Query 041485
Match_columns 179
No_of_seqs 101 out of 1773
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 12:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 100.0 7E-28 2.4E-32 164.1 15.3 140 18-171 5-146 (146)
2 1mjh_A Protein (ATP-binding do 100.0 4.7E-27 1.6E-31 162.8 16.8 156 18-174 5-161 (162)
3 3idf_A USP-like protein; unive 99.9 1.4E-26 4.7E-31 156.3 15.5 136 18-171 1-138 (138)
4 2dum_A Hypothetical protein PH 99.9 6.5E-27 2.2E-31 163.4 13.1 148 17-175 4-159 (170)
5 1tq8_A Hypothetical protein RV 99.9 1.9E-26 6.6E-31 160.2 13.4 142 18-175 17-161 (163)
6 3tnj_A Universal stress protei 99.9 2.2E-26 7.4E-31 157.4 13.0 147 13-174 2-149 (150)
7 3fg9_A Protein of universal st 99.9 4.4E-26 1.5E-30 157.0 14.5 137 18-171 15-156 (156)
8 3hgm_A Universal stress protei 99.9 6.2E-27 2.1E-31 159.5 8.6 143 18-170 2-147 (147)
9 3dlo_A Universal stress protei 99.9 3.6E-26 1.2E-30 157.6 11.2 134 11-171 19-155 (155)
10 2z08_A Universal stress protei 99.9 6.9E-26 2.4E-30 152.8 11.5 135 18-171 2-137 (137)
11 2gm3_A Unknown protein; AT3G01 99.9 2.2E-25 7.5E-30 156.3 14.4 150 18-175 5-166 (175)
12 3fdx_A Putative filament prote 99.9 3.6E-25 1.2E-29 150.1 13.0 138 18-171 1-143 (143)
13 3olq_A Universal stress protei 99.9 8.4E-24 2.9E-28 161.1 15.0 148 14-174 4-152 (319)
14 1jmv_A USPA, universal stress 99.9 4.4E-24 1.5E-28 144.5 10.9 138 18-174 2-140 (141)
15 3loq_A Universal stress protei 99.9 2.2E-23 7.4E-28 157.3 10.3 141 18-174 22-164 (294)
16 3mt0_A Uncharacterized protein 99.9 2.1E-22 7.1E-27 151.7 13.0 123 17-173 6-129 (290)
17 3ab8_A Putative uncharacterize 99.9 1.4E-22 4.9E-27 150.8 11.5 149 19-174 1-151 (268)
18 3mt0_A Uncharacterized protein 99.9 2.3E-22 8E-27 151.4 12.4 138 17-174 133-278 (290)
19 1q77_A Hypothetical protein AQ 99.9 4.2E-22 1.4E-26 134.3 12.4 131 18-171 4-138 (138)
20 3cis_A Uncharacterized protein 99.9 2.8E-22 9.6E-27 152.3 12.6 140 18-174 19-163 (309)
21 3olq_A Universal stress protei 99.9 1E-21 3.6E-26 149.5 13.5 147 17-178 155-311 (319)
22 3loq_A Universal stress protei 99.9 1.5E-21 5.1E-26 147.3 13.8 125 17-175 169-293 (294)
23 3cis_A Uncharacterized protein 99.9 8.8E-21 3E-25 144.0 13.9 136 17-173 170-307 (309)
24 3ab8_A Putative uncharacterize 99.8 1.2E-19 4.2E-24 134.9 11.0 116 17-171 153-268 (268)
25 2iel_A Hypothetical protein TT 97.2 0.017 5.8E-07 37.7 11.9 130 18-171 1-134 (138)
26 3a2k_A TRNA(Ile)-lysidine synt 97.1 0.0061 2.1E-07 48.5 10.8 109 4-143 4-129 (464)
27 1wy5_A TILS, hypothetical UPF0 97.1 0.0092 3.2E-07 45.0 11.2 106 5-142 11-134 (317)
28 4b4k_A N5-carboxyaminoimidazol 95.2 0.22 7.6E-06 34.1 8.9 72 96-175 36-111 (181)
29 4grd_A N5-CAIR mutase, phospho 94.1 0.32 1.1E-05 33.1 7.6 71 96-174 26-100 (173)
30 3trh_A Phosphoribosylaminoimid 94.0 0.26 9.1E-06 33.4 7.1 71 96-174 20-94 (169)
31 1zun_A Sulfate adenylyltransfe 93.9 0.65 2.2E-05 35.1 10.0 92 18-143 46-156 (325)
32 3oow_A Phosphoribosylaminoimid 93.9 0.52 1.8E-05 31.9 8.2 71 96-174 19-93 (166)
33 2ywx_A Phosphoribosylaminoimid 93.8 0.38 1.3E-05 32.2 7.5 69 96-172 13-82 (157)
34 3kuu_A Phosphoribosylaminoimid 93.7 0.47 1.6E-05 32.3 7.9 71 96-174 26-100 (174)
35 2xry_A Deoxyribodipyrimidine p 93.6 0.56 1.9E-05 37.4 9.6 112 30-172 50-161 (482)
36 3rg8_A Phosphoribosylaminoimid 93.4 0.53 1.8E-05 31.6 7.7 71 96-174 16-91 (159)
37 1xmp_A PURE, phosphoribosylami 93.3 0.52 1.8E-05 32.0 7.5 71 96-174 25-99 (170)
38 3lp6_A Phosphoribosylaminoimid 93.3 0.22 7.6E-06 33.9 5.7 71 96-174 21-95 (174)
39 3ors_A N5-carboxyaminoimidazol 93.0 0.21 7.2E-06 33.7 5.3 71 96-174 17-91 (163)
40 1ni5_A Putative cell cycle pro 92.8 0.73 2.5E-05 36.2 8.9 41 18-58 13-54 (433)
41 1efv_B Electron transfer flavo 92.8 0.33 1.1E-05 35.4 6.5 96 29-168 40-147 (255)
42 1o4v_A Phosphoribosylaminoimid 92.7 0.27 9.3E-06 33.8 5.6 71 96-174 27-101 (183)
43 1efp_B ETF, protein (electron 92.6 0.36 1.2E-05 35.1 6.5 30 27-57 35-66 (252)
44 1u11_A PURE (N5-carboxyaminoim 92.4 0.64 2.2E-05 31.9 7.1 71 96-174 35-109 (182)
45 1o97_C Electron transferring f 92.3 0.28 9.4E-06 36.0 5.6 83 24-145 32-124 (264)
46 3ih5_A Electron transfer flavo 92.3 0.74 2.5E-05 32.6 7.7 40 18-57 3-47 (217)
47 3kcq_A Phosphoribosylglycinami 91.6 1.5 5.3E-05 31.0 8.6 89 13-143 4-92 (215)
48 3tqr_A Phosphoribosylglycinami 91.1 3 0.0001 29.5 10.0 88 14-143 1-93 (215)
49 3umv_A Deoxyribodipyrimidine p 90.9 2 6.8E-05 34.5 9.6 116 29-172 50-168 (506)
50 3p9x_A Phosphoribosylglycinami 90.7 3.3 0.00011 29.2 10.0 85 18-143 2-91 (211)
51 3g40_A Na-K-CL cotransporter; 89.3 0.85 2.9E-05 33.8 5.7 103 32-176 179-281 (294)
52 3tqi_A GMP synthase [glutamine 88.4 2.5 8.6E-05 34.1 8.5 51 5-58 217-267 (527)
53 2wq7_A RE11660P; lyase-DNA com 87.9 2.4 8.1E-05 34.4 8.0 130 19-173 29-162 (543)
54 1sur_A PAPS reductase; assimil 87.5 5.6 0.00019 27.7 11.8 36 19-58 45-80 (215)
55 2oq2_A Phosphoadenosine phosph 87.3 5.2 0.00018 29.0 9.0 40 18-58 41-80 (261)
56 1k92_A Argininosuccinate synth 87.1 5.5 0.00019 31.5 9.4 37 18-58 10-46 (455)
57 2der_A TRNA-specific 2-thiouri 86.5 6.3 0.00022 30.4 9.4 41 13-57 12-52 (380)
58 2wsi_A FAD synthetase; transfe 85.7 6.7 0.00023 29.2 9.0 91 19-143 54-167 (306)
59 2h31_A Multifunctional protein 85.6 1.6 5.6E-05 34.1 5.7 70 96-173 279-353 (425)
60 3o1l_A Formyltetrahydrofolate 85.5 9.5 0.00032 28.4 10.3 84 17-143 104-191 (302)
61 4ds3_A Phosphoribosylglycinami 85.5 7.6 0.00026 27.3 8.7 88 13-143 4-96 (209)
62 3lou_A Formyltetrahydrofolate 84.9 10 0.00034 28.1 10.0 84 17-143 94-181 (292)
63 2ywb_A GMP synthase [glutamine 84.4 14 0.00048 29.5 11.2 36 18-57 209-244 (503)
64 2hma_A Probable tRNA (5-methyl 84.2 8.8 0.0003 29.5 9.2 36 18-57 9-44 (376)
65 3n0v_A Formyltetrahydrofolate 83.7 11 0.00038 27.8 10.0 84 17-143 89-176 (286)
66 3da8_A Probable 5'-phosphoribo 83.2 9.9 0.00034 26.8 8.9 83 18-143 12-99 (215)
67 2nz2_A Argininosuccinate synth 83.0 6.3 0.00022 30.8 8.0 37 18-58 5-41 (413)
68 3bl5_A Queuosine biosynthesis 81.8 10 0.00036 26.1 11.3 37 18-58 3-39 (219)
69 3tvs_A Cryptochrome-1; circadi 81.4 2 7E-05 34.7 4.9 120 26-171 13-135 (538)
70 1np7_A DNA photolyase; protein 80.3 10 0.00034 30.2 8.5 131 19-173 6-138 (489)
71 1iv0_A Hypothetical protein; r 80.2 5.6 0.00019 24.3 5.6 54 120-175 38-96 (98)
72 3nbm_A PTS system, lactose-spe 80.1 1.6 5.5E-05 27.3 3.1 63 98-172 23-86 (108)
73 3zqu_A Probable aromatic acid 80.0 4 0.00014 28.7 5.5 39 14-54 1-39 (209)
74 2j07_A Deoxyribodipyrimidine p 79.1 7.5 0.00026 30.3 7.3 109 29-173 14-122 (420)
75 2c5s_A THII, probable thiamine 77.5 23 0.00079 27.5 10.1 35 18-56 187-221 (413)
76 1meo_A Phosophoribosylglycinam 77.2 16 0.00055 25.5 10.6 84 19-143 1-89 (209)
77 2ywr_A Phosphoribosylglycinami 76.1 17 0.0006 25.4 9.4 42 102-143 44-90 (216)
78 2pg3_A Queuosine biosynthesis 75.4 18 0.00062 25.3 10.6 36 18-57 2-37 (232)
79 1owl_A Photolyase, deoxyribodi 75.0 5.1 0.00017 31.9 5.4 118 26-172 12-129 (484)
80 2o8v_A Phosphoadenosine phosph 74.8 20 0.0007 25.6 9.6 35 19-57 46-80 (252)
81 2ejb_A Probable aromatic acid 74.8 6.4 0.00022 27.1 5.2 35 18-53 1-35 (189)
82 3k32_A Uncharacterized protein 74.3 14 0.00048 25.4 7.0 37 18-58 6-42 (203)
83 3obi_A Formyltetrahydrofolate 74.1 7.7 0.00026 28.7 5.8 85 17-143 88-176 (288)
84 1dnp_A DNA photolyase; DNA rep 74.0 7.2 0.00025 30.9 6.0 88 31-142 15-104 (471)
85 1kor_A Argininosuccinate synth 73.8 23 0.00078 27.4 8.7 36 19-57 1-36 (400)
86 3en0_A Cyanophycinase; serine 73.8 6.9 0.00024 29.0 5.5 106 18-160 25-137 (291)
87 2dpl_A GMP synthetase, GMP syn 73.5 25 0.00086 26.0 10.0 38 18-58 20-57 (308)
88 3m9w_A D-xylose-binding peripl 73.4 23 0.00079 25.6 9.9 75 95-175 18-94 (313)
89 1ccw_A Protein (glutamate muta 73.2 16 0.00054 23.5 6.7 69 100-171 22-92 (137)
90 2l69_A Rossmann 2X3 fold prote 73.1 13 0.00044 22.5 8.6 37 95-131 87-123 (134)
91 2j4d_A Cryptochrome 3, cryptoc 73.1 30 0.001 27.8 9.5 131 19-172 40-174 (525)
92 3nrb_A Formyltetrahydrofolate 72.9 13 0.00046 27.4 6.8 37 17-54 87-123 (287)
93 3hly_A Flavodoxin-like domain; 71.8 15 0.00051 24.2 6.4 48 95-144 15-62 (161)
94 2e0i_A 432AA long hypothetical 71.1 11 0.00037 29.6 6.4 115 29-173 13-127 (440)
95 1vbk_A Hypothetical protein PH 70.9 16 0.00054 27.2 6.9 33 18-55 179-211 (307)
96 3fni_A Putative diflavin flavo 70.8 13 0.00045 24.5 6.0 48 95-144 19-67 (159)
97 1vl2_A Argininosuccinate synth 70.7 22 0.00077 27.8 7.9 36 18-57 14-49 (421)
98 3auf_A Glycinamide ribonucleot 70.1 26 0.0009 24.8 10.7 42 102-143 65-111 (229)
99 3fy4_A 6-4 photolyase; DNA rep 69.4 13 0.00043 30.2 6.5 99 26-142 14-112 (537)
100 2yxb_A Coenzyme B12-dependent 68.4 18 0.00062 24.0 6.2 68 101-171 38-107 (161)
101 2i2x_B MTAC, methyltransferase 68.1 30 0.001 24.9 7.8 68 101-171 143-211 (258)
102 2ppv_A Uncharacterized protein 67.9 10 0.00034 28.7 5.2 53 120-174 166-219 (332)
103 3g40_A Na-K-CL cotransporter; 67.8 35 0.0012 25.3 12.2 122 19-174 21-148 (294)
104 2p0y_A Hypothetical protein LP 66.2 8.7 0.0003 29.2 4.6 52 120-173 177-229 (341)
105 2o2z_A Hypothetical protein; s 66.1 10 0.00034 28.6 4.9 52 120-174 167-220 (323)
106 3av3_A Phosphoribosylglycinami 65.9 31 0.0011 24.0 10.1 42 102-143 46-92 (212)
107 1y80_A Predicted cobalamin bin 65.3 21 0.00072 24.6 6.3 70 100-172 107-179 (210)
108 2l2q_A PTS system, cellobiose- 64.9 15 0.00052 22.5 5.0 62 100-172 23-84 (109)
109 1g63_A Epidermin modifying enz 64.5 8.1 0.00028 26.4 3.9 37 18-55 2-38 (181)
110 2hy5_B Intracellular sulfur ox 63.2 7.6 0.00026 25.1 3.4 40 17-57 4-47 (136)
111 2q7x_A UPF0052 protein SP_1565 63.0 10 0.00035 28.6 4.5 52 120-173 173-225 (326)
112 1qzu_A Hypothetical protein MD 62.7 8.5 0.00029 26.9 3.8 45 10-54 11-55 (206)
113 3dzc_A UDP-N-acetylglucosamine 62.6 32 0.0011 26.2 7.5 48 6-54 14-61 (396)
114 3egc_A Putative ribose operon 62.5 39 0.0013 24.0 10.2 73 95-175 24-98 (291)
115 3l4e_A Uncharacterized peptida 62.5 27 0.00093 24.2 6.4 43 97-141 45-87 (206)
116 3dm5_A SRP54, signal recogniti 62.5 55 0.0019 25.7 10.8 48 100-147 146-196 (443)
117 2qv7_A Diacylglycerol kinase D 62.4 33 0.0011 25.6 7.4 72 96-173 42-115 (337)
118 2ojp_A DHDPS, dihydrodipicolin 62.1 44 0.0015 24.5 7.8 77 95-172 57-135 (292)
119 3qi7_A Putative transcriptiona 62.1 51 0.0017 25.3 8.3 94 19-142 13-120 (371)
120 1jkx_A GART;, phosphoribosylgl 62.0 37 0.0013 23.7 10.9 84 19-143 1-89 (212)
121 3m5v_A DHDPS, dihydrodipicolin 61.5 46 0.0016 24.5 8.7 78 95-172 63-142 (301)
122 2ehh_A DHDPS, dihydrodipicolin 61.5 45 0.0015 24.4 8.6 77 95-172 56-134 (294)
123 2ohh_A Type A flavoprotein FPR 60.9 51 0.0018 24.9 10.1 88 20-143 227-317 (404)
124 3jy6_A Transcriptional regulat 60.5 41 0.0014 23.7 10.5 71 95-174 23-95 (276)
125 2vc6_A MOSA, dihydrodipicolina 60.0 48 0.0016 24.3 7.8 77 95-172 56-134 (292)
126 1vhx_A Putative holliday junct 60.0 5.5 0.00019 26.3 2.3 56 119-174 41-100 (150)
127 1nu0_A Hypothetical protein YQ 59.9 8.7 0.0003 25.0 3.2 55 120-174 40-98 (138)
128 2yxg_A DHDPS, dihydrodipicolin 59.7 48 0.0017 24.2 8.1 77 95-172 56-134 (289)
129 1u3d_A Cryptochrome 1 apoprote 59.6 45 0.0015 26.6 8.0 123 20-172 13-138 (509)
130 3d0c_A Dihydrodipicolinate syn 59.0 52 0.0018 24.4 8.7 75 95-171 68-144 (314)
131 2v9d_A YAGE; dihydrodipicolini 58.8 56 0.0019 24.6 8.1 77 95-172 87-165 (343)
132 1sbz_A Probable aromatic acid 58.8 23 0.00079 24.5 5.4 36 19-54 1-36 (197)
133 3h5i_A Response regulator/sens 58.4 30 0.001 21.4 9.1 71 97-174 17-88 (140)
134 3eod_A Protein HNR; response r 58.3 28 0.00096 21.1 7.4 69 98-174 20-89 (130)
135 3hs3_A Ribose operon repressor 58.1 46 0.0016 23.5 7.5 66 95-173 26-94 (277)
136 3f6p_A Transcriptional regulat 58.0 28 0.00095 20.9 8.1 67 99-173 16-82 (120)
137 3lqk_A Dipicolinate synthase s 58.0 13 0.00044 25.9 4.0 40 14-54 3-43 (201)
138 1f6k_A N-acetylneuraminate lya 57.9 50 0.0017 24.2 7.5 77 95-172 60-138 (293)
139 2r8w_A AGR_C_1641P; APC7498, d 57.6 58 0.002 24.4 8.3 77 95-172 90-168 (332)
140 3a5f_A Dihydrodipicolinate syn 57.6 47 0.0016 24.3 7.3 77 95-172 57-135 (291)
141 3qjg_A Epidermin biosynthesis 57.2 18 0.00061 24.6 4.6 35 19-54 6-40 (175)
142 1qv9_A F420-dependent methylen 57.1 19 0.00065 25.9 4.7 48 123-174 54-101 (283)
143 1o5k_A DHDPS, dihydrodipicolin 56.0 59 0.002 24.0 8.2 77 95-172 68-146 (306)
144 2wkj_A N-acetylneuraminate lya 55.6 57 0.002 24.0 7.5 77 95-172 67-146 (303)
145 4f2d_A L-arabinose isomerase; 55.5 57 0.0019 26.1 7.8 44 122-171 60-104 (500)
146 2rfg_A Dihydrodipicolinate syn 55.1 53 0.0018 24.2 7.2 77 95-172 56-134 (297)
147 3i42_A Response regulator rece 55.0 32 0.0011 20.7 7.3 70 97-174 15-87 (127)
148 1xng_A NH(3)-dependent NAD(+) 54.8 56 0.0019 23.4 7.5 35 18-55 25-59 (268)
149 3hv2_A Response regulator/HD d 54.7 37 0.0013 21.3 7.3 71 96-174 25-96 (153)
150 3cpr_A Dihydrodipicolinate syn 53.9 64 0.0022 23.8 8.6 77 95-172 72-150 (304)
151 3r89_A Orotidine 5'-phosphate 53.8 34 0.0012 25.3 5.9 49 4-55 6-66 (290)
152 3s40_A Diacylglycerol kinase; 53.8 49 0.0017 24.3 6.9 71 96-173 26-98 (304)
153 1p3y_1 MRSD protein; flavoprot 53.0 16 0.00056 25.2 3.9 35 18-53 8-42 (194)
154 3l49_A ABC sugar (ribose) tran 53.0 57 0.002 23.0 7.3 74 95-174 21-96 (291)
155 3o1i_D Periplasmic protein TOR 52.9 59 0.002 23.1 8.2 70 95-171 21-94 (304)
156 1gpm_A GMP synthetase, XMP ami 52.8 88 0.003 25.1 10.1 37 18-57 227-263 (525)
157 3l52_A Orotidine 5'-phosphate 52.8 39 0.0013 24.9 6.1 47 5-54 12-68 (284)
158 3gv0_A Transcriptional regulat 52.6 59 0.002 23.0 9.7 72 95-174 26-99 (288)
159 2l69_A Rossmann 2X3 fold prote 52.4 21 0.00073 21.5 3.8 45 96-140 37-82 (134)
160 3l6u_A ABC-type sugar transpor 52.2 59 0.002 22.9 9.8 74 95-174 24-99 (293)
161 3gxq_A Putative regulator of t 51.8 14 0.00047 18.8 2.4 26 111-136 11-37 (54)
162 2xxa_A Signal recognition part 51.7 84 0.0029 24.5 9.7 30 27-56 110-139 (433)
163 3grc_A Sensor protein, kinase; 51.0 40 0.0014 20.6 6.4 69 97-173 18-89 (140)
164 2gkg_A Response regulator homo 50.7 37 0.0013 20.1 6.2 64 100-170 20-86 (127)
165 3rot_A ABC sugar transporter, 50.5 65 0.0022 22.9 8.2 74 95-174 19-96 (297)
166 1vp8_A Hypothetical protein AF 50.4 60 0.0021 22.5 6.4 75 95-171 29-105 (201)
167 2bon_A Lipid kinase; DAG kinas 50.0 63 0.0022 24.0 7.1 69 99-173 47-119 (332)
168 3to5_A CHEY homolog; alpha(5)b 50.0 47 0.0016 21.1 6.6 71 97-174 24-97 (134)
169 3dbi_A Sugar-binding transcrip 49.8 72 0.0025 23.2 9.0 73 95-174 79-153 (338)
170 1wpw_A 3-isopropylmalate dehyd 49.3 83 0.0028 23.8 8.7 29 29-57 144-172 (336)
171 3tak_A DHDPS, dihydrodipicolin 49.2 74 0.0025 23.2 7.9 77 95-172 57-135 (291)
172 3ezx_A MMCP 1, monomethylamine 49.0 41 0.0014 23.4 5.5 68 101-171 112-184 (215)
173 2q5c_A NTRC family transcripti 48.8 62 0.0021 22.1 6.9 60 99-173 18-79 (196)
174 3k9c_A Transcriptional regulat 48.6 70 0.0024 22.7 9.8 69 96-173 28-97 (289)
175 3iwt_A 178AA long hypothetical 48.5 53 0.0018 21.9 5.9 43 99-141 43-89 (178)
176 3mcu_A Dipicolinate synthase, 48.4 22 0.00075 24.9 4.0 36 18-54 5-41 (207)
177 3qze_A DHDPS, dihydrodipicolin 47.9 82 0.0028 23.3 8.3 77 95-172 79-157 (314)
178 3l21_A DHDPS, dihydrodipicolin 47.8 81 0.0028 23.2 8.6 76 96-172 72-149 (304)
179 1qkk_A DCTD, C4-dicarboxylate 47.6 50 0.0017 20.7 5.7 67 99-173 17-84 (155)
180 3qk7_A Transcriptional regulat 47.5 73 0.0025 22.6 10.2 72 95-174 26-98 (294)
181 3na8_A Putative dihydrodipicol 47.2 85 0.0029 23.3 9.6 77 95-172 80-158 (315)
182 3rjz_A N-type ATP pyrophosphat 47.1 73 0.0025 22.7 6.6 92 19-142 5-99 (237)
183 3o74_A Fructose transport syst 46.8 70 0.0024 22.2 10.2 74 95-175 18-93 (272)
184 3ksm_A ABC-type sugar transpor 46.7 70 0.0024 22.2 7.7 74 95-174 16-94 (276)
185 3uug_A Multiple sugar-binding 46.6 79 0.0027 22.8 8.6 74 95-174 19-94 (330)
186 3b4u_A Dihydrodipicolinate syn 46.1 84 0.0029 23.0 7.1 76 96-172 60-141 (294)
187 3p52_A NH(3)-dependent NAD(+) 45.8 79 0.0027 22.5 9.1 36 18-56 26-61 (249)
188 4dad_A Putative pilus assembly 45.7 51 0.0018 20.3 5.5 68 99-173 34-104 (146)
189 3g1w_A Sugar ABC transporter; 45.5 79 0.0027 22.4 8.2 75 95-175 20-97 (305)
190 3flu_A DHDPS, dihydrodipicolin 45.2 88 0.003 22.9 8.4 77 95-172 63-141 (297)
191 2r91_A 2-keto-3-deoxy-(6-phosp 45.1 87 0.003 22.8 7.8 53 120-172 75-130 (286)
192 3r7f_A Aspartate carbamoyltran 44.8 57 0.0019 24.3 5.9 41 119-168 78-118 (304)
193 2nuw_A 2-keto-3-deoxygluconate 44.7 74 0.0025 23.2 6.6 53 120-172 76-131 (288)
194 1w3i_A EDA, 2-keto-3-deoxy glu 44.6 78 0.0027 23.1 6.7 53 120-172 76-131 (293)
195 3si9_A DHDPS, dihydrodipicolin 44.3 95 0.0033 23.0 7.8 77 95-172 78-156 (315)
196 3kl4_A SRP54, signal recogniti 43.5 1.2E+02 0.004 23.8 9.5 46 101-146 144-192 (433)
197 3e61_A Putative transcriptiona 43.3 82 0.0028 22.0 7.9 70 95-174 24-96 (277)
198 1xky_A Dihydrodipicolinate syn 42.9 97 0.0033 22.7 11.1 77 95-172 68-146 (301)
199 3eb2_A Putative dihydrodipicol 42.6 98 0.0034 22.7 8.4 78 96-174 61-140 (300)
200 2rgy_A Transcriptional regulat 42.4 88 0.003 22.1 7.9 71 95-173 24-99 (290)
201 3ayv_A Putative uncharacterize 42.1 84 0.0029 21.8 7.0 79 32-132 75-153 (254)
202 2rjn_A Response regulator rece 42.0 62 0.0021 20.2 6.8 68 97-172 19-87 (154)
203 1e5d_A Rubredoxin\:oxygen oxid 42.0 1.1E+02 0.0037 23.0 12.0 88 20-143 220-313 (402)
204 2is8_A Molybdopterin biosynthe 41.7 73 0.0025 21.0 5.7 42 99-140 24-69 (164)
205 2qxy_A Response regulator; reg 41.4 59 0.002 19.9 7.3 69 96-173 15-84 (142)
206 2lpm_A Two-component response 41.1 58 0.002 20.3 4.9 47 122-173 42-88 (123)
207 1efv_A Electron transfer flavo 40.9 98 0.0034 23.0 6.8 33 21-57 4-41 (315)
208 3gl9_A Response regulator; bet 40.9 57 0.002 19.5 6.7 68 99-174 16-86 (122)
209 3k4h_A Putative transcriptiona 40.6 93 0.0032 21.9 8.3 72 95-174 29-102 (292)
210 1h05_A 3-dehydroquinate dehydr 40.6 76 0.0026 20.8 6.0 71 93-170 28-100 (146)
211 2qr3_A Two-component system re 40.4 61 0.0021 19.7 6.5 70 96-172 14-88 (140)
212 1uf3_A Hypothetical protein TT 40.3 40 0.0014 22.8 4.4 9 49-57 6-14 (228)
213 1n8f_A DAHP synthetase; (beta/ 40.1 1.2E+02 0.0041 23.0 10.7 129 19-173 52-189 (350)
214 2uyg_A 3-dehydroquinate dehydr 39.9 79 0.0027 20.8 6.1 70 94-170 26-98 (149)
215 1mvl_A PPC decarboxylase athal 39.8 45 0.0015 23.3 4.5 35 18-54 19-53 (209)
216 3daq_A DHDPS, dihydrodipicolin 39.6 1.1E+02 0.0037 22.3 7.2 76 96-172 59-136 (292)
217 2j48_A Two-component sensor ki 39.5 55 0.0019 18.9 7.9 68 99-174 15-85 (119)
218 1o97_D Electron transferring f 39.4 1.2E+02 0.004 22.7 8.2 35 21-56 3-43 (320)
219 3cg4_A Response regulator rece 38.9 65 0.0022 19.6 8.1 69 98-174 20-91 (142)
220 2b4a_A BH3024; flavodoxin-like 38.7 66 0.0022 19.6 5.8 67 99-173 29-98 (138)
221 1b93_A Protein (methylglyoxal 38.4 74 0.0025 21.0 5.1 61 108-168 56-117 (152)
222 3ecs_A Translation initiation 38.4 1.2E+02 0.0042 22.6 9.3 65 102-173 165-232 (315)
223 3inp_A D-ribulose-phosphate 3- 38.4 28 0.00096 25.0 3.3 44 98-142 182-225 (246)
224 1gqo_A Dehydroquinase; dehydra 37.8 80 0.0027 20.6 5.1 72 92-170 25-98 (143)
225 3e96_A Dihydrodipicolinate syn 37.7 1.2E+02 0.0042 22.4 7.1 76 95-172 68-145 (316)
226 2zki_A 199AA long hypothetical 37.6 50 0.0017 22.1 4.5 40 18-57 4-43 (199)
227 1jq5_A Glycerol dehydrogenase; 37.4 93 0.0032 23.5 6.3 70 97-174 46-120 (370)
228 1y5e_A Molybdenum cofactor bio 37.3 68 0.0023 21.3 5.0 42 99-140 34-79 (169)
229 3rfq_A Pterin-4-alpha-carbinol 37.0 97 0.0033 21.0 5.8 42 99-140 52-96 (185)
230 3cg0_A Response regulator rece 37.0 70 0.0024 19.4 8.4 69 100-174 24-92 (140)
231 3n8k_A 3-dehydroquinate dehydr 36.9 96 0.0033 20.9 6.0 72 92-170 53-126 (172)
232 1gtz_A 3-dehydroquinate dehydr 36.9 91 0.0031 20.7 5.7 72 92-170 31-105 (156)
233 3w01_A Heptaprenylglyceryl pho 36.8 57 0.002 23.3 4.7 48 124-174 27-74 (235)
234 1x92_A APC5045, phosphoheptose 36.3 52 0.0018 22.1 4.4 37 18-55 113-149 (199)
235 3gt7_A Sensor protein; structu 36.2 79 0.0027 19.8 9.2 71 96-174 18-91 (154)
236 2q8u_A Exonuclease, putative; 35.4 29 0.00098 25.8 3.1 13 46-58 16-28 (336)
237 1e2b_A Enzyme IIB-cellobiose; 35.1 64 0.0022 19.6 4.2 40 18-57 3-42 (106)
238 3bul_A Methionine synthase; tr 35.0 93 0.0032 25.4 6.2 69 101-172 118-187 (579)
239 3gbv_A Putative LACI-family tr 34.8 1.2E+02 0.004 21.4 7.1 74 95-174 25-104 (304)
240 2xw6_A MGS, methylglyoxal synt 34.8 45 0.0015 21.5 3.5 61 108-168 48-109 (134)
241 1uqr_A 3-dehydroquinate dehydr 34.6 1E+02 0.0034 20.5 5.5 71 93-170 27-99 (154)
242 2goy_A Adenosine phosphosulfat 34.6 67 0.0023 23.2 4.9 35 19-58 55-89 (275)
243 2q62_A ARSH; alpha/beta, flavo 34.2 94 0.0032 22.1 5.6 46 96-143 52-108 (247)
244 2f6u_A GGGPS, (S)-3-O-geranylg 34.2 61 0.0021 23.1 4.5 48 123-173 23-70 (234)
245 3hzh_A Chemotaxis response reg 34.2 87 0.003 19.7 7.6 71 96-173 47-120 (157)
246 3vzx_A Heptaprenylglyceryl pho 34.1 67 0.0023 22.8 4.7 48 124-174 22-69 (228)
247 1dd9_A DNA primase, DNAG; topr 34.0 81 0.0028 23.7 5.4 36 19-54 207-245 (338)
248 4edg_A DNA primase; catalytic 33.7 36 0.0012 25.6 3.4 35 19-53 196-230 (329)
249 3brs_A Periplasmic binding pro 33.6 1.2E+02 0.0042 21.2 7.0 72 96-173 24-99 (289)
250 2amj_A Modulator of drug activ 33.4 1.1E+02 0.0039 20.7 6.5 45 96-142 34-79 (204)
251 3miz_A Putative transcriptiona 33.4 1.3E+02 0.0044 21.3 6.9 68 96-172 31-100 (301)
252 1x0l_A Homoisocitrate dehydrog 33.2 1.6E+02 0.0053 22.2 8.9 30 28-57 143-173 (333)
253 3jvd_A Transcriptional regulat 33.0 1.4E+02 0.0048 21.7 6.6 65 95-173 80-145 (333)
254 2yvq_A Carbamoyl-phosphate syn 33.0 64 0.0022 20.8 4.2 62 106-169 64-130 (143)
255 3huu_A Transcription regulator 32.8 1.3E+02 0.0045 21.3 8.0 72 95-174 43-116 (305)
256 3u7q_B Nitrogenase molybdenum- 32.8 1.9E+02 0.0065 23.2 9.0 28 116-143 421-448 (523)
257 3exr_A RMPD (hexulose-6-phosph 32.6 1.2E+02 0.0043 21.0 6.3 32 18-54 5-36 (221)
258 3tb6_A Arabinose metabolism tr 32.5 1.3E+02 0.0044 21.1 10.3 77 95-174 31-109 (298)
259 3ctl_A D-allulose-6-phosphate 32.4 84 0.0029 22.2 5.0 58 98-157 95-152 (231)
260 2fn9_A Ribose ABC transporter, 32.2 1.3E+02 0.0045 21.1 9.6 72 96-173 19-92 (290)
261 3kht_A Response regulator; PSI 31.9 89 0.0031 19.1 8.2 72 96-173 16-90 (144)
262 3inp_A D-ribulose-phosphate 3- 31.8 79 0.0027 22.6 4.8 58 99-158 124-181 (246)
263 1srr_A SPO0F, sporulation resp 31.4 83 0.0028 18.6 7.3 68 98-173 16-84 (124)
264 3hcw_A Maltose operon transcri 31.4 1.4E+02 0.0047 21.1 8.3 72 95-174 28-101 (295)
265 3n53_A Response regulator rece 31.4 90 0.0031 19.0 8.0 49 122-174 35-86 (140)
266 3kbq_A Protein TA0487; structu 31.3 94 0.0032 20.9 4.9 45 96-140 23-69 (172)
267 2yvk_A Methylthioribose-1-phos 31.2 1.8E+02 0.0061 22.3 8.7 65 103-172 227-294 (374)
268 1t9k_A Probable methylthioribo 31.2 1.7E+02 0.0058 22.1 9.7 65 103-172 202-269 (347)
269 2g2c_A Putative molybdenum cof 31.2 93 0.0032 20.5 4.9 41 100-140 29-76 (167)
270 1tqx_A D-ribulose-5-phosphate 31.1 1.4E+02 0.0047 21.0 6.8 55 104-158 109-163 (227)
271 1mkz_A Molybdenum cofactor bio 31.1 1.2E+02 0.004 20.2 5.5 42 99-140 31-76 (172)
272 3bbl_A Regulatory protein of L 30.9 1.4E+02 0.0047 21.0 9.2 71 95-173 24-96 (287)
273 4e7p_A Response regulator; DNA 30.9 96 0.0033 19.2 9.2 73 96-174 31-104 (150)
274 1tjy_A Sugar transport protein 30.9 1.5E+02 0.0051 21.3 7.4 72 96-173 20-94 (316)
275 2d1p_B TUSC, hypothetical UPF0 30.8 29 0.001 21.6 2.1 39 18-57 1-43 (119)
276 3c3d_A 2-phospho-L-lactate tra 30.5 78 0.0027 23.6 4.7 48 120-172 172-221 (311)
277 2yva_A DNAA initiator-associat 30.4 74 0.0025 21.2 4.4 37 18-55 109-145 (196)
278 2au3_A DNA primase; zinc ribbo 30.0 61 0.0021 25.0 4.2 35 19-53 288-322 (407)
279 3klo_A Transcriptional regulat 29.7 92 0.0031 21.1 4.8 68 100-173 22-92 (225)
280 3jte_A Response regulator rece 29.6 98 0.0033 18.8 7.1 69 98-174 16-87 (143)
281 3kke_A LACI family transcripti 29.5 1.5E+02 0.0052 21.0 9.7 72 95-174 31-104 (303)
282 3f6c_A Positive transcription 29.2 95 0.0033 18.6 8.0 71 97-174 13-84 (134)
283 2pju_A Propionate catabolism o 29.1 1.5E+02 0.0051 20.8 8.0 66 96-173 23-91 (225)
284 3flk_A Tartrate dehydrogenase/ 29.0 1.9E+02 0.0066 22.0 8.3 29 29-57 166-195 (364)
285 1zgz_A Torcad operon transcrip 28.9 91 0.0031 18.3 8.5 66 100-173 17-82 (122)
286 3nkl_A UDP-D-quinovosamine 4-d 28.9 60 0.0021 20.2 3.5 19 123-141 55-73 (141)
287 1xhf_A DYE resistance, aerobic 28.8 92 0.0031 18.3 8.1 67 99-173 17-83 (123)
288 1jx7_A Hypothetical protein YC 28.8 97 0.0033 18.5 4.7 39 19-57 2-45 (117)
289 1vmd_A MGS, methylglyoxal synt 28.8 1E+02 0.0035 20.9 4.7 61 108-168 72-133 (178)
290 3snk_A Response regulator CHEY 28.8 99 0.0034 18.6 6.3 71 96-174 25-97 (135)
291 1xrs_B D-lysine 5,6-aminomutas 28.7 1.6E+02 0.0054 21.3 6.0 25 119-143 166-190 (262)
292 3d8u_A PURR transcriptional re 28.7 1.5E+02 0.005 20.5 7.6 69 96-172 20-90 (275)
293 3rqi_A Response regulator prot 28.5 1.2E+02 0.0042 19.6 6.3 69 98-174 20-89 (184)
294 3lwz_A 3-dehydroquinate dehydr 28.5 1.3E+02 0.0044 19.9 6.2 72 92-170 32-105 (153)
295 3t6k_A Response regulator rece 28.5 1E+02 0.0035 18.7 8.0 68 99-174 18-88 (136)
296 2gwr_A DNA-binding response re 28.5 1.4E+02 0.0048 20.3 7.8 68 99-174 19-86 (238)
297 2dri_A D-ribose-binding protei 28.4 1.5E+02 0.0051 20.6 8.0 72 96-173 18-91 (271)
298 1ydg_A Trp repressor binding p 28.4 95 0.0032 21.0 4.7 40 18-57 6-46 (211)
299 3pzy_A MOG; ssgcid, seattle st 28.3 77 0.0026 21.0 4.0 41 99-140 30-73 (164)
300 2qu7_A Putative transcriptiona 28.3 1.5E+02 0.0053 20.7 8.2 69 95-173 23-93 (288)
301 3hdv_A Response regulator; PSI 28.2 1E+02 0.0035 18.5 7.5 70 98-174 20-91 (136)
302 3q9s_A DNA-binding response re 28.2 1.5E+02 0.0052 20.5 8.0 70 97-174 49-118 (249)
303 1ii7_A MRE11 nuclease; RAD50, 28.2 95 0.0032 22.9 4.9 16 96-111 27-42 (333)
304 3lua_A Response regulator rece 28.0 1E+02 0.0036 18.6 5.4 69 98-173 17-90 (140)
305 3kto_A Response regulator rece 27.9 79 0.0027 19.2 3.9 72 96-174 17-90 (136)
306 2qzj_A Two-component response 27.9 1.1E+02 0.0036 18.6 7.8 67 99-173 18-84 (136)
307 1rtt_A Conserved hypothetical 27.8 58 0.002 21.8 3.4 42 13-56 2-46 (193)
308 3cu2_A Ribulose-5-phosphate 3- 27.8 89 0.0031 22.2 4.5 44 98-142 174-219 (237)
309 3jyf_A 2',3'-cyclic nucleotide 27.8 1.5E+02 0.0053 22.1 6.0 11 132-142 233-243 (339)
310 3vdp_A Recombination protein R 27.7 1.6E+02 0.0054 20.6 5.8 46 5-51 138-183 (212)
311 3hdg_A Uncharacterized protein 27.4 1.1E+02 0.0036 18.5 7.8 68 99-174 21-89 (137)
312 2xdq_A Light-independent proto 27.4 36 0.0012 26.6 2.6 27 119-145 113-140 (460)
313 8abp_A L-arabinose-binding pro 27.2 1.6E+02 0.0056 20.7 7.5 70 96-172 19-90 (306)
314 2c4w_A 3-dehydroquinate dehydr 27.0 1.5E+02 0.0051 20.1 7.2 71 93-170 35-110 (176)
315 2qjg_A Putative aldolase MJ040 26.9 1.7E+02 0.0058 20.7 6.8 69 97-173 133-211 (273)
316 1m3s_A Hypothetical protein YC 26.9 94 0.0032 20.5 4.4 37 18-55 79-115 (186)
317 2vk2_A YTFQ, ABC transporter p 26.9 1.7E+02 0.0058 20.7 8.5 72 96-173 19-92 (306)
318 4a17_F RPL7A, 60S ribosomal pr 26.9 1.6E+02 0.0053 21.3 5.5 48 121-172 128-175 (255)
319 3kip_A 3-dehydroquinase, type 26.9 1.5E+02 0.005 19.9 7.2 71 93-170 40-115 (167)
320 1tmy_A CHEY protein, TMY; chem 26.9 99 0.0034 18.0 7.7 68 99-173 16-84 (120)
321 5nul_A Flavodoxin; electron tr 26.9 1.2E+02 0.004 18.8 5.2 43 95-143 13-55 (138)
322 2h0a_A TTHA0807, transcription 26.7 1.6E+02 0.0055 20.3 6.1 71 95-173 15-87 (276)
323 4hqo_A Sporozoite surface prot 26.6 1.2E+02 0.0041 21.5 5.1 40 18-57 126-165 (266)
324 3av0_A DNA double-strand break 26.5 54 0.0019 24.9 3.4 12 47-58 19-30 (386)
325 2a9o_A Response regulator; ess 26.3 1E+02 0.0034 17.9 8.0 66 100-173 16-81 (120)
326 3m6m_D Sensory/regulatory prot 26.2 1.2E+02 0.004 18.6 8.5 70 97-174 26-100 (143)
327 3t8y_A CHEB, chemotaxis respon 26.2 1.3E+02 0.0044 19.1 8.7 71 97-173 37-107 (164)
328 3fkr_A L-2-keto-3-deoxyarabona 26.1 2E+02 0.0067 21.2 8.3 77 96-173 65-146 (309)
329 3b2n_A Uncharacterized protein 26.1 1.1E+02 0.0038 18.3 5.1 48 122-173 38-86 (133)
330 3dx5_A Uncharacterized protein 26.0 1E+02 0.0034 21.8 4.6 79 31-133 82-163 (286)
331 2zay_A Response regulator rece 26.0 1.2E+02 0.004 18.5 6.4 48 122-173 41-91 (147)
332 2rdm_A Response regulator rece 25.7 1.1E+02 0.0038 18.1 8.3 69 99-174 19-89 (132)
333 1i60_A IOLI protein; beta barr 25.6 1.7E+02 0.0058 20.3 10.2 79 32-134 83-166 (278)
334 2m1z_A LMO0427 protein; homolo 25.4 58 0.002 20.0 2.7 43 100-144 24-68 (106)
335 4e0q_A COP9 signalosome comple 25.3 1E+02 0.0036 19.8 4.1 49 122-170 72-120 (141)
336 2ffh_A Protein (FFH); SRP54, s 25.3 2.4E+02 0.0082 21.9 10.8 22 125-146 172-193 (425)
337 3c3k_A Alanine racemase; struc 25.3 1.8E+02 0.0061 20.4 8.6 69 96-173 25-95 (285)
338 3kjx_A Transcriptional regulat 25.2 2E+02 0.0068 20.9 9.1 68 95-170 84-153 (344)
339 1pg5_A Aspartate carbamoyltran 25.1 2.1E+02 0.007 21.1 6.1 41 118-168 80-120 (299)
340 1dbq_A Purine repressor; trans 25.0 1.8E+02 0.0061 20.3 9.3 71 96-173 24-96 (289)
341 2oqr_A Sensory transduction pr 25.0 1.6E+02 0.0055 19.8 7.8 67 99-173 18-84 (230)
342 3zxs_A Cryptochrome B, rscryb; 24.9 2.7E+02 0.0093 22.4 7.9 70 95-173 66-140 (522)
343 3ctl_A D-allulose-6-phosphate 24.9 66 0.0022 22.7 3.3 43 99-142 155-198 (231)
344 3cnb_A DNA-binding response re 24.9 1.2E+02 0.0041 18.3 8.4 68 98-173 21-93 (143)
345 3o3m_A Alpha subunit 2-hydroxy 24.8 55 0.0019 25.2 3.2 56 120-175 321-376 (408)
346 3v7e_A Ribosome-associated pro 24.6 53 0.0018 18.9 2.4 20 123-142 17-36 (82)
347 2ioy_A Periplasmic sugar-bindi 24.6 1.8E+02 0.0062 20.3 9.0 72 96-173 18-91 (283)
348 3v7q_A Probable ribosomal prot 24.3 1.2E+02 0.0041 18.1 4.2 21 122-142 24-44 (101)
349 1t5o_A EIF2BD, translation ini 24.3 2.3E+02 0.008 21.4 8.4 64 104-172 201-266 (351)
350 1jlj_A Gephyrin; globular alph 24.2 1.7E+02 0.0058 19.8 5.8 41 100-140 38-85 (189)
351 3dz1_A Dihydrodipicolinate syn 24.2 2.2E+02 0.0074 21.0 7.0 75 95-172 64-142 (313)
352 1t57_A Conserved protein MTH16 24.2 1.2E+02 0.0043 21.0 4.4 72 95-169 37-110 (206)
353 1of8_A Phospho-2-dehydro-3-deo 24.1 2.4E+02 0.0084 21.6 9.5 129 19-173 67-204 (370)
354 3tdn_A FLR symmetric alpha-bet 24.0 1.8E+02 0.0062 20.3 5.6 48 123-170 38-85 (247)
355 3sm9_A Mglur3, metabotropic gl 23.9 2.6E+02 0.0088 21.8 12.6 94 18-144 185-278 (479)
356 1tk9_A Phosphoheptose isomeras 23.9 1E+02 0.0036 20.2 4.1 39 18-57 110-148 (188)
357 3j21_Z 50S ribosomal protein L 23.8 1.2E+02 0.0041 18.0 4.6 16 124-139 48-63 (99)
358 2fzv_A Putative arsenical resi 23.8 1.9E+02 0.0064 21.1 5.7 46 96-143 76-133 (279)
359 3blx_A Isocitrate dehydrogenas 23.8 2.4E+02 0.0082 21.4 8.2 30 28-57 156-186 (349)
360 2iks_A DNA-binding transcripti 23.5 1.9E+02 0.0066 20.2 10.1 71 96-173 37-109 (293)
361 1s8n_A Putative antiterminator 23.5 1.6E+02 0.0056 19.3 8.6 67 99-172 27-93 (205)
362 2fvy_A D-galactose-binding per 23.3 2E+02 0.0068 20.2 9.1 73 95-173 18-93 (309)
363 1uuy_A CNX1, molybdopterin bio 23.3 1.6E+02 0.0056 19.3 5.2 35 106-140 39-78 (167)
364 2kpo_A Rossmann 2X2 fold prote 23.3 1.2E+02 0.004 17.6 3.9 48 4-55 37-84 (110)
365 2kyr_A Fructose-like phosphotr 23.3 68 0.0023 19.9 2.8 44 99-144 26-71 (111)
366 2xgg_A Microneme protein 2; A/ 23.2 1.2E+02 0.004 19.8 4.2 40 18-57 123-162 (178)
367 3qxc_A Dethiobiotin synthetase 23.1 1.4E+02 0.0047 21.2 4.8 36 18-53 21-57 (242)
368 3tqk_A Phospho-2-dehydro-3-deo 23.1 2.5E+02 0.0085 21.3 11.2 132 19-173 49-186 (346)
369 3h1g_A Chemotaxis protein CHEY 22.9 1.3E+02 0.0044 17.9 6.7 70 99-174 19-91 (129)
370 1ycg_A Nitric oxide reductase; 22.9 2.4E+02 0.0081 21.0 11.8 88 20-143 221-312 (398)
371 3n0r_A Response regulator; sig 22.9 2.1E+02 0.0073 20.5 9.0 72 96-173 171-242 (286)
372 2rjo_A Twin-arginine transloca 22.8 1.5E+02 0.005 21.5 5.1 72 96-173 22-97 (332)
373 2xbl_A Phosphoheptose isomeras 22.6 1.3E+02 0.0043 20.0 4.4 39 18-57 116-154 (198)
374 3qfe_A Putative dihydrodipicol 22.5 2.4E+02 0.0081 20.9 8.3 78 96-174 68-149 (318)
375 3ovp_A Ribulose-phosphate 3-ep 22.2 1.9E+02 0.0064 20.2 5.3 53 101-155 104-156 (228)
376 3cu5_A Two component transcrip 22.2 1.4E+02 0.0049 18.2 5.1 48 122-173 38-86 (141)
377 3a10_A Response regulator; pho 22.1 1.2E+02 0.0042 17.4 7.8 65 100-172 16-81 (116)
378 1m5w_A Pyridoxal phosphate bio 22.0 2.2E+02 0.0076 20.4 7.9 71 37-145 29-99 (243)
379 3dff_A Teicoplanin pseudoaglyc 21.9 2.3E+02 0.0077 20.4 11.6 48 123-170 138-185 (273)
380 3uow_A GMP synthetase; structu 21.8 3.2E+02 0.011 22.1 10.5 48 8-58 245-292 (556)
381 3qvl_A Putative hydantoin race 21.7 77 0.0026 22.5 3.2 19 130-148 171-189 (245)
382 1byk_A Protein (trehalose oper 21.7 2E+02 0.0067 19.6 7.7 67 96-172 19-87 (255)
383 2fep_A Catabolite control prot 21.7 2.1E+02 0.0073 20.0 10.0 71 95-173 32-104 (289)
384 2pbq_A Molybdenum cofactor bio 21.7 1.8E+02 0.0063 19.3 5.6 40 100-140 29-75 (178)
385 1wdn_A GLNBP, glutamine bindin 21.6 1.8E+02 0.006 19.0 5.0 35 103-140 34-68 (226)
386 3vmk_A 3-isopropylmalate dehyd 21.6 77 0.0026 24.3 3.3 28 29-56 179-206 (375)
387 3s5o_A 4-hydroxy-2-oxoglutarat 21.5 2.4E+02 0.0084 20.6 7.0 76 96-172 71-150 (307)
388 2avd_A Catechol-O-methyltransf 21.3 1.9E+02 0.0066 19.4 5.6 26 116-141 125-153 (229)
389 3udu_A 3-isopropylmalate dehyd 21.2 66 0.0023 24.6 2.8 28 29-56 167-194 (361)
390 3mm4_A Histidine kinase homolo 21.2 1.9E+02 0.0065 19.2 7.0 39 132-174 118-161 (206)
391 3lvu_A ABC transporter, peripl 21.2 2.1E+02 0.0073 19.8 5.9 45 95-142 142-186 (258)
392 2qsj_A DNA-binding response re 21.2 1.5E+02 0.0053 18.2 5.9 49 121-173 37-87 (154)
393 1cnz_A IPMDH, IMDH, protein (3 21.1 80 0.0027 24.1 3.3 30 28-57 169-198 (363)
394 3hyn_A Putative signal transdu 21.1 1.6E+02 0.0055 20.2 4.4 45 11-57 74-120 (189)
395 4fe7_A Xylose operon regulator 21.1 2.3E+02 0.0079 21.3 6.0 66 95-172 40-105 (412)
396 2jba_A Phosphate regulon trans 21.0 1.4E+02 0.0047 17.5 4.9 65 100-172 17-84 (127)
397 3u1h_A 3-isopropylmalate dehyd 20.8 82 0.0028 24.4 3.3 27 29-55 186-212 (390)
398 1dc7_A NTRC, nitrogen regulati 20.8 91 0.0031 18.2 3.1 65 101-173 19-84 (124)
399 3c3m_A Response regulator rece 20.5 1.5E+02 0.0052 17.8 7.5 67 99-173 17-86 (138)
400 1jeo_A MJ1247, hypothetical pr 20.4 1.4E+02 0.0047 19.5 4.1 38 18-56 82-119 (180)
401 2a5l_A Trp repressor binding p 20.3 1.3E+02 0.0045 19.9 4.1 39 18-56 5-44 (200)
402 3l3b_A ES1 family protein; ssg 20.3 1.4E+02 0.0049 21.1 4.4 49 6-56 10-65 (242)
403 1yio_A Response regulatory pro 20.2 1.9E+02 0.0066 18.9 8.4 69 98-174 17-86 (208)
404 1a05_A IPMDH, IMDH, 3-isopropy 20.2 86 0.0029 23.9 3.3 29 29-57 165-193 (358)
405 1vlc_A 3-isopropylmalate dehyd 20.2 87 0.003 24.0 3.3 29 29-57 174-202 (366)
406 1w2w_B 5-methylthioribose-1-ph 20.1 85 0.0029 21.5 3.0 63 105-172 26-93 (191)
407 4eq9_A ABC transporter substra 20.0 2E+02 0.0069 19.1 5.2 40 98-140 34-74 (246)
408 3rpe_A MDAB, modulator of drug 20.0 2.3E+02 0.0078 19.7 6.2 45 96-142 47-92 (218)
409 1mb3_A Cell division response 20.0 1.4E+02 0.0049 17.3 7.6 67 99-173 15-84 (124)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.96 E-value=7e-28 Score=164.14 Aligned_cols=140 Identities=16% Similarity=0.221 Sum_probs=118.3
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHH
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDV 97 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (179)
+++|||++|+|+.+..++++|+.+|+..+++++++|+.+...... ...........+...+..++.
