65 E-value=7.7e-17 Score=143.81 Aligned_cols=75 Identities=32% Similarity=0.744 Sum_probs=70.0
Q ss_pred CCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHhccc
Q 041480 642 TSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSENCM 717 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~n~~ 717 (1122)
..++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||+|++++.... +.||..|+++|+.|..+++.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~-l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG-LTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC-CEECTTTHHHHHHHHHHSCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh-CccCHHHHHHHHHHHHHcCC
Confidence 4679999999999999999999999999999999999988899999999998888 49999999999999988764
No 14
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.64 E-value=2.2e-15 Score=162.13 Aligned_cols=167 Identities=14% Similarity=0.155 Sum_probs=141.3
Q ss_pred hhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhh-cCChhHHHHHHHHHHH
Q 041480 759 ITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLH-SKQVKPRTNTVLLLID 837 (1122)
Q Consensus 759 ~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~-SGs~~aRenAv~aL~e 837 (1122)
..|+..|+..|+||.||.+|.+++.+.|..|+.+|.+++..+++||..|++.|+|++||++|. +++...+++|+.+|++
T Consensus 42 ~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~n 121 (233)
T 3tt9_A 42 SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWN 121 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 358889999999999999999999999999999999999767899999999999999999998 5789999999999999
Q ss_pred HHcccCccchHHHHHhhhhhhhhhhHHHHHHHhh---cC-------------CcchHHHHHHHHHhhccCCChhhhhhhh
Q 041480 838 LICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQ---RS-------------PPEQRPLFSILLLHLDLLVEPRKYSIYR 901 (1122)
Q Consensus 838 Ls~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLq---sg-------------s~~~k~lAA~aLlnLsll~EpnK~sIvR 901 (1122)
|+..+.++.. |.+ ++|++|+.++- +| .++.+..|+++|.||+..++.+|..|.+
T Consensus 122 LS~~~~~k~~------i~~----~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~ 191 (233)
T 3tt9_A 122 LSSNDKLKNL------MIT----EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRR 191 (233)
T ss_dssp HHTSGGGHHH------HHH----HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHcChhhHHH------HHh----ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9988776622 221 46888887542 33 2366788999999999876678988887
Q ss_pred -hccHHHHHHHHhcc----CCChHHHHHHHHHHHHhhcC
Q 041480 902 -EAAVDAITVALEES----LTDEKIQEKCCRALLILGGR 935 (1122)
Q Consensus 902 -eGAV~aLV~LL~~g----~~~~~~qe~Aa~AL~~Lag~ 935 (1122)
.|.|++||.+|+.+ .++.+.+|+|..+|.||+-+
T Consensus 192 ~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 192 CDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp STTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred CCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 58899999999874 33458999999999999965
No 15
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.64 E-value=3.4e-15 Score=173.51 Aligned_cols=295 Identities=17% Similarity=0.142 Sum_probs=204.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcc-cCccchH
Q 041480 770 GLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICL-SRRRDVS 848 (1122)
Q Consensus 770 aIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~-~~~k~~~ 848 (1122)
.+|.||.+|.+++.+.+..|+..|.+++..++.+|..|.+.|+|++||.+|.+++...++.|+.+|.+|+.. ++++..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~- 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE- 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH-
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH-
Confidence 589999999999999999999999998876777888999999999999999999999999999999999975 344321
Q ss_pred HHHHhhhhhhhhhhHHHHHHHhh-cCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhc--------cCC--
Q 041480 849 TLLRNVQNEELVNAMHVLLLYLQ-RSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEE--------SLT-- 917 (1122)
Q Consensus 849 ~~L~~I~~eG~~gaI~~Ll~lLq-sgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~--------g~~-- 917 (1122)
|.+ .|+|++|+.+|+ +++++.+..|+.+|.||+.. +.+|..|++ |||++|+.+|.. ...
T Consensus 82 -----i~~---~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~ 151 (457)
T 1xm9_A 82 -----TRR---QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMS 151 (457)
T ss_dssp -----HHH---TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC-------
T ss_pred -----HHH---cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchh
Confidence 232 489999999999 88899999999999999986 669999999 999999999932 211
Q ss_pred ----ChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCC----CCCCCCCCCCCCCCchhHHhHHHHH
Q 041480 918 ----DEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLD----NDENDLPVDDSTPLDDEEQASEEWL 989 (1122)
Q Consensus 918 ----~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~----~~~~d~~~d~~~~~~~ee~~~~~w~ 989 (1122)
+...+..|+.||.+|++. +..+..+.+..|..+.+..+..+ ....+.. -|.+. .-+
T Consensus 152 ~e~~~~~v~~~a~~aL~nLs~~------~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~---------~e~a~-~~L 215 (457)
T 1xm9_A 152 REVVDPEVFFNATGCLRNLSSA------DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKS---------VENCM-CVL 215 (457)
T ss_dssp --CCCHHHHHHHHHHHHHHTTS------HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTT---------HHHHH-HHH
T ss_pred cccccHHHHHHHHHHHHHHccC------HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHH---------HHHHH-HHH
Confidence 123445999999999962 34555554432766665433211 0000000 11111 111
Q ss_pred HHhH---------------------------------------------------------HHHhcCCchhhHHHHHHhh
Q 041480 990 RKLS---------------------------------------------------------ASLLGNRKRSFLETVSKIL 1012 (1122)
Q Consensus 990 rk~a---------------------------------------------------------~~Lv~~G~~~~L~aL~~~l 1012 (1122)
++++ ..|+..| .+..|...|
T Consensus 216 ~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~l~~L~~lL 292 (457)
T 1xm9_A 216 HNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSD---AIRTYLNLM 292 (457)
T ss_dssp HHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHH---HHHHHHHHH
T ss_pred HhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcc---hHHHHHHHH
Confidence 2211 0112222 234444555
Q ss_pred c-cCCchhHHHHHHHHHHHHhhhccCCCch---h-hHhh-HHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCCcchhhh
Q 041480 1013 G-SRNSDLVSVCLTTVAWLSHALSAQPDAE---F-QLSA-FSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIPECGAV 1086 (1122)
Q Consensus 1013 ~-s~~~~l~~acL~t~aWl~~~L~~~~~t~---~-~~~A-~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~~~~~~ 1086 (1122)
. ++++.+..++ +|...-|....+.- + |.+. ..+.+|.|+++|+++. -+-|.-|+.+|.|++.+++.+..
T Consensus 293 ~~~~~~~~~e~a----~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~-~~v~~~A~~aL~nls~~~~~~~~ 367 (457)
T 1xm9_A 293 GKSKKDATLEAC----AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN-SDVVRSGASLLSNMSRHPLLHRV 367 (457)
T ss_dssp HHCCCHHHHHHH----HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSGGGHHH
T ss_pred hhcCCHHHHHHH----HHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC-HhHHHHHHHHHHHHhcCHHHHHH
Confidence 4 3345555444 78888888765431 2 3222 3678999999999775 56788899999999999988665
Q ss_pred HHHHhhHhHHHhhhhc
Q 041480 1087 LKTIAAEIRIPLQSLT 1102 (1122)
Q Consensus 1087 L~~~a~gi~~~Lr~L~ 1102 (1122)
+ .+++..+|=+|-
T Consensus 368 i---~~~~i~~Lv~lL 380 (457)
T 1xm9_A 368 M---GNQVFPEVTRLL 380 (457)
T ss_dssp H---HHHTHHHHHHTT
T ss_pred H---HHhhhHHHHHhc
Confidence 5 345566555544
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.64 E-value=1.5e-14 Score=170.54 Aligned_cols=285 Identities=14% Similarity=0.119 Sum_probs=216.5
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHh
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELL 820 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL 820 (1122)
.|..+|..|.... ..++..|+..|+||.|+.+|.+.+.+.+..|+.+|.+++..+..+|..|.+.|++++|+.+|
T Consensus 139 ~Aa~aL~nia~~~-----~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL 213 (529)
T 3tpo_A 139 ESAWALTNIASGT-----SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALL 213 (529)
T ss_dssp HHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHHcCC-----HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHH
Confidence 4555666665432 34677899999999999999999999999999999999987789999999999999999999
Q ss_pred hcCC-----hhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChh
Q 041480 821 HSKQ-----VKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPR 895 (1122)
Q Consensus 821 ~SGs-----~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~Epn 895 (1122)
...+ .....+|+.+|.+|+.......... ...+++++|+.+|++++++.+..|+.+|.+|+...+..
T Consensus 214 ~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~--------~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~ 285 (529)
T 3tpo_A 214 AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD--------AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 285 (529)
T ss_dssp CSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH--------HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred hccchhHhHHHHHHHHHHHHHHHHhcccchhhHH--------HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhh
Confidence 7643 3467889999999886544331111 12478899999999999999999999999998865556
Q ss_pred hhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCC
Q 041480 896 KYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDS 975 (1122)
Q Consensus 896 K~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~ 975 (1122)
...++..|+++.||.+|.+... .++..|+.+|.+|+.+ .....
T Consensus 286 ~~~v~~~g~i~~Lv~lL~~~~~--~v~~~a~~aL~nl~~~-----~~~~~------------------------------ 328 (529)
T 3tpo_A 286 IEMVVKKGVVPQLVKLLGATEL--PIVTPALRAIGNIVTG-----TDEQT------------------------------ 328 (529)
T ss_dssp HHHHHTTTCHHHHHHHHTCSCH--HHHHHHHHHHHHHTTS-----CHHHH------------------------------
T ss_pred HHHHHhccchHHHHHHhcCCCh--hHHHHHHHHHHHHHcc-----chHHH------------------------------
Confidence 6678899999999999987654 6899999999999742 11111
Q ss_pred CCCchhHHhHHHHHHHhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHH
Q 041480 976 TPLDDEEQASEEWLRKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLK 1055 (1122)
Q Consensus 976 ~~~~~ee~~~~~w~rk~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv 1055 (1122)
..++..|..+. |...|.+....+...+ +|...-|......-.+.+...+++|.|+
T Consensus 329 ------------------~~i~~~g~l~~---L~~LL~~~~~~i~~~a----~~aL~nl~~~~~~~~~~v~~~g~i~~Lv 383 (529)
T 3tpo_A 329 ------------------QKVIDAGALAV---FPSLLTNPKTNIQKEA----TWTMSNITAGRQDQIQQVVNHGLVPFLV 383 (529)
T ss_dssp ------------------HHHHHTTGGGG---HHHHTTCSSHHHHHHH----HHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred ------------------HHHhhcccHHH---HHHHHcCCCHHHHHHH----HHHHHHHhcccHHHHHHHHhcCcHHHHH
Confidence 23344554333 3334666666666555 6777777766554467777889999999
Q ss_pred HhhcCCCChhhHHHHHHHhhhhhCC--cchhhhHHHHhhHhHHHhhhhcc
Q 041480 1056 EILQNGEQPQQKVLASMSLLNFSKI--PECGAVLKTIAAEIRIPLQSLTE 1103 (1122)
Q Consensus 1056 ~~L~~~~~~eer~LA~~aL~~~~~~--~~~~~~L~~~a~gi~~~Lr~L~~ 1103 (1122)
.+|.++. .+-|.-|+.+|.||+.+ ++....| ...|+.++|-+|-.
T Consensus 384 ~lL~~~~-~~v~~~A~~aL~nl~~~~~~~~~~~l--~~~g~i~~L~~LL~ 430 (529)
T 3tpo_A 384 GVLSKAD-FKTQKAAAWAITNYTSGGTVEQIVYL--VHCGIIEPLMNLLS 430 (529)
T ss_dssp HHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHHHH--HHTTCHHHHHHGGG
T ss_pred HHhcCCC-HHHHHHHHHHHHHHHcCCCHHHHHHH--HHCcCHHHHHHHhc
Confidence 9999654 67888999999999975 3443444 56788888877754
No 17
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.64 E-value=9.8e-14 Score=163.17 Aligned_cols=298 Identities=12% Similarity=0.081 Sum_probs=218.2
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHH
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLEL 819 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~L 819 (1122)
..|..+|..|.+.. .+++..|+..|+||.|+.+|.+++.+.+..|+.+|.+++..++.+|..|.+.|++++|+.+
T Consensus 119 ~~Aa~aL~nias~~-----~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~l 193 (510)
T 3ul1_B 119 FESAWALTNIASGT-----SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193 (510)
T ss_dssp HHHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCC-----HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHH
Confidence 34566677766542 3578889999999999999999999999999999999998778899999999999999999
Q ss_pred hhcCC-----hhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCCh
Q 041480 820 LHSKQ-----VKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEP 894 (1122)
Q Consensus 820 L~SGs-----~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~Ep 894 (1122)
|.+.+ ...+.+|+.+|.+++.......... ...+++++|+.+|++.+++.+..|+.+|.+|+...+.
T Consensus 194 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~--------~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~ 265 (510)
T 3ul1_B 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD--------AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 265 (510)
T ss_dssp TCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHH--------HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHhccchhhhHHHHHHHHHHHHHHhhcccchhHHH--------HHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhh
Confidence 98654 3467889999999886544331110 1237889999999999999999999999999875554
Q ss_pred hhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCC
Q 041480 895 RKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDD 974 (1122)
Q Consensus 895 nK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~ 974 (1122)
....++..|+++.|+.+|.+... .++..|+++|.+|+.. .......++. .|+.+.+..+..+.
T Consensus 266 ~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~al~aL~nl~~~-----~~~~~~~i~~-~g~l~~L~~LL~~~--------- 328 (510)
T 3ul1_B 266 RIEMVVKKGVVPQLVKLLGATEL--PIVTPALRAIGNIVTG-----TDEQTQKVID-AGALAVFPSLLTNP--------- 328 (510)
T ss_dssp HHHHHHTTTCHHHHHHHHTCSCH--HHHHHHHHHHHHHTTS-----CHHHHHHHHH-TTGGGGCC-CTTCS---------
T ss_pred hHHHHHhcccchhhhhhhcCCCh--hhhhHHHHHHHHhhcC-----CHHHHHHHhh-ccchHHHHHHhcCC---------
Confidence 56668899999999999997654 6999999999999853 2223334444 55556665533211
Q ss_pred CCCCchhHHhHHHHH-HH-------hHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCc-hhhHh
Q 041480 975 STPLDDEEQASEEWL-RK-------LSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDA-EFQLS 1045 (1122)
Q Consensus 975 ~~~~~~ee~~~~~w~-rk-------~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t-~~~~~ 1045 (1122)
.++-...-.|. .+ ....++..|. +..|...+.++..++...| +|...-|....+. .+...
T Consensus 329 ----~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~---i~~Lv~lL~~~~~~v~~~A----a~aL~Nl~~~~~~~~~~~L 397 (510)
T 3ul1_B 329 ----KTNIQKEATWTMSNITAGRQDQIQQVVNHGL---VPFLVGVLSKADFKTQKEA----AWAITNYTSGGTVEQIVYL 397 (510)
T ss_dssp ----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH---HHHHHHHHHSSCHHHHHHH----HHHHHHHHHHCCHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCC---HHHHHHHHcCCCHHHHHHH----HHHHHHHHccCCHHHHHHH
Confidence 01111112232 22 2235666774 6778888999999998887 6666665554433 35778
Q ss_pred hHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhC
Q 041480 1046 AFSAVISQLKEILQNGEQPQQKVLASMSLLNFSK 1079 (1122)
Q Consensus 1046 A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~ 1079 (1122)
...++|++|+++|+. .+.+-+..+.-+|.|++.
T Consensus 398 ~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 398 VHCGIIEPLMNLLSA-KDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 889999999999995 455666666778888775
No 18
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.7e-16 Score=146.42 Aligned_cols=75 Identities=28% Similarity=0.484 Sum_probs=64.8
Q ss_pred CCCCcccccccchhccCCcccC-CCcccchHHHHHHHHhC-----CCCCCCCCC--c-CCCCCCCcchHHHHHHHHHHHH
Q 041480 643 SIPQDFICPLTGQLFEEPVTLE-SGQTFECEAIKEWIEQG-----NRTCPVTGK--Y-LACPSLPLTNFILKRVIDGWKS 713 (1122)
Q Consensus 643 ~ipeef~CPIc~elm~DPVtl~-cGhTycRscIe~wl~~g-----~~tCP~trq--~-L~~~~ll~pN~~Lk~lIe~w~~ 713 (1122)
..+++|.||||+++|+|||+++ |||+|||.||++||..+ ..+||+|+. . +.... +.||..|+++|+.|+.
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~-L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD-LIQDEALRRAIENHNK 81 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG-EEECHHHHHHHHHHHT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh-CcCCHHHHHHHHHHHH
Confidence 3478999999999999999995 99999999999999863 469999544 4 88777 5999999999999998
Q ss_pred hcccc
Q 041480 714 ENCMH 718 (1122)
Q Consensus 714 ~n~~~ 718 (1122)
.+...
T Consensus 82 ~~~r~ 86 (94)
T 2yu4_A 82 KRHRH 86 (94)
T ss_dssp TCCSC
T ss_pred Hhccc
Confidence 76643
No 19
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.60 E-value=1e-14 Score=165.50 Aligned_cols=249 Identities=17% Similarity=0.122 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhc-----------CChhHHHHHHHHHHHHHcccC-ccchHHHH
Q 041480 784 EEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHS-----------KQVKPRTNTVLLLIDLICLSR-RRDVSTLL 851 (1122)
Q Consensus 784 Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~S-----------Gs~~aRenAv~aL~eLs~~~~-~k~~~~~L 851 (1122)
.++..|+.+|.+++. |+++|..|.+.|++++|+.+|.+ .+...|++|+.+|.+|+..+. ++. .+
T Consensus 47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~---~i 122 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA---TL 122 (354)
T ss_dssp GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH---HH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH---HH
Confidence 445578889999986 67999999999999999999953 135689999999999986543 321 11
Q ss_pred HhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccC-CChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHH
Q 041480 852 RNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLL-VEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALL 930 (1122)
Q Consensus 852 ~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll-~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~ 930 (1122)
.. .-|+|++|+.+|++++++.+..|+.+|.+|+.. .+.+|..|++.|+|++||.+|..... ...++.|+.||.
T Consensus 123 ---~~--~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~-~~~~~~A~~aL~ 196 (354)
T 3nmw_A 123 ---CS--MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK-ESTLKSVLSALW 196 (354)
T ss_dssp ---HH--CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred ---HH--cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 11 126799999999999999999999999999874 34689999999999999998654332 368999999999
Q ss_pred HhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHhcCCchhhHHHHHH
Q 041480 931 ILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRKRSFLETVSK 1010 (1122)
Q Consensus 931 ~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~~~L~aL~~ 1010 (1122)
+|+.+. .+ .+..+...+|..+.+..+
T Consensus 197 nLs~~~---~~--nk~~i~~~~Gai~~Lv~l------------------------------------------------- 222 (354)
T 3nmw_A 197 NLSAHC---TE--NKADICAVDGALAFLVGT------------------------------------------------- 222 (354)
T ss_dssp HHHTTC---HH--HHHHHHHSTTHHHHHHHH-------------------------------------------------
T ss_pred HHHccC---hh--hhHHHHHhcCcHHHHHHH-------------------------------------------------
Confidence 999631 11 233333344444544432
Q ss_pred hhccCCc----hhHHHHHHHHHHHHhhhcc---CCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhC-Ccc
Q 041480 1011 ILGSRNS----DLVSVCLTTVAWLSHALSA---QPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSK-IPE 1082 (1122)
Q Consensus 1011 ~l~s~~~----~l~~acL~t~aWl~~~L~~---~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~-~~~ 1082 (1122)
|.++.. ++...+ +|..+-|+. ..+...+.+...+.||+|+++|.++. .+-+.-|+.+|.|++. +++
T Consensus 223 -L~~~~~~~~~~v~~~A----~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~ 296 (354)
T 3nmw_A 223 -LTYRSQTNTLAIIESG----GGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPK 296 (354)
T ss_dssp -TTCCCSSSCCHHHHHH----HHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHH
T ss_pred -hccCCCcccHHHHHHH----HHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC-hHHHHHHHHHHHHHhCCCHH
Confidence 222211 122222 454555554 23334677777889999999999654 6688999999999995 688
Q ss_pred hhhhHHHHhhHhHHHhhhhccc
Q 041480 1083 CGAVLKTIAAEIRIPLQSLTEV 1104 (1122)
Q Consensus 1083 ~~~~L~~~a~gi~~~Lr~L~~~ 1104 (1122)
+++.+ ...|+...|.+|-..
T Consensus 297 ~~~~i--~~~G~i~~Lv~LL~s 316 (354)
T 3nmw_A 297 DQEAL--WDMGAVSMLKNLIHS 316 (354)
T ss_dssp HHHHH--HHTTHHHHHHTTTTC
T ss_pred HHHHH--HHCCCHHHHHHHHhC
Confidence 88887 778999999998643
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.59 E-value=3.5e-14 Score=165.74 Aligned_cols=320 Identities=15% Similarity=0.092 Sum_probs=229.3
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCC-HHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHH
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGK-LEEKARVAALMCCCIEADAGCRNQMARNINVYSLLEL 819 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs-~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~L 819 (1122)
.|+..|..+++... ..+...++..|++|.|+.+|...+ .+.+..|+.+|.+++..+.+++..+.+.|++++|+.+
T Consensus 93 ~A~~~L~~l~s~~~----~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 168 (528)
T 4b8j_A 93 EATTQFRKLLSIER----SPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168 (528)
T ss_dssp HHHHHHHHHHTCSS----SCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCC----CchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHH
Confidence 45667777765432 135667889999999999998876 8889999999999987667899999999999999999
Q ss_pred hhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHh-hcCCcchHHHHHHHHHhhccCCChhhhh
Q 041480 820 LHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYL-QRSPPEQRPLFSILLLHLDLLVEPRKYS 898 (1122)
Q Consensus 820 L~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lL-qsgs~~~k~lAA~aLlnLsll~EpnK~s 898 (1122)
|.+++...|+.|+.+|.+|+..... ... .+. ..|++++|+.++ ...++..+..|+.+|.+|+... +....
T Consensus 169 L~~~~~~v~~~a~~aL~~l~~~~~~--~~~---~i~---~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~ 239 (528)
T 4b8j_A 169 LGSSSDDVREQAVWALGNVAGDSPK--CRD---LVL---ANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSF 239 (528)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHTCHH--HHH---HHH---HTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCH
T ss_pred hcCCCHHHHHHHHHHHHHHhCCChh--hHH---HHH---HCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcH
Confidence 9999999999999999999854221 111 112 237899999999 5567788999999999998853 34455
Q ss_pred hhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCC
Q 041480 899 IYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPL 978 (1122)
Q Consensus 899 IvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~ 978 (1122)
....|+++.|+.+|..... .++..|+.+|.+|+.. .......+ -.+|+.+.+..+..+..+ . .
T Consensus 240 ~~~~~~l~~L~~lL~~~~~--~v~~~a~~aL~~l~~~-----~~~~~~~~-~~~g~v~~Lv~lL~~~~~---~------v 302 (528)
T 4b8j_A 240 EQTRPALPALARLIHSNDE--EVLTDACWALSYLSDG-----TNDKIQAV-IEAGVCPRLVELLLHPSP---S------V 302 (528)
T ss_dssp HHHTTHHHHHHHHTTCCCH--HHHHHHHHHHHHHTSS-----CHHHHHHH-HHTTCHHHHHHHTTCSCH---H------H
T ss_pred HHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHcC-----CHHHHHHH-HHcCHHHHHHHHHcCCCh---h------H
Confidence 6679999999999987653 6999999999999953 22222233 344665665543321100 0 0
Q ss_pred chhHHhHHHHHHH-------hHHHHhcCCchhhHHHHHHhhccC-CchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHh
Q 041480 979 DDEEQASEEWLRK-------LSASLLGNRKRSFLETVSKILGSR-NSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAV 1050 (1122)
Q Consensus 979 ~~ee~~~~~w~rk-------~a~~Lv~~G~~~~L~aL~~~l~s~-~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~l 1050 (1122)
-.. +-.-+.+ ....++..|. +..|...|.++ ...+...+ +|+..-|....+..++.....++
T Consensus 303 --~~~-a~~~L~nl~~~~~~~~~~~~~~~~---l~~L~~lL~~~~~~~v~~~A----~~~L~nl~~~~~~~~~~~~~~~~ 372 (528)
T 4b8j_A 303 --LIP-ALRTVGNIVTGDDAQTQCIIDHQA---LPCLLSLLTQNLKKSIKKEA----CWTISNITAGNKDQIQAVINAGI 372 (528)
T ss_dssp --HHH-HHHHHHHHTTSCHHHHHHHHTTTH---HHHHHHHHHSCCCHHHHHHH----HHHHHHHHTSCHHHHHHHHHTTC
T ss_pred --HHH-HHHHHHHHHcCCHHHHHHHHHhhh---HHHHHHHHcCCCcHHHHHHH----HHHHHHHHCCCHHHHHHHHHCCC
Confidence 011 1111122 2235566664 67777778888 88887776 56666666544444677777899
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHhhhhhCC--cchhhhHHHHhhHhHHHhhhhcc
Q 041480 1051 ISQLKEILQNGEQPQQKVLASMSLLNFSKI--PECGAVLKTIAAEIRIPLQSLTE 1103 (1122)
Q Consensus 1051 l~~Lv~~L~~~~~~eer~LA~~aL~~~~~~--~~~~~~L~~~a~gi~~~Lr~L~~ 1103 (1122)
+|.|+.+|+.+ +.+-|.-|+.+|.|++.+ ++.++.| ...|+.+.|-.|-.
T Consensus 373 i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l--~~~~~i~~L~~lL~ 424 (528)
T 4b8j_A 373 IGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYL--VSEGCIKPLCDLLI 424 (528)
T ss_dssp HHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHH--HHTTCHHHHHHGGG
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHH--HHCCCHHHHHHHHc
Confidence 99999999965 677899999999999986 5666655 35567777666543
No 21
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.58 E-value=7.6e-14 Score=144.89 Aligned_cols=243 Identities=14% Similarity=0.131 Sum_probs=193.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVS 848 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~ 848 (1122)
|+|+.|+.+|.+++.+.+..++..|.+++..+..++..+.+.|.++.|+.+|.+++...+..|+.+|.+|+..... ..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE--AI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH--HH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH--HH
Confidence 6899999999998999999999999999877767999999999999999999999999999999999999854221 11
Q ss_pred HHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHH
Q 041480 849 TLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRA 928 (1122)
Q Consensus 849 ~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~A 928 (1122)
. .+. ..|+++.|+.+++++++..+..|+.+|.+|+...+.++..+++.|+++.|+.+|.+... ..+..|+.+
T Consensus 80 ~---~~~---~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~--~~~~~a~~~ 151 (252)
T 4hxt_A 80 K---AIV---DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS--EVQKEAARA 151 (252)
T ss_dssp H---HHH---HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHH
T ss_pred H---HHH---HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHH
Confidence 1 122 24889999999999999999999999999997566788899999999999999997653 699999999
Q ss_pred HHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHhcCCchhhHHHH
Q 041480 929 LLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRKRSFLETV 1008 (1122)
Q Consensus 929 L~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~~~L~aL 1008 (1122)
|.+|+.. .+... ..++..|. +..|
T Consensus 152 L~~l~~~-----~~~~~------------------------------------------------~~~~~~~~---i~~L 175 (252)
T 4hxt_A 152 LANIASG-----PDEAI------------------------------------------------KAIVDAGG---VEVL 175 (252)
T ss_dssp HHHHTTS-----CHHHH------------------------------------------------HHHHHTTH---HHHH
T ss_pred HHHHHcC-----CHHHH------------------------------------------------HHHHHCcC---HHHH
Confidence 9999852 11000 13334443 5666
Q ss_pred HHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCCcc
Q 041480 1009 SKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIPE 1082 (1122)
Q Consensus 1009 ~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~~ 1082 (1122)
...+.+.++.+...+ +|....|....+...+.+...++++.|+++|+.+ +.+-|..|+.+|.|+...+.
T Consensus 176 ~~ll~~~~~~v~~~a----~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 176 VKLLTSTDSEVQKEA----ARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHTTCSCHHHHHHH----HHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHCCCCHHHHHHH----HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCCC
Confidence 667777777777777 4555555554444467788889999999999954 46889999999999998754
No 22
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.58 E-value=2.7e-14 Score=167.29 Aligned_cols=320 Identities=16% Similarity=0.119 Sum_probs=218.0
Q ss_pred HHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcC------------CCHHHHHHHHHHHHHhhhcchhhHHHHHhccc
Q 041480 745 ILEQLLTVFSDQERITNAKHLISIGGLQFLICRFES------------GKLEEKARVAALMCCCIEADAGCRNQMARNIN 812 (1122)
Q Consensus 745 ~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~s------------gs~Eek~~AaalL~~La~~D~snR~~Iae~Ga 812 (1122)
..++|++.... ...|..+++.|++|.||.+|.. ++.+.+..++.+|.+++....+......+.+.
T Consensus 49 ~~~~ll~~~~~---~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~ 125 (458)
T 3nmz_A 49 MSRTLLAMSSS---QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRV 125 (458)
T ss_dssp HHHHHHHHHSS---TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred HHHHHHHHHcC---CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHH
Confidence 45666654432 2355668899999999999985 34788999999999998776666666666666
Q ss_pred h----------HHHHHHhhcCC--hh-----HHH-------HHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHH
Q 041480 813 V----------YSLLELLHSKQ--VK-----PRT-------NTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLL 868 (1122)
Q Consensus 813 I----------~pLV~LL~SGs--~~-----aRe-------nAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~ 868 (1122)
+ +-++++|.+.. .. .++ +|+.+|.+|+...+++.. |. ..|++++|+.
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~------i~---~~G~l~~Lv~ 196 (458)
T 3nmz_A 126 LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHA------MN---ELGGLQAIAE 196 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHH------HH---HTTHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHH------HH---HCCCHHHHHH
Confidence 6 55667776542 11 344 999999999866555422 23 2589999999
Q ss_pred Hhhc-----------CCcchHHHHHHHHHhhccCCChhhhhhh-hhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCC
Q 041480 869 YLQR-----------SPPEQRPLFSILLLHLDLLVEPRKYSIY-REAAVDAITVALEESLTDEKIQEKCCRALLILGGRF 936 (1122)
Q Consensus 869 lLqs-----------gs~~~k~lAA~aLlnLsll~EpnK~sIv-ReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~f 936 (1122)
+|.. ..+..+..|+.+|.||+...+++|..+. ..|+|++||.+|.++.. .+|+.|+.||.+|+.+
T Consensus 197 LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~--~v~~~A~~aL~nLs~~- 273 (458)
T 3nmz_A 197 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE--DLQQVIASVLRNLSWR- 273 (458)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCH--HHHHHHHHHHHHHTSS-
T ss_pred HHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCH--HHHHHHHHHHHHHhcC-
Confidence 9852 2345688999999999986555777775 47889999999997653 6999999999999863
Q ss_pred CCCchhhhhhhhhcccccccccccc-CCCCCCCCCCCCCCCCCchhHHhHHHHH-----HHhHHHHh-cCCchhhHHHHH
Q 041480 937 SFSREVANESWILKPAGFNDRCEGN-SLDNDENDLPVDDSTPLDDEEQASEEWL-----RKLSASLL-GNRKRSFLETVS 1009 (1122)
Q Consensus 937 S~sGe~~~~~~LlK~AG~~~~~~~~-~~~~~~~d~~~d~~~~~~~ee~~~~~w~-----rk~a~~Lv-~~G~~~~L~aL~ 1009 (1122)
.+.-.+..+. ++|..+.+..+ +... . .. . -+..+.--|- ...-..++ ..|. +..|.
T Consensus 274 ---~~~~~k~~I~-~~GaI~~LV~lLl~s~-~--~~------v-~~~A~~aL~nLs~~~~~nk~~I~~~~Ga---l~~Lv 336 (458)
T 3nmz_A 274 ---ADVNSKKTLR-EVGSVKALMECALEVK-K--ES------T-LKSVLSALWNLSAHCTENKADICAVDGA---LAFLV 336 (458)
T ss_dssp ---CCHHHHHHHH-HTTHHHHHHHHHTTCC-S--HH------H-HHHHHHHHHHHHHHCHHHHHHHHHSTTH---HHHHH
T ss_pred ---CCHHHHHHHH-HcCCHHHHHHHHhcCC-C--HH------H-HHHHHHHHHHHccCCHHHHHHHHHhcCc---HHHHH
Confidence 1233455554 45555666553 2210 0 00 0 0111112221 11123444 6776 55666
Q ss_pred HhhccCCch----hHHHHHHHHHHHHhhhcc---CCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhC-Cc
Q 041480 1010 KILGSRNSD----LVSVCLTTVAWLSHALSA---QPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSK-IP 1081 (1122)
Q Consensus 1010 ~~l~s~~~~----l~~acL~t~aWl~~~L~~---~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~-~~ 1081 (1122)
+.|.++... +...+ +|..+-|+. ..+...+.+...+.||+|+++|.++. .+-+.-|+.+|.|++. ++
T Consensus 337 ~LL~~~~~~~~~~v~~~A----~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~~ 411 (458)
T 3nmz_A 337 GTLTYRSQTNTLAIIESG----GGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNP 411 (458)
T ss_dssp HHTTCCCSSSTTHHHHHH----HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSCH
T ss_pred HHhcCCCCcchHHHHHHH----HHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCH
Confidence 667766543 55544 677777765 34444777888899999999999654 6688999999999995 68
Q ss_pred chhhhHHHHhhHhHHHhhhhcc
Q 041480 1082 ECGAVLKTIAAEIRIPLQSLTE 1103 (1122)
Q Consensus 1082 ~~~~~L~~~a~gi~~~Lr~L~~ 1103 (1122)
++++.+ ...|+.+.|.+|-.
T Consensus 412 ~~~~~i--~~~G~I~~Lv~LL~ 431 (458)
T 3nmz_A 412 KDQEAL--WDMGAVSMLKNLIH 431 (458)
T ss_dssp HHHHHH--HHHTHHHHHHTTTT
T ss_pred HHHHHH--HHCCCHHHHHHHHh
Confidence 888877 67899999999864
No 23
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.56 E-value=5e-14 Score=174.50 Aligned_cols=324 Identities=13% Similarity=0.066 Sum_probs=222.7
Q ss_pred HHHHHHHHhhhhchhhhhhhhhHHHhhccH----HHHHHhhcCC--CHHHHHHHHHHHHHhhhcchhhHHHHH-hccchH
Q 041480 742 AIFILEQLLTVFSDQERITNAKHLISIGGL----QFLICRFESG--KLEEKARVAALMCCCIEADAGCRNQMA-RNINVY 814 (1122)
Q Consensus 742 Al~~LekLls~~~~ee~~~Nr~~IasaGaI----p~LV~LL~sg--s~Eek~~AaalL~~La~~D~snR~~Ia-e~GaI~ 814 (1122)
|+..|.++.+... ..+...+.+.|++ +.|+++|.+. +.+.+..++..|..++. +.+.|..|+ +.|+|+
T Consensus 350 Al~~L~kl~s~~~----~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip 424 (810)
T 3now_A 350 ALVGLCKLGSYGG----QDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIH 424 (810)
T ss_dssp HHHHHHHHHTTTT----TTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhccccc----cCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHH
Confidence 4445666543221 0122234445654 5567777766 78889999999999986 556777766 579999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHcccCcc---------------------------chHHHHHhhhhhhhhhhHHHHH
Q 041480 815 SLLELLHSKQVKPRTNTVLLLIDLICLSRRR---------------------------DVSTLLRNVQNEELVNAMHVLL 867 (1122)
Q Consensus 815 pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k---------------------------~~~~~L~~I~~eG~~gaI~~Ll 867 (1122)
+||.+|.+++...+..|+.+|.+|+...+.. .+......|.+ .|++++|+
T Consensus 425 ~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve---aGaVp~LV 501 (810)
T 3now_A 425 ALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN---EGITTALC 501 (810)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH---TTHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH---CcCHHHHH
Confidence 9999999999999999999999999743210 01111233443 38999999
Q ss_pred HHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhh
Q 041480 868 LYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESW 947 (1122)
Q Consensus 868 ~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~ 947 (1122)
.+|+++++..|..|+.+|.||+. .+++|..+++.|||++||.+|.+++. ..|+.|+.||.+|+.+ +.+-.. +
T Consensus 502 ~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~--~~k~~Aa~AL~nL~~~----~~p~~~-~ 573 (810)
T 3now_A 502 ALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTE--KGKRHATQALARIGIT----INPEVS-F 573 (810)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCH--HHHHHHHHHHHHHHHH----SCHHHH-T
T ss_pred HHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCH--HHHHHHHHHHHHHhcC----CChhhh-h
Confidence 99999999999999999999996 45699999999999999999998765 6899999999999852 222110 0
Q ss_pred h-hccccccccccccCCCCCCCCCCCCCCCCCchhHH-hHHHHHH-------HhHHHHhcCCchhhHHHHHHhhccCCch
Q 041480 948 I-LKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQ-ASEEWLR-------KLSASLLGNRKRSFLETVSKILGSRNSD 1018 (1122)
Q Consensus 948 L-lK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~-~~~~w~r-------k~a~~Lv~~G~~~~L~aL~~~l~s~~~~ 1018 (1122)
- ....|..+++..+.. .+. . .... .+-.-+. .....++..|+ +..|.++|.+++..
