BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041494
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FWS3|C3H16_ARATH Zinc finger CCCH domain-containing protein 16 OS=Arabidopsis
thaliana GN=At1g75340 PE=2 SV=2
Length = 435
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/229 (53%), Positives = 158/229 (68%), Gaps = 16/229 (6%)
Query: 6 KKDLCRNFQRGSCQYGERCKFLHVTQQQPN-PFGFGVQNNPQSK------GTNNYNFG-N 57
+K+LCRNFQRGSC+YGE C+FLH Q +PN PFGFG QN Q + +N + FG
Sbjct: 2 RKELCRNFQRGSCRYGENCRFLHPQQAKPNNPFGFGTQNQQQQQQQQQQNSSNPFGFGVQ 61
Query: 58 KQNQSKP--FENKWTRF--SPITGGGVPASRQPDNQPQSANHKCSDPDSCKRIIAEDFEL 113
S+P F+N W+R +P GG +++Q Q Q A+HKC+DP +CKR++ +DF+
Sbjct: 62 SGGSSRPNQFQNTWSRTASTPTGGGAAASTQQTGKQTQPADHKCTDPAACKRVMQDDFKN 121
Query: 114 ERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMK 173
ERP+WKLTCYGHWK PCD+ GDISYEELRA AY++AK G L SIVERERNL NS + +
Sbjct: 122 ERPMWKLTCYGHWKYFPCDVTGDISYEELRAVAYEEAKRGIPLQSIVERERNLQNSKIAE 181
Query: 174 FDNLLRNPYTGPCNSALSGQSPFAAASPNAFSPTPQ-DSTAPSLSSFNQ 221
F+N LRNPY G S + QSPFAA +P+ F + Q +S +P+ S FNQ
Sbjct: 182 FENFLRNPYKG---SVTANQSPFAATTPSIFPQSSQINSPSPAFSGFNQ 227
>sp|Q5Z807|C3H46_ORYSJ Zinc finger CCCH domain-containing protein 46 OS=Oryza sativa
subsp. japonica GN=Os06g0704300 PE=2 SV=1
Length = 390
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 143/259 (55%), Gaps = 49/259 (18%)
Query: 5 KKKDLCRNFQRGSCQYGERCKFLHVT--------QQQPNPFGFGVQNNPQSKGT------ 50
+++++CRNFQRGSC+YG +C++LH + Q +PNPFGFG + Q + +
Sbjct: 3 RRQEICRNFQRGSCKYGAQCRYLHASPHQQQQQQQAKPNPFGFGTGSRQQQQPSFGSQFQ 62
Query: 51 ---------NNYNFG---------NKQNQSKPFENKWTRFSPITGGGVPASRQPDNQPQS 92
N + FG N +KPF+NKW R A + P Q Q+
Sbjct: 63 QQQQQQQKPNPFGFGVQGANAQSRNAPGPAKPFQNKWVRDPSAPTKQTEAVQPP--QAQA 120
Query: 93 ANHKCSDPDSCKRIIAEDFELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKC 152
A+ C DP SC++ I+EDF+ E P+WKLTCY H +N PC+I GDIS+EELRA AY++ K
Sbjct: 121 AHTSCEDPQSCRQQISEDFKNEAPIWKLTCYAHLRNGPCNIKGDISFEELRAKAYEEGKQ 180
Query: 153 GSSLHSIVERERNLLNSNLMKFDNLLRNPYTGPCNSALSGQSP-------FAAASPNAFS 205
G SL SIVE ERNL N+ LM+F NLL NSA Q+P F N+
Sbjct: 181 GHSLQSIVEGERNLQNAKLMEFTNLL--------NSARPSQTPSFPTMSSFPEVKNNSSF 232
Query: 206 PTPQDSTAPSLSSFNQVGS 224
Q + P SSF+Q+G+
Sbjct: 233 GASQTNGPPVFSSFSQIGA 251
>sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1 OS=Caenorhabditis elegans
GN=pie-1 PE=1 SV=1
Length = 335
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 6 KKDLCRNFQRGSCQYGERCKFLHVTQQQ 33
++ +C NF+RG+C+YG RC+F+HV Q Q
Sbjct: 186 RRQICHNFERGNCRYGPRCRFIHVEQMQ 213
>sp|O74315|AMO1_SCHPO Nucleoporin-like protein amo1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=amo1 PE=4 SV=1
Length = 475
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 100 PDSCKRIIAEDFELERPLWKLTCYGHWKNAPCDIVGDISYEELRAAAYDDAKCGSSLHSI 159
P+ + I +D + +P W T Y +N P GD+S EELR AY AK +++ +
Sbjct: 63 PNRRMKDINDDLKNAKPQWPFTGYSVVENLPSIYEGDVSPEELRWWAY-QAKATNNMQAY 121
Query: 160 VERERNLLNSNLMKFDNLLRNP 181
+R++ L++ K + R+P
Sbjct: 122 EQRQKQLMDDVEAKAAAVKRSP 143