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 70 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHT--------------PALDPVLSELLDAEAAHAKDA 70 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCC--------------GGGHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccc--------------cccccccHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999988764211 000001122333444556777
Q ss_pred HHHHHHHhhcCCc-eEEEEEeccChhHHHHH-HHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 98 LDMLDAASKQKHV-SVVAKLYWGDARDKLCE-AVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 98 ~~~~~~~~~~~~~-~~~~~~~~g~~~~~i~~-~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
++.+.+.+.+.|+ ++++.+..|++.+.|++ ++++.++||||||+++++.+.++++||++++++++++||||+||
T Consensus 71 l~~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 71 MRQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146 (146)
T ss_dssp HHHHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence 8888888888899 99999999999999999 99999999999999999999999999999999999999999997
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.95 E-value=4.7e-27 Score=162.81 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=116.6
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcc-cccccCCCCCCCCCchhhhhHHHHHHhhhhhhHH
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDES-RNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQD 96 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (179)
+++|||++|+|+.+..|+++|.++|+..+++++++|+.++..... ....+...+....+. .........+...+..++
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKS-VEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC------------------CHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccc-hhhhHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999987531000 000000000000010 000001122333345566
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
.++.+.+.+...|+++++.+..|++.+.|++++++.++||||||+++++.+.++++||++++++++++|||++||+..
T Consensus 84 ~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~~~~ 161 (162)
T 1mjh_A 84 KMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRKN 161 (162)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEECCCC
T ss_pred HHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEeCCC
Confidence 777777777788999999888899999999999999999999999999999999999999999999999999999754
No 3
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.95 E-value=1.4e-26 Score=156.33 Aligned_cols=136 Identities=16% Similarity=0.191 Sum_probs=114.0
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHh-cCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhh-hhhH
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNL-LEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEV-DLDQ 95 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la-~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 95 (179)
|++|||++|+|+.+..++++|..+| +..+++++++|+.++..... ...... ....+... +..+
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~--------------~~~~~~-~~~~~~~~~~~~~ 65 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYG--------------EAVLAA-YDEIEMKEEEKAK 65 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCH--------------HHHHHH-HHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCccc--------------ccccCc-HHHHHHHHHHHHH
Confidence 5899999999999999999999999 99999999999998764211 001111 11222333 5567
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
+.++.+.+.+...|+++++.+..|++.+.|+++++ ++||||||+++++.+.+++ ||++++++++++||||+||
T Consensus 66 ~~l~~~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 66 LLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEEeC
Confidence 77888888888889999999999999999999999 8999999999999999988 9999999999999999997
No 4
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.95 E-value=6.5e-27 Score=163.38 Aligned_cols=148 Identities=20% Similarity=0.194 Sum_probs=112.2
Q ss_pred CCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCC------CCCchhhhhHHHHHHhh
Q 041485 17 NNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSP------LIPLEEFRDQEVMKQYE 90 (179)
Q Consensus 17 ~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 90 (179)
.+++|||++|+++.+..|+++|..+|+..+++|+++|+.++.... +...+.. ......+ .+..
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~------~~~~ 72 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLE-----ELMDGYSFFYDNAEIELKDI------KEKL 72 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGG-----CCC------------CCTTS------HHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccc-----ccccccccccccccccHHHH------HHHH
Confidence 379999999999999999999999999999999999998764211 0000000 0011111 1112
Q ss_pred hhhhHHHHHHHHHHhhcCCceEEE--EEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEE
Q 041485 91 VDLDQDVLDMLDAASKQKHVSVVA--KLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVT 168 (179)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVl 168 (179)
.+..++.++.+.+.+...|+++++ .+..|++.+.|++++++.++||||||+++++.+.++++||++++++++++||||
T Consensus 73 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVl 152 (170)
T 2dum_A 73 KEEASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVL 152 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEE
Confidence 233455666666666666887777 788899999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC
Q 041485 169 IVKDPSA 175 (179)
Q Consensus 169 vv~~~~~ 175 (179)
+||....
T Consensus 153 vv~~~~~ 159 (170)
T 2dum_A 153 IIKEVDE 159 (170)
T ss_dssp EECCCCC
T ss_pred EEccCCc
Confidence 9997654
No 5
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.94 E-value=1.9e-26 Score=160.21 Aligned_cols=142 Identities=25% Similarity=0.209 Sum_probs=110.9
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEE--EEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhH
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYII--HIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQ 95 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (179)
+++|||++|+|+.+..|+++|+++|+ .+++|+++ |+.+...... +... +. ....+...+..+
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~--------~~~~-~~------~~~~~~~~~~~~ 80 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARA--------ADIL-KD------ESYKVTGTAPIY 80 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC-----------------------------------CCTHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCccccc--------cccc-cc------HHHHHHHHHHHH
Confidence 79999999999999999999999999 99999999 8766532100 0000 00 111122334556
Q ss_pred HHHHHHHHHhhcCCce-EEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCCC
Q 041485 96 DVLDMLDAASKQKHVS-VVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
+.++.+.+.+...+++ +++.+..|++.+.|+++|++.++||||||+++++.+.++++||++++|+++++|||++||+..
T Consensus 81 ~~l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~~~~ 160 (163)
T 1tq8_A 81 EILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTTE 160 (163)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECCC-
T ss_pred HHHHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEeCCC
Confidence 7777788888888887 999898999999999999999999999999999999999999999999999999999999765
Q ss_pred C
Q 041485 175 A 175 (179)
Q Consensus 175 ~ 175 (179)
.
T Consensus 161 ~ 161 (163)
T 1tq8_A 161 G 161 (163)
T ss_dssp -
T ss_pred C
Confidence 4
No 6
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.94 E-value=2.2e-26 Score=157.45 Aligned_cols=147 Identities=23% Similarity=0.308 Sum_probs=97.5
Q ss_pred hhcCCCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhh
Q 041485 13 KMASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVD 92 (179)
Q Consensus 13 ~m~~~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (179)
+|+. +++|||++|+|+.+..++++|+++|+..+++++++|+.++..... .. ..+.......+.. + ...+
T Consensus 2 ~m~~-~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~--~~--~~~~~~~~~~~~~--~----~~~~ 70 (150)
T 3tnj_A 2 HMSV-YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPD--TP--YGTAIPLDTETTY--D----AMLD 70 (150)
T ss_dssp --CC-CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC------------CTTCCCSSSCCCH--H----HHHH
T ss_pred CCCc-cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccc--cc--cccccCcCHHHHH--H----HHHH
Confidence 3555 899999999999999999999999999999999999988753210 00 1111111111111 1 1112
Q ss_pred hhHHHHHHHHHHhhcCCce-EEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 93 LDQDVLDMLDAASKQKHVS-VVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
..++.++.+ +++.++. +++.+..|++.+.|++++++.++||||||+++++.+. +++||++++++++++|||++||
T Consensus 71 ~~~~~l~~~---~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~~pVlvv~ 146 (150)
T 3tnj_A 71 VEKQKLSQI---GNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146 (150)
T ss_dssp HHHHHHHHH---HHHHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCSSEEEEEE
T ss_pred HHHHHHHHH---HHHcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCCCCEEEEe
Confidence 223333333 3333554 4567778999999999999999999999999999888 9999999999999999999999
Q ss_pred CCC
Q 041485 172 DPS 174 (179)
Q Consensus 172 ~~~ 174 (179)
+..
T Consensus 147 ~~~ 149 (150)
T 3tnj_A 147 LRD 149 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 7
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.94 E-value=4.4e-26 Score=157.04 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=112.8
Q ss_pred CCeEEEeec--CCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhH
Q 041485 18 NRSIGVALD--FSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQ 95 (179)
Q Consensus 18 ~~~ILv~vd--~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (179)
+++|||++| +|+.+..++++|.++|+..+++++++|+.++..... ... .. ....+...+..+
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-----------~~~---~~--~~~~~~~~~~~~ 78 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINI-----------FDS---LT--PSKIQAKRKHVE 78 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTC-----------CCS---SH--HHHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccc-----------ccc---CC--HHHHHHHHHHHH
Confidence 899999999 999999999999999999999999999998764210 000 00 112233344556
Q ss_pred HHHHHHHHHhhcCCc-eEEEEEec-cChhHHHHHH-HHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHV-SVVAKLYW-GDARDKLCEA-VEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~-~~~~~~~~-g~~~~~i~~~-a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
+.++.+.+.+.+.|+ .+++.+.. |++.+.|+++ +++.++||||||+++++.+. .++||++++++++++|||++||
T Consensus 79 ~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a~~PVlvV~ 156 (156)
T 3fg9_A 79 DVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKAPISVIVVR 156 (156)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhCCCCEEEeC
Confidence 777777777877888 58998988 9999999999 99999999999999998887 5899999999999999999996
No 8
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.94 E-value=6.2e-27 Score=159.50 Aligned_cols=143 Identities=23% Similarity=0.234 Sum_probs=112.7
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHH
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDV 97 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (179)
|++|||++|+|+.+..++++|+++|+..+++++++|+.+.......... .......... .+...+..++.
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~ 71 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLS----MARPEQLDIP------DDALKDYATEI 71 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBS----SCCCGGGCCC------TTHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccc----ccChhhhhhH------HHHHHHHHHHH
Confidence 6999999999999999999999999999999999999987531110000 0000000001 11122344567
Q ss_pred HHHHHHHhhcCCceE---EEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEE
Q 041485 98 LDMLDAASKQKHVSV---VAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIV 170 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~---~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 170 (179)
++.+.+.+...|+++ ++.+..|++.+.|++++++.++||||||+++++.+.++++||++++++++++|||++|
T Consensus 72 l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 72 AVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred HHHHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEEC
Confidence 777777777788777 8888899999999999999999999999999999999999999999999999999986
No 9
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.94 E-value=3.6e-26 Score=157.59 Aligned_cols=134 Identities=19% Similarity=0.291 Sum_probs=110.3
Q ss_pred HHhhcCCCCeEEEeecC-CccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHh
Q 041485 11 FFKMASNNRSIGVALDF-SKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQY 89 (179)
Q Consensus 11 ~~~m~~~~~~ILv~vd~-s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (179)
...|+ +++|||++|+ |+.+..|+++|+.+|+..+++|+++|+.+..... . +.
T Consensus 19 ~~~mm--~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~----------------~---------~~ 71 (155)
T 3dlo_A 19 FQGMI--YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT----------------K---------DE 71 (155)
T ss_dssp ---CC--CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS----------------C---------HH
T ss_pred ccccc--cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc----------------c---------HH
Confidence 34566 7999999999 9999999999999999999999999998864210 0 11
Q ss_pred hhhhhHHHHHHHHHHhhcCCceEEEE--EeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCE
Q 041485 90 EVDLDQDVLDMLDAASKQKHVSVVAK--LYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPV 167 (179)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pV 167 (179)
..+..++.++.+.+.+.+.++++++. +..|++.+.|++++++.++||||||+++++.+.++++||++++++++++|||
T Consensus 72 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PV 151 (155)
T 3dlo_A 72 DIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPV 151 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCE
Confidence 12334566667777777777766654 5569999999999999999999999999999999999999999999999999
Q ss_pred EEEc
Q 041485 168 TIVK 171 (179)
Q Consensus 168 lvv~ 171 (179)
|+|+
T Consensus 152 LvVr 155 (155)
T 3dlo_A 152 ICIK 155 (155)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 10
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.93 E-value=6.9e-26 Score=152.82 Aligned_cols=135 Identities=31% Similarity=0.379 Sum_probs=102.4
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHH
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDV 97 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (179)
+++|||++|+|+.+..++++|..+|+..+++++++|+.++.... + .+ ..+ .. ..+...+..++.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-----~--~~--~~~-~~------~~~~~~~~~~~~ 65 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDY-----L--GE--PFF-EE------ALRRRLERAEGV 65 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC------------------------------CHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCcc-----c--cc--cch-HH------HHHHHHHHHHHH
Confidence 69999999999999999999999999999999999998753210 0 00 000 00 001111222333
Q ss_pred HHHHHHHhhcCCc-eEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 98 LDMLDAASKQKHV-SVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 98 ~~~~~~~~~~~~~-~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
++.+.+. .|+ ++++.+..|++.+.|++++++.++||||||+++++.+.++++||++++++++++|||++||
T Consensus 66 l~~~~~~---~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 66 LEEARAL---TGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp HHHHHHH---HCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHH---cCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEeC
Confidence 3333332 566 6667777899999999999999999999999999999999999999999999999999997
No 11
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.93 E-value=2.2e-25 Score=156.31 Aligned_cols=150 Identities=27% Similarity=0.503 Sum_probs=104.3
Q ss_pred CCeEEEeecCCc---------cHHHHHHHHHHHhcC---CCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHH
Q 041485 18 NRSIGVALDFSK---------GSKLALKWAIDNLLE---KGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEV 85 (179)
Q Consensus 18 ~~~ILv~vd~s~---------~s~~al~~a~~la~~---~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (179)
+++|||++|+++ .+..++++|++++.+ .+++|+++|+.+..... +...+......... ..
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~-----~~~~~~~~~~~~~~---~~ 76 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDG-----FDDVDSIYASPEDF---RD 76 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC---------------CCCCSHHHH---HH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeeccccc-----ccccccccCCHHHH---HH
Confidence 799999999999 999999999998744 68999999998653210 00000000111111 11
Q ss_pred HHHhhhhhhHHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCC
Q 041485 86 MKQYEVDLDQDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASC 165 (179)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~ 165 (179)
..+...+..++.++.+.+.+...|+++++++..|++.+.|++++++.++||||||+++++.+.++++||++++|+++++|
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~ 156 (175)
T 2gm3_A 77 MRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAEC 156 (175)
T ss_dssp HTTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCC
Confidence 11112223455666677777777899999888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCC
Q 041485 166 PVTIVKDPSA 175 (179)
Q Consensus 166 pVlvv~~~~~ 175 (179)
|||+||....
T Consensus 157 pVlvv~~~~~ 166 (175)
T 2gm3_A 157 PVMTIKRNAD 166 (175)
T ss_dssp CEEEEECCGG
T ss_pred CEEEEcCCcC
Confidence 9999997654
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.93 E-value=3.6e-25 Score=150.11 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=105.5
Q ss_pred CCeEEEeecCCcc--HHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhH
Q 041485 18 NRSIGVALDFSKG--SKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQ 95 (179)
Q Consensus 18 ~~~ILv~vd~s~~--s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (179)
.++|||++|+|+. +..++++|.++|+..+++++++|+.+...... ..+..... . ....++..+
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~------~~~~~~~~--~-------~~~~~~~~~ 65 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYA------SLGMAYTA--E-------LPGMDELRE 65 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC-------------------------------CHHHHHH
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccc------cccccccc--h-------hhhHHHHHH
Confidence 3899999999999 99999999999999999999999998753211 00100000 0 011122334
Q ss_pred HHHHHHHHHhhcCC---ceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKH---VSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
+..+.+.+.+++.+ .++++.+..|++.+.|++++++.++||||||+++ +.+.++++||++++++++++||||+||
T Consensus 66 ~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 66 GSETQLKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp HHHHHHHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCCCCEEEeC
Confidence 55556666666654 4678888899999999999999999999999995 788889999999999999999999997
No 13
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.91 E-value=8.4e-24 Score=161.08 Aligned_cols=148 Identities=15% Similarity=0.178 Sum_probs=115.6
Q ss_pred hcCCCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhh
Q 041485 14 MASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDL 93 (179)
Q Consensus 14 m~~~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (179)
|+. +++|||++|+|+.+..|+++|+.+|+..+++|+++|+.++.... ..+ .... .......+...+.
T Consensus 4 M~~-~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~-------~~~--~~~~---~~~~~~~~~~~~~ 70 (319)
T 3olq_A 4 MEK-YQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYD-------MTT--LLSP---DERNAMRKGVINQ 70 (319)
T ss_dssp -CC-SCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGG-------CTT--TSCH---HHHHHHHHHHHHH
T ss_pred ccc-cceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchh-------hcc--ccCh---hhHHHHHHHHHHH
Confidence 554 89999999999999999999999999999999999998753211 000 1111 1111222223334
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEe-ccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 94 DQDVLDMLDAASKQKHVSVVAKLY-WGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.++.+.+.+...++++++.+. .|++.+.|.+++++.++||||||+++++.+.++++||++.+++++++||||+||.
T Consensus 71 ~~~~l~~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~ 150 (319)
T 3olq_A 71 KTAWIKQQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKD 150 (319)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEES
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecC
Confidence 456666666677778999999988 8999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q 041485 173 PS 174 (179)
Q Consensus 173 ~~ 174 (179)
..
T Consensus 151 ~~ 152 (319)
T 3olq_A 151 KE 152 (319)
T ss_dssp SC
T ss_pred cc
Confidence 65
No 14
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.91 E-value=4.4e-24 Score=144.46 Aligned_cols=138 Identities=23% Similarity=0.263 Sum_probs=101.3
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHH
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDV 97 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (179)
+++|||++|+|+.+..++++|..+|+..+++++++|+..+... .+ .+ . . .... . ...++..++.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~-----~~--~~--~-~--~~~~-~---~~~~~~~~~~ 65 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSD-----LY--TG--L-I--DVNM-S---SMQDRISTET 65 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGG-----GC--CC--C-E--EHHH-H---HHTTCCCCHH
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchh-----hh--cc--c-c--ccch-H---HHHHHHHHHH
Confidence 6999999999999999999999999999999999999843210 00 00 0 0 0000 0 1111111222
Q ss_pred HHHHHHHhhcCCceE-EEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCCC
Q 041485 98 LDMLDAASKQKHVSV-VAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
.+.+.+.....|+.+ ++.+..|++.+.|++++++.++||||||++ ++.+.+ +||++++++++++|||++||...
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~~~vl~~~~~pVlvv~~~~ 140 (141)
T 1jmv_A 66 QKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSSTRQVMNTIKIDMLVVPLRD 140 (141)
T ss_dssp HHHHHHHHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHHHHHHTTCCSEEEEEECCC
T ss_pred HHHHHHHHHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchHHHHHhcCCCCEEEeeCCC
Confidence 333334444456665 566778999999999999999999999999 887776 48999999999999999999754
No 15
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.89 E-value=2.2e-23 Score=157.33 Aligned_cols=141 Identities=21% Similarity=0.249 Sum_probs=115.0
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHH
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDV 97 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (179)
+++|||++|+|+.+..|+++|..+|+..+++|+++|+.+...... + ..+ .... ...+...+..++.
T Consensus 22 ~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~----~-~~~---~~~~------~~~~~~~~~~~~~ 87 (294)
T 3loq_A 22 SNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLST----V-SGG---IDID------HYIDEMSEKAEEV 87 (294)
T ss_dssp TCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC----------C---CCTT------HHHHHHHHHHHHH
T ss_pred hccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCccccc----c-ccc---ccHH------HHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999988754210 0 000 0111 1112233445677
Q ss_pred HHHHHHHhhcCCceEEE-EEe-ccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCCC
Q 041485 98 LDMLDAASKQKHVSVVA-KLY-WGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~-~~~-~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
++.+.+.+...|+++++ .+. .|++.+.| ++++.++||||||+++++.+.++++||++++++++++|||++||...
T Consensus 88 l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~ 164 (294)
T 3loq_A 88 LPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHDM 164 (294)
T ss_dssp HHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCCT
T ss_pred HHHHHHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecCcc
Confidence 77788888888999998 777 89999999 99999999999999999988889999999999999999999999875
No 16
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.89 E-value=2.1e-22 Score=151.72 Aligned_cols=123 Identities=18% Similarity=0.119 Sum_probs=107.9
Q ss_pred CCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHH
Q 041485 17 NNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQD 96 (179)
Q Consensus 17 ~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (179)
.+++|||++|+|+.+..++++|+.+|+..+++++++|+.++. ..++
T Consensus 6 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~----------------------------------~~~~ 51 (290)
T 3mt0_A 6 AIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRR----------------------------------DHSA 51 (290)
T ss_dssp TCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSS----------------------------------CCHH
T ss_pred hhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCcH----------------------------------HHHH
Confidence 389999999999999999999999999999999999997631 1134
Q ss_pred HHHHHHHHhhcCCceEEEEEe-ccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLY-WGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
.++.+.+.+...|+++++.+. .|++.+.|.+++++.++||||||+++++.+.+.++||++.+++++++|||+++|..
T Consensus 52 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~~ 129 (290)
T 3mt0_A 52 ALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTA 129 (290)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecCC
Confidence 445555566678899999887 47899999999999999999999999998999999999999999999999999954
No 17
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.88 E-value=1.4e-22 Score=150.83 Aligned_cols=149 Identities=18% Similarity=0.071 Sum_probs=112.4
Q ss_pred CeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhh-HHHHHHhhhhhhHHH
Q 041485 19 RSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRD-QEVMKQYEVDLDQDV 97 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 97 (179)
++|||++|+|+.+..++++|..+|+..+++++++|+.+..... .....+.... ...... ++...+...+..++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLAR----IPELLDFGAL-TVPVPVLRTELERALALRGEAV 75 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHT----HHHHC--------CHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcc----cccccCchHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999998753210 0000010000 001100 011122233445677
Q ss_pred HHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCc-ccccccccchhHHHhhcCCCCEEEEcCCC
Q 041485 98 LDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLG-TIQRVLLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~-~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
++.+.+.+...|+++++.+..|++.+.|+++ +.++||||||+++++ .+.++++||++++++++++|||++||...
T Consensus 76 l~~~~~~~~~~g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~~~ 151 (268)
T 3ab8_A 76 LERVRQSALAAGVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGEP 151 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECSSC
T ss_pred HHHHHHHHHhCCCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECCCC
Confidence 7777777778899999988899999999999 778999999999988 88889999999999999999999999754
No 18
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.88 E-value=2.3e-22 Score=151.44 Aligned_cols=138 Identities=16% Similarity=0.132 Sum_probs=104.4
Q ss_pred CCCeEEEeecCCcc-------HHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHh
Q 041485 17 NNRSIGVALDFSKG-------SKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQY 89 (179)
Q Consensus 17 ~~~~ILv~vd~s~~-------s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (179)
.+++|||++|+|+. +..++++|..+|+..+++++++|+.+...... ..+ .. . ..+
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-----------~~~--~~---~-~~~- 194 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSS-----------ADP--TF---Q-LSE- 194 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC----------------------CH---H-HHH-
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccc-----------cCc--hh---H-HHH-
Confidence 48999999999998 89999999999999999999999998753211 001 01 0 111
Q ss_pred hhhhhHHHHHHHHHHhhcCCce-EEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEE
Q 041485 90 EVDLDQDVLDMLDAASKQKHVS-VVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVT 168 (179)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVl 168 (179)
+..++..+.+.+.+++.++. +++.+..|++.+.|++++++.++||||||+++++.+.++++||++.+++++++||||
T Consensus 195 --~~~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVL 272 (290)
T 3mt0_A 195 --TIEARYREACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVL 272 (290)
T ss_dssp --HHHHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEE
T ss_pred --HHHHHHHHHHHHHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEE
Confidence 11122223333344444653 456677899999999999999999999999999999999999999999999999999
Q ss_pred EEcCCC
Q 041485 169 IVKDPS 174 (179)
Q Consensus 169 vv~~~~ 174 (179)
+||+..
T Consensus 273 vv~~~~ 278 (290)
T 3mt0_A 273 VLKPDD 278 (290)
T ss_dssp EECCHH
T ss_pred EECCCC
Confidence 998754
No 19
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.88 E-value=4.2e-22 Score=134.27 Aligned_cols=131 Identities=16% Similarity=0.106 Sum_probs=97.0
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEe-CC-CCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhH
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIK-LP-QGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQ 95 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (179)
+++|||++|+|+.+..|+++|..+|+..+++++++|+. +. +... .+...+.+ .. .. ..+...+..+
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~----~~~~~~~~-~~-~~------~~~~~~~~~~ 71 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLER----ANVTFGLP-FP-PE------IKEESKKRIE 71 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHH----HHHHHCCC-CC-TH------HHHHHHHHHH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccc----cccccCCC-CC-hH------HHHHHHHHHH
Confidence 79999999999999999999999999999999999998 53 1000 00000000 00 11 1111223334
Q ss_pred HHHHHHHHH--hhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAA--SKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
+.++.+ +. ....| ++++.+..|++.+.|++++++.++||||||++++ |++++++++++|||++||
T Consensus 72 ~~l~~~-~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 72 RRLREV-WEKLTGSTE-IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp HHHHHH-HHHHHSCCC-CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHHHHSSSEEEECC
T ss_pred HHHHHH-HHHhhccCC-cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHHHhCCCceEeeC
Confidence 555555 44 35557 7778888899999999999999999999998865 899999999999999986
No 20
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.88 E-value=2.8e-22 Score=152.25 Aligned_cols=140 Identities=25% Similarity=0.373 Sum_probs=109.8
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHH
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDV 97 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (179)
+++|||++|+|+.+..|+++|..+|+..+++|+++|+.++... .+.. + ..+ .. ..+...+..++.
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~-----~~~~-~--~~~-~~------~~~~~~~~~~~~ 83 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVA-----TWLE-V--PLP-PG------VLRWQQDHGRHL 83 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCC-----CTTC-C--CCC-HH------HHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCccc-----cccc-C--CCC-ch------hhHHHHHHHHHH
Confidence 7999999999999999999999999999999999999874321 1110 0 111 11 111122333455
Q ss_pred HHHHHHHhhcC-----CceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 98 LDMLDAASKQK-----HVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 98 ~~~~~~~~~~~-----~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
++.+.+.+.+. ++++++.+..|++.+.|+++++ ++||||||+++++.+.++++||++++++++++|||++||.
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~ 161 (309)
T 3cis_A 84 IDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHD 161 (309)
T ss_dssp HHHHHHHHHHHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECT
T ss_pred HHHHHHHHHHhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcC
Confidence 55555555543 8889998889999999999997 6999999999999999999999999999999999999997
Q ss_pred CC
Q 041485 173 PS 174 (179)
Q Consensus 173 ~~ 174 (179)
..
T Consensus 162 ~~ 163 (309)
T 3cis_A 162 ED 163 (309)
T ss_dssp TC
T ss_pred Cc
Confidence 65
No 21
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.87 E-value=1e-21 Score=149.48 Aligned_cols=147 Identities=12% Similarity=0.138 Sum_probs=110.3
Q ss_pred CCCeEEEeecCCc-------cHHHHHHHHHHHhcCC--CCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHH
Q 041485 17 NNRSIGVALDFSK-------GSKLALKWAIDNLLEK--GDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMK 87 (179)
Q Consensus 17 ~~~~ILv~vd~s~-------~s~~al~~a~~la~~~--~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (179)
.+++|||++|+++ .+..++++|..+++.. +++++++|+.+...... ..+ .+ ...... ..
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~------~~~---~~--~~~~~~-~~ 222 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINI------AIE---LP--DFDPNL-YN 222 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSC------CTT---CT--TCCHHH-HH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhh------hcc---CC--cccHHH-HH
Confidence 4799999999999 5699999999999998 99999999998764211 000 01 111111 11
Q ss_pred HhhhhhhHHHHHHHHHHhhcCCc-eEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCC
Q 041485 88 QYEVDLDQDVLDMLDAASKQKHV-SVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCP 166 (179)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~p 166 (179)
++..++..+.+.+.+++.++ .++.++..|++.+.|++++++.++||||||+++++.+.++++||++++++++++||
T Consensus 223 ---~~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~p 299 (319)
T 3olq_A 223 ---NALRGQHLIAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCD 299 (319)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSE
T ss_pred ---HHHHHHHHHHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCC
Confidence 11222333344444455555 34556778999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCC
Q 041485 167 VTIVKDPSAAHG 178 (179)
Q Consensus 167 Vlvv~~~~~~~~ 178 (179)
||+||+.+..+.
T Consensus 300 VLvv~~~~~~~p 311 (319)
T 3olq_A 300 LLAIKPDGFTCP 311 (319)
T ss_dssp EEEECCTTCCCC
T ss_pred EEEECCCCCCCC
Confidence 999998775543
No 22
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.87 E-value=1.5e-21 Score=147.26 Aligned_cols=125 Identities=26% Similarity=0.363 Sum_probs=110.9
Q ss_pred CCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHH
Q 041485 17 NNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQD 96 (179)
Q Consensus 17 ~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (179)
.+++|||++|+++.+..++++|..+++..+++++++|+.+... .++
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~----------------------------------~~~ 214 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD----------------------------------KTA 214 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC----------------------------------CHH
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch----------------------------------HHH
Confidence 4799999999999999999999999999999999999987641 134
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCCCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDPSA 175 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~ 175 (179)
.++.+.+.+.+.++++++.+..|++.+.|.+++++.++||||||+++++.+.++++||++.+++++++||||+||+..+
T Consensus 215 ~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~~~~ 293 (294)
T 3loq_A 215 DLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKRGDD 293 (294)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECSCTT
T ss_pred HHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECCCCC
Confidence 4455556666678888888888999999999999999999999999999999999999999999999999999998653
No 23
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.86 E-value=8.8e-21 Score=143.99 Aligned_cols=136 Identities=23% Similarity=0.285 Sum_probs=104.7
Q ss_pred CCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHH
Q 041485 17 NNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQD 96 (179)
Q Consensus 17 ~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (179)
.+++|||++|+++.+..++++|..+|+..+++++++|+.++.... + . +.... +... +..++
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~---------~--~-~~~~~---~~~~----~~~~~ 230 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS---------E--W-PGIDW---PATQ----SMAEQ 230 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCT---------T--C-SSCCH---HHHH----HHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeeccccc---------C--C-CcccH---HHHH----HHHHH
Confidence 378999999999999999999999999999999999998764210 0 0 00011 1111 11222
Q ss_pred HHHHHHHHhhc--CCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 97 VLDMLDAASKQ--KHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 97 ~~~~~~~~~~~--~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
.++.+.+.+.+ .++++++.+..|++.+.|+++++ ++||||||+++++.+.++++||++++|+++++|||++||+.
T Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 231 VLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARES 307 (309)
T ss_dssp HHHHHHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEECC-
T ss_pred HHHHHHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeCCC
Confidence 23333333322 47888888889999999999998 79999999999999999999999999999999999999975
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.81 E-value=1.2e-19 Score=134.90 Aligned_cols=116 Identities=21% Similarity=0.206 Sum_probs=99.7
Q ss_pred CCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHH
Q 041485 17 NNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQD 96 (179)
Q Consensus 17 ~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (179)
.+++|||++|+++.+..++++|..++...+++++++|+.++. +..++
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~---------------------------------~~~~~ 199 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP---------------------------------ARAEA 199 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH---------------------------------HHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH---------------------------------HHHHH
Confidence 378999999999999999999999999999999999997652 01133
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
.++.+.+.+.+.|+++++.+..|++.+.|++++++. ||||||+ .+.++++||++++++++++||||++|
T Consensus 200 ~l~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 200 WALEAEAYLRDHGVEASALVLGGDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHcCCceEEEEeCCChHHHHHHHHHhC--CEEEECC----cccccEeccHHHHHHhcCCCCEEEeC
Confidence 445555666667888888888899999999999997 9999998 67788999999999999999999986
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=97.21 E-value=0.017 Score=37.73 Aligned_cols=130 Identities=14% Similarity=-0.005 Sum_probs=91.4
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCC-CEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHH
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKG-DTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQD 96 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~-~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (179)
|++|||.+.-+-.+....+....+..... ..++++-=..+. ..|-. ......+.+++
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~VLVPa~~~------~a~~~----------------e~~~a~~~A~~ 58 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQDPEARFVLLVPAVPP------PGWVY----------------EENEVRRRAEE 58 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEEEEEEECC------CCSCC------------------CHHHHHHHH
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCCCceEEEEEecCCCC------ccccc----------------ChHHHHHHHHH
Confidence 47899999988888877666566665554 676555433321 11100 01112233466
Q ss_pred HHHHHHHHhhcCCceEE-EEEeccChhHHHHHHHHhCC--CCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 97 VLDMLDAASKQKHVSVV-AKLYWGDARDKLCEAVEAMK--LDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~-~~~~~g~~~~~i~~~a~~~~--~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
.++.....++..|..++ -.+..++|...+.......+ +|=||+.+..+ ..+++|.-..+++.=+ ...||+=+=
T Consensus 59 ~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph-~vs~~fh~DwasrAr~-~gvPVlhl~ 134 (138)
T 2iel_A 59 EAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPP-GLSRWLRLDVHTQAER-FGLPVIHVI 134 (138)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCT-TTCHHHHTTHHHHGGG-GSSCEEEEE
T ss_pred HHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCc-hHHHHHhccHHHHHHh-cCCCEEEEe
Confidence 67777777888999988 88989999999999999999 99999998865 5666777777777666 899998653
No 26
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=97.08 E-value=0.0061 Score=48.51 Aligned_cols=109 Identities=12% Similarity=0.090 Sum_probs=78.8
Q ss_pred hHHHHHHHHhhcCCCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhH
Q 041485 4 TLNKLIFFFKMASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQ 83 (179)
Q Consensus 4 ~~~~~~~~~~m~~~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (179)
.+.+.+....|..+.++|+|+++|...|..++..+.++....+.++.++|+.......
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~---------------------- 61 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGR---------------------- 61 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTH----------------------
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCcc----------------------
Confidence 4566777778876678999999999999999999988887788899999997654200
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhcCCceEEEEEec--------c-Ch--------hHHHHHHHHhCCCCEEEEecCC
Q 041485 84 EVMKQYEVDLDQDVLDMLDAASKQKHVSVVAKLYW--------G-DA--------RDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g-~~--------~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
...+..+.+.+.++..|+++.+.-.. | ++ -..+.++|++.+++.|+.|++.
T Consensus 62 ---------~s~~~~~~v~~~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~ 129 (464)
T 3a2k_A 62 ---------ESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHG 129 (464)
T ss_dssp ---------HHHHHHHHHHHHHHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCH
T ss_pred ---------ccHHHHHHHHHHHHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCCh
Confidence 01233455677777788877664332 1 11 1445567888999999999763
No 27
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=97.06 E-value=0.0092 Score=45.03 Aligned_cols=106 Identities=11% Similarity=0.001 Sum_probs=72.1
Q ss_pred HHHHHHHHhhcCCCCeEEEeecCCccHHHHHHHHHHHhcCCCCE-EEEEEEeCCCCCcccccccCCCCCCCCCchhhhhH
Q 041485 5 LNKLIFFFKMASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDT-LYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQ 83 (179)
Q Consensus 5 ~~~~~~~~~m~~~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~-l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (179)
+.+.+....|..+.++|+|+++|...|..++..+.++....+.+ +.++|+.......
T Consensus 11 ~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~---------------------- 68 (317)
T 1wy5_A 11 VLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRES---------------------- 68 (317)
T ss_dssp HHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTH----------------------
T ss_pred HHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcc----------------------
Confidence 34456666666657899999999999999998888876666777 9999997653210
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhcCCceEEEEEec--------c-Ch--------hHHHHHHHHhCCCCEEEEecC
Q 041485 84 EVMKQYEVDLDQDVLDMLDAASKQKHVSVVAKLYW--------G-DA--------RDKLCEAVEAMKLDSLVMGSR 142 (179)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g-~~--------~~~i~~~a~~~~~dlvVlg~~ 142 (179)
..+..+.+.+.++..|+++.+.-.. | ++ ...+.+++++.+++.|+.|++
T Consensus 69 ----------s~~~~~~v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~ 134 (317)
T 1wy5_A 69 ----------AERDEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHH 134 (317)
T ss_dssp ----------HHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCC
T ss_pred ----------cHHHHHHHHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 0223344556666667776654321 1 11 124556788899999999976
No 28
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=95.15 E-value=0.22 Score=34.08 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHHH---HhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEAV---EAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a---~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
...+.+.+.+++.|++++..+..- ...+.+.+|+ ++.+++.+|.|......+... +.-.+..||+-||
T Consensus 36 ~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGv--------vAa~T~~PVIGVP 107 (181)
T 4b4k_A 36 ETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM--------VAAKTNLPVIGVP 107 (181)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH--------HHTTCCSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhh--------HHhcCCCCEEEEe
Confidence 444556667778899999888763 4455555554 557889999998776665543 5568899999999
Q ss_pred CCCC
Q 041485 172 DPSA 175 (179)
Q Consensus 172 ~~~~ 175 (179)
....
T Consensus 108 v~s~ 111 (181)
T 4b4k_A 108 VQSK 111 (181)
T ss_dssp CCCT
T ss_pred cCCC
Confidence 8653
No 29
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=94.11 E-value=0.32 Score=33.11 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHH---HHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEA---VEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~---a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
...+.+...+++.|++++..+..- ...+.+.+| +++.+++.+|.+.....++... +.-.+.+||+-||
T Consensus 26 ~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgv--------vA~~t~~PVIgVP 97 (173)
T 4grd_A 26 DVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGM--------LAAKTTVPVLGVP 97 (173)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHH--------HHHHCCSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhh--------heecCCCCEEEEE
Confidence 344455566778899988877663 444455555 5557899999887766665543 5557899999999
Q ss_pred CCC
Q 041485 172 DPS 174 (179)
Q Consensus 172 ~~~ 174 (179)
-..
T Consensus 98 v~~ 100 (173)
T 4grd_A 98 VAS 100 (173)
T ss_dssp ECC
T ss_pred cCC
Confidence 654
No 30
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=94.03 E-value=0.26 Score=33.39 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHH---HHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEA---VEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~---a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
...+.+...+++.|++++..+..- ...+.+.++ +++.+++.+|.+.....++... +.-.+++||+-||
T Consensus 20 ~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP 91 (169)
T 3trh_A 20 STMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGT--------IAAHTLKPVIGVP 91 (169)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHH--------HHHTCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH--------HHhcCCCCEEEee
Confidence 444555667778899998887663 444555555 5557899888887766665543 5668899999999
Q ss_pred CCC
Q 041485 172 DPS 174 (179)
Q Consensus 172 ~~~ 174 (179)
...
T Consensus 92 ~~~ 94 (169)
T 3trh_A 92 MAG 94 (169)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 31
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=93.91 E-value=0.65 Score=35.06 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=61.8
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHH
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDV 97 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (179)
+.+++|++++...|...+..+.+.....+.++.++|+...... .+.
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~----------------------------------~et 91 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF----------------------------------QEM 91 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC----------------------------------HHH
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC----------------------------------HHH
Confidence 5789999999999999999998887655667889998665421 133
Q ss_pred HHHHHHHhhcCCceEEEEEec-----cC-h-------------hHHHHHHHHhCCCCEEEEecCC
Q 041485 98 LDMLDAASKQKHVSVVAKLYW-----GD-A-------------RDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~-----g~-~-------------~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
.+.+.+.++..|+++.+.... |. . ...+.+.+++.+++.++.|.+.
T Consensus 92 ~~~v~~~~~~~gi~l~v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~ 156 (325)
T 1zun_A 92 YRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARR 156 (325)
T ss_dssp HHHHHHHHHTTTCCEEEECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCT
T ss_pred HHHHHHHHHHcCCCEEEEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 344555566667766553211 21 0 0235566777789999999763
No 32
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=93.85 E-value=0.52 Score=31.88 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHHHHh---CCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEAVEA---MKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~---~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
...+.+...+++.|+.++..+..- ...+.+.+++++ .+++.+|.+......+... +.-.+++||+-||
T Consensus 19 ~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP 90 (166)
T 3oow_A 19 STMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGM--------VAAKTTLPVLGVP 90 (166)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH--------HHHTCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHH--------HHhccCCCEEEee
Confidence 444555667778899998887663 555666666554 5689999887766665543 5668899999999
Q ss_pred CCC
Q 041485 172 DPS 174 (179)
Q Consensus 172 ~~~ 174 (179)
...
T Consensus 91 ~~~ 93 (166)
T 3oow_A 91 VKS 93 (166)
T ss_dssp CCC
T ss_pred cCc
Confidence 754
No 33
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=93.84 E-value=0.38 Score=32.22 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
...+.+...+++.|++++..+..- ...+.+.+++++...+.+|.+.....++... +.-.+++||+-||.
T Consensus 13 ~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgv--------va~~t~~PVIgVP~ 82 (157)
T 2ywx_A 13 KIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGV--------VASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHH--------HHTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHH--------HHhccCCCEEEecC
Confidence 344455566677899988888663 6778888888876568888887766665543 56678999999997
No 34
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=93.74 E-value=0.47 Score=32.34 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHHHH---hCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEAVE---AMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~---~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
...+.+...+++.|++++..+..- ...+.+.++++ +.+++.+|.+.....++... +.-.+++||+-||
T Consensus 26 ~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP 97 (174)
T 3kuu_A 26 ATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGM--------LAAKTLVPVLGVP 97 (174)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHH--------HHHTCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH--------HHhccCCCEEEee
Confidence 444555667778899998887663 55566666654 46789888887666655543 5668899999999
Q ss_pred CCC
Q 041485 172 DPS 174 (179)
Q Consensus 172 ~~~ 174 (179)
...
T Consensus 98 ~~~ 100 (174)
T 3kuu_A 98 VQS 100 (174)
T ss_dssp ECC
T ss_pred CCC
Confidence 654
No 35
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=93.63 E-value=0.56 Score=37.40 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHHHHHHHHhhcCC
Q 041485 30 GSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVLDMLDAASKQKH 109 (179)
Q Consensus 30 ~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (179)
....||..|.+.+...+.++..|++.++.... . ........-+.+..+.+.+++.|
T Consensus 50 ~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~------------------~------~~~r~~Fl~~sL~~L~~~L~~~G 105 (482)
T 2xry_A 50 EDNWALLFSRAIAKEANVPVVVVFCLTDEFLE------------------A------GIRQYEFMLKGLQELEVSLSRKK 105 (482)
T ss_dssp SSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG------------------S------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHcCCcEEEEEEeChhhhc------------------c------CHHHHHHHHHHHHHHHHHHHHcC
Confidence 35567888888776667789999999875310 0 01112233466667777777778
Q ss_pred ceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 110 VSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 110 ~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
+.+. +..|++.+.|.+.+++.+++.|+...... +... .....+.....|++..+..
T Consensus 106 ~~L~--v~~g~~~~~l~~l~~~~~~~~V~~~~~~~-~~~~----~~~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 106 IPSF--FLRGDPGEKISRFVKDYNAGTLVTDFSPL-RIKN----QWIEKVISGISIPFFEVDA 161 (482)
T ss_dssp CCEE--EEESCHHHHHHHHHHHTTCSEEEEECCCS-HHHH----HHHHHHHHHCCSCEEEECC
T ss_pred CcEE--EEeCCHHHHHHHHHHHcCCCEEEEecccc-hhHH----HHHHHHHHHcCCEEEEEeC
Confidence 7765 45699999999999999999999875432 2111 1223444445888877754
No 36
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=93.40 E-value=0.53 Score=31.63 Aligned_cols=71 Identities=7% Similarity=0.054 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHHHH---hC-CCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEE
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEAVE---AM-KLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIV 170 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~---~~-~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 170 (179)
...+.+...+++.|++++..+..- ...+.+.++++ +. +++.+|.+.-...++... +.-.+++||+-|
T Consensus 16 ~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgV 87 (159)
T 3rg8_A 16 GHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGF--------VDGFVKGATIAC 87 (159)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHH--------HHHHSSSCEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHH--------HHhccCCCEEEe
Confidence 444555667778899999887663 55556666654 33 589999987766665543 555789999999
Q ss_pred cCCC
Q 041485 171 KDPS 174 (179)
Q Consensus 171 ~~~~ 174 (179)
|...
T Consensus 88 P~~~ 91 (159)
T 3rg8_A 88 PPPS 91 (159)
T ss_dssp CCCC
T ss_pred eCCC
Confidence 9654
No 37
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=93.32 E-value=0.52 Score=31.98 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHHHH---hCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEAVE---AMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~---~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
...+.+...+++.|++++..+..- ...+.+.++++ +.+++.+|.+......+... +.-.+++||+-||
T Consensus 25 ~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP 96 (170)
T 1xmp_A 25 ETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM--------VAAKTNLPVIGVP 96 (170)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--------HHTTCCSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH--------HHhccCCCEEEee
Confidence 344455566678899998888663 55666667765 45688888887766665543 5667899999999
Q ss_pred CCC
Q 041485 172 DPS 174 (179)
Q Consensus 172 ~~~ 174 (179)
...
T Consensus 97 ~~~ 99 (170)
T 1xmp_A 97 VQS 99 (170)
T ss_dssp ECC
T ss_pred CCC
Confidence 755
No 38
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=93.30 E-value=0.22 Score=33.95 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHH---HHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEA---VEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~---a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
...+.+...+++.|++++..+..- ...+.+.++ +++.+++.+|.+.....++... +.-.+++||+-||
T Consensus 21 ~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP 92 (174)
T 3lp6_A 21 PVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGM--------VAAATPLPVIGVP 92 (174)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHH--------HHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHH--------HHhccCCCEEEee
Confidence 444555666778899988877663 344444444 5667899888887766655543 5557899999998
Q ss_pred CCC
Q 041485 172 DPS 174 (179)
Q Consensus 172 ~~~ 174 (179)
...
T Consensus 93 ~~~ 95 (174)
T 3lp6_A 93 VPL 95 (174)
T ss_dssp ECC
T ss_pred CCC
Confidence 653
No 39
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=93.03 E-value=0.21 Score=33.69 Aligned_cols=71 Identities=8% Similarity=0.102 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHHHH---hCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEAVE---AMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~---~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
...+.+...+++.|++++..+..- ...+.+.++++ +.+++.+|.+.-...++... +.-.+++||+-||
T Consensus 17 ~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP 88 (163)
T 3ors_A 17 KIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGM--------VASLTTLPVIGVP 88 (163)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--------HHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH--------HHhccCCCEEEee
Confidence 444555666778899998887663 55566666654 46789888887666665543 5557899999998
Q ss_pred CCC
Q 041485 172 DPS 174 (179)
Q Consensus 172 ~~~ 174 (179)
...
T Consensus 89 ~~~ 91 (163)
T 3ors_A 89 IET 91 (163)
T ss_dssp ECC
T ss_pred CCC
Confidence 654
No 40
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=92.78 E-value=0.73 Score=36.23 Aligned_cols=41 Identities=27% Similarity=0.203 Sum_probs=35.7
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcC-CCCEEEEEEEeCCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLE-KGDTLYIIHIKLPQ 58 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~-~~~~l~ll~v~~~~ 58 (179)
.++|+|++++...|..++..+.++... .+.++.++|+....
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhgl 54 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGL 54 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSC
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCC
Confidence 588999999999999999998888776 78899999997654
No 41
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=92.76 E-value=0.33 Score=35.38 Aligned_cols=96 Identities=11% Similarity=0.028 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHHHhcCCCC--EEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHHHHHHHHhh
Q 041485 29 KGSKLALKWAIDNLLEKGD--TLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVLDMLDAASK 106 (179)
Q Consensus 29 ~~s~~al~~a~~la~~~~~--~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (179)
+.+..|++.|.++... +. +++++.+-.+.. ++.++.+...
T Consensus 40 p~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~a-----------------------------------~~~lr~ala~-- 81 (255)
T 1efv_B 40 PFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQC-----------------------------------QETIRTALAM-- 81 (255)
T ss_dssp HHHHHHHHHHHHHHHT-TSCSEEEEEEEESTTH-----------------------------------HHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc-CCCceEEEEEeCChhH-----------------------------------HHHHHHHHhc--
Confidence 4578999999999876 66 899998875421 2222222222
Q ss_pred cCCceEEEEEe------cc----ChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEE
Q 041485 107 QKHVSVVAKLY------WG----DARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVT 168 (179)
Q Consensus 107 ~~~~~~~~~~~------~g----~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVl 168 (179)
|.+--+++. .+ ..+..|...+++.++|+|++|........ +.+...+......|.+
T Consensus 82 --GaD~vi~v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d~d~----~~v~p~lA~~L~~~~v 147 (255)
T 1efv_B 82 --GADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDC----NQTGQMTAGFLDWPQG 147 (255)
T ss_dssp --TCSEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCC----CCHHHHHHHHHTCCEE
T ss_pred --CCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccCCch----hhHHHHHHHHhCCCcc
Confidence 443222222 12 23456777888888999999987643322 2333445545555443
No 42
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=92.73 E-value=0.27 Score=33.75 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHHHH---hCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEAVE---AMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~---~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
...+.+...+++.|++++..+..- ...+.+.++++ +.+++.+|.+......+... +.-.+++||+-||
T Consensus 27 ~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP 98 (183)
T 1o4v_A 27 PVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGM--------VASITHLPVIGVP 98 (183)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--------HHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHH--------HHhccCCCEEEee
Confidence 444555666778899999888663 55555666655 46689888887766555543 5557899999999
Q ss_pred CCC
Q 041485 172 DPS 174 (179)
Q Consensus 172 ~~~ 174 (179)
...
T Consensus 99 ~~~ 101 (183)
T 1o4v_A 99 VKT 101 (183)
T ss_dssp ECC
T ss_pred CCC
Confidence 755
No 43
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=92.58 E-value=0.36 Score=35.13 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=24.0
Q ss_pred CCccHHHHHHHHHHHhcCCCC--EEEEEEEeCC
Q 041485 27 FSKGSKLALKWAIDNLLEKGD--TLYIIHIKLP 57 (179)
Q Consensus 27 ~s~~s~~al~~a~~la~~~~~--~l~ll~v~~~ 57 (179)
.++.+..|++.|.++... +. +++++.+-.+
T Consensus 35 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~ 66 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVK 66 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESG
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCCh
Confidence 456788999999999876 66 8999888653
No 44
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=92.42 E-value=0.64 Score=31.90 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHHHH---hCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEAVE---AMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~---~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
...+.+...+++.|++++..+..- ...+.+.++++ +.+++.+|.+.....++... +.-.+++||+-||
T Consensus 35 ~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP 106 (182)
T 1u11_A 35 ETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGM--------CAAWTRLPVLGVP 106 (182)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--------HHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHH--------HHhccCCCEEEee
Confidence 444455666778899998887663 55666667765 45688888887766665543 5567899999999
Q ss_pred CCC
Q 041485 172 DPS 174 (179)
Q Consensus 172 ~~~ 174 (179)
...
T Consensus 107 ~~~ 109 (182)
T 1u11_A 107 VES 109 (182)
T ss_dssp ECC
T ss_pred CCC
Confidence 754
No 45
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=92.31 E-value=0.28 Score=36.00 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=51.8
Q ss_pred eecCCccHHHHHHHHHHHhcCCCC--EEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHHHHH
Q 041485 24 ALDFSKGSKLALKWAIDNLLEKGD--TLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVLDML 101 (179)
Q Consensus 24 ~vd~s~~s~~al~~a~~la~~~~~--~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (179)
....++.+..|++.|.++....+. +++++.+-.+.. ++.++.+
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~~-----------------------------------~~~lr~a 76 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDRV-----------------------------------DESLRKC 76 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGGG-----------------------------------HHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchhH-----------------------------------HHHHHHH
Confidence 334567789999999999876666 899888854310 2222222
Q ss_pred HHHhhcCCceEEEEEec----c----ChhHHHHHHHHhCCCCEEEEecCCCc
Q 041485 102 DAASKQKHVSVVAKLYW----G----DARDKLCEAVEAMKLDSLVMGSRGLG 145 (179)
Q Consensus 102 ~~~~~~~~~~~~~~~~~----g----~~~~~i~~~a~~~~~dlvVlg~~~~~ 145 (179)
. ..|.+--+++.. + ..+..|...+++.++|+|++|.....
T Consensus 77 l----a~GaD~vi~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 124 (264)
T 1o97_C 77 L----AKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSD 124 (264)
T ss_dssp H----HTTCSEEEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTT
T ss_pred H----hcCCCEEEEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 1 225443333321 1 23457777888888999999987543
No 46
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=92.25 E-value=0.74 Score=32.63 Aligned_cols=40 Identities=13% Similarity=-0.132 Sum_probs=33.3
Q ss_pred CCeEEEeecC-----CccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 18 NRSIGVALDF-----SKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 18 ~~~ILv~vd~-----s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
|+.|||.++- .+.+..++..|.+++...+.+++++.+-..
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~ 47 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTG 47 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESC
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence 6779999874 456899999999999888889999888654
No 47
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=91.56 E-value=1.5 Score=30.98 Aligned_cols=89 Identities=9% Similarity=0.004 Sum_probs=52.1
Q ss_pred hhcCCCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhh
Q 041485 13 KMASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVD 92 (179)
Q Consensus 13 ~m~~~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (179)
+|.. +++|.|-+.++.....++=.++. ....+.++.+ |.......
T Consensus 4 ~~~~-~~ri~vl~SG~gsnl~all~~~~-~~~~~~~I~~--Vis~~~~a------------------------------- 48 (215)
T 3kcq_A 4 SMKK-ELRVGVLISGRGSNLEALAKAFS-TEESSVVISC--VISNNAEA------------------------------- 48 (215)
T ss_dssp ---C-CEEEEEEESSCCHHHHHHHHHTC-CC-CSEEEEE--EEESCTTC-------------------------------
T ss_pred CCCC-CCEEEEEEECCcHHHHHHHHHHH-cCCCCcEEEE--EEeCCcch-------------------------------
Confidence 4544 67999999999888776655542 1112344444 44332100
Q ss_pred hhHHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCC
Q 041485 93 LDQDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
. ..+.+++.|+++...-...-...++.+..++.++|++|+....