T Consensus 574 ~~~~~~~aIppLv~LL~-~~~-------~----~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~---l~~Lv~LL~s~~~~ 638 (810)
T 3now_A 574 SGQRSLDVIRPLLNLLQ-QDC-------T----ALENFESLMALTNLASMNESVRQRIIKEQG---VSKIEYYLMEDHLY 638 (810)
T ss_dssp TTHHHHHTHHHHHHTTS-TTS-------C----HHHHHHHHHHHHHHTTSCHHHHHHHHHTTH---HHHHHHHHHSCCTT
T ss_pred cchhhhcHHHHHHHHhC-CCC-------c----HHHHHHHHHHHHHHhcCCHHHHHHHHHcCC---HHHHHHHHcCCCHH
Confidence 0 011234465554322 110 0 0000 0111111 23346777776 67888889999999
Q ss_pred hHHHHHHHHHHHHhhhccCCCchhhHhhH-HHhHHHHHHhhcCCCChhhHHHHHHHhhhhhC-CcchhhhHHHHhhHhHH
Q 041480 1019 LVSVCLTTVAWLSHALSAQPDAEFQLSAF-SAVISQLKEILQNGEQPQQKVLASMSLLNFSK-IPECGAVLKTIAAEIRI 1096 (1122)
Q Consensus 1019 l~~acL~t~aWl~~~L~~~~~t~~~~~A~-~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~-~~~~~~~L~~~a~gi~~ 1096 (1122)
+.+++ +|+.+-|...++. ...... .+.++.|+.+|++. +.+-|.-|+.+|.|++. .++..+.+..- .|..+
T Consensus 639 Vq~~A----~~~L~NLa~~~~~-~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~-~g~I~ 711 (810)
T 3now_A 639 LTRAA----AQCLCNLVMSEDV-IKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAI-ASWLD 711 (810)
T ss_dssp HHHHH----HHHHHHHTTSHHH-HHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTS-TTHHH
T ss_pred HHHHH----HHHHHHHhCChHH-HHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHH-cCCHH
Confidence 99887 7777777776653 333332 46899999999964 57899999999999999 46655655222 56667
Q ss_pred Hhhhhcc
Q 041480 1097 PLQSLTE 1103 (1122)
Q Consensus 1097 ~Lr~L~~ 1103 (1122)
.|-+|-.
T Consensus 712 ~Lv~LL~ 718 (810)
T 3now_A 712 ILHTLIA 718 (810)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 7776643
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.56 E-value=3.8e-13 Score=156.95 Aligned_cols=333 Identities=11% Similarity=0.080 Sum_probs=234.8
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHH
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLEL 819 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~L 819 (1122)
..|+.+|..|.... ..++..++..|+|+.|+.+|.+.+.+.+..++.+|.+++..+..+|..+.+.|++++|+.+
T Consensus 136 ~~A~~~L~~l~~~~-----~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~l 210 (528)
T 4b8j_A 136 FEAAWALTNIASGT-----SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQ 210 (528)
T ss_dssp HHHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHhCCC-----HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHH
Confidence 34556666665432 3577888999999999999999899999999999999987777889999999999999999
Q ss_pred h-hcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhh
Q 041480 820 L-HSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYS 898 (1122)
Q Consensus 820 L-~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~s 898 (1122)
| .+.+...+.+|+.+|.+|+........ . -..|+++.|+.+|++.++..+..|+.+|.+|+...+.....
T Consensus 211 L~~~~~~~v~~~a~~~L~~L~~~~~~~~~-~--------~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 281 (528)
T 4b8j_A 211 LNEHTKLSMLRNATWTLSNFCRGKPQPSF-E--------QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQA 281 (528)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHCSSSCCCH-H--------HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCCCcH-H--------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9 567889999999999999866432211 0 12478999999999999999999999999998754444457
Q ss_pred hhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCC
Q 041480 899 IYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPL 978 (1122)
Q Consensus 899 IvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~ 978 (1122)
++..|+|+.|+.+|..... .++..|+.+|.+|+.. .......++. .|+.+.+..++.+...
T Consensus 282 ~~~~g~v~~Lv~lL~~~~~--~v~~~a~~~L~nl~~~-----~~~~~~~~~~-~~~l~~L~~lL~~~~~----------- 342 (528)
T 4b8j_A 282 VIEAGVCPRLVELLLHPSP--SVLIPALRTVGNIVTG-----DDAQTQCIID-HQALPCLLSLLTQNLK----------- 342 (528)
T ss_dssp HHHTTCHHHHHHHTTCSCH--HHHHHHHHHHHHHTTS-----CHHHHHHHHT-TTHHHHHHHHHHSCCC-----------
T ss_pred HHHcCHHHHHHHHHcCCCh--hHHHHHHHHHHHHHcC-----CHHHHHHHHH-hhhHHHHHHHHcCCCc-----------
Confidence 7889999999999987753 6999999999999963 3333334444 5555655443221100
Q ss_pred chhHHhHHHHH-HHhH-------HHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHh
Q 041480 979 DDEEQASEEWL-RKLS-------ASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAV 1050 (1122)
Q Consensus 979 ~~ee~~~~~w~-rk~a-------~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~l 1050 (1122)
..-...-.|. .+++ ..++..|. +..|...|.++...+...++.+++.++.. ..+...+.....++
T Consensus 343 -~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~---i~~L~~lL~~~~~~v~~~a~~aL~nl~~~---~~~~~~~~l~~~~~ 415 (528)
T 4b8j_A 343 -KSIKKEACWTISNITAGNKDQIQAVINAGI---IGPLVNLLQTAEFDIKKEAAWAISNATSG---GSHDQIKYLVSEGC 415 (528)
T ss_dssp -HHHHHHHHHHHHHHHTSCHHHHHHHHHTTC---HHHHHHHHHHSCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHCCC---HHHHHHHHhcCCHHHHHHHHHHHHHHHcC---CCHHHHHHHHHCCC
Confidence 0000111122 2222 35566665 66777778888988888885555544332 12233677777899
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHhhhhhCCcch------------hhhHHHHhhHhHHHhhhhccch----h-hHHHHHH
Q 041480 1051 ISQLKEILQNGEQPQQKVLASMSLLNFSKIPEC------------GAVLKTIAAEIRIPLQSLTEVT----W-TTQELCA 1113 (1122)
Q Consensus 1051 l~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~~~------------~~~L~~~a~gi~~~Lr~L~~~t----w-~A~el~~ 1113 (1122)
++.|+.+|+. .+.+-+..|..+|.+++...+. ...+ ...|..+.|..|..-. + .|..+++
T Consensus 416 i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~l~~L~~~~~~~v~~~a~~il~ 492 (528)
T 4b8j_A 416 IKPLCDLLIC-PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMI--DEAEGLEKIENLQSHDNNEIYEKAVKILE 492 (528)
T ss_dssp HHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHH--HHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHH--HHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999995 5567788899999999876543 2222 3335566666664321 2 5556655
Q ss_pred HH
Q 041480 1114 II 1115 (1122)
Q Consensus 1114 ~~ 1115 (1122)
.+
T Consensus 493 ~~ 494 (528)
T 4b8j_A 493 AY 494 (528)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.53 E-value=1.4e-12 Score=150.63 Aligned_cols=319 Identities=15% Similarity=0.102 Sum_probs=223.0
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHh-hccHHHHHHhhcCC-CHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHH
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLIS-IGGLQFLICRFESG-KLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLE 818 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~Ias-aGaIp~LV~LL~sg-s~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~ 818 (1122)
.|+..|..|... ..++..++. .|+++.|+++|..+ +.+.+..++..|.+++. +.+++..|.+.|++++|+.
T Consensus 36 ~A~~~L~~l~~~------~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~L~~ 108 (529)
T 1jdh_A 36 KAAVMVHQLSKK------EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVK 108 (529)
T ss_dssp HHHHHHHHHHTS------HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHcC------CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhHHHHHHcCCHHHHHH
Confidence 344455555432 135656665 49999999999765 78889999999999887 4569999999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhh
Q 041480 819 LLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYS 898 (1122)
Q Consensus 819 LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~s 898 (1122)
+|.+++...+..|+.+|.+|+..+.+. . ..+. ..|+++.|+.+++++++..+..++.+|.+|+...+.++..
T Consensus 109 lL~~~~~~v~~~a~~~L~~l~~~~~~~--~---~~i~---~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~ 180 (529)
T 1jdh_A 109 MLGSPVDSVLFYAITTLHNLLLHQEGA--K---MAVR---LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHCTTH--H---HHHH---HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCcch--H---HHHH---HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999998764432 1 1122 2489999999999988888888989999999866678999
Q ss_pred hhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCC
Q 041480 899 IYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPL 978 (1122)
Q Consensus 899 IvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~ 978 (1122)
+++.|+++.|+.+|+.+.. +..+..+..+|.+|+.+ +..+..+++ .|+.+.+..+..+ ..
T Consensus 181 i~~~~~i~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~------~~~~~~~~~-~g~~~~L~~ll~~---------~~--- 240 (529)
T 1jdh_A 181 ILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVC------SSNKPAIVE-AGGMQALGLHLTD---------PS--- 240 (529)
T ss_dssp HHHTTHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTS------TTHHHHHHH-TTHHHHHHTTTTS---------SC---
T ss_pred HHHCCCHHHHHHHHHhCCh-HHHHHHHHHHHHHHhcC------cccHHHHHH-CCCHHHHHHHHhC---------CC---
Confidence 9999999999999998765 46788899999999953 123455544 4554655443221 00
Q ss_pred chhHHhHHHHH-HHhHHHHh-cCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHH
Q 041480 979 DDEEQASEEWL-RKLSASLL-GNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKE 1056 (1122)
Q Consensus 979 ~~ee~~~~~w~-rk~a~~Lv-~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~ 1056 (1122)
.+-...-.|. .+++..-- ..+...++..|.+.+.+.++++...+ +|....|....+...+.+...+.++.|++
T Consensus 241 -~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a----~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ 315 (529)
T 1jdh_A 241 -QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCA----AGILSNLTCNNYKNKMMVCQVGGIEALVR 315 (529)
T ss_dssp -HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHH----HHHHHHHTTTCHHHHHHHHHTTHHHHHHH
T ss_pred -hHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHH----HHHHHHHhcCCHHHHHHHHHcCChHHHHH
Confidence 0100011121 22211000 01122467888998999999988776 66666776655445677778889999999
Q ss_pred hhcCC-CChhhHHHHHHHhhhhhCC-cc---hhhhHHHHhhHhHHHhhhh
Q 041480 1057 ILQNG-EQPQQKVLASMSLLNFSKI-PE---CGAVLKTIAAEIRIPLQSL 1101 (1122)
Q Consensus 1057 ~L~~~-~~~eer~LA~~aL~~~~~~-~~---~~~~L~~~a~gi~~~Lr~L 1101 (1122)
+|... ...+-+.-|+.+|.|++.+ ++ .+..+ ...|..+.|-++
T Consensus 316 ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i--~~~~~i~~L~~l 363 (529)
T 1jdh_A 316 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV--RLHYGLPVVVKL 363 (529)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHH--HHTTCHHHHHHT
T ss_pred HHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHH--HHcCChhHHHHH
Confidence 99853 3356778899999999886 33 23333 333445555444
No 26
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.53 E-value=2.7e-14 Score=153.66 Aligned_cols=177 Identities=16% Similarity=0.120 Sum_probs=143.6
Q ss_pred ccHHHHHHhhcCCCH--HHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcc-cCcc
Q 041480 769 GGLQFLICRFESGKL--EEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICL-SRRR 845 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~--Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~-~~~k 845 (1122)
-.+|.||.+|.+++. +.+..++..|.+++..++.+|..|.+.|+||+||++|.+++...|+.|+.+|.+|+.. ++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 358999999998887 6777788888888777888999999999999999999999999999999999999974 3444
Q ss_pred chHHHHHhhhhhhhhhhHHHHHHHhhc-CCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHh---ccC-----
Q 041480 846 DVSTLLRNVQNEELVNAMHVLLLYLQR-SPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALE---ESL----- 916 (1122)
Q Consensus 846 ~~~~~L~~I~~eG~~gaI~~Ll~lLqs-gs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~---~g~----- 916 (1122)
.. |. ..|+|++|+.+|++ ++.+.+..|+++|++|+.. +.+|..|+++ +|++|+.+|. +|.
T Consensus 88 ~~------I~---~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~ 156 (233)
T 3tt9_A 88 LE------VA---ELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITE-ALLTLTENIIIPFSGWPEGDY 156 (233)
T ss_dssp HH------HH---HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGC
T ss_pred HH------HH---HcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHhc-cHHHHHHHHhccccCCccccc
Confidence 22 23 24899999999984 6889999999999999985 6699999875 6999998763 232
Q ss_pred ------CChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhcccccccccccc
Q 041480 917 ------TDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGN 961 (1122)
Q Consensus 917 ------~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~ 961 (1122)
.+..++++|+.+|.+|+. +....|..+....|+++.+..+
T Consensus 157 ~~~~~~~~~~v~~na~~~L~nLss-----~~~~~R~~~r~~~Gli~~Lv~~ 202 (233)
T 3tt9_A 157 PKANGLLDFDIFYNVTGCLRNMSS-----AGADGRKAMRRCDGLIDSLVHY 202 (233)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHTT-----SCHHHHHHHHTSTTHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhc-----CCHHHHHHHHHCCCcHHHHHHH
Confidence 234799999999999985 2344677777778887766543
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.52 E-value=3.1e-12 Score=144.31 Aligned_cols=302 Identities=12% Similarity=0.055 Sum_probs=214.8
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHh
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELL 820 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL 820 (1122)
.++..|..+.... ..+...++..|+++.|+.+|.+.+.+.+..++.+|.+++..+..+|..+.+.|.+++|+.+|
T Consensus 84 ~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l 158 (450)
T 2jdq_A 84 ESAWVLTNIASGN-----SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLF 158 (450)
T ss_dssp HHHHHHHHHHSSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHhcCC-----HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh
Confidence 3445555555321 23556677889999999999999999999999999999887778899999999999999999
Q ss_pred hc-CChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhh
Q 041480 821 HS-KQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSI 899 (1122)
Q Consensus 821 ~S-Gs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sI 899 (1122)
.. .+...|..|+.+|.+|+......... .-..++++.|+.+++.+++..+..++.+|.+|+....+++..+
T Consensus 159 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~--------~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 230 (450)
T 2jdq_A 159 SKQNRLTMTRNAVWALSNLCRGKSPPPEF--------AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAV 230 (450)
T ss_dssp TSCCCHHHHHHHHHHHHHHHCCSSSCCCG--------GGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCCCCCH--------HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 85 68899999999999998654111000 0124789999999999888889999999999988555577778
Q ss_pred hhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCc
Q 041480 900 YREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLD 979 (1122)
Q Consensus 900 vReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~ 979 (1122)
+..|+++.|+.+|.... ..++..|+.+|.+|+.. .......++. .|+.+.+..+..+.++ .
T Consensus 231 ~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~-----~~~~~~~~~~-~~~l~~L~~ll~~~~~---~-------- 291 (450)
T 2jdq_A 231 IDAGVCRRLVELLMHND--YKVVSPALRAVGNIVTG-----DDIQTQVILN-CSALQSLLHLLSSPKE---S-------- 291 (450)
T ss_dssp HHTTTHHHHHHHTTCSC--HHHHHHHHHHHHHHTTS-----CHHHHHHHHT-TTHHHHHHHHTTCSSH---H--------
T ss_pred HHcCcHHHHHHHHCCCc--hhHHHHHHHHHHHHhhC-----ChHHHHHHHH-CccHHHHHHHHcCCCH---H--------
Confidence 88999999999998654 36999999999999863 2222333433 3555655443221100 0
Q ss_pred hhHHhHHHHHHHhH-------HHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccC-CCchhhHhhHHHhH
Q 041480 980 DEEQASEEWLRKLS-------ASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQ-PDAEFQLSAFSAVI 1051 (1122)
Q Consensus 980 ~ee~~~~~w~rk~a-------~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~-~~t~~~~~A~~~ll 1051 (1122)
--..+-.-+.+++ ..++..| ++..|...+.++++++...+..++. -|... .+..++.....+++
T Consensus 292 -vr~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~~l~~~~~~v~~~a~~~L~----~l~~~~~~~~~~~l~~~~~i 363 (450)
T 2jdq_A 292 -IKKEACWTISNITAGNRAQIQTVIDAN---IFPALISILQTAEFRTRKEAAWAIT----NATSGGSAEQIKYLVELGCI 363 (450)
T ss_dssp -HHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHHHHHHHSCHHHHHHHHHHHH----HHHHHCCHHHHHHHHHHTCH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHHHHHHhcCCHHHHHHHHHHHH----HHHcCCCHHHHHHHHHCCCH
Confidence 0000111112222 2455555 4677778888999999888754444 44332 22346767778999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHhhhhhCCcch
Q 041480 1052 SQLKEILQNGEQPQQKVLASMSLLNFSKIPEC 1083 (1122)
Q Consensus 1052 ~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~~~ 1083 (1122)
|.|+++|+.. +.+-|..|+.+|.+|+...+.
T Consensus 364 ~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~ 394 (450)
T 2jdq_A 364 KPLCDLLTVM-DSKIVQVALNGLENILRLGEQ 394 (450)
T ss_dssp HHHHHGGGSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHHhchh
Confidence 9999999954 567788899999999986543
No 28
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.52 E-value=1.1e-12 Score=154.56 Aligned_cols=284 Identities=13% Similarity=0.075 Sum_probs=204.1
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHH
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFES-GKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLEL 819 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~s-gs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~L 819 (1122)
.++..+++|++.-. ......|+..|+||.||.+|.. .+.+.+..|+.+|.+++..+..++..|++.|+|++|+.+
T Consensus 95 ~a~~~~rklLs~~~----~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~L 170 (529)
T 3tpo_A 95 QATQAARKLLSREK----QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL 170 (529)
T ss_dssp HHHHHHHHHHTSSS----CCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCC----CchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 45667788775321 1234568899999999999974 568889999999999988777788899999999999999
Q ss_pred hhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcc-----hHHHHHHHHHhhccCCCh
Q 041480 820 LHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPE-----QRPLFSILLLHLDLLVEP 894 (1122)
Q Consensus 820 L~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~-----~k~lAA~aLlnLsll~Ep 894 (1122)
|.+++...++.|+.+|.+|+..... ... .|. ..|++++|+.+|+..... ....++.+|.+|+....+
T Consensus 171 L~s~~~~v~e~A~~aL~nLa~~~~~--~r~---~i~---~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~ 242 (529)
T 3tpo_A 171 LASPHAHISEQAVWALGNIAGAGSA--FRD---LVI---KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP 242 (529)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTCHH--HHH---HHH---HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTT
T ss_pred HcCCCHHHHHHHHHHHHHHhccCHH--HHH---HHH---HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999865321 111 122 248999999999865432 355688889999886554
Q ss_pred hhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCC
Q 041480 895 RKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDD 974 (1122)
Q Consensus 895 nK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~ 974 (1122)
......-.|++++|+.+|.+... .++..|+.||.+|+.. .....
T Consensus 243 ~~~~~~~~~~lp~L~~LL~~~~~--~v~~~a~~aL~~l~~~-----~~~~~----------------------------- 286 (529)
T 3tpo_A 243 APPLDAVEQILPTLVRLLHHNDP--EVLADSCWAISYLTDG-----PNERI----------------------------- 286 (529)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSCH--HHHHHHHHHHHHHHSS-----CHHHH-----------------------------
T ss_pred hhhHHHHhhHHHHHHHHhcCCcH--HHHHHHHHHHHHhhhh-----hhhhH-----------------------------
Confidence 44445558899999999987654 6899999999998852 11000
Q ss_pred CCCCchhHHhHHHHHHHhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHH
Q 041480 975 STPLDDEEQASEEWLRKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQL 1054 (1122)
Q Consensus 975 ~~~~~~ee~~~~~w~rk~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~L 1054 (1122)
..++..|. +..|.+.|.+.+..+...|+.++. -|....+...+.+...+.++.|
T Consensus 287 -------------------~~v~~~g~---i~~Lv~lL~~~~~~v~~~a~~aL~----nl~~~~~~~~~~i~~~g~l~~L 340 (529)
T 3tpo_A 287 -------------------EMVVKKGV---VPQLVKLLGATELPIVTPALRAIG----NIVTGTDEQTQKVIDAGALAVF 340 (529)
T ss_dssp -------------------HHHHTTTC---HHHHHHHHTCSCHHHHHHHHHHHH----HHTTSCHHHHHHHHHTTGGGGH
T ss_pred -------------------HHHHhccc---hHHHHHHhcCCChhHHHHHHHHHH----HHHccchHHHHHHhhcccHHHH
Confidence 12333443 455556677777777777754433 3334444345667778899999
Q ss_pred HHhhcCCCChhhHHHHHHHhhhhhCCc-chhhhHHHHhhHhHHHhhhh
Q 041480 1055 KEILQNGEQPQQKVLASMSLLNFSKIP-ECGAVLKTIAAEIRIPLQSL 1101 (1122)
Q Consensus 1055 v~~L~~~~~~eer~LA~~aL~~~~~~~-~~~~~L~~~a~gi~~~Lr~L 1101 (1122)
+.+|.+.+ .+-|.-|+.+|.|++.+. ...+.+ .+.|+...|-.+
T Consensus 341 ~~LL~~~~-~~i~~~a~~aL~nl~~~~~~~~~~v--~~~g~i~~Lv~l 385 (529)
T 3tpo_A 341 PSLLTNPK-TNIQKEATWTMSNITAGRQDQIQQV--VNHGLVPFLVGV 385 (529)
T ss_dssp HHHTTCSS-HHHHHHHHHHHHHHHTSCHHHHHHH--HHTTHHHHHHHH
T ss_pred HHHHcCCC-HHHHHHHHHHHHHHhcccHHHHHHH--HhcCcHHHHHHH
Confidence 99999554 678899999999999874 444444 456666666544
No 29
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.52 E-value=2.5e-13 Score=138.80 Aligned_cols=180 Identities=14% Similarity=0.088 Sum_probs=151.4
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHH
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLEL 819 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~L 819 (1122)
..++..|..|.... ..++..++..|+++.|+.+|.+++.+.+..++.+|.+++..++.++..|.+.|+++.|+.+
T Consensus 30 ~~a~~~L~~l~~~~-----~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 104 (210)
T 4db6_A 30 QSALRKLSQIASGG-----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104 (210)
T ss_dssp HHHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCC-----HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHH
Confidence 34556666665332 3477889999999999999999999999999999999987778899999999999999999
Q ss_pred hhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhh
Q 041480 820 LHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSI 899 (1122)
Q Consensus 820 L~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sI 899 (1122)
|.+++...+..|+.+|.+|+...... ...+.+ .|+++.|+.+++++++..+..|+.+|.+|+...+.++..+
T Consensus 105 L~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~---~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 176 (210)
T 4db6_A 105 LSSPNEQILQEALWALSNIASGGNEQ-----IQAVID---AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 176 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHH-----HHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHcCCHHH-----HHHHHH---cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999998533211 112222 4899999999999999999999999999998656788889
Q ss_pred hhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhc
Q 041480 900 YREAAVDAITVALEESLTDEKIQEKCCRALLILGG 934 (1122)
Q Consensus 900 vReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag 934 (1122)
.+.|+++.|+.+|.++.. .+|+.|+.+|.+|+.
T Consensus 177 ~~~g~i~~L~~ll~~~~~--~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 177 KEAGALEKLEQLQSHENE--KIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTTHHHHHHHGGGCSCH--HHHHHHHHHHHHHCC
T ss_pred HHCCCHHHHHHHHhCCCH--HHHHHHHHHHHHHhc
Confidence 999999999999997654 699999999999985
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.51 E-value=4e-12 Score=148.82 Aligned_cols=324 Identities=12% Similarity=0.039 Sum_probs=227.8
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHh
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELL 820 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL 820 (1122)
.|+.+|..|.... ..++..++..|+++.|+.+|.+.+.+.+..|+.+|.+++..+..++..+...|.+++|+.+|
T Consensus 150 ~A~~~L~~l~~~~-----~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll 224 (530)
T 1wa5_B 150 EAAWALTNIASGT-----SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF 224 (530)
T ss_dssp HHHHHHHHHTTSC-----HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHhCCC-----HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh
Confidence 4555666665432 23567788899999999999989999999999999999876678999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHHHccc-CccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhh
Q 041480 821 HSKQVKPRTNTVLLLIDLICLS-RRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSI 899 (1122)
Q Consensus 821 ~SGs~~aRenAv~aL~eLs~~~-~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sI 899 (1122)
...+...+.+|+.+|.+|+... ..... . . ..++++.|+.+|.+..+..+..|+.+|.+|+...+.....+
T Consensus 225 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~---~---~---~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~ 295 (530)
T 1wa5_B 225 NSNKPSLIRTATWTLSNLCRGKKPQPDW---S---V---VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAV 295 (530)
T ss_dssp GSCCHHHHHHHHHHHHHHHCCSSSCCCH---H---H---HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCCcH---H---H---HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9988999999999999998654 22211 0 1 24789999999999888899999999999987545566778
Q ss_pred hhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCc
Q 041480 900 YREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLD 979 (1122)
Q Consensus 900 vReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~ 979 (1122)
+..|+++.|+.+|.... ..++..|+.+|.+|+.. .......++ ..|+.+.+..++.+..+
T Consensus 296 ~~~~~v~~Lv~lL~~~~--~~v~~~a~~~L~~l~~~-----~~~~~~~~~-~~~~l~~L~~lL~~~~~------------ 355 (530)
T 1wa5_B 296 IDVRIPKRLVELLSHES--TLVQTPALRAVGNIVTG-----NDLQTQVVI-NAGVLPALRLLLSSPKE------------ 355 (530)
T ss_dssp HHTTCHHHHHHGGGCSC--HHHHHHHHHHHHHHTTS-----CHHHHHHHH-HTTHHHHHHHHTTCSCH------------
T ss_pred HhcCcHHHHHHHHCCCC--hhhHHHHHHHHHHHHcC-----CHHHHHHHH-HcchHHHHHHHHcCCCH------------
Confidence 88999999999998654 36999999999999853 222223333 34555655443321100
Q ss_pred hhHHhHHHHH-HHh-------HHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhH
Q 041480 980 DEEQASEEWL-RKL-------SASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVI 1051 (1122)
Q Consensus 980 ~ee~~~~~w~-rk~-------a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll 1051 (1122)
+-...-.|. .++ ...++..|. +..|...|.+++.++...++.++..|...-...+ ...+.....+++
T Consensus 356 -~vr~~A~~aL~~l~~~~~~~~~~~~~~~~---l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~~~l~~~~~l 430 (530)
T 1wa5_B 356 -NIKKEACWTISNITAGNTEQIQAVIDANL---IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP-DIIRYLVSQGCI 430 (530)
T ss_dssp -HHHHHHHHHHHHHTTSCHHHHHHHHHTTC---HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCT-HHHHHHHHTTCH
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHCCC---HHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHCCCH
Confidence 101111122 222 234556665 6677777888999998888655554443311111 235666678899
Q ss_pred HHHHHhhcCCCChhhHHHHHHHhhhhhCCcchhhh---------H-HHHhhHhHHHhhhhccc
Q 041480 1052 SQLKEILQNGEQPQQKVLASMSLLNFSKIPECGAV---------L-KTIAAEIRIPLQSLTEV 1104 (1122)
Q Consensus 1052 ~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~~~~~~---------L-~~~a~gi~~~Lr~L~~~ 1104 (1122)
|.|+.+|... +-+-+..|+-+|.+|+...+.... . .-...|..+.|..|..-
T Consensus 431 ~~L~~ll~~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~ 492 (530)
T 1wa5_B 431 KPLCDLLEIA-DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN 492 (530)
T ss_dssp HHHHHHTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGC
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcC
Confidence 9999999954 567788899999999886443211 1 11344667777777643
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.51 E-value=9.4e-13 Score=154.14 Aligned_cols=321 Identities=14% Similarity=0.092 Sum_probs=227.5
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHH
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESG-KLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLEL 819 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sg-s~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~L 819 (1122)
.|+..|.+++.... ..+...++..|++|.|+.+|... +.+.+..++.+|.+++..+..++..+.+.|++++|+.+
T Consensus 106 ~A~~~L~~ll~~~~----~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 181 (530)
T 1wa5_B 106 SATVKFRQILSREH----RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQL 181 (530)
T ss_dssp HHHHHHHHHTCCSS----SCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCC----CccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHH
Confidence 45666777765321 13456788899999999999986 78889999999999987667788889999999999999
Q ss_pred hhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhh
Q 041480 820 LHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSI 899 (1122)
Q Consensus 820 L~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sI 899 (1122)
|.+.+...|+.|+.+|.+|+..... ... .+. ..|++++|+.+++..++..+..|+.+|.+|+....+.....
T Consensus 182 L~~~~~~vr~~A~~aL~~l~~~~~~--~~~---~~~---~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 253 (530)
T 1wa5_B 182 LYTGSVEVKEQAIWALGNVAGDSTD--YRD---YVL---QCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 253 (530)
T ss_dssp HHHCCHHHHHHHHHHHHHHHTTCHH--HHH---HHH---HTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCcc--chH---HHH---HcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHH
Confidence 9999999999999999999854221 111 112 24889999999998888889999999999997543455566
Q ss_pred hhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCc
Q 041480 900 YREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLD 979 (1122)
Q Consensus 900 vReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~ 979 (1122)
...|+++.|+.+|.... ..++..|+.+|.+|+.. .+.....++ ..|+.+.+..++.+.++ . .
T Consensus 254 ~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~-----~~~~~~~~~-~~~~v~~Lv~lL~~~~~---~------v- 315 (530)
T 1wa5_B 254 VVSQALPTLAKLIYSMD--TETLVDACWAISYLSDG-----PQEAIQAVI-DVRIPKRLVELLSHEST---L------V- 315 (530)
T ss_dssp HHGGGHHHHHHHTTCCC--HHHHHHHHHHHHHHHSS-----CHHHHHHHH-HTTCHHHHHHGGGCSCH---H------H-
T ss_pred HHHhHHHHHHHHHcCCC--HHHHHHHHHHHHHHhCC-----CHHHHHHHH-hcCcHHHHHHHHCCCCh---h------h-
Confidence 77899999999998764 36999999999999953 222233333 34555655443321100 0 0
Q ss_pred hhHHhHHHHHHH-------hHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHH
Q 041480 980 DEEQASEEWLRK-------LSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVIS 1052 (1122)
Q Consensus 980 ~ee~~~~~w~rk-------~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~ 1052 (1122)
-+.+. .-+.+ ....++..| ++..|...|.+....+...+ +|....|....+..++.+...+++|
T Consensus 316 -~~~a~-~~L~~l~~~~~~~~~~~~~~~---~l~~L~~lL~~~~~~vr~~A----~~aL~~l~~~~~~~~~~~~~~~~l~ 386 (530)
T 1wa5_B 316 -QTPAL-RAVGNIVTGNDLQTQVVINAG---VLPALRLLLSSPKENIKKEA----CWTISNITAGNTEQIQAVIDANLIP 386 (530)
T ss_dssp -HHHHH-HHHHHHTTSCHHHHHHHHHTT---HHHHHHHHTTCSCHHHHHHH----HHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred -HHHHH-HHHHHHHcCCHHHHHHHHHcc---hHHHHHHHHcCCCHHHHHHH----HHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 01111 11111 223445555 47788888999988888777 5666666654443456666778999
Q ss_pred HHHHhhcCCCChhhHHHHHHHhhhhhCC--c--chhhhHHHHhhHhHHHhhhhcc
Q 041480 1053 QLKEILQNGEQPQQKVLASMSLLNFSKI--P--ECGAVLKTIAAEIRIPLQSLTE 1103 (1122)
Q Consensus 1053 ~Lv~~L~~~~~~eer~LA~~aL~~~~~~--~--~~~~~L~~~a~gi~~~Lr~L~~ 1103 (1122)
.|+.+|+. .+.+-|..|+.+|.+|+.+ + +..+.+ ...|+.+.|-.|-.
T Consensus 387 ~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l--~~~~~l~~L~~ll~ 438 (530)
T 1wa5_B 387 PLVKLLEV-AEYKTKKEACWAISNASSGGLQRPDIIRYL--VSQGCIKPLCDLLE 438 (530)
T ss_dssp HHHHHHHH-SCHHHHHHHHHHHHHHHHHTTTCTHHHHHH--HHTTCHHHHHHHTT
T ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHHhcCCCcHHHHHHH--HHCCCHHHHHHHHh
Confidence 99999984 4567899999999999875 3 454555 34566666666543
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.51 E-value=2.5e-12 Score=154.88 Aligned_cols=300 Identities=15% Similarity=0.104 Sum_probs=214.9
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHhh-ccHHHHHHhhcCC-CHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHH
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLISI-GGLQFLICRFESG-KLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLE 818 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~Iasa-GaIp~LV~LL~sg-s~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~ 818 (1122)
.++..|..|.... .++..++.. |+++.|+++|..+ +.+.+..++..|.+++.. .+++..|.+.|+++.|+.
T Consensus 33 ~A~~~L~~La~~~------~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~ 105 (644)
T 2z6h_A 33 KAAVMVHQLSKKE------ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVK 105 (644)
T ss_dssp HHHHHHHHHHTST------THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHCCC------hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHH
Confidence 3455566555321 356666654 8999999999865 788899999999988874 469999999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhh
Q 041480 819 LLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYS 898 (1122)
Q Consensus 819 LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~s 898 (1122)
+|.+++...+..|+.+|.+|+...... . ..+.+ .|+|+.|+.+|+++.+..+..++.+|.+|+...+.+|..
T Consensus 106 lL~~~~~~v~~~A~~aL~nL~~~~~~~--~---~~v~~---~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~ 177 (644)
T 2z6h_A 106 MLGSPVDSVLFYAITTLHNLLLHQEGA--K---MAVRL---AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 177 (644)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSTTH--H---HHHHH---TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHhCcchh--H---HHHHH---CCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 999999999999999999998765322 1 11222 489999999999988777777888999999866678999
Q ss_pred hhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCC
Q 041480 899 IYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPL 978 (1122)
Q Consensus 899 IvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~ 978 (1122)
+++.|+|+.|+.+|+.... +..++.|+.+|.+|+.+ +..+..+++ +|+.+.+..+..+ ..