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 9 LCRNFQRGSCQYGERCKFLHVTQQQPNPFGFGVQNNPQSKGTNNYN 54
+CR FQRG C G+ CKF H ++ N G+G + + SK ++ N
Sbjct: 135 VCRAFQRGECTRGDSCKFSHDEKRAANT-GWGHEEDRSSKWDHDKN 179
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 9 LCRNFQRGSCQYGERCKFLHVTQQQPNPFGFGVQNNPQSK 48
+CR FQRG C G+ CKF H +++ G+G + + SK
Sbjct: 185 VCRAFQRGECTRGDSCKFSH-DEKRAATTGWGHEEDRSSK 223
>sp|Q6GLT5|MKRN1_XENLA Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis
GN=mkrn1 PE=2 SV=1
Length = 408
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 9 LCRNFQRGSCQYGERCKFLHVTQQQPNPFG 38
+CR FQRG C YG+RC++ H Q +P G
Sbjct: 68 ICRYFQRGCCAYGDRCRYEHNKPLQEDPTG 97
>sp|Q5NU13|MKRN2_TAKRU Probable E3 ubiquitin-protein ligase makorin-2 OS=Takifugu
rubripes GN=mkrn2 PE=2 SV=1
Length = 402
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 5 KKKDLCRNFQRGSCQYGERCKFLHVTQQQPNPFGF------GVQNNPQSKGTNNYNFGNK 58
K +C+ +QRG+C YGERC++ HV F G ++ ++G F ++
Sbjct: 32 KPSTICKFYQRGTCAYGERCRYDHVKLSSRGGGAFDMAGVGGARDGASTRGAAKKTFVHQ 91
Query: 59 QNQ 61
+ +
Sbjct: 92 ERE 94
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 38.1 bits (87), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 6 KKDLCRNFQRGSCQYGERCKFLHVTQQ 32
K +LC ++RG+C YG RC+F H Q+
Sbjct: 384 KTELCNKWERGACPYGARCRFAHGLQE 410
>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa
subsp. japonica GN=Os06g0618100 PE=2 SV=1
Length = 295
Score = 38.1 bits (87), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 6 KKDLCRNFQRGSCQYGERCKFLH 28
K LC NF +GSC +G+RC F H
Sbjct: 261 KTKLCENFNKGSCTFGDRCHFAH 283
>sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa
subsp. japonica GN=Os02g0194200 PE=2 SV=1
Length = 300
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 6 KKDLCRNFQRGSCQYGERCKFLH 28
K LC NF +GSC +G+RC F H
Sbjct: 267 KTKLCENFTKGSCTFGDRCHFAH 289
>sp|Q7XPK1|C3H31_ORYSJ Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa
subsp. japonica GN=Os04g0665700 PE=2 SV=1
Length = 309
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 4 YKKKDLCRNFQRGSCQYGERCKFLHVTQQQ 33
YK K LC NF +G+C +G+RC F H +Q
Sbjct: 276 YKTK-LCENFVKGTCTFGDRCHFAHGENEQ 304
>sp|E0X9N4|C3H69_ARATH Zinc finger CCCH domain-containing protein 69 OS=Arabidopsis
thaliana GN=At3g63550 PE=3 SV=1
Length = 350
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 8 DLCRNFQRGSCQYGERCKFLHVTQQQPNP 36
++C +Q+G C YG RC++ HV +P+P
Sbjct: 33 NICTYYQKGICSYGSRCRYEHVKASRPHP 61
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 3 PYKKKDLCRNFQR-GSCQYGERCKFLH-VTQQQPNPFGFGVQNNPQSKGTNN 52
P K +LCR F G C YG RC F+H +++P P G G + ++ GT +
Sbjct: 190 PKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSG-GASGDLRAFGTRD 240
Score = 34.7 bits (78), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 6 KKDLCRNFQR-GSCQYGERCKFLH 28
K +LCR F+ G+C+YGE+C+F H
Sbjct: 155 KTELCRPFEESGTCKYGEKCQFAH 178
>sp|Q5ACW2|CWC24_CANAL Pre-mRNA-splicing factor CWC24 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=CWC24 PE=3 SV=1
Length = 216