T Consensus 49 --~-----~l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 49 --R-----GLLIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp --T-----HHHHHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCC
T ss_pred --H-----HHHHHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCc
Confidence 0 0245667788765422222123788899999999999998664
No 48
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=91.13 E-value=3 Score=29.51 Aligned_cols=88 Identities=10% Similarity=-0.053 Sum_probs=53.9
Q ss_pred hcCCCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhh
Q 041485 14 MASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDL 93 (179)
Q Consensus 14 m~~~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (179)
|+.+.++|.|-++++.....++-.+.+-- .+.++.+|....+..
T Consensus 1 ~~~~~~riavl~SG~Gsnl~all~~~~~~--~~~eI~~Vis~~~~a---------------------------------- 44 (215)
T 3tqr_A 1 MNREPLPIVVLISGNGTNLQAIIGAIQKG--LAIEIRAVISNRADA---------------------------------- 44 (215)
T ss_dssp ---CCEEEEEEESSCCHHHHHHHHHHHTT--CSEEEEEEEESCTTC----------------------------------
T ss_pred CCCCCcEEEEEEeCCcHHHHHHHHHHHcC--CCCEEEEEEeCCcch----------------------------------
Confidence 44446789999999988888877766532 344554443322211
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEec--cC---hhHHHHHHHHhCCCCEEEEecCC
Q 041485 94 DQDVLDMLDAASKQKHVSVVAKLYW--GD---ARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~--g~---~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
. ..+.+++.|+++...-.. .+ ...++.+..++.++|++|+....
T Consensus 45 -~-----~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 45 -Y-----GLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp -H-----HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCC
T ss_pred -H-----HHHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccch
Confidence 0 024566778876542211 11 24678899999999999998654
No 49
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=90.86 E-value=2 Score=34.53 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=73.3
Q ss_pred ccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHHHHHHHHhhcC
Q 041485 29 KGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVLDMLDAASKQK 108 (179)
Q Consensus 29 ~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (179)
-....||..|++.|...+.+|..|++.++..... .. .........+.+..+.+.+++.
T Consensus 50 l~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~----------------~~------~~~r~~FL~~sL~dL~~~L~~l 107 (506)
T 3umv_A 50 LADNWALLHAAGLAAASASPLAVAFALFPRPFLL----------------SA------RRRQLGFLLRGLRRLAADAAAR 107 (506)
T ss_dssp STTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGG----------------GC------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcHHHHHHHHhhhhcCCCEEEEEeccchhhcc----------------CC------CHHHHHHHHHHHHHHHHHHHHc
Confidence 3456789999988877788899999988752100 00 0112234456677777777777
Q ss_pred CceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccc-cccchhHHHhh--cCCCCEEEEcC
Q 041485 109 HVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRV-LLGSVSNHVLA--NASCPVTIVKD 172 (179)
Q Consensus 109 ~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~-~~gs~~~~il~--~~~~pVlvv~~ 172 (179)
|+..- +..|++.+. .+.+++.+++.|+.... +.... -......+.+. ...|++..+..
T Consensus 108 G~~L~--v~~G~p~~v-~~L~~~~~a~~V~~d~e---p~~~~r~rD~~V~~~l~~~~~gi~~~~~~~ 168 (506)
T 3umv_A 108 HLPFF--LFTGGPAEI-PALVQRLGASTLVADFS---PLRPVREALDAVVGDLRREAPGVAVHQVDA 168 (506)
T ss_dssp TCCEE--EESSCTTHH-HHHHHHTTCSEEEECCC---CCHHHHHHHHHHHHHHHHHCTTSEEEEECC
T ss_pred CCceE--EEecChHHH-HHHHHhcCCCEEEeccC---hhHHHHHHHHHHHHHHhhccCCeEEEEeCC
Confidence 87654 557999999 99999999999997322 22210 01122233333 56788877653
No 50
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=90.66 E-value=3.3 Score=29.21 Aligned_cols=85 Identities=9% Similarity=0.005 Sum_probs=54.7
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHH
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDV 97 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (179)
|++|.|-++++.....++-.+.+- ...++++.+|....+..
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~-~~l~~eI~~Visn~~~a-------------------------------------- 42 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKA-GQLPCEVALLITDKPGA-------------------------------------- 42 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHT-TCCSSEEEEEEESCSSS--------------------------------------
T ss_pred CCEEEEEEeCCchHHHHHHHHHHc-CCCCcEEEEEEECCCCc--------------------------------------
Confidence 578999999998888887777652 23456666554422210
Q ss_pred HHHHHHHhhcCCceEEEEEec--cCh---hHHHHHHHHhCCCCEEEEecCC
Q 041485 98 LDMLDAASKQKHVSVVAKLYW--GDA---RDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--g~~---~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
...+.+++.|+++...-.. .+. ..++.+..++.++|++|+....
T Consensus 43 --~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 43 --KVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp --HHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred --HHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCch
Confidence 2345667778876542211 121 4678899999999999998664
No 51
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=89.30 E-value=0.85 Score=33.79 Aligned_cols=103 Identities=10% Similarity=0.056 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHHHHHHHHhhcCCce
Q 041485 32 KLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVLDMLDAASKQKHVS 111 (179)
Q Consensus 32 ~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (179)
.-++-.|..+....++++.++.+..... ..+.+++.++.+.+.++- +..
T Consensus 179 ~LmlllAylL~~nW~A~I~L~~vV~de~------------------------------a~~~a~~~l~~Lv~~~Ri-~a~ 227 (294)
T 3g40_A 179 DLALLIAYKLKSNWKASLSFMTFAPTAI------------------------------QAQAAENFLQSLAELARI-PNV 227 (294)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECSSHH------------------------------HHHHHHHHHHHHHHHHTC-CSC
T ss_pred hHHHHHHHHHhhCcCCeEEEEEecCCHH------------------------------HHHHHHHHHHHHHHHhcC-Cce
Confidence 3345555555555699999999876631 122334555555555543 222
Q ss_pred EEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCCCCC
Q 041485 112 VVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDPSAA 176 (179)
Q Consensus 112 ~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~~ 176 (179)
..+ + . .+..+|+..+ -++||+++|-.....+. ...+++..+.-.++.+.+.+..
T Consensus 228 ~~v-v-~-~~F~~il~~s--~~ADL~flGl~~~~df~------~~~~~~~~~~ssc~f~~dsg~e 281 (294)
T 3g40_A 228 KMQ-V-L-RENPIKSSKL--PFASLHIFSLDPNPDLD------LARHLMEKAGSSCIFALDSGEE 281 (294)
T ss_dssp EEE-E-E-SSCTTTSSSC--CCCSEEEEECCSSCCHH------HHHHHHHHHTSEEEEEECCSCC
T ss_pred EEE-e-c-CchHHHHhhC--cCCCEEEEcCCCCCcHH------HHHHHHHhcCCeEEEEecCchh
Confidence 222 2 3 5556666555 44999999986554433 3477888888888998876644
No 52
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=88.36 E-value=2.5 Score=34.07 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCCCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCC
Q 041485 5 LNKLIFFFKMASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQ 58 (179)
Q Consensus 5 ~~~~~~~~~m~~~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 58 (179)
++.++......-..++++|++++...|.-++..+.+. .+.+++.+|+....
T Consensus 217 ~~~~i~~i~~~v~~~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd~g~ 267 (527)
T 3tqi_A 217 IEDSIRDIQEKVGKEQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVDTGL 267 (527)
T ss_dssp HHHHHHHHHHHHTTSCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEECCSC
T ss_pred HHHHHHHHHHhcCCCeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEeccCC
Confidence 3334444333322488999999999998877776654 35679999986543
No 53
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=87.86 E-value=2.4 Score=34.38 Aligned_cols=130 Identities=9% Similarity=0.006 Sum_probs=81.6
Q ss_pred CeEEEee--cCCccHHHHHHHHHHHhcC--CCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhh
Q 041485 19 RSIGVAL--DFSKGSKLALKWAIDNLLE--KGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLD 94 (179)
Q Consensus 19 ~~ILv~v--d~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (179)
..+|+=+ |.--....||..|++.+.. .+.++..|++.++..... .... .......
T Consensus 29 ~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~---------------~~~~------~~r~~Fl 87 (543)
T 2wq7_A 29 STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDW---------------MQVG------ANRWRFL 87 (543)
T ss_dssp EEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGC---------------TTSC------HHHHHHH
T ss_pred ceEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcc---------------cCCC------HHHHHHH
Confidence 3445555 4444566788888887754 567799999998753210 0000 1112233
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
-+.+..+.+.+++.|+.+. +..|++.+.|.+.+++.+++.|+....- .+... ....-..+.+....|++..+...
T Consensus 88 ~~sL~~L~~~L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~p~~~-~rd~~v~~~~~~~gi~~~~~~~~ 162 (543)
T 2wq7_A 88 QQTLEDLDNQLRKLNSRLF--VVRGKPAEVFPRIFKSWRVEMLTFETDI-EPYSV-TRDAAVQKLAKAEGVRVETHCSH 162 (543)
T ss_dssp HHHHHHHHHHHHHTTCCCE--EEESCHHHHHHHHHHHTTEEEEEEECCC-SHHHH-HHHHHHHHHHHHHTCEEEEECCS
T ss_pred HHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEecCc-CHHHH-HHHHHHHHHHHHcCCEEEEecCC
Confidence 4666677777777787655 4469999999999999999999987442 23321 12233355666667888777643
No 54
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=87.46 E-value=5.6 Score=27.68 Aligned_cols=36 Identities=8% Similarity=0.012 Sum_probs=29.4
Q ss_pred CeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCC
Q 041485 19 RSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQ 58 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 58 (179)
.+|+|++++...|..++..+.+.. .++.++|+....
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~ 80 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGY 80 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCC
Confidence 589999999999999888887764 457888887653
No 55
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=87.32 E-value=5.2 Score=28.96 Aligned_cols=40 Identities=5% Similarity=-0.130 Sum_probs=32.5
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQ 58 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 58 (179)
+.+++|++++...|...+..+.++... +.++.++|+....
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~ 80 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLH 80 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCC
Confidence 468999999999999999998887654 5678888886554
No 56
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=87.07 E-value=5.5 Score=31.52 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=31.1
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQ 58 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 58 (179)
.++|+|++++...|..++.++.+ .+..+..+++....
T Consensus 10 ~~KVvVA~SGGlDSSvll~~L~e----~G~eViavtvd~Gq 46 (455)
T 1k92_A 10 GQRIGIAFSGGLDTSAALLWMRQ----KGAVPYAYTANLGQ 46 (455)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECCC
T ss_pred CCeEEEEEcChHHHHHHHHHHHH----cCCEEEEEEEEcCC
Confidence 57999999999999998888866 27889999987653
No 57
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=86.47 E-value=6.3 Score=30.36 Aligned_cols=41 Identities=12% Similarity=0.051 Sum_probs=28.5
Q ss_pred hhcCCCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 13 KMASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 13 ~m~~~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
+|....++|+|++++...|..++..+.+ .+.++..+|+...
T Consensus 12 ~~~~~~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~ 52 (380)
T 2der_A 12 SMSETAKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMKNW 52 (380)
T ss_dssp -----CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEECC
T ss_pred CCCCCCCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEEcC
Confidence 4665578999999999888877666554 4788999988653
No 58
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=85.66 E-value=6.7 Score=29.20 Aligned_cols=91 Identities=14% Similarity=0.151 Sum_probs=59.2
Q ss_pred CeEEEeecCCccHHHHHHHHHHHhcC------------------CCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhh
Q 041485 19 RSIGVALDFSKGSKLALKWAIDNLLE------------------KGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEF 80 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~la~~------------------~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
.+|+|++++...|...+..+.+.... .+.++.++|+.....+
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~f-------------------- 113 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETF-------------------- 113 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCC--------------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCC--------------------
Confidence 47999999999999888888775321 1456888888655321
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhhcCCceEEEEEec----cChhHHHHHHHHhC-CCCEEEEecCC
Q 041485 81 RDQEVMKQYEVDLDQDVLDMLDAASKQKHVSVVAKLYW----GDARDKLCEAVEAM-KLDSLVMGSRG 143 (179)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~i~~~a~~~-~~dlvVlg~~~ 143 (179)
.+..+.+.+.++..++++.+.... ....+.+.++++.. ..+.+++|.+.
T Consensus 114 --------------pet~~fv~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rr 167 (306)
T 2wsi_A 114 --------------PTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRH 167 (306)
T ss_dssp --------------HHHHHHHHHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCC
T ss_pred --------------HHHHHHHHHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEec
Confidence 244445555566678776542211 23455666777663 57899999764
No 59
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=85.57 E-value=1.6 Score=34.12 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHH---HHhCCC-CEEEEecCCCcccccccccchhHHHhhcCCCCEEEE
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEA---VEAMKL-DSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIV 170 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~---a~~~~~-dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 170 (179)
...+.+...++..|++++..+..- ...+.+.++ ++..++ +.+|.+.....++... +...+++||+-|
T Consensus 279 ~~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgv--------va~~t~~PVIgv 350 (425)
T 2h31_A 279 GHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPV--------MSGNTAYPVISC 350 (425)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHH--------HHHHCSSCEEEC
T ss_pred HHHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhH--------HhccCCCCEEEe
Confidence 445566677778899988877653 334444444 556677 5777776655555433 555789999999
Q ss_pred cCC
Q 041485 171 KDP 173 (179)
Q Consensus 171 ~~~ 173 (179)
|..
T Consensus 351 P~~ 353 (425)
T 2h31_A 351 PPL 353 (425)
T ss_dssp CCC
T ss_pred eCc
Confidence 974
No 60
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=85.49 E-value=9.5 Score=28.41 Aligned_cols=84 Identities=8% Similarity=-0.033 Sum_probs=54.2
Q ss_pred CCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHH
Q 041485 17 NNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQD 96 (179)
Q Consensus 17 ~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (179)
.+++|.|.++++..+..++=.+.+- ...++++.+|-.-.+.
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~I~~Visn~~~-------------------------------------- 144 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWHS-DELDCDIACVISNHQD-------------------------------------- 144 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHT-TCSCSEEEEEEESSST--------------------------------------
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHC-CCCCcEEEEEEECcHH--------------------------------------
Confidence 4679999999988887777666542 2345666555443321
Q ss_pred HHHHHHHHhhcCCceEEEEEec--cC--hhHHHHHHHHhCCCCEEEEecCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYW--GD--ARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~--g~--~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
+..++++.|+++...... .. ....+.+..++.++|++|+....
T Consensus 145 ----~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 145 ----LRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp ----THHHHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred ----HHHHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 112356778876553211 11 23678899999999999998764
No 61
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=85.46 E-value=7.6 Score=27.26 Aligned_cols=88 Identities=10% Similarity=0.035 Sum_probs=53.2
Q ss_pred hhcCCCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhh
Q 041485 13 KMASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVD 92 (179)
Q Consensus 13 ~m~~~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (179)
+|. .++|.|.+.++.....++=.++. ....+.++.+|....+..
T Consensus 4 ~m~--~~ri~vl~SG~gsnl~all~~~~-~~~l~~~I~~Visn~~~a--------------------------------- 47 (209)
T 4ds3_A 4 SMK--RNRVVIFISGGGSNMEALIRAAQ-APGFPAEIVAVFSDKAEA--------------------------------- 47 (209)
T ss_dssp --C--CEEEEEEESSCCHHHHHHHHHHT-STTCSEEEEEEEESCTTC---------------------------------
T ss_pred cCC--CccEEEEEECCcHHHHHHHHHHH-cCCCCcEEEEEEECCccc---------------------------------
Confidence 355 47899999999888777666653 112234554444322211
Q ss_pred hhHHHHHHHHHHhhcCCceEEEEEec--cC---hhHHHHHHHHhCCCCEEEEecCC
Q 041485 93 LDQDVLDMLDAASKQKHVSVVAKLYW--GD---ARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~--g~---~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
.. .+.+++.|+++...... .+ ...++.+..++.++|++|+....
T Consensus 48 --~~-----l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 48 --GG-----LAKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp --TH-----HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred --HH-----HHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 00 24566778876643221 12 23688899999999999998664
No 62
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=84.89 E-value=10 Score=28.14 Aligned_cols=84 Identities=7% Similarity=-0.058 Sum_probs=54.7
Q ss_pred CCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHH
Q 041485 17 NNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQD 96 (179)
Q Consensus 17 ~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (179)
.+++|.|.++++..+..++=.+.+- ...++++.+|-.-.+..
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Visn~~~~------------------------------------- 135 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKM-GELKMDIVGIVSNHPDF------------------------------------- 135 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEEEEESSSTT-------------------------------------
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHc-CCCCcEEEEEEeCcHHH-------------------------------------
Confidence 4679999999998888887776653 23456665554433220
Q ss_pred HHHHHHHHhhcCCceEEEEEec-cC---hhHHHHHHHHhCCCCEEEEecCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYW-GD---ARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-g~---~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
..++++.|+++...... .+ ....+.+..++.++|++|+..+.
T Consensus 136 -----~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 136 -----APLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp -----HHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred -----HHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 12356778876643211 11 23578889999999999998764
No 63
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=84.43 E-value=14 Score=29.50 Aligned_cols=36 Identities=8% Similarity=-0.023 Sum_probs=29.7
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
.++++|++++...|..++..+.+. +.+++.+|+...
T Consensus 209 ~~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~g 244 (503)
T 2ywb_A 209 KDRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDHG 244 (503)
T ss_dssp TSEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEECS
T ss_pred CccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeCC
Confidence 478999999999998888777664 688999998654
No 64
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=84.17 E-value=8.8 Score=29.46 Aligned_cols=36 Identities=14% Similarity=0.045 Sum_probs=28.7
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
.++|+|++++...|..++..+.+ .+.++..+|+...
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~ 44 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKE----QGYDVIGIFMKNW 44 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECC
T ss_pred CCeEEEEEeCHHHHHHHHHHHHH----cCCcEEEEEEECC
Confidence 46899999999999877776655 3788999988654
No 65
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=83.65 E-value=11 Score=27.76 Aligned_cols=84 Identities=8% Similarity=0.063 Sum_probs=53.6
Q ss_pred CCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHH
Q 041485 17 NNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQD 96 (179)
Q Consensus 17 ~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (179)
..++|.|.++++..+..++=.+.+- ...++++.+|-.-.+.
T Consensus 89 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Visn~~~-------------------------------------- 129 (286)
T 3n0v_A 89 HRPKVVIMVSKADHCLNDLLYRQRI-GQLGMDVVAVVSNHPD-------------------------------------- 129 (286)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHT-TSSCCEEEEEEESSST--------------------------------------
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHC-CCCCcEEEEEEeCcHH--------------------------------------
Confidence 3678999999988888777766552 2345666555443321
Q ss_pred HHHHHHHHhhcCCceEEEEEec-cC---hhHHHHHHHHhCCCCEEEEecCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYW-GD---ARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-g~---~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
+..++++.|+++...... .+ ....+.+..++.++|++|+..+.
T Consensus 130 ----~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 130 ----LEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp ----THHHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ----HHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 012356778876643211 11 23578889999999999998664
No 66
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=83.15 E-value=9.9 Score=26.78 Aligned_cols=83 Identities=11% Similarity=-0.098 Sum_probs=51.7
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHH
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDV 97 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (179)
+.+|.|.++++.....++=.+.. ...++++.+| ...+..
T Consensus 12 ~~ri~vl~SG~gsnl~all~~~~--~~~~~eI~~V--is~~~a------------------------------------- 50 (215)
T 3da8_A 12 PARLVVLASGTGSLLRSLLDAAV--GDYPARVVAV--GVDREC------------------------------------- 50 (215)
T ss_dssp SEEEEEEESSCCHHHHHHHHHSS--TTCSEEEEEE--EESSCC-------------------------------------
T ss_pred CcEEEEEEeCChHHHHHHHHHHh--ccCCCeEEEE--EeCCch-------------------------------------
Confidence 56899999999888777665542 1234455444 333210
Q ss_pred HHHHHHHhhcCCceEEEEEec--cC---hhHHHHHHHHhCCCCEEEEecCC
Q 041485 98 LDMLDAASKQKHVSVVAKLYW--GD---ARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--g~---~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
...+.+++.|+++...-.. .+ ...++.+..++.++|++|+....
T Consensus 51 --~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 51 --RAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp --HHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred --HHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 0134566778876543211 11 14678888999999999998764
No 67
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=83.01 E-value=6.3 Score=30.76 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=30.0
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQ 58 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 58 (179)
.++|+|++++...|..++.++.+. +.++..+|+....
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g~ 41 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIGQ 41 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESSC
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECCc
Confidence 478999999999999888887663 6788888886653
No 68
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=81.79 E-value=10 Score=26.09 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=29.1
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQ 58 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 58 (179)
.++++|.+++...|..++..+.+. +.++..+|+....
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~~~ 39 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHYNQ 39 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESSC
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeCCC
Confidence 478999999999998888777664 3678888887653
No 69
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=81.41 E-value=2 Score=34.73 Aligned_cols=120 Identities=11% Similarity=0.052 Sum_probs=73.8
Q ss_pred cCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHHHHHHHHh
Q 041485 26 DFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVLDMLDAAS 105 (179)
Q Consensus 26 d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (179)
|.--....||..|++.+. .+.+|..|++.++..... ... .........+.+..+.+.+
T Consensus 13 DLRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~---------------~~~------~~~r~~Fl~~sL~~L~~~L 70 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD-QGIALIPVFIFDGESAGT---------------KNV------GYNRMRFLLDSLQDIDDQL 70 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCS---------------TTC------CHHHHHHHHHHHHHHHHHG
T ss_pred CcchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhcc---------------CCC------CHHHHHHHHHHHHHHHHHH
Confidence 444445567777776553 455899999998753210 000 0112233456777777778
Q ss_pred hcC---CceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 106 KQK---HVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 106 ~~~---~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
++. |+..- +..|++.+.|.+.+++.+++.|+.... ..+... -......+.+....|++..+.
T Consensus 71 ~~~~~~G~~L~--v~~G~~~~vl~~L~~~~~a~~V~~n~~-~~~~~~-~RD~~v~~~l~~~gi~~~~~~ 135 (538)
T 3tvs_A 71 QAATDGRGRLL--VFEGEPAYIFRRLHEQVRLHRICIEQD-CEPIWN-ERDESIRSLCRELNIDFVEKV 135 (538)
T ss_dssp GGSCSSSSCCE--EEESCHHHHHHHHHHHHCEEEECEECC-CCGGGH-HHHHHHHHHHHHSSCCCCEEC
T ss_pred HHhhcCCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEccC-CCHHHH-HHHHHHHHHHHhCCceEEEec
Confidence 777 76654 456999999999999999999987543 223221 112233455666677766554
No 70
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=80.32 E-value=10 Score=30.20 Aligned_cols=131 Identities=8% Similarity=0.013 Sum_probs=76.2
Q ss_pred CeEEEee--cCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHH
Q 041485 19 RSIGVAL--DFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQD 96 (179)
Q Consensus 19 ~~ILv~v--d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (179)
+.+|+=+ |.--....||..|++ .+.++..|++.++...... ..+.. ... .......-+
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~-----~~~~~-----~~~------~~r~~Fl~~ 65 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQT-----HQGFA-----KTG------PWRSNFLQQ 65 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBC-----TTSCB-----SSC------HHHHHHHHH
T ss_pred CcEEEEeCCCCCcchHHHHHHHHh----cCCCEEEEEEECchhhccc-----ccccC-----CCC------HHHHHHHHH
Confidence 4455555 444445667777765 3457889999887532100 00000 000 011123346
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
.+..+.+.+++.|+.+. +..|++.+.|.+.+++.+++.|+...... +.... .-....+.+....|++..+...
T Consensus 66 sL~~L~~~L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~V~~~~~~~-~~~~~-rd~~v~~~l~~~gi~~~~~~~~ 138 (489)
T 1np7_A 66 SVQNLAESLQKVGNKLL--VTTGLPEQVIPQIAKQINAKTIYYHREVT-QEELD-VERNLVKQLTILGIEAKGYWGS 138 (489)
T ss_dssp HHHHHHHHHHHTTCCEE--EEESCHHHHHHHHHHHTTEEEEEEECCCS-HHHHH-HHHHHHHHHHHHTCEEEEECCS
T ss_pred HHHHHHHHHHHCCCcEE--EEECCHHHHHHHHHHHcCCCEEEEecccC-HHHHH-HHHHHHHHHHhcCCeEEEecCC
Confidence 66677777777787765 45699999999999999999999875432 22221 1223344555567888776543
No 71
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=80.23 E-value=5.6 Score=24.27 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=35.6
Q ss_pred ChhHHHHHHHHhCCCCEEEEecCC-----CcccccccccchhHHHhhcCCCCEEEEcCCCC
Q 041485 120 DARDKLCEAVEAMKLDSLVMGSRG-----LGTIQRVLLGSVSNHVLANASCPVTIVKDPSA 175 (179)
Q Consensus 120 ~~~~~i~~~a~~~~~dlvVlg~~~-----~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~ 175 (179)
.....|.+++++.+++.+|+|-.- .+...+ ..-..+.++-.. ++||..+.+..+
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~-~~~~f~~~L~~~-~lpV~~~DERlT 96 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAG-KVLPLVEALRAR-GVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSS-TTHHHHHHHHHT-TCEEEEECCSCC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHH-HHHHHHHHHhcC-CCCEEEECCCCC
Confidence 446788889999999999999431 111111 112345666666 899999876543
No 72
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=80.08 E-value=1.6 Score=27.27 Aligned_cols=63 Identities=8% Similarity=0.153 Sum_probs=37.1
Q ss_pred HHHHHHHhhcCCceEEEEEe-ccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 98 LDMLDAASKQKHVSVVAKLY-WGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
...+.+.+++.|++++..-. .+... ++..+ +|++++|.+-+..... .........+||.+++.
T Consensus 23 v~km~~~a~~~gi~v~i~a~~~~~~~----~~~~~--~DvvLLgPQV~y~~~~------ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 23 ANAINEGANLTEVRVIANSGAYGAHY----DIMGV--YDLIILAPQVRSYYRE------MKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHHHHHHHHTCSEEEEEEETTSCT----TTGGG--CSEEEECGGGGGGHHH------HHHHHTTTTCEEEECCH
T ss_pred HHHHHHHHHHCCCceEEEEcchHHHH----hhccC--CCEEEEChHHHHHHHH------HHHHhhhcCCcEEEeCH
Confidence 34445555666777766432 23322 22334 8999999764433332 24556667899999874
No 73
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=79.98 E-value=4 Score=28.69 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=31.4
Q ss_pred hcCCCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEE
Q 041485 14 MASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHI 54 (179)
Q Consensus 14 m~~~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v 54 (179)
|.. .|+|++++.++..+.++++....+.+. +.+++++--
T Consensus 1 m~~-~k~IllgvTGaiaa~k~~~ll~~L~~~-g~eV~vv~T 39 (209)
T 3zqu_A 1 MSG-PERITLAMTGASGAQYGLRLLDCLVQE-EREVHFLIS 39 (209)
T ss_dssp CCS-CSEEEEEECSSSCHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CCC-CCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEEC
Confidence 444 689999999999999999888887654 788777654
No 74
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=79.06 E-value=7.5 Score=30.31 Aligned_cols=109 Identities=15% Similarity=0.091 Sum_probs=66.6
Q ss_pred ccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHHHHHHHHhhcC
Q 041485 29 KGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVLDMLDAASKQK 108 (179)
Q Consensus 29 ~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (179)
-....||..|.+. + ++..|++.++... . . ........-+.+..+.+.+++.
T Consensus 14 l~Dn~aL~~A~~~----~-~v~~vfi~d~~~~-------~----------~-------~~~r~~fl~~sL~~l~~~L~~~ 64 (420)
T 2j07_A 14 LHDHPALLEALAR----G-PVVGLVVLDPNNL-------K----------T-------TPRRRAWFLENVRALREAYRAR 64 (420)
T ss_dssp STTCHHHHHHHTT----S-CEEEEEEECHHHH-------S----------S-------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHhC----C-CEEEEEEECCccc-------c----------C-------CHHHHHHHHHHHHHHHHHHHHC
Confidence 3445667766652 2 7888888876410 0 0 0111223346666777777777
Q ss_pred CceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 109 HVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 109 ~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
|+.+. +..|++.+.|.+.+++.+++.|+....- .+.....- ..|-..+.|++..+...
T Consensus 65 g~~l~--~~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~rd----~~v~~~l~i~~~~~~~~ 122 (420)
T 2j07_A 65 GGALW--VLEGLPWEKVPEAARRLKAKAVYALTSH-TPYGRYRD----GRVREALPVPLHLLPAP 122 (420)
T ss_dssp TCCEE--EEESCHHHHHHHHHHHTTCSEEEEECCC-SHHHHHHH----HHHHHHCSSCEEEECCC
T ss_pred CCeEE--EEeCCHHHHHHHHHHHcCCCEEEEeccc-ChhHHHHH----HHHHHHcCCeEEEeCCC
Confidence 87765 4569999999999999999999996543 22222211 22322237888777543
No 75
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=77.46 E-value=23 Score=27.48 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=28.7
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKL 56 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 56 (179)
.++++|++++...|..++..+.+ .+.++..+|+..
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~ 221 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHS 221 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEEC
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeC
Confidence 47899999999999988777665 478899999865
No 76
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=77.22 E-value=16 Score=25.53 Aligned_cols=84 Identities=7% Similarity=-0.054 Sum_probs=51.9
Q ss_pred CeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHH
Q 041485 19 RSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVL 98 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (179)
++|.|-++++..+..++-.+++ ....+.++.+|....+.. .
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~-~~~~~~~I~~Vvs~~~~~-----------------------------------~--- 41 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTR-EPNSSAQIDIVISNKAAV-----------------------------------A--- 41 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHH-STTCSCEEEEEEESSTTC-----------------------------------H---
T ss_pred CeEEEEEECCchHHHHHHHHHh-cCCCCcEEEEEEeCCCCh-----------------------------------H---
Confidence 4788999998888887765544 222355655554433321 0
Q ss_pred HHHHHHhhcCCceEEEEEec--cC---hhHHHHHHHHhCCCCEEEEecCC
Q 041485 99 DMLDAASKQKHVSVVAKLYW--GD---ARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~--g~---~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
..+.+++.|+++...-.. .+ ....+.+..++.++|++|+....
T Consensus 42 --~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 89 (209)
T 1meo_A 42 --GLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFM 89 (209)
T ss_dssp --HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred --HHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchh
Confidence 124566778876542211 12 13578888999999999998664
No 77
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=76.10 E-value=17 Score=25.42 Aligned_cols=42 Identities=7% Similarity=0.031 Sum_probs=27.2
Q ss_pred HHHhhcCCceEEEEEecc--C---hhHHHHHHHHhCCCCEEEEecCC
Q 041485 102 DAASKQKHVSVVAKLYWG--D---ARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 102 ~~~~~~~~~~~~~~~~~g--~---~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
.+.+++.|+++...-... + ...++.+..++.++|++|+....
T Consensus 44 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 90 (216)
T 2ywr_A 44 IERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFM 90 (216)
T ss_dssp HHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCCEEEEeCch
Confidence 345566687765421111 1 13678888999999999998654
No 78
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=75.45 E-value=18 Score=25.30 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=28.8
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
+++++|.+++...|..++..+.+. +.++..+|+...
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~----~~~v~av~~~~g 37 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQD----YDDVHCITFDYG 37 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCCEEEEecCcHHHHHHHHHHHHc----CCCEEEEEEECC
Confidence 578999999999999888877664 257888888655
No 79
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=75.00 E-value=5.1 Score=31.92 Aligned_cols=118 Identities=15% Similarity=0.107 Sum_probs=71.1
Q ss_pred cCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHHHHHHHHh
Q 041485 26 DFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVLDMLDAAS 105 (179)
Q Consensus 26 d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (179)
|.--....||..|.+.+ .++..|++.++.... .. .. ........-+.+..+.+.+
T Consensus 12 DLRl~Dn~aL~~A~~~~----~~v~~vfi~dp~~~~-------~~--------~~------~~~r~~fl~~sL~~L~~~L 66 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQS----AQLIGLFCLDPQILQ-------SA--------DM------APARVAYLQGCLQELQQRY 66 (484)
T ss_dssp CCCSSSCHHHHHHHHHC----SCEEEEEEECHHHHT-------CT--------TC------CHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHhcC----CCEEEEEEEcchhhc-------CC--------CC------CHHHHHHHHHHHHHHHHHH
Confidence 33334556777777642 368888888864210 00 00 0011223345566666667
Q ss_pred hcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 106 KQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 106 ~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
++.|+.+. +..|++.+.|.+.+++.+++.|+....- .+.... .-....+.+....|++..+..
T Consensus 67 ~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~p~~~~-rd~~v~~~l~~~gi~~~~~~~ 129 (484)
T 1owl_A 67 QQAGSRLL--LLQGDPQHLIPQLAQQLQAEAVYWNQDI-EPYGRD-RDGQVAAALKTAGIRAVQLWD 129 (484)
T ss_dssp HHHTSCEE--EEESCHHHHHHHHHHHTTCSEEEEECCC-SHHHHH-HHHHHHHHHHHTTCEEEEECC
T ss_pred HHCCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEeccC-ChhHHH-HHHHHHHHHHHcCcEEEEecC
Confidence 77787665 4469999999999999999999996543 232222 223334556666788877754
No 80
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=74.82 E-value=20 Score=25.58 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=28.0
Q ss_pred CeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 19 RSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
.+|+|++++...|..++..+.+.. ..+.++|+...
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~idtg 80 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTG 80 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEECCCS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEecCC
Confidence 589999999999999888888765 35677777554
No 81
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=74.81 E-value=6.4 Score=27.13 Aligned_cols=35 Identities=9% Similarity=-0.029 Sum_probs=28.6
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEE
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIH 53 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~ 53 (179)
|++|++++.++..+.++++....+.+. +.+++++-
T Consensus 1 mk~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~ 35 (189)
T 2ejb_A 1 MQKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVI 35 (189)
T ss_dssp CCEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 378999999999999998888887654 77777665
No 82
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=74.32 E-value=14 Score=25.44 Aligned_cols=37 Identities=19% Similarity=0.079 Sum_probs=28.9
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQ 58 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 58 (179)
+++++|++++...|..++..+.+ .+.++..+|+....
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~~ 42 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFGV 42 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECSS
T ss_pred CCeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCCC
Confidence 67999999999999887765543 46788888886653
No 83
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=74.12 E-value=7.7 Score=28.67 Aligned_cols=85 Identities=7% Similarity=-0.051 Sum_probs=50.6
Q ss_pred CCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHH
Q 041485 17 NNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQD 96 (179)
Q Consensus 17 ~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (179)
.+++|.|-++++..+..++=.+.+- ...++++.++-.-.++.
T Consensus 88 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~i~~Visn~p~~------------------------------------- 129 (288)
T 3obi_A 88 TRRKVMLLVSQSDHCLADILYRWRV-GDLHMIPTAIVSNHPRE------------------------------------- 129 (288)
T ss_dssp SCEEEEEEECSCCHHHHHHHHHHHT-TSSCEEEEEEEESSCGG-------------------------------------
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHC-CCCCeEEEEEEcCCChh-------------------------------------
Confidence 4678999999998888887777652 22344554443322110
Q ss_pred HHHHHHHHhhcCCceEEEEEec-cC---hhHHHHHHHHhCCCCEEEEecCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYW-GD---ARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-g~---~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
+.+.+++.|+++...... .+ ....+.+..++.++|++|+....
T Consensus 130 ----~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagy~ 176 (288)
T 3obi_A 130 ----TFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYM 176 (288)
T ss_dssp ----GSCCTTTTTCCEEECCCCTTTHHHHHHHHHHHHHHHTCCEEEESSCC
T ss_pred ----HHHHHHHcCCCEEEeCCCcccHHHHHHHHHHHHHhcCCCEEEhhhhh
Confidence 012345667765542211 11 23467788888888998887653
No 84
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=74.03 E-value=7.2 Score=30.92 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHHHHHHHHhhcCCc
Q 041485 31 SKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVLDMLDAASKQKHV 110 (179)
Q Consensus 31 s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (179)
...||..|++. . ..+|..|++.++..... .. .........-+.+..+.+.+++.|+
T Consensus 15 DN~aL~~A~~~--~-~~~v~~vfi~dp~~~~~---------------~~------~~~~r~~fl~~sL~~L~~~L~~~G~ 70 (471)
T 1dnp_A 15 DNLALAAACRN--S-SARVLALYIATPRQWAT---------------HN------MSPRQAELINAQLNGLQIALAEKGI 70 (471)
T ss_dssp TCHHHHHHSSS--T-TSEEEEEEEECHHHHHH---------------TT------CCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHhC--C-CCCEEEEEEECchhhcc---------------CC------CCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 44566666552 1 23899999988742100 00 0011122334666677777777888
Q ss_pred eEEEEEe--ccChhHHHHHHHHhCCCCEEEEecC
Q 041485 111 SVVAKLY--WGDARDKLCEAVEAMKLDSLVMGSR 142 (179)
Q Consensus 111 ~~~~~~~--~g~~~~~i~~~a~~~~~dlvVlg~~ 142 (179)
.+.+... .|++.+.|.+.+++.+++.|+....
T Consensus 71 ~L~v~~~~~~g~~~~~l~~l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 71 PLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQ 104 (471)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred eEEEEEccCCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 7665422 5899999999999999999998654
No 85
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=73.81 E-value=23 Score=27.44 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=28.5
Q ss_pred CeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 19 RSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
++++|++++...|..++.++.+. ++..+..+|+...
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g~~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YRAEVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HTCEEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hCCcEEEEEEeCC
Confidence 47999999999999888887653 3678888888655
No 86
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=73.75 E-value=6.9 Score=28.97 Aligned_cols=106 Identities=8% Similarity=-0.082 Sum_probs=58.0
Q ss_pred CCeEEEeecCCcc---HHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhh
Q 041485 18 NRSIGVALDFSKG---SKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLD 94 (179)
Q Consensus 18 ~~~ILv~vd~s~~---s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (179)
.+--|+.+.+.+. ...++++.++++...+..+.++-..... .
T Consensus 25 ~~g~l~iiGGgedk~~~~~i~~~~v~lagg~~~~I~~IptAs~~-----------------------~------------ 69 (291)
T 3en0_A 25 SQPAILIIGGAEDKVHGREILQTFWSRSGGNDAIIGIIPSASRE-----------------------P------------ 69 (291)
T ss_dssp CSCCEEEECSSCCSSSCCHHHHHHHHHTTGGGCEEEEECTTCSS-----------------------H------------
T ss_pred CCceEEEEECCCCccChHHHHHHHHHHcCCCCCeEEEEeCCCCC-----------------------h------------
Confidence 4455566655442 4578999999997666666554221111 0
Q ss_pred HHHHHHHHHHhhcCCc-eEEEEEec---cChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHh
Q 041485 95 QDVLDMLDAASKQKHV-SVVAKLYW---GDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVL 160 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~-~~~~~~~~---g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il 160 (179)
....+.+.+.+++.|+ +++..... ....+.+.+..++ +|.|+++--....+.+.+.++-...++
T Consensus 70 ~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~--ad~I~v~GGnt~~l~~~l~~t~l~~~L 137 (291)
T 3en0_A 70 LLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQ--CTGIFMTGGDQLRLCGLLADTPLMDRI 137 (291)
T ss_dssp HHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHH--CSEEEECCSCHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhc--CCEEEECCCCHHHHHHHHHhCCHHHHH
Confidence 1122233445555576 55543321 2344667778887 999999865444444444444444444
No 87
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=73.46 E-value=25 Score=26.02 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=29.4
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQ 58 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 58 (179)
.++++|+++|...|..++..+.+. .+.++..+|+....
T Consensus 20 ~~kvlvalSGGvDSsvla~ll~~~---~g~~v~av~vd~g~ 57 (308)
T 2dpl_A 20 DSKAIIALSGGVDSSTAAVLAHKA---IGDRLHAVFVNTGF 57 (308)
T ss_dssp TSCEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECSC
T ss_pred CCCEEEEEeChHHHHHHHHHHHHh---hCCCEEEEEEcCCC
Confidence 378999999999998887777664 24678888886543
No 88
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=73.44 E-value=23 Score=25.58 Aligned_cols=75 Identities=12% Similarity=0.015 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhH--HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARD--KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.+.+.+.+.+.|.++.+....++... ..++.+...++|-||+.......... .-+.+....+||+++..
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~------~~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 18 QKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSN------VVKEAKQEGIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHH------HHHHHHTTTCEEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH------HHHHHHHCCCeEEEECC
Confidence 35666677777788888776555555543 45666777789999997654332221 12345677899999965
Q ss_pred CCC
Q 041485 173 PSA 175 (179)
Q Consensus 173 ~~~ 175 (179)
...
T Consensus 92 ~~~ 94 (313)
T 3m9w_A 92 MIN 94 (313)
T ss_dssp CCT
T ss_pred cCC
Confidence 443
No 89
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=73.17 E-value=16 Score=23.52 Aligned_cols=69 Identities=13% Similarity=-0.022 Sum_probs=43.8
Q ss_pred HHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcC--CCCEEEEc
Q 041485 100 MLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANA--SCPVTIVK 171 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~--~~pVlvv~ 171 (179)
.+...++..|.++...- ..-+.+.+++.+++.++|+|.++........ .+....+.+-... +++|++=.
T Consensus 22 ~v~~~l~~~G~~Vi~lG-~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 22 ILDHAFTNAGFNVVNIG-VLSPQELFIKAAIETKADAILVSSLYGQGEI--DCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp HHHHHHHHTTCEEEEEE-EEECHHHHHHHHHHHTCSEEEEEECSSTHHH--HHTTHHHHHHHTTCTTCEEEEEE
T ss_pred HHHHHHHHCCCEEEECC-CCCCHHHHHHHHHhcCCCEEEEEecCcCcHH--HHHHHHHHHHhcCCCCCEEEEEC
Confidence 45566677888766432 2478899999999999999999976533332 2334444443322 36665543
No 90
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=73.13 E-value=13 Score=22.46 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHh
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA 131 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~ 131 (179)
+..++.+....+..|+.+.+.....+..+.+...+++
T Consensus 87 qnrleefsrevrrrgfevrtvtspddfkkslerlire 123 (134)
T 2l69_A 87 QNRLEEFSREVRRRGFEVRTVTSPDDFKKSLERLIRE 123 (134)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCceEEEecChHHHHHHHHHHHHH
Confidence 3555666666777788888766666777777777776
No 91
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=73.07 E-value=30 Score=27.80 Aligned_cols=131 Identities=11% Similarity=0.048 Sum_probs=75.6
Q ss_pred CeEEEee--cCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHH
Q 041485 19 RSIGVAL--DFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQD 96 (179)
Q Consensus 19 ~~ILv~v--d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (179)
+.+|+=+ |.--....||..|++. +.++..|++.++....... + .+.. ... .......-+
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~~--~--~~~~-----~~~------~~r~~Fl~~ 100 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTTH--F--FNFP-----KTG------ALRGGFLME 100 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBCT--T--TCCB-----SSC------HHHHHHHHH
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc----CCcEEEEEEECchhhcccc--c--ccCC-----CCC------HHHHHHHHH
Confidence 3455555 4334456677777663 4578899998875321000 0 0000 000 011223346
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCC--CCEEEEcC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANAS--CPVTIVKD 172 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~--~pVlvv~~ 172 (179)
.+..+.+.+++.|+.+. +..|++.+.|.+.+++.+++.|+...... +..... -....+.+.... |++..+..
T Consensus 101 sL~~L~~~L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~V~~~~~~~-p~~~~r-d~~v~~~l~~~gv~i~~~~~~~ 174 (525)
T 2j4d_A 101 CLVDLRKNLMKRGLNLL--IRSGKPEEILPSLAKDFGARTVFAHKETC-SEEVDV-ERLVNQGLKRVGNSTKLELIWG 174 (525)
T ss_dssp HHHHHHHHHHHTTCCCE--EEESCHHHHHHHHHHHHTCSEEEEECCCS-HHHHHH-HHHHHHHHHTTCSSCEEEEECC
T ss_pred HHHHHHHHHHHcCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEeccCC-HHHHHH-HHHHHHHHHhcCCceEEEEecC
Confidence 66677777777787655 34699999999999999999999875432 222222 223344555555 78777654
No 92
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=72.93 E-value=13 Score=27.37 Aligned_cols=37 Identities=8% Similarity=-0.120 Sum_probs=24.8
Q ss_pred CCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEE
Q 041485 17 NNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHI 54 (179)
Q Consensus 17 ~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v 54 (179)
.+++|.|-++++..+..++=.+.+- ...++++.+|-.
T Consensus 87 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~i~~Vis 123 (287)
T 3nrb_A 87 DRKKVVIMVSKFDHCLGDLLYRHRL-GELDMEVVGIIS 123 (287)
T ss_dssp CCCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEEEEE
T ss_pred CCcEEEEEEeCCCcCHHHHHHHHHC-CCCCeEEEEEEe
Confidence 4678999999988888777666653 234556555444
No 93
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=71.79 E-value=15 Score=24.19 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGL 144 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~ 144 (179)
+.+.+.+.+.+.+.|++++..-........+.....+ +|.||+|+...
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~d~ii~Gspty 62 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSS--ARGIVLGTPPS 62 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHH--CSEEEEECCBS
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHh--CCEEEEEcCCc
Confidence 4555566666666777766544444445556655666 89999998754
No 94
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=71.07 E-value=11 Score=29.63 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=69.8
Q ss_pred ccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHHHHHHHHhhcC
Q 041485 29 KGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVLDMLDAASKQK 108 (179)
Q Consensus 29 ~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (179)
-....||..|++ .+.+|..|++.++..... . + .. ........-+.+..+.+.+++.
T Consensus 13 l~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~-------~-----~--~~------~~~r~~Fl~~sL~~L~~~L~~~ 68 (440)
T 2e0i_A 13 LEDNTGLNYALS----ECDRVIPVFIADPRQLIN-------N-----P--YK------SEFAVSFMINSLLELDDELRKK 68 (440)
T ss_dssp SSSCHHHHHHHH----HSSEEEEEEEECHHHHSS-------C-----T--TC------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHh----cCCCEEEEEEeChhhhcc-------C-----C--cC------CHHHHHHHHHHHHHHHHHHHHc
Confidence 344557777776 356899999988742100 0 0 00 0111223346667777777777
Q ss_pred CceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 109 HVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 109 ~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
|+.+. +..|++.+.|.+.++ +++.|+..... .+.... ......+.+....|++..+...
T Consensus 69 G~~L~--v~~g~~~~~l~~l~~--~~~~v~~~~~~-~~~~~~-rd~~v~~~l~~~gi~~~~~~~~ 127 (440)
T 2e0i_A 69 GSRLN--VFFGEAEKVVSRFFN--KVDAIYVNEDY-TPFSIS-RDEKIRKVCEENGIEFKAYEDY 127 (440)
T ss_dssp TCCCE--EEESCHHHHHHHHCT--TCSEEEEECCC-SHHHHH-HHHHHHHHHHTTTCEEEEECCS
T ss_pred CCeEE--EEECCHHHHHHHHHc--CCCEEEEeccc-ChHHHH-HHHHHHHHHHHcCceEEEecCC
Confidence 87655 346999999999999 89999986543 222221 2233445566667888777643
No 95
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=70.92 E-value=16 Score=27.18 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=25.3
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEe
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIK 55 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~ 55 (179)
.++++|.+++ -.|.-++.. +...|..+..+|+.
T Consensus 179 ~~kvlvllSG-vDS~vaa~l----l~~~G~~v~~v~~~ 211 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALAIFL----MMKRGVEVIPVYIG 211 (307)
T ss_dssp TCEEEEECSS-HHHHHHHHH----HHHBTCEEEEEEES
T ss_pred CCcEEEEEeC-CcHHHHHHH----HHhCCCeEEEEEEE
Confidence 4689999999 887755443 34478999999987
No 96
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=70.82 E-value=13 Score=24.48 Aligned_cols=48 Identities=17% Similarity=0.077 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccC-hhHHHHHHHHhCCCCEEEEecCCC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGD-ARDKLCEAVEAMKLDSLVMGSRGL 144 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~i~~~a~~~~~dlvVlg~~~~ 144 (179)
+.+.+.+.+.+.+.|++++..-.... ....+.....+ +|.||+|+...
T Consensus 19 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~d~ii~Gspty 67 (159)
T 3fni_A 19 DRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGR--CTGLVIGMSPA 67 (159)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHT--EEEEEEECCBT
T ss_pred HHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHh--CCEEEEEcCcC
Confidence 46666666666667877665443333 45556655555 89999998754
No 97
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=70.68 E-value=22 Score=27.78 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=28.6
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
.++++|++++.-.|.-++.++.+ .+..+..+++...
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~Lke----~G~eViavt~d~G 49 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLCE----KGFDVIAYVANVG 49 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEESS
T ss_pred cCCEEEEeCCcHHHHHHHHHHHH----CCCeEEEEEEEcC
Confidence 47899999999888888777755 3778888888654
No 98
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=70.13 E-value=26 Score=24.82 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=28.2
Q ss_pred HHHhhcCCceEEEEEecc--C---hhHHHHHHHHhCCCCEEEEecCC
Q 041485 102 DAASKQKHVSVVAKLYWG--D---ARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 102 ~~~~~~~~~~~~~~~~~g--~---~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
.+.+++.|+++...-... + ...++.+..++.++|++|+....
T Consensus 65 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 111 (229)
T 3auf_A 65 LERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYM 111 (229)
T ss_dssp HHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcCCCEEEECcccccchhhccHHHHHHHHhcCCCEEEEcChh
Confidence 355677788765422111 1 14678888999999999998664
No 99
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=69.44 E-value=13 Score=30.16 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=59.4
Q ss_pred cCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHHHHHHHHh
Q 041485 26 DFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVLDMLDAAS 105 (179)
Q Consensus 26 d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (179)
|.--....||..|++ .+.+|..|++.++.........+ ..|.. ... ........+.+..+.+.+
T Consensus 14 DLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~~~~-~~g~~-----~~g------~~r~~Fl~~sL~~L~~~L 77 (537)
T 3fy4_A 14 GLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDPSAF-SPGSS-----RAG------VNRIRFLLESLKDLDSSL 77 (537)
T ss_dssp CCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCTTSS-SSBCS-----SCB------HHHHHHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHh----cCCCEEEEEEeChhhhccccccc-ccccc-----cCC------HHHHHHHHHHHHHHHHHH
Confidence 444456667777765 45689999998864211000000 00000 000 111233456667777777
Q ss_pred hcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecC
Q 041485 106 KQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSR 142 (179)
Q Consensus 106 ~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~ 142 (179)
++.|+... +..|++.+.|.+.+++.+++.|+....
T Consensus 78 ~~~G~~L~--v~~G~~~~vl~~L~~~~~~~~V~~n~~ 112 (537)
T 3fy4_A 78 KKLGSRLL--VFKGEPGEVLVRCLQEWKVKRLCFEYD 112 (537)
T ss_dssp HHTTCCCE--EEESCHHHHHHHHHTTSCEEEEEECCC
T ss_pred HHcCCceE--EEECCHHHHHHHHHHHcCCCEEEEecc
Confidence 77776654 456999999999999999999998653
No 100
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=68.35 E-value=18 Score=24.00 Aligned_cols=68 Identities=10% Similarity=0.076 Sum_probs=41.4
Q ss_pred HHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcC--CCCEEEEc
Q 041485 101 LDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANA--SCPVTIVK 171 (179)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~--~~pVlvv~ 171 (179)
+...++..|.++...- ..-+.+.+++.+++.++|+|.++....+.... +......+-... +++|++=.
T Consensus 38 va~~l~~~G~eVi~lG-~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~--~~~~i~~L~~~g~~~i~v~vGG 107 (161)
T 2yxb_A 38 VARALRDAGFEVVYTG-LRQTPEQVAMAAVQEDVDVIGVSILNGAHLHL--MKRLMAKLRELGADDIPVVLGG 107 (161)
T ss_dssp HHHHHHHTTCEEECCC-SBCCHHHHHHHHHHTTCSEEEEEESSSCHHHH--HHHHHHHHHHTTCTTSCEEEEE
T ss_pred HHHHHHHCCCEEEECC-CCCCHHHHHHHHHhcCCCEEEEEeechhhHHH--HHHHHHHHHhcCCCCCEEEEeC
Confidence 4455667787755321 23678899999999999999998764433322 233333333322 36776643
No 101
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=68.10 E-value=30 Score=24.87 Aligned_cols=68 Identities=18% Similarity=0.075 Sum_probs=42.8
Q ss_pred HHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc-CCCCEEEEc
Q 041485 101 LDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN-ASCPVTIVK 171 (179)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~ 171 (179)
+...++..|.++...- ..-+.+.+++.+++.++|+|.++....+.... +......+=+. .++||++-.
T Consensus 143 va~~L~~~G~~Vi~LG-~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~--~~~~i~~l~~~~~~~~v~vGG 211 (258)
T 2i2x_B 143 VTALLRANGYNVVDLG-RDVPAEEVLAAVQKEKPIMLTGTALMTTTMYA--FKEVNDMLLENGIKIPFACGG 211 (258)
T ss_dssp HHHHHHHTTCEEEEEE-EECCSHHHHHHHHHHCCSEEEEECCCTTTTTH--HHHHHHHHHTTTCCCCEEEES
T ss_pred HHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEEeeccCCHHH--HHHHHHHHHhcCCCCcEEEEC
Confidence 4455677788766433 24688999999999999999998754333332 22233333222 348887764
No 102
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=67.90 E-value=10 Score=28.73 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=35.0
Q ss_pred ChhHHHHHHHHhCCCCEEEEecCC-CcccccccccchhHHHhhcCCCCEEEEcCCC
Q 041485 120 DARDKLCEAVEAMKLDSLVMGSRG-LGTIQRVLLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 120 ~~~~~i~~~a~~~~~dlvVlg~~~-~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
.+..+.++.+++ +|+||+|..+ .+...-.++=.-..+.++.+++|++.|.+-.
