BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041485
         (179 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
          Length = 175

 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 11/161 (6%)

Query: 14  MASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDT---LYIIHIKLPQGDESRNLLWSDT 70
           +A N  +I    + S   K A +W ++ ++    +   + ++H+++   D      + D 
Sbjct: 10  VAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDG-----FDDV 64

Query: 71  GSPLIPLEEFRDQEVMKQYEXXXXXXXXXXXXAASKQKHVSVVAKLYWGDARDKLCEAVE 130
            S     E+FRD    +Q                  +  V   A +  GD +D +C+ V+
Sbjct: 65  DSIYASPEDFRD---XRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVK 121

Query: 131 AMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171
            ++ D LV+GSRGLG  Q+V +G+VS   + +A CPV  +K
Sbjct: 122 RVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVXTIK 162


>pdb|1WJG|A Chain A, Crystal Structure Of A Probable Atp Binding Protein From
           Thermus Themophilus Hb8
 pdb|2Z08|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
           From Thermus Thermophilus Hb8
 pdb|2Z09|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
           From Thermus Thermophilus Hb8
 pdb|2Z3V|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
           From Thermus Thermophilus Hb8
          Length = 137

 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%)

Query: 114 AKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171
           A L  G   + + +A  A K D +VMG+RGLG +  + LGS S  V+A A CPV +V+
Sbjct: 80  ALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137


>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
           Hypothetical Protein Mj0577: A Test Case Of Structural
           Genomics
 pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
           Hypothetical Protein Mj0577: A Test Case Of Structural
           Genomics
          Length = 162

 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 34/56 (60%)

Query: 116 LYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171
           +  G   +++ +  E   +D ++MGS G   ++ +LLGSV+ +V+  ++ PV +VK
Sbjct: 103 IVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVK 158


>pdb|2PFS|A Chain A, Crystal Structure Of Universal Stress Protein From
           Nitrosomonas Europaea
          Length = 150

 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 116 LYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171
           L WG+ R+++    E   +D +V+GS G   +  +LLGS +N VL  A C V  V+
Sbjct: 92  LVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146


>pdb|3TNJ|A Chain A, Crystal Structure Of Universal Stress Protein From
           Nitrosomonas Europaea With Amp Bound
          Length = 150

 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 116 LYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171
           L WG+ R+++    E   +D +V+GS G   +  +LLGS +N VL  A C V  V+
Sbjct: 92  LVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146


>pdb|3LOQ|A Chain A, The Crystal Structure Of A Universal Stress Protein From
           Archaeoglobus Fulgidus Dsm 4304
 pdb|3LOQ|B Chain B, The Crystal Structure Of A Universal Stress Protein From
           Archaeoglobus Fulgidus Dsm 4304
          Length = 294

 Score = 37.0 bits (84), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 34/149 (22%)

Query: 23  VALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRD 82
           VA DFSK +  AL++A   + + G  L+IIH+    GD++ +L                 
Sbjct: 175 VAYDFSKWADRALEYAKFVVKKTGGELHIIHVS-EDGDKTADLRVX-------------- 219

Query: 83  QEVMKQYEXXXXXXXXXXXXAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSR 142
           +EV+                A   + HV + +    G     +    E +   ++  GSR
Sbjct: 220 EEVI---------------GAEGIEVHVHIES----GTPHKAILAKREEINATTIFXGSR 260

Query: 143 GLGTIQRVLLGSVSNHVLANASCPVTIVK 171
           G G++   +LGS S  V+  +  PV + K
Sbjct: 261 GAGSVXTXILGSTSESVIRRSPVPVFVCK 289



 Score = 36.6 bits (83), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 121 ARDKLCEAVEAMKLDSLV-MGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171
           A D + E ++A +  S +  GSRG    +++LLGSVS  VL ++  PV I K
Sbjct: 110 AGDPVVEIIKASENYSFIAXGSRGASKFKKILLGSVSEGVLHDSKVPVYIFK 161


>pdb|3S3T|A Chain A, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|B Chain B, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|C Chain C, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|D Chain D, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|E Chain E, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|F Chain F, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|G Chain G, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|H Chain H, Universal Stress Protein Uspa From Lactobacillus Plantarum
          Length = 146

 Score = 33.5 bits (75), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 27/39 (69%)

Query: 133 KLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171
           ++D +V+G+ G  +  RV +GS +++V+ +A C V +++
Sbjct: 108 EIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146


>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
 pdb|3HGM|B Chain B, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
 pdb|3HGM|C Chain C, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
 pdb|3HGM|D Chain D, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
          Length = 147

 Score = 33.1 bits (74), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 135 DSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIV 170
           D +V+G++G    + +LLGSV+  V  +A CPV +V
Sbjct: 112 DLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147


>pdb|3CIS|A Chain A, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|B Chain B, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|C Chain C, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|D Chain D, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|E Chain E, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|F Chain F, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|G Chain G, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|H Chain H, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
          Length = 309