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Query: 8 DLCRNFQR-GSCQYGERCKFLHV 29
D+C++FQ+ G C YG+ CKFLHV
Sbjct: 102 DVCKDFQQIGYCGYGDTCKFLHV 124
>sp|Q9DD48|MKRN2_SERQU Probable E3 ubiquitin-protein ligase makorin-2 OS=Seriola
quinqueradiata GN=mkrn2 PE=2 SV=1
Length = 423
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 5 KKKDLCRNFQRGSCQYGERCKFLHV 29
K +C+ +QRG C YGERC++ H+
Sbjct: 32 KPSTICKFYQRGVCAYGERCRYDHI 56
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 9 LCRNFQRGSCQYGERCKFLHV 29
+CR +QRG C YG+RC++ H
Sbjct: 85 VCRYYQRGCCAYGDRCRYEHT 105
>sp|Q6CSS6|CWC24_KLULA Pre-mRNA-splicing factor CWC24 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=CWC24 PE=3 SV=1
Length = 229
Score = 35.4 bits (80), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Query: 8 DLCRNFQR-GSCQYGERCKFLH 28
D+C++FQ+ G C YG+ CKFLH
Sbjct: 114 DICKDFQKTGYCGYGDSCKFLH 135
>sp|P41000|CPS3_SCHPO Protein cps3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cps3 PE=1 SV=3
Length = 583
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 6 KKDLCRNFQRGSCQYGERCKFLHV 29
+K +C+ FQ+G+C++G +C HV
Sbjct: 66 EKTICKYFQKGNCKFGSKCALEHV 89
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 4 YKKKDLCRNFQRGS---CQYGERCKFLHVTQQQ 33
YK K LC+NF RG C YG RC+F+H T ++
Sbjct: 315 YKTK-LCKNFARGGTGFCPYGLRCEFVHPTDKE 346
>sp|Q6GLD9|MKRN2_XENTR Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus
tropicalis GN=mkrn2 PE=2 SV=1
Length = 418
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 5 KKKDLCRNFQRGSCQYGERCKFLHV 29
K +CR +QRG C YG RC++ HV
Sbjct: 32 KPSTVCRFYQRGQCAYGARCRYDHV 56
>sp|Q9DFG8|MKRN2_DANRE Probable E3 ubiquitin-protein ligase makorin-2 OS=Danio rerio
GN=mkrn2 PE=2 SV=2
Length = 414
Score = 35.0 bits (79), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 5 KKKDLCRNFQRGSCQYGERCKFLHV 29
K +C+ +QRG+C YG+RC++ H+
Sbjct: 32 KPSTICKYYQRGACAYGDRCRYDHI 56
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 6 KKDLCRNFQR-GSCQYGERCKFLHVTQQQPN 35
K +LCR F+ G C+YGE+C+F H + + N
Sbjct: 137 KTELCRPFEEAGECKYGEKCQFAHGSHELRN 167
>sp|Q6BYU0|CWC24_DEBHA Pre-mRNA-splicing factor CWC24 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CWC24 PE=3 SV=2
Length = 232
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 8 DLCRNF-QRGSCQYGERCKFLHVTQQ 32
D+C++F Q G C YG+ CKFLH+ +
Sbjct: 116 DVCKDFLQTGYCGYGDTCKFLHIRDE 141
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 6 KKDLCRNFQR-GSCQYGERCKFLH 28
K +LCR F+ G+C+YGE+C+F H
Sbjct: 133 KTELCRPFEESGACKYGEKCQFAH 156
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 3 PYKKKDLCRNFQR-GSCQYGERCKFLHVTQQQPNPFGFG 40
P K +LCR F G C YG RC F+H +++ G G
Sbjct: 168 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRQAPGAG 206
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 34.7 bits (78), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 6 KKDLCRNFQR-GSCQYGERCKFLH 28
K +LCR F+ G+C+YGE+C+F H
Sbjct: 103 KTELCRPFEESGACKYGEKCQFAH 126
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 3 PYKKKDLCRNFQR-GSCQYGERCKFLHVTQQQPNPFGFG 40