T Consensus 166 ~~~p~~l~AI~~--AD~IvlgPGS~~TSI~P~Llv~gi~~Ai~~s~A~kV~v~N~~ 219 (332)
T 2ppv_A 166 EPMNEAIEALEQ--ADLIVLGPGSLYTSVISNLCVKGISEALLRTSAPKLYVSNVM 219 (332)
T ss_dssp CCCHHHHHHHHH--CSEEEECSSCCCCCCHHHHTSHHHHHHHHHCCSCEEEECCSB
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHhcccccCchHHHHHHhCCCCEEEEcCCC
Confidence 445788888888 9999999763 2222222222333455788999999987643
No 103
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=67.76 E-value=35 Score=25.29 Aligned_cols=122 Identities=9% Similarity=0.042 Sum_probs=75.9
Q ss_pred CeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHH
Q 041485 19 RSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVL 98 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (179)
-+|||++.........++++..+. ...+-++++++......+ ...++ +
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt-~~~G~ltv~~i~p~~~~~------------------------------~l~~q-l 68 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDIT-YPKGSVKLLGLAGNTDKE------------------------------NLLSQ-L 68 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH-TTTCEEEEEECC---CTT------------------------------CHHHH-H
T ss_pred CcEEEecCCchhhhhHHHHHHHhc-cCceeEEEEEEccCCCcc------------------------------HHHHH-H
Confidence 489999977777778888888876 355678999986443210 00122 3
Q ss_pred HHHHHHhhcCCceEEEEEec-cChhHHHHHHHHh-----CCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 99 DMLDAASKQKHVSVVAKLYW-GDARDKLCEAVEA-----MKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~-----~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
+.+.+.+++.++...+.+.. .++...+...++. ..+..|+||.........- +..+.. -+.+...-|+++..
T Consensus 69 ~~l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~-y~~~i~-~~~~~~~nVlil~~ 146 (294)
T 3g40_A 69 PSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEE-IREIIR-KASMYRMGVLLFSK 146 (294)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHH-HHHHHH-HHHHTTCEEEEEEC
T ss_pred HHHHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHH-HHHHHH-HHHHhCceEEEEec
Confidence 67788899999988887766 5777777666554 5578899997654332221 222323 24456788988865
Q ss_pred CC
Q 041485 173 PS 174 (179)
Q Consensus 173 ~~ 174 (179)
++
T Consensus 147 ~~ 148 (294)
T 3g40_A 147 HP 148 (294)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 104
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=66.16 E-value=8.7 Score=29.17 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=34.2
Q ss_pred ChhHHHHHHHHhCCCCEEEEecCC-CcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 120 DARDKLCEAVEAMKLDSLVMGSRG-LGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 120 ~~~~~i~~~a~~~~~dlvVlg~~~-~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
.+..+.++.+++ +|+||+|..+ .+..--.++=.-..+.++.+++|++.|.+-
T Consensus 177 ~a~p~al~AI~~--AD~IvlgPGSlyTSI~P~Llv~gi~~Ai~~s~A~kV~V~Nl 229 (341)
T 2p0y_A 177 QAVQPVIDAIMA--ADQIVLGPGSLFTSILPNLTIGNIGRAVCESDAEVVYICNI 229 (341)
T ss_dssp CCCHHHHHHHHH--CSEEEECSSCCCCCCHHHHSSHHHHHHHHHCSSEEEEECCS
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHhcccccCccHHHHHHhCCCCEEEEeCC
Confidence 456678888888 9999999753 222222222223345578899999998764
No 105
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=66.13 E-value=10 Score=28.59 Aligned_cols=52 Identities=12% Similarity=0.213 Sum_probs=35.0
Q ss_pred ChhHHHHHHHHhCCCCEEEEecCC-Ccccc-cccccchhHHHhhcCCCCEEEEcCCC
Q 041485 120 DARDKLCEAVEAMKLDSLVMGSRG-LGTIQ-RVLLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 120 ~~~~~i~~~a~~~~~dlvVlg~~~-~~~~~-~~~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
.+..+.++.+++ +|+||+|..+ .+... .++...+ .+.++.+++|++.|.+-.
T Consensus 167 ~~~p~~l~AI~~--AD~IvlgPGS~~TSI~P~Llv~gi-~~Ai~~s~A~kV~v~Nl~ 220 (323)
T 2o2z_A 167 KPLREGLEAIRK--ADVIVIGPGSLYTSVLPNLLVPGI-CEAIKQSTARKVYICNVM 220 (323)
T ss_dssp CCCHHHHHHHHH--CSEEEECSSCTTTTHHHHHTSTTH-HHHHHHCCSEEEEECCSB
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHhcccccCchH-HHHHHhCCCCEEEEcCCC
Confidence 456788888888 9999999763 22222 2233334 445788899999987654
No 106
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=65.86 E-value=31 Score=24.05 Aligned_cols=42 Identities=5% Similarity=0.029 Sum_probs=27.9
Q ss_pred HHHhhcCCceEEEEEec--cCh---hHHHHHHHHhCCCCEEEEecCC
Q 041485 102 DAASKQKHVSVVAKLYW--GDA---RDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 102 ~~~~~~~~~~~~~~~~~--g~~---~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
.+.+++.|+++...... .+. ..++.+..++.++|++|+....
T Consensus 46 ~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~ 92 (212)
T 3av3_A 46 IERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYM 92 (212)
T ss_dssp HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEEchhh
Confidence 34566778876542211 111 3578888999999999998654
No 107
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=65.26 E-value=21 Score=24.64 Aligned_cols=70 Identities=17% Similarity=0.117 Sum_probs=42.4
Q ss_pred HHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcC---CCCEEEEcC
Q 041485 100 MLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANA---SCPVTIVKD 172 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~---~~pVlvv~~ 172 (179)
.+...++..|.++.. .-..-+.+.+++.+++.++|+|.++....+.... +....+.+=+.. .+||++-..
T Consensus 107 ~va~~l~~~G~~v~~-LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 107 LVAMMLESGGFTVYN-LGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMN--MKSTIDALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHHHHHHTTCEEEE-CCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHH--HHHHHHHHHHTTCGGGCEEEEEST
T ss_pred HHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHhcCCCCCCeEEEECC
Confidence 344555677877654 2235788999999999999999998753332222 222333332232 278777643
No 108
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=64.85 E-value=15 Score=22.53 Aligned_cols=62 Identities=15% Similarity=0.276 Sum_probs=31.6
Q ss_pred HHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 100 MLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+.+.+.+.++++++....-. .+..+. .++|+++.+..-.....+ ........++||.++++
T Consensus 23 kl~~~~~~~gi~~~i~~~~~~---~~~~~~--~~~D~Ii~t~~l~~~~~~------~~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 23 RIEKYAKSKNINATIEAIAET---RLSEVV--DRFDVVLLAPQSRFNKKR------LEEITKPKGIPIEIINT 84 (109)
T ss_dssp HHHHHHHHHTCSEEEEEECST---THHHHT--TTCSEEEECSCCSSHHHH------HHHHHHHHTCCEEECCH
T ss_pred HHHHHHHHCCCCeEEEEecHH---HHHhhc--CCCCEEEECCccHHHHHH------HHHHhcccCCCEEEECh
Confidence 444555666776655333221 122223 459999998653322211 12233344688887754
No 109
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=64.49 E-value=8.1 Score=26.44 Aligned_cols=37 Identities=8% Similarity=-0.047 Sum_probs=29.9
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEe
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIK 55 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~ 55 (179)
+++|++++.++....++++....+.+ .+.+++++--.
T Consensus 2 ~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T~ 38 (181)
T 1g63_A 2 YGKLLICATASINVININHYIVELKQ-HFDEVNILFSP 38 (181)
T ss_dssp CCCEEEEECSCGGGGGHHHHHHHHTT-TSSCEEEEECG
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEch
Confidence 48999999999999999988888754 47788777643
No 110
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=63.18 E-value=7.6 Score=25.14 Aligned_cols=40 Identities=5% Similarity=-0.144 Sum_probs=26.4
Q ss_pred CCCeEEEeecCCcc----HHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 17 NNRSIGVALDFSKG----SKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 17 ~~~~ILv~vd~s~~----s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
.||++++.+..+++ +..++++|...+.. +..+.++...+.
T Consensus 4 ~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~-~~~v~Vff~~DG 47 (136)
T 2hy5_B 4 VVKKFMYLNRKAPYGTIYAWEALEVVLIGAAF-DQDVCVLFLDDG 47 (136)
T ss_dssp -CCEEEEEECSCTTTSSHHHHHHHHHHHHGGG-CCEEEEEECGGG
T ss_pred chhEEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCCEEEEEEhHH
Confidence 36889999987765 45667777665544 567766666543
No 111
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=63.04 E-value=10 Score=28.56 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=33.9
Q ss_pred ChhHHHHHHHHhCCCCEEEEecCC-CcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 120 DARDKLCEAVEAMKLDSLVMGSRG-LGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 120 ~~~~~i~~~a~~~~~dlvVlg~~~-~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
.+..+.++.+++ +|+||+|..+ .+..--.++=.-..+.++.+++|++.|.+-
T Consensus 173 ~a~p~al~AI~~--AD~IvlgPGSl~TSI~P~Llv~gi~~Ai~~s~A~kV~v~Nl 225 (326)
T 2q7x_A 173 LASRRVVQTILE--SDMIVLGPGSLFTSILPNIVIXEIGRALLETXAEIAYVCNI 225 (326)
T ss_dssp CBCSHHHHHHHH--CSEEEECSSCCCCCCHHHHTSHHHHHHHHHCSSEEEEECCS
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHHhhhhhhccHHHHHHhccCceEEeccC
Confidence 345678888888 9999999753 222222222223345578889999998764
No 112
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=62.72 E-value=8.5 Score=26.93 Aligned_cols=45 Identities=9% Similarity=-0.122 Sum_probs=29.4
Q ss_pred HHHhhcCCCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEE
Q 041485 10 FFFKMASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHI 54 (179)
Q Consensus 10 ~~~~m~~~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v 54 (179)
....|....++|++++.++-...++.+....+.+..+.+++++--
T Consensus 11 ~~~~~~l~~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~T 55 (206)
T 1qzu_A 11 AAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTT 55 (206)
T ss_dssp -----CCSSEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEEC
T ss_pred hhhhcccCCCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 334454446899999999999999888888875535777777653
No 113
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=62.65 E-value=32 Score=26.21 Aligned_cols=48 Identities=2% Similarity=-0.056 Sum_probs=22.0
Q ss_pred HHHHHHHhhcCCCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEE
Q 041485 6 NKLIFFFKMASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHI 54 (179)
Q Consensus 6 ~~~~~~~~m~~~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v 54 (179)
.+....++++. |++|++.+.--++..........+-+..+.++.+++-
T Consensus 14 ~~~~~~~~~~~-m~ki~~v~Gtr~~~~~~a~li~~l~~~~~~~~~~~~t 61 (396)
T 3dzc_A 14 GTENLYFQSNA-MKKVLIVFGTRPEAIKMAPLVQQLCQDNRFVAKVCVT 61 (396)
T ss_dssp ----------C-CEEEEEEECSHHHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred CcchhhHHhCC-CCeEEEEEeccHhHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 34445555554 7889888876665555544444444334555555554
No 114
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=62.51 E-value=39 Score=24.00 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.+.+.+.+.+.|..+.+....++.. ..+++.....++|-||+..... .. ..-..+....+||+++..
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~------~~~~~~~~~~iPvV~~~~ 95 (291)
T 3egc_A 24 AEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG--EH------DYLRTELPKTFPIVAVNR 95 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS--CC------HHHHHSSCTTSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC--Ch------HHHHHhhccCCCEEEEec
Confidence 4566677777888888877655444443 3466777778899999865432 11 122345667899999965
Q ss_pred CCC
Q 041485 173 PSA 175 (179)
Q Consensus 173 ~~~ 175 (179)
...
T Consensus 96 ~~~ 98 (291)
T 3egc_A 96 ELR 98 (291)
T ss_dssp CCC
T ss_pred ccC
Confidence 443
No 115
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=62.47 E-value=27 Score=24.22 Aligned_cols=43 Identities=7% Similarity=-0.041 Sum_probs=25.6
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEec
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGS 141 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~ 141 (179)
..+.+.+.++..|.++...-......+.+.+..++ +|.|+++-
T Consensus 45 ~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~--ad~I~l~G 87 (206)
T 3l4e_A 45 YVEAGKKALESLGLLVEELDIATESLGEITTKLRK--NDFIYVTG 87 (206)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH--SSEEEECC
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh--CCEEEECC
Confidence 34455566666777655432222344555666666 89999976
No 116
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=62.45 E-value=55 Score=25.74 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=27.1
Q ss_pred HHHHHhhcCCceEEEEEeccChh---HHHHHHHHhCCCCEEEEecCCCccc
Q 041485 100 MLDAASKQKHVSVVAKLYWGDAR---DKLCEAVEAMKLDSLVMGSRGLGTI 147 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~g~~~---~~i~~~a~~~~~dlvVlg~~~~~~~ 147 (179)
++..+....++++.......++. ...++.++..++|+|++-+.++...
T Consensus 146 qL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~ 196 (443)
T 3dm5_A 146 QLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKE 196 (443)
T ss_dssp HHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSC
T ss_pred HHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence 34444555566544322123443 3445667777899999987765543
No 117
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=62.42 E-value=33 Score=25.57 Aligned_cols=72 Identities=13% Similarity=-0.016 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHh-hcCCCCEEEEcCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVL-ANASCPVTIVKDP 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il-~~~~~pVlvv~~~ 173 (179)
+..+.+.+.++..++++....... ..+..+...+...++|+||+.-- -+.+. .++..++ ....+|+.++|-.
T Consensus 42 ~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GG-DGTv~-----~v~~~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 42 RELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGG-DGTLN-----EVVNGIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEEC-HHHHH-----HHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcC-chHHH-----HHHHHHHhCCCCCcEEEecCC
Confidence 445566777777888777654333 34555655555567888776522 22222 2334443 3567999999854
No 118
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=62.12 E-value=44 Score=24.48 Aligned_cols=77 Identities=9% Similarity=0.008 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHHH--HHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDKL--CEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i--~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.+.+.... .+.+-.-+...+..+.| .+.|++.++|.+++-........+--+=..-..|...++.||++...
T Consensus 57 ~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 135 (292)
T 2ojp_A 57 ADVVMMTLDLADG-RIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNV 135 (292)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECC
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3455555555433 34444333333444443 56688899998888754332222211112446788889999999854
No 119
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=62.11 E-value=51 Score=25.29 Aligned_cols=94 Identities=12% Similarity=0.061 Sum_probs=58.9
Q ss_pred CeEEEeecCCccHHHHHHHHHHHhcCCCC---------E-----EEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHH
Q 041485 19 RSIGVALDFSKGSKLALKWAIDNLLEKGD---------T-----LYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQE 84 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~la~~~~~---------~-----l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (179)
-+|-|++..-..|..-.+.+.++.+..+. . =.++|+..+..+.+
T Consensus 13 ~~igi~t~t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~s---------------------- 70 (371)
T 3qi7_A 13 FKVAVVTQPLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTS---------------------- 70 (371)
T ss_dssp EEEEEEECCTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGG----------------------
T ss_pred eEEEEEcCCcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchH----------------------
Confidence 37888888777777777777777666543 1 24777755543321
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecC
Q 041485 85 VMKQYEVDLDQDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSR 142 (179)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~ 142 (179)
..+...+.+.+.+...+.++-.......-....++.+++.++|.|+++..
T Consensus 71 --------e~~ttI~~I~~~a~~~gyk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 71 --------NIDSAINKIVKLADDKEVQAIVVSTDQAGLLPALQKVKEKRPEIITISAP 120 (371)
T ss_dssp --------GHHHHHHHHHGGGGCTTEEEEEEECSSCCCHHHHHHHHHHCTTSEEEESS
T ss_pred --------HHHHHHHHHHHHhhcCCCeEEEEECCCcchHHHHHHHHhcCCCEEEEecc
Confidence 11234666777778888665543322222366778888888998887754
No 120
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=61.99 E-value=37 Score=23.66 Aligned_cols=84 Identities=11% Similarity=0.003 Sum_probs=50.0
Q ss_pred CeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHH
Q 041485 19 RSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVL 98 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (179)
++|.|-++++.....++-.++. ....+.++.+|....+..
T Consensus 1 ~ri~vl~Sg~gsnl~ali~~~~-~~~~~~~i~~Vis~~~~~--------------------------------------- 40 (212)
T 1jkx_A 1 MNIVVLISGNGSNLQAIIDACK-TNKIKGTVRAVFSNKADA--------------------------------------- 40 (212)
T ss_dssp CEEEEEESSCCHHHHHHHHHHH-TTSSSSEEEEEEESCTTC---------------------------------------
T ss_pred CEEEEEEECCcHHHHHHHHHHH-cCCCCceEEEEEeCCCch---------------------------------------
Confidence 3688888888776666555443 222345555544432221
Q ss_pred HHHHHHhhcCCceEEEEEec--cC---hhHHHHHHHHhCCCCEEEEecCC
Q 041485 99 DMLDAASKQKHVSVVAKLYW--GD---ARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~--g~---~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
...+.+++.|+++...-.. .+ ...++.+..++.++|++|+....
T Consensus 41 -~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 89 (212)
T 1jkx_A 41 -FGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFM 89 (212)
T ss_dssp -HHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEESSCC
T ss_pred -HHHHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEeChh
Confidence 0235567778876542211 11 13678888999999999998654
No 121
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=61.55 E-value=46 Score=24.51 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
++..+.+.+......+.+-.-+...+..+. +.+.+++.++|.+++-........+--+=..-..|...++.||++...
T Consensus 63 ~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 142 (301)
T 3m5v_A 63 RTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNV 142 (301)
T ss_dssp HHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 355555555554324555443333344444 346789999999988865332222211122446788889999999853
No 122
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=61.54 E-value=45 Score=24.44 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHHH--HHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDKL--CEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i--~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.+.+.... .+.+-.-+...+..+.| .+.|++.++|.+++-........+--+=..-..|...++.||++...
T Consensus 56 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 134 (294)
T 2ehh_A 56 EKVIEFAVKRAAG-RIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNI 134 (294)
T ss_dssp HHHHHHHHHHHTT-SSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3444555555433 34544333333444444 57789999999888754332222211112345788888999999853
No 123
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=60.92 E-value=51 Score=24.88 Aligned_cols=88 Identities=7% Similarity=0.021 Sum_probs=53.7
Q ss_pred eEEEeecCCcc--HHHHHHHHHHHhc-CCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHH
Q 041485 20 SIGVALDFSKG--SKLALKWAIDNLL-EKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQD 96 (179)
Q Consensus 20 ~ILv~vd~s~~--s~~al~~a~~la~-~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (179)
++++|-.+... ....++...+.+. ....++.++|...... .+.
T Consensus 227 ~~i~pgHg~~~~~~~~~~~~~~~~~~~~~~~k~~i~~~S~~gn----------------------------------T~~ 272 (404)
T 2ohh_A 227 QMIAPSHGQIWTDPMKIIEAYTGWATGMVDERVTVIYDTMHGS----------------------------------TRK 272 (404)
T ss_dssp SEEECSSSCBBSSHHHHHHHHHHHHTTCCCSEEEEEECCSSSH----------------------------------HHH
T ss_pred cEEecCCCccccCHHHHHHHHHHHhccCCCCcEEEEEECCChH----------------------------------HHH
Confidence 56777765433 4566666666664 3557788777654321 145
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
+.+.+.+.+.+.+++++..-........+.....+ +|.||+|+..
T Consensus 273 la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~--~d~iiigsP~ 317 (404)
T 2ohh_A 273 MAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILE--SGAIALGAPT 317 (404)
T ss_dssp HHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHT--CSEEEEECCE
T ss_pred HHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHH--CCEEEEECcc
Confidence 55566666666777766544444334455555555 9999999763
No 124
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=60.53 E-value=41 Score=23.66 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
..+.+.+.+.+.+.|.++......++.. ..+++.....++|-||+..... .. .-..+....+||+++..
T Consensus 23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~~------~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 23 TELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---PQ------TVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---HH------HHHHHHTTSSCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---HH------HHHHHHHCCCCEEEEec
Confidence 4666777788888898877655555443 3566777788999999976543 11 12346667899999965
Q ss_pred CC
Q 041485 173 PS 174 (179)
Q Consensus 173 ~~ 174 (179)
..
T Consensus 94 ~~ 95 (276)
T 3jy6_A 94 EM 95 (276)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 125
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=60.03 E-value=48 Score=24.26 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.+.+.... .+.+-.-+...+..+. +.+.|++.++|.+++-........+--+=..-..|...++.||++...
T Consensus 56 ~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 134 (292)
T 2vc6_A 56 EQVVEITIKTANG-RVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNI 134 (292)
T ss_dssp HHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3445555555432 3444433333344444 456789999999888765332222211112335788889999999753
No 126
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=60.02 E-value=5.5 Score=26.35 Aligned_cols=56 Identities=13% Similarity=0.136 Sum_probs=34.7
Q ss_pred cChhHHHHHHHHhCCCCEEEEecCCCc-ccccc---cccchhHHHhhcCCCCEEEEcCCC
Q 041485 119 GDARDKLCEAVEAMKLDSLVMGSRGLG-TIQRV---LLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 119 g~~~~~i~~~a~~~~~dlvVlg~~~~~-~~~~~---~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
....+.|.+.+++++++.+|+|-.-.. +-... ..-.++..+....++||..+.+..
T Consensus 41 ~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 41 DYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp BCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCC
Confidence 346788999999999999999943110 00000 001233455555689999987654
No 127
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=59.91 E-value=8.7 Score=25.02 Aligned_cols=55 Identities=7% Similarity=0.119 Sum_probs=35.1
Q ss_pred ChhHHHHHHHHhCCCCEEEEecCC-Cccccc---ccccchhHHHhhcCCCCEEEEcCCC
Q 041485 120 DARDKLCEAVEAMKLDSLVMGSRG-LGTIQR---VLLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 120 ~~~~~i~~~a~~~~~dlvVlg~~~-~~~~~~---~~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
.....|.+++++.+++.||+|-.- ..+-.. ...-..+.++-...++||..+.+..
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DERl 98 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERL 98 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 447889999999999999999431 111110 1112345566555689999986543
No 128
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=59.75 E-value=48 Score=24.20 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.+.+.... .+.+-.-+...+..+. +.+.|++.++|.+++-........+--+=..-..|...++.||++...
T Consensus 56 ~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 134 (289)
T 2yxg_A 56 KKVIEKVVDVVNG-RVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNV 134 (289)
T ss_dssp HHHHHHHHHHHTT-SSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3444555554433 3454433333344444 456788999998888754332222211112345788888999999853
No 129
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=59.65 E-value=45 Score=26.63 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=74.1
Q ss_pred eEEEee--cCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHH
Q 041485 20 SIGVAL--DFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDV 97 (179)
Q Consensus 20 ~ILv~v--d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (179)
.+|+=+ |.--....||..|++. + ++..|++.++..... ... .. ......-+.
T Consensus 13 ~~l~WfrrDLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~-----------~~~----~~------~~~~fl~~s 66 (509)
T 1u3d_A 13 CSIVWFRRDLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGH-----------YHP----GR------VSRWWLKNS 66 (509)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTT-----------CCC----CH------HHHHHHHHH
T ss_pred cEEEEECCCCccchhHHHHHHHhC----C-CEEEEEEECchhccc-----------CCc----ch------HHHHHHHHH
Confidence 344444 4444556678888774 2 567888888753110 000 00 001123466
Q ss_pred HHHHHHHhhcCCceEEEEEec-cChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 98 LDMLDAASKQKHVSVVAKLYW-GDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
+..+.+.+++.|+.+.+ .. |++.+.|.+.+++.+++.|+.... ..+.... ......+.+....|++..+..
T Consensus 67 L~~L~~~L~~~G~~L~v--~~~g~~~~~l~~l~~~~~~~~V~~~~~-~~p~~~~-rd~~v~~~l~~~gi~~~~~~~ 138 (509)
T 1u3d_A 67 LAQLDSSLRSLGTCLIT--KRSTDSVASLLDVVKSTGASQIFFNHL-YDPLSLV-RDHRAKDVLTAQGIAVRSFNA 138 (509)
T ss_dssp HHHHHHHHHHTTCCEEE--EECSCHHHHHHHHHHHHTCCEEEEECC-CSHHHHH-HHHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHHHHHHCCCeEEE--EeCCCHHHHHHHHHHHcCCCEEEEecc-cCHHHHH-HHHHHHHHHHHcCcEEEEECC
Confidence 66777777777877654 33 699999999999999999998753 2333321 222335566677888877764
No 130
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=59.03 E-value=52 Score=24.39 Aligned_cols=75 Identities=11% Similarity=0.075 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHHH--HHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDKL--CEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i--~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
.+..+.+.+.... .+.+-.-+.. +..+.| .+.|++.++|.+++-........+--+=..-..|...++.||++..
T Consensus 68 ~~vi~~~~~~~~g-rvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (314)
T 3d0c_A 68 KQVATRVTELVNG-RATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF 144 (314)
T ss_dssp HHHHHHHHHHHTT-SSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3445555555432 4555554444 555444 5678999999998876433222221111234568888999999986
No 131
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=58.83 E-value=56 Score=24.64 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.+.+.... .+.+-.-+...+..+. +.+.|++.++|.+++-........+--+=..-..|...++.||++...
T Consensus 87 ~~vi~~~ve~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~ 165 (343)
T 2v9d_A 87 KAIARFAIDHVDR-RVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNF 165 (343)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3445555555432 3444433333344444 456788999998888754322222211112345788889999999854
No 132
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=58.79 E-value=23 Score=24.52 Aligned_cols=36 Identities=8% Similarity=-0.049 Sum_probs=29.1
Q ss_pred CeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEE
Q 041485 19 RSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHI 54 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v 54 (179)
++|++++.++-.+.++++....+.+..+.+++++--
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~T 36 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMS 36 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEEC
Confidence 379999999999999998888886544788877653
No 133
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=58.38 E-value=30 Score=21.39 Aligned_cols=71 Identities=11% Similarity=0.037 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHh-CCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA-MKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~-~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
..+.+...+...|..+.. ..+..+.+ +...+ ..+|+|++...-......+ .....+-....+||+++-...
T Consensus 17 ~~~~l~~~L~~~g~~v~~---~~~~~~a~-~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~ii~ls~~~ 88 (140)
T 3h5i_A 17 QAKTIANILNKYGYTVEI---ALTGEAAV-EKVSGGWYPDLILMDIELGEGMDGV---QTALAIQQISELPVVFLTAHT 88 (140)
T ss_dssp HHHHHHHHHHHTTCEEEE---ESSHHHHH-HHHHTTCCCSEEEEESSCSSSCCHH---HHHHHHHHHCCCCEEEEESSS
T ss_pred HHHHHHHHHHHcCCEEEE---ecChHHHH-HHHhcCCCCCEEEEeccCCCCCCHH---HHHHHHHhCCCCCEEEEECCC
Confidence 334455555556765442 23444444 44444 7899999986532112221 123344344569999986544
No 134
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=58.32 E-value=28 Score=21.06 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=37.4
Q ss_pred HHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcC-CCCEEEEcCCC
Q 041485 98 LDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANA-SCPVTIVKDPS 174 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~~ 174 (179)
.+.+...+...|..+.. .. ...+..+..+...+|+|++...-.. ...+ .....+-... .+|++++-...
T Consensus 20 ~~~l~~~L~~~g~~v~~---~~-~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 20 RSLLDSWFSSLGATTVL---AA-DGVDALELLGGFTPDLMICDIAMPR-MNGL---KLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp HHHHHHHHHHTTCEEEE---ES-CHHHHHHHHTTCCCSEEEECCC------CH---HHHHHHHHTTCCCCEEEEECCC
T ss_pred HHHHHHHHHhCCceEEE---eC-CHHHHHHHHhcCCCCEEEEecCCCC-CCHH---HHHHHHHhcCCCCCEEEEEcCC
Confidence 34455555666765442 22 3445566677888999999865321 1111 1223333333 48999886543
No 135
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=58.06 E-value=46 Score=23.47 Aligned_cols=66 Identities=11% Similarity=0.177 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcCCce-EEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 95 QDVLDMLDAASKQKHVS-VVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
.++.+.+.+.+.+.|.. +......++.. ..+++.....++|-||+.. ..+. -+....+||+++.
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~~~----------~~~~~~iPvV~~~ 92 (277)
T 3hs3_A 26 AQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA---FTIP----------PNFHLNTPLVMYD 92 (277)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---CCCC----------TTCCCSSCEEEES
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---hHHH----------HHHhCCCCEEEEc
Confidence 46666777778888888 66544444443 3456677778899999876 1111 1456689999986
Q ss_pred CC
Q 041485 172 DP 173 (179)
Q Consensus 172 ~~ 173 (179)
..
T Consensus 93 ~~ 94 (277)
T 3hs3_A 93 SA 94 (277)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 136
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=58.02 E-value=28 Score=20.89 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=38.2
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
+.+...++..|..+.. ..+ ..+..+.+++..+|++++...-. ...++ .....+-...++|++++-..
T Consensus 16 ~~l~~~L~~~g~~v~~---~~~-~~~al~~~~~~~~dlii~D~~~p-~~~g~---~~~~~lr~~~~~~ii~~t~~ 82 (120)
T 3f6p_A 16 DILEFNLRKEGYEVHC---AHD-GNEAVEMVEELQPDLILLDIMLP-NKDGV---EVCREVRKKYDMPIIMLTAK 82 (120)
T ss_dssp HHHHHHHHHTTCEEEE---ESS-HHHHHHHHHTTCCSEEEEETTST-TTHHH---HHHHHHHTTCCSCEEEEEES
T ss_pred HHHHHHHHhCCEEEEE---eCC-HHHHHHHHhhCCCCEEEEeCCCC-CCCHH---HHHHHHHhcCCCCEEEEECC
Confidence 3444555556765432 233 34556667788899999986532 22221 23344444557899888543
No 137
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=58.00 E-value=13 Score=25.89 Aligned_cols=40 Identities=15% Similarity=0.031 Sum_probs=29.5
Q ss_pred hcCCCCeEEEeecCCccHH-HHHHHHHHHhcCCCCEEEEEEE
Q 041485 14 MASNNRSIGVALDFSKGSK-LALKWAIDNLLEKGDTLYIIHI 54 (179)
Q Consensus 14 m~~~~~~ILv~vd~s~~s~-~al~~a~~la~~~~~~l~ll~v 54 (179)
|.-..++|++++.++-... ++++....+.+ .+.+++++--
T Consensus 3 m~l~~k~I~lgiTGs~aa~~k~~~ll~~L~~-~g~eV~vv~T 43 (201)
T 3lqk_A 3 MNFAGKHVGFGLTGSHCTYHEVLPQMERLVE-LGAKVTPFVT 43 (201)
T ss_dssp CCCTTCEEEEECCSCGGGGGGTHHHHHHHHH-TTCEEEEECS
T ss_pred CCcCCCEEEEEEEChHHHHHHHHHHHHHHhh-CCCEEEEEEC
Confidence 4333689999999998777 78888777654 4777776654
No 138
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=57.88 E-value=50 Score=24.18 Aligned_cols=77 Identities=8% Similarity=0.122 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.+.+.... .+.+-.-+...+..+. +.+.|++.++|.+++-........+--+=..-..|...++.||++...
T Consensus 60 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 138 (293)
T 1f6k_A 60 KEIFRIAKDEAKD-QIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSI 138 (293)
T ss_dssp HHHHHHHHHHHTT-SSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 3444555555432 3454443333344444 456788899998888754332222211112345678888999999853
No 139
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=57.65 E-value=58 Score=24.42 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHHH--HHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDKL--CEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i--~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.+.+.... .+.+-.-+...+..+.| .+.|++.++|.+++-........+--+=..-..|...++.||++...
T Consensus 90 ~~vi~~~ve~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~ 168 (332)
T 2r8w_A 90 RRAIEAAATILRG-RRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNN 168 (332)
T ss_dssp HHHHHHHHHHHTT-SSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3445555555432 35544444333454444 57788999999888764332222211112335688888999999853
No 140
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=57.60 E-value=47 Score=24.31 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.+.+.... .+.+-.-+...+..+. +.+.|++.++|.+++-........+--+=..-..|...++.||++...
T Consensus 57 ~~v~~~~~~~~~g-r~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 135 (291)
T 3a5f_A 57 KETIKFVIDKVNK-RIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNV 135 (291)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3455555555433 3444443333344444 456789999999888764332222111111224567778999999853
No 141
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=57.17 E-value=18 Score=24.55 Aligned_cols=35 Identities=20% Similarity=0.052 Sum_probs=28.0
Q ss_pred CeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEE
Q 041485 19 RSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHI 54 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v 54 (179)
++|++++.++....++++....+.+ .+.+++++--
T Consensus 6 k~IllgvTGs~aa~k~~~ll~~L~~-~g~~V~vv~T 40 (175)
T 3qjg_A 6 ENVLICLCGSVNSINISHYIIELKS-KFDEVNVIAS 40 (175)
T ss_dssp CEEEEEECSSGGGGGHHHHHHHHTT-TCSEEEEEEC
T ss_pred CEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEEC
Confidence 8999999999999998887777654 5777776653
No 142
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=57.15 E-value=19 Score=25.92 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCCC
Q 041485 123 DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 123 ~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
..+++.+++.++|++|+.+.+. ...+ +.-++.++....+|++|+.+.+
T Consensus 54 ~~~~~~~~~~~pDfvI~isPN~-a~PG---P~~ARE~l~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 54 EMALDIAEDFEPDFIVYGGPNP-AAPG---PSKAREMLADSEYPAVIIGDAP 101 (283)
T ss_dssp HHHHHHHHHHCCSEEEEECSCT-TSHH---HHHHHHHHHTSSSCEEEEEEGG
T ss_pred HHhhhhhhhcCCCEEEEECCCC-CCCC---chHHHHHHHhCCCCEEEEcCCc
Confidence 3344556888999999986642 3332 4577889999999999996543
No 143
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=55.96 E-value=59 Score=24.01 Aligned_cols=77 Identities=5% Similarity=0.005 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
++..+.+.+.... .+.+-.-+...+..+. +.+.|++.++|.+++-........+--+=..-..|...++.||++...
T Consensus 68 ~~vi~~~~~~~~g-rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 146 (306)
T 1o5k_A 68 EKLVSRTLEIVDG-KIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNV 146 (306)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3455555555432 3444433333344444 456788899999888764332222211112345788889999999853
No 144
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=55.61 E-value=57 Score=24.02 Aligned_cols=77 Identities=10% Similarity=0.137 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCC-CCEEEEc
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANAS-CPVTIVK 171 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~-~pVlvv~ 171 (179)
.+..+.+.+.... .+.+-.-+...+..+. +.+.|++.++|.+++-........+--+=..-..|...++ .||++..
T Consensus 67 ~~v~~~~~~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn 145 (303)
T 2wkj_A 67 EQVLEIVAEEAKG-KIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYN 145 (303)
T ss_dssp HHHHHHHHHHHTT-TSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 3445555555432 3454443333344444 4567889999988887543322222111123456788888 9999985
Q ss_pred C
Q 041485 172 D 172 (179)
Q Consensus 172 ~ 172 (179)
.
T Consensus 146 ~ 146 (303)
T 2wkj_A 146 I 146 (303)
T ss_dssp C
T ss_pred C
Confidence 3
No 145
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=55.50 E-value=57 Score=26.11 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=30.9
Q ss_pred hHHHHHHH-HhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 122 RDKLCEAV-EAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 122 ~~~i~~~a-~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
...+.+.+ +..++|.||+-.+..+.-+ ..-.+++..++||++..
T Consensus 60 ~~~~~~~~n~~~~vdgvi~~~~TFs~a~------~~i~~l~~l~~PvL~~~ 104 (500)
T 4f2d_A 60 ITAICRDANYDDRCAGLVVWLHTFSPAK------MWINGLTMLNKPLLQFH 104 (500)
T ss_dssp HHHHHHHHHHCTTEEEEEEECCSCCCTH------HHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHhccccCCcEEEEeCCcCccHH------HHHHHHHhcCCCEEEEe
Confidence 34455555 5668999999877655433 33567888999999974
No 146
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=55.06 E-value=53 Score=24.15 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHHH--HHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDKL--CEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i--~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.+.+.... .+.+-.-+...+..+.| .+.|++.++|.+++-........+--+=..-..|...++.||++...
T Consensus 56 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 134 (297)
T 2rfg_A 56 KRVVALVAEQAQG-RVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNI 134 (297)
T ss_dssp HHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3445555555433 34444333333444444 56788999999988764332222211112345688888999999853
No 147
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=54.99 E-value=32 Score=20.68 Aligned_cols=70 Identities=6% Similarity=-0.035 Sum_probs=39.0
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc---CCCCEEEEcCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN---ASCPVTIVKDP 173 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv~~~ 173 (179)
..+.+...+...|..+.. -....+..+..++..+|+|++...-. ....+ ....++-.. ..+||+++...
T Consensus 15 ~~~~l~~~L~~~g~~v~~----~~~~~~a~~~l~~~~~dlii~D~~l~-~~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 15 AAETFKELLEMLGFQADY----VMSGTDALHAMSTRGYDAVFIDLNLP-DTSGL---ALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp HHHHHHHHHHHTTEEEEE----ESSHHHHHHHHHHSCCSEEEEESBCS-SSBHH---HHHHHHHHSCCSSCCEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEE----ECCHHHHHHHHHhcCCCEEEEeCCCC-CCCHH---HHHHHHHhhhccCCCCEEEEECC
Confidence 334455555666764332 23345556667778899999986532 22211 233444433 45899988654
Q ss_pred C
Q 041485 174 S 174 (179)
Q Consensus 174 ~ 174 (179)
.
T Consensus 87 ~ 87 (127)
T 3i42_A 87 A 87 (127)
T ss_dssp -
T ss_pred c
Confidence 4
No 148
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=54.82 E-value=56 Score=23.44 Aligned_cols=35 Identities=6% Similarity=-0.063 Sum_probs=26.4
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEe
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIK 55 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~ 55 (179)
.++++|++++.-.|..++..+.+.. +.++..+++.
T Consensus 25 ~~~vvv~lSGGiDSsv~~~l~~~~~---~~~v~av~~~ 59 (268)
T 1xng_A 25 FKKVVYGLSGGLDSAVVGVLCQKVF---KENAHALLMP 59 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEECC
T ss_pred CCCEEEEccCcHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 5789999999998888777776644 3456666664
No 149
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=54.70 E-value=37 Score=21.33 Aligned_cols=71 Identities=6% Similarity=0.034 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc-CCCCEEEEcCCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN-ASCPVTIVKDPS 174 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~~~~ 174 (179)
...+.+...+...|..+.. .. ...+.++..++..+|+|++...-. ....+ .....+-.. ..+||+++-...
T Consensus 25 ~~~~~l~~~L~~~g~~v~~---~~-~~~~a~~~l~~~~~dlvi~D~~l~-~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 25 VILQRLQQLLSPLPYTLHF---AR-DATQALQLLASREVDLVISAAHLP-QMDGP---TLLARIHQQYPSTTRILLTGDP 96 (153)
T ss_dssp HHHHHHHHHHTTSSCEEEE---ES-SHHHHHHHHHHSCCSEEEEESCCS-SSCHH---HHHHHHHHHCTTSEEEEECCCC
T ss_pred HHHHHHHHHhcccCcEEEE---EC-CHHHHHHHHHcCCCCEEEEeCCCC-cCcHH---HHHHHHHhHCCCCeEEEEECCC
Confidence 3444556666666755432 23 344455566778899999986532 22211 122333333 358998886543
No 150
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=53.87 E-value=64 Score=23.79 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.+.+.... .+.+-.-+...+..+. +.+.|++.++|.+++-........+--+=..-..|...++.||++...
T Consensus 72 ~~v~~~~~~~~~g-rvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 150 (304)
T 3cpr_A 72 LELLKAVREEVGD-RAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYDI 150 (304)
T ss_dssp HHHHHHHHHHHTT-TSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3445555554432 3454433333344444 456789999998888754322222211112345688888999999854
No 151
>3r89_A Orotidine 5'-phosphate decarboxylase; PSI-biology, midwest center for structural genomics, MCSG, O 5-phosphate decarboxylase, lyase; 1.84A {Anaerococcus prevotii}
Probab=53.82 E-value=34 Score=25.26 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=33.5
Q ss_pred hHHHHHHHHhhcCCCCeEEEeecCCcc------------HHHHHHHHHHHhcCCCCEEEEEEEe
Q 041485 4 TLNKLIFFFKMASNNRSIGVALDFSKG------------SKLALKWAIDNLLEKGDTLYIIHIK 55 (179)
Q Consensus 4 ~~~~~~~~~~m~~~~~~ILv~vd~s~~------------s~~al~~a~~la~~~~~~l~ll~v~ 55 (179)
+..+|... ... ...+.|.+|.++. .....+|...++...+..+-.+.+-
T Consensus 6 ~~~rL~~~-~~k--~s~LcvglDp~~~~lp~~~~~~~~~~~~l~~f~~~ivd~l~~~v~~~Kvg 66 (290)
T 3r89_A 6 IIDKLYEK-VSK--NGFVCIGLDSSIDYIPENMKAGKSVSEALFSYNKEIIDQTYDVCAIYKLQ 66 (290)
T ss_dssp HHHHHHHH-HHH--HCSEEEECCCCGGGSCHHHHTTCCHHHHHHHHHHHHHHHHTTSCSEEEEE
T ss_pred HHHHHHHH-HHh--CCCEEEEECCChhhCchhhccccchHHHHHHHHHHHHHHhCCcceEEEec
Confidence 55667776 333 3679999999873 3455678888888877766666553
No 152
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=53.76 E-value=49 Score=24.26 Aligned_cols=71 Identities=13% Similarity=0.124 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEec-cChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhh-cCCCCEEEEcCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYW-GDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLA-NASCPVTIVKDP 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~-~~~~pVlvv~~~ 173 (179)
+..+.+.+.++..++++++.... ...+..+.+.+.+ ++|.||+..- -+.+. .+...++. ...+|+.++|-.
T Consensus 26 ~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~GG-DGTl~-----~v~~~l~~~~~~~~l~iiP~G 98 (304)
T 3s40_A 26 TNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFGG-DGTVF-----ECTNGLAPLEIRPTLAIIPGG 98 (304)
T ss_dssp HHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEEC-HHHHH-----HHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEcc-chHHH-----HHHHHHhhCCCCCcEEEecCC
Confidence 34455666666778877765544 2455566666544 6888776522 22222 23344443 267899999864
No 153
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=53.05 E-value=16 Score=25.18 Aligned_cols=35 Identities=6% Similarity=-0.106 Sum_probs=28.5
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEE
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIH 53 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~ 53 (179)
.++|++++.++..+.++.+....+.+ .+.+++++-
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~ 42 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKS-FFKEIRVVM 42 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTT-TSSEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 48999999999998898888877744 577877764
No 154
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=53.01 E-value=57 Score=23.00 Aligned_cols=74 Identities=12% Similarity=0.058 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.+.+.+.+.+.|.++.+....++.. ...++.....++|-||+......... .. -+.+....+||+++..
T Consensus 21 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~-----~~-~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 21 LKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLN-----PW-LQKINDAGIPLFTVDT 94 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHH-----HH-HHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH-----HH-HHHHHHCCCcEEEecC
Confidence 3566677777788888877665445543 34555666678999998754311111 11 2345567899999865
Q ss_pred CC
Q 041485 173 PS 174 (179)
Q Consensus 173 ~~ 174 (179)
..
T Consensus 95 ~~ 96 (291)
T 3l49_A 95 AT 96 (291)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 155
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=52.93 E-value=59 Score=23.09 Aligned_cols=70 Identities=9% Similarity=0.070 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEEecc--Chh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEE
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWG--DAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIV 170 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g--~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 170 (179)
..+.+.+.+.+++.|.++.+....+ ++. ...++.+...++|-||+.......... ... -+. ..+||+++
T Consensus 21 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~-----~~~-~~~-~~iPvV~~ 93 (304)
T 3o1i_D 21 LSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEH-----NLK-SWV-GNTPVFAT 93 (304)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTT-----THH-HHT-TTSCEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHH-----HHH-HHc-CCCCEEEe
Confidence 3555666667777788777655554 543 345555666789999987554332222 223 345 78999998
Q ss_pred c
Q 041485 171 K 171 (179)
Q Consensus 171 ~ 171 (179)
-
T Consensus 94 ~ 94 (304)
T 3o1i_D 94 V 94 (304)
T ss_dssp S
T ss_pred c
Confidence 4
No 156
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=52.82 E-value=88 Score=25.07 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=28.5
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
.+++++++++.-.|.-++..+.+. .+.+++.+|+...
T Consensus 227 ~~~vvvalSGGvDSsv~a~ll~~a---~G~~v~av~v~~g 263 (525)
T 1gpm_A 227 DDKVILGLSGGVDSSVTAMLLHRA---IGKNLTCVFVDNG 263 (525)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECS
T ss_pred ccceEEEecCCCCHHHHHHHHHHH---hCCCEEEEEEeCC
Confidence 479999999998888777666553 2567888988764
No 157
>3l52_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, PSI-2, protein structure initiative; 1.35A {Streptomyces avermitilis} PDB: 3v75_A*
Probab=52.76 E-value=39 Score=24.86 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCCeEEEeecCCcc----------HHHHHHHHHHHhcCCCCEEEEEEE
Q 041485 5 LNKLIFFFKMASNNRSIGVALDFSKG----------SKLALKWAIDNLLEKGDTLYIIHI 54 (179)
Q Consensus 5 ~~~~~~~~~m~~~~~~ILv~vd~s~~----------s~~al~~a~~la~~~~~~l~ll~v 54 (179)
..+|...+... ..+.|.+|.++. .....+++..++...+..+-.+.+
T Consensus 12 ~~rL~~~~~~~---~~LcvglDp~~~~lp~~~l~~~~~~~~~~~~~ivd~l~~~v~~~Kv 68 (284)
T 3l52_A 12 GARLSRAMDDR---GPLCVGIDPHASLLADWGLSDDVAGLERFSRTVVEALGEHVAVFKP 68 (284)
T ss_dssp HHHHHHHHHHH---CSCEEEECCCHHHHHHTTCCSSHHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHhc---CCeEEEECCChhhccccccccchHHHHHHHHHHHHHhCCcceEEEe
Confidence 34455554443 459999998876 344568888888887776666555
No 158
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=52.60 E-value=59 Score=23.03 Aligned_cols=72 Identities=7% Similarity=0.034 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEEecc--ChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWG--DARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.+.+.+.+.+.|..+......+ +....+.+.....++|-||+....... ..-..+....+||+++..
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--------~~~~~l~~~~iPvV~i~~ 97 (288)
T 3gv0_A 26 SQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND--------PRVRFMTERNMPFVTHGR 97 (288)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC--------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc--------HHHHHHhhCCCCEEEECC
Confidence 4667777788888888776644333 334567777777889999986432111 112345667899999865
Q ss_pred CC
Q 041485 173 PS 174 (179)
Q Consensus 173 ~~ 174 (179)
..
T Consensus 98 ~~ 99 (288)
T 3gv0_A 98 SD 99 (288)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 159
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=52.45 E-value=21 Score=21.47 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHHHHhCCCCEEEEe
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEAVEAMKLDSLVMG 140 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dlvVlg 140 (179)
+..+.+.++...+...+-+.+... ..++.-+.++++.++..+++-
T Consensus 37 elkdsieelvkkynativvvvvddkewaekairfvkslgaqvliii 82 (134)
T 2l69_A 37 ELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIII 82 (134)
T ss_dssp HHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEE
T ss_pred HHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEE
Confidence 444444444444444444333332 445555555565555555443
No 160
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=52.25 E-value=59 Score=22.94 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhH--HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARD--KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
..+.+.+.+.+.+.|.++.+....++... ..++.....++|-||+.......... . -+.+....+||+++..
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~-----~-~~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 24 QRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGS-----A-IEEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHH-----H-HHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHH-----H-HHHHHHcCCCEEEecC
Confidence 35666777777888888776555555543 45566667889999997543222111 1 2345566899999965
Q ss_pred CC
Q 041485 173 PS 174 (179)
Q Consensus 173 ~~ 174 (179)
..
T Consensus 98 ~~ 99 (293)
T 3l6u_A 98 MI 99 (293)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 161
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=51.76 E-value=14 Score=18.78 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=18.9
Q ss_pred eEEEEEec-cChhHHHHHHHHhCCCCE
Q 041485 111 SVVAKLYW-GDARDKLCEAVEAMKLDS 136 (179)
Q Consensus 111 ~~~~~~~~-g~~~~~i~~~a~~~~~dl 136 (179)
.+..++.. .+..++|++|+++.++|-
T Consensus 11 kvslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 11 KVSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred eeEEEEeeCCchhHHHHHHHHHccchh
Confidence 34444444 478899999999988774
No 162
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=51.69 E-value=84 Score=24.51 Aligned_cols=30 Identities=3% Similarity=-0.131 Sum_probs=20.5
Q ss_pred CCccHHHHHHHHHHHhcCCCCEEEEEEEeC
Q 041485 27 FSKGSKLALKWAIDNLLEKGDTLYIIHIKL 56 (179)
Q Consensus 27 ~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 56 (179)
++--+.-+...|..++...+-.+.++-...
T Consensus 110 GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 110 GAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp TSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 445567778888888776577777666543
No 163
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=50.96 E-value=40 Score=20.63 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=37.8
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhh---cCCCCEEEEcCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLA---NASCPVTIVKDP 173 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~---~~~~pVlvv~~~ 173 (179)
..+.+...+.+.|..+.. .. ...+.++.++...+|+|++...-. ....+ .....+-. ...+||+++-..
T Consensus 18 ~~~~l~~~l~~~g~~v~~---~~-~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 89 (140)
T 3grc_A 18 IARLLNLMLEKGGFDSDM---VH-SAAQALEQVARRPYAAMTVDLNLP-DQDGV---SLIRALRRDSRTRDLAIVVVSAN 89 (140)
T ss_dssp HHHHHHHHHHHTTCEEEE---EC-SHHHHHHHHHHSCCSEEEECSCCS-SSCHH---HHHHHHHTSGGGTTCEEEEECTT
T ss_pred HHHHHHHHHHHCCCeEEE---EC-CHHHHHHHHHhCCCCEEEEeCCCC-CCCHH---HHHHHHHhCcccCCCCEEEEecC
Confidence 334445555556765432 22 344555667778899999986532 22211 12233332 245899988643
No 164
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=50.67 E-value=37 Score=20.15 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=34.0
Q ss_pred HHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc---CCCCEEEE
Q 041485 100 MLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN---ASCPVTIV 170 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv 170 (179)
.+...+...|.++.. .. ...+..+..+...+|++++...-.+..... .....+-.. ..+||+++
T Consensus 20 ~l~~~L~~~g~~v~~---~~-~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~---~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 20 TLRSALEGRGFTVDE---TT-DGKGSVEQIRRDRPDLVVLAVDLSAGQNGY---LICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHTCEEEE---EC-CHHHHHHHHHHHCCSEEEEESBCGGGCBHH---HHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHhcCceEEE---ec-CHHHHHHHHHhcCCCEEEEeCCCCCCCCHH---HHHHHHhcCccccCCCEEEE
Confidence 344444445665431 22 334445566667799999986532122211 233444443 45999988
No 165
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=50.47 E-value=65 Score=22.91 Aligned_cols=74 Identities=12% Similarity=0.059 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEEec--cChhH--HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEE
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYW--GDARD--KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIV 170 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~--~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 170 (179)
..+.+.+.+.+++.|.++.+.... +++.. ..++.....++|-||+.......... .-+-+....+||+.+
T Consensus 19 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~------~~~~~~~~giPvV~~ 92 (297)
T 3rot_A 19 TSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSK------SLQRANKLNIPVIAV 92 (297)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHH------HHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHH------HHHHHHHCCCCEEEE
Confidence 355566666677778877765433 34443 44555666789999986543322221 123455668999998
Q ss_pred cCCC
Q 041485 171 KDPS 174 (179)
Q Consensus 171 ~~~~ 174 (179)
....
T Consensus 93 ~~~~ 96 (297)
T 3rot_A 93 DTRP 96 (297)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 6543
No 166
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=50.43 E-value=60 Score=22.50 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhcCCceEEEE-EeccChhHHHHHHHHhCCCCEEEEecC-CCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 95 QDVLDMLDAASKQKHVSVVAK-LYWGDARDKLCEAVEAMKLDSLVMGSR-GLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~i~~~a~~~~~dlvVlg~~-~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
++.++.+.+.+++.+++.-+. ...|..+....+.. .+..+|++..+ +...-...-+..-..+-|+....+|+.-.
T Consensus 29 ~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~t 105 (201)
T 1vp8_A 29 EETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQS 105 (201)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEEe
Confidence 577777788888778763332 33477777777765 45899999865 23222234466677777888888877543
No 167
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=49.97 E-value=63 Score=23.99 Aligned_cols=69 Identities=13% Similarity=0.238 Sum_probs=38.5
Q ss_pred HHHHHHhhcCCceEEEEEec-cChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhh---cCCCCEEEEcCC
Q 041485 99 DMLDAASKQKHVSVVAKLYW-GDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLA---NASCPVTIVKDP 173 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~---~~~~pVlvv~~~ 173 (179)
+.+.+.+.+.++++...... ......+...+...++|+||+..- -+.+ ..++..+.. ...+|+.++|-.
T Consensus 47 ~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GG-DGTl-----~~v~~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 47 REAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGG-DGTI-----NEVSTALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp HHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEES-HHHH-----HHHHHHHHHCCSSCCCEEEEEECS
T ss_pred HHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEcc-chHH-----HHHHHHHhhcccCCCCeEEEecCc
Confidence 34555666778777765433 233445554444456887766422 2222 234455553 467899999854
No 168
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=49.96 E-value=47 Score=21.10 Aligned_cols=71 Identities=8% Similarity=0.102 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHh---hcCCCCEEEEcCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVL---ANASCPVTIVKDP 173 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il---~~~~~pVlvv~~~ 173 (179)
..+.+...++..|....... .+ +.+-++..++..+|+|++-.. -....++ ....+|= ....+||+++...