T Consensus 178 i~~~g~v~~Lv~lL~~~~~-~~~~~~a~~~L~nLs~~------~~~~~~l~~-~g~l~~L~~ll~~---------~~--- 237 (644)
T 2z6h_A 178 ILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVC------SSNKPAIVE-AGGMQALGLHLTD---------PS--- 237 (644)
T ss_dssp HHHTTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHTTC------TTHHHHHHH-TTHHHHHHTTTTC---------SC---
T ss_pred HHHcCChHHHHHHHHcCCh-HHHHHHHHHHHHHHhcC------cccHHHHHH-CCCHHHHHHHHhc---------CC---
Confidence 9999999999999998764 46889999999999953 123555545 4554555442221 00
Q ss_pred chhHHhHHHHH-HHhHHHHh-cCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHH
Q 041480 979 DDEEQASEEWL-RKLSASLL-GNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKE 1056 (1122)
Q Consensus 979 ~~ee~~~~~w~-rk~a~~Lv-~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~ 1056 (1122)
.+-...-.|. .+++..-- ..+...++..|...|.+.+.++...+ +|....|...++...+.+...+.++.|++
T Consensus 238 -~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a----~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~ 312 (644)
T 2z6h_A 238 -QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCA----AGILSNLTCNNYKNKMMVCQVGGIEALVR 312 (644)
T ss_dssp -HHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHH----HHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHH----HHHHHHHHcCCHHHHHHHHHcCCHHHHHH
Confidence 0101111111 22211000 01123578889999999998887666 67777776655544677777889999999
Q ss_pred hhcCCCC-hhhHHHHHHHhhhhhCC
Q 041480 1057 ILQNGEQ-PQQKVLASMSLLNFSKI 1080 (1122)
Q Consensus 1057 ~L~~~~~-~eer~LA~~aL~~~~~~ 1080 (1122)
+|..... .+-+.-|+.+|.|++.+
T Consensus 313 lL~~~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 313 TVLRAGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHccCCcHHHHHHHHHHHHHHhcC
Confidence 9985332 56788899999999875
No 33
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.51 E-value=3.2e-13 Score=155.93 Aligned_cols=282 Identities=13% Similarity=0.102 Sum_probs=202.6
Q ss_pred HhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHh-ccchHHHHHHhhcC-ChhHHHHHHHHHHHHHcccC
Q 041480 766 ISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMAR-NINVYSLLELLHSK-QVKPRTNTVLLLIDLICLSR 843 (1122)
Q Consensus 766 asaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae-~GaI~pLV~LL~SG-s~~aRenAv~aL~eLs~~~~ 843 (1122)
...|+++.|+.+|...+.+.+..++..|.+++. +++++..+.. .|.+++|+.+|.++ +...+..|+.+|.+|+..+.
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch
Confidence 456999999999999999999999999999986 4467777765 48999999999865 78899999999999986544
Q ss_pred ccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHH
Q 041480 844 RRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQE 923 (1122)
Q Consensus 844 ~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe 923 (1122)
++ ..|. ..|+|+.|+.+|+++++..+..|+.+|.+|+...+..+..+.+.|+|+.|+.+|.++.. ..+.
T Consensus 93 ~~------~~i~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~--~~~~ 161 (529)
T 1jdh_A 93 GL------LAIF---KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--KFLA 161 (529)
T ss_dssp HH------HHHH---HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCH--HHHH
T ss_pred hH------HHHH---HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCH--HHHH
Confidence 32 1122 34899999999999999999999999999998655678888899999999999987543 6889
Q ss_pred HHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHh------HHHHh
Q 041480 924 KCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKL------SASLL 997 (1122)
Q Consensus 924 ~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~------a~~Lv 997 (1122)
.++.+|.+|+. |.+..+..+...+|+ +.+..++.+. . . +.--.++-..+.++ ...++
T Consensus 162 ~~~~~L~~la~-----~~~~~~~~i~~~~~i-~~L~~ll~~~-~------~----~~~~~~a~~~L~~l~~~~~~~~~~~ 224 (529)
T 1jdh_A 162 ITTDCLQILAY-----GNQESKLIILASGGP-QALVNIMRTY-T------Y----EKLLWTTSRVLKVLSVCSSNKPAIV 224 (529)
T ss_dssp HHHHHHHHHHT-----TCHHHHHHHHHTTHH-HHHHHHHHHC-C------C----HHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred HHHHHHHHHHh-----CCHHHHHHHHHCCCH-HHHHHHHHhC-C------h----HHHHHHHHHHHHHHhcCcccHHHHH
Confidence 99999999985 233344455455444 4443322111 0 0 00000111111121 24566
Q ss_pred cCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhh
Q 041480 998 GNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNF 1077 (1122)
Q Consensus 998 ~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~ 1077 (1122)
..|. +..|.+.+.+++.++...| +|....|+..++. . .+...++|.|+++|+ ..+.+-|..|+.+|.++
T Consensus 225 ~~g~---~~~L~~ll~~~~~~~~~~a----~~~L~~l~~~~~~-~--~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L 293 (529)
T 1jdh_A 225 EAGG---MQALGLHLTDPSQRLVQNC----LWTLRNLSDAATK-Q--EGMEGLLGTLVQLLG-SDDINVVTCAAGILSNL 293 (529)
T ss_dssp HTTH---HHHHHTTTTSSCHHHHHHH----HHHHHHHHTTCTT-C--SCCHHHHHHHHHHTT-CSCHHHHHHHHHHHHHH
T ss_pred HCCC---HHHHHHHHhCCChHHHHHH----HHHHHHHhcCChh-h--HHHHhHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 6774 7888888999999988887 4555555544321 1 133588999999998 45678899999999999
Q ss_pred hCC-cchhhhH
Q 041480 1078 SKI-PECGAVL 1087 (1122)
Q Consensus 1078 ~~~-~~~~~~L 1087 (1122)
+.+ +++++.+
T Consensus 294 ~~~~~~~~~~~ 304 (529)
T 1jdh_A 294 TCNNYKNKMMV 304 (529)
T ss_dssp TTTCHHHHHHH
T ss_pred hcCCHHHHHHH
Confidence 987 4465555
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.49 E-value=3.9e-13 Score=149.09 Aligned_cols=166 Identities=19% Similarity=0.201 Sum_probs=143.6
Q ss_pred hhhhHHHhhccHHHHHH-hhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcC-ChhHHHHHHHHHHH
Q 041480 760 TNAKHLISIGGLQFLIC-RFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSK-QVKPRTNTVLLLID 837 (1122)
Q Consensus 760 ~Nr~~IasaGaIp~LV~-LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SG-s~~aRenAv~aL~e 837 (1122)
+|+..++..|++|.|+. +|.+++.+.+..|+.+|.+++..++.+|..|.+.|++++|+.+|.+. +...|.+|+.+|.+
T Consensus 72 dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsn 151 (296)
T 1xqr_A 72 DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151 (296)
T ss_dssp HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 47778899999999999 99999999999999999999988889999999999999999999864 78899999999999
Q ss_pred HHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCC
Q 041480 838 LICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLT 917 (1122)
Q Consensus 838 Ls~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~ 917 (1122)
|+..... . ...+.. .|++++|+.+|+++++..+..|+.+|.+|+...+..+..+++.|+|++|+.+|.+...
T Consensus 152 l~~~~~~--~---~~~~~~---~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~ 223 (296)
T 1xqr_A 152 LVREQEA--G---LLQFLR---LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS 223 (296)
T ss_dssp HHTTCHH--H---HHHHHH---TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCS
T ss_pred HHcCCcH--H---HHHHHH---CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCCh
Confidence 9743221 1 111222 4789999999999999999999999999987655678889999999999999998765
Q ss_pred ChHHHHHHHHHHHHhhcC
Q 041480 918 DEKIQEKCCRALLILGGR 935 (1122)
Q Consensus 918 ~~~~qe~Aa~AL~~Lag~ 935 (1122)
.+|+.|+.||.+|+..
T Consensus 224 --~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 224 --PFHEHVLGALCSLVTD 239 (296)
T ss_dssp --THHHHHHHHHHHHHTT
T ss_pred --hHHHHHHHHHHHHHhC
Confidence 5999999999999863
No 35
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.48 E-value=8.8e-13 Score=138.25 Aligned_cols=201 Identities=14% Similarity=0.069 Sum_probs=161.9
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHH
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLEL 819 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~L 819 (1122)
..++..|..+++. ...++..++..|+|+.|+.+|...+.+.+..++.+|.+++..+..++..|.+.|+++.|+.+
T Consensus 30 ~~a~~~L~~~l~~-----~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 104 (252)
T 4db8_A 30 LSATRKFSQILSD-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104 (252)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHHHHHHcC-----CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence 4566677776654 13477889999999999999999888899999999999987778899999999999999999
Q ss_pred hhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhh
Q 041480 820 LHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSI 899 (1122)
Q Consensus 820 L~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sI 899 (1122)
|.+++...++.|+.+|.+|+.....+ ...+. ..|+++.|+.+|+++++..+..|+.+|.+|+...+.++..+
T Consensus 105 L~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~---~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 176 (252)
T 4db8_A 105 LSSPNEQILQEALWALSNIASGGNEQ-----IQAVI---DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 176 (252)
T ss_dssp GGCSCHHHHHHHHHHHHHHTTSCHHH-----HHHHH---HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhhcCCchH-----HHHHH---HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 99999999999999999997554432 11122 24899999999999999999999999999998655677788
Q ss_pred hhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhcccccccccccc
Q 041480 900 YREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGN 961 (1122)
Q Consensus 900 vReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~ 961 (1122)
+..|+|+.|+.+|.++. ...++.|+.+|.+|+.. .+.....+. +.|+.+.+..+
T Consensus 177 ~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~-----~~~~~~~~~-~~g~i~~L~~l 230 (252)
T 4db8_A 177 IDAGALPALVQLLSSPN--EQILQEALWALSNIASG-----GNEQKQAVK-EAGALEKLEQL 230 (252)
T ss_dssp HHTTCHHHHHHGGGCSS--HHHHHHHHHHHHHHTTS-----CHHHHHHHH-HTTHHHHHHTT
T ss_pred HHCCCHHHHHHHHCCCC--HHHHHHHHHHHHHHhcC-----CHHHHHHHH-HCCcHHHHHHH
Confidence 99999999999998764 47999999999999952 233344443 45555655543
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.47 E-value=5e-14 Score=129.36 Aligned_cols=75 Identities=19% Similarity=0.443 Sum_probs=66.9
Q ss_pred cCCCCCcccccccchhccCCcccC-CCcccchHHHHHHHHh-CCCCCCCCCCcC-CCCCCCcchHHHHHHHHHHHHhcc
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLE-SGQTFECEAIKEWIEQ-GNRTCPVTGKYL-ACPSLPLTNFILKRVIDGWKSENC 716 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~-cGhTycRscIe~wl~~-g~~tCP~trq~L-~~~~ll~pN~~Lk~lIe~w~~~n~ 716 (1122)
...++++|.||||.++|.|||+++ |||+||+.||..||.. +...||+|++++ .... +.+|..|+.+|+.|...++
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~-~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA-LIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTS-CEECHHHHHHHHHHHHHHT
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccc-cCcCHHHHHHHHHHHHHHh
Confidence 567899999999999999999999 9999999999999986 457999999997 4555 5999999999999998654
No 37
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.47 E-value=1.2e-12 Score=137.16 Aligned_cols=239 Identities=12% Similarity=0.121 Sum_probs=183.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHccc-Cccch
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLS-RRRDV 847 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~-~~k~~ 847 (1122)
...+.++.+|.+++.+.+..++..|.++...+..++..+.+.|+++.|+.+|.+.+...+..|+.+|.+|+... .++
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-- 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI-- 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH--
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH--
Confidence 45678999999999999999988886544446678888999999999999999999999999999999998532 222
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhh-hhhhhhccHHHHHHHHhccCCChHHHHHHH
Q 041480 848 STLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRK-YSIYREAAVDAITVALEESLTDEKIQEKCC 926 (1122)
Q Consensus 848 ~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK-~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa 926 (1122)
..+. ..|+++.|+.+|+++++..+..|+.+|.+|+.. .+++ ..+++.|+|+.|+.+|.++. ..+++.|+
T Consensus 90 ----~~i~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~ 159 (252)
T 4db8_A 90 ----QAVI---DAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPN--EQILQEAL 159 (252)
T ss_dssp ----HHHH---HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHH
T ss_pred ----HHHH---HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CchHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHH
Confidence 1122 248999999999999999999999999999885 4466 78999999999999998764 36999999
Q ss_pred HHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHhcCCchhhHH
Q 041480 927 RALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRKRSFLE 1006 (1122)
Q Consensus 927 ~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~~~L~ 1006 (1122)
.+|.+|+.. .+... ..++..|. +.
T Consensus 160 ~~L~~l~~~-----~~~~~------------------------------------------------~~~~~~~~---i~ 183 (252)
T 4db8_A 160 WALSNIASG-----GNEQI------------------------------------------------QAVIDAGA---LP 183 (252)
T ss_dssp HHHHHHTTS-----CHHHH------------------------------------------------HHHHHTTC---HH
T ss_pred HHHHHHHcC-----ChHHH------------------------------------------------HHHHHCCC---HH
Confidence 999999852 10000 13344554 56
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCC
Q 041480 1007 TVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKI 1080 (1122)
Q Consensus 1007 aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~ 1080 (1122)
.|.+.+.+++..+...+ +|....|....+...+.+...+.++.|+++|+.+ +.+-|..|+.+|.|+.++
T Consensus 184 ~L~~ll~~~~~~v~~~a----~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 184 ALVQLLSSPNEQILQEA----LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp HHHHGGGCSSHHHHHHH----HHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHTTC--
T ss_pred HHHHHHCCCCHHHHHHH----HHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHHHhcC
Confidence 67777888887777777 4444555544444466777778999999999965 467899999999998753
No 38
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.46 E-value=1.6e-12 Score=156.58 Aligned_cols=291 Identities=14% Similarity=0.102 Sum_probs=207.8
Q ss_pred HhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhc-cchHHHHHHhhcC-ChhHHHHHHHHHHHHHcccC
Q 041480 766 ISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARN-INVYSLLELLHSK-QVKPRTNTVLLLIDLICLSR 843 (1122)
Q Consensus 766 asaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~-GaI~pLV~LL~SG-s~~aRenAv~aL~eLs~~~~ 843 (1122)
++.|+|+.|+.+|...+...+..++..|.+++. +..++..+... |.+++|+.+|.++ +...+..|+.+|.+|+....
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~-~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHT-STTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHC-CChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence 567999999999998999999999999999987 44677777654 8899999999876 78899999999999986544
Q ss_pred ccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHH
Q 041480 844 RRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQE 923 (1122)
Q Consensus 844 ~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe 923 (1122)
++ ..|. ..|+|+.|+.+|++..+..+..|+.+|.+|+...+..+..+++.|+|+.|+.+|.+... +.+.
T Consensus 90 ~~------~~i~---~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~--~~~~ 158 (644)
T 2z6h_A 90 GL------LAIF---KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--KFLA 158 (644)
T ss_dssp HH------HHHH---TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH--HHHH
T ss_pred hH------HHHH---HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCH--HHHH
Confidence 32 1122 24899999999999999999999999999998656678888899999999999988643 6788
Q ss_pred HHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHH--hHHHHHHH------hHHH
Q 041480 924 KCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQ--ASEEWLRK------LSAS 995 (1122)
Q Consensus 924 ~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~--~~~~w~rk------~a~~ 995 (1122)
.++.+|.+|+.. ....+..+...+|+ +.+..++.+.. .+.. .+-..+++ ....
T Consensus 159 ~a~~~L~~La~~-----~~~~~~~i~~~g~v-~~Lv~lL~~~~-------------~~~~~~~a~~~L~nLs~~~~~~~~ 219 (644)
T 2z6h_A 159 ITTDCLQILAYG-----NQESKLIILASGGP-QALVNIMRTYT-------------YEKLLWTTSRVLKVLSVCSSNKPA 219 (644)
T ss_dssp HHHHHHHHHHTT-----CHHHHHHHHHTTHH-HHHHHHHTTCC-------------CHHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHHHHHHHhc-----CcHHHHHHHHcCCh-HHHHHHHHcCC-------------hHHHHHHHHHHHHHHhcCcccHHH
Confidence 888999999952 23334445454444 54443322110 0110 01111111 1246
Q ss_pred HhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhh
Q 041480 996 LLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLL 1075 (1122)
Q Consensus 996 Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~ 1075 (1122)
++..|. +..|.+.+.+++..+...|+ |....|+..... ......++|.|+++|++ .+.+-|..|+.+|.
T Consensus 220 l~~~g~---l~~L~~ll~~~~~~~~~~a~----~~L~nL~~~~~~---~~~~~~~i~~Lv~lL~~-~d~~v~~~a~~aL~ 288 (644)
T 2z6h_A 220 IVEAGG---MQALGLHLTDPSQRLVQNCL----WTLRNLSDAATK---QEGMEGLLGTLVQLLGS-DDINVVTCAAGILS 288 (644)
T ss_dssp HHHTTH---HHHHHTTTTCSCHHHHHHHH----HHHHHHGGGCTT---CCSCHHHHHHHHHHTTC-SCHHHHHHHHHHHH
T ss_pred HHHCCC---HHHHHHHHhcCCHHHHHHHH----HHHHHHhhcchh---hhhhhhHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 677774 78888889999888888874 444444433321 12334789999999994 45778999999999
Q ss_pred hhhCCc-chhhhHHHHhhHhHHHhhh
Q 041480 1076 NFSKIP-ECGAVLKTIAAEIRIPLQS 1100 (1122)
Q Consensus 1076 ~~~~~~-~~~~~L~~~a~gi~~~Lr~ 1100 (1122)
+|..++ ++++.+ ...|+++.|-+
T Consensus 289 ~L~~~~~~~~~~v--~~~g~v~~Lv~ 312 (644)
T 2z6h_A 289 NLTCNNYKNKMMV--CQVGGIEALVR 312 (644)
T ss_dssp HHHTTCHHHHHHH--HHTTHHHHHHH
T ss_pred HHHcCCHHHHHHH--HHcCCHHHHHH
Confidence 999874 555555 23344444433
No 39
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.46 E-value=4.3e-12 Score=157.08 Aligned_cols=300 Identities=15% Similarity=0.115 Sum_probs=214.3
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHh-hccHHHHHHhhcCC-CHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHH
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLIS-IGGLQFLICRFESG-KLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLE 818 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~Ias-aGaIp~LV~LL~sg-s~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~ 818 (1122)
.|+..|..|... ..++..++. .|+++.|+.+|..+ +.+.+..++..|.+++. +.+++..|.+.|+|+.|+.
T Consensus 169 ~A~~~L~~L~~~------~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~ 241 (780)
T 2z6g_A 169 KAAVMVHQLSKK------EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVN 241 (780)
T ss_dssp HHHHHHHHHHTS------HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHhCC------ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHH
Confidence 445555555432 135556664 48999999999865 88899999999999886 4577889999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhh
Q 041480 819 LLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYS 898 (1122)
Q Consensus 819 LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~s 898 (1122)
+|.+++...|..|+.+|.+|+...... . ..+. ..|+++.|+.+++......+..++.+|.+|+...+.++..
T Consensus 242 lL~~~~~~v~~~A~~aL~nLa~~~~~~--~---~~v~---~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~ 313 (780)
T 2z6g_A 242 MLGSPVDSVLFHAITTLHNLLLHQEGA--K---MAVR---LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 313 (780)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHSTTH--H---HHHH---HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCChhh--H---HHHH---HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 999999999999999999998764432 1 1122 2488999999999877777888888999998866678999
Q ss_pred hhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCC
Q 041480 899 IYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPL 978 (1122)
Q Consensus 899 IvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~ 978 (1122)
+++.|+|+.|+.+|+.+.. +..++.|+.+|.+|+.+ ...+..+++ +|+.+.+..+..+ ..
T Consensus 314 i~~~~~i~~Lv~lL~~~~~-~~~~~~a~~aL~~Ls~~------~~~~~~i~~-~g~l~~Ll~lL~~---------~~--- 373 (780)
T 2z6g_A 314 ILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVC------SSNKPAIVE-AGGMQALGLHLTD---------PS--- 373 (780)
T ss_dssp HHTTTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTS------TTHHHHHHH-TTHHHHHGGGTTC---------SC---
T ss_pred HHHcCCHHHHHHHHhcCCH-HHHHHHHHHHHHHhhcC------hHHHHHHHH-hchHHHHHHHHcC---------Cc---
Confidence 9999999999999998765 46788899999999963 123444544 4544555443221 00
Q ss_pred chhHHhHHHHH-HHhHHHHh-cCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHH
Q 041480 979 DDEEQASEEWL-RKLSASLL-GNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKE 1056 (1122)
Q Consensus 979 ~~ee~~~~~w~-rk~a~~Lv-~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~ 1056 (1122)
.+-...-.|. .+++..-. ..+...++..|...|.+.+.++...| +|+...|...++...+.+...+.++.|++
T Consensus 374 -~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A----~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~ 448 (780)
T 2z6g_A 374 -QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCA----AGILSNLTCNNYKNKMMVCQVGGIEALVR 448 (780)
T ss_dssp -HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHH----HHHHHHHTSSCHHHHHHHHTTTHHHHHHH
T ss_pred -hHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHH----HHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 0000011111 22221100 01234578889999999999887766 67777777766545677777889999999
Q ss_pred hhcCCCC-hhhHHHHHHHhhhhhCC
Q 041480 1057 ILQNGEQ-PQQKVLASMSLLNFSKI 1080 (1122)
Q Consensus 1057 ~L~~~~~-~eer~LA~~aL~~~~~~ 1080 (1122)
+|..... .+-|.-|+.+|.|++.+
T Consensus 449 lL~~~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 449 TVLRAGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHccCCHHHHHHHHHHHHHHHHhc
Confidence 9985332 36788899999999875
No 40
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.45 E-value=8.2e-12 Score=140.88 Aligned_cols=321 Identities=16% Similarity=0.118 Sum_probs=220.7
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhh-ccHHHHHHhhcCC-CHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHH
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISI-GGLQFLICRFESG-KLEEKARVAALMCCCIEADAGCRNQMARNINVYSLL 817 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~Iasa-GaIp~LV~LL~sg-s~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV 817 (1122)
..|+..|++++.... + .....++.. |+++.|+.+|..+ +.+.+..++.+|.+++..+.++...+.+.|.++.|+
T Consensus 38 ~~A~~~L~~l~~~~~---~-~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 113 (450)
T 2jdq_A 38 LSATQKFRKLLSKEP---N-PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFI 113 (450)
T ss_dssp HHHHHHHHHHHHSSS---S-CCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHhcCCC---C-CcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHH
Confidence 356667777764321 1 122345666 9999999999987 788899999999988876666777788889999999
Q ss_pred HHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhc-CCcchHHHHHHHHHhhccCC-Chh
Q 041480 818 ELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQR-SPPEQRPLFSILLLHLDLLV-EPR 895 (1122)
Q Consensus 818 ~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqs-gs~~~k~lAA~aLlnLsll~-Epn 895 (1122)
.+|.+++...|+.|+.+|.+|+..... ... .+.+ .|+++.|+.+++. .++..+..|+.+|.+|+... ...
T Consensus 114 ~lL~~~~~~vr~~a~~~L~~l~~~~~~--~~~---~~~~---~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 114 ELLSSEFEDVQEQAVWALGNIAGDSTM--CRD---YVLD---CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHH--HHH---HHHH---TTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HHHcCCCHHHHHHHHHHHHHHccCCHH--HHH---HHHH---CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999854321 111 1121 3789999999995 56788999999999998754 223
Q ss_pred hhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCC
Q 041480 896 KYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDS 975 (1122)
Q Consensus 896 K~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~ 975 (1122)
+..++ .+++++|+.+|..+. ...+..|+.+|.+|+.. .+.....+. ..|+.+.+..++.+.++ .
T Consensus 186 ~~~~~-~~~l~~L~~~l~~~~--~~v~~~a~~~L~~l~~~-----~~~~~~~~~-~~~~i~~L~~ll~~~~~---~---- 249 (450)
T 2jdq_A 186 EFAKV-SPCLNVLSWLLFVSD--TDVLADACWALSYLSDG-----PNDKIQAVI-DAGVCRRLVELLMHNDY---K---- 249 (450)
T ss_dssp CGGGT-GGGHHHHHHHTTCCC--HHHHHHHHHHHHHHTSS-----SHHHHHHHH-HTTTHHHHHHHTTCSCH---H----
T ss_pred CHHHH-HHHHHHHHHHHccCC--HHHHHHHHHHHHHHHCC-----CcHHHHHHH-HcCcHHHHHHHHCCCch---h----
Confidence 33344 899999999998654 36899999999999963 122233333 34555655443321100 0
Q ss_pred CCCchhHHhHHHHHHH-------hHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHH
Q 041480 976 TPLDDEEQASEEWLRK-------LSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFS 1048 (1122)
Q Consensus 976 ~~~~~ee~~~~~w~rk-------~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~ 1048 (1122)
. -+. +-.-+.+ ....++..| ++..|...+.+.++.+...+ +|....|....+...+.....
T Consensus 250 --v--~~~-a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~ll~~~~~~vr~~a----~~~L~~l~~~~~~~~~~~~~~ 317 (450)
T 2jdq_A 250 --V--VSP-ALRAVGNIVTGDDIQTQVILNCS---ALQSLLHLLSSPKESIKKEA----CWTISNITAGNRAQIQTVIDA 317 (450)
T ss_dssp --H--HHH-HHHHHHHHTTSCHHHHHHHHTTT---HHHHHHHHTTCSSHHHHHHH----HHHHHHHTTSCHHHHHHHHHT
T ss_pred --H--HHH-HHHHHHHHhhCChHHHHHHHHCc---cHHHHHHHHcCCCHHHHHHH----HHHHHHHHcCCHHHHHHHHHC
Confidence 0 011 1111111 122355555 47888888999998888887 455555555444345666667
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHhhhhhCC--cchhhhHHHHhhHhHHHhhhhcc
Q 041480 1049 AVISQLKEILQNGEQPQQKVLASMSLLNFSKI--PECGAVLKTIAAEIRIPLQSLTE 1103 (1122)
Q Consensus 1049 ~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~--~~~~~~L~~~a~gi~~~Lr~L~~ 1103 (1122)
.++|.|+++|..+ +.+-|..|+.+|.||+.+ ++..+.+ +..|+.+.|-++-.
T Consensus 318 ~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l--~~~~~i~~L~~ll~ 371 (450)
T 2jdq_A 318 NIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYL--VELGCIKPLCDLLT 371 (450)
T ss_dssp THHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHH--HHHTCHHHHHHGGG
T ss_pred CCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHH--HHCCCHHHHHHHhc
Confidence 8999999999954 567899999999999874 5555555 35677777766653
No 41
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.45 E-value=2e-12 Score=159.96 Aligned_cols=277 Identities=14% Similarity=0.083 Sum_probs=200.4
Q ss_pred HHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHh-ccchHHHHHHhhcC-ChhHHHHHHHHHHHHHcc
Q 041480 764 HLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMAR-NINVYSLLELLHSK-QVKPRTNTVLLLIDLICL 841 (1122)
Q Consensus 764 ~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae-~GaI~pLV~LL~SG-s~~aRenAv~aL~eLs~~ 841 (1122)
.+ ..|+||.|+.+|...+...|..|+.+|.+++. +..++..|.. .+.++.|+++|.++ +...|.+|+.+|.+|+..
T Consensus 146 ~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~-~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~ 223 (780)
T 2z6g_A 146 EL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH 223 (780)
T ss_dssp HH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT-SHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC-CChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence 44 38999999999998899999999999999887 4467777775 48999999999866 788999999999999866
Q ss_pred cCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHH
Q 041480 842 SRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKI 921 (1122)
Q Consensus 842 ~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~ 921 (1122)
..++. .|. ..|+|+.|+.+|+++++..+..|+.+|.+|+...+..+..+.+.|+|+.|+.+|.... .+.
T Consensus 224 ~~~~~------~i~---~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~--~~v 292 (780)
T 2z6g_A 224 REGLL------AIF---KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKF 292 (780)
T ss_dssp HHHHH------HHH---HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--HHH
T ss_pred chhHH------HHH---HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCC--HHH
Confidence 44321 122 3489999999999999999999999999999865657777778999999999998754 368
Q ss_pred HHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHH------hHHH
Q 041480 922 QEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRK------LSAS 995 (1122)
Q Consensus 922 qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk------~a~~ 995 (1122)
++.|+.+|.+|+.. ....+..+....|+ +.+..++.+. .. ..-.+. +..-+.. ....
T Consensus 293 ~~~a~~aL~~La~~-----~~e~~~~i~~~~~i-~~Lv~lL~~~---------~~-~~~~~~-a~~aL~~Ls~~~~~~~~ 355 (780)
T 2z6g_A 293 LAITTDCLQILAYG-----NQESKLIILASGGP-QALVNIMRTY---------TY-EKLLWT-TSRVLKVLSVCSSNKPA 355 (780)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHTTTHH-HHHHHHHTTC---------CC-HHHHHH-HHHHHHHHHTSTTHHHH
T ss_pred HHHHHHHHHHHhcC-----ChHHHHHHHHcCCH-HHHHHHHhcC---------CH-HHHHHH-HHHHHHHhhcChHHHHH
Confidence 99999999999852 22334444444444 4443322211 00 000111 1111111 1235
Q ss_pred HhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhh
Q 041480 996 LLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLL 1075 (1122)
Q Consensus 996 Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~ 1075 (1122)
++..|. +..|...+.+.+..+.+.| +|....|...... ..+...++|.|+++|++ ...+-|..|+.+|.
T Consensus 356 i~~~g~---l~~Ll~lL~~~~~~~~~~a----~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~-~d~~vr~~A~~aL~ 424 (780)
T 2z6g_A 356 IVEAGG---MQALGLHLTDPSQRLVQNC----LWTLRNLSDAATK---QEGMEGLLGTLVQLLGS-DDINVVTCAAGILS 424 (780)
T ss_dssp HHHTTH---HHHHGGGTTCSCHHHHHHH----HHHHHHHHTTCTT---CSCCHHHHHHHHHHTTC-SCHHHHHHHHHHHH
T ss_pred HHHhch---HHHHHHHHcCCchHHHHHH----HHHHHHHhccchh---hhhhhhHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 566664 7888888999988888887 4555555543321 12346799999999984 56778999999999
Q ss_pred hhhCCc
Q 041480 1076 NFSKIP 1081 (1122)
Q Consensus 1076 ~~~~~~ 1081 (1122)
+|+.++
T Consensus 425 ~L~~~~ 430 (780)
T 2z6g_A 425 NLTCNN 430 (780)
T ss_dssp HHTSSC
T ss_pred HHHhCC
Confidence 999985
No 42
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.9e-12 Score=158.77 Aligned_cols=257 Identities=14% Similarity=0.103 Sum_probs=187.4
Q ss_pred hhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChh---HHHHHHHHHH
Q 041480 760 TNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVK---PRTNTVLLLI 836 (1122)
Q Consensus 760 ~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~---aRenAv~aL~ 836 (1122)
.|+..++.+|+||.|+.++.+++...|..++.+|.+++. +.++|..|++.|++++|+.+|.+++.. .|++|+.+|.
T Consensus 448 ~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALA 526 (778)
T 3opb_A 448 FNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALT 526 (778)
T ss_dssp HHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 378889999999999999999999999999999999986 789999999999999999999988654 8999999999
Q ss_pred HHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCc--------------chHHHHHHHHHhhccCC----Chhhhh
Q 041480 837 DLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPP--------------EQRPLFSILLLHLDLLV----EPRKYS 898 (1122)
Q Consensus 837 eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~--------------~~k~lAA~aLlnLsll~----EpnK~s 898 (1122)
+|+...++..+ + ......|+|++|+.+|..++. -++-.|+.||.||+... |+.|..
T Consensus 527 rLlis~np~~~---f---~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~ 600 (778)
T 3opb_A 527 RMLIFTNPGLI---F---KKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKH 600 (778)
T ss_dssp HHHHTSCHHHH---S---SSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhcCCHHHH---c---CCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 99865554311 1 111135999999999984322 13778999999999875 345788
Q ss_pred hhhh-ccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCC
Q 041480 899 IYRE-AAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTP 977 (1122)
Q Consensus 899 IvRe-GAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~ 977 (1122)
|+++ ||++.|+++|.+.. ...|..|+.+|.||+.+ .+.++. +. .+ . ..
T Consensus 601 Ii~~~ga~~~L~~LL~s~n--~~VrrAA~elI~NL~~~----~e~i~~----k~-----------~~--~-----~~--- 649 (778)
T 3opb_A 601 IVSTKVYWSTIENLMLDEN--VPLQRSTLELISNMMSH----PLTIAA----KF-----------FN--L-----EN--- 649 (778)
T ss_dssp HHHSHHHHHHHHHGGGCSS--HHHHHHHHHHHHHHHTS----GGGTGG----GT-----------SC--C-----SS---
T ss_pred HHHhcCHHHHHHHHHhCCC--HHHHHHHHHHHHHHhCC----cHHHHH----HH-----------Hh--h-----cC---
Confidence 9995 99999999998754 36999999999999962 111000 00 00 0 00
Q ss_pred CchhHHhHHHHHHHhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchh-hHhhHHHhHHHHHH
Q 041480 978 LDDEEQASEEWLRKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEF-QLSAFSAVISQLKE 1056 (1122)
Q Consensus 978 ~~~ee~~~~~w~rk~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~-~~~A~~~ll~~Lv~ 1056 (1122)
+.. .++ |.-|+..+.+++.++.+++ +|+..++....+... ..+....++..|+.
T Consensus 650 --~~~----------------~~r---L~lLV~Ll~s~D~~~r~AA----agALAnLts~~~~ia~~ll~~~~gi~~Ll~ 704 (778)
T 3opb_A 650 --PQS----------------LRN---FNILVKLLQLSDVESQRAV----AAIFANIATTIPLIAKELLTKKELIENAIQ 704 (778)
T ss_dssp --HHH----------------HHH---HHHHHHGGGCSCHHHHHHH----HHHHHHHHHHCHHHHHHHTTCHHHHHHHHH
T ss_pred --chh----------------hcc---HHHHHHHHcCCCHHHHHHH----HHHHHHhcCCChHHHHHHHHccccHHHHHH
Confidence 000 011 4666666788889999887 788888864443223 33444578889999
Q ss_pred hhcCC-CChhhHHHHHHHhhhhhC
Q 041480 1057 ILQNG-EQPQQKVLASMSLLNFSK 1079 (1122)
Q Consensus 1057 ~L~~~-~~~eer~LA~~aL~~~~~ 1079 (1122)
+|+.. .+.+-|.=++++|+|++.