P K +LCR F G C YG RC +H +++ G G
Sbjct: 138 PKYKTELCRTFHTIGFCPYGPRCHLIHNAEERRQAPGAG 176
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 34.7 bits (78), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 6 KKDLCRNFQR-GSCQYGERCKFLH 28
K +LCR F+ G+C+YGE+C+F H
Sbjct: 135 KTELCRPFEENGACKYGEKCQFAH 158
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 3 PYKKKDLCRNFQR-GSCQYGERCKFLHVTQQQPNPFGFG 40
P K +LCR F G C YG RC F+H +++ G G
Sbjct: 170 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRQAPGAG 208
>sp|Q6AXL8|ZMAT5_DANRE Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5 PE=2 SV=1
Length = 173
Score = 34.7 bits (78), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 5 KKKDLCRNF-QRGSCQYGERCKFLHVTQQQPNPFGFGVQNNPQSKGTNNYNFGNKQNQSK 63
+ K++CR F Q G C +G C+F H++++Q + + + K + + ++++ +
Sbjct: 52 RSKEVCRKFVQTGQCVFGTSCRFSHMSEKQMKMLEQKIDDEKRQKEDPDQDGSSERSVDE 111
Query: 64 PFENKWTRFSPITGGGV 80
+ + + +T G V
Sbjct: 112 WLSRREKKLAALTSGRV 128
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 34.7 bits (78), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 6 KKDLCRNFQR-GSCQYGERCKFLH 28
K +LCR F+ G+C+YGE+C+F H
Sbjct: 128 KTELCRPFEESGTCKYGEKCQFAH 151
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 3 PYKKKDLCRNFQR-GSCQYGERCKFLHVTQQQ 33
P K +LCR F G C YG RC F+H ++
Sbjct: 163 PKYKTELCRTFHTIGFCPYGPRCHFIHNADER 194
>sp|Q96K80|ZC3HA_HUMAN Zinc finger CCCH domain-containing protein 10 OS=Homo sapiens
GN=ZC3H10 PE=1 SV=1
Length = 434
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 9 LCRNFQRGSCQYGERCKFLHV 29
+CR+F +G CQ G +CKF H+
Sbjct: 139 ICRDFLKGDCQRGAKCKFRHL 159
>sp|Q8R205|ZC3HA_MOUSE Zinc finger CCCH domain-containing protein 10 OS=Mus musculus
GN=Zc3h10 PE=2 SV=1
Length = 435
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 9 LCRNFQRGSCQYGERCKFLHV 29
+CR+F +G CQ G +CKF H+
Sbjct: 139 ICRDFLKGDCQRGAKCKFRHL 159
>sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 OS=Caenorhabditis elegans GN=mex-6 PE=3
SV=3
Length = 467
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 4 YKKKDLCRNFQRGS---CQYGERCKFLH 28
YK K LC+NF RG C YG RC+F+H
Sbjct: 318 YKTK-LCKNFARGGSGVCPYGLRCEFVH 344
>sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu
rubripes GN=mkrn1 PE=2 SV=1
Length = 429
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 9 LCRNFQRGSCQYGERCKFLHV 29
+C+ FQ+G+C +GERC+F H
Sbjct: 53 MCKFFQKGNCVFGERCRFEHC 73
>sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2
SV=1
Length = 481
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 9 LCRNFQRGSCQYGERCKFLH 28
+C+ FQRG C YG+RC++ H
Sbjct: 89 VCKYFQRGYCVYGDRCRYEH 108
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 3 PYKKKDLCRNFQR-GSCQYGERCKFLHVTQQQ 33
P K +LCR F G C YG RC F+H +++
Sbjct: 151 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEER 182
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 6 KKDLCRNFQR-GSCQYGERCKFLHVTQQ 32
K +LCR F+ G+C+YG++C+F H +
Sbjct: 116 KTELCRPFEENGACKYGDKCQFAHGIHE 143
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 3 PYKKKDLCRNFQR-GSCQYGERCKFLHVTQQQ 33