T Consensus 24 ~r~~l~~~L~~~G~~~v~~a--~~-g~~al~~~~~~~~DlillD~~-MP~mdG~---el~~~ir~~~~~~~ipvI~lTa~ 96 (134)
T 3to5_A 24 MRRIVKNLLRDLGFNNTQEA--DD-GLTALPMLKKGDFDFVVTDWN-MPGMQGI---DLLKNIRADEELKHLPVLMITAE 96 (134)
T ss_dssp HHHHHHHHHHHTTCCCEEEE--SS-HHHHHHHHHHHCCSEEEEESC-CSSSCHH---HHHHHHHHSTTTTTCCEEEEESS
T ss_pred HHHHHHHHHHHcCCcEEEEE--CC-HHHHHHHHHhCCCCEEEEcCC-CCCCCHH---HHHHHHHhCCCCCCCeEEEEECC
Confidence 33445556666676422112 22 334455666778999999865 2333332 1223332 1245899998754
Q ss_pred C
Q 041485 174 S 174 (179)
Q Consensus 174 ~ 174 (179)
.
T Consensus 97 ~ 97 (134)
T 3to5_A 97 A 97 (134)
T ss_dssp C
T ss_pred C
Confidence 4
No 169
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=49.77 E-value=72 Score=23.22 Aligned_cols=73 Identities=11% Similarity=0.138 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhH--HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARD--KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.+.+.+.+.+.|..+......+++.. ..++.....++|-||+....... ......+...++||+++..
T Consensus 79 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 79 SELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-------DEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCH-------HHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCh-------HHHHHHHHcCCCCEEEEcC
Confidence 35666777778888887776554444443 35566777789999986542211 1224566777899998865
Q ss_pred CC
Q 041485 173 PS 174 (179)
Q Consensus 173 ~~ 174 (179)
..
T Consensus 152 ~~ 153 (338)
T 3dbi_A 152 RL 153 (338)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 170
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=49.34 E-value=83 Score=23.77 Aligned_cols=29 Identities=14% Similarity=0.066 Sum_probs=23.8
Q ss_pred ccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 29 KGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 29 ~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
..+.+.+++|+++|++.+.+++++|=...
T Consensus 144 ~~~eRiar~AF~~A~~rrkkvt~v~KaNv 172 (336)
T 1wpw_A 144 FASERIAKVGLNFALRRRKKVTCVHKANV 172 (336)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEECCcc
Confidence 45788999999999998888888876554
No 171
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=49.21 E-value=74 Score=23.20 Aligned_cols=77 Identities=10% Similarity=0.123 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.+.+.... .+.+-.-+...+..+. +.+.+++.++|.+++.........+--+=..-..|...++.||++...
T Consensus 57 ~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 135 (291)
T 3tak_A 57 TQVIKEIIRVANK-RIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNV 135 (291)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 3455555555543 3555443333344444 446789999999988764322222211113446788889999999854
No 172
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=49.04 E-value=41 Score=23.44 Aligned_cols=68 Identities=7% Similarity=0.015 Sum_probs=41.5
Q ss_pred HHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEE--ecCCCcccccccccchhHHHhhcC---CCCEEEEc
Q 041485 101 LDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVM--GSRGLGTIQRVLLGSVSNHVLANA---SCPVTIVK 171 (179)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVl--g~~~~~~~~~~~~gs~~~~il~~~---~~pVlvv~ 171 (179)
+...++..|.++.. .-..-|.+.+++.++++++|+|.+ +....+... .+......+-... ++||++-.
T Consensus 112 v~~~l~~~G~~Vi~-LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~--~~~~~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 112 VTTMLGANGFQIVD-LGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSML--GQKDLMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp HHHHHHHTSCEEEE-CCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHT--HHHHHHHHHHHTTCGGGSEEEEES
T ss_pred HHHHHHHCCCeEEE-cCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHH--HHHHHHHHHHHcCCCCCCEEEEEC
Confidence 44556777877553 223578999999999999999999 544322222 1233444444332 36776643
No 173
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=48.76 E-value=62 Score=22.12 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=32.3
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHH--HHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCE--AVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~--~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
+.+.+.+.+.+.+++ +..++..+.+.. .. ..++|.+| ++ |.++..|=++.++||+-++..
T Consensus 18 ~~~~~i~~e~~~~i~--i~~~~l~~~v~~a~~~-~~~~dVII-SR-----------Ggta~~lr~~~~iPVV~I~~s 79 (196)
T 2q5c_A 18 NLFPKLALEKNFIPI--TKTASLTRASKIAFGL-QDEVDAII-SR-----------GATSDYIKKSVSIPSISIKVT 79 (196)
T ss_dssp HHHHHHHHHHTCEEE--EEECCHHHHHHHHHHH-TTTCSEEE-EE-----------HHHHHHHHTTCSSCEEEECCC
T ss_pred HHHHHHHhhhCCceE--EEECCHHHHHHHHHHh-cCCCeEEE-EC-----------ChHHHHHHHhCCCCEEEEcCC
Confidence 334444444444444 444554433332 23 56788444 31 345556666778999988754
No 174
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=48.59 E-value=70 Score=22.69 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccCh-hHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDA-RDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
++.+.+.+.+.+.|..+......++. ....++.....++|-||+....... ... ..+.. .+||+++...
T Consensus 28 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~-~~~~~-~iPvV~i~~~ 97 (289)
T 3k9c_A 28 DLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDT-------DEL-GALAD-RVPALVVARA 97 (289)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCH-------HHH-HHHHT-TSCEEEESSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCCH-------HHH-HHHHc-CCCEEEEcCC
Confidence 45555666666667665554433321 3444455555667777776443221 111 22334 7777777543
No 175
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=48.46 E-value=53 Score=21.87 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHH----hCCCCEEEEec
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVE----AMKLDSLVMGS 141 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~----~~~~dlvVlg~ 141 (179)
..+.+.+.+.|+++......+|-.+.|.+..+ ..++|+||..-
T Consensus 43 ~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 45667778889988877777766666655432 45689998753
No 176
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=48.40 E-value=22 Score=24.86 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=26.6
Q ss_pred CCeEEEeecCCccHHH-HHHHHHHHhcCCCCEEEEEEE
Q 041485 18 NRSIGVALDFSKGSKL-ALKWAIDNLLEKGDTLYIIHI 54 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~-al~~a~~la~~~~~~l~ll~v 54 (179)
.|+|++++.++-...+ +++....+.+ .+.+++++--
T Consensus 5 ~k~IllgiTGsiaayk~~~~ll~~L~~-~g~eV~vv~T 41 (207)
T 3mcu_A 5 GKRIGFGFTGSHCTYEEVMPHLEKLIA-EGAEVRPVVS 41 (207)
T ss_dssp TCEEEEEECSCGGGGTTSHHHHHHHHH-TTCEEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHHh-CCCEEEEEEe
Confidence 5899999999876665 6776666544 4788777654
No 177
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=47.87 E-value=82 Score=23.33 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
++..+.+.+.... .+.+-.-+...+..+. +.+.|++.++|.+++.........+--+=..-..|...++.||++...
T Consensus 79 ~~v~~~~v~~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 157 (314)
T 3qze_A 79 IQVIRRVVDQVKG-RIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNV 157 (314)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3445555555433 3454443333344444 446789999999988764322222211113446788888999999854
No 178
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=47.84 E-value=81 Score=23.23 Aligned_cols=76 Identities=16% Similarity=0.064 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
+..+.+.+.... .+.+-.-+...+..+. +.+.+++.++|.+++.........+--+=..-..|...++.||++...
T Consensus 72 ~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 149 (304)
T 3l21_A 72 ELLRAVLEAVGD-RARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDI 149 (304)
T ss_dssp HHHHHHHHHHTT-TSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEEC
T ss_pred HHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 444555555432 4555444433344443 446789999999988864322222211112446788999999999853
No 179
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=47.60 E-value=50 Score=20.71 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=36.5
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc-CCCCEEEEcCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN-ASCPVTIVKDP 173 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~~~ 173 (179)
+.+...+...|..+.. -....+..+..+...+|++++...-.. .... .....+-.. ..+||+++-..
T Consensus 17 ~~l~~~L~~~g~~v~~----~~~~~~a~~~l~~~~~dliild~~l~~-~~g~---~~~~~l~~~~~~~pii~ls~~ 84 (155)
T 1qkk_A 17 KAMQQTLELAGFTVSS----FASATEALAGLSADFAGIVISDIRMPG-MDGL---ALFRKILALDPDLPMILVTGH 84 (155)
T ss_dssp HHHHHHHHHTTCEEEE----ESCHHHHHHTCCTTCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTSCEEEEECG
T ss_pred HHHHHHHHHcCcEEEE----ECCHHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEECC
Confidence 3444455556765432 223455556667778999999865322 2211 123333333 35899988543
No 180
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=47.50 E-value=73 Score=22.63 Aligned_cols=72 Identities=10% Similarity=0.143 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
.++.+.+.+.+.+.|..+......+ .....+.+.....++|-||+....... ..-..+....+||+++...
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 26 LEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED--------FRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC--------HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh--------HHHHHHHhCCCCEEEECCC
Confidence 4566677777788888776654332 345677788888889999997543221 1123466778999998654
Q ss_pred C
Q 041485 174 S 174 (179)
Q Consensus 174 ~ 174 (179)
.
T Consensus 98 ~ 98 (294)
T 3qk7_A 98 H 98 (294)
T ss_dssp C
T ss_pred C
Confidence 3
No 181
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=47.23 E-value=85 Score=23.28 Aligned_cols=77 Identities=9% Similarity=0.088 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhH--HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARD--KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
++..+.+.+.... .+.+-.-+...+..+ ++.+.|++.++|.+++-........+--+=..-..|...++.||++...
T Consensus 80 ~~v~~~~v~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 158 (315)
T 3na8_A 80 DEVVDFTLKTVAH-RVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNN 158 (315)
T ss_dssp HHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 3455555555433 344444333334444 3446799999999999765332222211123446788889999999863
No 182
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=47.15 E-value=73 Score=22.67 Aligned_cols=92 Identities=18% Similarity=0.298 Sum_probs=48.6
Q ss_pred CeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHH
Q 041485 19 RSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVL 98 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (179)
.++++.+++...|..++-.+. ..+-++..++...+..... +.... .-.
T Consensus 5 MKvvvl~SGGkDSs~al~~l~----~~G~eV~~L~~~~~~~~~s----~~~h~------------------------~~~ 52 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAI----KNRFSVKFLVTMVSENEES----YMYHT------------------------INA 52 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHH----HTTCEEEEEEEEECC------------C------------------------CSS
T ss_pred CEEEEEecCcHHHHHHHHHHH----HcCCeEEEEEEEcCCCCCc----cccCC------------------------ccH
Confidence 479999999998887766554 3567777665544332100 00000 000
Q ss_pred HHHHHHhhcCCceEEEEEeccC---hhHHHHHHHHhCCCCEEEEecC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGD---ARDKLCEAVEAMKLDSLVMGSR 142 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~---~~~~i~~~a~~~~~dlvVlg~~ 142 (179)
+.+...++..|++....-..|. -.+.+.+..++.+++.+|.|.-
T Consensus 53 e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 53 NLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp SHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC--
T ss_pred HHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCc
Confidence 1122334445666555444442 3456666677778889988864
No 183
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=46.77 E-value=70 Score=22.20 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
..+.+.+.+.+++.|.++......+++. ..+++.....++|-||+....... . .. -..+....+||+++-.
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~-----~~-~~~~~~~~iPvV~~~~ 90 (272)
T 3o74_A 18 ARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE-D-----DS-YRELQDKGLPVIAIDR 90 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS-C-----CH-HHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc-H-----HH-HHHHHHcCCCEEEEcc
Confidence 4566677777788888877655445443 345666777789999997543111 1 11 2345667899999865
Q ss_pred CCC
Q 041485 173 PSA 175 (179)
Q Consensus 173 ~~~ 175 (179)
...
T Consensus 91 ~~~ 93 (272)
T 3o74_A 91 RLD 93 (272)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 184
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=46.69 E-value=70 Score=22.21 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhcCCceEEEEEe--ccChhH--HHHHHHHhCC-CCEEEEecCCCcccccccccchhHHHhhcCCCCEEE
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLY--WGDARD--KLCEAVEAMK-LDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTI 169 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~--~i~~~a~~~~-~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlv 169 (179)
.++.+.+.+.+.+.|.++..... .+++.. ..++.....+ +|-||+.......... .-+.+....+||++
T Consensus 16 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~------~~~~~~~~~ipvV~ 89 (276)
T 3ksm_A 16 RQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTP------SVAQYRARNIPVLV 89 (276)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHH------HHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHH------HHHHHHHCCCcEEE
Confidence 35556666677777887776442 234433 3444455556 9999997543222111 12345677899999
Q ss_pred EcCCC
Q 041485 170 VKDPS 174 (179)
Q Consensus 170 v~~~~ 174 (179)
+....
T Consensus 90 ~~~~~ 94 (276)
T 3ksm_A 90 VDSDL 94 (276)
T ss_dssp ESSCC
T ss_pred EecCC
Confidence 96543
No 185
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=46.59 E-value=79 Score=22.77 Aligned_cols=74 Identities=11% Similarity=-0.047 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhH--HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARD--KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.+.+.+.+++.|.++.+....+++.. ..++.....++|-||+.......... .-+.+....+||+++..
T Consensus 19 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~------~~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 19 IDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSD------VLKQAGEQGIKVIAYDR 92 (330)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHH------HHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHH------HHHHHHHCCCCEEEECC
Confidence 35666777777888988776655555543 34455555679999997543222111 12345667899999965
Q ss_pred CC
Q 041485 173 PS 174 (179)
Q Consensus 173 ~~ 174 (179)
..
T Consensus 93 ~~ 94 (330)
T 3uug_A 93 LI 94 (330)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 186
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=46.14 E-value=84 Score=22.99 Aligned_cols=76 Identities=9% Similarity=0.029 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcc-cccccccchhHHHhhcC---CCCEEE
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGT-IQRVLLGSVSNHVLANA---SCPVTI 169 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~-~~~~~~gs~~~~il~~~---~~pVlv 169 (179)
+..+.+.+.... .+.+-.-+...+..+. +.+.|++.++|.+++-...... ..+--+=..-..|...+ +.||++
T Consensus 60 ~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiil 138 (294)
T 3b4u_A 60 AILSSFIAAGIA-PSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILV 138 (294)
T ss_dssp HHHHHHHHTTCC-GGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHHHHhCC-CCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 444444444432 3454444433344444 4577899999999887653322 12111112345678888 899999
Q ss_pred EcC
Q 041485 170 VKD 172 (179)
Q Consensus 170 v~~ 172 (179)
...
T Consensus 139 Yn~ 141 (294)
T 3b4u_A 139 YNI 141 (294)
T ss_dssp EEC
T ss_pred EEC
Confidence 853
No 187
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=45.85 E-value=79 Score=22.53 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=27.4
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKL 56 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 56 (179)
.++++|++++.-.|..++..+.+. .+.++..+++..
T Consensus 26 ~~~vvv~lSGGiDSsv~a~l~~~~---~g~~v~av~~~~ 61 (249)
T 3p52_A 26 SQGVVLGLSGGIDSALVATLCKRA---LKENVFALLMPT 61 (249)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHH---HTTSEEEEECCS
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHH---cCCcEEEEEecC
Confidence 789999999998888777766653 246777777744
No 188
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=45.71 E-value=51 Score=20.34 Aligned_cols=68 Identities=9% Similarity=0.071 Sum_probs=37.0
Q ss_pred HHHHHHhhcCC-ceEEEEEeccChhHHHHHHHHh-CCCCEEEEecCCCcccccccccchhHHHhhcC-CCCEEEEcCC
Q 041485 99 DMLDAASKQKH-VSVVAKLYWGDARDKLCEAVEA-MKLDSLVMGSRGLGTIQRVLLGSVSNHVLANA-SCPVTIVKDP 173 (179)
Q Consensus 99 ~~~~~~~~~~~-~~~~~~~~~g~~~~~i~~~a~~-~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 173 (179)
+.+...+...| ..+.. ..+..+.+....+. ..+|+|++...-. ....+ .....+-... .+||+++-..
T Consensus 34 ~~l~~~L~~~g~~~v~~---~~~~~~~~~~~~~~~~~~dlvi~D~~l~-~~~g~---~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 34 AHLARLVGDAGRYRVTR---TVGRAAQIVQRTDGLDAFDILMIDGAAL-DTAEL---AAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp HHHHHHHHHHCSCEEEE---ECCCHHHHTTCHHHHTTCSEEEEECTTC-CHHHH---HHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHhhCCCeEEEE---eCCHHHHHHHHHhcCCCCCEEEEeCCCC-CccHH---HHHHHHHHhCCCCcEEEEeCC
Confidence 33444444445 55443 34555566666665 7899999986532 22211 1233333333 4889888654
No 189
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=45.47 E-value=79 Score=22.45 Aligned_cols=75 Identities=12% Similarity=0.128 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEE-eccChhH--HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 95 QDVLDMLDAASKQKHVSVVAKL-YWGDARD--KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~--~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
..+.+.+.+.+++.|.++.+.. ..+++.. ..++.+...++|-||+.......... . -+-+....+||+++.
T Consensus 20 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~-~~~~~~~~iPvV~~~ 93 (305)
T 3g1w_A 20 KRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTD-----T-INKAVDAGIPIVLFD 93 (305)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHH-----H-HHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHH-----H-HHHHHHCCCcEEEEC
Confidence 3566667777777788777633 2344443 34555666789999986543222111 1 233556789999996
Q ss_pred CCCC
Q 041485 172 DPSA 175 (179)
Q Consensus 172 ~~~~ 175 (179)
....
T Consensus 94 ~~~~ 97 (305)
T 3g1w_A 94 SGAP 97 (305)
T ss_dssp SCCT
T ss_pred CCCC
Confidence 5443
No 190
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=45.18 E-value=88 Score=22.90 Aligned_cols=77 Identities=14% Similarity=0.065 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.+.+.... .+.+-.-+...+..+. +.+.|++.++|.+++.........+--+=..-..|...++.||++...
T Consensus 63 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 141 (297)
T 3flu_A 63 TAVIEAVVKHVAK-RVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNV 141 (297)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 3455555555433 3555444433344443 446799999999988764322222211113446788889999999853
No 191
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=45.11 E-value=87 Score=22.78 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=33.2
Q ss_pred ChhHH--HHHHHHhCCCCEEEEecCCCcc-cccccccchhHHHhhcCCCCEEEEcC
Q 041485 120 DARDK--LCEAVEAMKLDSLVMGSRGLGT-IQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 120 ~~~~~--i~~~a~~~~~dlvVlg~~~~~~-~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
+..+. +.+.|++.++|.+++-...... ..+--+=..-..|...++.||++...
T Consensus 75 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~ 130 (286)
T 2r91_A 75 NADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYNY 130 (286)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 44444 4567889999999887654322 22111112345688888999999854
No 192
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=44.84 E-value=57 Score=24.26 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=28.2
Q ss_pred cChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEE
Q 041485 119 GDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVT 168 (179)
Q Consensus 119 g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVl 168 (179)
|.......+.....++|.||+-....+ ..+.+.+++.+||+
T Consensus 78 gEsl~DTarvLs~~~~D~iviR~~~~~---------~~~~la~~~~vPVI 118 (304)
T 3r7f_A 78 GETLYDTIRTLESIGVDVCVIRHSEDE---------YYEELVSQVNIPIL 118 (304)
T ss_dssp SSCHHHHHHHHHHHTCCEEEEECSSTT---------CHHHHHHHCSSCEE
T ss_pred CCCHHHHHHHHHHhcCCEEEEecCChh---------HHHHHHHhCCCCEE
Confidence 555666667777777899999755433 23556778899964
No 193
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=44.73 E-value=74 Score=23.21 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=33.3
Q ss_pred ChhHH--HHHHHHhCCCCEEEEecCCCcc-cccccccchhHHHhhcCCCCEEEEcC
Q 041485 120 DARDK--LCEAVEAMKLDSLVMGSRGLGT-IQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 120 ~~~~~--i~~~a~~~~~dlvVlg~~~~~~-~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
+..+. +.+.|++.++|.+++-...... ..+--+=..-..|...++.||++...
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~ 131 (288)
T 2nuw_A 76 NLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNY 131 (288)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 44444 4567899999998887543322 12111112345788889999999853
No 194
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=44.65 E-value=78 Score=23.13 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=33.0
Q ss_pred ChhHH--HHHHHHhCCCCEEEEecCCCcc-cccccccchhHHHhhcCCCCEEEEcC
Q 041485 120 DARDK--LCEAVEAMKLDSLVMGSRGLGT-IQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 120 ~~~~~--i~~~a~~~~~dlvVlg~~~~~~-~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
+..+. +.+.|++.++|.+++-...... ..+--+=..-..|...++.||++...
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~ 131 (293)
T 1w3i_A 76 NLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNY 131 (293)
T ss_dssp CHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 44444 3567888999988887653322 22111112345788888999999853
No 195
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=44.29 E-value=95 Score=23.02 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.+.+.... .+.+-.-+...+..+. +.+.+++.++|-+++-........+--+=..-..|...++.||++...
T Consensus 78 ~~v~~~~v~~~~g-rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 156 (315)
T 3si9_A 78 KRIIELCVEQVAK-RVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNI 156 (315)
T ss_dssp HHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeC
Confidence 3445555555433 3444433333344444 446799999999988764322222211112446788889999999854
No 196
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=43.52 E-value=1.2e+02 Score=23.79 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=24.5
Q ss_pred HHHHhhcCCceEEEEEeccChh---HHHHHHHHhCCCCEEEEecCCCcc
Q 041485 101 LDAASKQKHVSVVAKLYWGDAR---DKLCEAVEAMKLDSLVMGSRGLGT 146 (179)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~---~~i~~~a~~~~~dlvVlg~~~~~~ 146 (179)
+.......++++.......++. ...+..+...++|+|++...++..
T Consensus 144 L~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 144 LLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCcc
Confidence 3344444555543221112333 233445555679999999887655
No 197
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=43.30 E-value=82 Score=21.99 Aligned_cols=70 Identities=6% Similarity=0.017 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHH-HhhcCCCCEEEEc
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNH-VLANASCPVTIVK 171 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~-il~~~~~pVlvv~ 171 (179)
.++.+.+.+.+.+.|..+......++.. ..+++.....++|-||+... . ...-. .+....+||+++.
T Consensus 24 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~-----~-----~~~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 24 TLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF-----N-----ENIIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG-----G-----HHHHHHHHHHC-CCEEEGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC-----C-----hHHHHHHHHcCCCCEEEEe
Confidence 4666677777888888877655444443 45667777788999999651 1 11123 4566789999886
Q ss_pred CCC
Q 041485 172 DPS 174 (179)
Q Consensus 172 ~~~ 174 (179)
...
T Consensus 94 ~~~ 96 (277)
T 3e61_A 94 RIN 96 (277)
T ss_dssp GCC
T ss_pred ccC
Confidence 543
No 198
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=42.93 E-value=97 Score=22.74 Aligned_cols=77 Identities=9% Similarity=0.080 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.+.+.... .+.+-.-+...+..+. +.+.|++.++|.+++-........+--+=..-..|...++.||++...
T Consensus 68 ~~v~~~~~~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 146 (301)
T 1xky_A 68 VALYRHVVSVVDK-RVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNV 146 (301)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3445555555432 3444433332344444 456789999998888754332222211112345788889999999853
No 199
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=42.58 E-value=98 Score=22.70 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhH--HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARD--KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
+..+.+.+.... .+.+-.-+...+..+ .+.+.|++.++|.+++.........+--+=..-..|...++.||++...+
T Consensus 61 ~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P 139 (300)
T 3eb2_A 61 AVVRATIEAAQR-RVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNP 139 (300)
T ss_dssp HHHHHHHHHHTT-SSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECT
T ss_pred HHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECc
Confidence 444555555432 344444343334444 34467889999998887653322222111134467888899999999754
Q ss_pred C
Q 041485 174 S 174 (179)
Q Consensus 174 ~ 174 (179)
.
T Consensus 140 ~ 140 (300)
T 3eb2_A 140 Q 140 (300)
T ss_dssp T
T ss_pred c
Confidence 4
No 200
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=42.40 E-value=88 Score=22.10 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChh--HH---HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEE
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDAR--DK---LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTI 169 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~---i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlv 169 (179)
.++.+.+.+.+++.|..+......+++. .. .++.....++|-||+...... . .... .+....+||++
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-----~~~~-~l~~~~iPvV~ 95 (290)
T 2rgy_A 24 GTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH--D-----EDLD-ELHRMHPKMVF 95 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC--H-----HHHH-HHHHHCSSEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC--H-----HHHH-HHhhcCCCEEE
Confidence 3556666677777787766543333332 33 566666778999998644321 1 1112 34456799998
Q ss_pred EcCC
Q 041485 170 VKDP 173 (179)
Q Consensus 170 v~~~ 173 (179)
+...
T Consensus 96 ~~~~ 99 (290)
T 2rgy_A 96 LNRA 99 (290)
T ss_dssp ESSC
T ss_pred Eccc
Confidence 8543
No 201
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=42.11 E-value=84 Score=21.81 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHHHHHHHHhhcCCce
Q 041485 32 KLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVLDMLDAASKQKHVS 111 (179)
Q Consensus 32 ~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (179)
...++.++++|...|++..++|.-..... .. . ..+...+...+.+..+.+.+++.|+.
T Consensus 75 ~~~~~~~i~~A~~lGa~~v~~~~g~~~~~-------------------~~--~-~~~~~~~~~~~~l~~l~~~a~~~gv~ 132 (254)
T 3ayv_A 75 LRRLLFGLDRAAELGADRAVFHSGIPHGR-------------------TP--E-EALERALPLAEALGLVVRRARTLGVR 132 (254)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCCTTC-------------------CH--H-HHHHTHHHHHHHTHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCccc-------------------cc--c-cHHHHHHHHHHHHHHHHHHHhhcCCE
Confidence 45678889999999999887775332210 00 0 01111223345555666666777888
Q ss_pred EEEEEeccChhHHHHHHHHhC
Q 041485 112 VVAKLYWGDARDKLCEAVEAM 132 (179)
Q Consensus 112 ~~~~~~~g~~~~~i~~~a~~~ 132 (179)
+-.+...+.....+...++..
T Consensus 133 l~lEn~~~~~~~~~~~l~~~v 153 (254)
T 3ayv_A 133 LLLENSHEPHPEALRPVLEAH 153 (254)
T ss_dssp EEEECSSCSSGGGTHHHHHHH
T ss_pred EEEcCCCCCCHHHHHHHHHhc
Confidence 777665554445555555553
No 202
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=42.01 E-value=62 Score=20.21 Aligned_cols=68 Identities=10% Similarity=0.082 Sum_probs=37.8
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc-CCCCEEEEcC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN-ASCPVTIVKD 172 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~~ 172 (179)
..+.+...+...|..+. .-....+.....+...+|+|++...-.. ...+ .....+-.. ..+||+++-.
T Consensus 19 ~~~~l~~~L~~~g~~v~----~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~ 87 (154)
T 2rjn_A 19 ILNSLKRLIKRLGCNII----TFTSPLDALEALKGTSVQLVISDMRMPE-MGGE---VFLEQVAKSYPDIERVVISG 87 (154)
T ss_dssp HHHHHHHHHHTTTCEEE----EESCHHHHHHHHTTSCCSEEEEESSCSS-SCHH---HHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHHHHHHHHcCCeEE----EeCCHHHHHHHHhcCCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCcEEEEec
Confidence 33445555555676543 2223455667777788999999865322 2211 123334333 3589988854
No 203
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=41.98 E-value=1.1e+02 Score=23.01 Aligned_cols=88 Identities=7% Similarity=0.027 Sum_probs=51.5
Q ss_pred eEEEeecCCccH-----HHHHHHHHHHhcC-CCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhh
Q 041485 20 SIGVALDFSKGS-----KLALKWAIDNLLE-KGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDL 93 (179)
Q Consensus 20 ~ILv~vd~s~~s-----~~al~~a~~la~~-~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (179)
++++|-.+.... ...++...+++.. .+.++.++|......
T Consensus 220 ~~i~p~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~kv~i~y~S~~Gn---------------------------------- 265 (402)
T 1e5d_A 220 EFICPDHGVIFRGADQCTFAVQKYVEYAEQKPTNKVVIFYDSMWHS---------------------------------- 265 (402)
T ss_dssp SEEEESSSCBEESHHHHHHHHHHHHHHHHCCCCSEEEEEECCSSSH----------------------------------
T ss_pred CEEecCCcceeecCCCHHHHHHHHHHHhcCCCCCcEEEEEECCChh----------------------------------
Confidence 577787765443 3445554445444 467888887654321
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCC
Q 041485 94 DQDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
.+.+.+.+.+.+.+.+..++..-........+.+...+ +|.+|+|+..
T Consensus 266 t~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~d~ii~gsp~ 313 (402)
T 1e5d_A 266 TEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISD--AGAVIVGSPT 313 (402)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHT--CSEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHH--CCEEEEECCc
Confidence 13444445555555677666544444445555555555 8999999753
No 204
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=41.68 E-value=73 Score=20.97 Aligned_cols=42 Identities=12% Similarity=0.012 Sum_probs=26.5
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHh----CCCCEEEEe
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA----MKLDSLVMG 140 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~----~~~dlvVlg 140 (179)
..+.+.+++.|.++......+|-.+.|.+..++ .++|+||..
T Consensus 24 ~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 24 LAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp HHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 346667778898877665555555554443322 269999885
No 205
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=41.44 E-value=59 Score=19.86 Aligned_cols=69 Identities=9% Similarity=0.141 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcC-CCCEEEEcCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANA-SCPVTIVKDP 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 173 (179)
...+.+...+...|..+. .-....+..+..+...+|+|++.. - .....+ .....+-... .+||+++-..
T Consensus 15 ~~~~~l~~~L~~~g~~v~----~~~~~~~a~~~l~~~~~dlvi~d~-~-~~~~g~---~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 15 ITFLAVKNALEKDGFNVI----WAKNEQEAFTFLRREKIDLVFVDV-F-EGEESL---NLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHHHHHHHGGGTCEEE----EESSHHHHHHHHTTSCCSEEEEEC-T-TTHHHH---HHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHHHHhCCCEEE----EECCHHHHHHHHhccCCCEEEEeC-C-CCCcHH---HHHHHHHHHCCCCCEEEEECC
Confidence 333445555566676544 222345556677778899999986 3 222211 1233333333 4999988654
No 206
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=41.07 E-value=58 Score=20.33 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=30.0
Q ss_pred hHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 122 RDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 122 ~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
.++-++.+++..+|++++-..= ....+ -..-+.+++..+||+++...
T Consensus 42 g~eAl~~~~~~~~DlvllDi~m-P~~~G----~el~~~lr~~~ipvI~lTa~ 88 (123)
T 2lpm_A 42 MQEALDIARKGQFDIAIIDVNL-DGEPS----YPVADILAERNVPFIFATGY 88 (123)
T ss_dssp HHHHHHHHHHCCSSEEEECSSS-SSCCS----HHHHHHHHHTCCSSCCBCTT
T ss_pred HHHHHHHHHhCCCCEEEEecCC-CCCCH----HHHHHHHHcCCCCEEEEecC
Confidence 4445566778899999998652 22232 22234556668999988653
No 207
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=40.89 E-value=98 Score=23.02 Aligned_cols=33 Identities=6% Similarity=-0.232 Sum_probs=23.6
Q ss_pred EEEeecC-----CccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 21 IGVALDF-----SKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 21 ILv~vd~-----s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
+||..+- ++.+..++..|.+++. +++++.+-..
T Consensus 4 ~lv~~e~~~g~l~~~~~eal~aA~~La~----~V~av~~G~~ 41 (315)
T 1efv_A 4 TLVIAEHANDSLAPITLNTITAATRLGG----EVSCLVAGTK 41 (315)
T ss_dssp EEEECCEETTEECTHHHHHHHHHHTTTS----EEEEEEEESC
T ss_pred EEEEEEccCCCcCHHHHHHHHHHHHhcC----cEEEEEECCc
Confidence 6776652 4568889999988873 7887777644
No 208
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=40.87 E-value=57 Score=19.49 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=37.1
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc---CCCCEEEEcCCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN---ASCPVTIVKDPS 174 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv~~~~ 174 (179)
+.+...++..|..+.. ..+ ..+.++..++..+|++++...- +...++ ....++-.. ..+||+++....
T Consensus 16 ~~l~~~l~~~g~~v~~---~~~-~~~al~~l~~~~~dlvllD~~~-p~~~g~---~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 16 KIVSFNLKKEGYEVIE---AEN-GQIALEKLSEFTPDLIVLXIMM-PVMDGF---TVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp HHHHHHHHHTTCEEEE---ESS-HHHHHHHHTTBCCSEEEECSCC-SSSCHH---HHHHHHHTSTTTTTSCEEEEESCC
T ss_pred HHHHHHHHHCCcEEEE---eCC-HHHHHHHHHhcCCCEEEEeccC-CCCcHH---HHHHHHHhcccccCCCEEEEecCC
Confidence 3444555556765431 233 3445566677889999998652 222221 123333322 358999886543
No 209
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=40.61 E-value=93 Score=21.86 Aligned_cols=72 Identities=7% Similarity=0.111 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccCh--hHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDA--RDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.+.+.+.+.+.|..+......++. ...+++.....++|-||+...... ...-..+....+||+++-.
T Consensus 29 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~~~~ 100 (292)
T 3k4h_A 29 PEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN--------DRIIQYLHEQNFPFVLIGK 100 (292)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT--------CHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC--------hHHHHHHHHCCCCEEEECC
Confidence 466667777778888776653322322 345667777889999998543211 1123456677899999865
Q ss_pred CC
Q 041485 173 PS 174 (179)
Q Consensus 173 ~~ 174 (179)
..
T Consensus 101 ~~ 102 (292)
T 3k4h_A 101 PY 102 (292)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 210
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=40.56 E-value=76 Score=20.82 Aligned_cols=71 Identities=13% Similarity=0.269 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHh--CCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEE
Q 041485 93 LDQDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA--MKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIV 170 (179)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~--~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 170 (179)
..+.+.+.+.+.+.+.|+++++.. .+..-+|++...+ .+.|-||+..-..++-+- -....+...++|++=|
T Consensus 28 tl~di~~~l~~~a~~~g~~~~~~Q--SN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv-----AlrDAl~~v~~P~VEV 100 (146)
T 1h05_A 28 THDELVALIEREAAELGLKAVVRQ--SDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV-----ALRDACAELSAPLIEV 100 (146)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEE--CSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH-----HHHHHHHTCCSCEEEE
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEe--eCCHHHHHHHHHHhhhcCcEEEECchhhccccH-----HHHHHHHhCCCCEEEE
Confidence 346777888888888898777544 3344444433221 238999998654433221 2245677788998766
No 211
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=40.43 E-value=61 Score=19.67 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCc----ccccccccchhHHHhhc-CCCCEEEE
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLG----TIQRVLLGSVSNHVLAN-ASCPVTIV 170 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~----~~~~~~~gs~~~~il~~-~~~pVlvv 170 (179)
...+.+...+...|..+.. -....+..+..++..+|++++...-.. ....+ .....+-.. ..+||+++
T Consensus 14 ~~~~~l~~~L~~~g~~v~~----~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~---~~~~~l~~~~~~~~ii~l 86 (140)
T 2qr3_A 14 GVLTAVQLLLKNHFSKVIT----LSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGL---FWLHEIKRQYRDLPVVLF 86 (140)
T ss_dssp HHHHHHHHHHTTTSSEEEE----ECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHH---HHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHHHhCCcEEEE----eCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH---HHHHHHHhhCcCCCEEEE
Confidence 3344555566666765442 223455666777788999999865320 11111 122333333 35899888
Q ss_pred cC
Q 041485 171 KD 172 (179)
Q Consensus 171 ~~ 172 (179)
-.
T Consensus 87 s~ 88 (140)
T 2qr3_A 87 TA 88 (140)
T ss_dssp EE
T ss_pred EC
Confidence 53
No 212
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=40.30 E-value=40 Score=22.84 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=4.4
Q ss_pred EEEEEEeCC
Q 041485 49 LYIIHIKLP 57 (179)
Q Consensus 49 l~ll~v~~~ 57 (179)
+.++++.+.
T Consensus 6 mri~~iSD~ 14 (228)
T 1uf3_A 6 RYILATSNP 14 (228)
T ss_dssp CEEEEEECC
T ss_pred EEEEEEeec
Confidence 344555544
No 213
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=40.12 E-value=1.2e+02 Score=23.04 Aligned_cols=129 Identities=13% Similarity=0.129 Sum_probs=69.7
Q ss_pred CeEEEeecC-C-ccHHHHHHHHHHHhcC---CCC-EEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhh
Q 041485 19 RSIGVALDF-S-KGSKLALKWAIDNLLE---KGD-TLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVD 92 (179)
Q Consensus 19 ~~ILv~vd~-s-~~s~~al~~a~~la~~---~~~-~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (179)
++++|.+.+ + +.-..++++|.++... .+. -..++-+....+.++ ..|-..+.-......+..
T Consensus 52 ~rllvIaGPCsie~~e~aleyA~~L~~~~~~l~d~l~ivmR~yfeKPRTs--~g~kGl~~dP~ld~s~~i---------- 119 (350)
T 1n8f_A 52 DRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTT--VGWKGLINDPHMDNSFQI---------- 119 (350)
T ss_dssp CCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTTTTEEEEEECCCCCCCSS--SSCCCTTTCTTSSSCCCH----------
T ss_pred CceEEEEeCCcCCCHHHHHHHHHHHHHHHHhhccCeEEEEEeccccCcCC--cCcCCCCCCCCccccccH----------
Confidence 457776654 3 3455678888877654 333 344555555444333 223333321111111111
Q ss_pred hhHHHHHHHHHH---hhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEE
Q 041485 93 LDQDVLDMLDAA---SKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTI 169 (179)
Q Consensus 93 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlv 169 (179)
++=+..+++. ..+.|+.+-+++..-... +|+.+. +|.+-+|.+.-... .-..++..++|||.+
T Consensus 120 --~~GL~ilr~ll~~~~e~GlPv~TEvld~~~~----~~vad~-vd~~qIGAR~~esq-------~hr~~asg~~~PVg~ 185 (350)
T 1n8f_A 120 --NDGLRIARKLLLDINDSGLPAAGEFLDMITP----QYLADL-MSWGAIGARTTESQ-------VHRELASGLSCPVGF 185 (350)
T ss_dssp --HHHHHHHHHHHHHHHHTTCCEEEECCCSSTH----HHHGGG-CSEEEECTTTTTCH-------HHHHHHHTCSSCEEE
T ss_pred --HHHHHHHHHHHHHHHHhCCceEEeecCcccH----HHHhhc-CcEEEECCccccCH-------HHHHHHhcCCCeEEE
Confidence 2333334444 567899988887665443 344332 89999998742221 124567788999987
Q ss_pred EcCC
Q 041485 170 VKDP 173 (179)
Q Consensus 170 v~~~ 173 (179)
=+..
T Consensus 186 Kngt 189 (350)
T 1n8f_A 186 KNGT 189 (350)
T ss_dssp ECCT
T ss_pred ecCC
Confidence 6543
No 214
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=39.94 E-value=79 Score=20.83 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHh---CCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEE
Q 041485 94 DQDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA---MKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIV 170 (179)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~---~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 170 (179)
.+.+.+.+.+.+.+.|+++++. ..+..-+|++...+ .+.|-||+..-..++.+- -....+...++|++=|
T Consensus 26 l~di~~~l~~~a~~~g~~v~~~--QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSv-----AlrDAl~~v~~P~VEV 98 (149)
T 2uyg_A 26 LEELEALCEAWGAELGLGVVFR--QTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSY-----ALLDAIRAQPLPVVEV 98 (149)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEE--ECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCH-----HHHHHHHTSCSCEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEE--eeCCHHHHHHHHHHhccCCeeEEEEccchhccccH-----HHHHHHHhCCCCEEEE
Confidence 3577778888888888877654 45555566655443 338899998654433221 2245677788998766
No 215
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=39.80 E-value=45 Score=23.27 Aligned_cols=35 Identities=6% Similarity=-0.258 Sum_probs=27.4
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEE
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHI 54 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v 54 (179)
.++|++++.++..+.++++....+.+ .+ +++++--
T Consensus 19 ~k~IllgvTGsiaa~k~~~ll~~L~~-~g-~V~vv~T 53 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIKFGNLCHCFTE-WA-EVRAVVT 53 (209)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHHT-TS-EEEEEEC
T ss_pred CCEEEEEEeCcHHHHHHHHHHHHHhc-CC-CEEEEEc
Confidence 58999999999988888888887754 44 7766653
No 216
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=39.57 E-value=1.1e+02 Score=22.34 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
+..+.+.+.... .+.+-.-+...+..+. +.+.|++.++|.+++.........+--+=..-..|...++.||++...
T Consensus 59 ~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 136 (292)
T 3daq_A 59 LILKTVIDLVDK-RVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNV 136 (292)
T ss_dssp HHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEEC
T ss_pred HHHHHHHHHhCC-CCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEec
Confidence 444555554432 3555444433344444 446788899999888764322222211112446677888999999853
No 217
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=39.49 E-value=55 Score=18.89 Aligned_cols=68 Identities=7% Similarity=0.055 Sum_probs=37.1
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc---CCCCEEEEcCCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN---ASCPVTIVKDPS 174 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv~~~~ 174 (179)
+.+...+...|..+.. ..+ .....+..+...+|++++...-.. .... .....+-.. ..+|++++-...
T Consensus 15 ~~l~~~l~~~g~~v~~---~~~-~~~~~~~l~~~~~dlii~d~~~~~-~~~~---~~~~~l~~~~~~~~~~ii~~~~~~ 85 (119)
T 2j48_A 15 TVVCEMLTAAGFKVIW---LVD-GSTALDQLDLLQPIVILMAWPPPD-QSCL---LLLQHLREHQADPHPPLVLFLGEP 85 (119)
T ss_dssp HHHHHHHHHTTCEEEE---ESC-HHHHHHHHHHHCCSEEEEECSTTC-CTHH---HHHHHHHHTCCCSSCCCEEEESSC
T ss_pred HHHHHHHHhCCcEEEE---ecC-HHHHHHHHHhcCCCEEEEecCCCC-CCHH---HHHHHHHhccccCCCCEEEEeCCC
Confidence 3444555556665432 223 344555666678999999865322 1211 233444444 458998886543
No 218
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=39.42 E-value=1.2e+02 Score=22.66 Aligned_cols=35 Identities=20% Similarity=-0.002 Sum_probs=25.7
Q ss_pred EEEeecC-----CccHHHHHHHHHHHhcCCC-CEEEEEEEeC
Q 041485 21 IGVALDF-----SKGSKLALKWAIDNLLEKG-DTLYIIHIKL 56 (179)
Q Consensus 21 ILv~vd~-----s~~s~~al~~a~~la~~~~-~~l~ll~v~~ 56 (179)
|||..+. .+.+..++..|.+++. .+ .+++++.+-.
T Consensus 3 ilv~~e~~~g~l~~~~~eal~~A~~L~e-~g~~~V~av~~G~ 43 (320)
T 1o97_D 3 ILVIAEHRRNDLRPVSLELIGAANGLKK-SGEDKVVVAVIGS 43 (320)
T ss_dssp EEEECCEETTEECTHHHHHHHHHHHHCS-STTCEEEEEEEST
T ss_pred EEEEEeCcCCCcCHHHHHHHHHHHHHhh-CCCCcEEEEEECC
Confidence 5665542 4678999999999987 56 5888887753
No 219
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=38.92 E-value=65 Score=19.61 Aligned_cols=69 Identities=4% Similarity=0.052 Sum_probs=38.4
Q ss_pred HHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhh---cCCCCEEEEcCCC
Q 041485 98 LDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLA---NASCPVTIVKDPS 174 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~---~~~~pVlvv~~~~ 174 (179)
.+.+...+...|..+. .-....+..+.++...+|+|++...-.. .... .....+-. ...+||+++-...
T Consensus 20 ~~~l~~~L~~~g~~v~----~~~~~~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 20 RIAVKTILSDAGFHII----SADSGGQCIDLLKKGFSGVVLLDIMMPG-MDGW---DTIRAILDNSLEQGIAIVMLTAKN 91 (142)
T ss_dssp HHHHHHHHHHTTCEEE----EESSHHHHHHHHHTCCCEEEEEESCCSS-SCHH---HHHHHHHHTTCCTTEEEEEEECTT
T ss_pred HHHHHHHHHHCCeEEE----EeCCHHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhcccCCCCEEEEECCC
Confidence 3444455555565432 2233456667777788999999865322 2211 23344443 2458999886543
No 220
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=38.65 E-value=66 Score=19.56 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=35.6
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHh-CCCCEEEEecCCCcccccccccchhHHHhhcC-CCCEEEEc-CC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA-MKLDSLVMGSRGLGTIQRVLLGSVSNHVLANA-SCPVTIVK-DP 173 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~-~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~-~~ 173 (179)
+.+...+...|..+. ...+ ..+..+..+. ..+|++++...-.. ...+ .....+-... .+|++++- ..
T Consensus 29 ~~l~~~L~~~g~~v~---~~~~-~~~al~~l~~~~~~dlvilD~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~~ 98 (138)
T 2b4a_A 29 TLIQYHLNQLGAEVT---VHPS-GSAFFQHRSQLSTCDLLIVSDQLVD-LSIF---SLLDIVKEQTKQPSVLILTTGR 98 (138)
T ss_dssp HHHHHHHHHTTCEEE---EESS-HHHHHHTGGGGGSCSEEEEETTCTT-SCHH---HHHHHHTTSSSCCEEEEEESCC
T ss_pred HHHHHHHHHcCCEEE---EeCC-HHHHHHHHHhCCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEECCC
Confidence 344445555565432 1233 3445556666 78999999865321 2211 1233333333 48999886 44
No 221
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=38.41 E-value=74 Score=21.01 Aligned_cols=61 Identities=15% Similarity=0.026 Sum_probs=35.5
Q ss_pred CCceEEEEEeccC-hhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEE
Q 041485 108 KHVSVVAKLYWGD-ARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVT 168 (179)
Q Consensus 108 ~~~~~~~~~~~g~-~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVl 168 (179)
.|++++....... -...|.+.+++.++|+||=-....+...+.--|....++...-++|+.
T Consensus 56 ~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~ 117 (152)
T 1b93_A 56 TGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVA 117 (152)
T ss_dssp HCCCCEEECCGGGTHHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEE
T ss_pred hCceeEEEEecCCCCCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEE
Confidence 5777766432211 345799999999999999876521221111123344555555566664
No 222
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=38.39 E-value=1.2e+02 Score=22.58 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=36.7
Q ss_pred HHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccc--cccch-hHHHhhcCCCCEEEEcCC
Q 041485 102 DAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRV--LLGSV-SNHVLANASCPVTIVKDP 173 (179)
Q Consensus 102 ~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~--~~gs~-~~~il~~~~~pVlvv~~~ 173 (179)
...+.+.|++++... .+.. ...++ ++|.+++|...-..-... ..|+- ..-+.++..+|++++-+.
T Consensus 165 a~~L~~~gI~vtli~--Dsa~---~~~m~--~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a~~ 232 (315)
T 3ecs_A 165 AKALCHLNVPVTVVL--DAAV---GYIME--KADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAES 232 (315)
T ss_dssp HHHHHTTTCCEEEEC--GGGH---HHHGG--GCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred HHHHHHcCCCEEEEe--hhHH---HHHHH--hCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEecc
Confidence 344456788876543 2222 22233 499999998742221111 23442 344567778999998543
No 223
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=38.37 E-value=28 Score=24.99 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecC
Q 041485 98 LDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSR 142 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~ 142 (179)
.+.+++...+.+.++...+.-| ...+-+..+.+.++|.+|+|+.
T Consensus 182 I~~lr~~~~~~~~~~~I~VDGG-I~~~ti~~~~~aGAD~~V~GSa 225 (246)
T 3inp_A 182 AKEISKWISSTDRDILLEIDGG-VNPYNIAEIAVCGVNAFVAGSA 225 (246)
T ss_dssp HHHHHHHHHHHTSCCEEEEESS-CCTTTHHHHHTTTCCEEEESHH
T ss_pred HHHHHHHHHhcCCCeeEEEECC-cCHHHHHHHHHcCCCEEEEehH
Confidence 3455555555565555545444 4445566777889999999963
No 224
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=37.80 E-value=80 Score=20.64 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHh--CCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEE
Q 041485 92 DLDQDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA--MKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTI 169 (179)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~--~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlv 169 (179)
...+++.+.+.+.+.+.|+++++. ..+..-+|++...+ .+.|-||+..-..++-+- -....+...++|++=
T Consensus 25 ~tl~di~~~l~~~a~~~g~~~~~~--QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSv-----AlrDAl~~v~~P~VE 97 (143)
T 1gqo_A 25 QTLTDIETDLFQFAEALHIQLTFF--QSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSY-----AIRDAVSSISLPVVE 97 (143)
T ss_dssp CCHHHHHHHHHHHHHHHTCEEEEE--ECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH-----HHHHHHHTSCSCEEE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEE--eeCCHHHHHHHHHHhhhcCcEEEEccchhccccH-----HHHHHHHhCCCCEEE
Confidence 345677778888888888877654 44455555554332 358999998654433221 224567777889876
Q ss_pred E
Q 041485 170 V 170 (179)
Q Consensus 170 v 170 (179)
|
T Consensus 98 V 98 (143)
T 1gqo_A 98 V 98 (143)
T ss_dssp E
T ss_pred E
Confidence 6
No 225
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=37.67 E-value=1.2e+02 Score=22.38 Aligned_cols=76 Identities=9% Similarity=0.027 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHHH--HHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDKL--CEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i--~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.+.+.... .+.+-.-+.. +..+.| .+.|++.++|.+++...-.....+--+=..-..|...++.||++...
T Consensus 68 ~~v~~~~v~~~~g-rvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 145 (316)
T 3e96_A 68 KEEVRRTVEYVHG-RALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFK 145 (316)
T ss_dssp HHHHHHHHHHHTT-SSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3445555555432 3555444432 444433 46688899999998744322212111112346778888999999863
No 226
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=37.59 E-value=50 Score=22.10 Aligned_cols=40 Identities=15% Similarity=-0.079 Sum_probs=28.6
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
+.+||+.+..+..+..+++...+-+...+.++.++.+.+.
T Consensus 4 mmkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 4 KPNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred CcEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 3467666654556777788877777667888998888664
No 227
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=37.44 E-value=93 Score=23.46 Aligned_cols=70 Identities=11% Similarity=0.205 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcCCceEEEEEeccCh----hHHHHHHHHhCCCCEEE-EecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDA----RDKLCEAVEAMKLDSLV-MGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~----~~~i~~~a~~~~~dlvV-lg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
..+.+.+.+++.++++.+.+..|.+ .+.+.+.+++.++|+|| +|.-. . . ..+.-+.....+|++.||
T Consensus 46 ~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGs--v-~-----D~aK~iA~~~~~p~i~IP 117 (370)
T 1jq5_A 46 AGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGK--T-L-----DTAKAVADELDAYIVIVP 117 (370)
T ss_dssp THHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH--H-H-----HHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChH--H-H-----HHHHHHHHhcCCCEEEec
Confidence 3455566666678777544445543 34556678888999988 55221 1 1 122222233468999999
Q ss_pred CCC
Q 041485 172 DPS 174 (179)
Q Consensus 172 ~~~ 174 (179)
...
T Consensus 118 TTa 120 (370)
T 1jq5_A 118 TAA 120 (370)
T ss_dssp SSC
T ss_pred ccc
Confidence 764
No 228
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=37.31 E-value=68 Score=21.26 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHh----CCCCEEEEe
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA----MKLDSLVMG 140 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~----~~~dlvVlg 140 (179)
..+.+.+.+.|.++......+|-.+.|.+..++ .++|+||..
T Consensus 34 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 34 QLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp HHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred HHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 345555666688777665566555555544332 369999885
No 229
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=37.00 E-value=97 Score=21.05 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=27.4
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHh---CCCCEEEEe
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA---MKLDSLVMG 140 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~---~~~dlvVlg 140 (179)
..+...+++.|.++.......|-.+.|.+..++ .++|+||..
T Consensus 52 ~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVItt 96 (185)
T 3rfq_A 52 PLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSV 96 (185)
T ss_dssp HHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 456667777888877766566555555544332 469999875
No 230
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=36.98 E-value=70 Score=19.37 Aligned_cols=69 Identities=10% Similarity=0.191 Sum_probs=35.9
Q ss_pred HHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCCC
Q 041485 100 MLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
.+...+...|..+... .. ...+..+..+...+|++++...-.+....+ .....+-....+||+++-...