T Consensus 705 lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 705 VFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHhccCCCHHHHHHHHHHHHHHHH
Confidence 99962 445556667788899885
No 43
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.40 E-value=6.8e-12 Score=130.18 Aligned_cols=199 Identities=15% Similarity=0.143 Sum_probs=159.2
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHh
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELL 820 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL 820 (1122)
.++..|..|.... ..++..++..|+++.|+.+|.+++.+.+..++.+|.+++..+..++..+.+.|+++.|+.+|
T Consensus 21 ~a~~~L~~l~~~~-----~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll 95 (252)
T 4hxt_A 21 EAARDLAEIASGP-----ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL 95 (252)
T ss_dssp HHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHhcCC-----cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH
Confidence 4555666665432 24788899999999999999999999999999999999986688999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhh
Q 041480 821 HSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIY 900 (1122)
Q Consensus 821 ~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIv 900 (1122)
.+++...+..|+.+|.+|+..... .. ..+.+ .|+++.|+.++++.++..+..++.+|.+|+...+.++..++
T Consensus 96 ~~~~~~v~~~a~~~L~~l~~~~~~--~~---~~~~~---~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 167 (252)
T 4hxt_A 96 TSTDSEVQKEAARALANIASGPDE--AI---KAIVD---AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 167 (252)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCHH--HH---HHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHH--HH---HHHHH---CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999843221 11 11222 48899999999999999999999999999986555667899
Q ss_pred hhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccc
Q 041480 901 REAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEG 960 (1122)
Q Consensus 901 ReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~ 960 (1122)
..|+++.|+.+|.+... ..|..|+.+|.+|+.. .+-....+ ...|+.+.+..
T Consensus 168 ~~~~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~-----~~~~~~~l-~~~~~i~~L~~ 219 (252)
T 4hxt_A 168 DAGGVEVLVKLLTSTDS--EVQKEAARALANIASG-----PTSAIKAI-VDAGGVEVLQK 219 (252)
T ss_dssp HTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHTTS-----BHHHHHHH-HHTTHHHHHHH
T ss_pred HCcCHHHHHHHHCCCCH--HHHHHHHHHHHHHHcC-----CHHHHHHH-HHCCCHHHHHH
Confidence 99999999999996553 6999999999999952 33333344 44555565554
No 44
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.35 E-value=3.1e-13 Score=167.36 Aligned_cols=75 Identities=21% Similarity=0.307 Sum_probs=69.5
Q ss_pred cCCCCCcccccccchhccCCcccCCC-cccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHhccc
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESG-QTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSENCM 717 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cG-hTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~n~~ 717 (1122)
..++|++|+|||+++||+|||++++| +||||++|++|+.. +.+||.|+++|+... ++||+.||.+|+.|+.++..
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~-liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLED-VTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGG-CEECHHHHHHHHHHHHHHHT
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCccc-ccccHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999998 79999999999987 679999999999988 59999999999999987653
No 45
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.34 E-value=3.7e-13 Score=130.59 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=63.5
Q ss_pred CCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC-CCCCcchHHHHHHHHHHHH
Q 041480 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC-PSLPLTNFILKRVIDGWKS 713 (1122)
Q Consensus 643 ~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~-~~ll~pN~~Lk~lIe~w~~ 713 (1122)
.+++++.||||.++|.+||+++|||+||+.||..|+..+...||+|++++.. .. +.+|..|..+|+.|..
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~-~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYA-MQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCC-CCCCHHHHHHHHHHST
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCC-CCCCHHHHHHHHHHcc
Confidence 4467899999999999999999999999999999999777799999999987 55 5899999999998864
No 46
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.34 E-value=2.1e-13 Score=117.78 Aligned_cols=54 Identities=19% Similarity=0.442 Sum_probs=48.6
Q ss_pred cccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchH
Q 041480 647 DFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNF 702 (1122)
Q Consensus 647 ef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~ 702 (1122)
.|.||||+++|+|||++ +|||+|||.||++|+.++ .+||+|+++|...+| +||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~L-ip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEI-VEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGC-EECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhc-EECc
Confidence 58999999999999999 999999999999999864 569999999999884 8874
No 47
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.33 E-value=1.5e-11 Score=125.66 Aligned_cols=177 Identities=14% Similarity=0.063 Sum_probs=143.2
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccch
Q 041480 768 IGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDV 847 (1122)
Q Consensus 768 aGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~ 847 (1122)
.|..+.|+.+|.+.+.+.+..++..|.+++..+..++..|.+.|+++.|+.+|.+++...+..|+.+|.+|+..+.. .
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~ 88 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE--Q 88 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH--H
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH--H
Confidence 47889999999999999999999999999877888999999999999999999999999999999999999743221 1
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHH
Q 041480 848 STLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCR 927 (1122)
Q Consensus 848 ~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~ 927 (1122)
. ..+. ..|+++.|+.+|+++++..+..|+.+|.+|+...+..+..++..|+|+.|+.+|.++. ..+|+.|+.
T Consensus 89 ~---~~i~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~ 160 (210)
T 4db6_A 89 I---QAVI---DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALW 160 (210)
T ss_dssp H---HHHH---HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHH
T ss_pred H---HHHH---HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHH
Confidence 1 1122 2489999999999999999999999999999865566778899999999999998764 379999999
Q ss_pred HHHHhhcCCCCCchhhhhhhhhccccccccccc
Q 041480 928 ALLILGGRFSFSREVANESWILKPAGFNDRCEG 960 (1122)
Q Consensus 928 AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~ 960 (1122)
+|.+|+.. .+.....+ ...|+.+.+..
T Consensus 161 aL~~l~~~-----~~~~~~~~-~~~g~i~~L~~ 187 (210)
T 4db6_A 161 ALSNIASG-----GNEQKQAV-KEAGALEKLEQ 187 (210)
T ss_dssp HHHHHHTS-----CHHHHHHH-HHTTHHHHHHH
T ss_pred HHHHHHcC-----CcHHHHHH-HHCCCHHHHHH
Confidence 99999963 12233334 44555566554
No 48
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.32 E-value=3.5e-13 Score=146.11 Aligned_cols=73 Identities=16% Similarity=0.379 Sum_probs=65.2
Q ss_pred cCCCCCcccccccchhccCCccc-CCCcccchHHHHHHHHh-CCCCCCC--CCCcCCCCCCCcchHHHHHHHHHHHHh
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQ-GNRTCPV--TGKYLACPSLPLTNFILKRVIDGWKSE 714 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~-g~~tCP~--trq~L~~~~ll~pN~~Lk~lIe~w~~~ 714 (1122)
......+|.||||+++|+|||++ .|||+|||.||++||.. +..+||+ |++++.... +.||..|+++|+.|...
T Consensus 175 v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d-L~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 175 IEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD-FVRDPIMELRCKIAKMK 251 (267)
T ss_dssp CCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG-EEECHHHHHHHHHHHHH
T ss_pred ecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh-CCcCHHHHHHHHHHHHH
Confidence 34468899999999999999986 99999999999999986 4568999 999998888 59999999999999764
No 49
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=131.74 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=64.5
Q ss_pred CCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCC-CCCcchHHHHHHHHHHHH
Q 041480 642 TSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACP-SLPLTNFILKRVIDGWKS 713 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~-~ll~pN~~Lk~lIe~w~~ 713 (1122)
..++++|.||||.++|.|||+++|||+||+.||..|+..+..+||+|++++... . +.+|..|+.+|+.|..
T Consensus 73 ~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~-l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYI-MIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCC-CCBCHHHHHHHHHHST
T ss_pred HhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCC-CCCCHHHHHHHHHHhh
Confidence 345788999999999999999999999999999999998777999999999877 5 5899999999998864
No 50
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.19 E-value=5.5e-12 Score=117.52 Aligned_cols=72 Identities=14% Similarity=0.299 Sum_probs=64.1
Q ss_pred CCCCcccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHhcc
Q 041480 643 SIPQDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSENC 716 (1122)
Q Consensus 643 ~ipeef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~n~ 716 (1122)
.+++++.||||.+.|.+||++ +|||+||+.||..|+.. ..+||+|++++.... +.+|..|.++|+.|.....
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~-l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPD-LKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGG-CEECHHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhh-CCcCHHHHHHHHHHHHHHH
Confidence 346789999999999999998 99999999999999985 579999999998777 4899999999999987543
No 51
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.15 E-value=1.4e-12 Score=116.05 Aligned_cols=66 Identities=21% Similarity=0.433 Sum_probs=57.1
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhC------CCCCCCCCCcCCCCCCCcchHHHHHH
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQG------NRTCPVTGKYLACPSLPLTNFILKRV 707 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g------~~tCP~trq~L~~~~ll~pN~~Lk~l 707 (1122)
...+.+++.||||++.|.+||+++|||+||+.||.+|+... ...||+|++++.... +.+|..|+++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~-l~~n~~l~~l 77 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH-LQANQHLANI 77 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG-GGTCSSSCCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh-CCcCHHHHHh
Confidence 45678999999999999999999999999999999999863 678999999998777 4788766544
No 52
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.15 E-value=1.3e-11 Score=116.95 Aligned_cols=69 Identities=17% Similarity=0.363 Sum_probs=61.3
Q ss_pred CCCCcccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCCC----CCCcchHHHHHHHHHHHH
Q 041480 643 SIPQDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLACP----SLPLTNFILKRVIDGWKS 713 (1122)
Q Consensus 643 ~ipeef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~~----~ll~pN~~Lk~lIe~w~~ 713 (1122)
.+++++.||||.++|.|||++ +|||+||+.||..|+.. ..+||+|++.+... . +.+|..|..+|+.|..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~-l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLN-IRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGG-EEECHHHHHHHHHHST
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccc-cCcCHHHHHHHHHHhh
Confidence 457899999999999999998 99999999999999986 48999999998765 4 4799999999998753
No 53
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.15 E-value=1.1e-11 Score=125.89 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=62.7
Q ss_pred CCCCCcccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHH
Q 041480 642 TSIPQDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKS 713 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~ 713 (1122)
..+.+++.||||.++|.+||++ +|||+||+.||..|+..+...||+|+.++.....+.+|..|..+|+.|..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 3567889999999999999998 99999999999999998889999999998543325899999999998865
No 54
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.15 E-value=1.2e-09 Score=134.17 Aligned_cols=259 Identities=14% Similarity=0.050 Sum_probs=176.1
Q ss_pred hhhHHHhh-ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhhcch-------------------------------------
Q 041480 761 NAKHLISI-GGLQFLICRFES-GKLEEKARVAALMCCCIEADA------------------------------------- 801 (1122)
Q Consensus 761 Nr~~Iasa-GaIp~LV~LL~s-gs~Eek~~AaalL~~La~~D~------------------------------------- 801 (1122)
.+..++.. |++..|+.+|.. .+....--++.+|.+|....+
T Consensus 367 VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~ 446 (778)
T 3opb_A 367 VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDIL 446 (778)
T ss_dssp HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHH
Confidence 44455543 667777777763 444445556666666644211
Q ss_pred h-hHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcc---h
Q 041480 802 G-CRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPE---Q 877 (1122)
Q Consensus 802 s-nR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~---~ 877 (1122)
+ ++..|.+.|++++|+.+|.+++...|+.|+.+|.+|+....++.. +.. -|++++|+.+|.+++.. .
T Consensus 447 ~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~------lvq---qGal~~LL~lL~s~~~~~~~~ 517 (778)
T 3opb_A 447 LFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ------LAQ---QGAVKIILEYLANKQDIGEPI 517 (778)
T ss_dssp HHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHH------HHH---TTHHHHHHHHTTCC---CCHH
T ss_pred HHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHH------HHH---CCCHHHHHHHHhcCCCcchHH
Confidence 1 567888999999999999999999999999999999976555421 232 38899999999999765 6
Q ss_pred HHHHHHHHHhhccCCChhhhhhh--h-hccHHHHHHHHhccCC------------ChHHHHHHHHHHHHhhcCCCCCchh
Q 041480 878 RPLFSILLLHLDLLVEPRKYSIY--R-EAAVDAITVALEESLT------------DEKIQEKCCRALLILGGRFSFSREV 942 (1122)
Q Consensus 878 k~lAA~aLlnLsll~EpnK~sIv--R-eGAV~aLV~LL~~g~~------------~~~~qe~Aa~AL~~Lag~fS~sGe~ 942 (1122)
+..||.+|.+|....+|.. .+. + -|||++|+.||..+.. +...+-.|+.||.|||+.-..+|+
T Consensus 518 k~~AA~ALArLlis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E- 595 (778)
T 3opb_A 518 RILGCRALTRMLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGE- 595 (778)
T ss_dssp HHHHHHHHHHHHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHH-
T ss_pred HHHHHHHHHHHHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccch-
Confidence 8999999999987555322 221 2 3999999999983211 112477899999999963100011
Q ss_pred hhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHhcC-CchhhHHHHHHhhccCCchhHH
Q 041480 943 ANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGN-RKRSFLETVSKILGSRNSDLVS 1021 (1122)
Q Consensus 943 ~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~-G~~~~L~aL~~~l~s~~~~l~~ 1021 (1122)
+ . ...++.+ |. +..|.+.|.+.+..+.+
T Consensus 596 ---------------------------------------~-----~----r~~Ii~~~ga---~~~L~~LL~s~n~~Vrr 624 (778)
T 3opb_A 596 ---------------------------------------E-----V----CKHIVSTKVY---WSTIENLMLDENVPLQR 624 (778)
T ss_dssp ---------------------------------------H-----H----HHHHHHSHHH---HHHHHHGGGCSSHHHHH
T ss_pred ---------------------------------------H-----H----HHHHHHhcCH---HHHHHHHHhCCCHHHHH
Confidence 1 0 0234444 43 56667778888888888
Q ss_pred HHHHHHHHHHhhhccCCCchh-hHhh------HHHhHHHHHHhhcCCCChhhHHHHHHHhhhhh-CCcchhhhH
Q 041480 1022 VCLTTVAWLSHALSAQPDAEF-QLSA------FSAVISQLKEILQNGEQPQQKVLASMSLLNFS-KIPECGAVL 1087 (1122)
Q Consensus 1022 acL~t~aWl~~~L~~~~~t~~-~~~A------~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~-~~~~~~~~L 1087 (1122)
++ +|+++-|...++. + +..+ ...-++.||++++. .+.+-|..|+.+|.|+. .++...+.+
T Consensus 625 AA----~elI~NL~~~~e~-i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts~~~~ia~~l 692 (778)
T 3opb_A 625 ST----LELISNMMSHPLT-IAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIATTIPLIAKEL 692 (778)
T ss_dssp HH----HHHHHHHHTSGGG-TGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HH----HHHHHHHhCCcHH-HHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 87 6777777776663 2 2222 12348899999985 67899999999999995 566554444
No 55
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.14 E-value=1.5e-11 Score=115.33 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=63.1
Q ss_pred CCCCCcccccccchhccCCcc-cCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHh
Q 041480 642 TSIPQDFICPLTGQLFEEPVT-LESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSE 714 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm~DPVt-l~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~ 714 (1122)
..+.+++.||||+++|.+||+ ++|||+||+.||..|+.....+||+|++++.... +.+|+.+..+++....-
T Consensus 17 ~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~-l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 17 ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE-LVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG-CEECTTHHHHHHHHHHH
T ss_pred ccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH-hHhhHHHHHHHHHHHHH
Confidence 345788999999999999999 9999999999999999987689999999998887 48898888888776543
No 56
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.14 E-value=6.5e-12 Score=112.52 Aligned_cols=66 Identities=24% Similarity=0.433 Sum_probs=57.5
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHh-----CCCCCCCCCCcCCCCCCCcchHHHHHH
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQ-----GNRTCPVTGKYLACPSLPLTNFILKRV 707 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~-----g~~tCP~trq~L~~~~ll~pN~~Lk~l 707 (1122)
...+.+++.||||.+.|.+||+++|||+||+.||..|+.. +...||+|++++.... +.+|..|+++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~-~~~n~~l~~~ 83 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN-LKPNLHVANI 83 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC-CEECSCCCSS
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh-CCcCHHHHHh
Confidence 4567889999999999999999999999999999999987 3678999999998877 4888766544
No 57
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=5.5e-11 Score=102.76 Aligned_cols=56 Identities=11% Similarity=0.290 Sum_probs=50.9
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCC
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPS 696 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ 696 (1122)
...+++++.||||++.|.+||+++|||+||+.||.+|+..+...||+|++++....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 45678899999999999999999999999999999999877889999999887655
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=9.9e-12 Score=119.55 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=62.2
Q ss_pred CCCCcccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHHHhc
Q 041480 643 SIPQDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWKSEN 715 (1122)
Q Consensus 643 ~ipeef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~~n 715 (1122)
.+.+++.||||+++|.+||++ +|||+||+.||..|+. ..||+|++++.... +.+|..|..+|+.+....
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~-~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQD-LKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSS-CCCCHHHHHHHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcccc-ccccHHHHHHHHHHHHHH
Confidence 346789999999999999999 9999999999999987 78999999998777 499999999999887643
No 59
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.11 E-value=5.3e-11 Score=105.49 Aligned_cols=61 Identities=18% Similarity=0.413 Sum_probs=50.9
Q ss_pred cCCCCCcccccccchhccCCcccC-CCcccchHHHHHHHHh-CCCCCCCCCCcCCCCCCCcch
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLE-SGQTFECEAIKEWIEQ-GNRTCPVTGKYLACPSLPLTN 701 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~-cGhTycRscIe~wl~~-g~~tCP~trq~L~~~~ll~pN 701 (1122)
...+++++.||||+++|.|||+++ |||+||+.||.+|+.. +..+||+|++++.....+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 456789999999999999999999 9999999999999986 447999999975433323444
No 60
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.11 E-value=2.5e-11 Score=116.89 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=64.2
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHH
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWK 712 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~ 712 (1122)
...++++|.||||.++|.+||+++|||+||+.||..|+..+..+||+|++++....+ .+|..+.+.|..+.
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~-~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL-FPDNFAKREILSLM 82 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC-EECHHHHHHHHTSE
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhc-ccCHHHHHHHccce
Confidence 567889999999999999999999999999999999999877799999999988774 89999999888754
No 61
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=9.8e-12 Score=111.35 Aligned_cols=66 Identities=20% Similarity=0.445 Sum_probs=57.3
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHh-----CCCCCCCCCCcCCCCCCCcchHHHHHH
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQ-----GNRTCPVTGKYLACPSLPLTNFILKRV 707 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~-----g~~tCP~trq~L~~~~ll~pN~~Lk~l 707 (1122)
...+.+++.||||.+.|.+||+++|||+||+.||..|+.. +...||+|++++.... +.+|+.|+++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~-~~~n~~l~~~ 83 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN-IRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS-CCCSCCCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh-cCccHHHHHh
Confidence 4567889999999999999999999999999999999986 4679999999998877 4788766544
No 62
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.10 E-value=1.4e-11 Score=117.82 Aligned_cols=71 Identities=20% Similarity=0.322 Sum_probs=61.7
Q ss_pred CCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC-------CCCCcchHHHHHHHHHHHH
Q 041480 642 TSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC-------PSLPLTNFILKRVIDGWKS 713 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~-------~~ll~pN~~Lk~lIe~w~~ 713 (1122)
....++|.||||.++|.+||+++|||+||+.||..|+..+..+||+|++++.. .. +.+|..|..+|+.|..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~-~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRN-SLVNVELWTIIQKHYP 87 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTT-CCBCHHHHHHHHHHSH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCcccccccccc-chhhHHHHHHHHHHCC
Confidence 34567899999999999999999999999999999998878899999998763 34 3688999999988853
No 63
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=5.6e-11 Score=106.79 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=55.2
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHH
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVID 709 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe 709 (1122)
.....+++.||||++.|.+||+++|||+||+.||.+|+.. ..+||+|++++. .. +.+|..|...++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~-~~~~~~l~~~~~ 74 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GI-FNPAKELMAKLQ 74 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SC-CEECHHHHHHHS
T ss_pred cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-cc-CCcHHHHHHHHH
Confidence 3456788999999999999999999999999999999975 679999999997 34 478865554443
No 64
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=4.1e-11 Score=113.37 Aligned_cols=69 Identities=16% Similarity=0.306 Sum_probs=60.3
Q ss_pred CCCcccccccchhccCCcccCCCcccchHHHHHHHHhC--CCCCCCCCCcCCCCCCCcchHHHHHHHHHHHH
Q 041480 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQG--NRTCPVTGKYLACPSLPLTNFILKRVIDGWKS 713 (1122)
Q Consensus 644 ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g--~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~~ 713 (1122)
+.+.+.||||.+.|.+||+++|||+||+.||..|+..+ ..+||+|++++.... +.+|..+..+++.+..
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~-~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS-LQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT-CBCCCSSSHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh-cCccHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999853 468999999999887 4888888888887764
No 65
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.07 E-value=4.2e-11 Score=118.50 Aligned_cols=65 Identities=23% Similarity=0.526 Sum_probs=54.3
Q ss_pred CCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHH
Q 041480 644 IPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWK 712 (1122)
Q Consensus 644 ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~ 712 (1122)
+.+++.||||.++|.|||+++|||+||+.||..|+.. ..+||+|++++... .+|..+...|+.+.
T Consensus 50 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~---~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK---TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE---EECHHHHHHHHHHH
T ss_pred ccccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC---CCccchhHHHHHHH
Confidence 3567899999999999999999999999999999975 67899999988653 35666666666654
No 66
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.02 E-value=6.8e-11 Score=113.21 Aligned_cols=69 Identities=12% Similarity=0.175 Sum_probs=58.6
Q ss_pred CCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHH
Q 041480 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGW 711 (1122)
Q Consensus 643 ~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w 711 (1122)
.+++++.||||.++|.|||+++|||+||+.||.+|+..+..+||+|++++....+..++..+..+|..+
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 456789999999999999999999999999999999987789999999998766434566666666544
No 67
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2.6e-10 Score=100.35 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=52.1
Q ss_pred cCCCCCcccccccchhccCCccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcch
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTN 701 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN 701 (1122)
...+.+++.||||++.|.|||++ +|||+||+.||.+|+.. ..+||+|++++....+ .+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~-~~~ 68 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQP-LSG 68 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCS-CCC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccc-ccc
Confidence 45678999999999999999997 99999999999999976 6799999999987763 444
No 68
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.01 E-value=9.3e-09 Score=114.08 Aligned_cols=142 Identities=15% Similarity=0.083 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHH-HhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhh
Q 041480 782 KLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLE-LLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELV 860 (1122)
Q Consensus 782 s~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~-LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~ 860 (1122)
+.+.+..|+..|..++. +.++.+.+...|++++||. +|.+++...|+.|+.+|.+++..+.. .. ..|.+ .
T Consensus 53 ~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~--~~---~~vv~---~ 123 (296)
T 1xqr_A 53 DQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA--IQ---EQVLG---L 123 (296)
T ss_dssp HHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHH--HH---HHHHH---T
T ss_pred CHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH--HH---HHHHH---C
Confidence 45778888889988876 5568888899999999999 99999999999999999999854331 11 11232 4
Q ss_pred hhHHHHHHHhhcC-CcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhc
Q 041480 861 NAMHVLLLYLQRS-PPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGG 934 (1122)
Q Consensus 861 gaI~~Ll~lLqsg-s~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag 934 (1122)
|++++|+.+|++. ++..+..|+.+|-+|+....+....+...|++++|+.+|.++.. ++|..|+.||.+|+.
T Consensus 124 g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~--~v~~~A~~aLs~L~~ 196 (296)
T 1xqr_A 124 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ--KLKVKSAFLLQNLLV 196 (296)
T ss_dssp THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHHh
Confidence 8999999999975 66789999999999988656667788899999999999998654 799999999999985
No 69
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=3e-10 Score=99.52 Aligned_cols=56 Identities=23% Similarity=0.538 Sum_probs=49.9
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHh--CCCCCCCCCCcCCCCC
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQ--GNRTCPVTGKYLACPS 696 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~--g~~tCP~trq~L~~~~ 696 (1122)
...+.+++.||||++.|.+||+++|||+||+.||..|+.. +...||+|++++....
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 4567889999999999999999999999999999999973 5679999999887654
No 70
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.95 E-value=3e-10 Score=115.70 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=63.6
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcchHHHHHHHHHHH
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTNFILKRVIDGWK 712 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN~~Lk~lIe~w~ 712 (1122)
...++++|.||||.++|.+||+++|||+||+.||.+|+..+..+||+|+.++....+ .+|..+.+.|..+.
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~-~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL-FPDNFAKREILSLM 82 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC-EECHHHHHHHHTSE
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhh-hhhHHHHHHHhhcc
Confidence 457899999999999999999999999999999999999777799999999988774 78988888887643
No 71
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=5.6e-10 Score=95.47 Aligned_cols=48 Identities=27% Similarity=0.657 Sum_probs=43.8
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHh--CCCCCCCC
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQ--GNRTCPVT 688 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~--g~~tCP~t 688 (1122)
...+.+++.||||++.|.+||+++|||+||+.||.+|+.. +..+||+|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567899999999999999999999999999999999985 56789987
No 72
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.94 E-value=1e-10 Score=116.75 Aligned_cols=68 Identities=12% Similarity=0.335 Sum_probs=56.8
Q ss_pred CCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC---------CCCCcchHHHHHHHHH
Q 041480 642 TSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC---------PSLPLTNFILKRVIDG 710 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~---------~~ll~pN~~Lk~lIe~ 710 (1122)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||+|++++.. .. +.||..+++.|..
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~-~~~d~~~~~~i~~ 102 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSS-AFPDNAARREVES 102 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGG-CEECHHHHHHHHT
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhh-hcccHHHHHHHcc
Confidence 46789999999999999999999999999999999998877899999986532 22 2477777776664
No 73
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=5.2e-10 Score=96.33 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=48.8
Q ss_pred Ccccccccch-hccCC----cccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcch
Q 041480 646 QDFICPLTGQ-LFEEP----VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTN 701 (1122)
Q Consensus 646 eef~CPIc~e-lm~DP----Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN 701 (1122)
+++.||||++ +|.+| |+++|||+||+.||.+|+.++...||+|++++....+ .++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~-~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF-RVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC-EEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc-eee
Confidence 6789999999 99999 4689999999999999998878899999999987773 554
No 74
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.3e-09 Score=89.66 Aligned_cols=48 Identities=29% Similarity=0.627 Sum_probs=43.5
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHh--CCCCCCCC
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQ--GNRTCPVT 688 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~--g~~tCP~t 688 (1122)
...+.+++.||||++.|.+||+++|||+||+.||.+|+.. +..+||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567889999999999999999999999999999999875 67789987
No 75
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=3.4e-09 Score=95.79 Aligned_cols=55 Identities=22% Similarity=0.457 Sum_probs=49.0
Q ss_pred cCCCCCcccccccchhccC----CcccCCCcccchHHHHHHHHhC--CCCCCCCCCcCCCC
Q 041480 641 LTSIPQDFICPLTGQLFEE----PVTLESGQTFECEAIKEWIEQG--NRTCPVTGKYLACP 695 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~D----PVtl~cGhTycRscIe~wl~~g--~~tCP~trq~L~~~ 695 (1122)
...+.+++.||||.+.|.+ |++++|||+||+.||.+|+... ..+||+|++++...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4567889999999999999 9999999999999999999874 57999999987654
No 76
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.80 E-value=1.5e-09 Score=94.44 Aligned_cols=57 Identities=19% Similarity=0.373 Sum_probs=49.7
Q ss_pred CCCCcccccccchhccCC-------cccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcch
Q 041480 643 SIPQDFICPLTGQLFEEP-------VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTN 701 (1122)
Q Consensus 643 ~ipeef~CPIc~elm~DP-------Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN 701 (1122)
...+++.||||.+.|.+| ++++|||+||+.||.+|+.. ..+||+|++++....+ .++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~-~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY-HPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSC-CCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhhe-eec
Confidence 446789999999999999 88999999999999999986 4699999999987763 554
No 77
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=4.9e-09 Score=90.39 Aligned_cols=53 Identities=21% Similarity=0.399 Sum_probs=47.2
Q ss_pred cCCCCCcccccccchhccCC-------cccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 641 LTSIPQDFICPLTGQLFEEP-------VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DP-------Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
...+.+++.||||++.|.+| |+++|||+||+.||..|+.. ..+||+|++++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 44568899999999999998 88999999999999999987 6799999998754
No 78
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=3.5e-09 Score=92.85 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=45.7
Q ss_pred CCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 643 SIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 643 ~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
...+++.||||++.|.+||+++|||+||+.||..|+.. ..+||+|++++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 44678999999999999999999999999999999875 4799999997754
No 79
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.68 E-value=1.3e-08 Score=91.79 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=48.0
Q ss_pred CCCCCcccccccchhc--cCCcccC--CCcccchHHHHHHHHhCCCCCCCCCCcCCCCCC
Q 041480 642 TSIPQDFICPLTGQLF--EEPVTLE--SGQTFECEAIKEWIEQGNRTCPVTGKYLACPSL 697 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm--~DPVtl~--cGhTycRscIe~wl~~g~~tCP~trq~L~~~~l 697 (1122)
..+.+++.||||.+.| .||++.+ |||+||+.||.++|..+...||.||+++....+
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 4467899999999999 4677766 999999999999998778899999999876653
No 80
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.67 E-value=5e-09 Score=89.01 Aligned_cols=50 Identities=22% Similarity=0.457 Sum_probs=45.7
Q ss_pred CcccccccchhccCC-------cccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCC
Q 041480 646 QDFICPLTGQLFEEP-------VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPS 696 (1122)
Q Consensus 646 eef~CPIc~elm~DP-------Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ 696 (1122)
+++.||||.+.|.+| ++++|||+||+.||.+|+.. ..+||+|++++....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccc
Confidence 578999999999998 78899999999999999987 679999999988766
No 81
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.57 E-value=3.1e-08 Score=87.97 Aligned_cols=58 Identities=26% Similarity=0.474 Sum_probs=48.2
Q ss_pred CCCCCcccccccchhccCCc---ccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcch
Q 041480 642 TSIPQDFICPLTGQLFEEPV---TLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTN 701 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm~DPV---tl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN 701 (1122)
....+++.||||++.|.+|+ +++|||.||+.||.+|+.. ..+||+|++++....+ .+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~-~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNT-ATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCS-CCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCccc-CCC
Confidence 44577899999999998874 4699999999999999975 5799999999887663 443
No 82
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.52 E-value=7.6e-06 Score=98.88 Aligned_cols=305 Identities=17% Similarity=0.106 Sum_probs=193.4
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcC--CCHHHHHHHHHHHHHhhhcchhh--------------
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFES--GKLEEKARVAALMCCCIEADAGC-------------- 803 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~s--gs~Eek~~AaalL~~La~~D~sn-------------- 803 (1122)
.+|+..|+.+.+.. + .-+..+|++.|+..|+. .+.|.-..++.+|.++...++..
T Consensus 40 R~Av~~Lk~~sk~y--------~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~ 110 (651)
T 3grl_A 40 RNAVRALKSLSKKY--------R-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLG 110 (651)
T ss_dssp HHHHHHHHHTTTTT--------T-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHH
T ss_pred HHHHHHHHHHHHHh--------H-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHH
Confidence 45666666664322 2 33557889999999975 45666666777776544333221
Q ss_pred ----HHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHH
Q 041480 804 ----RNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRP 879 (1122)
Q Consensus 804 ----R~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~ 879 (1122)
-..|.+.+.|+.|+.+|.+.+-..|.+|+.+|..|+...... + ...|. .+.++|+.|+.+|......-+-
T Consensus 111 ~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~-~---Q~~Il--~~p~gi~~Lv~lL~d~rE~iRn 184 (651)
T 3grl_A 111 SQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ-V---QQIIL--VSPMGVSRLMDLLADSREVIRN 184 (651)
T ss_dssp HHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH-H---HHHHH--HSTTHHHHHHGGGGCSSHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH-H---HHHHH--hCcccHHHHHHHHhCchHHHHH
Confidence 123456688999999999999999999999999997443321 1 22223 1458999999999988778888
Q ss_pred HHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCC--ChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhcccccccc
Q 041480 880 LFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLT--DEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDR 957 (1122)
Q Consensus 880 lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~--~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~ 957 (1122)
.|..+|.+|+..+...+.-++-|||++.|+.++..... ...+.+.|..+|.+|...+ +.+...+ ++.|..+.
T Consensus 185 eallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N-----~sNQ~~F-rEt~~i~~ 258 (651)
T 3grl_A 185 DGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN-----NSNQNFF-KEGSYIQR 258 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC-----HHHHHHH-HHTTCGGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC-----HHHHHHH-HHcCCHHH
Confidence 89999999988766677777779999999999976432 2247889999999999753 3344444 44455454
Q ss_pred ccccCC----CCCCCCCCCCCCCCCchhHHhHHHHH-HHhHHHHhcCCch--------------hhHHHHHHhhc-cCCc
Q 041480 958 CEGNSL----DNDENDLPVDDSTPLDDEEQASEEWL-RKLSASLLGNRKR--------------SFLETVSKILG-SRNS 1017 (1122)
Q Consensus 958 ~~~~~~----~~~~~d~~~d~~~~~~~ee~~~~~w~-rk~a~~Lv~~G~~--------------~~L~aL~~~l~-s~~~ 1017 (1122)
+..+.. ...|. +-+.+..|. -.+.+.||..|+. -++..|...+. ++.+
T Consensus 259 L~~LL~~~~~~~~W~------------~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p 326 (651)
T 3grl_A 259 MKPWFEVGDENSGWS------------AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVP 326 (651)
T ss_dssp GGGGGCCCSCSSCCC------------HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCC
T ss_pred HHHHhCCCccccccH------------HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCC
Confidence 433211 12221 112333333 2233444444331 02344444443 4433
Q ss_pred -hhHHHHHHHHHHHHhhhccCCCchhhHh----------hHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCCcc
Q 041480 1018 -DLVSVCLTTVAWLSHALSAQPDAEFQLS----------AFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKIPE 1082 (1122)
Q Consensus 1018 -~l~~acL~t~aWl~~~L~~~~~t~~~~~----------A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~~ 1082 (1122)
.+...+|.|++=++ .-.+. .|.. ++.+++.-|+.|+.+......|+-|+.|+..|..+..