 Score = 33.1 bits (74), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 137 LVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172
           +V+G  G G     LLGSVS+ +L +A CPV I+ D
Sbjct: 126 MVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHD 161



 Score = 27.7 bits (60), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 137 LVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172
           +V+GSRG G    +L+GSV   V   A  PV + ++
Sbjct: 271 VVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARE 306


>pdb|2JAX|A Chain A, Universal Stress Protein Rv2623 From Mycobaterium
           Tuberculosis
          Length = 305

 Score = 32.0 bits (71), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 138 VMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172
           V+G  G G     LLGSVS+ +L +A CPV I+ D
Sbjct: 115 VVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHD 149



 Score = 27.3 bits (59), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 137 LVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172
           +V+GSRG G     L+GSV   V   A  PV + ++
Sbjct: 259 VVVGSRGRGGYAGXLVGSVGETVAQLARTPVIVARE 294


>pdb|3DLO|A Chain A, Structure Of Universal Stress Protein From Archaeoglobus
           Fulgidus
 pdb|3DLO|B Chain B, Structure Of Universal Stress Protein From Archaeoglobus
           Fulgidus
 pdb|3DLO|C Chain C, Structure Of Universal Stress Protein From Archaeoglobus
           Fulgidus
 pdb|3DLO|D Chain D, Structure Of Universal Stress Protein From Archaeoglobus
           Fulgidus
          Length = 155

 Score = 30.4 bits (67), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 24/152 (15%)

Query: 21  IGVALDF-SKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEE 79
           I VA+D  S  ++  L++A +    +G  +Y++H  LP G  ++                
Sbjct: 27  IVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVH-SLPGGGRTK---------------- 69

Query: 80  FRDQEVMKQYEXXXXXXXXXXXXAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVM 139
             D+++++  E             A  ++H+ V  K    D  D   + V+A+   ++V+
Sbjct: 70  --DEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVD-FADEVDAI---AIVI 123

Query: 140 GSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171
           G R      +++ GSV+  V+  A+ PV  +K
Sbjct: 124 GIRKRSPTGKLIFGSVARDVILKANKPVICIK 155


>pdb|1TQ8|A Chain A, Crystal Structure Of Protein Rv1636 From Mycobacterium
           Tuberculosis H37rv
 pdb|1TQ8|B Chain B, Crystal Structure Of Protein Rv1636 From Mycobacterium
           Tuberculosis H37rv
 pdb|1TQ8|C Chain C, Crystal Structure Of Protein Rv1636 From Mycobacterium
           Tuberculosis H37rv
 pdb|1TQ8|D Chain D, Crystal Structure Of Protein Rv1636 From Mycobacterium
           Tuberculosis H37rv
 pdb|1TQ8|E Chain E, Crystal Structure Of Protein Rv1636 From Mycobacterium
           Tuberculosis H37rv
 pdb|1TQ8|F Chain F, Crystal Structure Of Protein Rv1636 From Mycobacterium
           Tuberculosis H37rv
          Length = 163

 Score = 30.4 bits (67), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 25/48 (52%)

Query: 123 DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIV 170
           D L    +  K D LV+G+ GL TI   LLGSV  +V   A   V IV
Sbjct: 109 DALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV 156


>pdb|3QTB|A Chain A, Structure Of The Universal Stress Protein From
           Archaeoglobus Fulgidus In Complex With Damp
 pdb|3QTB|B Chain B, Structure Of The Universal Stress Protein From
           Archaeoglobus Fulgidus In Complex With Damp
          Length = 155

 Score = 30.4 bits (67), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 24/152 (15%)

Query: 21  IGVALDF-SKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEE 79
           I VA+D  S  ++  L++A +    +G  +Y++H  LP G  ++                
Sbjct: 27  IVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVH-SLPGGGRTK---------------- 69

Query: 80  FRDQEVMKQYEXXXXXXXXXXXXAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVM 139
             D+++++  E             A  ++H+ V  K    D  D   + V+A+   ++V+
Sbjct: 70  --DEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVD-FADEVDAI---AIVI 123

Query: 140 GSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171
           G R      +++ GSV+  V+  A+ PV  +K
Sbjct: 124 GIRKRSPTGKLIFGSVARDVILKANKPVICIK 155


>pdb|2DUM|A Chain A, Crystal Structure Of Hypothetical Protein, Ph0823
 pdb|2DUM|B Chain B, Crystal Structure Of Hypothetical Protein, Ph0823
 pdb|2DUM|C Chain C, Crystal Structure Of Hypothetical Protein, Ph0823
 pdb|2DUM|D Chain D, Crystal Structure Of Hypothetical Protein, Ph0823
          Length = 170

 Score = 30.0 bits (66), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 19/170 (11%)