T Consensus 24 ~l~~~L~~~g~~v~~~--~~-~~~~a~~~~~~~~~dlii~d~~~~~~~~g~---~~~~~l~~~~~~~ii~ls~~~ 92 (140)
T 3cg0_A 24 TLRIQLESLGYDVLGV--FD-NGEEAVRCAPDLRPDIALVDIMLCGALDGV---ETAARLAAGCNLPIIFITSSQ 92 (140)
T ss_dssp HHHHHHHHHTCEEEEE--ES-SHHHHHHHHHHHCCSEEEEESSCCSSSCHH---HHHHHHHHHSCCCEEEEECCC
T ss_pred HHHHHHHHCCCeeEEE--EC-CHHHHHHHHHhCCCCEEEEecCCCCCCCHH---HHHHHHHhCCCCCEEEEecCC
Confidence 3444444446554321 22 334455566667799999986532112211 122333333569999886543
No 231
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=36.89 E-value=96 Score=20.93 Aligned_cols=72 Identities=13% Similarity=0.266 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHh--CCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEE
Q 041485 92 DLDQDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA--MKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTI 169 (179)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~--~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlv 169 (179)
...+++.+.+.+.+.+.|+++++.. .+-.-+|++...+ .+.|-||+..-..+.-+- -....+...++|++=
T Consensus 53 ~TL~dI~~~l~~~a~~~G~~l~~~Q--SN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSv-----AlrDAL~~v~~P~VE 125 (172)
T 3n8k_A 53 TTHDELVALIEREAAELGLKAVVRQ--SDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV-----ALRDACAELSAPLIE 125 (172)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEEE--CSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH-----HHHHHHTTCCSCEEE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEe--cCCHHHHHHHHHHhhhcCcEEEECcchhhhhhH-----HHHHHHHhCCCCEEE
Confidence 4456777788888888898877544 3444444443221 248999998654433221 123456677899886
Q ss_pred E
Q 041485 170 V 170 (179)
Q Consensus 170 v 170 (179)
|
T Consensus 126 V 126 (172)
T 3n8k_A 126 V 126 (172)
T ss_dssp E
T ss_pred E
Confidence 6
No 232
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=36.86 E-value=91 Score=20.69 Aligned_cols=72 Identities=15% Similarity=0.137 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHh--CCCCEEEEecCCCcccccccccchhHHHhhcCC-CCEE
Q 041485 92 DLDQDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA--MKLDSLVMGSRGLGTIQRVLLGSVSNHVLANAS-CPVT 168 (179)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~--~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~-~pVl 168 (179)
...+.+.+.+.+.+.+.|+++++.. .+..-+|++...+ .+.|-||+..-..++.+- -....+...+ +|++
T Consensus 31 ~Tl~di~~~l~~~a~~~g~~v~~~Q--SN~EGeLId~Ih~a~~~~dgiIINpgA~THtSv-----AlrDAl~~v~~~P~V 103 (156)
T 1gtz_A 31 DTLADVEALCVKAAAAHGGTVDFRQ--SNHEGELVDWIHEARLNHCGIVINPAAYSHTSV-----AILDALNTCDGLPVV 103 (156)
T ss_dssp CCHHHHHHHHHHHHHTTTCCEEEEE--CSCHHHHHHHHHHHHHHCSEEEEECTTHHHHCH-----HHHHHHHTSTTCCEE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEe--eCCHHHHHHHHHHhhhcCcEEEECchhhccccH-----HHHHHHHhcCCCCEE
Confidence 4456788888888888898877644 3334344433221 238999998654443221 2244566667 8887
Q ss_pred EE
Q 041485 169 IV 170 (179)
Q Consensus 169 vv 170 (179)
=|
T Consensus 104 EV 105 (156)
T 1gtz_A 104 EV 105 (156)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 233
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=36.77 E-value=57 Score=23.25 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCCC
Q 041485 124 KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 124 ~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
..++.+.+.+.|+|.+|-+.--..... -..... ++..+.||++.|...
T Consensus 27 ~~l~~~~~~GtDaI~vGgs~gvt~~~~--~~~v~~-ik~~~~Piil~p~~~ 74 (235)
T 3w01_A 27 DDLDAICMSQTDAIMIGGTDDVTEDNV--IHLMSK-IRRYPLPLVLEISNI 74 (235)
T ss_dssp HHHHHHHTSSCSEEEECCSSCCCHHHH--HHHHHH-HTTSCSCEEEECCCS
T ss_pred HHHHHHHHcCCCEEEECCcCCcCHHHH--HHHHHH-hcCcCCCEEEecCCH
Confidence 345556678899999997532222221 123333 444789999988753
No 234
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=36.28 E-value=52 Score=22.12 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=30.4
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEe
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIK 55 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~ 55 (179)
.+.++|.++.|..+...++ +++.|+..|+++..+.-.
T Consensus 113 ~~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 113 PGDVLLAISTSGNSANVIQ-AIQAAHDREMLVVALTGR 149 (199)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECT
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEECC
Confidence 6889999999999988776 567798999988777553
No 235
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=36.24 E-value=79 Score=19.78 Aligned_cols=71 Identities=7% Similarity=0.022 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc---CCCCEEEEcC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN---ASCPVTIVKD 172 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv~~ 172 (179)
...+.+...++..|..+.. -....+.++.+++..+|+|++...-.. ...+ .....+-.. ..+||+++-.
T Consensus 18 ~~~~~l~~~L~~~g~~v~~----~~~~~~al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~lr~~~~~~~~pii~~s~ 89 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQTEH----VRNGREAVRFLSLTRPDLIISDVLMPE-MDGY---ALCRWLKGQPDLRTIPVILLTI 89 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEE----ESSHHHHHHHHTTCCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTSCEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEE----eCCHHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCcCCCCEEEEEC
Confidence 3444555666666765432 223455566777888999999865322 2211 123333333 4589998865
Q ss_pred CC
Q 041485 173 PS 174 (179)
Q Consensus 173 ~~ 174 (179)
..
T Consensus 90 ~~ 91 (154)
T 3gt7_A 90 LS 91 (154)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 236
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=35.42 E-value=29 Score=25.75 Aligned_cols=13 Identities=23% Similarity=0.064 Sum_probs=9.8
Q ss_pred CCEEEEEEEeCCC
Q 041485 46 GDTLYIIHIKLPQ 58 (179)
Q Consensus 46 ~~~l~ll~v~~~~ 58 (179)
...+.++|+.+.-
T Consensus 16 ~~~mrilh~SD~H 28 (336)
T 2q8u_A 16 LKELKILHTSDWH 28 (336)
T ss_dssp CCEEEEEEEECCC
T ss_pred cCceEEEEECccc
Confidence 3468889998875
No 237
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=35.09 E-value=64 Score=19.62 Aligned_cols=40 Identities=8% Similarity=-0.087 Sum_probs=29.3
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
+++||++....-.+.-.++...+.++..+-++.+-+....
T Consensus 3 mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~ 42 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPET 42 (106)
T ss_dssp CEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSS
T ss_pred CcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHH
Confidence 5778888876555557788888888888888776666444
No 238
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=34.96 E-value=93 Score=25.44 Aligned_cols=69 Identities=10% Similarity=0.097 Sum_probs=42.8
Q ss_pred HHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhh-cCCCCEEEEcC
Q 041485 101 LDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLA-NASCPVTIVKD 172 (179)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~-~~~~pVlvv~~ 172 (179)
+...++..|.++.. +...-+.+.|++.+++.++|+|.++....+.... +..+...+-+ ...+||++-..
T Consensus 118 va~~L~~~G~eVi~-LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~--m~~~i~~Lr~~g~~i~ViVGGa 187 (579)
T 3bul_A 118 VGVVLQCNNYEIVD-LGVMVPAEKILRTAKEVNADLIGLSGLITPSLDE--MVNVAKEMERQGFTIPLLIGGA 187 (579)
T ss_dssp HHHHHHTTTCEEEE-CCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHH--HHHHHHHHHHTTCCSCEEEEST
T ss_pred HHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHH--HHHHHHHHHHcCCCCeEEEEcc
Confidence 44566777877553 2234789999999999999999998754332221 2223333322 23488877543
No 239
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=34.82 E-value=1.2e+02 Score=21.37 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhcC-CceEEEEEec---cChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEE
Q 041485 95 QDVLDMLDAASKQK-HVSVVAKLYW---GDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVT 168 (179)
Q Consensus 95 ~~~~~~~~~~~~~~-~~~~~~~~~~---g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVl 168 (179)
.++.+.+.+.+.+. |..+...... +++. ..+++.+...++|-||+.......... . -.-+....+||+
T Consensus 25 ~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~-----~-~~~~~~~~iPvV 98 (304)
T 3gbv_A 25 TDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKG-----F-TDALNELGIPYI 98 (304)
T ss_dssp HHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHH-----H-HHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHH-----H-HHHHHHCCCeEE
Confidence 35666677777766 6666654432 3443 344566777889999997543221111 1 223455689999
Q ss_pred EEcCCC
Q 041485 169 IVKDPS 174 (179)
Q Consensus 169 vv~~~~ 174 (179)
++....
T Consensus 99 ~~~~~~ 104 (304)
T 3gbv_A 99 YIDSQI 104 (304)
T ss_dssp EESSCC
T ss_pred EEeCCC
Confidence 986543
No 240
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=34.80 E-value=45 Score=21.53 Aligned_cols=61 Identities=10% Similarity=-0.012 Sum_probs=34.3
Q ss_pred CCceEEEEEecc-ChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEE
Q 041485 108 KHVSVVAKLYWG-DARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVT 168 (179)
Q Consensus 108 ~~~~~~~~~~~g-~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVl 168 (179)
.|++++...... .-...|.+.+++.++|+||=-....+...+.--+....+....-.+|+.
T Consensus 48 ~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~ 109 (134)
T 2xw6_A 48 TGLTVEKLLSGPLGGDQQMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLA 109 (134)
T ss_dssp HCCCCEECSCGGGTHHHHHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEE
T ss_pred hCceEEEEEecCCCCcchHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeE
Confidence 477776543211 2345799999999999999876521111111123334444444456654
No 241
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=34.58 E-value=1e+02 Score=20.45 Aligned_cols=71 Identities=11% Similarity=0.175 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHh--CCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEE
Q 041485 93 LDQDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA--MKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIV 170 (179)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~--~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 170 (179)
..+.+.+.+.+.+.+.|+++++ ...+..-+|++...+ .+.|-||+..-..++.+- -....+...++|++=|
T Consensus 27 Tl~di~~~l~~~a~~~g~~l~~--~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSv-----AlrDAl~~v~~P~VEV 99 (154)
T 1uqr_A 27 TLSDIEQHLQQSAQAQGYELDY--FQANGEESLINRIHQAFQNTDFIIINPGAFTHTSV-----AIRDALLAVSIPFIEV 99 (154)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEE--EECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCH-----HHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHHHHHCCCEEEE--EeeCCHHHHHHHHHHhhhcCcEEEECcchhccchH-----HHHHHHHhCCCCEEEE
Confidence 3467777888888888987764 445556666665444 358999998654433221 2234566667888766
No 242
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=34.56 E-value=67 Score=23.19 Aligned_cols=35 Identities=3% Similarity=0.093 Sum_probs=27.5
Q ss_pred CeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCC
Q 041485 19 RSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQ 58 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 58 (179)
.+|+|+++ ...|...+..+.++ +.++.++|+....
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~----~~~i~vv~iDtg~ 89 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKL----NRNVKVFSLDTGR 89 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHH----CTTCCEEEECCSC
T ss_pred CCEEEEee-cHHHHHHHHHHHHh----CCCceEEEEeCCC
Confidence 67999999 99999888888775 3457788886554
No 243
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=34.18 E-value=94 Score=22.10 Aligned_cols=46 Identities=13% Similarity=-0.192 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccCh-----------hHHHHHHHHhCCCCEEEEecCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDA-----------RDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~-----------~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
.+.+.+.+.+.+.|.+++..-...-+ ...+.+.+.+ +|.||+++.-
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~--AD~iI~~sP~ 108 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIW--SEGQVWVSPE 108 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHH--CSEEEEEEEC
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHH--CCEEEEEeCC
Confidence 44455555555567776654332222 4666677777 9999999854
No 244
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=34.17 E-value=61 Score=23.06 Aligned_cols=48 Identities=15% Similarity=0.249 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 123 DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 123 ~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
..+++...+.++|+|.+|-+.-......+ ....++ +..++|+++.+-.
T Consensus 23 ~~~~~~l~~~GaD~IelG~S~g~t~~~~~--~~v~~i-r~~~~Pivl~~y~ 70 (234)
T 2f6u_A 23 DEIIKAVADSGTDAVMISGTQNVTYEKAR--TLIEKV-SQYGLPIVVEPSD 70 (234)
T ss_dssp HHHHHHHHTTTCSEEEECCCTTCCHHHHH--HHHHHH-TTSCCCEEECCSS
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHHH--HHHHHh-cCCCCCEEEecCC
Confidence 45677788889999999974222222222 233333 4467999988754
No 245
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=34.15 E-value=87 Score=19.65 Aligned_cols=71 Identities=6% Similarity=0.104 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhC--CCCEEEEecCCCcccccccccchhHHHhhcC-CCCEEEEcC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAM--KLDSLVMGSRGLGTIQRVLLGSVSNHVLANA-SCPVTIVKD 172 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~--~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~ 172 (179)
...+.+...+.+.|..+... ..+. .+.++.+.+. .+|+|++...-.. ...+ .....+-... .+||+++-.
T Consensus 47 ~~~~~l~~~L~~~g~~v~~~--~~~~-~~al~~l~~~~~~~dliilD~~l~~-~~g~---~~~~~lr~~~~~~~ii~ls~ 119 (157)
T 3hzh_A 47 FTVKQLTQIFTSEGFNIIDT--AADG-EEAVIKYKNHYPNIDIVTLXITMPK-MDGI---TCLSNIMEFDKNARVIMISA 119 (157)
T ss_dssp HHHHHHHHHHHHTTCEEEEE--ESSH-HHHHHHHHHHGGGCCEEEECSSCSS-SCHH---HHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHHHHHHhCCCeEEEE--ECCH-HHHHHHHHhcCCCCCEEEEeccCCC-ccHH---HHHHHHHhhCCCCcEEEEec
Confidence 33444555556667655312 2333 3444444555 6899999865322 2211 1233343333 489988865
Q ss_pred C
Q 041485 173 P 173 (179)
Q Consensus 173 ~ 173 (179)
.
T Consensus 120 ~ 120 (157)
T 3hzh_A 120 L 120 (157)
T ss_dssp C
T ss_pred c
Confidence 4
No 246
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=34.10 E-value=67 Score=22.77 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCCC
Q 041485 124 KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 124 ~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
..++.+.+.+.|+|++|-+..-..... -..... ++..+.||++.|...
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~~~~--~~~v~~-ik~~~~Pvvlfp~~~ 69 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTEDNV--LRMMSK-VRRFLVPCVLEVSAI 69 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCHHHH--HHHHHH-HTTSSSCEEEECSCG
T ss_pred HHHHHHHHcCCCEEEECCcCCCCHHHH--HHHHHH-hhccCCCEEEeCCCH
Confidence 345555678899999997532222221 123333 444789999998653
No 247
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=34.02 E-value=81 Score=23.74 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=28.5
Q ss_pred CeEEEeecCCccHHHHHHHHHHH---hcCCCCEEEEEEE
Q 041485 19 RSIGVALDFSKGSKLALKWAIDN---LLEKGDTLYIIHI 54 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~l---a~~~~~~l~ll~v 54 (179)
++|+++.|++....+|...+.+. ....+..+.++..
T Consensus 207 ~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~l 245 (338)
T 1dd9_A 207 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFL 245 (338)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEEE
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 78999999999999999998887 3345666666544
No 248
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=33.71 E-value=36 Score=25.64 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=30.2
Q ss_pred CeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEE
Q 041485 19 RSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIH 53 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~ 53 (179)
++|+++.|++.....|...+++.....+..+.++.
T Consensus 196 ~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~~ 230 (329)
T 4edg_A 196 SNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQ 230 (329)
T ss_dssp SEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 78999999999999999999998887777776653
No 249
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=33.64 E-value=1.2e+02 Score=21.17 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEe--ccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHVSVVAKLY--WGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~--~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
.+.+.+.+.+++.|.++..... .+++. ...++.....++|-||+........... -+.+....+||+++.
T Consensus 24 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~------~~~~~~~~iPvV~~~ 97 (289)
T 3brs_A 24 VLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDA------AKEIKDAGIKLIVID 97 (289)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHH------HTTTGGGTCEEEEES
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHH------HHHHHHCCCcEEEEC
Confidence 4555666666667877665433 23433 3455556667899999865432211111 112344579999885
Q ss_pred CC
Q 041485 172 DP 173 (179)
Q Consensus 172 ~~ 173 (179)
..
T Consensus 98 ~~ 99 (289)
T 3brs_A 98 SG 99 (289)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 250
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=33.45 E-value=1.1e+02 Score=20.75 Aligned_cols=45 Identities=7% Similarity=-0.103 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEec-cChhHHHHHHHHhCCCCEEEEecC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYW-GDARDKLCEAVEAMKLDSLVMGSR 142 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dlvVlg~~ 142 (179)
.+.+.+.+.+++.+.+++..-.. ++....+.+...+ +|.||+++.
T Consensus 34 ~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~--AD~iV~~~P 79 (204)
T 2amj_A 34 TLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLW--ADVVIWQMP 79 (204)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHH--CSEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHh--CCEEEEECC
Confidence 45555666666667777765443 4456667777777 999999975
No 251
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=33.41 E-value=1.3e+02 Score=21.33 Aligned_cols=68 Identities=9% Similarity=0.149 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
++.+.+.+.+.+.|..+......++.. ..+++.....++|-||+....... . ...+....+||+++-.
T Consensus 31 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~---~------~~~~~~~~iPvV~~~~ 100 (301)
T 3miz_A 31 DIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRI---V------DPESGDVSIPTVMINC 100 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE---C------CCCCTTCCCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCccH---H------HHHHHhCCCCEEEECC
Confidence 555666777778888777655444443 456677777889999986543211 1 1234566799988853
No 252
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=33.20 E-value=1.6e+02 Score=22.25 Aligned_cols=30 Identities=23% Similarity=0.053 Sum_probs=23.6
Q ss_pred CccHHHHHHHHHHHhcCC-CCEEEEEEEeCC
Q 041485 28 SKGSKLALKWAIDNLLEK-GDTLYIIHIKLP 57 (179)
Q Consensus 28 s~~s~~al~~a~~la~~~-~~~l~ll~v~~~ 57 (179)
...+.+.+++|+++|++. +.+++++|=...
T Consensus 143 ~~~~eRiar~AF~~A~~r~rkkvt~v~KaNv 173 (333)
T 1x0l_A 143 KKASERIGRAALRIAEGRPRKTLHIAHKANV 173 (333)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEecCcc
Confidence 345788999999999997 668888875444
No 253
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=33.02 E-value=1.4e+02 Score=21.69 Aligned_cols=65 Identities=11% Similarity=0.157 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEEecc-ChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWG-DARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
.++.+.+.+.+.+.|..+......+ .....+++.....++|-||+... . ..+....+||+++...
T Consensus 80 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~----~----------~~~~~~~iPvV~~~~~ 145 (333)
T 3jvd_A 80 SESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV----V----------GSIAPEGIPMVQLTRG 145 (333)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC----T----------TCCC-CCSCEEEECC-
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch----H----------HHHhhCCCCEEEECcc
Confidence 3566666677777787766644333 11234556666678999998654 1 1234557888888543
No 254
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=33.00 E-value=64 Score=20.79 Aligned_cols=62 Identities=10% Similarity=0.057 Sum_probs=36.3
Q ss_pred hcCCceEEEEEec--c-C--hhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEE
Q 041485 106 KQKHVSVVAKLYW--G-D--ARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTI 169 (179)
Q Consensus 106 ~~~~~~~~~~~~~--g-~--~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlv 169 (179)
++.|++++..... | + ....|.+..++.++|+||=-..+. ... .--|....+..-.-.+|++.
T Consensus 64 ~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~~-~~~-~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 64 NANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNN-TKF-VHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp HHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCCC-GGG-HHHHHHHHHHHHHTTCCEEC
T ss_pred HHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCCC-CcC-CccHHHHHHHHHHhCCCeEc
Confidence 4567777654322 2 2 004699999999999999866542 111 12244445555556677653
No 255
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=32.85 E-value=1.3e+02 Score=21.34 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccCh--hHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDA--RDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.+.+.+.+.+.|..+......++. ...+++.....++|-||+....... ..-..+....+||+++..
T Consensus 43 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--------~~~~~l~~~~iPvV~i~~ 114 (305)
T 3huu_A 43 SDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD--------PIEHLLNEFKVPYLIVGK 114 (305)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC--------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc--------HHHHHHHHcCCCEEEECC
Confidence 456666777777778776653333332 3456777788899999986432211 112345667899999865
Q ss_pred CC
Q 041485 173 PS 174 (179)
Q Consensus 173 ~~ 174 (179)
..
T Consensus 115 ~~ 116 (305)
T 3huu_A 115 SL 116 (305)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 256
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=32.76 E-value=1.9e+02 Score=23.17 Aligned_cols=28 Identities=29% Similarity=0.220 Sum_probs=22.2
Q ss_pred EeccChhHHHHHHHHhCCCCEEEEecCC
Q 041485 116 LYWGDARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 116 ~~~g~~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
+..+.-...+.+.+++.++||++-++++
T Consensus 421 v~~~~D~~~l~~~i~~~~pDLlig~s~~ 448 (523)
T 3u7q_B 421 VYIGKDLWHLRSLVFTDKPDFMIGNSYG 448 (523)
T ss_dssp EEESCCHHHHHHHHHHTCCSEEEECTTH
T ss_pred EEECCCHHHHHHHHHhcCCCEEEECccH
Confidence 4456667888899999999999887654
No 257
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=32.63 E-value=1.2e+02 Score=20.99 Aligned_cols=32 Identities=31% Similarity=0.319 Sum_probs=20.0
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEE
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHI 54 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v 54 (179)
..++.++.|+... ..+++.+-++ +..+..+++
T Consensus 5 ~~~livAlD~~~~-~~a~~~~~~~----~~~~~~ikv 36 (221)
T 3exr_A 5 LPNLQVALDHSNL-KGAITAAVSV----GNEVDVIEA 36 (221)
T ss_dssp CCEEEEEECCSSH-HHHHHHHHHH----GGGCSEEEE
T ss_pred CCCEEEEeCCCCH-HHHHHHHHhh----CCCceEEEE
Confidence 4679999999764 3456665554 333445566
No 258
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=32.48 E-value=1.3e+02 Score=21.09 Aligned_cols=77 Identities=8% Similarity=0.082 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.+.+.+.+.+.|.++......++.. ...++.....++|-||+.......... ....-.-+....+||+++-.
T Consensus 31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~---~~~~~~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 31 PSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTP---NIGYYLNLEKNGIPFAMINA 107 (298)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCT---THHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCC---cHHHHHHHHhcCCCEEEEec
Confidence 3566667777788888877655455444 345566667889999996543221100 00112345567899999865
Q ss_pred CC
Q 041485 173 PS 174 (179)
Q Consensus 173 ~~ 174 (179)
..
T Consensus 108 ~~ 109 (298)
T 3tb6_A 108 SY 109 (298)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 259
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=32.36 E-value=84 Score=22.16 Aligned_cols=58 Identities=9% Similarity=-0.002 Sum_probs=35.4
Q ss_pred HHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhH
Q 041485 98 LDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSN 157 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~ 157 (179)
...+.+.+++.|..+-..+..+.+.+.+..+... +|+|.+-+-..+...+.|..+..+
T Consensus 95 ~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~--~D~VlvmsV~pGfggQ~f~~~~l~ 152 (231)
T 3ctl_A 95 AFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHK--ADKITVMTVDPGFAGQPFIPEMLD 152 (231)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGG--CSEEEEESSCTTCSSCCCCTTHHH
T ss_pred HHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhc--CCEEEEeeeccCcCCccccHHHHH
Confidence 3455566667787777666567777777777665 888865544444444445444333
No 260
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=32.20 E-value=1.3e+02 Score=21.07 Aligned_cols=72 Identities=13% Similarity=0.036 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhH--HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARD--KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
++.+.+.+.+.+.|.++.+....+++.. ..++.....++|-||+.......... . -+.+....+||+++...
T Consensus 19 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~-----~-~~~~~~~~iPvV~~~~~ 92 (290)
T 2fn9_A 19 VLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIA-----N-VKRAKEAGIPVFCVDRG 92 (290)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHH-----H-HHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHH-----H-HHHHHHCCCeEEEEecC
Confidence 5556666667777887765444445543 34555556789999886432221111 1 12345578999988643
No 261
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=31.90 E-value=89 Score=19.08 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhh---cCCCCEEEEcC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLA---NASCPVTIVKD 172 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~---~~~~pVlvv~~ 172 (179)
...+.+...+...+..+.+.. -....+..+.+....+|+|++...-. ....+ .....+-. ...+||+++-.
T Consensus 16 ~~~~~l~~~L~~~~~~~~v~~--~~~~~~a~~~l~~~~~dlii~D~~l~-~~~g~---~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 16 DDIALIRRVLDRKDIHCQLEF--VDNGAKALYQVQQAKYDLIILDIGLP-IANGF---EVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE--ESSHHHHHHHHTTCCCSEEEECTTCG-GGCHH---HHHHHHHSSSTTTTCCEEEEET
T ss_pred HHHHHHHHHHHhcCCCeeEEE--ECCHHHHHHHhhcCCCCEEEEeCCCC-CCCHH---HHHHHHHhcccccCCCEEEEeC
Confidence 334455566666666544322 23344556667778899999986532 22211 12333333 24589999865
Q ss_pred C
Q 041485 173 P 173 (179)
Q Consensus 173 ~ 173 (179)
.
T Consensus 90 ~ 90 (144)
T 3kht_A 90 N 90 (144)
T ss_dssp T
T ss_pred C
Confidence 4
No 262
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=31.80 E-value=79 Score=22.63 Aligned_cols=58 Identities=14% Similarity=-0.003 Sum_probs=33.7
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHH
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNH 158 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~ 158 (179)
....+..++.|..+-..+..+.+.+.+..+... .|+|.+.+-..+...+.|..+..++
T Consensus 124 ~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~--vD~VlvMsV~PGfgGQ~fi~~~l~K 181 (246)
T 3inp_A 124 DRSLQLIKSFGIQAGLALNPATGIDCLKYVESN--IDRVLIMSVNPGFGGQKFIPAMLDK 181 (246)
T ss_dssp HHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGG--CSEEEEECSCTTC--CCCCTTHHHH
T ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhc--CCEEEEeeecCCCCCcccchHHHHH
Confidence 344455566777766666556777777666665 7888776544444444455544433
No 263
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=31.44 E-value=83 Score=18.57 Aligned_cols=68 Identities=7% Similarity=0.070 Sum_probs=35.9
Q ss_pred HHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhh-cCCCCEEEEcCC
Q 041485 98 LDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLA-NASCPVTIVKDP 173 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~-~~~~pVlvv~~~ 173 (179)
.+.+...+...|..+.. ..+ ..+.....+...+|++++...-. ...++ .....+-. ...+|++++-..
T Consensus 16 ~~~l~~~l~~~~~~v~~---~~~-~~~a~~~~~~~~~dlvl~D~~l~-~~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1srr_A 16 RILLNEVFNKEGYQTFQ---AAN-GLQALDIVTKERPDLVLLDMKIP-GMDGI---EILKRMKVIDENIRVIIMTAY 84 (124)
T ss_dssp HHHHHHHHHTTTCEEEE---ESS-HHHHHHHHHHHCCSEEEEESCCT-TCCHH---HHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHHHHHHCCcEEEE---eCC-HHHHHHHHhccCCCEEEEecCCC-CCCHH---HHHHHHHHhCCCCCEEEEEcc
Confidence 33444555555665431 223 34445555667799999986532 22211 12233333 235899888543
No 264
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=31.39 E-value=1.4e+02 Score=21.13 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccCh--hHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDA--RDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.+.+.+.+.+.|..+......++. ...+++.....++|-||+...... ......+....+||+++..
T Consensus 28 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~--------~~~~~~l~~~~iPvV~i~~ 99 (295)
T 3hcw_A 28 INVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN--------DPIKQMLIDESMPFIVIGK 99 (295)
T ss_dssp HHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT--------CHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC--------hHHHHHHHhCCCCEEEECC
Confidence 466777778888888877643333322 345677778889999998643221 1123346677899999865
Q ss_pred CC
Q 041485 173 PS 174 (179)
Q Consensus 173 ~~ 174 (179)
..
T Consensus 100 ~~ 101 (295)
T 3hcw_A 100 PT 101 (295)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 265
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=31.37 E-value=90 Score=18.95 Aligned_cols=49 Identities=6% Similarity=0.130 Sum_probs=27.2
Q ss_pred hHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc---CCCCEEEEcCCC
Q 041485 122 RDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN---ASCPVTIVKDPS 174 (179)
Q Consensus 122 ~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv~~~~ 174 (179)
..+.++.+++..+|+|++...-. ....+ .....+-.. ..+||+++-...
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l~-~~~g~---~~~~~l~~~~~~~~~~ii~~s~~~ 86 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVILDMDII-GENSP---NLCLKLKRSKGLKNVPLILLFSSE 86 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC----------CHHHHHHTSTTCTTCCEEEEECC-
T ss_pred HHHHHHHHhcCCCCEEEEeCCCC-CCcHH---HHHHHHHcCcccCCCCEEEEecCC
Confidence 44455566667899999986532 11211 233444444 458999886543
No 266
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=31.28 E-value=94 Score=20.88 Aligned_cols=45 Identities=13% Similarity=-0.028 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHh--CCCCEEEEe
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA--MKLDSLVMG 140 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~--~~~dlvVlg 140 (179)
.....+.+.+.+.|+++......+|-.+.|.+..++ .++|+||..
T Consensus 23 tN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVitt 69 (172)
T 3kbq_A 23 TNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSS 69 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEc
Confidence 334456677778899887766666555555543222 138999875
No 267
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=31.25 E-value=1.8e+02 Score=22.31 Aligned_cols=65 Identities=8% Similarity=0.116 Sum_probs=38.5
Q ss_pred HHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccc--cccch-hHHHhhcCCCCEEEEcC
Q 041485 103 AASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRV--LLGSV-SNHVLANASCPVTIVKD 172 (179)
Q Consensus 103 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~--~~gs~-~~~il~~~~~pVlvv~~ 172 (179)
..+.+.|++++... . ..+...+++.++|.|++|...-..-... -.|+- ..-+.++..+|++++-+
T Consensus 227 ~eL~~~GIpvtlI~--D---sa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap 294 (374)
T 2yvk_A 227 WELMQGGIDVTLIT--D---SMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAP 294 (374)
T ss_dssp HHHHTTTCEEEEEC--G---GGHHHHHHHTTCCEEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHcCCCEEEEe--h---hHHHHHhhhcCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecc
Confidence 34456788887543 2 2334456667899999998742211111 23443 33345666799999844
No 268
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=31.23 E-value=1.7e+02 Score=22.12 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=38.6
Q ss_pred HHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccc--cccchh-HHHhhcCCCCEEEEcC
Q 041485 103 AASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRV--LLGSVS-NHVLANASCPVTIVKD 172 (179)
Q Consensus 103 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~--~~gs~~-~~il~~~~~pVlvv~~ 172 (179)
..+.+.|++++... . ..+...+++.++|.|++|...-..-... -.|+-. .-+.++-.+|++++-+
T Consensus 202 ~eL~~~GI~vtlI~--D---sa~~~~M~~~~Vd~VivGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 202 WELMKDGIEVYVIT--D---NMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAP 269 (347)
T ss_dssp HHHHTTTCEEEEEC--G---GGHHHHHHTTCCSEEEECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHhCCCCEEEEe--h---hHHHHHhhcCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecc
Confidence 34456788887543 2 2334456667899999998742221111 234433 3345666799999843
No 269
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=31.20 E-value=93 Score=20.51 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=23.0
Q ss_pred HHHHH----hhcCCceEEEEEeccChhHHHHHHHHh---CCCCEEEEe
Q 041485 100 MLDAA----SKQKHVSVVAKLYWGDARDKLCEAVEA---MKLDSLVMG 140 (179)
Q Consensus 100 ~~~~~----~~~~~~~~~~~~~~g~~~~~i~~~a~~---~~~dlvVlg 140 (179)
.+.+. +++.|.++......+|-.+.|.+..++ .++|+||..
T Consensus 29 ~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVitt 76 (167)
T 2g2c_A 29 LLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITA 76 (167)
T ss_dssp HHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 35555 667788776655556555555544333 259999885
No 270
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=31.14 E-value=1.4e+02 Score=21.00 Aligned_cols=55 Identities=5% Similarity=0.047 Sum_probs=36.3
Q ss_pred HhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHH
Q 041485 104 ASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNH 158 (179)
Q Consensus 104 ~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~ 158 (179)
..++.|..+-..+..+.+.+.+..+..-..+|+|.+.+-..+...+.|..+..++
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~k 163 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGK 163 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHH
Confidence 5567787776666556777777777762249999888766555555555554443
No 271
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=31.05 E-value=1.2e+02 Score=20.17 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=26.1
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHH----HHhCCCCEEEEe
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEA----VEAMKLDSLVMG 140 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~----a~~~~~dlvVlg 140 (179)
..+.+.+.+.|.++......+|-.+.|.+. +++.++|+||..
T Consensus 31 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 31 HYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 345666677788877665556555554443 332359999885
No 272
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=30.94 E-value=1.4e+02 Score=20.99 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccCh--hHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDA--RDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.+.+.+.+++.|..+......+++ ...+++.....++|-||+....... .. -..+....+||+++..
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~-~~~l~~~~iPvV~~~~ 95 (287)
T 3bbl_A 24 DQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYND-------PR-VQFLLKQKFPFVAFGR 95 (287)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTC-------HH-HHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCCc-------HH-HHHHHhcCCCEEEECC
Confidence 355666667777778776543322333 3456667777889999986543211 11 1234557899998864
Q ss_pred C
Q 041485 173 P 173 (179)
Q Consensus 173 ~ 173 (179)
.
T Consensus 96 ~ 96 (287)
T 3bbl_A 96 S 96 (287)
T ss_dssp C
T ss_pred c
Confidence 3
No 273
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=30.94 E-value=96 Score=19.17 Aligned_cols=73 Identities=8% Similarity=0.005 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcC-CCCEEEEcCCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANA-SCPVTIVKDPS 174 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~~ 174 (179)
...+.+...+...+-.+.+ ..-+...+..+.++...+|+|++...-. ....+ .....+-... .+||+++-...
T Consensus 31 ~~~~~l~~~L~~~~~~~~v--~~~~~~~~al~~l~~~~~dlii~D~~l~-~~~g~---~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 31 MLRDAMCQLLTLQPDVESV--LQAKNGQEAIQLLEKESVDIAILDVEMP-VKTGL---EVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp HHHHHHHHHHHTSTTEEEE--EEESSHHHHHHHHTTSCCSEEEECSSCS-SSCHH---HHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHHHHHHhCCCcEEE--EEECCHHHHHHHhhccCCCEEEEeCCCC-CCcHH---HHHHHHHHhCCCCeEEEEeCCC
Confidence 3344455555555532222 2223445566777888899999986532 22211 1233444333 48998886543
No 274
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=30.90 E-value=1.5e+02 Score=21.32 Aligned_cols=72 Identities=7% Similarity=-0.023 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCCceEEEE-EeccChhH--HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 96 DVLDMLDAASKQKHVSVVAK-LYWGDARD--KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~--~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+.+.+.+.+++.|+++... ...+++.. ..++.....++|.||+......... .. -+.+....+||+.+..
T Consensus 20 ~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~-----~~-~~~a~~~gipvV~~d~ 93 (316)
T 1tjy_A 20 SGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLC-----PA-LKRAMQRGVKILTWDS 93 (316)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTH-----HH-HHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-----HH-HHHHHHCcCEEEEecC
Confidence 44445555566667666543 12345543 3345555678999998755332211 11 2235567899999854
Q ss_pred C
Q 041485 173 P 173 (179)
Q Consensus 173 ~ 173 (179)
.
T Consensus 94 ~ 94 (316)
T 1tjy_A 94 D 94 (316)
T ss_dssp C
T ss_pred C
Confidence 3
No 275
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=30.80 E-value=29 Score=21.55 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=24.9
Q ss_pred CCeEEEeecCCccH----HHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 18 NRSIGVALDFSKGS----KLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 18 ~~~ILv~vd~s~~s----~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
||++++.+..++++ ..+++.|...+. .+-++.++...+.
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a~a~~a-~~~~v~vff~~DG 43 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSA-LTDDLAVFFIADG 43 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHT-TCSCEEEEECGGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHh-CCCCEEEEEehHH
Confidence 46789999876654 556776666543 3456766665543
No 276
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=30.53 E-value=78 Score=23.61 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=30.5
Q ss_pred ChhHHHHHHHHhCCCCEEEEecCC-Ccccc-cccccchhHHHhhcCCCCEEEEcC
Q 041485 120 DARDKLCEAVEAMKLDSLVMGSRG-LGTIQ-RVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 120 ~~~~~i~~~a~~~~~dlvVlg~~~-~~~~~-~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+..+.++.+++ +|+||+|..+ .+... .++...+.+. ++.+ |++.|.+
T Consensus 172 ~a~p~vl~AI~~--AD~IvlgPGS~~TSI~P~Llv~gi~~A-l~~s--~kV~v~n 221 (311)
T 3c3d_A 172 SISPKVLEAFEK--EENILIGPSNPITSIGPIISLPGMREL-LKKK--KVVAVSP 221 (311)
T ss_dssp CCCHHHHHHHHH--CCEEEECSSCTTTTSHHHHHSTTHHHH-HHTS--EEEEECC
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHHhhhcCchhHHHH-HHcC--CEEEEcc
Confidence 456788888888 9999999763 22222 2334445554 5555 7776654
No 277
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=30.40 E-value=74 Score=21.21 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=29.8
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEe
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIK 55 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~ 55 (179)
.+.++|.++.|.++...++ +++.|+..|+++..+.-.
T Consensus 109 ~~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 109 AGDVLLAISTRGNSRDIVK-AVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECT
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCC
Confidence 6889999999999988765 556788899988777553
No 278
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=29.95 E-value=61 Score=25.00 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=30.0
Q ss_pred CeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEE
Q 041485 19 RSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIH 53 (179)
Q Consensus 19 ~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~ 53 (179)
++|+++.|++.....|...+++.....+..+.++.
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~~~v~~ 322 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPVY 322 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 78999999999999999998888877777777653
No 279
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=29.73 E-value=92 Score=21.10 Aligned_cols=68 Identities=10% Similarity=-0.006 Sum_probs=36.8
Q ss_pred HHHHHhh-cCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhh--cCCCCEEEEcCC
Q 041485 100 MLDAASK-QKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLA--NASCPVTIVKDP 173 (179)
Q Consensus 100 ~~~~~~~-~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~--~~~~pVlvv~~~ 173 (179)
.+...++ ..+..+.. ...+..+.+...++...+|+|++...-. ...++ .....+-. ...+||+++-..
T Consensus 22 ~l~~~L~~~~~~~v~~--~~~~~~~~~~~~~~~~~~dlvllD~~mp-~~~G~---~~~~~lr~~~~~~~~ii~lt~~ 92 (225)
T 3klo_A 22 LLKEALESKLPLALEI--TPFSELWLEENKPESRSIQMLVIDYSRI-SDDVL---TDYSSFKHISCPDAKEVIINCP 92 (225)
T ss_dssp HHHHHHHHHSSEEEEE--ECGGGHHHHTTCSGGGGCCEEEEEGGGC-CHHHH---HHHHHHHHHHCTTCEEEEEEEC
T ss_pred HHHHHHhhCCCceEEE--EeCCcHHHHHHHhhccCCCEEEEeCCCC-CCCHH---HHHHHHHHhhCCCCcEEEEECC
Confidence 3444444 24555432 2244555566556777899999986522 12211 13334433 345999998543
No 280
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=29.59 E-value=98 Score=18.82 Aligned_cols=69 Identities=7% Similarity=0.056 Sum_probs=35.7
Q ss_pred HHHHHHHhhcCCceEEEEEeccChhHHHHHHHH--hCCCCEEEEecCCCcccccccccchhHHHhhcC-CCCEEEEcCCC
Q 041485 98 LDMLDAASKQKHVSVVAKLYWGDARDKLCEAVE--AMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANA-SCPVTIVKDPS 174 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~--~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~~ 174 (179)
.+.+...+...|..+. ...+..+ ..+... ...+|+|++...-. ....+ .....+-... .+||+++-...
T Consensus 16 ~~~l~~~l~~~g~~v~---~~~~~~~-a~~~~~~~~~~~dlvi~d~~l~-~~~g~---~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 16 LQNIKFLLEIDGNEVL---TASSSTE-GLRIFTENCNSIDVVITDMKMP-KLSGM---DILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp HHHHHHHHHHTTCEEE---EESSHHH-HHHHHHHTTTTCCEEEEESCCS-SSCHH---HHHHHHHHHCTTCEEEEEECTT
T ss_pred HHHHHHHHHhCCceEE---EeCCHHH-HHHHHHhCCCCCCEEEEeCCCC-CCcHH---HHHHHHHHhCCCCeEEEEECCC
Confidence 3444555555665433 1233333 444444 56899999986532 22211 1223333333 48998886543
No 281
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=29.50 E-value=1.5e+02 Score=21.00 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccCh--hHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDA--RDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.+.+.+.+.+.|..+......++. ...+++.....++|-||+....... . ..... +.. .+||+++..
T Consensus 31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~-----~~~~~-l~~-~iPvV~i~~ 102 (303)
T 3kke_A 31 ADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFD-D-----DMLAA-VLE-GVPAVTINS 102 (303)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCC-H-----HHHHH-HHT-TSCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCc-H-----HHHHH-HhC-CCCEEEECC
Confidence 466667777778888877765544444 3456677778899999997543221 0 02233 445 999999865
Q ss_pred CC
Q 041485 173 PS 174 (179)
Q Consensus 173 ~~ 174 (179)
..
T Consensus 103 ~~ 104 (303)
T 3kke_A 103 RV 104 (303)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 282
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=29.20 E-value=95 Score=18.56 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcC-CCCEEEEcCCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANA-SCPVTIVKDPS 174 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~~ 174 (179)
..+.+...+.+.|..+.... .+. .+..+..++..+|+|++...-.. ...+ .....+-... .+|++++-...
T Consensus 13 ~~~~l~~~L~~~g~~v~~~~--~~~-~~a~~~~~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~~ 84 (134)
T 3f6c_A 13 AIAAIRNLLIKNDIEILAEL--TEG-GSAVQRVETLKPDIVIIDVDIPG-VNGI---QVLETLRKRQYSGIIIIVSAKN 84 (134)
T ss_dssp HHHHHHHHHHHTTEEEEEEE--SSS-TTHHHHHHHHCCSEEEEETTCSS-SCHH---HHHHHHHHTTCCSEEEEEECC-
T ss_pred HHHHHHHHHhhCCcEEEEEc--CCH-HHHHHHHHhcCCCEEEEecCCCC-CChH---HHHHHHHhcCCCCeEEEEeCCC
Confidence 33445555566675443222 222 33344555667999999866322 2211 2233444443 38888886543
No 283
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=29.14 E-value=1.5e+02 Score=20.80 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHHHHHH---HHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDKLCEA---VEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~---a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
++.+.+.+.+.+.+...+..+..++..+.+... ....++|.+|-. |+++..|=++.++||+-++.
T Consensus 23 ~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIISR------------Ggta~~Lr~~~~iPVV~I~v 90 (225)
T 2pju_A 23 RLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAA------------GSNGAYLKSRLSVPVILIKP 90 (225)
T ss_dssp HHHHHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEE------------HHHHHHHHTTCSSCEEEECC
T ss_pred HHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEeC------------ChHHHHHHhhCCCCEEEecC
Confidence 444555666666555555666666554444332 223457844432 34555666677899998875
Q ss_pred C
Q 041485 173 P 173 (179)
Q Consensus 173 ~ 173 (179)
.
T Consensus 91 s 91 (225)
T 2pju_A 91 S 91 (225)
T ss_dssp C
T ss_pred C
Confidence 4
No 284
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=29.03 E-value=1.9e+02 Score=22.04 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHHhcCCCC-EEEEEEEeCC
Q 041485 29 KGSKLALKWAIDNLLEKGD-TLYIIHIKLP 57 (179)
Q Consensus 29 ~~s~~al~~a~~la~~~~~-~l~ll~v~~~ 57 (179)
..+.+..++|+++|++.+- +|+++|=...
T Consensus 166 ~~~eRIar~AFe~A~~r~~kkVt~v~KaNv 195 (364)
T 3flk_A 166 RGVDRILKYAFDLAEKRERKHVTSATKSNG 195 (364)
T ss_dssp HHHHHHHHHHHHHHHHSSSCEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECcch
Confidence 4578889999999988765 6998875443
No 285
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=28.94 E-value=91 Score=18.26 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=36.2
Q ss_pred HHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 100 MLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
.+...+...|..+.. .. ...+.....+...+|++++...-. ...++ .....+-...++|++++-..
T Consensus 17 ~l~~~L~~~~~~v~~---~~-~~~~~~~~~~~~~~dlvi~d~~l~-~~~g~---~~~~~l~~~~~~~ii~~s~~ 82 (122)
T 1zgz_A 17 RLQSYFTQEGYTVSV---TA-SGAGLREIMQNQSVDLILLDINLP-DENGL---MLTRALRERSTVGIILVTGR 82 (122)
T ss_dssp HHHHHHHHTTCEEEE---ES-SHHHHHHHHHHSCCSEEEEESCCS-SSCHH---HHHHHHHTTCCCEEEEEESS
T ss_pred HHHHHHHHCCCeEEE---ec-CHHHHHHHHhcCCCCEEEEeCCCC-CCChH---HHHHHHHhcCCCCEEEEECC
Confidence 344444445655431 22 344556677778899999986532 22221 12344444445899888543
No 286
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=28.91 E-value=60 Score=20.25 Aligned_cols=19 Identities=5% Similarity=0.162 Sum_probs=10.8
Q ss_pred HHHHHHHHhCCCCEEEEec
Q 041485 123 DKLCEAVEAMKLDSLVMGS 141 (179)
Q Consensus 123 ~~i~~~a~~~~~dlvVlg~ 141 (179)
+.+.++++++++|.++++.
T Consensus 55 ~~l~~~~~~~~id~viia~ 73 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAV 73 (141)
T ss_dssp GGHHHHHHHHTCCEEEECC
T ss_pred HHHHHHHHHCCCCEEEEeC
Confidence 4455555555666666553
No 287
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=28.83 E-value=92 Score=18.27 Aligned_cols=67 Identities=6% Similarity=0.096 Sum_probs=36.8
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
+.+...+...|..+. .........+......+|++++...-. ...++ .....+-....+|++++-..
T Consensus 17 ~~l~~~l~~~~~~v~----~~~~~~~a~~~~~~~~~dlvi~D~~l~-~~~g~---~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 17 NTLKSIFEAEGYDVF----EATDGAEMHQILSEYDINLVIMDINLP-GKNGL---LLARELREQANVALMFLTGR 83 (123)
T ss_dssp HHHHHHHHTTTCEEE----EESSHHHHHHHHHHSCCSEEEECSSCS-SSCHH---HHHHHHHHHCCCEEEEEESC
T ss_pred HHHHHHHhhCCcEEE----EeCCHHHHHHHHhcCCCCEEEEcCCCC-CCCHH---HHHHHHHhCCCCcEEEEECC
Confidence 344455555566533 222334555666778899999986532 22211 12334433456899888544
No 288
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=28.83 E-value=97 Score=18.53 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=25.1
Q ss_pred CeEEEeecCC----ccHHHHHHHHHHHhcCCCC-EEEEEEEeCC
Q 041485 19 RSIGVALDFS----KGSKLALKWAIDNLLEKGD-TLYIIHIKLP 57 (179)
Q Consensus 19 ~~ILv~vd~s----~~s~~al~~a~~la~~~~~-~l~ll~v~~~ 57 (179)
+++++.+..+ +....+++.|..++...+. ++.++...+.
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~dg 45 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDA 45 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEchH
Confidence 5677777654 4456677777776655366 8877666554
No 289
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=28.81 E-value=1e+02 Score=20.92 Aligned_cols=61 Identities=11% Similarity=-0.038 Sum_probs=35.3
Q ss_pred CCceEEEEEeccC-hhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEE
Q 041485 108 KHVSVVAKLYWGD-ARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVT 168 (179)
Q Consensus 108 ~~~~~~~~~~~g~-~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVl 168 (179)
.|++++....... -...|.+.+++.++|+||=-..+.+.....--|....++...-.+|++
T Consensus 72 ~Gl~v~~v~k~~eGG~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~ 133 (178)
T 1vmd_A 72 LGLKVHRLKSGPLGGDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVA 133 (178)
T ss_dssp HCCCCEECSCGGGTHHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEE
T ss_pred hCceeEEEeecCCCCCchHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEE
Confidence 5777765432111 345799999999999999876521111111123344555555566664
No 290
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=28.76 E-value=99 Score=18.63 Aligned_cols=71 Identities=11% Similarity=-0.010 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcCC-ceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcC-CCCEEEEcCC
Q 041485 96 DVLDMLDAASKQKH-VSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANA-SCPVTIVKDP 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 173 (179)
...+.+...++..| ..+.. . .+. .+..+..+...+|+|++...-.. ...+ .....+-... .+||+++-..
T Consensus 25 ~~~~~l~~~L~~~g~~~v~~-~--~~~-~~a~~~l~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 96 (135)
T 3snk_A 25 NFKRDVATRLDALAIYDVRV-S--ETD-DFLKGPPADTRPGIVILDLGGGD-LLGK---PGIVEARALWATVPLIAVSDE 96 (135)
T ss_dssp HHHHHHHHHHHHTSSEEEEE-E--CGG-GGGGCCCTTCCCSEEEEEEETTG-GGGS---TTHHHHHGGGTTCCEEEEESC
T ss_pred HHHHHHHHHHhhcCCeEEEE-e--ccH-HHHHHHHhccCCCEEEEeCCCCC-chHH---HHHHHHHhhCCCCcEEEEeCC
Confidence 33344555556666 65542 2 222 22333446778999999865322 2211 2333444333 4899988654
Q ss_pred C
Q 041485 174 S 174 (179)
Q Consensus 174 ~ 174 (179)
.
T Consensus 97 ~ 97 (135)
T 3snk_A 97 L 97 (135)
T ss_dssp C
T ss_pred C
Confidence 3
No 291
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=28.73 E-value=1.6e+02 Score=21.32 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=21.8
Q ss_pred cChhHHHHHHHHhCCCCEEEEecCC
Q 041485 119 GDARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 119 g~~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
.-+.+.|++.++++++|+|.++...
T Consensus 166 ~vp~e~iv~aa~e~~~d~VglS~l~ 190 (262)
T 1xrs_B 166 QVANEDFIKKAVELEADVLLVSQTV 190 (262)
T ss_dssp SBCHHHHHHHHHHTTCSEEEEECCC
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeec
Confidence 4688999999999999999998654
No 292
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=28.69 E-value=1.5e+02 Score=20.55 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
++.+.+.+.+++.|..+......+++. ...++.....++|-+|+...... . ... ..+....+||+++..
T Consensus 20 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--~-----~~~-~~l~~~~iPvV~~~~ 90 (275)
T 3d8u_A 20 HFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS--Q-----RTH-QLLEASNTPVLEIAE 90 (275)
T ss_dssp HHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC--H-----HHH-HHHHHHTCCEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC--H-----HHH-HHHHhCCCCEEEEee
Confidence 555666667777787665544334443 34556666778998777543221 1 111 234456789988854
No 293
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=28.54 E-value=1.2e+02 Score=19.64 Aligned_cols=69 Identities=9% Similarity=0.047 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhh-cCCCCEEEEcCCC
Q 041485 98 LDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLA-NASCPVTIVKDPS 174 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~-~~~~pVlvv~~~~ 174 (179)
.+.+...+...|..+. ...+ ..+.++.++...+|+|++...-. ...++ .....+-. ...+||+++....
T Consensus 20 ~~~l~~~L~~~g~~v~---~~~~-~~~al~~~~~~~~dlvl~D~~lp-~~~g~---~~~~~l~~~~~~~~ii~lt~~~ 89 (184)
T 3rqi_A 20 AGTLARGLERRGYAVR---QAHN-KDEALKLAGAEKFEFITVXLHLG-NDSGL---SLIAPLCDLQPDARILVLTGYA 89 (184)
T ss_dssp HHHHHHHHHHTTCEEE---EECS-HHHHHHHHTTSCCSEEEECSEET-TEESH---HHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHHHHHHCCCEEE---EeCC-HHHHHHHHhhCCCCEEEEeccCC-CccHH---HHHHHHHhcCCCCCEEEEeCCC
Confidence 3444555555666542 1233 34455667788899999986421 11211 12233333 3358999886543
No 294
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=28.50 E-value=1.3e+02 Score=19.89 Aligned_cols=72 Identities=10% Similarity=0.167 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHh--CCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEE
Q 041485 92 DLDQDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA--MKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTI 169 (179)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~--~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlv 169 (179)
...+++.+.+.+.+.+.|+++++. ..+-.-+|++...+ .+.|-||+..-..++-+- -....+...++|++=
T Consensus 32 ~Tl~di~~~l~~~a~~~g~~~~~~--QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv-----AlrDAl~~~~~P~VE 104 (153)
T 3lwz_A 32 TTLAEIVSQLEIQAQGMDVALSHL--QSNAEHALIDSIHQARGNTDFILINPAAFTHTSV-----ALRDALLGVQIPFIE 104 (153)
T ss_dssp CCHHHHHHHHHHHHHHTTEEEEEE--ECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH-----HHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEE--ecCCHHHHHHHHHHhhhcCceEEEccccceechH-----HHHHHHHhcCCCEEE
Confidence 345677778888888888776654 44555555554332 468999998654433221 112345556788876
Q ss_pred E
Q 041485 170 V 170 (179)
Q Consensus 170 v 170 (179)
|
T Consensus 105 V 105 (153)
T 3lwz_A 105 I 105 (153)
T ss_dssp E
T ss_pred E
Confidence 5
No 295
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=28.48 E-value=1e+02 Score=18.70 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=36.9
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhh---cCCCCEEEEcCCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLA---NASCPVTIVKDPS 174 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~---~~~~pVlvv~~~~ 174 (179)
+.+...++..|..+.. ..+ ..+.++.+.+..+|+|++...-. ...++ .....+-. ...+||+++-...