T Consensus 327 ~~i~~~Al~tla~~i---rgN~~--~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~ 397 (651)
T 3grl_A 327 ADILTETINTVSEVI---RGCQV--NQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ 397 (651)
T ss_dssp HHHHHHHHHHHHHHH---TTCHH--HHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHH---hCCHH--HHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH
Confidence 34455666666322 22211 1221 2345666688889888888899999999999998753
No 83
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.51 E-value=5.5e-08 Score=84.03 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=43.2
Q ss_pred CCcccccccchhccCC-cccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 645 PQDFICPLTGQLFEEP-VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 645 peef~CPIc~elm~DP-Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
.++..||||.+.+.+| ++++|||+||+.||..|+.. ..+||+|++++..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 3567899999999998 77899999999999999986 4799999998764
No 84
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.48 E-value=6.4e-08 Score=80.05 Aligned_cols=47 Identities=17% Similarity=0.329 Sum_probs=42.1
Q ss_pred CcccccccchhccC----CcccCCCcccchHHHHHHHHhCCCCCCCCCCcCC
Q 041480 646 QDFICPLTGQLFEE----PVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLA 693 (1122)
Q Consensus 646 eef~CPIc~elm~D----PVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~ 693 (1122)
++..||||++.|.+ |++++|||.|++.||.+|+..+ .+||+|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 56789999999976 7888999999999999999975 89999998764
No 85
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.48 E-value=3.3e-08 Score=83.21 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=41.2
Q ss_pred CCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
.+++.||||.+.|.+||+++|||+||+.||..| ...||+|++++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 567899999999999999999999999999883 6789999997754
No 86
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.46 E-value=4.1e-08 Score=94.62 Aligned_cols=51 Identities=22% Similarity=0.465 Sum_probs=46.6
Q ss_pred CCcccccccchhccCC-------cccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCC
Q 041480 645 PQDFICPLTGQLFEEP-------VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPS 696 (1122)
Q Consensus 645 peef~CPIc~elm~DP-------Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ 696 (1122)
++++.||||++.|.+| |+++|||+||+.||.+|+.. ..+||+|++.+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccc
Confidence 5789999999999999 89999999999999999985 469999999988766
No 87
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=2.6e-08 Score=86.64 Aligned_cols=54 Identities=15% Similarity=0.385 Sum_probs=47.5
Q ss_pred cCCCCCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCC
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPS 696 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ 696 (1122)
...+.+++.||||++.|.+ |+++|||+||+.||.+|+. ...+||+|++++....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 3456788999999999999 9999999999999999988 5789999999887543
No 88
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1.8e-07 Score=82.13 Aligned_cols=54 Identities=15% Similarity=0.367 Sum_probs=46.3
Q ss_pred cCCCCCcccccccchhccCCccc---CCCcccchHHHHHHHHhCCCCCCCCCCcCCCC
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTL---ESGQTFECEAIKEWIEQGNRTCPVTGKYLACP 695 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl---~cGhTycRscIe~wl~~g~~tCP~trq~L~~~ 695 (1122)
...+.++..||||++.|.+|+.+ +|||.|++.||.+|+.. ..+||+|++++...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 34567889999999999988665 99999999999999987 45999999987653
No 89
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.40 E-value=1.7e-07 Score=89.04 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=42.8
Q ss_pred CCcccccccchhccCCc------------------ccCCCcccchHHHHHHHHh----CCCCCCCCCCcCCC
Q 041480 645 PQDFICPLTGQLFEEPV------------------TLESGQTFECEAIKEWIEQ----GNRTCPVTGKYLAC 694 (1122)
Q Consensus 645 peef~CPIc~elm~DPV------------------tl~cGhTycRscIe~wl~~----g~~tCP~trq~L~~ 694 (1122)
+.+..||||++.|.+|+ +++|||.|++.||..|+.. ...+||+|+..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 45569999999999886 6799999999999999973 46799999997754
No 90
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.38 E-value=2.7e-07 Score=79.98 Aligned_cols=52 Identities=15% Similarity=0.382 Sum_probs=44.1
Q ss_pred CCCCcccccccchhcc---CCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCC
Q 041480 643 SIPQDFICPLTGQLFE---EPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACP 695 (1122)
Q Consensus 643 ~ipeef~CPIc~elm~---DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~ 695 (1122)
...++..||||++.|. +|++++|||.|++.||..|+.. ..+||+|++.+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 4467889999999884 5677899999999999999987 45799999988653
No 91
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.38 E-value=1.3e-07 Score=78.33 Aligned_cols=48 Identities=21% Similarity=0.496 Sum_probs=42.4
Q ss_pred CCCcccccccchhccC---CcccC-CCcccchHHHHHHHHhCCCCCCCCCCcC
Q 041480 644 IPQDFICPLTGQLFEE---PVTLE-SGQTFECEAIKEWIEQGNRTCPVTGKYL 692 (1122)
Q Consensus 644 ipeef~CPIc~elm~D---PVtl~-cGhTycRscIe~wl~~g~~tCP~trq~L 692 (1122)
+.++..||||.+.|.+ |++++ |||.|++.||.+|+.. ..+||+|++++
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 4567899999999988 78887 9999999999999975 67999999865
No 92
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.37 E-value=1.7e-07 Score=86.33 Aligned_cols=51 Identities=20% Similarity=0.500 Sum_probs=44.6
Q ss_pred CCCCcccccccchhccC---CcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 643 SIPQDFICPLTGQLFEE---PVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 643 ~ipeef~CPIc~elm~D---PVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
...++..||||++.|.+ +++++|||.|++.||..|+.. ..+||+|++++..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 34678899999999987 888999999999999999975 5699999997754
No 93
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=2.2e-07 Score=82.11 Aligned_cols=50 Identities=22% Similarity=0.481 Sum_probs=44.1
Q ss_pred CCCcccccccchhccCC---cccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 644 IPQDFICPLTGQLFEEP---VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 644 ipeef~CPIc~elm~DP---Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
..++..||||++.|.+| ++++|||.|++.||..|+.. +.+||+|++++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 35678999999999988 77899999999999999986 5799999998764
No 94
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.33 E-value=2.1e-07 Score=106.57 Aligned_cols=51 Identities=12% Similarity=0.249 Sum_probs=45.8
Q ss_pred CCcccccccchhccCCcccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCC
Q 041480 645 PQDFICPLTGQLFEEPVTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACP 695 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~ 695 (1122)
.....||||.+.+.+||+++|||+||..||..|+..+..+||+||+++...
T Consensus 330 ~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 345799999999999999999999999999999987788999999987653
No 95
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.29 E-value=1.4e-07 Score=83.86 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=41.4
Q ss_pred CCcccccccchhccCCcccCCCcc-cchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 645 PQDFICPLTGQLFEEPVTLESGQT-FECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl~cGhT-ycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
.+++.|+||.+.+.+||+++|||+ ||+.||..| ..||+|++++..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 567899999999999999999999 999999998 789999998764
No 96
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.17 E-value=4e-07 Score=84.08 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=48.8
Q ss_pred CCcccccccchhccCCccc---CCCcccchHHHHHHHHh----CC---CCCCC--CCCc--CCCCCCCcchHHHHHHHHH
Q 041480 645 PQDFICPLTGQLFEEPVTL---ESGQTFECEAIKEWIEQ----GN---RTCPV--TGKY--LACPSLPLTNFILKRVIDG 710 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl---~cGhTycRscIe~wl~~----g~---~tCP~--trq~--L~~~~ll~pN~~Lk~lIe~ 710 (1122)
.+.|.||||.+.+.+|+++ +|||+||+.||.+||.. |. ..||. |++. +.... ..+.....+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~--i~~ll~~~~~~k 80 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE--IECMVAAEIMQR 80 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH--HHHHSCHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH--HHHHCCHHHHHH
Confidence 3578999999999999875 79999999999999873 32 47999 9887 54432 223333455555
Q ss_pred HHH
Q 041480 711 WKS 713 (1122)
Q Consensus 711 w~~ 713 (1122)
|..
T Consensus 81 y~~ 83 (94)
T 1wim_A 81 YKK 83 (94)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 97
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=6.6e-07 Score=79.48 Aligned_cols=46 Identities=11% Similarity=0.163 Sum_probs=40.7
Q ss_pred CCcccccccchhccCCcccCCCcc-cchHHHHHHHHhCCCCCCCCCCcCCCC
Q 041480 645 PQDFICPLTGQLFEEPVTLESGQT-FECEAIKEWIEQGNRTCPVTGKYLACP 695 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl~cGhT-ycRscIe~wl~~g~~tCP~trq~L~~~ 695 (1122)
.+++.||||++.+.+||+++|||+ ||+.|+.. ...||+|++++...
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence 567899999999999999999999 99999964 37899999988654
No 98
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.08 E-value=6.1e-07 Score=86.37 Aligned_cols=55 Identities=20% Similarity=0.404 Sum_probs=47.8
Q ss_pred CCcccccccchhccCC-------cccCCCcccchHHHHHHHHhCCCCCCCCCCcCCCCCCCcch
Q 041480 645 PQDFICPLTGQLFEEP-------VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLACPSLPLTN 701 (1122)
Q Consensus 645 peef~CPIc~elm~DP-------Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~~~ll~pN 701 (1122)
++.+.||||++.|.+| |+++|||+||..||.+|+.. ..+||+|+..+....+ .|+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~-~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY-HPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGE-EEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcc-eee
Confidence 5678899999999988 88899999999999999986 5699999999887663 443
No 99
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=3.4e-06 Score=76.12 Aligned_cols=48 Identities=19% Similarity=0.400 Sum_probs=39.5
Q ss_pred CcccccccchhccC--------------Cccc-CCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 646 QDFICPLTGQLFEE--------------PVTL-ESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 646 eef~CPIc~elm~D--------------PVtl-~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
++-.|+||++-|.+ ++++ +|||.|.+.||.+|+.. +.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 45679999988877 4455 59999999999999986 4699999997753
No 100
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.91 E-value=0.00061 Score=69.56 Aligned_cols=123 Identities=16% Similarity=0.069 Sum_probs=94.5
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccch
Q 041480 768 IGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDV 847 (1122)
Q Consensus 768 aGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~ 847 (1122)
.++++.|+.+|...+...+..++..|..+. ....++.|+.+|...+...|..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~-----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 367888999998888888888888876442 1346889999999888889999998887752
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHH
Q 041480 848 STLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCR 927 (1122)
Q Consensus 848 ~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~ 927 (1122)
...+++.|+.+|+..++..+..|+.+|..+. ..++++.|+.+|.+... .+|..|+.
T Consensus 79 -----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~--~vr~~a~~ 134 (211)
T 3ltm_A 79 -----------DERAVEPLIKALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDW--FVRIAAAF 134 (211)
T ss_dssp -----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSH--HHHHHHHH
T ss_pred -----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCH--HHHHHHHH
Confidence 1246678888888878888888887777652 24688999999876543 68888888
Q ss_pred HHHHhh
Q 041480 928 ALLILG 933 (1122)
Q Consensus 928 AL~~La 933 (1122)
+|..++
T Consensus 135 aL~~~~ 140 (211)
T 3ltm_A 135 ALGEIG 140 (211)
T ss_dssp HHHHHC
T ss_pred HHHHcC
Confidence 888885
No 101
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.83 E-value=2.6e-06 Score=96.63 Aligned_cols=46 Identities=15% Similarity=0.251 Sum_probs=41.9
Q ss_pred CCCcccccccchhccCCcccCCCcc-cchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 644 IPQDFICPLTGQLFEEPVTLESGQT-FECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 644 ipeef~CPIc~elm~DPVtl~cGhT-ycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
+.+++.||||.+.+.+||+++|||+ ||+.||..| ..||+||+++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 3567999999999999999999999 999999988 689999998764
No 102
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.81 E-value=7.5e-06 Score=70.58 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=42.5
Q ss_pred CcccccccchhccCCccc--CCCcc-cchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 646 QDFICPLTGQLFEEPVTL--ESGQT-FECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 646 eef~CPIc~elm~DPVtl--~cGhT-ycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
.+..|+||.+-++|||++ +|||. ||..|+.+|+.. +..||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 456899999999999988 99998 999999999876 4789999998753
No 103
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.80 E-value=8.6e-06 Score=70.43 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=43.2
Q ss_pred CCcccccccchhccCCccc--CCCcc-cchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 645 PQDFICPLTGQLFEEPVTL--ESGQT-FECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl--~cGhT-ycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
.++..|+||.+-+.|+|++ +|||. ||..|+..|+.. +..||+||+++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 4567899999999999988 99999 899999999874 5789999998753
No 104
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.76 E-value=4.3e-06 Score=75.42 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=40.4
Q ss_pred CCcccccccchhccCCcccCCCcc-cchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 645 PQDFICPLTGQLFEEPVTLESGQT-FECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl~cGhT-ycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
.++..|+||.+.+.|||+++|||. ||..|+..|+ .||+|++++..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 456789999999999999999999 9999998873 89999998764
No 105
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.73 E-value=1.5e-05 Score=75.88 Aligned_cols=46 Identities=13% Similarity=0.337 Sum_probs=39.1
Q ss_pred cccccccchhccCC------------------cccCCCcccchHHHHHHHHhCCCCCCCCCCcCC
Q 041480 647 DFICPLTGQLFEEP------------------VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLA 693 (1122)
Q Consensus 647 ef~CPIc~elm~DP------------------Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~ 693 (1122)
+-.|+||++-|.+| ++++|||.|.+.||..|+.. +.+||+|++.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 45699999999877 34699999999999999986 789999999753
No 106
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.72 E-value=0.0019 Score=65.41 Aligned_cols=122 Identities=16% Similarity=0.074 Sum_probs=93.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVS 848 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~ 848 (1122)
+..+.++.+|.+.+...+..++..|..+. ....++.|+.+|...+...|..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcC-----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 56788899999889888888888886443 1246789999998888889999988887652
Q ss_pred HHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHH
Q 041480 849 TLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRA 928 (1122)
Q Consensus 849 ~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~A 928 (1122)
...+++.|+.+|....+..+..|+.+|.++. ..++++.|+.+|.+.. ..+|..|+.+
T Consensus 74 ----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~--~~vr~~a~~a 130 (201)
T 3ltj_A 74 ----------DERAVEPLIKALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDED--WFVRIAAAFA 130 (201)
T ss_dssp ----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSS--HHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHcCCC--HHHHHHHHHH
Confidence 1245678888888877778888888777652 2457899999987654 3688888888
Q ss_pred HHHhh
Q 041480 929 LLILG 933 (1122)
Q Consensus 929 L~~La 933 (1122)
|..++
T Consensus 131 L~~~~ 135 (201)
T 3ltj_A 131 LGEIG 135 (201)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 88886
No 107
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.68 E-value=0.0029 Score=67.44 Aligned_cols=206 Identities=10% Similarity=0.027 Sum_probs=113.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHH-----HhhcCChhHHHHHHHHHHHHHcccCc
Q 041480 770 GLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLE-----LLHSKQVKPRTNTVLLLIDLICLSRR 844 (1122)
Q Consensus 770 aIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~-----LL~SGs~~aRenAv~aL~eLs~~~~~ 844 (1122)
+++.|+.+|...+...+..++..|..+.... ..++.++. ++...+...|..|+.+|..+......
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~----------~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~ 124 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKICK----------KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI 124 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT----------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcccc----------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc
Confidence 4566666666555555555555554432111 01222222 23445566666666666665311100
Q ss_pred cchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHH
Q 041480 845 RDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEK 924 (1122)
Q Consensus 845 k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~ 924 (1122)
....+++.|+.++++.++..+..|+.+|.++. ..++++.|+.+|.+... .+|..
T Consensus 125 -------------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~--~vr~~ 178 (280)
T 1oyz_A 125 -------------YSPKIVEQSQITAFDKSTNVRRATAFAISVIN-----------DKATIPLLINLLKDPNG--DVRNW 178 (280)
T ss_dssp -------------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSH--HHHHH
T ss_pred -------------ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHcCCCH--HHHHH
Confidence 01245677888888777777777777777552 24589999999886543 58888
Q ss_pred HHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHhcCCchhh
Q 041480 925 CCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRKRSF 1004 (1122)
Q Consensus 925 Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~~~ 1004 (1122)
|+.+|..++.. .+.....|++. +. |. +.+ .....+.+|-..|....
T Consensus 179 a~~aL~~~~~~-----~~~~~~~L~~~------l~-------------d~-----~~~-----vR~~A~~aL~~~~~~~~ 224 (280)
T 1oyz_A 179 AAFAININKYD-----NSDIRDCFVEM------LQ-------------DK-----NEE-----VRIEAIIGLSYRKDKRV 224 (280)
T ss_dssp HHHHHHHHTCC-----CHHHHHHHHHH------TT-------------CS-----CHH-----HHHHHHHHHHHTTCGGG
T ss_pred HHHHHHhhccC-----cHHHHHHHHHH------hc-------------CC-----CHH-----HHHHHHHHHHHhCCHhh
Confidence 88888887521 12122222111 00 00 011 12234456666677778
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCC
Q 041480 1005 LETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGE 1062 (1122)
Q Consensus 1005 L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~ 1062 (1122)
+..|.+.+.+.. +...+..++.++ .+ ..++|.|.++|+...
T Consensus 225 ~~~L~~~l~d~~--vr~~a~~aL~~i-------~~--------~~~~~~L~~~l~~~~ 265 (280)
T 1oyz_A 225 LSVLCDELKKNT--VYDDIIEAAGEL-------GD--------KTLLPVLDTMLYKFD 265 (280)
T ss_dssp HHHHHHHHTSSS--CCHHHHHHHHHH-------CC--------GGGHHHHHHHHTTSS
T ss_pred HHHHHHHhcCcc--HHHHHHHHHHhc-------Cc--------hhhhHHHHHHHhcCC
Confidence 888888888754 555543333322 12 246788888887544
No 108
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.65 E-value=0.00014 Score=88.88 Aligned_cols=160 Identities=14% Similarity=0.160 Sum_probs=118.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHH-HhhcCChhHHHHHHHHHHHHHcccCccch
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLE-LLHSKQVKPRTNTVLLLIDLICLSRRRDV 847 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~-LL~SGs~~aRenAv~aL~eLs~~~~~k~~ 847 (1122)
..|.+|+..|.+.+.++|..|+.+|.+++. |.++|..+...+.|.+++. +|...+...|+.|+.+|.+|+...... +
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d-~ 111 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD-F 111 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH-H
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch-H
Confidence 456677888999999999999999999986 8899999999999888766 677788999999999999998665433 3
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHhhcC--------Cc------c-------hHHHHHHHHHhhccCCChhhhhhhhhccHH
Q 041480 848 STLLRNVQNEELVNAMHVLLLYLQRS--------PP------E-------QRPLFSILLLHLDLLVEPRKYSIYREAAVD 906 (1122)
Q Consensus 848 ~~~L~~I~~eG~~gaI~~Ll~lLqsg--------s~------~-------~k~lAA~aLlnLsll~EpnK~sIvReGAV~ 906 (1122)
+.. +.+ .|++.+|+.+++.. .+ . -...+..+|.+||...+.....+...+.++
T Consensus 112 ~~~---l~~---~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~ 185 (684)
T 4gmo_A 112 CVH---LYR---LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTIL 185 (684)
T ss_dssp HHH---HHH---TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHH
T ss_pred HHH---HHH---cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHH
Confidence 221 122 36777777776532 00 0 112345567778765444566788899999
Q ss_pred HHHHHHhccC-CChHHHHHHHHHHHHhhcCC
Q 041480 907 AITVALEESL-TDEKIQEKCCRALLILGGRF 936 (1122)
Q Consensus 907 aLV~LL~~g~-~~~~~qe~Aa~AL~~Lag~f 936 (1122)
.|+.+|.... .+...+..|+.+|+.|+..+
T Consensus 186 ~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn 216 (684)
T 4gmo_A 186 RLLFRLISADIAPQDIYEEAISCLTTLSEDN 216 (684)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHhccC
Confidence 9999995543 33468899999999998653
No 109
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.64 E-value=0.00061 Score=82.53 Aligned_cols=183 Identities=9% Similarity=0.097 Sum_probs=128.6
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHhh-ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHH
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLISI-GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLEL 819 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~Iasa-GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~L 819 (1122)
.++..|..|+..- ..++..+|... |||+.||.+|+......|..++.+|..+...+.+.++.++-+|+++.|+.+
T Consensus 141 ~alqlL~~L~~~r----~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~I 216 (651)
T 3grl_A 141 PGVKLLTSLLKQL----GPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDI 216 (651)
T ss_dssp HHHHHHHHHHHHS----HHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHhcC----cHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHH
Confidence 3555677776543 22467788855 999999999998777788889999999998888889889999999999999
Q ss_pred hhcCC----hhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcc-----hH-HH--HHHHHHh
Q 041480 820 LHSKQ----VKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPE-----QR-PL--FSILLLH 887 (1122)
Q Consensus 820 L~SGs----~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~-----~k-~l--AA~aLln 887 (1122)
+.... ...-..++.+|.+|+..+. .+..++ ++. |.|+.|..+++.+... |+ .. .+..+.+
T Consensus 217 i~~Eg~~~Ggivv~DCL~ll~nLLr~N~--sNQ~~F---rEt---~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIr 288 (651)
T 3grl_A 217 ITEEGNSDGGIVVEDCLILLQNLLKNNN--SNQNFF---KEG---SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVR 288 (651)
T ss_dssp HHHHTGGGSHHHHHHHHHHHHHHHTTCH--HHHHHH---HHT---TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCccchhHHHHHHHHHHHHhcCH--HHHHHH---HHc---CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHH
Confidence 97622 3577889999999986532 222223 333 5667777777654322 12 11 1222222
Q ss_pred h-ccCC------ChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcC
Q 041480 888 L-DLLV------EPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGR 935 (1122)
Q Consensus 888 L-sll~------EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~ 935 (1122)
+ .... ..|+..+.+.|.++.|+.++.....+...+..|..++..+...
T Consensus 289 lLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irg 343 (651)
T 3grl_A 289 VLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRG 343 (651)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhC
Confidence 2 2211 1367789999999999999987665567888888888888753
No 110
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=4e-05 Score=67.19 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=40.8
Q ss_pred CCcccccccchhccCCcccCCCcc-cchHHHHHHHHhCCCCCCCCCCcCCCC
Q 041480 645 PQDFICPLTGQLFEEPVTLESGQT-FECEAIKEWIEQGNRTCPVTGKYLACP 695 (1122)
Q Consensus 645 peef~CPIc~elm~DPVtl~cGhT-ycRscIe~wl~~g~~tCP~trq~L~~~ 695 (1122)
.++..|+||++-+.|||+++|||. ||..|+.. ...||+|++++...
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 567899999999999999999999 99999984 47899999987653
No 111
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=0.00017 Score=65.42 Aligned_cols=52 Identities=15% Similarity=0.305 Sum_probs=43.4
Q ss_pred CCcccccccchhc--cCCcccCCC-----cccchHHHHHHHHh-CCCCCCCCCCcCCCCC
Q 041480 645 PQDFICPLTGQLF--EEPVTLESG-----QTFECEAIKEWIEQ-GNRTCPVTGKYLACPS 696 (1122)
Q Consensus 645 peef~CPIc~elm--~DPVtl~cG-----hTycRscIe~wl~~-g~~tCP~trq~L~~~~ 696 (1122)
.++-.|+||++-+ .+|++++|+ |.|-+.||.+|+.. +..+||+|++.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 4567899999877 578989996 99999999999986 4579999999886543
No 112
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.39 E-value=0.003 Score=64.43 Aligned_cols=124 Identities=14% Similarity=-0.018 Sum_probs=80.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVS 848 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~ 848 (1122)
++++.|+.+|...+...+..++..|..+. ....++.|+.+|...+...|..|+.+|..+.
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------- 140 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVRIAAAFALGEIG--------- 140 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------
Confidence 35666777776666666666666555432 1235667777776666777777777766641
Q ss_pred HHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHH
Q 041480 849 TLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRA 928 (1122)
Q Consensus 849 ~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~A 928 (1122)
...+++.|+.+++...+..+..|+.+|.++. ..++++.|..+|..... .+|..|..+
T Consensus 141 ----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~--~vr~~A~~a 197 (211)
T 3ltm_A 141 ----------DERAVEPLIKALKDEDGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTG--FARKVAVNY 197 (211)
T ss_dssp ----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------SHHHHHHHHHHHHHCCH--HHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------chhHHHHHHHHHhCCCH--HHHHHHHHH
Confidence 1245677778887777777777777777652 25578888888876553 588888888
Q ss_pred HHHhhcC
Q 041480 929 LLILGGR 935 (1122)
Q Consensus 929 L~~Lag~ 935 (1122)
|..+.+.
T Consensus 198 L~~~~~~ 204 (211)
T 3ltm_A 198 LETHKSF 204 (211)
T ss_dssp HHC----
T ss_pred HHhcCCC
Confidence 8888764
No 113
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.29 E-value=0.0051 Score=62.20 Aligned_cols=123 Identities=14% Similarity=-0.020 Sum_probs=79.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVS 848 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~ 848 (1122)
.+++.|+.+|...+...+..++..|..+. ....++.|+.+|...+...|..|+.+|..+.
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------- 135 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVRIAAAFALGEIG--------- 135 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 45677777776666666666666665432 1235667777777677777777777776652
Q ss_pred HHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHH
Q 041480 849 TLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRA 928 (1122)
Q Consensus 849 ~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~A 928 (1122)
...+++.|+.+++..++..+..|+.+|..+ ....+++.|..+|..... .+|..|..+
T Consensus 136 ----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~-----------~~~~~~~~L~~~l~d~~~--~vr~~A~~a 192 (201)
T 3ltj_A 136 ----------DERAVEPLIKALKDEDGWVRQSAADALGEI-----------GGERVRAAMEKLAETGTG--FARKVAVNY 192 (201)
T ss_dssp ----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-----------CSHHHHHHHHHHHHHCCH--HHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------CchhHHHHHHHHHhCCCH--HHHHHHHHH
Confidence 124556777777766666677777777655 124577888888866543 578888888
Q ss_pred HHHhhc
Q 041480 929 LLILGG 934 (1122)
Q Consensus 929 L~~Lag 934 (1122)
|..|..
T Consensus 193 L~~l~~ 198 (201)
T 3ltj_A 193 LETHKS 198 (201)
T ss_dssp HHHCC-
T ss_pred HHHHHh
Confidence 877764
No 114
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.26 E-value=4.2e-05 Score=74.25 Aligned_cols=45 Identities=16% Similarity=0.420 Sum_probs=0.0
Q ss_pred ccccccchhccCC-----------------cc-cCCCcccchHHHHHHHHhCCCCCCCCCCcCC
Q 041480 648 FICPLTGQLFEEP-----------------VT-LESGQTFECEAIKEWIEQGNRTCPVTGKYLA 693 (1122)
Q Consensus 648 f~CPIc~elm~DP-----------------Vt-l~cGhTycRscIe~wl~~g~~tCP~trq~L~ 693 (1122)
=.|+||++-|.+| |+ ++|||.|.+.||..|+.. +.+||+|++++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 3799999999875 22 499999999999999986 679999998653
No 115
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.17 E-value=0.03 Score=59.52 Aligned_cols=95 Identities=12% Similarity=0.074 Sum_probs=56.2
Q ss_pred ccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhc
Q 041480 810 NINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLD 889 (1122)
Q Consensus 810 ~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLs 889 (1122)
.+.++.|+.+|...+...|..|+.+|..+. .-.+++.|+.+|++..+..+..|+.+|.++.
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~-------------------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRG-------------------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHC-------------------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccC-------------------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 456777888887777777777777776652 1135566777777666666777777776654
Q ss_pred cCCChhhhhhhhhccHHHHHHHHhc---cCCChHHHHHHHHHHHHhh
Q 041480 890 LLVEPRKYSIYREAAVDAITVALEE---SLTDEKIQEKCCRALLILG 933 (1122)
Q Consensus 890 ll~EpnK~sIvReGAV~aLV~LL~~---g~~~~~~qe~Aa~AL~~La 933 (1122)
... .+++.++.+|.. ...+..+|..|+.+|..++
T Consensus 83 ~~~----------~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~ 119 (280)
T 1oyz_A 83 ICK----------KCEDNVFNILNNMALNDKSACVRATAIESTAQRC 119 (280)
T ss_dssp CCT----------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred ccc----------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 211 123333333310 1122357777777777776
No 116
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.66 E-value=0.076 Score=65.74 Aligned_cols=292 Identities=12% Similarity=0.046 Sum_probs=166.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHh--ccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccc
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMAR--NINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRD 846 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae--~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~ 846 (1122)
+.++.|+..|...+.+.|..++..|..++.... . .+.. ...++.++.++..++...|..|+.+|..|+.....
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~--~-~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~-- 248 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT--Q-ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD-- 248 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC--H-HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc--H-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH--
Confidence 456778888887788888888888876654221 1 1111 13567888888888899999999999998743211
Q ss_pred hHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhh--hhhhccHHHHHHHHh----------c
Q 041480 847 VSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYS--IYREAAVDAITVALE----------E 914 (1122)
Q Consensus 847 ~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~s--IvReGAV~aLV~LL~----------~ 914 (1122)
++... .-+.++.++..++...+..+..|+..+..++... ..+.. -+-...++.|+..|. .
T Consensus 249 ---~~~~~----l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~ 320 (852)
T 4fdd_A 249 ---RLLPH----MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG 320 (852)
T ss_dssp ---HHGGG----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC
T ss_pred ---HHHHH----HHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcC
Confidence 11110 1135566777777666666777777777776421 11111 111245666666652 1
Q ss_pred c--C--------CChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHh
Q 041480 915 S--L--------TDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQA 984 (1122)
Q Consensus 915 g--~--------~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~ 984 (1122)
. . .+-..+..|+.+|..|+..+ |+.... .+.+.+.....+.+|. .-.+
T Consensus 321 d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~---~~~~~~-------~l~~~l~~~l~~~~~~------------~R~a 378 (852)
T 4fdd_A 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVY---RDELLP-------HILPLLKELLFHHEWV------------VKES 378 (852)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHHH---GGGGHH-------HHHHHHHHHHTCSSHH------------HHHH
T ss_pred CcccccccccccccchHHHHHHHHHHHHHHhc---cHHHHH-------HHHHHHHHHhcCCCHH------------HHHH
Confidence 1 0 01135888999999998642 222111 1122222211111110 0111
Q ss_pred HHHHHHHhHHHH---hcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCC
Q 041480 985 SEEWLRKLSASL---LGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNG 1061 (1122)
Q Consensus 985 ~~~w~rk~a~~L---v~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~ 1061 (1122)
+-.++..++... +..=...++..|..++.+.++.+..++..++.-+...+.... ...-...+++.|+..|+.
T Consensus 379 a~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~----~~~~~~~ll~~L~~~L~d- 453 (852)
T 4fdd_A 379 GILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP----PDTYLKPLMTELLKRILD- 453 (852)
T ss_dssp HHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC----TTTTHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch----HHHHHHHHHHHHHHHHhC-
Confidence 222222222100 000012567888899999999999988666654444443221 222456789999999974
Q ss_pred CChhhHHHHHHHhhhhhCCcchhhhHHHHhhHhHHHhhhhc
Q 041480 1062 EQPQQKVLASMSLLNFSKIPECGAVLKTIAAEIRIPLQSLT 1102 (1122)
Q Consensus 1062 ~~~eer~LA~~aL~~~~~~~~~~~~L~~~a~gi~~~Lr~L~ 1102 (1122)
....-|.-|+.+|.+|+..- ...+..+-.++.+.|-.+.
T Consensus 454 ~~~~vr~~a~~aL~~l~~~~--~~~l~~~l~~ll~~L~~~l 492 (852)
T 4fdd_A 454 SNKRVQEAACSAFATLEEEA--CTELVPYLAYILDTLVFAF 492 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHH--GGGGGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh--hHhhHhHHHHHHHHHHHHH
Confidence 45678899999999998753 2345555566666555443
No 117
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.39 E-value=0.14 Score=63.26 Aligned_cols=284 Identities=13% Similarity=0.084 Sum_probs=160.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHH-------hccchHHHHHHhhcCChhHHHHHHHHHHHHHcc
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMA-------RNINVYSLLELLHSKQVKPRTNTVLLLIDLICL 841 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Ia-------e~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~ 841 (1122)
+.++.|+..+.+++...+..++.+|..+....+ ..+. -...++.|+.+|.+.+...|..|+.+|..+...
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~---~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA---EILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHT---THHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhH---HHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 567889999988888778877777766543221 1111 123467777778888889999999999876533
Q ss_pred cCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHH
Q 041480 842 SRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKI 921 (1122)
Q Consensus 842 ~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~ 921 (1122)
.... +.. -.-..++.|+..++...+..+..|+.+|.+|+.. .+....-+=.+.++.++.++.+.. +.+
T Consensus 205 ~~~~----~~~-----~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~-~~~~~~~~l~~l~~~l~~~~~~~~--~~v 272 (852)
T 4fdd_A 205 RTQA----LML-----HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV-RMDRLLPHMHNIVEYMLQRTQDQD--ENV 272 (852)
T ss_dssp TCHH----HHT-----SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH-CHHHHGGGHHHHHHHHHHHHTCSS--HHH
T ss_pred ccHH----HHH-----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHccCCc--HHH
Confidence 2211 111 0125677888888887888888888888888653 222222233457777888877543 468
Q ss_pred HHHHHHHHHHhhcCCCCCchhhhhhhhhcc--ccccccccccCCCC---------C-CCCCCCCCCCCCchhHHhHHHHH
Q 041480 922 QEKCCRALLILGGRFSFSREVANESWILKP--AGFNDRCEGNSLDN---------D-ENDLPVDDSTPLDDEEQASEEWL 989 (1122)
Q Consensus 922 qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~--AG~~~~~~~~~~~~---------~-~~d~~~d~~~~~~~ee~~~~~w~ 989 (1122)
+..|..++..++..- .....+ +. ..+.+.+...|... + ..|...|+....-.--.++..-+
T Consensus 273 r~~a~e~l~~l~~~~------~~~~~~-~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L 345 (852)
T 4fdd_A 273 ALEACEFWLTLAEQP------ICKDVL-VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAAL 345 (852)
T ss_dssp HHHHHHHHHHHTTST------THHHHH-TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcch------hHHHHH-HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHH
Confidence 999999999998631 111111 11 01111111112100 0 00000000000000011222233
Q ss_pred HHhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHH
Q 041480 990 RKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVL 1069 (1122)
Q Consensus 990 rk~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~L 1069 (1122)
..++..+=..-...++..|.+.+.+.+..+..+++.++. .....+++ .+. .-...++|.|+..|+ +....-|.-
T Consensus 346 ~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg---~i~~~~~~-~~~-~~l~~~l~~l~~~l~-d~~~~Vr~~ 419 (852)
T 4fdd_A 346 DVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLG---AIAEGCMQ-GMI-PYLPELIPHLIQCLS-DKKALVRSI 419 (852)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHH---HTTTTTHH-HHG-GGHHHHHHHHHHHTT-CSSHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH---HHHhcchH-HHH-HHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 334433211112356777888889999888888754333 33333332 233 234667899999997 556778888
Q ss_pred HHHHhhhhhCC
Q 041480 1070 ASMSLLNFSKI 1080 (1122)
Q Consensus 1070 A~~aL~~~~~~ 1080 (1122)
|+.+|-+|...
T Consensus 420 a~~~l~~l~~~ 430 (852)
T 4fdd_A 420 TCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888864
No 118
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.15 E-value=0.18 Score=60.23 Aligned_cols=141 Identities=12% Similarity=0.055 Sum_probs=96.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHH
Q 041480 770 GLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVST 849 (1122)
Q Consensus 770 aIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~ 849 (1122)
+.+.+++++.+.+.+.|.-+.-.+..++..+.+ .+ ...+..|..-|.+.+...|..|+.+|..+. ... +
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e---~~--~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~-~-- 118 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPD---MA--IMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDK-I-- 118 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHH---HH--HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGG-G--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCch---HH--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHH-H--
Confidence 456678888888888776554444444432211 11 234667777888888999999987776652 111 1
Q ss_pred HHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHH
Q 041480 850 LLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRAL 929 (1122)
Q Consensus 850 ~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL 929 (1122)
.-..++.+..++.+..+.-+..|+.+|..+....+ ..+-.++.++.|..+|.+... .++..|+.+|
T Consensus 119 ---------~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p---~~~~~~~~~~~l~~lL~d~d~--~V~~~A~~aL 184 (591)
T 2vgl_B 119 ---------TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA---QMVEDQGFLDSLRDLIADSNP--MVVANAVAAL 184 (591)
T ss_dssp ---------HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC---CCHHHHHHHHHHHHTTSCSCH--HHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh---hhcccccHHHHHHHHhCCCCh--hHHHHHHHHH
Confidence 11345677888888888999999999999876432 122335789999999976543 6999999999
Q ss_pred HHhhcC
Q 041480 930 LILGGR 935 (1122)
Q Consensus 930 ~~Lag~ 935 (1122)
..++..
T Consensus 185 ~~i~~~ 190 (591)
T 2vgl_B 185 SEISES 190 (591)
T ss_dssp HHHTTS
T ss_pred HHHHhh
Confidence 999975
No 119
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.01 E-value=0.12 Score=54.13 Aligned_cols=189 Identities=15% Similarity=0.154 Sum_probs=125.4
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhh-cCCcchHHHHHHHHHhhccCCC
Q 041480 815 SLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQ-RSPPEQRPLFSILLLHLDLLVE 893 (1122)
Q Consensus 815 pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLq-sgs~~~k~lAA~aLlnLsll~E 893 (1122)
.+.+.+.+.+...|..|+..|..++.....- ........+..|...+. ......+..|+.+|-.|+..-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~---------~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKL---------ENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSB---------CCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCC---------CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 4888888999999999999999987541110 00011234556667774 6666777788888888875211
Q ss_pred hhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCC
Q 041480 894 PRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVD 973 (1122)
Q Consensus 894 pnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d 973 (1122)
....-+-...+++|+..|.+... .+|+.|..||..++...