Query: 8   LIFFFKMASNNRSIGVALDFSKGSKLALK-WAIDNLLEKGDTLYIIHI----KLPQGDES 62
           +IF F      R +    DFS+G+  A++ +   N +E G+ + ++H+     L +  + 
Sbjct: 1   MIFMF------RKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVI-LLHVIDEGTLEELMDG 53

Query: 63  RNLLWSDTGSPLIPLEEFRDQEVMKQYEXXXXXXXXXXXXAASKQKHVSVVAKLYWGDAR 122
            +  + +    L  ++E   +E  ++ +             A + K+V  + +  +G   
Sbjct: 54  YSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEVKR-----AFRAKNVRTIIR--FGIPW 106

Query: 123 DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172
           D++ +  E   +  +++ SRG  ++    LGS    VL     PV I+K+
Sbjct: 107 DEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKE 156


>pdb|2BM8|A Chain A, Cmci-N160 Apo-Structure
 pdb|2BM8|B Chain B, Cmci-N160 Apo-Structure
 pdb|2BM8|C Chain C, Cmci-N160 Apo-Structure
 pdb|2BM8|D Chain D, Cmci-N160 Apo-Structure
 pdb|2BM8|E Chain E, Cmci-N160 Apo-Structure
 pdb|2BM8|F Chain F, Cmci-N160 Apo-Structure
 pdb|2BM8|G Chain G, Cmci-N160 Apo-Structure
 pdb|2BM8|H Chain H, Cmci-N160 Apo-Structure
 pdb|2BM8|I Chain I, Cmci-N160 Apo-Structure
 pdb|2BM8|J Chain J, Cmci-N160 Apo-Structure
 pdb|2BM8|K Chain K, Cmci-N160 Apo-Structure
 pdb|2BM8|L Chain L, Cmci-N160 Apo-Structure
 pdb|2BM9|A Chain A, Cmci-N160 In Complex With Sam
 pdb|2BM9|B Chain B, Cmci-N160 In Complex With Sam
 pdb|2BM9|C Chain C, Cmci-N160 In Complex With Sam
 pdb|2BM9|D Chain D, Cmci-N160 In Complex With Sam
 pdb|2BM9|E Chain E, Cmci-N160 In Complex With Sam
 pdb|2BM9|F Chain F, Cmci-N160 In Complex With Sam
 pdb|2BR5|A Chain A, Cmci-N160 Sah
 pdb|2BR5|B Chain B, Cmci-N160 Sah
 pdb|2BR5|C Chain C, Cmci-N160 Sah
 pdb|2BR5|D Chain D, Cmci-N160 Sah
 pdb|2BR5|E Chain E, Cmci-N160 Sah
 pdb|2BR5|F Chain F, Cmci-N160 Sah
          Length = 236

 Score = 27.7 bits (60), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)

Query: 35  LKWAIDNLLEKGDTLYIIHIKLP 57
           +KWA+D+LLE+GD  +II   +P
Sbjct: 169 MKWAVDHLLEEGD-YFIIEDMIP 190


>pdb|2BR3|A Chain A, Cmci-D160 Mg
 pdb|2BR3|B Chain B, Cmci-D160 Mg
 pdb|2BR3|C Chain C, Cmci-D160 Mg
 pdb|2BR3|D Chain D, Cmci-D160 Mg
 pdb|2BR3|E Chain E, Cmci-D160 Mg
 pdb|2BR3|F Chain F, Cmci-D160 Mg
 pdb|2BR4|A Chain A, Cmci-D160 Mg-Sam
 pdb|2BR4|B Chain B, Cmci-D160 Mg-Sam
 pdb|2BR4|C Chain C, Cmci-D160 Mg-Sam
 pdb|2BR4|D Chain D, Cmci-D160 Mg-Sam
 pdb|2BR4|E Chain E, Cmci-D160 Mg-Sam
 pdb|2BR4|F Chain F, Cmci-D160 Mg-Sam
          Length = 236

 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)

Query: 35  LKWAIDNLLEKGDTLYIIHIKLP 57
           +KWA+D+LLE+GD  +II   +P
Sbjct: 169 MKWAVDHLLEEGD-YFIIEDMIP 190


>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides
           Thetaiotaomicron Vpi-5482
 pdb|3BGA|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacteroides
           Thetaiotaomicron Vpi-5482
          Length = 1010

 Score = 26.9 bits (58), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 10/60 (16%)

Query: 1   DWK------TLNKLIFFFKMASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHI 54
           DWK          +I F+ +  N + +G    +++GSK A +W I ++L +G+ +  + +
Sbjct: 139 DWKGRRVVLCCEGVISFYYVWVNGKLLG----YNQGSKTAAEWDITDVLSEGENVVALEV 194


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,744,852
Number of Sequences: 62578
Number of extensions: 167986
Number of successful extensions: 615
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 27
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)