T Consensus 18 ~~l~~~L~~~g~~v~~---~~~-~~~al~~~~~~~~dlvl~D~~lp-~~~g~---~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 18 EMLELVLRGAGYEVRR---AAS-GEEALQQIYKNLPDALICDVLLP-GIDGY---TLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HHHHHHHHHTTCEEEE---ESS-HHHHHHHHHHSCCSEEEEESCCS-SSCHH---HHHHHHHHSGGGTTCCEEEEECTT
T ss_pred HHHHHHHHHCCCEEEE---eCC-HHHHHHHHHhCCCCEEEEeCCCC-CCCHH---HHHHHHHcCCCcCCccEEEEecCC
Confidence 3444555556765431 233 34455667778899999986532 22221 12233322 2358999886543
No 296
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=28.46 E-value=1.4e+02 Score=20.31 Aligned_cols=68 Identities=15% Similarity=0.272 Sum_probs=36.4
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
+.+...+...|..+.. ..+. .+..+.++...+|++++...-. ....+ .....+-....+||+++-...
T Consensus 19 ~~l~~~L~~~g~~v~~---~~~~-~~al~~l~~~~~dlvilD~~l~-~~~g~---~~~~~lr~~~~~~ii~lt~~~ 86 (238)
T 2gwr_A 19 EMLTIVLRGEGFDTAV---IGDG-TQALTAVRELRPDLVLLDLMLP-GMNGI---DVCRVLRADSGVPIVMLTAKT 86 (238)
T ss_dssp HHHHHHHHHTTCEEEE---ECCG-GGHHHHHHHHCCSEEEEESSCS-SSCHH---HHHHHHHTTCCCCEEEEEETT
T ss_pred HHHHHHHHHCCCEEEE---ECCH-HHHHHHHHhCCCCEEEEeCCCC-CCCHH---HHHHHHHhCCCCcEEEEeCCC
Confidence 3444444455665432 2333 3344555666799999986532 12211 233444444479999985433
No 297
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=28.39 E-value=1.5e+02 Score=20.58 Aligned_cols=72 Identities=8% Similarity=0.075 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhH--HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARD--KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
++.+.+.+.+.+.|..+......++... ..++.....++|-||+......... .. -+.+....+||+++...
T Consensus 18 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~-~~~~~~~~iPvV~i~~~ 91 (271)
T 2dri_A 18 SLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG-----NA-VKMANQANIPVITLDRQ 91 (271)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH-----HH-HHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH-----HH-HHHHHHCCCcEEEecCC
Confidence 5556666666777876665433344433 3445566678999988643221111 11 12345568999998643
No 298
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=28.39 E-value=95 Score=20.96 Aligned_cols=40 Identities=5% Similarity=0.038 Sum_probs=28.9
Q ss_pred CCeEEEeec-CCccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 18 NRSIGVALD-FSKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 18 ~~~ILv~vd-~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
+.+|||.+. .+..+..+.+...+-+...+..+.++.+.+.
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 46 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRET 46 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 456666654 4556777888888877777889999888664
No 299
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=28.33 E-value=77 Score=20.98 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=25.3
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHh---CCCCEEEEe
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA---MKLDSLVMG 140 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~---~~~dlvVlg 140 (179)
..+...+++.|.++.......|- +.|.+..++ .++|+||..
T Consensus 30 ~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVitt 73 (164)
T 3pzy_A 30 PIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTS 73 (164)
T ss_dssp HHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEEC
Confidence 34556667778776654444544 666554333 469999875
No 300
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=28.32 E-value=1.5e+02 Score=20.68 Aligned_cols=69 Identities=10% Similarity=0.177 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.+.+.+.+++.|..+......+++. ..+++.....++|-||+....... .. ...+ ..+||+++..
T Consensus 23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~--~~-----~~~l---~~iPvV~~~~ 92 (288)
T 2qu7_A 23 TEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSKF--QM-----KREW---LKIPIMTLDR 92 (288)
T ss_dssp HHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSCC--CC-----CGGG---GGSCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCCh--HH-----HHHh---cCCCEEEEec
Confidence 3566667777777888776644334443 345555666789998886543221 11 1222 4689888854
Q ss_pred C
Q 041485 173 P 173 (179)
Q Consensus 173 ~ 173 (179)
.
T Consensus 93 ~ 93 (288)
T 2qu7_A 93 E 93 (288)
T ss_dssp C
T ss_pred c
Confidence 3
No 301
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=28.24 E-value=1e+02 Score=18.54 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=36.0
Q ss_pred HHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc--CCCCEEEEcCCC
Q 041485 98 LDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN--ASCPVTIVKDPS 174 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~--~~~pVlvv~~~~ 174 (179)
.+.+...+.+.|..+.. ..+..+.+....+...+|+|++...-. ....+ ....++-.. ..+||+++....
T Consensus 20 ~~~l~~~L~~~g~~v~~---~~~~~~a~~~~~~~~~~dlvi~D~~l~-~~~g~---~~~~~l~~~~~~~~~ii~~s~~~ 91 (136)
T 3hdv_A 20 REALILYLKSRGIDAVG---ADGAEEARLYLHYQKRIGLMITDLRMQ-PESGL---DLIRTIRASERAALSIIVVSGDT 91 (136)
T ss_dssp HHHHHHHHHHTTCCEEE---ESSHHHHHHHHHHCTTEEEEEECSCCS-SSCHH---HHHHHHHTSTTTTCEEEEEESSC
T ss_pred HHHHHHHHHHcCceEEE---eCCHHHHHHHHHhCCCCcEEEEeccCC-CCCHH---HHHHHHHhcCCCCCCEEEEeCCC
Confidence 33444555555665443 234444444444443499999986532 22211 233444443 348898886543
No 302
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=28.19 E-value=1.5e+02 Score=20.53 Aligned_cols=70 Identities=10% Similarity=0.067 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDPS 174 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~ 174 (179)
..+.+...+...+..+. ......+.++.+....+|+|++...-. ....+ .....+-....+||+++-...
T Consensus 49 ~~~~l~~~L~~~g~~v~----~~~~~~~al~~~~~~~~DlvllD~~lp-~~~G~---~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 49 IANVLRMDLTDAGYVVD----HADSAMNGLIKAREDHPDLILLDLGLP-DFDGG---DVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp HHHHHHHHHHTTTCEEE----EESSHHHHHHHHHHSCCSEEEEECCSC-HHHHH---HHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHHHHHHCCCEEE----EeCCHHHHHHHHhcCCCCEEEEcCCCC-CCCHH---HHHHHHHcCCCCCEEEEECCC
Confidence 33444555555665332 222344455666777899999986532 22211 233444444569999986543
No 303
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=28.19 E-value=95 Score=22.88 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=7.3
Q ss_pred HHHHHHHHHhhcCCce
Q 041485 96 DVLDMLDAASKQKHVS 111 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~ 111 (179)
..++.+.+.+.+.+++
T Consensus 27 ~~~~~~~~~~~~~~~D 42 (333)
T 1ii7_A 27 EAFKNALEIAVQENVD 42 (333)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhcCCC
Confidence 3344444455444544
No 304
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=27.97 E-value=1e+02 Score=18.63 Aligned_cols=69 Identities=10% Similarity=0.077 Sum_probs=37.3
Q ss_pred HHHHHHHhhc-CCceEEEEEeccChhHHHHHHHHh-CCCCEEEEecCCCcccccccccchhHHHhh---cCCCCEEEEcC
Q 041485 98 LDMLDAASKQ-KHVSVVAKLYWGDARDKLCEAVEA-MKLDSLVMGSRGLGTIQRVLLGSVSNHVLA---NASCPVTIVKD 172 (179)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~~~~~g~~~~~i~~~a~~-~~~dlvVlg~~~~~~~~~~~~gs~~~~il~---~~~~pVlvv~~ 172 (179)
.+.+...+.. .+.++.. ..+ ..+..+.+++ ..+|+|++...-.+....+ .....+-. ...+||+++-.
T Consensus 17 ~~~l~~~L~~~~~~~v~~---~~~-~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~~~~ii~ls~ 89 (140)
T 3lua_A 17 REKTKIIFDNIGEYDFIE---VEN-LKKFYSIFKDLDSITLIIMDIAFPVEKEGL---EVLSAIRNNSRTANTPVIIATK 89 (140)
T ss_dssp HHHHHHHHHHHCCCEEEE---ECS-HHHHHTTTTTCCCCSEEEECSCSSSHHHHH---HHHHHHHHSGGGTTCCEEEEES
T ss_pred HHHHHHHHHhccCccEEE---ECC-HHHHHHHHhcCCCCcEEEEeCCCCCCCcHH---HHHHHHHhCcccCCCCEEEEeC
Confidence 3444555555 5665441 223 3445556666 8899999986532022211 12233333 34589998865
Q ss_pred C
Q 041485 173 P 173 (179)
Q Consensus 173 ~ 173 (179)
.
T Consensus 90 ~ 90 (140)
T 3lua_A 90 S 90 (140)
T ss_dssp C
T ss_pred C
Confidence 4
No 305
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=27.92 E-value=79 Score=19.20 Aligned_cols=72 Identities=7% Similarity=0.111 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcc-cccccccchhHHHhhcC-CCCEEEEcCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGT-IQRVLLGSVSNHVLANA-SCPVTIVKDP 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~-~~~~~~gs~~~~il~~~-~~pVlvv~~~ 173 (179)
...+.+...+...|..+.. ..+ ..+..+..++..+|+|++...-... ...+ .....+-... .+||+++-..
T Consensus 17 ~~~~~l~~~L~~~g~~v~~---~~~-~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~---~~~~~l~~~~~~~~ii~~s~~ 89 (136)
T 3kto_A 17 DARAALSKLLSPLDVTIQC---FAS-AESFMRQQISDDAIGMIIEAHLEDKKDSGI---ELLETLVKRGFHLPTIVMASS 89 (136)
T ss_dssp HHHHHHHHHHTTSSSEEEE---ESS-HHHHTTSCCCTTEEEEEEETTGGGBTTHHH---HHHHHHHHTTCCCCEEEEESS
T ss_pred HHHHHHHHHHHHCCcEEEE---eCC-HHHHHHHHhccCCCEEEEeCcCCCCCccHH---HHHHHHHhCCCCCCEEEEEcC
Confidence 3444555666666765442 223 3444455566789999998652210 1211 1233333333 4899988654
Q ss_pred C
Q 041485 174 S 174 (179)
Q Consensus 174 ~ 174 (179)
.
T Consensus 90 ~ 90 (136)
T 3kto_A 90 S 90 (136)
T ss_dssp C
T ss_pred C
Confidence 3
No 306
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=27.88 E-value=1.1e+02 Score=18.65 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=36.5
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
+.+...+...|..+. ...+ ..+.++.+....+|++++...-. ...++ .....+-....+||+++-..
T Consensus 18 ~~l~~~L~~~g~~v~---~~~~-~~~al~~~~~~~~dlvllD~~l~-~~~g~---~l~~~l~~~~~~~ii~ls~~ 84 (136)
T 2qzj_A 18 QKLKGFLEEKGISID---LAYN-CEEAIGKIFSNKYDLIFLEIILS-DGDGW---TLCKKIRNVTTCPIVYMTYI 84 (136)
T ss_dssp HHHHHHHHTTTCEEE---EESS-HHHHHHHHHHCCCSEEEEESEET-TEEHH---HHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHHCCCEEE---EECC-HHHHHHHHHhcCCCEEEEeCCCC-CCCHH---HHHHHHccCCCCCEEEEEcC
Confidence 344455555566543 1233 34455666777899999986522 11211 12344433347899988543
No 307
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=27.81 E-value=58 Score=21.77 Aligned_cols=42 Identities=14% Similarity=0.013 Sum_probs=24.7
Q ss_pred hhcCCCCeEEEeecCC---ccHHHHHHHHHHHhcCCCCEEEEEEEeC
Q 041485 13 KMASNNRSIGVALDFS---KGSKLALKWAIDNLLEKGDTLYIIHIKL 56 (179)
Q Consensus 13 ~m~~~~~~ILv~vd~s---~~s~~al~~a~~la~~~~~~l~ll~v~~ 56 (179)
+|.. +.+||+.+... ..+...++...+.+. .+.++.++.+.+
T Consensus 2 ~m~~-~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~ 46 (193)
T 1rtt_A 2 SLSD-DIKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISG 46 (193)
T ss_dssp ------CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTT
T ss_pred CCCC-CceEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHHH
Confidence 4544 23676665442 356777777777666 577888877755
No 308
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=27.80 E-value=89 Score=22.15 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCceEEEEEeccChhHHHHHHHHh--CCCCEEEEecC
Q 041485 98 LDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEA--MKLDSLVMGSR 142 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~--~~~dlvVlg~~ 142 (179)
++.+++...+.+.++...+ .|.....-...+.+ .++|.+|+|+.
T Consensus 174 i~~lr~~~~~~~~~~~I~v-dGGI~~~~~~~~~~~~aGad~~VvGSa 219 (237)
T 3cu2_A 174 VIQVEKRLGNRRVEKLINI-DGSMTLELAKYFKQGTHQIDWLVSGSA 219 (237)
T ss_dssp HHHHHHHHGGGGGGCEEEE-ESSCCHHHHHHHHHSSSCCCCEEECGG
T ss_pred HHHHHHHHHhcCCCceEEE-ECCcCHHHHHHHHHhCCCCcEEEEeeH
Confidence 3445555555554444444 45555555666667 78999999975
No 309
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=27.75 E-value=1.5e+02 Score=22.12 Aligned_cols=11 Identities=18% Similarity=0.483 Sum_probs=7.5
Q ss_pred CCCCEEEEecC
Q 041485 132 MKLDSLVMGSR 142 (179)
Q Consensus 132 ~~~dlvVlg~~ 142 (179)
-++|+||-|+.
T Consensus 233 ~gID~IlgGHs 243 (339)
T 3jyf_A 233 PGVDAIMFGHA 243 (339)
T ss_dssp TTCCEEEECSS
T ss_pred CCCCEEEeCCC
Confidence 46888877754
No 310
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=27.70 E-value=1.6e+02 Score=20.63 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCCCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEE
Q 041485 5 LNKLIFFFKMASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYI 51 (179)
Q Consensus 5 ~~~~~~~~~m~~~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~l 51 (179)
+..|+..-.-.+ .+.|+++++++-+...-..|-.++.+..+.+++=
T Consensus 138 i~~L~~Ri~~~~-v~EVIlAtnpTvEGeaTa~Yi~~~Lk~~~vkvTR 183 (212)
T 3vdp_A 138 IKELLERVRDGS-VKEVILATNPDIEGEATAMYIAKLLKPFGVKVTR 183 (212)
T ss_dssp HHHHHHHHHHSC-CSEEEECCCSSHHHHHHHHHHHHHHTTTTCEEEE
T ss_pred HHHHHHHHhcCC-CcEEEEECCCCccHHHHHHHHHHHhhhcCCCeee
Confidence 344555554444 8999999999999999999999999887765553
No 311
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=27.45 E-value=1.1e+02 Score=18.48 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcC-CCCEEEEcCCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANA-SCPVTIVKDPS 174 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~~ 174 (179)
+.+...+.+.+..+.. .. ...+..+..+...+|+|++...-.. ...+ ....++-... .+||+++-...
T Consensus 21 ~~l~~~L~~~~~~v~~---~~-~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~~ 89 (137)
T 3hdg_A 21 EWLSTIISNHFPEVWS---AG-DGEEGERLFGLHAPDVIITDIRMPK-LGGL---EMLDRIKAGGAKPYVIVISAFS 89 (137)
T ss_dssp HHHHHHHHTTCSCEEE---ES-SHHHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHTTCCCEEEECCCCC
T ss_pred HHHHHHHHhcCcEEEE---EC-CHHHHHHHHhccCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCcEEEEecCc
Confidence 3444555555554332 12 3344555666678999999865322 2211 2233444443 38888876543
No 312
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=27.40 E-value=36 Score=26.64 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=19.1
Q ss_pred cChhHHHHHHHH-hCCCCEEEEecCCCc
Q 041485 119 GDARDKLCEAVE-AMKLDSLVMGSRGLG 145 (179)
Q Consensus 119 g~~~~~i~~~a~-~~~~dlvVlg~~~~~ 145 (179)
|+-.+.+.+.++ +.++..|.+...+..
T Consensus 113 GdDi~~v~~~~~~~~~ipVi~v~~~Gf~ 140 (460)
T 2xdq_A 113 KMDLEGLAPKLEAEIGIPIVVARANGLD 140 (460)
T ss_dssp TCCHHHHHHHHHHHHSSCEEEEECCTTT
T ss_pred hhCHHHHHHHHhhccCCcEEEEecCCcc
Confidence 666777777765 567888888777543
No 313
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=27.25 E-value=1.6e+02 Score=20.67 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhH--HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARD--KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.+.+.+.+.+.+.|.++.+... +++.. ..++.....++|-||+......... ..-+.+....+||+++-.
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~------~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 19 TEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGS------AIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHH------HHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhH------HHHHHHHHCCCcEEEeCC
Confidence 5555666666666877654332 34433 3445555667999999754322111 112345667899999963
No 314
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=27.03 E-value=1.5e+02 Score=20.09 Aligned_cols=71 Identities=8% Similarity=0.150 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHhh--cCCceEEEEEeccChhHHHHHH---HHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCE
Q 041485 93 LDQDVLDMLDAASK--QKHVSVVAKLYWGDARDKLCEA---VEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPV 167 (179)
Q Consensus 93 ~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~i~~~---a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pV 167 (179)
..+.+.+.+.+.+. +.|+++++ ...+..-+|++. +...++|-||+..-..++.+- -....+...++|+
T Consensus 35 Tl~di~~~l~~~a~~~~~g~~l~~--~QSN~EGeLId~Ih~a~~~~~dgIIINpgAyTHtSv-----AlrDAl~~v~~P~ 107 (176)
T 2c4w_A 35 TLDQIHEIMQTFVKQGNLDVELEF--FQTNFEGEIIDKIQESVGSEYEGIIINPGAFSHTSI-----AIADAIMLAGKPV 107 (176)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEE--EECSCHHHHHHHHHHHHSSSCCEEEEECGGGGGTCH-----HHHHHHHTSSSCE
T ss_pred CHHHHHHHHHHHhccccCCCEEEE--EeeCcHHHHHHHHHHhccCCeeEEEECcchhccchH-----HHHHHHHhCCCCE
Confidence 34677777888888 77776664 445555555554 444448999998654433221 2245677788998
Q ss_pred EEE
Q 041485 168 TIV 170 (179)
Q Consensus 168 lvv 170 (179)
+=|
T Consensus 108 VEV 110 (176)
T 2c4w_A 108 IEV 110 (176)
T ss_dssp EEE
T ss_pred EEE
Confidence 866
No 315
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=26.94 E-value=1.7e+02 Score=20.72 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=40.6
Q ss_pred HHHHHHHHhhcCCceEEEEEec-c-------Ch--hHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYW-G-------DA--RDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCP 166 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-g-------~~--~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~p 166 (179)
....+.+.+++.++.+...+.. | ++ ...+.+.+.+.++|.|.++.. ..+ ....++...+++|
T Consensus 133 ~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~--~~~------~~l~~i~~~~~ip 204 (273)
T 2qjg_A 133 DLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT--GDI------DSFRDVVKGCPAP 204 (273)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC--SSH------HHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC--CCH------HHHHHHHHhCCCC
Confidence 3445566666667766554311 1 11 233346788899999988731 111 2335677777899
Q ss_pred EEEEcCC
Q 041485 167 VTIVKDP 173 (179)
Q Consensus 167 Vlvv~~~ 173 (179)
|+....-
T Consensus 205 vva~GGi 211 (273)
T 2qjg_A 205 VVVAGGP 211 (273)
T ss_dssp EEEECCS
T ss_pred EEEEeCC
Confidence 9887643
No 316
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=26.94 E-value=94 Score=20.46 Aligned_cols=37 Identities=8% Similarity=-0.020 Sum_probs=29.1
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEe
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIK 55 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~ 55 (179)
.+.++|.++.|..+...++ +++.|+..|+++.++.-.
T Consensus 79 ~~d~vI~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~ 115 (186)
T 1m3s_A 79 EGDLVIIGSGSGETKSLIH-TAAKAKSLHGIVAALTIN 115 (186)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEEcCCCCcHHHHH-HHHHHHHCCCEEEEEECC
Confidence 5789999999998877665 567788899988777554
No 317
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=26.94 E-value=1.7e+02 Score=20.74 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhH--HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARD--KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
...+.+.+.+.+.|..+......+++.. ..++.....++|-||+.......... . -..+....+||+++...
T Consensus 19 ~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~-~~~~~~~~iPvV~~~~~ 92 (306)
T 2vk2_A 19 AETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEP-----V-LKEAKDAEIPVFLLDRS 92 (306)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHH-----H-HHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHH-----H-HHHHHHCCCCEEEecCC
Confidence 4445555666667877665443344433 34555556679999986543221111 1 12345568999988643
No 318
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=26.94 E-value=1.6e+02 Score=21.32 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=32.0
Q ss_pred hhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 121 ARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 121 ~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
-..++...++..++.|+|++..- ++..-. .....+.+...+|..+|+.
T Consensus 128 GvneVtKaIekgKAqLVVIA~Dv-dPielv---~~LPaLCee~~VPY~~V~s 175 (255)
T 4a17_F 128 GLNHITTLIENKQAKLVVIAHDV-DPIELV---IFLPQLCRKNDVPFAFVKG 175 (255)
T ss_dssp CHHHHHHHHHTSCCSEEEEESCC-SSTHHH---HHHHHHHHHTTCCEEEESC
T ss_pred chHHHHHHHHcCCceEEEEeCCC-ChHHHH---HHHHHHHHHcCCCEEEECC
Confidence 36788888999999999998653 333211 1223456677788888764
No 319
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=26.93 E-value=1.5e+02 Score=19.95 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHh--hcCCceEEEEEeccChhHHHHHHHHh---CCCCEEEEecCCCcccccccccchhHHHhhcCCCCE
Q 041485 93 LDQDVLDMLDAAS--KQKHVSVVAKLYWGDARDKLCEAVEA---MKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPV 167 (179)
Q Consensus 93 ~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~i~~~a~~---~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pV 167 (179)
..+.+.+.+.+.+ .+.|+++++. ..+-.-+|++...+ .+.|-||+..-..+..+- -....+...++|+
T Consensus 40 TL~di~~~l~~~a~~~~~g~~v~~~--QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHtSv-----AlrDAL~~v~~P~ 112 (167)
T 3kip_A 40 SLSDIEQAAIEQAKLKNNDSEVLVF--QSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHTSV-----GIRDALLGTAIPF 112 (167)
T ss_dssp CHHHHHHHHHHHHHHTCSSCEEEEE--ECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGTCH-----HHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHhccccCCcEEEEE--ecCCHHHHHHHHHHhhhcCccEEEEccccceeccH-----HHHHHHHhcCCCE
Confidence 3456777778888 6777776654 44555555554332 469999998654433221 1233566678898
Q ss_pred EEE
Q 041485 168 TIV 170 (179)
Q Consensus 168 lvv 170 (179)
+=|
T Consensus 113 VEV 115 (167)
T 3kip_A 113 IEV 115 (167)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 320
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=26.86 E-value=99 Score=18.01 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=35.4
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc-CCCCEEEEcCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN-ASCPVTIVKDP 173 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~~~ 173 (179)
+.+...+...|..+... ..+. .+..+......+|++++...-. ...+. ....++-.. ..+|++++...
T Consensus 16 ~~l~~~l~~~g~~vv~~--~~~~-~~a~~~~~~~~~dlil~D~~l~-~~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (120)
T 1tmy_A 16 MMLKDIITKAGYEVAGE--ATNG-REAVEKYKELKPDIVTMDITMP-EMNGI---DAIKEIMKIDPNAKIIVCSAM 84 (120)
T ss_dssp HHHHHHHHHTTCEEEEE--ESSH-HHHHHHHHHHCCSEEEEECSCG-GGCHH---HHHHHHHHHCTTCCEEEEECT
T ss_pred HHHHHHHhhcCcEEEEE--ECCH-HHHHHHHHhcCCCEEEEeCCCC-CCcHH---HHHHHHHhhCCCCeEEEEeCC
Confidence 34444455556653212 2333 4444555666799999986532 22211 123344333 34899888654
No 321
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=26.85 E-value=1.2e+02 Score=18.79 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
+.+.+.+.+.+.+.|++++..-....... .-.++|.||+|+..
T Consensus 13 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~~------~l~~~d~iiig~pt 55 (138)
T 5nul_A 13 EKMAELIAKGIIESGKDVNTINVSDVNID------ELLNEDILILGCSA 55 (138)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEGGGCCHH------HHTTCSEEEEEECC
T ss_pred HHHHHHHHHHHHHCCCeEEEEEhhhCCHH------HHhhCCEEEEEcCc
Confidence 45556666666666776665433322111 22458999999764
No 322
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=26.73 E-value=1.6e+02 Score=20.35 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccCh--hHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDA--RDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.+.+.+.+++.|.++......+++ ....++.....++|-||+....... . . -+.+....+||+++..
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~--~-----~-~~~~~~~~iPvV~~~~ 86 (276)
T 2h0a_A 15 RRLVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLTE--R-----F-EEGRLPTERPVVLVDA 86 (276)
T ss_dssp HHHHHHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC--------------CCSCSSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH--H-----H-HHHHhhcCCCEEEEec
Confidence 356667777788888776653323333 3345666667789998886543221 1 1 1234556799988854
Q ss_pred C
Q 041485 173 P 173 (179)
Q Consensus 173 ~ 173 (179)
.
T Consensus 87 ~ 87 (276)
T 2h0a_A 87 Q 87 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 323
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=26.63 E-value=1.2e+02 Score=21.50 Aligned_cols=40 Identities=18% Similarity=0.032 Sum_probs=28.2
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
.+.|++..|+.+.+...+..+++.++..+..+..+-+-..
T Consensus 126 ~~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG~~ 165 (266)
T 4hqo_A 126 IQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQG 165 (266)
T ss_dssp EEEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECSSS
T ss_pred CeEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecCcc
Confidence 3567777788776655566666777778888888887553
No 324
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=26.53 E-value=54 Score=24.89 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=8.6
Q ss_pred CEEEEEEEeCCC
Q 041485 47 DTLYIIHIKLPQ 58 (179)
Q Consensus 47 ~~l~ll~v~~~~ 58 (179)
..+.++|+.+..
T Consensus 19 ~~mrilhiSD~H 30 (386)
T 3av0_A 19 SHMMFVHIADNH 30 (386)
T ss_dssp CCCEEEEECCCC
T ss_pred CCeEEEEEccCC
Confidence 357788887765
No 325
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=26.27 E-value=1e+02 Score=17.89 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=35.1
Q ss_pred HHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 100 MLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
.+...+...|..+.. ..+. ....+......+|++++...-. ...++ .....+-...++|++++-..
T Consensus 16 ~l~~~l~~~~~~v~~---~~~~-~~a~~~~~~~~~dlvl~D~~l~-~~~g~---~~~~~l~~~~~~~ii~~s~~ 81 (120)
T 2a9o_A 16 IIKFNMTKEGYEVVT---AFNG-REALEQFEAEQPDIIILDLMLP-EIDGL---EVAKTIRKTSSVPILMLSAK 81 (120)
T ss_dssp HHHHHHHHTTCEEEE---ESSH-HHHHHHHHHHCCSEEEECSSCS-SSCHH---HHHHHHHHHCCCCEEEEESC
T ss_pred HHHHHHHhcCcEEEE---ecCH-HHHHHHHHhCCCCEEEEeccCC-CCCHH---HHHHHHHhCCCCCEEEEecC
Confidence 334444455665431 2333 3444555666799999986532 22221 12334434456999988654
No 326
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=26.19 E-value=1.2e+02 Score=18.65 Aligned_cols=70 Identities=9% Similarity=0.125 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHh-----hcCCCCEEEEc
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVL-----ANASCPVTIVK 171 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il-----~~~~~pVlvv~ 171 (179)
..+.+...++..|..+.. ..+ .++.++..+...+|+|++...-. ...++ .....+- ....+|++++.
T Consensus 26 ~~~~l~~~L~~~g~~v~~---~~~-~~~al~~~~~~~~dlvl~D~~mp-~~~g~---~~~~~lr~~~~~~~~~~pii~~s 97 (143)
T 3m6m_D 26 NRMVLQRLLEKAGHKVLC---VNG-AEQVLDAMAEEDYDAVIVDLHMP-GMNGL---DMLKQLRVMQASGMRYTPVVVLS 97 (143)
T ss_dssp HHHHHHHHHHC--CEEEE---ESS-HHHHHHHHHHSCCSEEEEESCCS-SSCHH---HHHHHHHHHHHTTCCCCCEEEEE
T ss_pred HHHHHHHHHHHcCCeEEE---eCC-HHHHHHHHhcCCCCEEEEeCCCC-CCCHH---HHHHHHHhchhccCCCCeEEEEe
Confidence 334455556666665432 233 45566667788899999986532 22221 1222221 11348999886
Q ss_pred CCC
Q 041485 172 DPS 174 (179)
Q Consensus 172 ~~~ 174 (179)
...
T Consensus 98 ~~~ 100 (143)
T 3m6m_D 98 ADV 100 (143)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 327
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=26.18 E-value=1.3e+02 Score=19.06 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 97 VLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
..+.+...+...+....+ ....+ ..+.++.+++..+|+|++...-. ....+ .....+-...++|++++-..
T Consensus 37 ~~~~l~~~L~~~~~~~~v-~~~~~-~~~al~~l~~~~~dlvilD~~l~-~~~g~---~l~~~lr~~~~~~ii~~s~~ 107 (164)
T 3t8y_A 37 MRMVLKDIIDSQPDMKVV-GFAKD-GLEAVEKAIELKPDVITMDIEMP-NLNGI---EALKLIMKKAPTRVIMVSSL 107 (164)
T ss_dssp HHHHHHHHHHTSTTEEEE-EEESS-HHHHHHHHHHHCCSEEEECSSCS-SSCHH---HHHHHHHHHSCCEEEEEESS
T ss_pred HHHHHHHHHhcCCCeEEE-EecCC-HHHHHHHhccCCCCEEEEeCCCC-CCCHH---HHHHHHHhcCCceEEEEecC
Confidence 334455555554322111 11233 34445556666799999986532 22211 23345555566898888543
No 328
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=26.08 E-value=2e+02 Score=21.17 Aligned_cols=77 Identities=6% Similarity=-0.032 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCC---cccccccccchhHHHhhcCCCCEEEE
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGL---GTIQRVLLGSVSNHVLANASCPVTIV 170 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~---~~~~~~~~gs~~~~il~~~~~pVlvv 170 (179)
+..+.+.+.... .+.+-.-+...+..+. +.+.|++.++|.+.+-..-. ....+--+=..-..|...++.||++.
T Consensus 65 ~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilY 143 (309)
T 3fkr_A 65 VLTRTILEHVAG-RVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQ 143 (309)
T ss_dssp HHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHhCC-CCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 444455554432 3555444433344444 44679999999998875422 11111111124467888899999998
Q ss_pred cCC
Q 041485 171 KDP 173 (179)
Q Consensus 171 ~~~ 173 (179)
..+
T Consensus 144 n~P 146 (309)
T 3fkr_A 144 DAP 146 (309)
T ss_dssp ECG
T ss_pred eCC
Confidence 644
No 329
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=26.07 E-value=1.1e+02 Score=18.35 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=27.7
Q ss_pred hHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcC-CCCEEEEcCC
Q 041485 122 RDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANA-SCPVTIVKDP 173 (179)
Q Consensus 122 ~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 173 (179)
..+.++..+...+|++++...-. ...+. .....+-... .+||+++-..
T Consensus 38 ~~~al~~~~~~~~dlvilD~~lp-~~~g~---~~~~~l~~~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 38 GLDAMKLIEEYNPNVVILDIEMP-GMTGL---EVLAEIRKKHLNIKVIIVTTF 86 (133)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCS-SSCHH---HHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHHhhcCCCEEEEecCCC-CCCHH---HHHHHHHHHCCCCcEEEEecC
Confidence 34455666667899999986532 22211 2234444333 4899988644
No 330
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=26.04 E-value=1e+02 Score=21.81 Aligned_cols=79 Identities=9% Similarity=-0.154 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHHHHHHHHhhcCCc
Q 041485 31 SKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVLDMLDAASKQKHV 110 (179)
Q Consensus 31 s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (179)
....++.++++|...|++...++...... ....++ ..+...+.+..+.+.+++.|+
T Consensus 82 ~~~~~~~~i~~A~~lG~~~v~~~~g~~~~-------------------~~~~~~-----~~~~~~~~l~~l~~~a~~~Gv 137 (286)
T 3dx5_A 82 TIEKCEQLAILANWFKTNKIRTFAGQKGS-------------------ADFSQQ-----ERQEYVNRIRMICELFAQHNM 137 (286)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECSCSSCG-------------------GGSCHH-----HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCc-------------------ccCcHH-----HHHHHHHHHHHHHHHHHHhCC
Confidence 34567788888888888877665432210 000001 112334556667777778888
Q ss_pred eEEEEEecc---ChhHHHHHHHHhCC
Q 041485 111 SVVAKLYWG---DARDKLCEAVEAMK 133 (179)
Q Consensus 111 ~~~~~~~~g---~~~~~i~~~a~~~~ 133 (179)
.+-.+...+ .....+.+.++..+
T Consensus 138 ~l~lE~~~~~~~~~~~~~~~l~~~~~ 163 (286)
T 3dx5_A 138 YVLLETHPNTLTDTLPSTLELLGEVD 163 (286)
T ss_dssp EEEEECCTTSTTSSHHHHHHHHHHHC
T ss_pred EEEEecCCCcCcCCHHHHHHHHHhcC
Confidence 777765443 23455666666644
No 331
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=26.03 E-value=1.2e+02 Score=18.55 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=28.1
Q ss_pred hHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhh---cCCCCEEEEcCC
Q 041485 122 RDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLA---NASCPVTIVKDP 173 (179)
Q Consensus 122 ~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~---~~~~pVlvv~~~ 173 (179)
..+..+.++...+|+||+...-. ....+ .....+-. ...+||+++-..
T Consensus 41 ~~~a~~~l~~~~~dlii~d~~l~-~~~g~---~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 41 AIEAVPVAVKTHPHLIITEANMP-KISGM---DLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCS-SSCHH---HHHHHHHTSTTTTTSCEEEEESS
T ss_pred HHHHHHHHHcCCCCEEEEcCCCC-CCCHH---HHHHHHHcCcccCCCCEEEEeCC
Confidence 44455666667899999986532 22211 23344443 345999988654
No 332
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=25.69 E-value=1.1e+02 Score=18.14 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=36.4
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhC-CCCEEEEecCCCcccccccccchhHHHhhc-CCCCEEEEcCCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAM-KLDSLVMGSRGLGTIQRVLLGSVSNHVLAN-ASCPVTIVKDPS 174 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~-~~dlvVlg~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~~~~ 174 (179)
+.+...+...|..+.. ..+ ..+..+..+.. .+|++++...-......+ .....+-.. ..+||+++-...
T Consensus 19 ~~l~~~L~~~g~~v~~---~~~-~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 19 LDFESTLTDAGFLVTA---VSS-GAKAIEMLKSGAAIDGVVTDIRFCQPPDGW---QVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp HHHHHHHHHTTCEEEE---ESS-HHHHHHHHHTTCCCCEEEEESCCSSSSCHH---HHHHHHHHHCTTCCEEEEESSC
T ss_pred HHHHHHHHHcCCEEEE---ECC-HHHHHHHHHcCCCCCEEEEeeeCCCCCCHH---HHHHHHHhcCCCCCEEEEeCCc
Confidence 3344444555665442 233 34455566665 899999986532112211 122333333 358999885543
No 333
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=25.61 E-value=1.7e+02 Score=20.30 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHHHHHHHHhhcCCce
Q 041485 32 KLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVLDMLDAASKQKHVS 111 (179)
Q Consensus 32 ~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (179)
...++.++++|...|++..+++...... ....+ ...+...+.+..+.+.+++.|+.
T Consensus 83 ~~~~~~~i~~a~~lG~~~v~~~~g~~~~-------------------~~~~~-----~~~~~~~~~l~~l~~~a~~~gv~ 138 (278)
T 1i60_A 83 ITEFKGMMETCKTLGVKYVVAVPLVTEQ-------------------KIVKE-----EIKKSSVDVLTELSDIAEPYGVK 138 (278)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCBCSS-------------------CCCHH-----HHHHHHHHHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------CCCHH-----HHHHHHHHHHHHHHHHHHhcCCE
Confidence 4567888888988898877775321110 00000 11123345566677777778887
Q ss_pred EEEEEeccC-----hhHHHHHHHHhCCC
Q 041485 112 VVAKLYWGD-----ARDKLCEAVEAMKL 134 (179)
Q Consensus 112 ~~~~~~~g~-----~~~~i~~~a~~~~~ 134 (179)
+..+...+. ....+...++..+.
T Consensus 139 l~lEn~~~~~~~~~~~~~~~~l~~~~~~ 166 (278)
T 1i60_A 139 IALEFVGHPQCTVNTFEQAYEIVNTVNR 166 (278)
T ss_dssp EEEECCCCTTBSSCSHHHHHHHHHHHCC
T ss_pred EEEEecCCccchhcCHHHHHHHHHHhCC
Confidence 777654332 34566666666443
No 334
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=25.37 E-value=58 Score=20.04 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=24.7
Q ss_pred HHHHHhhcCCceEEEEEecc-ChhHHH-HHHHHhCCCCEEEEecCCC
Q 041485 100 MLDAASKQKHVSVVAKLYWG-DARDKL-CEAVEAMKLDSLVMGSRGL 144 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~g-~~~~~i-~~~a~~~~~dlvVlg~~~~ 144 (179)
.+.+.+++.|++++++.... .+...+ .+.+.. +|+||+.....
T Consensus 24 aLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~--AD~VIia~d~~ 68 (106)
T 2m1z_A 24 ALKKGAKKMGNLIKVETQGATGIENELTEKDVNI--GEVVIFAVDTK 68 (106)
T ss_dssp HHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHH--CSEEEEEESSC
T ss_pred HHHHHHHHCCCEEEEEEecCccccCCCCHHHHhh--CCEEEEecccc
Confidence 44555566677666655332 222333 244555 99999997643
No 335
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=25.34 E-value=1e+02 Score=19.81 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=24.3
Q ss_pred hHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEE
Q 041485 122 RDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIV 170 (179)
Q Consensus 122 ~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 170 (179)
.....+.-++-+.+.-++|++.-++......-.+-+...+..+.||+++
T Consensus 72 ~~~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~ 120 (141)
T 4e0q_A 72 YNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQ 120 (141)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEE
Confidence 3445555555666777777764332111000113345556667777776
No 336
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=25.30 E-value=2.4e+02 Score=21.91 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=15.0
Q ss_pred HHHHHHhCCCCEEEEecCCCcc
Q 041485 125 LCEAVEAMKLDSLVMGSRGLGT 146 (179)
Q Consensus 125 i~~~a~~~~~dlvVlg~~~~~~ 146 (179)
.++.++..++|+|++-+.++..
T Consensus 172 ~l~~~~~~~~DvVIIDTaG~l~ 193 (425)
T 2ffh_A 172 VEEKARLEARDLILVDTAGRLQ 193 (425)
T ss_dssp HHHHHHHTTCSEEEEECCCCSS
T ss_pred HHHHHHHCCCCEEEEcCCCccc
Confidence 4455555679999998776543
No 337
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=25.27 E-value=1.8e+02 Score=20.37 Aligned_cols=69 Identities=6% Similarity=0.011 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
.+.+.+.+.+++.|..+.+....+++. ..+++.....++|-||+...... . ..... +. ..+||+++...
T Consensus 25 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~-----~~~~~-l~-~~iPvV~~~~~ 95 (285)
T 3c3k_A 25 AVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSE--L-----PELQN-II-GAFPWVQCAEY 95 (285)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG--H-----HHHHH-HH-TTSSEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC--h-----HHHHH-Hh-cCCCEEEEccc
Confidence 555666667777788776544334443 34556666778999988643211 1 11233 34 78999998543
No 338
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=25.16 E-value=2e+02 Score=20.88 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEE
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIV 170 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 170 (179)
.++.+.+.+.+.+.|..+.......++. ..+++.....++|-||+....... .....+....+||+++
T Consensus 84 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 84 PEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE--------AARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH--------HHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH--------HHHHHHHhCCCCEEEE
Confidence 3666777788888898876554444443 345566667889999986443211 1234466778999998
No 339
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=25.12 E-value=2.1e+02 Score=21.14 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=26.7
Q ss_pred ccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEE
Q 041485 118 WGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVT 168 (179)
Q Consensus 118 ~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVl 168 (179)
.|.......+..... +|.||+-....+ ....+.+++.+||+
T Consensus 80 kgEsl~DTarvls~~-~D~iviR~~~~~---------~~~~la~~~~vPVI 120 (299)
T 1pg5_A 80 KGENLADTIRMLNNY-SDGIVMRHKYDG---------ASRFASEISDIPVI 120 (299)
T ss_dssp -CCCHHHHHHHHHHH-CSEEEEEESSBT---------HHHHHHHHCSSCEE
T ss_pred CCCCHHHHHHHHHHh-CCEEEEeCCChh---------HHHHHHHhCCCCEE
Confidence 355556666666666 799999654322 33567788899986
No 340
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=25.02 E-value=1.8e+02 Score=20.28 Aligned_cols=71 Identities=8% Similarity=0.191 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhH--HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARD--KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
++.+.+.+.+++.|.++......+++.. ..++.....++|-||+....... .....+.+...+||+++...
T Consensus 24 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-------~~~~~l~~~~~iPvV~~~~~ 96 (289)
T 1dbq_A 24 EIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-------PLLAMLEEYRHIPMVVMDWG 96 (289)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCH-------HHHHHHHHTTTSCEEEEECS
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCCH-------HHHHHHHhccCCCEEEEccC
Confidence 4555666666667777665433344433 34555566789998886443211 11222222367999888543
No 341
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=24.96 E-value=1.6e+02 Score=19.75 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=36.3
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
+.+...+...+..+.. ..+. .+..+..+...+|++++...-. ....+ .....+-....+||+++-..
T Consensus 18 ~~l~~~L~~~g~~v~~---~~~~-~~al~~~~~~~~dlvllD~~l~-~~~g~---~~~~~l~~~~~~~ii~lt~~ 84 (230)
T 2oqr_A 18 DPLAFLLRKEGFEATV---VTDG-PAALAEFDRAGADIVLLDLMLP-GMSGT---DVCKQLRARSSVPVIMVTAR 84 (230)
T ss_dssp HHHHHHHHHTTCEEEE---ECSH-HHHHHHHHHHCCSEEEEESSCS-SSCHH---HHHHHHHHHCSCSEEEEECC
T ss_pred HHHHHHHHHCCCEEEE---ECCH-HHHHHHHhccCCCEEEEECCCC-CCCHH---HHHHHHHcCCCCCEEEEeCC
Confidence 3344444455665431 2333 4444556667799999986532 22211 23344444456999988543
No 342
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=24.93 E-value=2.7e+02 Score=22.42 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEEe-----ccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEE
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLY-----WGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTI 169 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlv 169 (179)
-..++.+.+.+++.|.++.+.-. .|++.+.|.+.+++.+++-|.+.... ... ..+-++..+|+|-+
T Consensus 66 ~saMr~fa~~L~~~G~~v~y~~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~~P~----e~r-----~~~~l~~~gi~v~~ 136 (522)
T 3zxs_A 66 LAAMRKFARRLQERGFRVAYSRLDDPDTGPSIGAELLRRAAETGAREAVATRPG----DWR-----LIEALEAMPLPVRF 136 (522)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCTTCCSSHHHHHHHHHHHHTCCCEEEECCS----CHH-----HHHHHHHSSSCEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccCccccCCHHHHHHHHHHHcCCCEEEEeCcc----hHH-----HHHHHHHcCCcEEE
Confidence 35566677777778988887542 27899999999999999999997222 111 12333344899998
Q ss_pred EcCC
Q 041485 170 VKDP 173 (179)
Q Consensus 170 v~~~ 173 (179)
++..
T Consensus 137 ~~~~ 140 (522)
T 3zxs_A 137 LPDD 140 (522)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 8865
No 343
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=24.89 E-value=66 Score=22.71 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=24.8
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEe-cC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMG-SR 142 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg-~~ 142 (179)
+.+++...+.+.++...+. |.....-...+.+.++|.+|+| +.
T Consensus 155 ~~lr~~~~~~~~~~~I~Vd-GGI~~~~~~~~~~aGAd~~V~G~sa 198 (231)
T 3ctl_A 155 AELKAWREREGLEYEIEVD-GSCNQATYEKLMAAGADVFIVGTSG 198 (231)
T ss_dssp HHHHHHHHHHTCCCEEEEE-SCCSTTTHHHHHHHTCCEEEECTTT
T ss_pred HHHHHHHhccCCCceEEEE-CCcCHHHHHHHHHcCCCEEEEccHH
Confidence 4455555444444444443 4444444445555679999999 64
No 344
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=24.87 E-value=1.2e+02 Score=18.26 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=37.2
Q ss_pred HHHHHHHhhc-CCce-EEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhh---cCCCCEEEEcC
Q 041485 98 LDMLDAASKQ-KHVS-VVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLA---NASCPVTIVKD 172 (179)
Q Consensus 98 ~~~~~~~~~~-~~~~-~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~---~~~~pVlvv~~ 172 (179)
.+.+...+.. .|.. +.. -....+..+..+...+|+|++...-.. ...+ .....+-. ...+||+++-.
T Consensus 21 ~~~l~~~L~~~~~~~~v~~----~~~~~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~ 92 (143)
T 3cnb_A 21 ADMLTQFLENLFPYAKIKI----AYNPFDAGDLLHTVKPDVVMLDLMMVG-MDGF---SICHRIKSTPATANIIVIAMTG 92 (143)
T ss_dssp HHHHHHHHHHHCTTCEEEE----ECSHHHHHHHHHHTCCSEEEEETTCTT-SCHH---HHHHHHHTSTTTTTSEEEEEES
T ss_pred HHHHHHHHHhccCccEEEE----ECCHHHHHHHHHhcCCCEEEEecccCC-CcHH---HHHHHHHhCccccCCcEEEEeC
Confidence 3344445554 5665 332 223455566667778999999965322 2211 23344443 24589998865
Q ss_pred C
Q 041485 173 P 173 (179)
Q Consensus 173 ~ 173 (179)
.
T Consensus 93 ~ 93 (143)
T 3cnb_A 93 A 93 (143)
T ss_dssp S
T ss_pred C
Confidence 4
No 345
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=24.82 E-value=55 Score=25.24 Aligned_cols=56 Identities=7% Similarity=0.010 Sum_probs=37.9
Q ss_pred ChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCCCC
Q 041485 120 DARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDPSA 175 (179)
Q Consensus 120 ~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~~~ 175 (179)
...+.+.+.+++.++|-||.-..............+...+.+...+|+|.+-.+..
T Consensus 321 ~r~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~~gIP~l~ie~D~~ 376 (408)
T 3o3m_A 321 RMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFDGDQA 376 (408)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEESSCHHHHTTHHHHHHHHHHHHCCCEEEEEECSS
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcccHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 45677888999999999998765444433222222334556778999999975554
No 346
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=24.57 E-value=53 Score=18.92 Aligned_cols=20 Identities=10% Similarity=0.217 Sum_probs=10.9
Q ss_pred HHHHHHHHhCCCCEEEEecC
Q 041485 123 DKLCEAVEAMKLDSLVMGSR 142 (179)
Q Consensus 123 ~~i~~~a~~~~~dlvVlg~~ 142 (179)
+...+..+..++.|+|+...
T Consensus 17 ~~v~kai~~gkaklViiA~D 36 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKD 36 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETT
T ss_pred HHHHHHHHcCCeeEEEEeCC
Confidence 44555555555666666543
No 347
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=24.56 E-value=1.8e+02 Score=20.27 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhH--HHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARD--KLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
++.+.+.+.+++.|..+.+....+++.. ..++.....++|-||+.......... .. ..+....+||+++...
T Consensus 18 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~~-~~~~~~~iPvV~~~~~ 91 (283)
T 2ioy_A 18 TLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVT-----AI-KEANSKNIPVITIDRS 91 (283)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHH-----HH-HHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHH-----HH-HHHHHCCCeEEEecCC
Confidence 4555566666667877665443345443 34455557789999986432211111 11 2345668999988543
No 348
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=24.33 E-value=1.2e+02 Score=18.11 Aligned_cols=21 Identities=5% Similarity=0.200 Sum_probs=12.7
Q ss_pred hHHHHHHHHhCCCCEEEEecC
Q 041485 122 RDKLCEAVEAMKLDSLVMGSR 142 (179)
Q Consensus 122 ~~~i~~~a~~~~~dlvVlg~~ 142 (179)
.+.+.+..+..++.+||+...
T Consensus 24 ~~~v~kai~~gka~lViiA~D 44 (101)
T 3v7q_A 24 EDLVIKEIRNARAKLVLLTED 44 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETT
T ss_pred hhhhHHHHhcCceeEEEEecc
Confidence 345555666666666666654
No 349
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=24.27 E-value=2.3e+02 Score=21.40 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=37.9
Q ss_pred HhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccc-cccccchh-HHHhhcCCCCEEEEcC
Q 041485 104 ASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQ-RVLLGSVS-NHVLANASCPVTIVKD 172 (179)
Q Consensus 104 ~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~-~~~~gs~~-~~il~~~~~pVlvv~~ 172 (179)
.+.+.|++++... ...+...+++.++|.|++|...-..-. ---.|+-. .-+.++..+|++++-+
T Consensus 201 eL~~~GI~vtlI~-----Dsa~~~~M~~~~Vd~VivGAd~V~aNGv~NKiGT~~lAl~Ak~~~vPfyV~a~ 266 (351)
T 1t5o_A 201 ELMEDGIDVTLIT-----DSMVGIVMQKGMVDKVIVGADRIVRDAVFNKIGTYTVSVVAKHHNIPFYVAAP 266 (351)
T ss_dssp HHHHTTCCEEEEC-----GGGHHHHHHTTCCSEEEECCSEEETTEEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHhCCCCEEEEe-----hhHHHHHhhcCCCCEEEECccchhhcCcccccCHHHHHHHHHHcCCCEEEeCc
Confidence 3456688887543 223344566678999999987421111 11235433 3345666799999844
No 350
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=24.24 E-value=1.7e+02 Score=19.79 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=24.4
Q ss_pred HHHHHhhc---CCceEEEEEeccChhHHHHHH----HHhCCCCEEEEe
Q 041485 100 MLDAASKQ---KHVSVVAKLYWGDARDKLCEA----VEAMKLDSLVMG 140 (179)
Q Consensus 100 ~~~~~~~~---~~~~~~~~~~~g~~~~~i~~~----a~~~~~dlvVlg 140 (179)
.+...+++ .|.++......+|-.+.|.+. +.+.++|+||..
T Consensus 38 ~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 38 NLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp HHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEc
Confidence 34555555 687776655555554444443 333369999885
No 351
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=24.22 E-value=2.2e+02 Score=20.98 Aligned_cols=75 Identities=7% Similarity=-0.005 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCC--CCEEEE
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANAS--CPVTIV 170 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~--~pVlvv 170 (179)
.+..+.+.+.. -.+.+-.-+...+..+. +.+.|++.++|.+++-... ....+--+=..-..|...++ .||++.
T Consensus 64 ~~v~~~~v~~~--grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~-~~~s~~~l~~~f~~va~a~~~~lPiilY 140 (313)
T 3dz1_A 64 EAVATRFIKRA--KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPP-SLRTDEQITTYFRQATEAIGDDVPWVLQ 140 (313)
T ss_dssp HHHHHHHHHHC--TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCT-TCCSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred HHHHHHHHHHc--CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCC-CCCCHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 35555555555 24555443333344444 4467889999999886432 11121111124467888888 999998
Q ss_pred cC
Q 041485 171 KD 172 (179)
Q Consensus 171 ~~ 172 (179)
..
T Consensus 141 n~ 142 (313)
T 3dz1_A 141 DY 142 (313)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 352
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=24.21 E-value=1.2e+02 Score=21.01 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCCceEEEE-EeccChhHHHHHHHHhCCCCEEEEecC-CCcccccccccchhHHHhhcCCCCEEE
Q 041485 95 QDVLDMLDAASKQKHVSVVAK-LYWGDARDKLCEAVEAMKLDSLVMGSR-GLGTIQRVLLGSVSNHVLANASCPVTI 169 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~i~~~a~~~~~dlvVlg~~-~~~~~~~~~~gs~~~~il~~~~~pVlv 169 (179)
++.++.+.+.+++.+++.-+. -..|..+....+.. .+ .+|++..+ +...-...-+..-..+-|+....+|+.
T Consensus 37 ~~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~--~~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 110 (206)
T 1t57_A 37 ERVLELVGERADQLGIRNFVVASVSGETALRLSEMV--EG-NIVSVTHHAGFREKGQLELEDEARDALLERGVNVYA 110 (206)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTC--CS-EEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHc--cC-CEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 577777788888778763332 23366676666644 23 88888754 222222334556666667777777654
No 353
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=24.06 E-value=2.4e+02 Score=21.57 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=63.2
Q ss_pred CeEEEeecC-C-ccHHHHHHHHHHHhcC---CCCE-EEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhh
Q 041485 19 RSIGVALDF-S-KGSKLALKWAIDNLLE---KGDT-LYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVD 92 (179)
Q Consensus 19 ~~ILv~vd~-s-~~s~~al~~a~~la~~---~~~~-l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (179)
++++|.+.+ | +.-..++++|.++... .++. ..++-+....+.++ ..|-..-.-......+.- .