T Consensus 90 -~~~~~~~~~ilp~ll~~l~d~~~--~vr~~a~~aL~~~~~~~------------------------------------- 129 (242)
T 2qk2_A 90 -KRFSNYASACVPSLLEKFKEKKP--NVVTALREAIDAIYAST------------------------------------- 129 (242)
T ss_dssp -GGGHHHHHHHHHHHHHGGGCCCH--HHHHHHHHHHHHHHTTS-------------------------------------
T ss_pred -hhHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHcC-------------------------------------
Confidence 11223445678888888876543 68999999998887510
Q ss_pred CCCCCchhHHhHHHHHHHhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHH
Q 041480 974 DSTPLDDEEQASEEWLRKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQ 1053 (1122)
Q Consensus 974 ~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~ 1053 (1122)
+...++..|...+.++++.+...++ .|+...+....+..+-..-...++|.
T Consensus 130 --------------------------~~~~ll~~l~~~l~~~~~~vr~~~l---~~l~~~l~~~~~~~~~~~~l~~l~p~ 180 (242)
T 2qk2_A 130 --------------------------SLEAQQESIVESLSNKNPSVKSETA---LFIARALTRTQPTALNKKLLKLLTTS 180 (242)
T ss_dssp --------------------------CHHHHHHHHHHHTTCSCHHHHHHHH---HHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred --------------------------CHHHHHHHHHHHHcCCChHHHHHHH---HHHHHHHHHcCCCCccHHHHHHHHHH
Confidence 0012355666778888887777764 67888887764322222234589999
Q ss_pred HHHhhcCCCChhhHHHHHHHhhhhhCCcc
Q 041480 1054 LKEILQNGEQPQQKVLASMSLLNFSKIPE 1082 (1122)
Q Consensus 1054 Lv~~L~~~~~~eer~LA~~aL~~~~~~~~ 1082 (1122)
|+.+|+ +..-+-|.-|.-+|-.+...-|
T Consensus 181 l~~~l~-D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 181 LVKTLN-EPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHT-SSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhc-CCChHHHHHHHHHHHHHHHHcC
Confidence 999997 5556778888877777765533
No 120
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.99 E-value=0.0076 Score=53.94 Aligned_cols=47 Identities=15% Similarity=0.385 Sum_probs=38.4
Q ss_pred ccccccchhccCCccc-CCCcccchHHHHHHHHh-CCCCCCCCCCcCCC
Q 041480 648 FICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQ-GNRTCPVTGKYLAC 694 (1122)
Q Consensus 648 f~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~-g~~tCP~trq~L~~ 694 (1122)
-.|.||++++..=+.- .|||.|=..||.+||+. +..+||+|++....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4799999999743332 89999999999999986 34899999987754
No 121
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.85 E-value=0.18 Score=58.44 Aligned_cols=149 Identities=11% Similarity=0.015 Sum_probs=100.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVS 848 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~ 848 (1122)
..++.|..++...+.+.|..++..|..++..-+.. .....-++.|+.++...+...|..|+.+|..++..-...
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--- 237 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--- 237 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---
Confidence 34677777777778888888888887766432211 112345677788888888899999999998876432211
Q ss_pred HHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHH
Q 041480 849 TLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRA 928 (1122)
Q Consensus 849 ~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~A 928 (1122)
.+. -..++.+..+++..+...+..++.+|..++....+ ..+....++.++.+|..... .+|..|+.+
T Consensus 238 ~~~--------~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~ 304 (588)
T 1b3u_A 238 DLE--------ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEA--EVRAAASHK 304 (588)
T ss_dssp HHH--------HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSH--HHHHHHHHH
T ss_pred HHH--------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcH--HHHHHHHHH
Confidence 000 12455666666666666788888888877652221 23556789999999976543 689999999
Q ss_pred HHHhhcCC
Q 041480 929 LLILGGRF 936 (1122)
Q Consensus 929 L~~Lag~f 936 (1122)
|..++..+
T Consensus 305 l~~~~~~~ 312 (588)
T 1b3u_A 305 VKEFCENL 312 (588)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHHh
Confidence 99998654
No 122
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.75 E-value=0.0027 Score=60.75 Aligned_cols=119 Identities=15% Similarity=0.041 Sum_probs=78.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVS 848 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~ 848 (1122)
+.++.|+.+|.+.+...|..++..|..+. + ..++.|+.+|...+...|..|+.+|..+.
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~--~----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~--------- 70 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMG--D----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--------- 70 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCS--S----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC---------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhC--c----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcC---------
Confidence 55677777777666655555554443221 1 13688999999888999999998886642
Q ss_pred HHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHH
Q 041480 849 TLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRA 928 (1122)
Q Consensus 849 ~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~A 928 (1122)
...+++.|+.+++..++..+..|+.+|.++. ..++++.|+.+|.+... .++..|+.+
T Consensus 71 ----------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~-----------~~~a~~~L~~~l~d~~~--~vr~~A~~a 127 (131)
T 1te4_A 71 ----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTG--FARKVAVNY 127 (131)
T ss_dssp ----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC-----------SHHHHHHHHHHTTSCCT--HHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCH--HHHHHHHHH
Confidence 1246788888888888888888888887663 24579999999975443 688888887
Q ss_pred HHH
Q 041480 929 LLI 931 (1122)
Q Consensus 929 L~~ 931 (1122)
|..
T Consensus 128 L~~ 130 (131)
T 1te4_A 128 LET 130 (131)
T ss_dssp GGG
T ss_pred HHh
Confidence 753
No 123
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.73 E-value=0.038 Score=67.58 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=59.8
Q ss_pred hhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHH-HHhccCCChHHHHHHHHHHHHhhc
Q 041480 861 NAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITV-ALEESLTDEKIQEKCCRALLILGG 934 (1122)
Q Consensus 861 gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~-LL~~g~~~~~~qe~Aa~AL~~Lag 934 (1122)
+.|.||+..|++.++..|..|+.+|.+|+. ....+..+.++|+|.+++. +|..... .+++.|+.||-||+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~--~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNI--DSRAAGWEILKVLAQ 105 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCH--HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCH--HHHHHHHHHHHHHHh
Confidence 467889999999999999999999999987 4557778999999988655 5665443 699999999999996
No 124
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.68 E-value=0.98 Score=52.17 Aligned_cols=151 Identities=8% Similarity=0.012 Sum_probs=96.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVS 848 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~ 848 (1122)
..+|.|..++...+...|..++..|..++..-+. .......++.++.+|...+...|..|+.+|..++..-......
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 318 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence 4677788888777777777777777665542111 1112235788889998888899999999999887432211000
Q ss_pred -HHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHH
Q 041480 849 -TLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCR 927 (1122)
Q Consensus 849 -~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~ 927 (1122)
.++ -..++.|..+++..++..+..++.+|..++.... ........++.++.+|.... ..+|..|..
T Consensus 319 ~~~~--------~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~--~~Vr~~a~~ 385 (588)
T 1b3u_A 319 NVIM--------SQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLKDEC--PEVRLNIIS 385 (588)
T ss_dssp HHHH--------HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHHHTCSC--HHHHHHHHT
T ss_pred hHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHhCCCc--hHHHHHHHH
Confidence 011 1345666677777777777777777776654211 11123456788888887643 368898888
Q ss_pred HHHHhhcC
Q 041480 928 ALLILGGR 935 (1122)
Q Consensus 928 AL~~Lag~ 935 (1122)
+|..++..
T Consensus 386 ~l~~l~~~ 393 (588)
T 1b3u_A 386 NLDCVNEV 393 (588)
T ss_dssp TCHHHHHH
T ss_pred HHHHHHHh
Confidence 88888753
No 125
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.48 E-value=1.1 Score=49.94 Aligned_cols=290 Identities=9% Similarity=0.034 Sum_probs=153.8
Q ss_pred ccHHHHHHhhcCC--CHHHHHHHHHHHHHhhhcc-hhhHHHHHhccchHHHHHHhhcC--ChhHHHHHHHHHHHHHcccC
Q 041480 769 GGLQFLICRFESG--KLEEKARVAALMCCCIEAD-AGCRNQMARNINVYSLLELLHSK--QVKPRTNTVLLLIDLICLSR 843 (1122)
Q Consensus 769 GaIp~LV~LL~sg--s~Eek~~AaalL~~La~~D-~snR~~Iae~GaI~pLV~LL~SG--s~~aRenAv~aL~eLs~~~~ 843 (1122)
+.++.|+..+.++ +...+..++.+|..+...- +..-.... ...++.++.+|... +...|..|+.+|..+...-+
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6788899999877 7888888887777665421 11100001 12467777888776 68899999999988752211
Q ss_pred ccchHHHHHhhhhhhhhh-hHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhh-ccHHHHHHHHhccCCChHH
Q 041480 844 RRDVSTLLRNVQNEELVN-AMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYRE-AAVDAITVALEESLTDEKI 921 (1122)
Q Consensus 844 ~k~~~~~L~~I~~eG~~g-aI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvRe-GAV~aLV~LL~~g~~~~~~ 921 (1122)
.. . ....... .++.|..++....+..+..++.+|..+..... ....-+=. +.++.++..+.... +.+
T Consensus 207 ~~-----~---~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~--~~v 275 (462)
T 1ibr_B 207 AN-----F---DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY-QYMETYMGPALFAITIEAMKSDI--DEV 275 (462)
T ss_dssp HH-----H---TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGCTTTTTTTHHHHHHHHHHCSS--HHH
T ss_pred Hh-----h---hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCc--hHH
Confidence 00 0 0000001 35555556666566667777777777654221 11111112 66777777776543 368
Q ss_pred HHHHHHHHHHhhcCCC-------C---Cchhhhh--hhhhcc--ccccccccccCCCCCCCCCCCCCCCCCchhHHhHHH
Q 041480 922 QEKCCRALLILGGRFS-------F---SREVANE--SWILKP--AGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEE 987 (1122)
Q Consensus 922 qe~Aa~AL~~Lag~fS-------~---sGe~~~~--~~LlK~--AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~ 987 (1122)
+..|...+..++.... . .+.+..+ ..+.+. ..+.+.+...+...+. |.. ++.. ..-.++..
T Consensus 276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~-d~~-~~~~---~~r~~a~~ 350 (462)
T 1ibr_B 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE-NDD-DDDW---NPCKAAGV 350 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCS-SCC-TTCC---SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccc-ccc-cccc---hHHHHHHH
Confidence 8889988888875210 0 0000000 000000 0011111111111110 100 0000 01112233
Q ss_pred HHHHhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhH
Q 041480 988 WLRKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQK 1067 (1122)
Q Consensus 988 w~rk~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer 1067 (1122)
-+..++..+=+.=...++..|...+.+.+..+..+++.++. .+...+....++... ..++|.|+.+|. +.+..-|
T Consensus 351 ~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~---~l~~~~~~~~~~~~l-~~~~~~l~~~l~-d~~~~Vr 425 (462)
T 1ibr_B 351 CLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFG---CILEGPEPSQLKPLV-IQAMPTLIELMK-DPSVVVR 425 (462)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHH---HTSSSSCTTTTCTTT-TTHHHHHHHGGG-CSCHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH---HHhcCCcHHHHHHHH-HHHHHHHHHHhc-CCCHHHH
Confidence 33344332211111246677788899999999999977655 333333222232222 468899999998 4557899
Q ss_pred HHHHHHhhhhhCC
Q 041480 1068 VLASMSLLNFSKI 1080 (1122)
Q Consensus 1068 ~LA~~aL~~~~~~ 1080 (1122)
.-|+.+|-.|+..
T Consensus 426 ~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 426 DTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 126
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.18 E-value=2 Score=51.29 Aligned_cols=160 Identities=11% Similarity=0.038 Sum_probs=98.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCcc---
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRR--- 845 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k--- 845 (1122)
..++.|..+|...++..|..|+..|..+...+.+ .+-+.+.++.|..+|...+...+.+|+.+|.++...+...
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 3456788888888888888888888777654332 2233467788999998888999999999999987543211
Q ss_pred -----chHHHHHhhhhhh---------------------hhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCC--Chhhh
Q 041480 846 -----DVSTLLRNVQNEE---------------------LVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLV--EPRKY 897 (1122)
Q Consensus 846 -----~~~~~L~~I~~eG---------------------~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~--EpnK~ 897 (1122)
....++..+.+.. ....+..|+.++++.++.-.-.|+.++.++.... .+.-.
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~ 277 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYY 277 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSH
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHH
Confidence 0111232222111 1234555555666666666777777777765311 11111
Q ss_pred hhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhc
Q 041480 898 SIYREAAVDAITVALEESLTDEKIQEKCCRALLILGG 934 (1122)
Q Consensus 898 sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag 934 (1122)
..+-..++++|+.++. +. ...|-.|..+|..++.
T Consensus 278 ~~~~~~~~~~L~~L~~-~d--~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 278 NMLLKKLAPPLVTLLS-GE--PEVQYVALRNINLIVQ 311 (591)
T ss_dssp HHHHHHTHHHHHHHTT-SC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CC--ccHHHHHHHHHHHHHH
Confidence 1122345667776654 22 3678888888887764
No 127
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.02 E-value=2.5 Score=50.84 Aligned_cols=291 Identities=12% Similarity=0.099 Sum_probs=158.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHH
Q 041480 770 GLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVST 849 (1122)
Q Consensus 770 aIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~ 849 (1122)
++..|.+-|.+.++-.+.-|+..|.++.. . .++ ...++.+..+|.+.+...|.+|+.+|..|...... .
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~----~~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~--~-- 176 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS--S----EMC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE--L-- 176 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--H----HHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG--G--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--H----HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH--H--
Confidence 34456666766777667677777776542 1 122 23467888899999999999999999998753221 1
Q ss_pred HHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhc-------------cC
Q 041480 850 LLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEE-------------SL 916 (1122)
Q Consensus 850 ~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~-------------g~ 916 (1122)
. -+.+..|..+|....+.-+..|+.+|..++.. .+.....+ ...|+.|+.+|.. +.
T Consensus 177 -----v----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~-~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~ 245 (618)
T 1w63_A 177 -----M----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCER-SPDMLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGI 245 (618)
T ss_dssp -----G----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS-HHHHHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSS
T ss_pred -----H----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh-ChHHHHHH-HHHHHHHHHHHHHHHcCCCCccccccCC
Confidence 1 13344455556666677788888888888653 22111223 3578889888864 13
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHH
Q 041480 917 TDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSASL 996 (1122)
Q Consensus 917 ~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~L 996 (1122)
.++..|....++|..|+... +-.... +.+.+..+..+.... .. . ...-.-..+.++
T Consensus 246 ~~~~~q~~il~~L~~l~~~~-----~~~~~~------~~~~L~~l~~~~~~~----~~------~---~~aV~~ea~~~i 301 (618)
T 1w63_A 246 SDPFLQVRILRLLRILGRND-----DDSSEA------MNDILAQVATNTETS----KN------V---GNAILYETVLTI 301 (618)
T ss_dssp SCHHHHHHHHHHHHHHTTTC-----HHHHHT------THHHHHHHHHTSCCS----ST------H---HHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCC-----HHHHHH------HHHHHHHHHhccccc----cc------h---HHHHHHHHHHHH
Confidence 35689999999999998632 211111 111111100000000 00 0 000111122233
Q ss_pred hcCCch-----hhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHH
Q 041480 997 LGNRKR-----SFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLAS 1071 (1122)
Q Consensus 997 v~~G~~-----~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~ 1071 (1122)
+.-+.. .....|...+.++.+++...+|.++. .....-| .+.....+.++.+|. +.+..=|..|.
T Consensus 302 ~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~---~i~~~~p------~~~~~~~~~i~~~l~-d~d~~Ir~~al 371 (618)
T 1w63_A 302 MDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLL---KTVQTDH------NAVQRHRSTIVDCLK-DLDVSIKRRAM 371 (618)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHH---HHHHHHH------HHHGGGHHHHHHGGG-SSCHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH---HHHhhCH------HHHHHHHHHHHHHcc-CCChhHHHHHH
Confidence 322221 13456666778888888877765444 3333222 233445667777776 45566677777
Q ss_pred HHhhhhhCCcch---hhhHHHH--------hhHhHHHhhhhcc-----chhhHHHHHHHHh
Q 041480 1072 MSLLNFSKIPEC---GAVLKTI--------AAEIRIPLQSLTE-----VTWTTQELCAIIA 1116 (1122)
Q Consensus 1072 ~aL~~~~~~~~~---~~~L~~~--------a~gi~~~Lr~L~~-----~tw~A~el~~~~~ 1116 (1122)
=.|+.++..... ...|..+ ...++..+.+++. ..|.-..|++.|.
T Consensus 372 elL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~ 432 (618)
T 1w63_A 372 ELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLT 432 (618)
T ss_dssp HHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 777777665321 2222222 2234444555543 4566666665553
No 128
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.01 E-value=0.022 Score=48.75 Aligned_cols=48 Identities=13% Similarity=0.299 Sum_probs=40.0
Q ss_pred CcccccccchhccCCcccCCCc-----ccchHHHHHHHHh-CCCCCCCCCCcCC
Q 041480 646 QDFICPLTGQLFEEPVTLESGQ-----TFECEAIKEWIEQ-GNRTCPVTGKYLA 693 (1122)
Q Consensus 646 eef~CPIc~elm~DPVtl~cGh-----TycRscIe~wl~~-g~~tCP~trq~L~ 693 (1122)
+.-.|.||++-..+|.+.||.. -|=+.||.+|+.. ++.+||+|++++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4557999988888888888653 7899999999985 7889999998764
No 129
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=94.40 E-value=2.1 Score=52.08 Aligned_cols=286 Identities=13% Similarity=0.083 Sum_probs=149.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHh--ccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccch
Q 041480 770 GLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMAR--NINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDV 847 (1122)
Q Consensus 770 aIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae--~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~ 847 (1122)
.++.|...|.+.+...|..++..|..++..-. ...+.. ...++.|+..|...+...|..|+.+|..++..-... .
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~--~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~ 446 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPD--KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES-I 446 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC--HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG-S
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhh-c
Confidence 45666777777777777777777777664211 122221 134677778887778889999988888876431100 0
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCC---hhhhhhhhhccHHHHHHHHhccCCChHHHHH
Q 041480 848 STLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVE---PRKYSIYREAAVDAITVALEESLTDEKIQEK 924 (1122)
Q Consensus 848 ~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~E---pnK~sIvReGAV~aLV~LL~~g~~~~~~qe~ 924 (1122)
....-.-..++.|+..++.. +..+..|+.+|.+++.... +....-+=...++.|+.+|.....+..+|..
T Consensus 447 ------~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~ 519 (861)
T 2bpt_A 447 ------DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARAS 519 (861)
T ss_dssp ------CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHH
T ss_pred ------CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHH
Confidence 00001124567778788754 6667777788877754211 1111123356688888888754432368999
Q ss_pred HHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHH----hHHHHHHHhHHHHhcCC
Q 041480 925 CCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQ----ASEEWLRKLSASLLGNR 1000 (1122)
Q Consensus 925 Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~----~~~~w~rk~a~~Lv~~G 1000 (1122)
+..+|..|+......-.++....+ . -+.+.+...+. ... ..+... ..++.. .+-..+..++.. ++..
T Consensus 520 a~~al~~l~~~~~~~~~~~~~~l~-~--~l~~~l~~~~~-~~~--~i~~~~--~~~~~~~~~~~~~~~l~~l~~~-~~~~ 590 (861)
T 2bpt_A 520 AFSALTTMVEYATDTVAETSASIS-T--FVMDKLGQTMS-VDE--NQLTLE--DAQSLQELQSNILTVLAAVIRK-SPSS 590 (861)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHH-H--HHHHHHHHHTT-SCG--GGCCHH--HHHHHHHHHHHHHHHHHHHHHH-CGGG
T ss_pred HHHHHHHHHHHcchhhHHHHHHHH-H--HHHHHHHHHHh-hhc--ccCChh--hHHHHHHHHHHHHHHHHHHHHH-hhhh
Confidence 999999998643221111111111 0 00111111000 000 000000 000000 011111222211 1222
Q ss_pred ch----hhHHHHHHhhccCCc-hhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhh
Q 041480 1001 KR----SFLETVSKILGSRNS-DLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLL 1075 (1122)
Q Consensus 1001 ~~----~~L~aL~~~l~s~~~-~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~ 1075 (1122)
.. .++..|.+.+.+... .+...++.+++++...+. + .+.. -...++|.|...|. ..+.+-|.-|.-++.
T Consensus 591 ~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~---~-~~~~-~l~~i~~~l~~~l~-~~~~~vr~~a~~~l~ 664 (861)
T 2bpt_A 591 VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG---K-GFEK-YLETFSPYLLKALN-QVDSPVSITAVGFIA 664 (861)
T ss_dssp TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHG---G-GGHH-HHHHHHHHHHHHHH-CTTSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHh---h-hHHH-HHHHHHHHHHHHhc-cccHHHHHHHHHHHH
Confidence 22 355666777877776 777777776666665543 2 2321 13458899999996 444556666666666
Q ss_pred hhhCC
Q 041480 1076 NFSKI 1080 (1122)
Q Consensus 1076 ~~~~~ 1080 (1122)
.+++.
T Consensus 665 ~l~~~ 669 (861)
T 2bpt_A 665 DISNS 669 (861)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 130
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.11 E-value=0.64 Score=48.50 Aligned_cols=171 Identities=15% Similarity=0.070 Sum_probs=109.5
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHHHhhhcch-hhHHHHHhccchHHHH
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFE-SGKLEEKARVAALMCCCIEADA-GCRNQMARNINVYSLL 817 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~-sgs~Eek~~AaalL~~La~~D~-snR~~Iae~GaI~pLV 817 (1122)
.+++..|..++.....-. ..+ + ...++.|..+|. ..+...+..++..|..++..-+ ....++ ..-+++|+
T Consensus 33 ~~a~~~L~~l~~~~~~~~-~~~---~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~ll 104 (242)
T 2qk2_A 33 KESLEVLEKLLTDHPKLE-NGE---Y--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPSLL 104 (242)
T ss_dssp HHHHHHHHHHHHHCSSBC-CCC---C--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCC-CCC---H--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHH
Confidence 346666777765422100 000 1 134567788884 6777777777766666553211 111111 22578899
Q ss_pred HHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhh-
Q 041480 818 ELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRK- 896 (1122)
Q Consensus 818 ~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK- 896 (1122)
..|.......|..|..+|.++..... . -..++.|+..+++..+..+..++.+|..+.....+..
T Consensus 105 ~~l~d~~~~vr~~a~~aL~~~~~~~~---~------------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 105 EKFKEKKPNVVTALREAIDAIYASTS---L------------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTSC---H------------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHcCC---H------------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 99988889999999999999863221 1 1346778888888888888888888888533222221
Q ss_pred hhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcC
Q 041480 897 YSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGR 935 (1122)
Q Consensus 897 ~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~ 935 (1122)
..-+=...++.|+.+|..... .+|..|..+|..|+..
T Consensus 170 ~~~~l~~l~p~l~~~l~D~~~--~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 170 NKKLLKLLTTSLVKTLNEPDP--TVRDSSAEALGTLIKL 206 (242)
T ss_dssp CHHHHHHHHHHHHHHHTSSCH--HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHH
Confidence 111224678889999976553 6999999999999864
No 131
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.06 E-value=6.3 Score=43.83 Aligned_cols=277 Identities=9% Similarity=0.049 Sum_probs=145.3
Q ss_pred ccHHHHHHhhcCC--CHHHHHHHHHHHHHhhhcc----------------hhhHHHHHhccchHHHHHHhhcCChhHHHH
Q 041480 769 GGLQFLICRFESG--KLEEKARVAALMCCCIEAD----------------AGCRNQMARNINVYSLLELLHSKQVKPRTN 830 (1122)
Q Consensus 769 GaIp~LV~LL~sg--s~Eek~~AaalL~~La~~D----------------~snR~~Iae~GaI~pLV~LL~SGs~~aRen 830 (1122)
|.+..|+.+|... +...|..++.+|-++.... ++.|..| ...|+..|.+.+... ..
T Consensus 35 ~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~i-----k~~ll~~l~~~~~~v-~~ 108 (462)
T 1ibr_B 35 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREV-----KNYVLQTLGTETYRP-SS 108 (462)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHH-----HHHHHHHTTCCCSSS-CS
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHH-----HHHHHHHhCCCCchh-hH
Confidence 4556677777654 4556666666666654321 1112212 234666676655555 56
Q ss_pred HHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcC--CcchHHHHHHHHHhhccCCChhhhhhhhhccHHHH
Q 041480 831 TVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRS--PPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAI 908 (1122)
Q Consensus 831 Av~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsg--s~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aL 908 (1122)
++.+|..++...-. ...-.+.++.|+..++++ ++..+..+..+|..++....+.-..-+-...++.+
T Consensus 109 ~~~~i~~ia~~~~~-----------~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l 177 (462)
T 1ibr_B 109 ASQCVAGIACAEIP-----------VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAI 177 (462)
T ss_dssp HHHHHHHHHHHHGG-----------GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-----------ccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHH
Confidence 66666666532110 001235778888888887 77778888888888764211111122334577888
Q ss_pred HHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhH--HhHH
Q 041480 909 TVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEE--QASE 986 (1122)
Q Consensus 909 V~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee--~~~~ 986 (1122)
+.+|.....+..+|..|+.+|..+...+ ++.. ..|.... -+.+.+.... .+. +++ ..+-
T Consensus 178 ~~~l~~~~~~~~vr~~a~~~l~~~~~~~---~~~~-~~~~~~~-~l~~~l~~~~----------~~~----~~~vr~~~~ 238 (462)
T 1ibr_B 178 IQGMRKEEPSNNVKLAATNALLNSLEFT---KANF-DKESERH-FIMQVVCEAT----------QCP----DTRVRVAAL 238 (462)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHHHTTTT---HHHH-TSHHHHH-HHHHHHHHHT----------TCS----SHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHH---HHhh-hhhHHHH-HHHHHHHHhc----------CCC----CHHHHHHHH
Confidence 8888776323468999999999876432 1111 1111000 0111111100 010 111 1111
Q ss_pred HHHHHhHHHH---hcCCch-hhHHHHHHhhccCCchhHHHHHHHHHHHHhhhc------c------CC--Cc--hhhHhh
Q 041480 987 EWLRKLSASL---LGNRKR-SFLETVSKILGSRNSDLVSVCLTTVAWLSHALS------A------QP--DA--EFQLSA 1046 (1122)
Q Consensus 987 ~w~rk~a~~L---v~~G~~-~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~------~------~~--~t--~~~~~A 1046 (1122)
..+..++... +..-.. .++..+..++.+...++...++-.+.+++.... . .+ .. .+-...
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (462)
T 1ibr_B 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (462)
T ss_dssp HHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH
Confidence 1112222111 111112 566777788889999999888877666665430 0 00 00 111112
Q ss_pred HHHhHHHHHHhhcCC------CChhhHHHHHHHhhhhhCCc
Q 041480 1047 FSAVISQLKEILQNG------EQPQQKVLASMSLLNFSKIP 1081 (1122)
Q Consensus 1047 ~~~ll~~Lv~~L~~~------~~~eer~LA~~aL~~~~~~~ 1081 (1122)
-..++|.|.++|... .+-.-|..|+.+|..++..-
T Consensus 319 ~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~ 359 (462)
T 1ibr_B 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359 (462)
T ss_dssp HHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc
Confidence 366788888888532 22346888888888887753
No 132
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=93.89 E-value=0.033 Score=52.45 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=38.4
Q ss_pred cccccchhccCC-cccCCCcccchHHHHHHHHhCCCCCCCCCCcCCC
Q 041480 649 ICPLTGQLFEEP-VTLESGQTFECEAIKEWIEQGNRTCPVTGKYLAC 694 (1122)
Q Consensus 649 ~CPIc~elm~DP-Vtl~cGhTycRscIe~wl~~g~~tCP~trq~L~~ 694 (1122)
.|++|.-.+..= -++||+|.||-.|+..|..++..+||.|++++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 478887766543 3679999999999999999999999999987654
No 133
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=93.68 E-value=6.2 Score=47.96 Aligned_cols=319 Identities=14% Similarity=0.066 Sum_probs=168.4
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhh---HHHHHhccchHHH
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGC---RNQMARNINVYSL 816 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~sn---R~~Iae~GaI~pL 816 (1122)
.+++.+|..+......+. -..++ ...++.|+..+...+...|..++-.|..++..-+.. ...+ ...++.|
T Consensus 387 ~~a~~~l~~i~~~~~~~~---~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l 459 (861)
T 2bpt_A 387 EAAVMAFGSIMDGPDKVQ---RTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQAC 459 (861)
T ss_dssp HHHHHHHHHTSSSSCHHH---HHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHH---HHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHH
Confidence 456667777765442111 11121 146788888887777777776666665554321110 1111 1246777
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHcccC---ccchHHHHHhhhhhhhhhhHHHHHHHhhcCC--cchHHHHHHHHHhhccC
Q 041480 817 LELLHSKQVKPRTNTVLLLIDLICLSR---RRDVSTLLRNVQNEELVNAMHVLLLYLQRSP--PEQRPLFSILLLHLDLL 891 (1122)
Q Consensus 817 V~LL~SGs~~aRenAv~aL~eLs~~~~---~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs--~~~k~lAA~aLlnLsll 891 (1122)
+..|... ...|..|+.+|..++..-. ...+...+ -..++.|+..++..+ +..+..++.+|..+...
T Consensus 460 ~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--------~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 460 LIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--------PALVDGLIGAANRIDNEFNARASAFSALTTMVEY 530 (861)
T ss_dssp HHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--------HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--------HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence 7777665 7889999999988864311 11111111 134567777777543 45566677777777553
Q ss_pred CChhhhhhhhhccHHHHHHHHhcc--------C-----CChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccc
Q 041480 892 VEPRKYSIYREAAVDAITVALEES--------L-----TDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRC 958 (1122)
Q Consensus 892 ~EpnK~sIvReGAV~aLV~LL~~g--------~-----~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~ 958 (1122)
... ...-+=...++.++..|... . .....+..+..+|..++......=.++... +.+.+
T Consensus 531 ~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-------l~~~l 602 (861)
T 2bpt_A 531 ATD-TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADM-------LMGLF 602 (861)
T ss_dssp CCG-GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHH-------HHHHH
T ss_pred cch-hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-------HHHHH
Confidence 221 22222235677788887642 0 011356678888888875421100111111 11111
Q ss_pred cccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHhcCCch----hhHHHHHHhhccCCchhHHHHHHHHHHHHhhh
Q 041480 959 EGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRKR----SFLETVSKILGSRNSDLVSVCLTTVAWLSHAL 1034 (1122)
Q Consensus 959 ~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~----~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L 1034 (1122)
.....+..+ + . . -+. +-.+...++.+ ++..+. .++..|.+++.+...++...++.++.-++..+
T Consensus 603 ~~~l~~~~~-----~-~--v--~~~-~~~~l~~l~~~-~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 603 FRLLEKKDS-----A-F--I--EDD-VFYAISALAAS-LGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp HHHHHSTTG-----G-G--T--HHH-HHHHHHHHHHH-HGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHccCCC-----C-c--H--HHH-HHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 111100000 0 0 1 111 33344555533 334444 35566777888888888888877666665554
Q ss_pred ccCCCchhhHhhHHHhHHHHHHhhcCC-CChhhHHHHHHHhhhhhCCcchhhhHHHHhhHhHHHhhhh
Q 041480 1035 SAQPDAEFQLSAFSAVISQLKEILQNG-EQPQQKVLASMSLLNFSKIPECGAVLKTIAAEIRIPLQSL 1101 (1122)
Q Consensus 1035 ~~~~~t~~~~~A~~~ll~~Lv~~L~~~-~~~eer~LA~~aL~~~~~~~~~~~~L~~~a~gi~~~Lr~L 1101 (1122)
. + .+... ...+++.|++.|+.. .+.+.|..+..+|..++..-+ ..+..+-..+...|.+.
T Consensus 671 ~---~-~~~~~-~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~--~~~~~~l~~~l~~l~~~ 731 (861)
T 2bpt_A 671 E---E-DFRRY-SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG--ADFIPYLNDIMALCVAA 731 (861)
T ss_dssp G---G-GGHHH-HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHHHH
T ss_pred c---h-hccch-HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHH
Confidence 3 2 23322 367788888998854 235678777777777766421 23444444444444443
No 134
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=93.45 E-value=0.013 Score=66.07 Aligned_cols=49 Identities=14% Similarity=0.356 Sum_probs=39.1
Q ss_pred CcccccccchhccC----Ccc----cCCCcccchHHHHHHHHhC-C---------CCCCCCCCcCCC
Q 041480 646 QDFICPLTGQLFEE----PVT----LESGQTFECEAIKEWIEQG-N---------RTCPVTGKYLAC 694 (1122)
Q Consensus 646 eef~CPIc~elm~D----PVt----l~cGhTycRscIe~wl~~g-~---------~tCP~trq~L~~ 694 (1122)
...-|+||...+.+ |-. ..|||.|-..||.+|+... . .+||.|+++++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 45579999999987 532 4799999999999999851 1 469999998754
No 135
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=93.11 E-value=1.7 Score=47.15 Aligned_cols=147 Identities=14% Similarity=0.051 Sum_probs=107.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhc-chhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccch
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEA-DAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDV 847 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~-D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~ 847 (1122)
+.+..|..+|...+...+.+++.+|-.+... ++.-+..+.+. .++.++.++.+.+.+...+|+.+|..|.....-
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL--- 108 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALSQENEKVTIKALRALGYLVKDVPM--- 108 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB---
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC---
Confidence 4667888999888889999998887766543 33444444443 578999999999999999999999998743221
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHH
Q 041480 848 STLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCR 927 (1122)
Q Consensus 848 ~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~ 927 (1122)
-+++..-.+++|..++..+.+-...-||-.|--|-.. .+.+ +.+..|..++.+. +...|..+.+
T Consensus 109 -------~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~-~~~~------~V~~~l~sLl~Sk--d~~vK~agl~ 172 (265)
T 3b2a_A 109 -------GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPL-EDSK------LVRTYINELVVSP--DLYTKVAGFC 172 (265)
T ss_dssp -------CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBS-CCCH------HHHHHHHHHHTCS--SHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcc-cchH------HHHHHHHHHHhCC--ChhHHHHHHH
Confidence 1122334668888888888888888888888877443 2222 2578889999433 3479999999
Q ss_pred HHHHhhcC
Q 041480 928 ALLILGGR 935 (1122)
Q Consensus 928 AL~~Lag~ 935 (1122)
+|.++++.
T Consensus 173 ~L~eia~~ 180 (265)
T 3b2a_A 173 LFLNMLNS 180 (265)
T ss_dssp HHHHHGGG
T ss_pred HHHHhhcc
Confidence 99999974
No 136
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=92.39 E-value=0.41 Score=45.48 Aligned_cols=87 Identities=13% Similarity=0.027 Sum_probs=65.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHH
Q 041480 770 GLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVST 849 (1122)
Q Consensus 770 aIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~ 849 (1122)
.++.|+.+|...+...|..++..|..+. + ..+++.|+.+|...+...|..|+.+|..+.
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~--~---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---------- 101 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQ--D---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---------- 101 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGC--S---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcC--C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 3688999998888888888887776543 1 235899999999999999999999998762
Q ss_pred HHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHH
Q 041480 850 LLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLL 886 (1122)
Q Consensus 850 ~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLl 886 (1122)
...+++.|+.+++..++..+..|+.+|.
