BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041488
         (402 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
 pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
          Length = 371

 Score =  219 bits (559), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/350 (37%), Positives = 196/350 (56%), Gaps = 17/350 (4%)

Query: 56  VTTKDGYILSMQRIPVGR-SGGEPGNRLPVFLQHGLLMDAVTWLLLPPEQSLAFLLADNG 114
           V T+DGYIL + RIP G+ + G  G R  VFLQHGLL  A  W+   P  SLAF+LAD G
Sbjct: 24  VVTEDGYILEVNRIPYGKKNSGNTGQRPVVFLQHGLLASATNWISNLPNNSLAFILADAG 83

Query: 115 YDVWLANTRGTKYSRGHVSLSPDDSAFWDWTWDELVAYDLPATLQHVHDQTGQKP-HYVG 173
           YDVWL N+RG  ++R ++  SPD   FW +++DE+  YDLPAT+  +  +TGQK  HYVG
Sbjct: 84  YDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFIVKKTGQKQLHYVG 143

Query: 174 HSLGTLIALASFSKDQPVNK-LRSAALLSPIAYVGQMTSPLAKNAADNFLAEAL--YWLG 230
           HS GT I   +FS +  + K +++   L+P+A V    S + K     F+ ++L  +  G
Sbjct: 144 HSQGTTIGFIAFSTNPSLAKRIKTFYALAPVATVKYTKSLINK---LRFVPQSLFKFIFG 200

Query: 231 LDEFDPRGEAVVKLLKNICQKPGVD--CTNLLNSFTGQNC-CLNSSIVDVFLEHEPQATS 287
              F P       L   +C +  ++  C+N L    G +    N+S +DV+L H P  TS
Sbjct: 201 DKIFYPHNFFDQFLATEVCSREMLNLLCSNALFIICGFDSKNFNTSRLDVYLSHNPAGTS 260

Query: 288 TKNMIHVAQMIREGTIAMYDYNNKEENKKHYGQPNPPLYNMTSIPHDLPLFLSYGGADAL 347
            +NM H  Q ++ G    YD+ +  +N+ HY Q  PP YN+T++  ++P+ +  GG D L
Sbjct: 261 VQNMFHWTQAVKSGKFQAYDWGSPVQNRMHYDQSQPPYYNVTAM--NVPIAVWNGGKDLL 318

Query: 348 SDVNDVKLLLESLNDHEGDKLVVQYRQDYAHADYVMGENAGQVLYEPLMA 397
           +D  DV LLL  L +    K +  Y     H D++   +A Q +Y  +++
Sbjct: 319 ADPQDVGLLLPKLPNLIYHKEIPFYN----HLDFIWAMDAPQEVYNDIVS 364


>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
           Phosphonate Inhibitor
 pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
           Phosphonate Inhibitor
          Length = 377

 Score =  219 bits (558), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/351 (37%), Positives = 198/351 (56%), Gaps = 19/351 (5%)

Query: 56  VTTKDGYILSMQRIPVGRSGGEPGNRLPV-FLQHGLLMDAVTWLLLPPEQSLAFLLADNG 114
           V T+DGYIL + RIP GR   E   R PV FLQHGLL  A  W+   P  SLAF+LAD G
Sbjct: 32  VVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAG 91

Query: 115 YDVWLANTRGTKYSRGHVSLSPDDSAFWDWTWDELVAYDLPATLQHVHDQTGQ-KPHYVG 173
           YDVWL N+RG  ++R ++  SPD   FW +++DE+  YDLPAT+  +  +TGQ K HYVG
Sbjct: 92  YDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTGQDKLHYVG 151

Query: 174 HSLGTLIALASFSKDQPVNK-LRSAALLSPIAYVGQMTSPLAK-NAADNFLAEALYWLGL 231
           HS GT I   +FS +  + K +++   L+P+A V    + + K     +FL + ++  G 
Sbjct: 152 HSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIF--GN 209

Query: 232 DEFDPRGEAVVKLLKNICQKPGVD--CTNLLNSFTGQNCC-LNSSIVDVFLEHEPQATST 288
             F P       L   +C +  VD  C+N L    G +   LN S +DV+L H P  TS 
Sbjct: 210 KIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVYLSHNPAGTSV 269

Query: 289 KNMIHVAQMIREGTIAMYDYNNKEENKKHYGQPNPPLYNMTSIPHDLPLFLSYGGADALS 348
           +N++H +Q ++ G    +D+ +  +N  HY Q  PP YN+T +   +P+ +  GG D L+
Sbjct: 270 QNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDM--HVPIAVWNGGNDLLA 327

Query: 349 DVNDVKLLLESLNDHEGDKLVVQYRQ--DYAHADYVMGENAGQVLYEPLMA 397
           D +DV LLL  L +      ++ +R+   Y H D++   +A Q +Y  +++
Sbjct: 328 DPHDVDLLLSKLPN------LIYHRKIPPYNHLDFIWAMDAPQAVYNEIVS 372


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,120,578
Number of Sequences: 62578
Number of extensions: 507587
Number of successful extensions: 1137
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1127
Number of HSP's gapped (non-prelim): 9
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)