T Consensus 67 ~rllvIaGPCSIed~e~aleyA~~Lk~~~~~~~d~l~iVmR~yfeKPRTs--~GwKGli~dP~ld~Sf~g----~----- 135 (370)
T 1of8_A 67 DRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPRTT--VGWKGLINDPDVNNTFNI----N----- 135 (370)
T ss_dssp CSEEEEEECSCCCCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCCSS--SSCCCTTTCTTSSSCCCH----H-----
T ss_pred CCeEEEEeCCcCCCHHHHHHHHHHHHHHHHhhccCeEEEEEeccccccCC--ccccccccCCCcCCCcCH----H-----
Confidence 567666654 3 3455678888877654 2333 44455544443222 222211111111111111 0
Q ss_pred hhHHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEE---EEecCCCcccccccccchhHHHhhcCCCCEEE
Q 041485 93 LDQDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSL---VMGSRGLGTIQRVLLGSVSNHVLANASCPVTI 169 (179)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlv---Vlg~~~~~~~~~~~~gs~~~~il~~~~~pVlv 169 (179)
..-+++..+.....+.|+.+-+++..-... +|+ +|++ -+|.+.-.. + .-..+...++|||.+
T Consensus 136 ~GL~i~r~ll~~v~e~GlPvaTEvld~~~~----qyv----~Dllsw~aIGARt~es--q-----~hre~Asgl~~PVg~ 200 (370)
T 1of8_A 136 KGLQSARQLFVNLTNIGLPIGSEMLDTISP----QYL----ADLVSFGAIGARTTES--Q-----LHRELASGLSFPVGF 200 (370)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCSSSTH----HHH----GGGCSEEEECTTTTTC--H-----HHHHHHHTCSSCEEE
T ss_pred HHHHHHHHHHHHHHHcCCceEEeecCcccH----HHH----HHHHhhccccCccccc--H-----HHHHHHhcCCCeEEE
Confidence 011222233333358899998887665333 333 6777 677664211 1 123456688999987
Q ss_pred EcCC
Q 041485 170 VKDP 173 (179)
Q Consensus 170 v~~~ 173 (179)
=+..
T Consensus 201 Kngt 204 (370)
T 1of8_A 201 KNGT 204 (370)
T ss_dssp ECCT
T ss_pred cCCC
Confidence 6543
No 354
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=23.98 E-value=1.8e+02 Score=20.25 Aligned_cols=48 Identities=10% Similarity=0.026 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEE
Q 041485 123 DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIV 170 (179)
Q Consensus 123 ~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 170 (179)
..+.+...+.++|.|.+.............-....++.+..++||++.
T Consensus 38 ~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ 85 (247)
T 3tdn_A 38 RDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 85 (247)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEe
Confidence 455566666777777665432211111111134456666677777765
No 355
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=23.94 E-value=2.6e+02 Score=21.75 Aligned_cols=94 Identities=7% Similarity=-0.032 Sum_probs=56.7
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHH
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDV 97 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (179)
-++|-+.++.++.....++...+.+++.+..+............ ...
T Consensus 185 w~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~---------------------------------~d~ 231 (479)
T 3sm9_A 185 WTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIR---------------------------------KSY 231 (479)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CH---------------------------------HHH
T ss_pred CeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCCh---------------------------------HHH
Confidence 67888888888888888888888787788777665554432100 111
Q ss_pred HHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCC
Q 041485 98 LDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGL 144 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~ 144 (179)
...+.+.....+.++-+....++....+++.+++.+...+.+++.+.
T Consensus 232 ~~~l~~~i~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~~~wI~s~~w 278 (479)
T 3sm9_A 232 DSVIRELLQKPNARVVVLFMRSDDSRELIAAASRANASFTWVASDGW 278 (479)
T ss_dssp HHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTCCCEEEECTTT
T ss_pred HHHHHHHHhcCCCeEEEEEcChHHHHHHHHHHHHhCCEEEEEEechh
Confidence 11222333444555554444445566777778887777777776543
No 356
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=23.89 E-value=1e+02 Score=20.21 Aligned_cols=39 Identities=15% Similarity=0.015 Sum_probs=30.5
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
.+.++|.++.|..+...++ +++.|+..|+++..+.-...
T Consensus 110 ~~Dvvi~iS~sG~t~~~~~-~~~~ak~~g~~vi~iT~~~~ 148 (188)
T 1tk9_A 110 EKDVLIGISTSGKSPNVLE-ALKKAKELNMLCLGLSGKGG 148 (188)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEEEGGG
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCCCC
Confidence 6899999999998887664 55668888998877766443
No 357
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.84 E-value=1.2e+02 Score=17.97 Aligned_cols=16 Identities=0% Similarity=-0.041 Sum_probs=7.3
Q ss_pred HHHHHHHhCCCCEEEE
Q 041485 124 KLCEAVEAMKLDSLVM 139 (179)
Q Consensus 124 ~i~~~a~~~~~dlvVl 139 (179)
.|..+|++.++.+++.
T Consensus 48 ~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 48 DIYYYAKLSDIPVYEF 63 (99)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCCEEEe
Confidence 3344455555554333
No 358
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=23.84 E-value=1.9e+02 Score=21.09 Aligned_cols=46 Identities=9% Similarity=-0.234 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccCh------------hHHHHHHHHhCCCCEEEEecCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDA------------RDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~------------~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
.+.+.+.+.+++.|.+++..-...-+ ...+.+.+.+ +|.||+++..
T Consensus 76 ~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~--ADgiV~aSP~ 133 (279)
T 2fzv_A 76 LAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEW--SEGQVWCSPE 133 (279)
T ss_dssp HHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHH--CSEEEEEEEE
T ss_pred HHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHH--CCeEEEEcCc
Confidence 44444555555567766653332211 4566677777 9999999753
No 359
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=23.77 E-value=2.4e+02 Score=21.37 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=23.4
Q ss_pred CccHHHHHHHHHHHhcCC-CCEEEEEEEeCC
Q 041485 28 SKGSKLALKWAIDNLLEK-GDTLYIIHIKLP 57 (179)
Q Consensus 28 s~~s~~al~~a~~la~~~-~~~l~ll~v~~~ 57 (179)
...+.+.+++|+++|++. ..+|+++|=...
T Consensus 156 ~~~~eRiar~AF~~A~~r~rkkVt~v~KaNv 186 (349)
T 3blx_A 156 RPKTERIARFAFDFAKKYNRKSVTAVHKANI 186 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEeCCcc
Confidence 455788999999999987 567888876544
No 360
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=23.54 E-value=1.9e+02 Score=20.22 Aligned_cols=71 Identities=10% Similarity=0.149 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
.+.+.+.+.+.+.|..+......+++. ..+++.....++|-||+....... .. .-..+....+||+++...
T Consensus 37 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~~------~~~~~~~~~iPvV~~~~~ 109 (293)
T 2iks_A 37 RIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE-HP------FYQRWANDPFPIVALDRA 109 (293)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTT-CH------HHHTTTTSSSCEEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc-HH------HHHHHHhCCCCEEEECCc
Confidence 566666777777888776544334443 345566667789999986442211 10 112345567999988643
No 361
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=23.46 E-value=1.6e+02 Score=19.33 Aligned_cols=67 Identities=15% Similarity=0.255 Sum_probs=36.7
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
+.+...+...|..+.... .+. .+.++.++...+|+|++...-. ...++ .....+-...++||+++-.
T Consensus 27 ~~l~~~L~~~g~~v~~~~--~~~-~~al~~~~~~~~dlvi~D~~~p-~~~g~---~~~~~l~~~~~~pii~lt~ 93 (205)
T 1s8n_A 27 MDLAEMLREEGYEIVGEA--GDG-QEAVELAELHKPDLVIMDVKMP-RRDGI---DAASEIASKRIAPIVVLTA 93 (205)
T ss_dssp HHHHHHHHHTTCEEEEEE--SSH-HHHHHHHHHHCCSEEEEESSCS-SSCHH---HHHHHHHHTTCSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEe--CCH-HHHHHHHhhcCCCEEEEeCCCC-CCChH---HHHHHHHhcCCCCEEEEec
Confidence 344445555566543222 333 4444556667799999986532 22221 2344555555679988843
No 362
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=23.34 E-value=2e+02 Score=20.24 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhcCCc-eEEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 95 QDVLDMLDAASKQKHV-SVVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~-~~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
..+.+.+.+.+.+.|. ++......+++. ...++.....++|-||+......... .. -+.+....+||+++.
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-----~~-~~~~~~~~iPvV~~~ 91 (309)
T 2fvy_A 18 SVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAG-----TV-IEKARGQNVPVVFFN 91 (309)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHH-----HH-HHHHHTTTCCEEEES
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhH-----HH-HHHHHHCCCcEEEec
Confidence 3566667777778886 666544344443 34455666778999998643221111 11 233556789999986
Q ss_pred CC
Q 041485 172 DP 173 (179)
Q Consensus 172 ~~ 173 (179)
..
T Consensus 92 ~~ 93 (309)
T 2fvy_A 92 KE 93 (309)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 363
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=23.31 E-value=1.6e+02 Score=19.26 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=21.2
Q ss_pred hcC-CceEEEEEeccChhHHHHHHHHh----CCCCEEEEe
Q 041485 106 KQK-HVSVVAKLYWGDARDKLCEAVEA----MKLDSLVMG 140 (179)
Q Consensus 106 ~~~-~~~~~~~~~~g~~~~~i~~~a~~----~~~dlvVlg 140 (179)
++. |.++.......|-.+.|.+..++ .++|+||..
T Consensus 39 ~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 78 (167)
T 1uuy_A 39 EKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTL 78 (167)
T ss_dssp TTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred ccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 444 77776655555555555544333 479999885
No 364
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=23.30 E-value=1.2e+02 Score=17.60 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=31.1
Q ss_pred hHHHHHHHHhhcCCCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEe
Q 041485 4 TLNKLIFFFKMASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIK 55 (179)
Q Consensus 4 ~~~~~~~~~~m~~~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~ 55 (179)
.+.+++..|+.....-++|+.++.++ -++.|.++|+.....+.--.+.
T Consensus 37 elkkyleefrkesqnikvlilvsnde----eldkakelaqkmeidvrtrkvt 84 (110)
T 2kpo_A 37 ELKKYLEEFRKESQNIKVLILVSNDE----ELDKAKELAQKMEIDVRTRKVT 84 (110)
T ss_dssp HHHHHHHHHTSSTTSEEEEEEESSHH----HHHHHHHHHHHTTCCEEEEECS
T ss_pred HHHHHHHHHHhhccCeEEEEEEcChH----HHHHHHHHHHhhceeeeeeecC
Confidence 46677887777643456777776554 3666777777777666655443
No 365
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=23.27 E-value=68 Score=19.93 Aligned_cols=44 Identities=9% Similarity=0.099 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCceEEEEEecc-ChhHHHH-HHHHhCCCCEEEEecCCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWG-DARDKLC-EAVEAMKLDSLVMGSRGL 144 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g-~~~~~i~-~~a~~~~~dlvVlg~~~~ 144 (179)
+.+.+.+++.|++++++.... .+...|. +.+.. +|+||+.....
T Consensus 26 eaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~--Ad~VIiA~d~~ 71 (111)
T 2kyr_A 26 QALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAE--ATIIIHSVAVT 71 (111)
T ss_dssp HHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHH--CSEEEEEESSC
T ss_pred HHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHh--CCEEEEEeCCC
Confidence 345566667787777655332 2222222 34566 99999987643
No 366
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=23.16 E-value=1.2e+02 Score=19.84 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=26.2
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
.+.|++..|+.+....-+..+++.++..+..+..+.+-..
T Consensus 123 ~~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~igvG~~ 162 (178)
T 2xgg_A 123 PKLVIGMTDGESDSDFRTVRAAKEIRELGGIVTVLAVGHY 162 (178)
T ss_dssp CEEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEEECC--
T ss_pred CEEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEcCCc
Confidence 4567777788766554455666667777888888777544
No 367
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=23.11 E-value=1.4e+02 Score=21.16 Aligned_cols=36 Identities=6% Similarity=0.002 Sum_probs=20.8
Q ss_pred CCeEEEeecCCccHHHHHHHHHH-HhcCCCCEEEEEE
Q 041485 18 NRSIGVALDFSKGSKLALKWAID-NLLEKGDTLYIIH 53 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~-la~~~~~~l~ll~ 53 (179)
++.|+|.--.+...+..+-.++- .+++.+-++..+.
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 46777776666666655554443 3334566665554
No 368
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=23.08 E-value=2.5e+02 Score=21.30 Aligned_cols=132 Identities=10% Similarity=0.094 Sum_probs=69.6
Q ss_pred CeEEEeecC-C-ccHHHHHHHHHHHhcC----CCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhh
Q 041485 19 RSIGVALDF-S-KGSKLALKWAIDNLLE----KGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVD 92 (179)
Q Consensus 19 ~~ILv~vd~-s-~~s~~al~~a~~la~~----~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (179)
++++|.+.+ | +.-..++++|.+++.. .+.-+.++.+....+.++ ..|-..+.-......+.-.+-
T Consensus 49 ~rllVIaGPCSied~eq~leyA~~Lk~~~~~~~d~l~~vmR~y~~KPRTs--~g~kGL~nDP~ld~s~~i~~G------- 119 (346)
T 3tqk_A 49 DRVAVVVGPCSIHDPAAAIEYATKLKEQVKKFHKDILIIMRVYFEKPRTT--IGWKGFINDPDLDNSYNINKG------- 119 (346)
T ss_dssp CSEEEEEECSSCSCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCCSS--CSCCCTTTCTTSSSCCCHHHH-------
T ss_pred CCEEEEEecCccCCHHHHHHHHHHHHHHHhhhcccceEEeeecccCCCCC--cCccccccCCCCCCCccHHHH-------
Confidence 567777764 3 3455678888887644 244566777666544332 122211111111111111111
Q ss_pred hhHHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 93 LDQDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
-.+...+.....+.|+.+-+++..-...+ |..+. +|.+.+|.+.-.. + .-..++..+++||++=+.
T Consensus 120 --L~~~R~ll~~~~e~GLpiatE~ld~~~~q----yv~dl-vs~~aIGARt~en--q-----~hre~asg~s~PVg~Kng 185 (346)
T 3tqk_A 120 --LRLARNLLSDLTNMGLPCATEFLDVITPQ----YFAEL-ITWGAIGARTVES--Q-----VHRELASGLSASIGFKNA 185 (346)
T ss_dssp --HHHHHHHHHHHHHTTCCEEEECCSSSGGG----GTGGG-CSEEEECGGGTTC--H-----HHHHHHTTCSSEEEEECC
T ss_pred --HHHHHHHHHHHHhcCCCEEEEecCcCCHH----HHHHH-hheeeeCcccccC--H-----HHHHHhcCCCCceEEeCC
Confidence 12222222234677999988887654444 33333 7888999874322 1 114567788999988654
Q ss_pred C
Q 041485 173 P 173 (179)
Q Consensus 173 ~ 173 (179)
.
T Consensus 186 t 186 (346)
T 3tqk_A 186 T 186 (346)
T ss_dssp T
T ss_pred C
Confidence 3
No 369
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=22.93 E-value=1.3e+02 Score=17.93 Aligned_cols=70 Identities=7% Similarity=0.070 Sum_probs=35.4
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc---CCCCEEEEcCCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN---ASCPVTIVKDPS 174 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv~~~~ 174 (179)
+.+...+...|.... ....+..+.+........+|+|++...- ....++ .....+-.. ..+||+++....
T Consensus 19 ~~l~~~L~~~g~~~v--~~~~~~~~a~~~~~~~~~~dlvi~D~~~-p~~~g~---~~~~~lr~~~~~~~~pii~~s~~~ 91 (129)
T 3h1g_A 19 RIIKNTLSRLGYEDV--LEAEHGVEAWEKLDANADTKVLITDWNM-PEMNGL---DLVKKVRSDSRFKEIPIIMITAEG 91 (129)
T ss_dssp HHHHHHHHHTTCCCE--EEESSHHHHHHHHHHCTTCCEEEECSCC-SSSCHH---HHHHHHHTSTTCTTCCEEEEESCC
T ss_pred HHHHHHHHHcCCcEE--EEeCCHHHHHHHHHhCCCCCEEEEeCCC-CCCCHH---HHHHHHHhcCCCCCCeEEEEeCCC
Confidence 344445555565311 1224445555444444579999997552 222211 123333332 358999986543
No 370
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=22.93 E-value=2.4e+02 Score=21.02 Aligned_cols=88 Identities=7% Similarity=-0.127 Sum_probs=51.9
Q ss_pred eEEEeecCCc---cHHHHHHHHHHHhcC-CCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhH
Q 041485 20 SIGVALDFSK---GSKLALKWAIDNLLE-KGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQ 95 (179)
Q Consensus 20 ~ILv~vd~s~---~s~~al~~a~~la~~-~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (179)
++++|-.+.. .....++...+.+.. ....+.++|...... .+
T Consensus 221 ~~i~p~Hg~~~~~~~~~~l~~~~~~~~~~~~~~i~i~y~S~~Gn----------------------------------T~ 266 (398)
T 1ycg_A 221 KTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAKAVIAYDTMWLS----------------------------------TE 266 (398)
T ss_dssp SEEEESSSCBBCSCHHHHHHHHHHHHHTCCCSEEEEEECCSSSH----------------------------------HH
T ss_pred cEEECCCchhhhCCHHHHHHHHHHHhccCCcCeEEEEEECCccH----------------------------------HH
Confidence 5677776543 344566666666655 357787777654321 13
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRG 143 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~ 143 (179)
.+.+.+.+.+.+.|.+++..-........+.....+ +|.+|+|+..
T Consensus 267 ~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~d~ii~g~p~ 312 (398)
T 1ycg_A 267 KMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILD--ARAVLVGSPT 312 (398)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHH--CSEEEEECCC
T ss_pred HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH--CCEEEEECCc
Confidence 444445555555677666544444445555555666 8999999753
No 371
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=22.92 E-value=2.1e+02 Score=20.48 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcCC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKDP 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~~ 173 (179)
.....+...++..|..+.... .+. .+.++.+++..+|+|++-..=.....++ ..+..|-....+||+++...
T Consensus 171 ~~~~~l~~~L~~~g~~v~~~a--~~g-~eAl~~~~~~~~dlvl~D~~MPd~mdG~---e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 171 VIAADIEALVRELGHDVTDIA--ATR-GEALEAVTRRTPGLVLADIQLADGSSGI---DAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE--SSH-HHHHHHHHHCCCSEEEEESCCTTSCCTT---TTTHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHHhhccCceEEEEe--CCH-HHHHHHHHhCCCCEEEEcCCCCCCCCHH---HHHHHHHhcCCCCEEEEeCC
Confidence 334445566666676654222 333 3444566677899999986522122222 12233333338999999654
No 372
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=22.78 E-value=1.5e+02 Score=21.46 Aligned_cols=72 Identities=11% Similarity=-0.017 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhH--HHHHHHHhCC--CCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARD--KLCEAVEAMK--LDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~--~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
++.+.+.+.+.+.|.++......+++.. ..++.....+ +|-||+......... .. -..+....+||+++.
T Consensus 22 ~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~-----~~-~~~~~~~~iPvV~~~ 95 (332)
T 2rjo_A 22 AFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADAR-----VI-VEACSKAGAYVTTIW 95 (332)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHH-----HH-HHHHHHHTCEEEEES
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHH-----HH-HHHHHHCCCeEEEEC
Confidence 4555666666667777665444444433 3455555566 999988643211110 11 123445679998886
Q ss_pred CC
Q 041485 172 DP 173 (179)
Q Consensus 172 ~~ 173 (179)
..
T Consensus 96 ~~ 97 (332)
T 2rjo_A 96 NK 97 (332)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 373
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=22.57 E-value=1.3e+02 Score=19.99 Aligned_cols=39 Identities=18% Similarity=-0.010 Sum_probs=30.1
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
.+.++|.++.|.++...++ +++.|+..|+++..+.-...
T Consensus 116 ~~d~vI~iS~SG~t~~~~~-~~~~ak~~g~~vI~IT~~~~ 154 (198)
T 2xbl_A 116 EGDVLIGYSTSGKSPNILA-AFREAKAKGMTCVGFTGNRG 154 (198)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECSCC
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCeEEEEECCCC
Confidence 6889999999998887664 56678888998877765433
No 374
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=22.52 E-value=2.4e+02 Score=20.85 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhHH--HHHHHHhCCCCEEEEecCCCc--ccccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARDK--LCEAVEAMKLDSLVMGSRGLG--TIQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--i~~~a~~~~~dlvVlg~~~~~--~~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
+..+.+.+... ..+.+-.-+...+..+. +.+.+++.++|.+++-....- +..+--+=..-..|...++.||++..
T Consensus 68 ~v~~~~~~~~~-grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a~~lPiilYn 146 (318)
T 3qfe_A 68 QLIATARKAVG-PDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQSPLPVVIYN 146 (318)
T ss_dssp HHHHHHHHHHC-TTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC---CCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHhC-CCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 44444555442 24555444433344443 446788999998888654211 12111111244678888999999997
Q ss_pred CCC
Q 041485 172 DPS 174 (179)
Q Consensus 172 ~~~ 174 (179)
.+.
T Consensus 147 ~P~ 149 (318)
T 3qfe_A 147 FPG 149 (318)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 375
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=22.25 E-value=1.9e+02 Score=20.23 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=30.9
Q ss_pred HHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccch
Q 041485 101 LDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSV 155 (179)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~ 155 (179)
..+..++.|..+-..+..+.+.+.+..+... .|+|.+.+...+...+.|....
T Consensus 104 ~i~~i~~~G~k~gval~p~t~~e~l~~~l~~--~D~Vl~msv~pGf~Gq~f~~~~ 156 (228)
T 3ovp_A 104 LIKDIRENGMKVGLAIKPGTSVEYLAPWANQ--IDMALVMTVEPGFGGQKFMEDM 156 (228)
T ss_dssp HHHHHHHTTCEEEEEECTTSCGGGTGGGGGG--CSEEEEESSCTTTCSCCCCGGG
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHhcc--CCeEEEeeecCCCCCcccCHHH
Confidence 3344455677666555556777777666655 7888776554344444444444
No 376
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=22.20 E-value=1.4e+02 Score=18.16 Aligned_cols=48 Identities=10% Similarity=0.143 Sum_probs=24.6
Q ss_pred hHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc-CCCCEEEEcCC
Q 041485 122 RDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN-ASCPVTIVKDP 173 (179)
Q Consensus 122 ~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~~~ 173 (179)
....++.++...+|++++...-. ...++ .....+-.. ..+||+++-..
T Consensus 38 ~~~al~~~~~~~~dlvllD~~lp-~~~g~---~l~~~l~~~~~~~~ii~ls~~ 86 (141)
T 3cu5_A 38 GINAIQIALKHPPNVLLTDVRMP-RMDGI---ELVDNILKLYPDCSVIFMSGY 86 (141)
T ss_dssp HHHHHHHHTTSCCSEEEEESCCS-SSCHH---HHHHHHHHHCTTCEEEEECCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCC-CCCHH---HHHHHHHhhCCCCcEEEEeCC
Confidence 34445556667788888875422 11211 122333322 34788777543
No 377
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=22.11 E-value=1.2e+02 Score=17.41 Aligned_cols=65 Identities=6% Similarity=0.116 Sum_probs=34.5
Q ss_pred HHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc-CCCCEEEEcC
Q 041485 100 MLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN-ASCPVTIVKD 172 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~~ 172 (179)
.+...+...|..+.. ..+ ..+..+......+|++++...-. ...+. .....+-.. ..+|++++-.
T Consensus 16 ~l~~~l~~~~~~v~~---~~~-~~~a~~~~~~~~~dlvl~D~~l~-~~~g~---~~~~~l~~~~~~~~ii~~s~ 81 (116)
T 3a10_A 16 LLKEELQEEGYEIDT---AEN-GEEALKKFFSGNYDLVILDIEMP-GISGL---EVAGEIRKKKKDAKIILLTA 81 (116)
T ss_dssp HHHHHHHHTTCEEEE---ESS-HHHHHHHHHHSCCSEEEECSCCS-SSCHH---HHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHHHCCCEEEE---eCC-HHHHHHHHhcCCCCEEEEECCCC-CCCHH---HHHHHHHccCCCCeEEEEEC
Confidence 344444445665431 233 44555666777899999986532 12211 123333333 3488888854
No 378
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=22.03 E-value=2.2e+02 Score=20.36 Aligned_cols=71 Identities=7% Similarity=-0.042 Sum_probs=49.3
Q ss_pred HHHHHhcCCCCEEEEEEEeCCCCCcccccccCCCCCCCCCchhhhhHHHHHHhhhhhhHHHHHHHHHHhhcCCceEEEEE
Q 041485 37 WAIDNLLEKGDTLYIIHIKLPQGDESRNLLWSDTGSPLIPLEEFRDQEVMKQYEVDLDQDVLDMLDAASKQKHVSVVAKL 116 (179)
Q Consensus 37 ~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (179)
.|..+|...|+.-.-+|..++.+--. ..-+..+++.+ +.++.
T Consensus 29 ~aA~~ae~aGAdgITvHlReDrRHI~--------------------------------d~Dv~~L~~~~---~~~lN--- 70 (243)
T 1m5w_A 29 QAAFIAEQAGADGITVHLREDRRHIT--------------------------------DRDVRILRQTL---DTRMN--- 70 (243)
T ss_dssp HHHHHHHTTTCSEEEEECCTTCSSSC--------------------------------HHHHHHHHHHC---SSEEE---
T ss_pred HHHHHHHHcCCCEEEeCCCCCcccCC--------------------------------HHHHHHHHHhc---CCCEE---
Confidence 45667888999989999999876321 23333444443 22222
Q ss_pred eccChhHHHHHHHHhCCCCEEEEecCCCc
Q 041485 117 YWGDARDKLCEAVEAMKLDSLVMGSRGLG 145 (179)
Q Consensus 117 ~~g~~~~~i~~~a~~~~~dlvVlg~~~~~ 145 (179)
.++.+.+++++.|.+.+++.+.+-...+.
T Consensus 71 lE~a~t~emi~ia~~~kP~~vtLVPE~r~ 99 (243)
T 1m5w_A 71 LEMAVTEEMLAIAVETKPHFCCLVPEKRQ 99 (243)
T ss_dssp EEECSSHHHHHHHHHHCCSEEEECCCCSS
T ss_pred eccCCCHHHHHHHHHcCCCEEEECCCCCC
Confidence 24788899999999999999999876444
No 379
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=21.88 E-value=2.3e+02 Score=20.38 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEE
Q 041485 123 DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIV 170 (179)
Q Consensus 123 ~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv 170 (179)
..|.+.+++.++|+|+.......+-.+...+..+....+..++|+++.
T Consensus 138 ~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~ 185 (273)
T 3dff_A 138 DDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLW 185 (273)
T ss_dssp HHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcCCCEEEe
Confidence 456677889999999986443333334445556666777777887766
No 380
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=21.82 E-value=3.2e+02 Score=22.06 Aligned_cols=48 Identities=10% Similarity=0.002 Sum_probs=31.6
Q ss_pred HHHHHhhcCCCCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeCCC
Q 041485 8 LIFFFKMASNNRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKLPQ 58 (179)
Q Consensus 8 ~~~~~~m~~~~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 58 (179)
.+.+.+...+.++++|++++.-.|.-++..+.+. .+.+++.+|+....
T Consensus 245 ~i~~ir~~g~~~~vvvalSGGvDSsv~a~ll~~~---~G~~v~~v~vd~g~ 292 (556)
T 3uow_A 245 ELKNIEKYKHDHYVIAAMSGGIDSTVAAAYTHKI---FKERFFGIFIDNGL 292 (556)
T ss_dssp HHHHHGGGTTTCEEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECSC
T ss_pred ceeeeeecCCCceEEEEcccCCCHHHHHHHHHHH---hCCeEEEEEEecCC
Confidence 3333333322689999999998887666555442 35688999986543
No 381
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=21.74 E-value=77 Score=22.54 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=14.5
Q ss_pred HhCCCCEEEEecCCCcccc
Q 041485 130 EAMKLDSLVMGSRGLGTIQ 148 (179)
Q Consensus 130 ~~~~~dlvVlg~~~~~~~~ 148 (179)
++.++|.||||..+...+.
T Consensus 171 ~~~gad~IVLGCTh~p~l~ 189 (245)
T 3qvl_A 171 KEDGSGAIVLGSGGMATLA 189 (245)
T ss_dssp HHSCCSEEEECCGGGGGGH
T ss_pred HhcCCCEEEECCCChHHHH
Confidence 3478999999998766444
No 382
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=21.74 E-value=2e+02 Score=19.63 Aligned_cols=67 Identities=9% Similarity=-0.024 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
++.+.+.+.+.+.|..+......+++. ..+++.....++|-+|+......... .+....+||+++..
T Consensus 19 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~----------~l~~~~~pvV~~~~ 87 (255)
T 1byk_A 19 LAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEE----------MLAHWQSSLVLLAR 87 (255)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCTT----------TSGGGSSSEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCccccHH----------HHHhcCCCEEEEcc
Confidence 556666677777787766544334443 34566677788998888643221111 12234578887754
No 383
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=21.72 E-value=2.1e+02 Score=20.02 Aligned_cols=71 Identities=6% Similarity=0.118 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChh--HHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDAR--DKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
..+.+.+.+.+++.|..+......+++. ...++.....++|-||+...... . ..... +....+||+++..
T Consensus 32 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-----~~~~~-l~~~~iPvV~~~~ 103 (289)
T 2fep_A 32 SELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNIT--D-----EHVAE-FKRSPVPIVLAAS 103 (289)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC--H-----HHHHH-HHHSSSCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC--H-----HHHHH-HHhcCCCEEEEcc
Confidence 3556666677777888766544334443 34556666778999988643211 1 11222 4467899999865
Q ss_pred C
Q 041485 173 P 173 (179)
Q Consensus 173 ~ 173 (179)
.
T Consensus 104 ~ 104 (289)
T 2fep_A 104 V 104 (289)
T ss_dssp C
T ss_pred c
Confidence 3
No 384
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=21.68 E-value=1.8e+02 Score=19.29 Aligned_cols=40 Identities=13% Similarity=0.024 Sum_probs=22.6
Q ss_pred HHHHHhh---cCCceEEEEEeccChhHHHHHH----HHhCCCCEEEEe
Q 041485 100 MLDAASK---QKHVSVVAKLYWGDARDKLCEA----VEAMKLDSLVMG 140 (179)
Q Consensus 100 ~~~~~~~---~~~~~~~~~~~~g~~~~~i~~~----a~~~~~dlvVlg 140 (179)
.+...++ +.|.++ .....+|-.+.|.+. +.+.++|+||..
T Consensus 29 ~l~~~l~~l~~~G~~v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVitt 75 (178)
T 2pbq_A 29 AIIDYLKDVIITPFEV-EYRVIPDERDLIEKTLIELADEKGCSLILTT 75 (178)
T ss_dssp HHHHHHHHHBCSCCEE-EEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHHHHhCCCEE-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 3444444 778887 434445544444443 332369999885
No 385
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=21.61 E-value=1.8e+02 Score=19.03 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=24.3
Q ss_pred HHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEe
Q 041485 103 AASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMG 140 (179)
Q Consensus 103 ~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg 140 (179)
..++..|+++++... +...+....+..++|+++.+
T Consensus 34 ~~~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 68 (226)
T 1wdn_A 34 AIAKELKLDYELKPM---DFSGIIPALQTKNVDLALAG 68 (226)
T ss_dssp HHHHHHTCCEEEEEE---CGGGHHHHHHTTSSSEEEEE
T ss_pred HHHHHhCCEEEEEEC---CHHHHHHHHhCCCCCEEEEc
Confidence 334444777776543 46678888889999999865
No 386
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=21.58 E-value=77 Score=24.35 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHHhcCCCCEEEEEEEeC
Q 041485 29 KGSKLALKWAIDNLLEKGDTLYIIHIKL 56 (179)
Q Consensus 29 ~~s~~al~~a~~la~~~~~~l~ll~v~~ 56 (179)
..+.+.+++|+++|++.+.+|+++|=..
T Consensus 179 ~~~eRIar~AFe~A~~rrkkVT~v~KaN 206 (375)
T 3vmk_A 179 KEIRRIAKIAFESAQGRRKKVTSVDKAN 206 (375)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECch
Confidence 4577889999999998888888887533
No 387
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=21.47 E-value=2.4e+02 Score=20.61 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhcCCceEEEEEeccChhH--HHHHHHHhCCCCEEEEecCCCcc--cccccccchhHHHhhcCCCCEEEEc
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYWGDARD--KLCEAVEAMKLDSLVMGSRGLGT--IQRVLLGSVSNHVLANASCPVTIVK 171 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~i~~~a~~~~~dlvVlg~~~~~~--~~~~~~gs~~~~il~~~~~pVlvv~ 171 (179)
+..+.+.+... ..+.+-.-+...+..+ ++.+.|++.++|.+++-...... ..+--+=..-..|...++.||++..
T Consensus 71 ~v~~~~~~~~~-gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn 149 (307)
T 3s5o_A 71 EVVSRVRQAMP-KNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYS 149 (307)
T ss_dssp HHHHHHHHTSC-TTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHcC-CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEe
Confidence 44444444432 2344443332234444 44567899999999886543221 1211111234678888999999986
Q ss_pred C
Q 041485 172 D 172 (179)
Q Consensus 172 ~ 172 (179)
.
T Consensus 150 ~ 150 (307)
T 3s5o_A 150 V 150 (307)
T ss_dssp C
T ss_pred C
Confidence 4
No 388
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=21.31 E-value=1.9e+02 Score=19.39 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=14.8
Q ss_pred EeccChhHHHHHHHHh---CCCCEEEEec
Q 041485 116 LYWGDARDKLCEAVEA---MKLDSLVMGS 141 (179)
Q Consensus 116 ~~~g~~~~~i~~~a~~---~~~dlvVlg~ 141 (179)
+..|+..+.+...... ..+|+|++..
T Consensus 125 ~~~~d~~~~~~~~~~~~~~~~~D~v~~d~ 153 (229)
T 2avd_A 125 LRLKPALETLDELLAAGEAGTFDVAVVDA 153 (229)
T ss_dssp EEESCHHHHHHHHHHTTCTTCEEEEEECS
T ss_pred EEEcCHHHHHHHHHhcCCCCCccEEEECC
Confidence 3446665554444332 4678888754
No 389
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=21.23 E-value=66 Score=24.58 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHHHhcCCCCEEEEEEEeC
Q 041485 29 KGSKLALKWAIDNLLEKGDTLYIIHIKL 56 (179)
Q Consensus 29 ~~s~~al~~a~~la~~~~~~l~ll~v~~ 56 (179)
..+.+..++|+++|++.+.+|+++|=..
T Consensus 167 ~~~eRIar~AFe~A~~rrkkVT~v~KaN 194 (361)
T 3udu_A 167 KEIERIARIAFESARIRKKKVHLIDKAN 194 (361)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECch
Confidence 3577889999999988888888887433
No 390
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=21.22 E-value=1.9e+02 Score=19.24 Aligned_cols=39 Identities=10% Similarity=0.233 Sum_probs=22.4
Q ss_pred CCCCEEEEecCCCcccccccccchhHHHhh-----cCCCCEEEEcCCC
Q 041485 132 MKLDSLVMGSRGLGTIQRVLLGSVSNHVLA-----NASCPVTIVKDPS 174 (179)
Q Consensus 132 ~~~dlvVlg~~~~~~~~~~~~gs~~~~il~-----~~~~pVlvv~~~~ 174 (179)
..+|+|++...- .....+ .....+-. ...+||+++-...
T Consensus 118 ~~~dlillD~~l-p~~~G~---el~~~lr~~~~~~~~~~piI~ls~~~ 161 (206)
T 3mm4_A 118 LPFDYIFMDCQM-PEMDGY---EATREIRKVEKSYGVRTPIIAVSGHD 161 (206)
T ss_dssp CSCSEEEEESCC-SSSCHH---HHHHHHHHHHHTTTCCCCEEEEESSC
T ss_pred CCCCEEEEcCCC-CCCCHH---HHHHHHHhhhhhcCCCCcEEEEECCC
Confidence 379999998653 222221 12233332 2569999997543
No 391
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=21.22 E-value=2.1e+02 Score=19.80 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSR 142 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~ 142 (179)
+++.+.+.+.+++.|++++...... ..........++|+.+.|..
T Consensus 142 ~~~a~~iq~~l~~iGi~v~i~~~~~---~~~~~~~~~~~~d~~~~~w~ 186 (258)
T 3lvu_A 142 QTVLEIYTRALERLGIAAQIEKVDN---AQYTARVAELDFDLTPFRRD 186 (258)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEEECH---HHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCeeEEEecCH---HHHHHHhccCCccEEEecCC
Confidence 3555667777777899888776532 23444457788999998864
No 392
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=21.19 E-value=1.5e+02 Score=18.18 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=24.5
Q ss_pred hhHHHHHHHHh-CCCCEEEEecCCCcccccccccchhHHHhhcC-CCCEEEEcCC
Q 041485 121 ARDKLCEAVEA-MKLDSLVMGSRGLGTIQRVLLGSVSNHVLANA-SCPVTIVKDP 173 (179)
Q Consensus 121 ~~~~i~~~a~~-~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~-~~pVlvv~~~ 173 (179)
...+..+..+. ..+|++++...-.. ...+ .....+-... .+||+++...
T Consensus 37 ~~~~a~~~l~~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 37 TVSDALAFLEADNTVDLILLDVNLPD-AEAI---DGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp SHHHHHHHHHTTCCCSEEEECC-------CH---HHHHHHHHHCTTSEEEEC---
T ss_pred CHHHHHHHHhccCCCCEEEEeCCCCC-CchH---HHHHHHHHhCCCCeEEEEeCC
Confidence 34455566666 78999999865321 1111 1233343333 4899888543
No 393
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=21.13 E-value=80 Score=24.13 Aligned_cols=30 Identities=7% Similarity=-0.072 Sum_probs=23.8
Q ss_pred CccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 28 SKGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 28 s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
...+.+.+++|+++|++.+.+|+++|=...
T Consensus 169 ~~~~eRiar~AFe~A~~rrkkVt~v~KaNv 198 (363)
T 1cnz_A 169 RFEIERIARIAFESARKRRRKVTSIDKANV 198 (363)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence 345788999999999988888888876444
No 394
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=21.12 E-value=1.6e+02 Score=20.19 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=31.2
Q ss_pred HHhhcCCCCeEEEeecC-CccHHHHHHHHHHHhc-CCCCEEEEEEEeCC
Q 041485 11 FFKMASNNRSIGVALDF-SKGSKLALKWAIDNLL-EKGDTLYIIHIKLP 57 (179)
Q Consensus 11 ~~~m~~~~~~ILv~vd~-s~~s~~al~~a~~la~-~~~~~l~ll~v~~~ 57 (179)
..+|.. .+.+++.+.. +..+. .+.|=++.|. ..+.+|.+++....
T Consensus 74 ReRI~~-Sk~vIllIs~~T~~s~-~v~wEIe~Ai~~~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 74 HTRLDN-SKNIILFLSSITANSR-ALREEMNYGIGTKGLPVIVIYPDYD 120 (189)
T ss_dssp HHHHHT-EEEEEEECCTTCCCCH-HHHHHHHHHTTTTCCCEEEEETTCC
T ss_pred HHHHHh-cCcEEEEEecCccccc-hhHHHHHHHHHhcCCcEEEEECCcc
Confidence 334443 3666666654 55554 8999889998 78999999988644
No 395
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=21.07 E-value=2.3e+02 Score=21.32 Aligned_cols=66 Identities=9% Similarity=0.037 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhcCCCCEEEEcC
Q 041485 95 QDVLDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLANASCPVTIVKD 172 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~~~~pVlvv~~ 172 (179)
.++.+.+.+.+.+.|..+...... .....++.....++|-||+... .......+....+||+++..
T Consensus 40 ~~l~~gi~~~a~~~g~~~~i~~~~--~~~~~i~~l~~~~vDGiIi~~~----------~~~~~~~l~~~~iPvV~i~~ 105 (412)
T 4fe7_A 40 RQVVEGVGEYLQASQSEWDIFIEE--DFRARIDKIKDWLGDGVIADFD----------DKQIEQALADVDVPIVGVGG 105 (412)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECC---CC--------CCCSEEEEETT----------CHHHHHHHTTCCSCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEecC--CccchhhhHhcCCCCEEEEecC----------ChHHHHHHhhCCCCEEEecC
Confidence 355666666677667666554422 2334466677778999998321 11123456677899999854
No 396
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=21.03 E-value=1.4e+02 Score=17.53 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=34.1
Q ss_pred HHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc---CCCCEEEEcC
Q 041485 100 MLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN---ASCPVTIVKD 172 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv~~ 172 (179)
.+...+...|..+.. ..+ ..+..+......+|++++...-.. .... .....+-.. ..+|++++-.
T Consensus 17 ~l~~~l~~~g~~v~~---~~~-~~~a~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~ 84 (127)
T 2jba_A 17 MVCFVLEQNGFQPVE---AED-YDSAVNQLNEPWPDLILLAWMLPG-GSGI---QFIKHLRRESMTRDIPVVMLTA 84 (127)
T ss_dssp HHHHHHHHTTCEEEE---ECS-HHHHHTTCSSSCCSEEEEESEETT-EEHH---HHHHHHHTSTTTTTSCEEEEEE
T ss_pred HHHHHHHHCCceEEE---eCC-HHHHHHHHhccCCCEEEEecCCCC-CCHH---HHHHHHHhCcccCCCCEEEEeC
Confidence 344444455665431 223 344445666778999999865221 1111 123344333 3589988854
No 397
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=20.85 E-value=82 Score=24.36 Aligned_cols=27 Identities=7% Similarity=0.075 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHHHhcCCCCEEEEEEEe
Q 041485 29 KGSKLALKWAIDNLLEKGDTLYIIHIK 55 (179)
Q Consensus 29 ~~s~~al~~a~~la~~~~~~l~ll~v~ 55 (179)
..+.+.+++|+++|++.+.+|+++|=.
T Consensus 186 ~~~eRIar~AFe~A~~rrkkVT~v~Ka 212 (390)
T 3u1h_A 186 EEIERIIRKAFELALTRKKKVTSVDKA 212 (390)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECT
T ss_pred HHHhHHHHHHHHHHHHcCCceEEEECC
Confidence 457788999999999888888888743
No 398
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=20.84 E-value=91 Score=18.20 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=34.0
Q ss_pred HHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc-CCCCEEEEcCC
Q 041485 101 LDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN-ASCPVTIVKDP 173 (179)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~~~ 173 (179)
+...+...|..+. .-.......+..+...+|++++...-.. .... .....+-.. ..+|++++-..
T Consensus 19 l~~~l~~~~~~v~----~~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1dc7_A 19 LERALAGAGLTCT----TFENGNEVLAALASKTPDVLLSDIRMPG-MDGL---ALLKQIKQRHPMLPVIIMTAH 84 (124)
T ss_dssp HHHHHTTTTCCCE----ECCCTTHHHHHSSSCCCSCEEECSCSSH-HHHC---STHHHHHHHCTTSCCCCBCCS
T ss_pred HHHHHHhCCcEEE----EeCCHHHHHHHHhcCCCCEEEEeeecCC-CCHH---HHHHHHHhhCCCCCEEEEecC
Confidence 3444444555432 2223344556667778999999865321 1211 233444333 34888887543
No 399
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=20.46 E-value=1.5e+02 Score=17.84 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=35.7
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc---CCCCEEEEcCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN---ASCPVTIVKDP 173 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv~~~ 173 (179)
+.+...+...|..+.. ..+ ..+.++..+...+|++++...-. ...++ .....+-.. ..+||+++-..
T Consensus 17 ~~l~~~L~~~g~~v~~---~~~-~~~al~~l~~~~~dlvi~D~~l~-~~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 17 DVFVTMLERGGYRPIT---AFS-GEECLEALNATPPDLVLLDIMME-PMDGW---ETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HHHHHHHHHTTCEEEE---ESS-HHHHHHHHHHSCCSEEEEESCCS-SSCHH---HHHHHHHHSTTTTTSCEEEEESS
T ss_pred HHHHHHHHHcCceEEE---eCC-HHHHHHHHhccCCCEEEEeCCCC-CCCHH---HHHHHHHcCcccCCCCEEEEECC
Confidence 3344444555665431 233 34455666777899999986532 22211 123333332 35899988643
No 400
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=20.43 E-value=1.4e+02 Score=19.49 Aligned_cols=38 Identities=8% Similarity=0.050 Sum_probs=29.3
Q ss_pred CCeEEEeecCCccHHHHHHHHHHHhcCCCCEEEEEEEeC
Q 041485 18 NRSIGVALDFSKGSKLALKWAIDNLLEKGDTLYIIHIKL 56 (179)
Q Consensus 18 ~~~ILv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 56 (179)
.+.++|.++.+..+...++ +++.|+..|+++..+.-..
T Consensus 82 ~~d~vi~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~~ 119 (180)
T 1jeo_A 82 KDDLLILISGSGRTESVLT-VAKKAKNINNNIIAIVCEC 119 (180)
T ss_dssp TTCEEEEEESSSCCHHHHH-HHHHHHTTCSCEEEEESSC
T ss_pred CCCEEEEEeCCCCcHHHHH-HHHHHHHCCCcEEEEeCCC
Confidence 5789999999998877655 5577888899887776543
No 401
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=20.30 E-value=1.3e+02 Score=19.88 Aligned_cols=39 Identities=8% Similarity=-0.097 Sum_probs=27.8
Q ss_pred CCeEEEeec-CCccHHHHHHHHHHHhcCCCCEEEEEEEeC
Q 041485 18 NRSIGVALD-FSKGSKLALKWAIDNLLEKGDTLYIIHIKL 56 (179)
Q Consensus 18 ~~~ILv~vd-~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 56 (179)
|.+|||.+. .+..+....+...+-+...+.++.++.+.+
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 456776664 355677778888887777788888888755
No 402
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=20.26 E-value=1.4e+02 Score=21.07 Aligned_cols=49 Identities=12% Similarity=-0.096 Sum_probs=21.6
Q ss_pred HHHHHHHhhcCCC-CeEEEee------cCCccHHHHHHHHHHHhcCCCCEEEEEEEeC
Q 041485 6 NKLIFFFKMASNN-RSIGVAL------DFSKGSKLALKWAIDNLLEKGDTLYIIHIKL 56 (179)
Q Consensus 6 ~~~~~~~~m~~~~-~~ILv~v------d~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 56 (179)
.+|-.++.|...| ++|+|.+ |+..... +-...+..++.+.+++++....
T Consensus 10 ~~~~~~~~~~~~M~kkV~ill~~~~~~dG~e~~E--~~~p~~vL~~aG~~V~~~S~~~ 65 (242)
T 3l3b_A 10 GTLEAQTQGPGSMALNSAVILAGCGHMDGSEIRE--AVLVMLELDRHNVNFKCFAPNK 65 (242)
T ss_dssp --------------CEEEEECCCSSTTTSCCHHH--HHHHHHHHHHTTCEEEEEECSS
T ss_pred hhhhhhhcccccccCEEEEEEecCCCCCCeeHHH--HHHHHHHHHHCCCEEEEEecCC
Confidence 3445555555434 8999988 5444333 2233344445678888877643
No 403
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=20.21 E-value=1.9e+02 Score=18.93 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=38.4
Q ss_pred HHHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc-CCCCEEEEcCCC
Q 041485 98 LDMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN-ASCPVTIVKDPS 174 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~-~~~pVlvv~~~~ 174 (179)
.+.+...+...|..+.. .. ...+..+......+|++++...-. ...++ .....+-.. ..+||+++-...
T Consensus 17 ~~~l~~~L~~~g~~v~~---~~-~~~~al~~~~~~~~dlvl~D~~lp-~~~g~---~~~~~l~~~~~~~~ii~ls~~~ 86 (208)
T 1yio_A 17 REGLRNLLRSAGFEVET---FD-CASTFLEHRRPEQHGCLVLDMRMP-GMSGI---ELQEQLTAISDGIPIVFITAHG 86 (208)
T ss_dssp HHHHHHHHHTTTCEEEE---ES-SHHHHHHHCCTTSCEEEEEESCCS-SSCHH---HHHHHHHHTTCCCCEEEEESCT
T ss_pred HHHHHHHHHhCCceEEE---cC-CHHHHHHhhhccCCCEEEEeCCCC-CCCHH---HHHHHHHhcCCCCCEEEEeCCC
Confidence 34445555556765442 22 344555666777899999986532 22211 233444433 349999986544
No 404
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=20.20 E-value=86 Score=23.89 Aligned_cols=29 Identities=7% Similarity=-0.070 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 29 KGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 29 ~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
..+.+.+++|+++|+..+.+|+++|=...
T Consensus 165 ~~~eRiar~AFe~A~~rrkkVt~v~KaNv 193 (358)
T 1a05_A 165 DEIRRIAHVAFRAAQGRRKQLCSVDKANV 193 (358)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence 45788899999999988888888875444
No 405
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=20.17 E-value=87 Score=23.99 Aligned_cols=29 Identities=7% Similarity=-0.057 Sum_probs=23.6
Q ss_pred ccHHHHHHHHHHHhcCCCCEEEEEEEeCC
Q 041485 29 KGSKLALKWAIDNLLEKGDTLYIIHIKLP 57 (179)
Q Consensus 29 ~~s~~al~~a~~la~~~~~~l~ll~v~~~ 57 (179)
..+.+.+++|+++|++.+.+|+++|=...
T Consensus 174 ~~~eRIar~AFe~A~~rrkkVt~v~KaNv 202 (366)
T 1vlc_A 174 KTVERIARTAFEIAKNRRKKVTSVDKANV 202 (366)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECCcc
Confidence 45788999999999998888888876444
No 406
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=20.07 E-value=85 Score=21.50 Aligned_cols=63 Identities=5% Similarity=0.056 Sum_probs=35.9
Q ss_pred hhcCCceEEEEEeccChhHHHHHHHHhCC--CCEEEEecCCCcccccc--cccchhH-HHhhcCCCCEEEEcC
Q 041485 105 SKQKHVSVVAKLYWGDARDKLCEAVEAMK--LDSLVMGSRGLGTIQRV--LLGSVSN-HVLANASCPVTIVKD 172 (179)
Q Consensus 105 ~~~~~~~~~~~~~~g~~~~~i~~~a~~~~--~dlvVlg~~~~~~~~~~--~~gs~~~-~il~~~~~pVlvv~~ 172 (179)
+.+.|++++... . .++...+++.+ +|++++|...-..-... -.|+-.- -+.++..+|++++-+
T Consensus 26 L~~~gI~vtlI~--D---sa~~~~m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~Ak~~~vPf~V~a~ 93 (191)
T 1w2w_B 26 LVYDKIPSTLIT--D---SSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFGIKFFVVAP 93 (191)
T ss_dssp HHHHTCCBEEBC--G---GGHHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHHHHHTCEEEEECC
T ss_pred HHHcCCCEEEEe--c---hHHHHHHHhCCCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecc
Confidence 345588776432 2 23344456666 99999998742222211 2354333 334566799999854
No 407
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=20.05 E-value=2e+02 Score=19.12 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCC-ceEEEEEeccChhHHHHHHHHhCCCCEEEEe
Q 041485 98 LDMLDAASKQKH-VSVVAKLYWGDARDKLCEAVEAMKLDSLVMG 140 (179)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg 140 (179)
.+.+...++..| +++++... +...+....+..++|+++-+
T Consensus 34 ~dl~~~i~~~~g~~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 74 (246)
T 4eq9_A 34 IEVVRAIFKDSDKYDVKFEKT---EWSGVFAGLDADRYNMAVNN 74 (246)
T ss_dssp HHHHHHHHTTCSSEEEEEEEC---CHHHHHHHHHTTSCSEECSS
T ss_pred HHHHHHHHHHcCCceEEEEeC---CHHHHHHHHhCCCcCEEecc
Confidence 345566667778 88887664 66777888889999997744
No 408
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=20.03 E-value=2.3e+02 Score=19.70 Aligned_cols=45 Identities=9% Similarity=-0.027 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCceEEEEEec-cChhHHHHHHHHhCCCCEEEEecC
Q 041485 96 DVLDMLDAASKQKHVSVVAKLYW-GDARDKLCEAVEAMKLDSLVMGSR 142 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~a~~~~~dlvVlg~~ 142 (179)
.+.+.+.+.+++.|.+++..-.. +.-.+...+..++ +|.||++..
T Consensus 47 ~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~--aD~iv~~~P 92 (218)
T 3rpe_A 47 TLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLW--ADTIIYQMP 92 (218)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHH--CSEEEEEEE
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHh--CCEEEEECC
Confidence 45555566666667777765444 3334455556666 999999975
No 409
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=20.00 E-value=1.4e+02 Score=17.34 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=34.8
Q ss_pred HHHHHHhhcCCceEEEEEeccChhHHHHHHHHhCCCCEEEEecCCCcccccccccchhHHHhhc---CCCCEEEEcCC
Q 041485 99 DMLDAASKQKHVSVVAKLYWGDARDKLCEAVEAMKLDSLVMGSRGLGTIQRVLLGSVSNHVLAN---ASCPVTIVKDP 173 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dlvVlg~~~~~~~~~~~~gs~~~~il~~---~~~pVlvv~~~ 173 (179)
+.+...+...|..+.. ..+. .+.....+...+|++++...-. ...++ .....+-.. ..+|++++...
T Consensus 15 ~~l~~~L~~~~~~v~~---~~~~-~~a~~~~~~~~~dlvi~D~~l~-~~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 15 KLFHDLLEAQGYETLQ---TREG-LSALSIARENKPDLILMDIQLP-EISGL---EVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHHHHHHHHTTCEEEE---ESCH-HHHHHHHHHHCCSEEEEESBCS-SSBHH---HHHHHHHHSTTTTTSCEEEEC--
T ss_pred HHHHHHHHHcCcEEEE---eCCH-HHHHHHHhcCCCCEEEEeCCCC-CCCHH---HHHHHHHcCccccCCcEEEEECC
Confidence 3344444555665432 2333 4444566667799999986532 22211 123344332 35899988643
Done!