T Consensus 102 ---------~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 102 ---------GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ---------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ---------cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1245678888887666666666666554
No 137
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.36 E-value=0.044 Score=50.69 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=29.5
Q ss_pred Ccccccccch-hccCCcc--cCCCcccchHHHHHHHH
Q 041480 646 QDFICPLTGQ-LFEEPVT--LESGQTFECEAIKEWIE 679 (1122)
Q Consensus 646 eef~CPIc~e-lm~DPVt--l~cGhTycRscIe~wl~ 679 (1122)
+++.|+||.+ ++.+||+ +.|||+||+.|++.++.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 5689999996 5899999 89999999999999433
No 138
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=91.82 E-value=29 Score=42.19 Aligned_cols=290 Identities=10% Similarity=0.023 Sum_probs=149.0
Q ss_pred ccHHHHHHhhcCC--CHHHHHHHHHHHHHhhhcchhhHHHHHh--ccchHHHHHHhhcC--ChhHHHHHHHHHHHHHccc
Q 041480 769 GGLQFLICRFESG--KLEEKARVAALMCCCIEADAGCRNQMAR--NINVYSLLELLHSK--QVKPRTNTVLLLIDLICLS 842 (1122)
Q Consensus 769 GaIp~LV~LL~sg--s~Eek~~AaalL~~La~~D~snR~~Iae--~GaI~pLV~LL~SG--s~~aRenAv~aL~eLs~~~ 842 (1122)
..++.|+..+.+. +...+..++.+|..+...-. ...+.. ..-++.++..|... +...|..|+.+|..++..-
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678888888877 77778777777776654210 111111 12456677777665 5788999999998876321
Q ss_pred CccchHHHHHhhhhhhh-hhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHH
Q 041480 843 RRRDVSTLLRNVQNEEL-VNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKI 921 (1122)
Q Consensus 843 ~~k~~~~~L~~I~~eG~-~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~ 921 (1122)
... +..... -..+..|..+++...+..+..+..+|..+.......-...+....++.++..+... ++.+
T Consensus 206 ~~~--------~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v 275 (876)
T 1qgr_A 206 KAN--------FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEV 275 (876)
T ss_dssp HHH--------HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--SHHH
T ss_pred HHH--------HHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC--chHH
Confidence 100 000000 12456666666655566666666667666542211101112225667676666433 3367
Q ss_pred HHHHHHHHHHhhcCCCC---Cchhhhh--------h-hhhcc--ccccccccccCCCCCCCCCCCCCCCCCchhHHhHHH
Q 041480 922 QEKCCRALLILGGRFSF---SREVANE--------S-WILKP--AGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEE 987 (1122)
Q Consensus 922 qe~Aa~AL~~Lag~fS~---sGe~~~~--------~-~LlK~--AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~ 987 (1122)
+..|...+..++..... .++.... . -..+. ..+.+.+...+..... |. ++.. -.--.++..
T Consensus 276 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~-d~--~~~~--~~~r~~a~~ 350 (876)
T 1qgr_A 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE-ND--DDDD--WNPCKAAGV 350 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCS-SC--CTTC--CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccc-cc--cccc--cHHHHHHHH
Confidence 88888888888742100 0000000 0 00000 0011111111111110 00 0000 001112222
Q ss_pred HHHHhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhH
Q 041480 988 WLRKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQK 1067 (1122)
Q Consensus 988 w~rk~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer 1067 (1122)
-+..++..+-+.-...++..|...+.+.+..+..+++.++. .+...+++..+.. -...++|.|+..|. +....-|
T Consensus 351 ~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~---~i~~~~~~~~~~~-~~~~~l~~l~~~l~-d~~~~vr 425 (876)
T 1qgr_A 351 CLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFG---CILEGPEPSQLKP-LVIQAMPTLIELMK-DPSVVVR 425 (876)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHH---HTSSSSCHHHHHH-HHHHHHHHHHHHHT-CSSHHHH
T ss_pred HHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHH---HHHcCCCHHHHHH-HHHHHHHHHHHHhC-CCCHHHH
Confidence 33334333221112356677778888999999888866544 2223333122322 23558899999997 4557788
Q ss_pred HHHHHHhhhhhCC
Q 041480 1068 VLASMSLLNFSKI 1080 (1122)
Q Consensus 1068 ~LA~~aL~~~~~~ 1080 (1122)
..|+.+|.+|+..
T Consensus 426 ~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 426 DTAAWTVGRICEL 438 (876)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8999999999876
No 139
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.78 E-value=0.094 Score=59.84 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=51.8
Q ss_pred CCCcccccccchhccCCccc-CCCcc--cchHHHHHHHHh-CCCCCCCCCCcCCCCCCCcchHHHHHHHH
Q 041480 644 IPQDFICPLTGQLFEEPVTL-ESGQT--FECEAIKEWIEQ-GNRTCPVTGKYLACPSLPLTNFILKRVID 709 (1122)
Q Consensus 644 ipeef~CPIc~elm~DPVtl-~cGhT--ycRscIe~wl~~-g~~tCP~trq~L~~~~ll~pN~~Lk~lIe 709 (1122)
+.-.+.|||+...|..||-- .|.|. |+...+.....+ +...||+|++.+....| .....+..+++
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL-~ID~~~~~IL~ 314 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENL-AISEFVDDILQ 314 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGE-EEBHHHHHHHT
T ss_pred eEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHe-eEcHHHHHHHH
Confidence 34568999999999999975 89987 999988886554 67799999999887774 66666655544
No 140
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=91.14 E-value=7.2 Score=47.45 Aligned_cols=268 Identities=11% Similarity=0.055 Sum_probs=141.0
Q ss_pred ccHHHHHHhhcCC--CHHHHHHHHHHHHHhhhcchhh-HHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCcc
Q 041480 769 GGLQFLICRFESG--KLEEKARVAALMCCCIEADAGC-RNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRR 845 (1122)
Q Consensus 769 GaIp~LV~LL~sg--s~Eek~~AaalL~~La~~D~sn-R~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k 845 (1122)
..++.|...|... +.+.+..++..|..++..-+.+ .........++.+..++...+...|..|+.+|..|+......
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 4456677777655 5677777777777665321111 000011123555666677777889999999999887432211
Q ss_pred chHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCC---------------Chhhh--hh---hhhccH
Q 041480 846 DVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLV---------------EPRKY--SI---YREAAV 905 (1122)
Q Consensus 846 ~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~---------------EpnK~--sI---vReGAV 905 (1122)
....+. -..++.++..++...+..+..+...+..++... .|.+. .. +-...+
T Consensus 252 -~~~~~~-------~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 323 (876)
T 1qgr_A 252 -METYMG-------PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (876)
T ss_dssp -CHHHHT-------TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHH
T ss_pred -HHHHHH-------HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHh
Confidence 111111 034455555555444444555554455443210 00000 01 113456
Q ss_pred HHHHHHHhccC-----CChHHHHHHHHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCch
Q 041480 906 DAITVALEESL-----TDEKIQEKCCRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDD 980 (1122)
Q Consensus 906 ~aLV~LL~~g~-----~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ 980 (1122)
+.++..|.... .+-..|..|+.+|..|+..+ |+.... . +.+.+.....+.+
T Consensus 324 ~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~---~~~~~~-~------~l~~l~~~l~~~~-------------- 379 (876)
T 1qgr_A 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC---EDDIVP-H------VLPFIKEHIKNPD-------------- 379 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH---GGGGHH-H------HHHHHHHHTTCSS--------------
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC---cHhhHH-H------HHHHHHHHccCCC--------------
Confidence 77777775321 11147888999999998643 222111 1 1111111000111
Q ss_pred hHHhHHHHHHH-hHH---HHhcCCch---------hhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhH
Q 041480 981 EEQASEEWLRK-LSA---SLLGNRKR---------SFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAF 1047 (1122)
Q Consensus 981 ee~~~~~w~rk-~a~---~Lv~~G~~---------~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~ 1047 (1122)
|..+ .|. .-+..|.. .++..|..++.+.++.+..+++.++.-++..+.. ........
T Consensus 380 -------~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~l 449 (876)
T 1qgr_A 380 -------WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE---AAINDVYL 449 (876)
T ss_dssp -------HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG---GTSSTTTH
T ss_pred -------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch---hcccHHHH
Confidence 2211 100 01122221 3567788889999999988886666544444332 11122346
Q ss_pred HHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCC
Q 041480 1048 SAVISQLKEILQNGEQPQQKVLASMSLLNFSKI 1080 (1122)
Q Consensus 1048 ~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~ 1080 (1122)
..+++.|...|+.. ..-|.-|+.+|.+|+..
T Consensus 450 ~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 450 APLLQCLIEGLSAE--PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence 68899999999863 44577888899988865
No 141
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=91.10 E-value=9.8 Score=48.99 Aligned_cols=293 Identities=11% Similarity=0.134 Sum_probs=149.9
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHhhhcchh-hHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccc
Q 041480 769 GGLQFLICRFE-SGKLEEKARVAALMCCCIEADAG-CRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRD 846 (1122)
Q Consensus 769 GaIp~LV~LL~-sgs~Eek~~AaalL~~La~~D~s-nR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~ 846 (1122)
..+|.|...+. +.+...+..++.+|..+....+. -..++ ...++.|+..|...+...|..|+.+|..++......
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~- 209 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI- 209 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH-
Confidence 46788888887 46777788888877766532111 00011 224566777777777889999999999987443221
Q ss_pred hHHHHHhhhhhhhhhhHHHHHHHhhcCC-cchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHH
Q 041480 847 VSTLLRNVQNEELVNAMHVLLLYLQRSP-PEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKC 925 (1122)
Q Consensus 847 ~~~~L~~I~~eG~~gaI~~Ll~lLqsgs-~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~A 925 (1122)
+ .-..|+.|+..|.... ...+..++.+|..++.... .+..-+-...++.++..+..... .+|+.|
T Consensus 210 ---~--------~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~l~~~ll~~l~d~~~--~vR~~a 275 (1230)
T 1u6g_C 210 ---V--------FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG-HRIGEYLEKIIPLVVKFCNVDDD--ELREYC 275 (1230)
T ss_dssp ------------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS-GGGTTSCTTHHHHHHHHHSSCCT--TTHHHH
T ss_pred ---H--------HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHhcCCCH--HHHHHH
Confidence 1 1134677777776543 3445555656665544222 22222346789999999976543 489999
Q ss_pred HHHHHHhhcCCCCCchhhhhhh---hhccccccccccccCCCCCCCCCCCC--CCCCCch-h----HHhHHHHH-HHhHH
Q 041480 926 CRALLILGGRFSFSREVANESW---ILKPAGFNDRCEGNSLDNDENDLPVD--DSTPLDD-E----EQASEEWL-RKLSA 994 (1122)
Q Consensus 926 a~AL~~Lag~fS~sGe~~~~~~---LlK~AG~~~~~~~~~~~~~~~d~~~d--~~~~~~~-e----e~~~~~w~-rk~a~ 994 (1122)
..+|..|+..+...=.++.... +++.....+.+.. ..+..+.+..-+ +.....+ + +.....|. |+.|.
T Consensus 276 ~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~ 354 (1230)
T 1u6g_C 276 IQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNY-DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAA 354 (1230)
T ss_dssp HHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------------------------------------CTTHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCC-cccccccccccccccccchhhcccccccccccCHHHHHHHH
Confidence 9999999875432212232222 2222211111100 000000000000 0000000 0 00012366 44332
Q ss_pred H----HhcCCc---h----hhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCc--h---hh-----HhhHHH----
Q 041480 995 S----LLGNRK---R----SFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDA--E---FQ-----LSAFSA---- 1049 (1122)
Q Consensus 995 ~----Lv~~G~---~----~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t--~---~~-----~~A~~~---- 1049 (1122)
. |+.... . .++..|...+.+.+.++..+++-++.-++..+....+. + ++ ..+...
T Consensus 355 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 434 (1230)
T 1u6g_C 355 KCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPN 434 (1230)
T ss_dssp HHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTH
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhH
Confidence 2 222221 2 23455666677888888888887766566555432210 0 00 012223
Q ss_pred hHHHHHHhhcCCCChhhHHHHHHHhhhhhCC
Q 041480 1050 VISQLKEILQNGEQPQQKVLASMSLLNFSKI 1080 (1122)
Q Consensus 1050 ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~ 1080 (1122)
++|.|.+.|+ +.....|.-++.+|..++..
T Consensus 435 ll~~l~~~l~-~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 435 IVKALHKQMK-EKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp HHHHHHHHTT-CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Confidence 3444455577 44566777788888887765
No 142
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=90.97 E-value=4.7 Score=51.94 Aligned_cols=272 Identities=11% Similarity=0.014 Sum_probs=139.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHH
Q 041480 771 LQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTL 850 (1122)
Q Consensus 771 Ip~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~ 850 (1122)
++.|+.-+.+.+.+.|..|..-|......+...-..-.....++.|++.|.+.+...|..|+.+|..|+..-... .
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~----~ 83 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY----Q 83 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH----H
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH----H
Confidence 344555566677788877777666544321000000001134677888888888999999999999987321110 1
Q ss_pred HHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChh-----hhhhhhhccHHHHHHHHhccCCChHHHHHH
Q 041480 851 LRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPR-----KYSIYREAAVDAITVALEESLTDEKIQEKC 925 (1122)
Q Consensus 851 L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~Epn-----K~sIvReGAV~aLV~LL~~g~~~~~~qe~A 925 (1122)
.-..+..|+..+....+..+..|+.+|-.++....+. -..-+-...++.|+..+.... +...+..|
T Consensus 84 --------~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~-~~~~~~~a 154 (1230)
T 1u6g_C 84 --------VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE-DVSVQLEA 154 (1230)
T ss_dssp --------HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHH
T ss_pred --------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC-chHHHHHH
Confidence 1134567777777666666777777777765422211 012245678899999987422 23689999
Q ss_pred HHHHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhHHhHHHHHHHhHHHHhcCCchhhH
Q 041480 926 CRALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEEQASEEWLRKLSASLLGNRKRSFL 1005 (1122)
Q Consensus 926 a~AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~~~L 1005 (1122)
..+|..++..+...=.++....+ +.+...+. +.. ..--..+...+..++..+=..-+..++
T Consensus 155 l~~l~~~~~~~~~~l~~~~~~ll-------~~l~~~L~----------~~~--~~vR~~a~~al~~l~~~~~~~~~~~~l 215 (1230)
T 1u6g_C 155 LDIMADMLSRQGGLLVNFHPSIL-------TCLLPQLT----------SPR--LAVRKRTIIALGHLVMSCGNIVFVDLI 215 (1230)
T ss_dssp HHHHHHHHHHTCSSCTTTHHHHH-------HHHGGGGG----------CSS--HHHHHHHHHHHHHHTTTC----CTTHH
T ss_pred HHHHHHHHHHhHhHHHHHHHHHH-------HHHHHHHc----------CCc--HHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999998543211112222211 11111110 000 000111222233322111111123456
Q ss_pred HHHHHhhccCC-chhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCC
Q 041480 1006 ETVSKILGSRN-SDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQNGEQPQQKVLASMSLLNFSKI 1080 (1122)
Q Consensus 1006 ~aL~~~l~s~~-~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~ 1080 (1122)
..|.+.|.+.. ..+.+.++-++. .+....++ .+... ...++|.+++.++ +.+-+-|..|..++-.|+..
T Consensus 216 ~~l~~~L~~~~~~~~r~~a~~~l~---~l~~~~~~-~~~~~-l~~l~~~ll~~l~-d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 216 EHLLSELSKNDSMSTTRTYIQCIA---AISRQAGH-RIGEY-LEKIIPLVVKFCN-VDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHHHTCSSCSCTTHHHHHH---HHHHHSSG-GGTTS-CTTHHHHHHHHHS-SCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHhccCCchhHHHHHHHHHH---HHHHHhHH-HHHHH-HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Confidence 77777775442 223322222222 22222333 23221 2357888888887 34455677777777777764
No 143
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=89.00 E-value=0.23 Score=56.49 Aligned_cols=67 Identities=22% Similarity=0.389 Sum_probs=52.6
Q ss_pred CCCCCcccccccchhccCCccc-CCCcc--cchHHHHHHHHh-CCCCCCCCCCcCCCCCCCcchHHHHHHHH
Q 041480 642 TSIPQDFICPLTGQLFEEPVTL-ESGQT--FECEAIKEWIEQ-GNRTCPVTGKYLACPSLPLTNFILKRVID 709 (1122)
Q Consensus 642 ~~ipeef~CPIc~elm~DPVtl-~cGhT--ycRscIe~wl~~-g~~tCP~trq~L~~~~ll~pN~~Lk~lIe 709 (1122)
..+.-.+.|||+...|+.||-- .|.|. |+...+.....+ +...||+|++.+....| .....+..++.
T Consensus 210 ~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL-~ID~~~~~IL~ 280 (360)
T 4fo9_A 210 TSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESL-ILDGLFMEILN 280 (360)
T ss_dssp CCEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGE-EEBHHHHHHHT
T ss_pred eeeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHe-EEcHHHHHHHH
Confidence 3445578999999999999975 89988 999998886654 66799999999887774 66655555544
No 144
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=88.70 E-value=21 Score=42.78 Aligned_cols=140 Identities=14% Similarity=0.146 Sum_probs=91.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVS 848 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~ 848 (1122)
.++..|..+|.+.+.+.|.-++..|..++..++ ..+. .....++.+|...+...|..|+.+|..|+.. .| +.
T Consensus 313 ~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~-~n--v~ 384 (618)
T 1w63_A 313 LAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVNG-NN--IR 384 (618)
T ss_dssp HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS-SS--TH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHccc-cc--HH
Confidence 356778888887777778777777776665322 2222 2456788888888889999999999998632 22 11
Q ss_pred HHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHH
Q 041480 849 TLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRA 928 (1122)
Q Consensus 849 ~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~A 928 (1122)
..+..|+.++...+.+-+..++.+|.+++.-..++. .-.|+.|+.+|+.... ..+..+..+
T Consensus 385 ------------~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~-----~~~v~~ll~lL~~~~~--~v~~~~~~~ 445 (618)
T 1w63_A 385 ------------GMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSK-----RWHIDTIMRVLTTAGS--YVRDDAVPN 445 (618)
T ss_dssp ------------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH-----HHHHHHHHHHHHHTGG--GSCSSHHHH
T ss_pred ------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH-----HHHHHHHHHHHHhccc--hhHHHHHHH
Confidence 234567777777788888888888888876322222 2347778888866442 234445555
Q ss_pred HHHhhcC
Q 041480 929 LLILGGR 935 (1122)
Q Consensus 929 L~~Lag~ 935 (1122)
+..+..+
T Consensus 446 l~~ii~~ 452 (618)
T 1w63_A 446 LIQLITN 452 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555543
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=86.93 E-value=8.4 Score=43.57 Aligned_cols=149 Identities=13% Similarity=0.041 Sum_probs=90.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHh
Q 041480 774 LICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRN 853 (1122)
Q Consensus 774 LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~ 853 (1122)
++..|.+++.+++.+++--|...-+.|..--..-...+++..|+.+...++...+.+|+++|.+|..... +.. +
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~--Gm~----g 196 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD--GML----G 196 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH--HHH----H
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc--ccc----c
Confidence 4455666777777788777766333465555555666789999999999999999999999999853311 111 1
Q ss_pred hhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhc----------cHHHHHHHHhccC-CChHHH
Q 041480 854 VQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREA----------AVDAITVALEESL-TDEKIQ 922 (1122)
Q Consensus 854 I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReG----------AV~aLV~LL~~g~-~~~~~q 922 (1122)
|.. ....|..|..++.+........|..+|..++...+.+-..+.++= ....||.+|.... .+...|
T Consensus 197 vvs--~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq 274 (339)
T 3dad_A 197 VVA--HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL 274 (339)
T ss_dssp HHH--CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred hhC--CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence 221 235777777777754444444455666666655443333222211 1347899996322 333466
Q ss_pred HHHHHHHHH
Q 041480 923 EKCCRALLI 931 (1122)
Q Consensus 923 e~Aa~AL~~ 931 (1122)
.+|. +|.|
T Consensus 275 ~~am-tLIN 282 (339)
T 3dad_A 275 VYTV-TLIN 282 (339)
T ss_dssp HHHH-HHHH
T ss_pred HHHH-HHHH
Confidence 6644 4443
No 146
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=84.62 E-value=11 Score=40.16 Aligned_cols=153 Identities=11% Similarity=0.040 Sum_probs=96.1
Q ss_pred cHHHHHHhh-cCCCHHHHHHHHHHHHHhhhcc--hhhH-HHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCcc
Q 041480 770 GLQFLICRF-ESGKLEEKARVAALMCCCIEAD--AGCR-NQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRR 845 (1122)
Q Consensus 770 aIp~LV~LL-~sgs~Eek~~AaalL~~La~~D--~snR-~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k 845 (1122)
.+..|...| ...+...+..++.+|..++..= ..-. .++. .-++++++.|.......+..|..+|..++..-..-
T Consensus 61 ~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~ 138 (249)
T 2qk1_A 61 LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL 138 (249)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc
Confidence 355666777 4556655655555555554210 0111 2222 25789999998877888888888888876432100
Q ss_pred chHHHHHhhhhhh-hhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCCh--hhhhhhh-hccHHHHHHHHhccCCChHH
Q 041480 846 DVSTLLRNVQNEE-LVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEP--RKYSIYR-EAAVDAITVALEESLTDEKI 921 (1122)
Q Consensus 846 ~~~~~L~~I~~eG-~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~Ep--nK~sIvR-eGAV~aLV~LL~~g~~~~~~ 921 (1122)
+ . .+ .-..|..|+..+++..+..|..+..+|..+...... .+..-+= ...|+.|+.+|..... .+
T Consensus 139 -~-------~-~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~--~V 207 (249)
T 2qk1_A 139 -A-------S-SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQP--AI 207 (249)
T ss_dssp -C-------T-TCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSH--HH
T ss_pred -c-------c-CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCH--HH
Confidence 0 0 00 113567788889988887888888777776542221 2222232 6789999999976643 69
Q ss_pred HHHHHHHHHHhhcC
Q 041480 922 QEKCCRALLILGGR 935 (1122)
Q Consensus 922 qe~Aa~AL~~Lag~ 935 (1122)
|..|..+|..++..
T Consensus 208 R~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 208 RTIGFESFAILIKI 221 (249)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999864
No 147
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=83.10 E-value=0.67 Score=49.94 Aligned_cols=49 Identities=14% Similarity=0.346 Sum_probs=39.6
Q ss_pred cccccccchhccCCccc-CCCcccchHHHHHHHHh-CCCCCCCCCCcCCCC
Q 041480 647 DFICPLTGQLFEEPVTL-ESGQTFECEAIKEWIEQ-GNRTCPVTGKYLACP 695 (1122)
Q Consensus 647 ef~CPIc~elm~DPVtl-~cGhTycRscIe~wl~~-g~~tCP~trq~L~~~ 695 (1122)
-..|.||.++..-=+.- .|++.|-..|+..|+.. +...||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 45799999998755544 38999999999999986 467999999876543
No 148
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=81.41 E-value=14 Score=41.77 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHh
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELL 820 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL 820 (1122)
.+++.|.+++. + +.+=+..++..+|+..|+++...++.+.+..++.+|..+|.....--..|.....|.-|..++
T Consensus 137 ~aLfsLk~~~q---~--D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv 211 (339)
T 3dad_A 137 RSLFSLKQIFQ---E--DKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLC 211 (339)
T ss_dssp HHHHHHHHHHH---T--CTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGG
T ss_pred HHHHHHHHHhh---c--chHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHH
Confidence 45555655432 1 123455678889999999999988999999999999999875433223333455677888888
Q ss_pred hcCChhHHHHHHHHHHHHHcccCccchHHHHHhhh---hhhhhhhHHHHHHHhh---cCCcchHHHHHHHHHh
Q 041480 821 HSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQ---NEELVNAMHVLLLYLQ---RSPPEQRPLFSILLLH 887 (1122)
Q Consensus 821 ~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~---~eG~~gaI~~Ll~lLq---sgs~~~k~lAA~aLln 887 (1122)
.+.....-..|+.+|..++...+.. .-.+..++. .+...--...|+.+|+ .++.+.+.. |.+|.|
T Consensus 212 ~s~~~~V~k~AL~LL~v~V~~se~~-~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~-amtLIN 282 (339)
T 3dad_A 212 ASLSRLVVKTALKLLLVFVEYSENN-APLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY-TVTLIN 282 (339)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH-HHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHccCccc-chHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH-HHHHHH
Confidence 8767777788888888887655422 111233222 1111113678888887 444444444 455554
No 149
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=78.40 E-value=2.1 Score=39.56 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=38.1
Q ss_pred cccccccchhc-----cCCccc--CCCcccchHHHHHHHHhCCCCCCCCCCcCC
Q 041480 647 DFICPLTGQLF-----EEPVTL--ESGQTFECEAIKEWIEQGNRTCPVTGKYLA 693 (1122)
Q Consensus 647 ef~CPIc~elm-----~DPVtl--~cGhTycRscIe~wl~~g~~tCP~trq~L~ 693 (1122)
.-+|.||++=. -+|.+. .|+...||.|.+--.+.|++.||.|+.++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 35799997654 245555 899999999999888889999999998775
No 150
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=76.03 E-value=38 Score=36.87 Aligned_cols=165 Identities=13% Similarity=0.018 Sum_probs=106.6
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhhc---chhhHHHHHhccchHHH
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESGKLEEKARVAALMCCCIEA---DAGCRNQMARNINVYSL 816 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sgs~Eek~~AaalL~~La~~---D~snR~~Iae~GaI~pL 816 (1122)
..++++|+.++...+.. -+..++ ....+.+++++.+.+.....+|+..|..+... ++++=.. .+..|
T Consensus 51 ~raL~~LeellK~~~~~----l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K-----l~~aL 120 (265)
T 3b2a_A 51 LRAFVALGEILKRADSD----LRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK-----AAKTL 120 (265)
T ss_dssp HHHHHHHHHHHHHSCHH----HHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHHHhcccc----ccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH-----HHHHH
Confidence 45788899998875321 122222 24678899999888877777777766555332 1111111 24578
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhh
Q 041480 817 LELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRK 896 (1122)
Q Consensus 817 V~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK 896 (1122)
..++.+++.-.+++|+..|..|....-.+ ..+..|..++.+-.+..|..+-.+|.+++...+ ++
T Consensus 121 ~dlik~~~~il~~eaae~Lgklkv~~~~~---------------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~-D~ 184 (265)
T 3b2a_A 121 VSLLESPDDMMRIETIDVLSKLQPLEDSK---------------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA-DS 184 (265)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHCCBSCCCH---------------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS-SC
T ss_pred HHHhcCCCchHHHHHHHHhCcCCcccchH---------------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC-CH
Confidence 88888999999999999999873222211 334556666677778889999999999877322 11
Q ss_pred hhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhc
Q 041480 897 YSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGG 934 (1122)
Q Consensus 897 ~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag 934 (1122)
. .=+..+.-+-.+|.+... -.++.|..+|..+.+
T Consensus 185 ~--i~~~I~~eI~elL~~eD~--~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 185 G--HLTLILDEIPSLLQNDNE--FIVELALDVLEKALS 218 (265)
T ss_dssp C--CGGGTTTTHHHHHTCSCH--HHHHHHHHHHHHHTT
T ss_pred H--HHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHc
Confidence 0 113344456677877643 588988888888875
No 151
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=74.93 E-value=17 Score=38.39 Aligned_cols=139 Identities=13% Similarity=0.129 Sum_probs=90.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVS 848 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~ 848 (1122)
+.+|.|..-+.-|++..+.....+|-.++.++++.-..|+ .-+..+|.+.+...|..|+.+|..+ ..|..
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~-----rdi~smltskd~~Dkl~aLnFi~al---Gen~~-- 176 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIV-----RDFMSMLSSKNREDKLTALNFIEAM---GENSF-- 176 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHH-----HHHHHHTSCSSHHHHHHHHHHHHTC---CTTTH--
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHH-----HHHHHHhcCCChHHHHHHHHHHHHH---hccCc--
Confidence 5566666667779999999988888888877765544444 4566788888888888888877654 34331
Q ss_pred HHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHH
Q 041480 849 TLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRA 928 (1122)
Q Consensus 849 ~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~A 928 (1122)
. -..-.++-|+.+|..+...-++-|+-+|.+|+...+- +|. +|...++-+... ++-++.....+
T Consensus 177 ---~-----yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-----lRk-ii~~kl~e~~D~--S~lv~~~V~eg 240 (253)
T 2db0_A 177 ---K-----YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-----LRK-VVIKRLEELNDT--SSLVNKTVKEG 240 (253)
T ss_dssp ---H-----HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-----HHH-HHHHHHHHCCCS--CHHHHHHHHHH
T ss_pred ---c-----ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-----HHH-HHHHHHHHhcCc--HHHHHHHHHHH
Confidence 0 1234677888888877777788888888888775331 222 233333333332 23467777777
Q ss_pred HHHhh
Q 041480 929 LLILG 933 (1122)
Q Consensus 929 L~~La 933 (1122)
|..|.
T Consensus 241 L~rl~ 245 (253)
T 2db0_A 241 ISRLL 245 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76664
No 152
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=74.70 E-value=88 Score=37.64 Aligned_cols=248 Identities=12% Similarity=0.102 Sum_probs=138.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhh-cCChhHHHHHHHHHHHHHcccCccch
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLH-SKQVKPRTNTVLLLIDLICLSRRRDV 847 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~-SGs~~aRenAv~aL~eLs~~~~~k~~ 847 (1122)
.++..|..+|.+.+.+.|--++..|..++...+. ...+. .....++..|. ..+...|..|+.+|..|+.. .| +
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~N--v 402 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAVK--THIETVINALKTERDVSVRQRAVDLLYAMCDR-SN--A 402 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HH--H
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHHH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hh--H
Confidence 3566788888878888888888888777654321 12222 24567888888 78888999999999998622 11 1
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHH
Q 041480 848 STLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCR 927 (1122)
Q Consensus 848 ~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~ 927 (1122)
-..+.-|+.|++..+.+-+..++.++..++.- ..-.-.-.|+.|+.+|..+.. .....+..
T Consensus 403 ------------~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k-----~~~~~~~~v~~Ll~ll~~~~~--~v~~ev~~ 463 (621)
T 2vgl_A 403 ------------QQIVAEMLSYLETADYSIREEIVLKVAILAEK-----YAVDYTWYVDTILNLIRIAGD--YVSEEVWY 463 (621)
T ss_dssp ------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-----HCSSTHHHHHHHHHHHHHHGG--GSCSHHHH
T ss_pred ------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-----cCCcHHHHHHHHHHHHHhhcc--cchHHHHH
Confidence 12345677788877777788888888877641 111124458889999876432 13334555
Q ss_pred HHHHhhcCCCCCchhhhhhhhhccccccccccccCCCCCCCCCCCCCCCCCchhH-HhHHHHH-HHhHHHHhcCCc---h
Q 041480 928 ALLILGGRFSFSREVANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLDDEE-QASEEWL-RKLSASLLGNRK---R 1002 (1122)
Q Consensus 928 AL~~Lag~fS~sGe~~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~~ee-~~~~~w~-rk~a~~Lv~~G~---~ 1002 (1122)
.+..+...+....+. +... .+..+. ++... +. ..+-.|. ..-+..+-+... .
T Consensus 464 ~l~~ii~~~~~~~~~-~~~~---------l~~~l~-----------~~~~~--~~li~~~~wilGEy~~~~~~~~~~~p~ 520 (621)
T 2vgl_A 464 RVIQIVINRDDVQGY-AAKT---------VFEALQ-----------APACH--ENLVKVGGYILGEFGNLIAGDPRSSPL 520 (621)
T ss_dssp HHHHHHGGGCSCHHH-HHHH---------HHHHHT-----------SSSCC--HHHHHHHHHHHHHHTHHHHSSTTSCHH
T ss_pred HHHHHHhCChhHHHH-HHHH---------HHHHHc-----------Cccch--HHHHHHHHHHhcchHHHhcccCCCCHH
Confidence 666665433222111 1111 111110 00000 00 0112255 222222222221 1
Q ss_pred hhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhh-------cCCCChhhHHHHHHHhh
Q 041480 1003 SFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEIL-------QNGEQPQQKVLASMSLL 1075 (1122)
Q Consensus 1003 ~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L-------~~~~~~eer~LA~~aL~ 1075 (1122)
.+|..|.+.+...+..+....|++++=+.. ..|+ +.+.+..+| +.+-++.+|..=.+.|+
T Consensus 521 ~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~---~~p~----------~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 521 IQFNLLHSKFHLCSVPTRALLLSTYIKFVN---LFPE----------VKATIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHH---HCGG----------GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHH---HChH----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 457788887888888888888888775432 2332 122333333 23445667777666665
Q ss_pred hh
Q 041480 1076 NF 1077 (1122)
Q Consensus 1076 ~~ 1077 (1122)
..
T Consensus 588 ~~ 589 (621)
T 2vgl_A 588 TV 589 (621)
T ss_dssp HS
T ss_pred cc
Confidence 43
No 153
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=73.14 E-value=34 Score=43.77 Aligned_cols=131 Identities=13% Similarity=0.001 Sum_probs=77.7
Q ss_pred cHHHHHHhhcC-CCHHHHHHHHHHHHH-hhhcchhhHHHHHhccchHHHHHHhhc-CChhHHHHHHHHHHHHHcccCccc
Q 041480 770 GLQFLICRFES-GKLEEKARVAALMCC-CIEADAGCRNQMARNINVYSLLELLHS-KQVKPRTNTVLLLIDLICLSRRRD 846 (1122)
Q Consensus 770 aIp~LV~LL~s-gs~Eek~~AaalL~~-La~~D~snR~~Iae~GaI~pLV~LL~S-Gs~~aRenAv~aL~eLs~~~~~k~ 846 (1122)
.++.|++.|.. .++-.|..++.++.+ ++- -+ + ..+|..|++.+.+ .+...|..|+.+|..+..-+. .
T Consensus 542 ~~~~li~~L~~~~dp~vRygaa~alglAyaG-TG-n------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~-e- 611 (963)
T 4ady_A 542 LADDLITKMLASDESLLRYGGAFTIALAYAG-TG-N------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY-T- 611 (963)
T ss_dssp GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-SC-C------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-S-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CC-C------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-H-
Confidence 44666666653 444444444333321 221 11 1 1246667776643 456678888877776542221 1
Q ss_pred hHHHHHhhhhhhhhhhHHHHHH-HhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHH
Q 041480 847 VSTLLRNVQNEELVNAMHVLLL-YLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKC 925 (1122)
Q Consensus 847 ~~~~L~~I~~eG~~gaI~~Ll~-lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~A 925 (1122)
+++.++. +.+.+.+..+-.|+.||-.++.... + ..||+.|..++.... ..++..|
T Consensus 612 ---------------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~-~------~~aid~L~~L~~D~d--~~Vrq~A 667 (963)
T 4ady_A 612 ---------------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG-L------QSAIDVLDPLTKDPV--DFVRQAA 667 (963)
T ss_dssp ---------------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC-C------HHHHHHHHHHHTCSS--HHHHHHH
T ss_pred ---------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC-c------HHHHHHHHHHccCCC--HHHHHHH
Confidence 2233443 3456778888889989988876422 2 457888888876544 3688999
Q ss_pred HHHHHHhhc
Q 041480 926 CRALLILGG 934 (1122)
Q Consensus 926 a~AL~~Lag 934 (1122)
+.||..++.
