BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>041494
MMPYKKKDLCRNFQRGSCQYGERCKFLHVTQQQPNPFGFGVQNNPQSKGTNNYNFGNKQN
QSKPFENKWTRFSPITGGGVPASRQPDNQPQSANHKCSDPDSCKRIIAEDFELERPLWKL
TCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMKFDNLLRN
PYTGPCNSALSGQSPFAAASPNAFSPTPQDSTAPSLSSFNQVGSLPSLEALTKFVDQLFS
GPLHHQIMPLANQVPFQIPARLQVLSEQTIFHRQVVVQS

High Scoring Gene Products

Symbol, full name Information P value
AT1G75340 protein from Arabidopsis thaliana 1.4e-57

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  041494
        (279 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2018452 - symbol:AT1G75340 species:3702 "Arabi...   592  1.4e-57   1
ASPGD|ASPL0000075245 - symbol:nup42 species:162425 "Emeri...   125  4.0e-05   1


>TAIR|locus:2018452 [details] [associations]
            symbol:AT1G75340 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005635 "nuclear
            envelope" evidence=IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=RCA] InterPro:IPR000571 Pfam:PF00642
            PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005635 GO:GO:0046872 GO:GO:0003677
            GO:GO:0008270 KO:K14321 EMBL:AC023754 EMBL:AY037195 EMBL:BT004555
            IPI:IPI00517380 PIR:H96783 RefSeq:NP_565108.2 UniGene:At.16256
            UniGene:At.68091 ProteinModelPortal:Q9FWS3 SMR:Q9FWS3 STRING:Q9FWS3
            PaxDb:Q9FWS3 PRIDE:Q9FWS3 DNASU:843870 EnsemblPlants:AT1G75340.1
            GeneID:843870 KEGG:ath:AT1G75340 TAIR:At1g75340 eggNOG:NOG269080
            HOGENOM:HOG000077477 InParanoid:Q94C30 OMA:NAFASFN PhylomeDB:Q9FWS3
            ProtClustDB:CLSN2680803 Genevestigator:Q9FWS3 InterPro:IPR026290
            PANTHER:PTHR11224 Uniprot:Q9FWS3
        Length = 435

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 119/229 (51%), Positives = 150/229 (65%)

Query:     6 KKDLCRNFQRGSCQYGERCKFLHVTQQQPN-PFGFGVQNNPQSK------GTNNYNFGNK 58
             +K+LCRNFQRGSC+YGE C+FLH  Q +PN PFGFG QN  Q +       +N + FG +
Sbjct:     2 RKELCRNFQRGSCRYGENCRFLHPQQAKPNNPFGFGTQNQQQQQQQQQQNSSNPFGFGVQ 61

Query:    59 QN-QSKP--FENKWTRF-SPITGGGVPAS-RQPDNQPQSANHKCSDPDSCKRIIAEDFEL 113
                 S+P  F+N W+R  S  TGGG  AS +Q   Q Q A+HKC+DP +CKR++ +DF+ 
Sbjct:    62 SGGSSRPNQFQNTWSRTASTPTGGGAAASTQQTGKQTQPADHKCTDPAACKRVMQDDFKN 121

Query:   114 ERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMK 173
             ERP+WKLTCYGHWK  PCD+ GDISYEELRA AY++AK G  L SIVERERNL NS + +
Sbjct:   122 ERPMWKLTCYGHWKYFPCDVTGDISYEELRAVAYEEAKRGIPLQSIVERERNLQNSKIAE 181

Query:   174 FDNLLRNPYTGPCNSALSGQXXXXXXXXXXXXXXXQ-DSTAPSLSSFNQ 221
             F+N LRNPY G   S  + Q               Q +S +P+ S FNQ
Sbjct:   182 FENFLRNPYKG---SVTANQSPFAATTPSIFPQSSQINSPSPAFSGFNQ 227


>ASPGD|ASPL0000075245 [details] [associations]
            symbol:nup42 species:162425 "Emericella nidulans"
            [GO:0034399 "nuclear periphery" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0031965 "nuclear
            membrane" evidence=IEA] [GO:0071963 "establishment or maintenance
            of cell polarity regulating cell shape" evidence=IEA] [GO:0030951
            "establishment or maintenance of microtubule cytoskeleton polarity"
            evidence=IEA] [GO:0040023 "establishment of nucleus localization"
            evidence=IEA] [GO:0031115 "negative regulation of microtubule
            polymerization" evidence=IEA] [GO:0031122 "cytoplasmic microtubule
            organization" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
            PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
            eggNOG:NOG12793 EMBL:BN001303 EMBL:AACD01000079 RefSeq:XP_662199.1
            EnsemblFungi:CADANIAT00005841 GeneID:2872391 KEGG:ani:AN4595.2
            HOGENOM:HOG000184796 OMA:AFGQASQ OrthoDB:EOG4GJ2Z6 Uniprot:Q5B4D5
        Length = 512

 Score = 125 (49.1 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 41/136 (30%), Positives = 66/136 (48%)

Query:    55 FGNK-QNQSKPFENKWT---RFSPITGGGVPASRQPDNQPQSANHKCSDPDSCKRIIAED 110
             FG++ +N+    +  +T   RF  ++ GG   SR    Q Q +  + ++       I  D
Sbjct:    14 FGDRCKNEHPRSQQTFTGGNRFGALSAGGGFNSRGFSGQNQQSKQEPANYGITTADIKAD 73

Query:   111 FELE--RPLWKLTCYGHWKNAPCDIVG----DISYEELRAAAYDDAKCGSSLHSIVERER 164
                   RP+W  +CYG  KNAP  + G    + S+EELR   Y+ A  G+   +I E E 
Sbjct:    74 LTAGEGRPIWVFSCYGPGKNAPRQLFGGPQREQSFEELRLRHYEAAAAGNPGPAIQEAE- 132

Query:   165 NLLNSNLMKFDNLLRN 180
             N+ N  + + + +LRN
Sbjct:   133 NMYNEAVNQMEVVLRN 148


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      279       264   0.00092  114 3  11 22  0.49    33
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  224 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.59u 0.09s 25.68t   Elapsed:  00:00:01
  Total cpu time:  25.59u 0.09s 25.68t   Elapsed:  00:00:01
  Start:  Fri May 10 16:13:01 2013   End:  Fri May 10 16:13:02 2013

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