T Consensus 668 i~ALG~Ig~ 676 (963)
T 4ady_A 668 MIALSMILI 676 (963)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHHhc
Confidence 999988863
No 154
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=73.09 E-value=15 Score=39.05 Aligned_cols=193 Identities=9% Similarity=0.065 Sum_probs=104.6
Q ss_pred HHhhcCCcchHHHHHHHHHh-hccCCChhhhhhhh-hccHHHHHHHHh-ccCCChHHHHHHHHHHHHhhcCCC-CCch-h
Q 041480 868 LYLQRSPPEQRPLFSILLLH-LDLLVEPRKYSIYR-EAAVDAITVALE-ESLTDEKIQEKCCRALLILGGRFS-FSRE-V 942 (1122)
Q Consensus 868 ~lLqsgs~~~k~lAA~aLln-Lsll~EpnK~sIvR-eGAV~aLV~LL~-~g~~~~~~qe~Aa~AL~~Lag~fS-~sGe-~ 942 (1122)
..+++.....+..|...|.. +............. .+.++.|...|. .... .++..|+.||..|+..+. ..=+ +
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~--~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANI--QAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHhcccccccHH
Confidence 33466666667767767777 64211100000111 355778888884 4333 588999999999985321 1111 2
Q ss_pred hhhhhhhccccccccccccCCCCCCCCCCCCCCCCCc-hhHHhHHHHHHHhHHHHhcCC-chhhHHHHHHhhccCCchhH
Q 041480 943 ANESWILKPAGFNDRCEGNSLDNDENDLPVDDSTPLD-DEEQASEEWLRKLSASLLGNR-KRSFLETVSKILGSRNSDLV 1020 (1122)
Q Consensus 943 ~~~~~LlK~AG~~~~~~~~~~~~~~~d~~~d~~~~~~-~ee~~~~~w~rk~a~~Lv~~G-~~~~L~aL~~~l~s~~~~l~ 1020 (1122)
+....| ..+.+.+. |+...+. .-..+.+.|...+.. ..-++ --.+++.|..+|+++++.+.
T Consensus 101 y~~~ll---p~ll~~l~-------------dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk 163 (249)
T 2qk1_A 101 YVSLVF---TPLLDRTK-------------EKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIR 163 (249)
T ss_dssp HHHHHH---HHHHHGGG-------------CCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHH---HHHHHHHc-------------CCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHH
Confidence 333222 11111111 2211110 011222222222110 01113 44788999999999999998
Q ss_pred HHHHHHHHHHHhhhccCCCchhhHh-hH-HHhHHHHHHhhcCCCChhhHHHHHHHhhhhhCCcch
Q 041480 1021 SVCLTTVAWLSHALSAQPDAEFQLS-AF-SAVISQLKEILQNGEQPQQKVLASMSLLNFSKIPEC 1083 (1122)
Q Consensus 1021 ~acL~t~aWl~~~L~~~~~t~~~~~-A~-~~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~~~~ 1083 (1122)
..+|. |+.+.+...+...-+.. -. ..++|.|.++|+ +..-+-|.-|.-+|-.+.+.=|.
T Consensus 164 ~~al~---~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~-D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 164 MECTQ---LFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN-DTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHH---HHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHH---HHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCH
Confidence 88875 55566665554211222 23 579999999998 55677888888877777765443
No 155
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=72.18 E-value=1.6e+02 Score=35.44 Aligned_cols=99 Identities=12% Similarity=-0.016 Sum_probs=64.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHh--hcCChhHHHHHHHHHHHHHcccCccchHHHH
Q 041480 774 LICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELL--HSKQVKPRTNTVLLLIDLICLSRRRDVSTLL 851 (1122)
Q Consensus 774 LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL--~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L 851 (1122)
+.+-|.+.++-.+.-|+..|.++.. ++ +++ .-++++..+| ...+...|.+|+.++..+.......
T Consensus 116 l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~------ 182 (621)
T 2vgl_A 116 IKNDLASRNPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL------ 182 (621)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG------
T ss_pred HHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh------
Confidence 4444555666666666666765532 11 333 2457888899 6778899999999999987543311
Q ss_pred HhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhcc
Q 041480 852 RNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDL 890 (1122)
Q Consensus 852 ~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsl 890 (1122)
+.. -+.+..|..+|...++.-+..|+.+|..++.
T Consensus 183 --~~~---~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 183 --VPM---GDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp --CCC---CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred --cCc---hhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 111 1567777788877777777777777777754
No 156
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=66.40 E-value=1.3e+02 Score=38.55 Aligned_cols=224 Identities=15% Similarity=0.143 Sum_probs=124.2
Q ss_pred chHHHHHHhhcCChhHHHHHHHHHHHHHcccCcc-chHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhcc
Q 041480 812 NVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRR-DVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDL 890 (1122)
Q Consensus 812 aI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k-~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsl 890 (1122)
.+..|...+...... +.|+.++..|+...... ....++ ++.++.++..+-.....-+..|..++..|..
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~--------~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~ 124 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI--------VQLVPAICTNAGNKDKEIQSVASETLISIVN 124 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH--------HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch--------HHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 444555555443222 99999999987443322 222222 2445666655554444444444444444432
Q ss_pred CCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHhhcCCCCCchhhhhhhh-hccccccccccccCCCCCCCC
Q 041480 891 LVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLILGGRFSFSREVANESWI-LKPAGFNDRCEGNSLDNDEND 969 (1122)
Q Consensus 891 l~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~Lag~fS~sGe~~~~~~L-lK~AG~~~~~~~~~~~~~~~d 969 (1122)
...|.- + ...+|+|+..|..+.- =..|.-|..+|..|+.. .. ..+ ..-..+.+....-|-
T Consensus 125 ~~~~~a--~--~~~~~~~~~~~~~~~k-w~~k~~~l~~~~~~~~~---~~-----~~~~~~~~~~~p~~~~~~~------ 185 (986)
T 2iw3_A 125 AVNPVA--I--KALLPHLTNAIVETNK-WQEKIAILAAFSAMVDA---AK-----DQVALRMPELIPVLSETMW------ 185 (986)
T ss_dssp HSCGGG--H--HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHH---SH-----HHHHHHHHHHHHHHHHHTT------
T ss_pred hCCHHH--H--HHHHHHHHHHhccccc-hHHHHHHHHHHHHHHHH---hH-----HHHHHhccchhcchHhhcc------
Confidence 222222 2 4568888888876542 13677777888888752 11 122 233344444443332
Q ss_pred CCCCCCCCCchhHHhHHHHHHHhHHHHhcCCchhhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCC-chhhHhhHH
Q 041480 970 LPVDDSTPLDDEEQASEEWLRKLSASLLGNRKRSFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPD-AEFQLSAFS 1048 (1122)
Q Consensus 970 ~~~d~~~~~~~ee~~~~~w~rk~a~~Lv~~G~~~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~-t~~~~~A~~ 1048 (1122)
|-. .+-.+++..-..++...+-+..--+|+..|.+||.+... .--|+ +.|+..+= +.+...+-+
T Consensus 186 ---d~k---~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~--~~~~~-------~~l~~~tfv~~v~~~~l~ 250 (986)
T 2iw3_A 186 ---DTK---KEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE--VPETV-------HLLGATTFVAEVTPATLS 250 (986)
T ss_dssp ---CSS---HHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH--HHHHH-------HHHTTCCCCSCCCHHHHH
T ss_pred ---cCc---HHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh--hHHHH-------HHhhcCeeEeeecchhHH
Confidence 211 122344445555555334344555999999999998844 66663 56666553 236788888
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHhhhhhCC
Q 041480 1049 AVISQLKEILQNGEQPQQKVLASMSLLNFSKI 1080 (1122)
Q Consensus 1049 ~ll~~Lv~~L~~~~~~eer~LA~~aL~~~~~~ 1080 (1122)
.++|-|..-|.-. ...-|=-+++..-|+.+-
T Consensus 251 ~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~l 281 (986)
T 2iw3_A 251 IMVPLLSRGLNER-ETGIKRKSAVIIDNMCKL 281 (986)
T ss_dssp HHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhccC-cchhheeeEEEEcchhhh
Confidence 9999999999844 444344455556665554
No 157
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=63.10 E-value=1.2e+02 Score=38.95 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=107.9
Q ss_pred hHHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhhhcchhhHHHHHhc--cchHHH
Q 041480 740 ETAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICRFESG-KLEEKARVAALMCCCIEADAGCRNQMARN--INVYSL 816 (1122)
Q Consensus 740 ~aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~LL~sg-s~Eek~~AaalL~~La~~D~snR~~Iae~--GaI~pL 816 (1122)
.+|..++..|+..+.. ++ + ...+|.|+..|..+ -=..+..++.+|-.++. ..+..++.. .-||.+
T Consensus 113 ~aa~~~~~~~~~~~~~-----~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~---~~~~~~~~~~~~~~p~~ 180 (986)
T 2iw3_A 113 SVASETLISIVNAVNP-----VA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVD---AAKDQVALRMPELIPVL 180 (986)
T ss_dssp HHHHHHHHHHHHHSCG-----GG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCH-----HH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHH---HhHHHHHHhccchhcch
Confidence 3455566666665532 11 1 35678888888654 34567777777777664 234555543 234444
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHcccCccchHHHHHhhhhh----h---------------------hhhhHHH-HHHHh
Q 041480 817 LELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLLRNVQNE----E---------------------LVNAMHV-LLLYL 870 (1122)
Q Consensus 817 V~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L~~I~~e----G---------------------~~gaI~~-Ll~lL 870 (1122)
-+....-..+.+..|..++..++..=.|+.+..|+-.|++. . .+..|-| |..-|
T Consensus 181 ~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l 260 (986)
T 2iw3_A 181 SETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGL 260 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred HhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhh
Confidence 44555556789999999999998877776554433322221 1 1223333 33446
Q ss_pred hcCCcchHHHHHHHHHhhccCCC-hhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 041480 871 QRSPPEQRPLFSILLLHLDLLVE-PRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLIL 932 (1122)
Q Consensus 871 qsgs~~~k~lAA~aLlnLsll~E-pnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~L 932 (1122)
...+...+.-+|...-|+|.+++ |.-..-+=..-+|.|-.....-.. ..+|+.|.+||..|
T Consensus 261 ~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~-pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 261 NERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIAD-PEAREVTLRALKTL 322 (986)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCS-HHHHHHHHHHHHHH
T ss_pred ccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCC-HHHHHHHHHHHHHH
Confidence 66677888889999999999775 333322333334444444333333 36999999999998
No 158
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=53.45 E-value=1.2e+02 Score=34.56 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=66.8
Q ss_pred hccHHHHHHhhcC----C-------CHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHH
Q 041480 768 IGGLQFLICRFES----G-------KLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLI 836 (1122)
Q Consensus 768 aGaIp~LV~LL~s----g-------s~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~ 836 (1122)
.+|+..|+.+|.. . +.+.+..++..|..++.....-...+.....+..|+.+|.+.....|..|+.+|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 5778888888741 1 1222333444444444322223334445578899999999999999999999999
Q ss_pred HHHcccCccc-hHHHHHhhhhh---hhhhhHHHHHHHhhcCCcchHHHHHHHHHh
Q 041480 837 DLICLSRRRD-VSTLLRNVQNE---ELVNAMHVLLLYLQRSPPEQRPLFSILLLH 887 (1122)
Q Consensus 837 eLs~~~~~k~-~~~~L~~I~~e---G~~gaI~~Ll~lLqsgs~~~k~lAA~aLln 887 (1122)
.++..+.... -..++.++..- |...-..+++..++.+....=..++..|.|
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN 242 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN 242 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 9887765211 22234333321 222345566766665433333333344443
No 159
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=48.60 E-value=5.4e+02 Score=33.00 Aligned_cols=84 Identities=8% Similarity=0.052 Sum_probs=49.9
Q ss_pred hHHHHhcCCch--hhHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhHHHHHHhhcC-CCChhhHH
Q 041480 992 LSASLLGNRKR--SFLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVISQLKEILQN-GEQPQQKV 1068 (1122)
Q Consensus 992 ~a~~Lv~~G~~--~~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll~~Lv~~L~~-~~~~eer~ 1068 (1122)
+|-.++..|++ ..+..|.....+.+..++++.+++.+ -.+.-..++.- .=-..++.+|...... .++..-|-
T Consensus 634 lALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG---~Ig~gtnna~~--~rva~~l~~L~~~~~dk~~d~~~~f 708 (963)
T 4ady_A 634 FALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALS---MILIQQTEKLN--PQVADINKNFLSVITNKHQEGLAKF 708 (963)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHH---HHSTTCCTTTC--TTHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHH---HHhcCCccccc--hHHHHHHHHHHHHHhcccccHHHHH
Confidence 55667766554 67889999899999999999877544 22222222210 1123455566666652 34455677
Q ss_pred HHHHHhhhhhCC
Q 041480 1069 LASMSLLNFSKI 1080 (1122)
Q Consensus 1069 LA~~aL~~~~~~ 1080 (1122)
.|.+|+=-+-.|
T Consensus 709 ga~iAqGll~aG 720 (963)
T 4ady_A 709 GACVAQGIMNAG 720 (963)
T ss_dssp HHHHHHHHHTTG
T ss_pred HHHHHHHHHhcC
Confidence 777766444333
No 160
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=42.45 E-value=69 Score=33.76 Aligned_cols=121 Identities=13% Similarity=0.161 Sum_probs=66.5
Q ss_pred hccHHHHHHhhcC----CC-------HHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHH
Q 041480 768 IGGLQFLICRFES----GK-------LEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLI 836 (1122)
Q Consensus 768 aGaIp~LV~LL~s----gs-------~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~ 836 (1122)
.||+..|+..|.. +. .+.+..++..|..++.....-...+.....+..|+..|.+.....|..|+.+|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4777778877641 11 122223333344344322223334455567888999998889999999999999
Q ss_pred HHHcccCccc-hHHHHHhhhhh---hhhhhHHHHHHHhhcCCcchHHHHHHHHHhh
Q 041480 837 DLICLSRRRD-VSTLLRNVQNE---ELVNAMHVLLLYLQRSPPEQRPLFSILLLHL 888 (1122)
Q Consensus 837 eLs~~~~~k~-~~~~L~~I~~e---G~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnL 888 (1122)
.++..+...+ -..++.++..- +...-..+++..++......-..+...|.|-
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~ 177 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA 177 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 9887765323 22344444322 1222344566666644333334444444443
No 161
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=39.16 E-value=2.1e+02 Score=30.06 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhHHHhhccHHHHHHh-hcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHH
Q 041480 741 TAIFILEQLLTVFSDQERITNAKHLISIGGLQFLICR-FESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLEL 819 (1122)
Q Consensus 741 aAl~~LekLls~~~~ee~~~Nr~~IasaGaIp~LV~L-L~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~L 819 (1122)
.++.+|..++..+.................+|.|+.. |.......+..+...|..++...... . ..++.++..
T Consensus 74 ~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~ 147 (278)
T 4ffb_C 74 QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPF 147 (278)
T ss_dssp HHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGG
T ss_pred HHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHH
Confidence 3455566665544321111111112223456777754 65566666666666655444321100 0 123455666
Q ss_pred hhcCChhHHHHHHHHHHHHHc
Q 041480 820 LHSKQVKPRTNTVLLLIDLIC 840 (1122)
Q Consensus 820 L~SGs~~aRenAv~aL~eLs~ 840 (1122)
+.+.+.+.+..++.+|..+..
T Consensus 148 l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 148 FEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp GGCSCHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHH
Confidence 777889999999999988753
No 162
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=37.41 E-value=36 Score=31.47 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=25.6
Q ss_pred CCCchhHhHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 041480 376 ESNKPRKMKLLEKVYNEILDSGTYQFAVYYKDWLTEGIEDPSVPTIQIPS 425 (1122)
Q Consensus 376 ~~~~~~k~k~Lek~Y~e~lD~~tr~fA~YYKdwL~~g~e~p~~P~~~~P~ 425 (1122)
.++|.++=++|+++- +-|..=.+.|-..|++.|+... +|+.+||+
T Consensus 57 ~GeqqEqdrAlqel~-qeL~tl~~pFL~KYR~fLks~E----~ps~~pPS 101 (102)
T 1z8u_A 57 TGEPQERDKALQELR-QELNTLANPFLAKYRDFLKSHE----LPSHPPPS 101 (102)
T ss_dssp CSCHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTCC--------------
T ss_pred cccHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHhccc----CCCCCCCC
Confidence 456666666666554 3466777899999999999865 44455554
No 163
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=36.97 E-value=78 Score=31.88 Aligned_cols=71 Identities=8% Similarity=0.079 Sum_probs=55.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcch-hhHHHHHhccchHHHHHHhhc-CChhHHHHHHHHHHHHH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADA-GCRNQMARNINVYSLLELLHS-KQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~-snR~~Iae~GaI~pLV~LL~S-Gs~~aRenAv~aL~eLs 839 (1122)
.++..|.+.|..+++.++..|+.+|-.|++..+ .....|+....+..|+.++.. .+..+|..++.+|....
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 466778888988999999999999988887533 345567777788888888865 45788999988888765
No 164
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=35.56 E-value=72 Score=31.25 Aligned_cols=71 Identities=10% Similarity=0.125 Sum_probs=56.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchh-hHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAG-CRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~s-nR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs 839 (1122)
.++..|.+.|..+++.++..|+.+|-.|++..+. ....|+....+.-|+.++...+..+|..++.+|...+
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 5677888899889999999999999888874433 3456777777888888887777889999998888765
No 165
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=34.48 E-value=15 Score=30.68 Aligned_cols=19 Identities=32% Similarity=0.915 Sum_probs=15.9
Q ss_pred cCCccCCCCCcccccccch
Q 041480 637 KGSFLTSIPQDFICPLTGQ 655 (1122)
Q Consensus 637 ~~~~~~~ipeef~CPIc~e 655 (1122)
.|+.+.++|+++.||+|+.
T Consensus 26 pGt~f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 26 PGTKFEDLPDDWACPVCGA 44 (52)
T ss_dssp SSCCTTSSCTTCCCSSSCC
T ss_pred CCCchHHCCCCCcCCCCCC
Confidence 4566889999999999964
No 166
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=33.68 E-value=86 Score=31.85 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=56.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcch-hhHHHHHhccchHHHHHHhhc------CChhHHHHHHHHHHHHH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADA-GCRNQMARNINVYSLLELLHS------KQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~-snR~~Iae~GaI~pLV~LL~S------Gs~~aRenAv~aL~eLs 839 (1122)
.++..|.+.|.+++..++..|+.+|=.|++..+ .....|+....+..|+.++.. ....+|..++.+|.+..
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456778889999999999999999988887533 345577887888889998852 24689999999998875
No 167
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=32.93 E-value=14 Score=31.20 Aligned_cols=19 Identities=42% Similarity=1.003 Sum_probs=15.8
Q ss_pred cCCccCCCCCcccccccch
Q 041480 637 KGSFLTSIPQDFICPLTGQ 655 (1122)
Q Consensus 637 ~~~~~~~ipeef~CPIc~e 655 (1122)
.|+-+.++|+++.||+|+.
T Consensus 26 pGt~fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 26 PGTDFKDIPDDWVCPLCGV 44 (54)
T ss_dssp TTCCGGGSCTTCBCTTTCC
T ss_pred CCCChhHCCCCCcCcCCCC
Confidence 4566889999999999964
No 168
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=32.46 E-value=92 Score=30.88 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=56.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcch-hhHHHHHhccchHHHHHHhhc------CChhHHHHHHHHHHHHH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADA-GCRNQMARNINVYSLLELLHS------KQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~-snR~~Iae~GaI~pLV~LL~S------Gs~~aRenAv~aL~eLs 839 (1122)
.++..|.+.|.++++.++..|+.+|=.|++..+ .....|+....+..|+.++.. .+..+|..++.+|.+.+
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 567788899999999999999999988887543 355677777788888888863 25688999988888865
No 169
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=32.44 E-value=3.3e+02 Score=28.56 Aligned_cols=145 Identities=8% Similarity=0.075 Sum_probs=76.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhhc---chhhHHHH--HhccchHHHHH-HhhcCChhHHHHHHHHHHHHHcccCcc
Q 041480 772 QFLICRFESGKLEEKARVAALMCCCIEA---DAGCRNQM--ARNINVYSLLE-LLHSKQVKPRTNTVLLLIDLICLSRRR 845 (1122)
Q Consensus 772 p~LV~LL~sgs~Eek~~AaalL~~La~~---D~snR~~I--ae~GaI~pLV~-LL~SGs~~aRenAv~aL~eLs~~~~~k 845 (1122)
+.+-+.+...+...+..++.+|..++.. ....+... .-...++.|++ .|.++....|..|..+|..++......
T Consensus 58 ~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~ 137 (278)
T 4ffb_C 58 TLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI 137 (278)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH
Confidence 4455566556666666666555544321 11111111 11234566665 466667788999999888876332211
Q ss_pred chHHHHHhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccC-C-C--hhhhhhhhhccHHHHHHHHhccCCChHH
Q 041480 846 DVSTLLRNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLL-V-E--PRKYSIYREAAVDAITVALEESLTDEKI 921 (1122)
Q Consensus 846 ~~~~~L~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll-~-E--pnK~sIvReGAV~aLV~LL~~g~~~~~~ 921 (1122)
.-.+..++..+.+..|..+..+...|.++-.. + . +.+. .-...++.|..+|.+... .+
T Consensus 138 --------------~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~--~l~~i~~~l~k~l~d~~~--~V 199 (278)
T 4ffb_C 138 --------------TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQT--FLPELLKHVPQLAGHGDR--NV 199 (278)
T ss_dssp --------------HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHH--HHHHHGGGHHHHHTCSSH--HH
T ss_pred --------------HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchh--HHHHHHHHHHHHHhCCcH--HH
Confidence 11234455556666776666666666554210 0 0 0010 111234456666666543 68
Q ss_pred HHHHHHHHHHhhc
Q 041480 922 QEKCCRALLILGG 934 (1122)
Q Consensus 922 qe~Aa~AL~~Lag 934 (1122)
|..|..++.-|-.
T Consensus 200 R~aA~~l~~~ly~ 212 (278)
T 4ffb_C 200 RSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777754
No 170
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=31.53 E-value=1e+02 Score=30.64 Aligned_cols=71 Identities=11% Similarity=0.183 Sum_probs=56.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchh-hHHHHHhccchHHHHHHhhc------CChhHHHHHHHHHHHHH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAG-CRNQMARNINVYSLLELLHS------KQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~s-nR~~Iae~GaI~pLV~LL~S------Gs~~aRenAv~aL~eLs 839 (1122)
.++..|.+.|.+.++..+..|+.+|-.|++..+. ....|+....+..|+.++.. .+..+|..++.+|.+.+
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4677888999989999999999999888875433 35667777788889988853 35778999998888875
No 171
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=31.01 E-value=1.4e+02 Score=33.96 Aligned_cols=121 Identities=13% Similarity=0.160 Sum_probs=66.9
Q ss_pred hccHHHHHHhhc----CC-------CHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHH
Q 041480 768 IGGLQFLICRFE----SG-------KLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLI 836 (1122)
Q Consensus 768 aGaIp~LV~LL~----sg-------s~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~ 836 (1122)
.||+..|+..|. .+ +...+..++..|..++.....-...+.....+..|+..|.+.....|..|+.+|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 477777777763 11 1222233344444444322223334455677888899998888899999999999
Q ss_pred HHHcccCccc-hHHHHHhhhhh---hhhhhHHHHHHHhhcCCcchHHHHHHHHHhh
Q 041480 837 DLICLSRRRD-VSTLLRNVQNE---ELVNAMHVLLLYLQRSPPEQRPLFSILLLHL 888 (1122)
Q Consensus 837 eLs~~~~~k~-~~~~L~~I~~e---G~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnL 888 (1122)
.|+..+...+ -..++.++..- +...-+.+|+..+..+....-..++..|.|-
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~ 181 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA 181 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8887654222 22344443322 1223445677777654433334444444443
No 172
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=30.92 E-value=19 Score=32.72 Aligned_cols=19 Identities=37% Similarity=0.777 Sum_probs=15.7
Q ss_pred cCCccCCCCCcccccccch
Q 041480 637 KGSFLTSIPQDFICPLTGQ 655 (1122)
Q Consensus 637 ~~~~~~~ipeef~CPIc~e 655 (1122)
.|+-+.++|+++.||+|+.
T Consensus 50 pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 50 AGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp TTCCTTTSCTTCCCTTTCC
T ss_pred CCCChhHCCCCCcCCCCCC
Confidence 4556889999999999964
No 173
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=29.45 E-value=17 Score=30.29 Aligned_cols=19 Identities=37% Similarity=1.022 Sum_probs=15.8
Q ss_pred cCCccCCCCCcccccccch
Q 041480 637 KGSFLTSIPQDFICPLTGQ 655 (1122)
Q Consensus 637 ~~~~~~~ipeef~CPIc~e 655 (1122)
.|+.+.++|+++.||+|+.
T Consensus 25 pGt~f~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 25 PGTKFEDLPDDWVCPLCGA 43 (52)
T ss_dssp TTCCGGGSCTTCBCTTTCC
T ss_pred CCCCHhHCCCCCcCCCCCC
Confidence 4566889999999999964
No 174
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=29.13 E-value=45 Score=31.46 Aligned_cols=55 Identities=20% Similarity=0.371 Sum_probs=40.6
Q ss_pred cCCCCCcccccccchhccCCcccC--CC----cccchHHHHHHHHhCCCCCCCCCCcCCCCC
Q 041480 641 LTSIPQDFICPLTGQLFEEPVTLE--SG----QTFECEAIKEWIEQGNRTCPVTGKYLACPS 696 (1122)
Q Consensus 641 ~~~ipeef~CPIc~elm~DPVtl~--cG----hTycRscIe~wl~~g~~tCP~trq~L~~~~ 696 (1122)
+.=.++.+.||||+++=+.-|-+. -| .-|++.++.+....| ..=|++|.++...-
T Consensus 21 f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~-~~HPLSREpit~sM 81 (102)
T 2kkx_A 21 LQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEG-LPHPLTREPITASI 81 (102)
T ss_dssp TTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHT-CCCTTTCCCCCTTT
T ss_pred ccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcC-CCCCCccCCCCHhh
Confidence 334467889999999888887652 22 469999999988874 44588888877643
No 175
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=29.05 E-value=90 Score=32.95 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=55.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchh-hHHHHHhccchHHHHHHhhc-CChhHHHHHHHHHHHHH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAG-CRNQMARNINVYSLLELLHS-KQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~s-nR~~Iae~GaI~pLV~LL~S-Gs~~aRenAv~aL~eLs 839 (1122)
.++..|.+.|.+.++.++..|+.+|-.|++.-+. -...|+....+..|+.++.. .+..+|..++.+|.+.+
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4677888999999999999999999888875443 35667777777788888854 35678888888888875
No 176
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=28.56 E-value=17 Score=30.56 Aligned_cols=19 Identities=37% Similarity=0.819 Sum_probs=15.7
Q ss_pred cCCccCCCCCcccccccch
Q 041480 637 KGSFLTSIPQDFICPLTGQ 655 (1122)
Q Consensus 637 ~~~~~~~ipeef~CPIc~e 655 (1122)
.|+-+.++|+++.||+|+.
T Consensus 26 pGt~f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 26 AGTRWEDIPADWVCPDCGV 44 (55)
T ss_dssp TTCCGGGSCTTCCCTTTCC
T ss_pred CCCChhHCCCCCcCCCCCC
Confidence 4556888999999999964
No 177
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=28.32 E-value=6.6e+02 Score=28.26 Aligned_cols=136 Identities=14% Similarity=0.005 Sum_probs=90.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhhcchhhHHHHHhccchHHHHHHhhcCChhHHHHHHHHHHHHHcccCccchHHHH
Q 041480 772 QFLICRFESGKLEEKARVAALMCCCIEADAGCRNQMARNINVYSLLELLHSKQVKPRTNTVLLLIDLICLSRRRDVSTLL 851 (1122)
Q Consensus 772 p~LV~LL~sgs~Eek~~AaalL~~La~~D~snR~~Iae~GaI~pLV~LL~SGs~~aRenAv~aL~eLs~~~~~k~~~~~L 851 (1122)
...++++.+.+.+.|.=+--.+..++... ...| .++..|..=+.+.+.-.|..|+++|..+. .++ + +
T Consensus 71 ~~v~kl~~s~d~~lKrLvYLyl~~~~~~~---~e~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~-~~~---m---~ 137 (355)
T 3tjz_B 71 FAMTKLFQSNDPTLRRMCYLTIKEMSCIA---EDVI---IVTSSLTKDMTGKEDSYRGPAVRALCQIT-DST---M---L 137 (355)
T ss_dssp HHHHGGGGCCCHHHHHHHHHHHHHHTTTS---SCGG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHC-CTT---T---H
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCH---HHHH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCC-CHH---H---H
Confidence 34577888888887764433344444321 1122 35678888888889999999999998873 111 1 1
Q ss_pred HhhhhhhhhhhHHHHHHHhhcCCcchHHHHHHHHHhhccCCChhhhhhhhhccHHHHHHHHhccCCChHHHHHHHHHHHH
Q 041480 852 RNVQNEELVNAMHVLLLYLQRSPPEQRPLFSILLLHLDLLVEPRKYSIYREAAVDAITVALEESLTDEKIQEKCCRALLI 931 (1122)
Q Consensus 852 ~~I~~eG~~gaI~~Ll~lLqsgs~~~k~lAA~aLlnLsll~EpnK~sIvReGAV~aLV~LL~~g~~~~~~qe~Aa~AL~~ 931 (1122)
. .....+...+.+..|--+..|+.+.++|..... .++ ++.++.+-++|....+ .++-.|..+|..
T Consensus 138 ~--------~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p----e~v-~~~~~~l~~ll~d~n~--~V~~~Al~lL~e 202 (355)
T 3tjz_B 138 Q--------AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF----DVV-KRWVNEAQEAASSDNI--MVQYHALGLLYH 202 (355)
T ss_dssp H--------HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH----HHH-HTTHHHHHHHTTCSSH--HHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH----HHH-HHHHHHHHHHhcCCCc--cHHHHHHHHHHH
Confidence 1 233556666777788888888888888865422 133 3578888888876553 588888888888
Q ss_pred hhcC
Q 041480 932 LGGR 935 (1122)
Q Consensus 932 Lag~ 935 (1122)
+..+
T Consensus 203 i~~~ 206 (355)
T 3tjz_B 203 VRKN 206 (355)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 8753
No 178
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=27.80 E-value=10 Score=29.18 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=11.4
Q ss_pred CcccccccchhccCCc
Q 041480 646 QDFICPLTGQLFEEPV 661 (1122)
Q Consensus 646 eef~CPIc~elm~DPV 661 (1122)
+-|+||||..-|..|-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3588888887776653
No 179
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=26.22 E-value=21 Score=31.57 Aligned_cols=19 Identities=21% Similarity=0.648 Sum_probs=15.5
Q ss_pred cCCccCCCCCcccccccch
Q 041480 637 KGSFLTSIPQDFICPLTGQ 655 (1122)
Q Consensus 637 ~~~~~~~ipeef~CPIc~e 655 (1122)
.|+-+.++|+++.||+|+.
T Consensus 30 pGT~f~~lPddw~CP~Cga 48 (70)
T 1dx8_A 30 PGTPFVDLSDSFMCPACRS 48 (70)
T ss_dssp SSCCGGGSCTTCBCTTTCC
T ss_pred CCCchhhCCCCCcCCCCCC
Confidence 4555788999999999954
No 180
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=25.59 E-value=19 Score=29.31 Aligned_cols=16 Identities=31% Similarity=0.883 Sum_probs=13.4
Q ss_pred ccCCCCCcccccccch
Q 041480 640 FLTSIPQDFICPLTGQ 655 (1122)
Q Consensus 640 ~~~~ipeef~CPIc~e 655 (1122)
-+.++|+++.||+|+.
T Consensus 23 ~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 23 PFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CGGGSCTTCBCTTTCC
T ss_pred chhhCCCCCcCcCCCC
Confidence 3668999999999974
No 181
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=25.02 E-value=24 Score=32.49 Aligned_cols=19 Identities=37% Similarity=0.831 Sum_probs=15.6
Q ss_pred cCCccCCCCCcccccccch
Q 041480 637 KGSFLTSIPQDFICPLTGQ 655 (1122)
Q Consensus 637 ~~~~~~~ipeef~CPIc~e 655 (1122)
.|.-+.++|+++.||+|+.
T Consensus 58 pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 58 PGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp SCCCGGGCCTTCCCSSSCC
T ss_pred CCCChhHCCCCCCCCCCCC
Confidence 3556789999999999964
No 182
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=22.19 E-value=1.7e+02 Score=31.93 Aligned_cols=82 Identities=11% Similarity=0.070 Sum_probs=53.5
Q ss_pred hHHHHHHhhccCCchhHHHHHHHHHHHHhhhccCCCchhhHhhHHHhH---HHHHHhhcCCCChhhHHHHHHHhhhhhCC
Q 041480 1004 FLETVSKILGSRNSDLVSVCLTTVAWLSHALSAQPDAEFQLSAFSAVI---SQLKEILQNGEQPQQKVLASMSLLNFSKI 1080 (1122)
Q Consensus 1004 ~L~aL~~~l~s~~~~l~~acL~t~aWl~~~L~~~~~t~~~~~A~~~ll---~~Lv~~L~~~~~~eer~LA~~aL~~~~~~ 1080 (1122)
++..|.++++++|.+....||. |+.+++..-.-+ . ...+ |.+..+|. +.+..-|-.|.-|+-..-
T Consensus 168 v~~~l~~g~ksKN~R~R~e~l~---~l~~li~~~G~~---~---~~~l~~~~~ia~ll~-D~d~~VR~aAl~~lve~y-- 235 (266)
T 2of3_A 168 MTPMLLDALKSKNARQRSECLL---VIEYYITNAGIS---P---LKSLSVEKTVAPFVG-DKDVNVRNAAINVLVACF-- 235 (266)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHH---HHHHHHHHHCSG---G---GGGGCHHHHHGGGGG-CSSHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHccCCHHHHHHHHH---HHHHHHHhcCCC---c---cccccchHHHHHHHc-CCCHHHHHHHHHHHHHHH--
Confidence 4677888999999999999986 555666554332 1 2345 88889998 566777777766554322
Q ss_pred cchhhhHHHHhhHhHHHhhhhccc
Q 041480 1081 PECGAVLKTIAAEIRIPLQSLTEV 1104 (1122)
Q Consensus 1081 ~~~~~~L~~~a~gi~~~Lr~L~~~ 1104 (1122)
...-+.+++.|.+|.+-
T Consensus 236 -------~~~Gd~v~k~lg~L~~~ 252 (266)
T 2of3_A 236 -------KFEGDQMWKAAGRMADK 252 (266)
T ss_dssp -------HHHTTHHHHHHCCCCHH
T ss_pred -------HHhhHHHHHHHhcCCHH
Confidence 22334466666666543
No 183
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.76 E-value=1.6e+02 Score=30.73 Aligned_cols=71 Identities=8% Similarity=0.067 Sum_probs=52.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhhcchh-hHHHHHhccchHHHHHHhhc-CChhHHHHHHHHHHHHH
Q 041480 769 GGLQFLICRFESGKLEEKARVAALMCCCIEADAG-CRNQMARNINVYSLLELLHS-KQVKPRTNTVLLLIDLI 839 (1122)
Q Consensus 769 GaIp~LV~LL~sgs~Eek~~AaalL~~La~~D~s-nR~~Iae~GaI~pLV~LL~S-Gs~~aRenAv~aL~eLs 839 (1122)
.++..|.+.|.++++.++..|+.+|-.|++..+. -...|+....+.-|+.++.. .+...|..++.+|....
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4566788888889999999999999888875433 45567777777888887764 34677887777777654
Done!