P K +LCR F G C YG RC F+H +++
Sbjct: 151 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEER 182
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 6 KKDLCRNFQR-GSCQYGERCKFLHVTQQ 32
K +LCR F+ G+C+YG++C+F H +
Sbjct: 116 KTELCRPFEENGACKYGDKCQFAHGIHE 143
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 3 PYKKKDLCRNFQR-GSCQYGERCKFLHVTQQQ 33
P K +LCR F G C YG RC F+H +++
Sbjct: 151 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEER 182
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 6 KKDLCRNFQR-GSCQYGERCKFLHVTQQ 32
K +LCR F+ G+C+YG++C+F H +
Sbjct: 116 KTELCRPFEENGACKYGDKCQFAHGIHE 143
>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1
SV=3
Length = 482
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 9 LCRNFQRGSCQYGERCKFLH 28
+C+ FQRG C YG+RC++ H
Sbjct: 89 VCKYFQRGYCIYGDRCRYEH 108
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 6 KKDLCRNFQ-RGSCQYGERCKFLHVTQQQPNP 36
K + C+N+Q G+C+YG +C+F H Q+ P
Sbjct: 328 KTEPCKNWQISGTCRYGSKCQFAHGNQELKEP 359
>sp|Q6FXX1|CWC24_CANGA Pre-mRNA-splicing factor CWC24 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CWC24 PE=3 SV=1
Length = 226
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 8 DLCRNF-QRGSCQYGERCKFLH 28
D+C++F Q G C YG+ CKFLH
Sbjct: 111 DVCKDFKQTGYCGYGDSCKFLH 132
>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
thaliana GN=At3g48440 PE=1 SV=1
Length = 448
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 13 FQRGSCQYGERCKFLHVTQQQPNPFGFGVQNNPQSKGTNNYNFG 56
+ GSC+YG CKF H P+P G ++P +G N + G
Sbjct: 214 MRNGSCKYGAECKFNH-----PDPTTIGGTDSPSFRGNNGVSIG 252
>sp|B0F0H3|MKRN2_XENLA Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus laevis
GN=mkrn2 PE=2 SV=2
Length = 409
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 5 KKKDLCRNFQRGSCQYGERCKFLHV 29
K +CR F RG C YG RC++ HV
Sbjct: 32 KPSTVCRFFLRGQCAYGTRCRYDHV 56
>sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon
nigroviridis GN=mkrn1 PE=3 SV=1
Length = 372
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 9 LCRNFQRGSCQYGERCKFLHVTQQQPNPF 37
+C+ FQ+G+C +GERC+F H + F
Sbjct: 53 ICKFFQKGNCVFGERCRFDHCKPTKNEEF 81
>sp|Q6K977|C3H19_ORYSJ Zinc finger CCCH domain-containing protein 19 OS=Oryza sativa
subsp. japonica GN=Os02g0831100 PE=2 SV=2
Length = 647
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 10 CRNFQRGSCQYGERCKFLHVTQQQPNP 36
C FQ+G C G+RC FLH+ Q +P
Sbjct: 115 CYYFQKGMCVKGDRCAFLHLPQATGSP 141
>sp|Q5ZA07|C3H41_ORYSJ E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp.
japonica GN=MKRN PE=2 SV=1
Length = 368
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 6 KKDLCRNFQRGSCQYGERCKFLHVTQQQPNPFGFGVQNNPQSKGT 50
K+ LC+ F G+C GE C+F H QPN Q S G+
Sbjct: 4 KRVLCKFFMHGACLKGEYCEFSHDWNDQPNNVCTFYQKGSCSYGS 48
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 8 DLCRNFQRGSCQYGERCKFLHV 29
++C +Q+GSC YG RC++ HV
Sbjct: 34 NVCTFYQKGSCSYGSRCRYDHV 55
>sp|F2Z3T4|MBNL2_RAT Muscleblind-like protein 2 OS=Rattus norvegicus GN=Mbnl2 PE=1 SV=1
Length = 373
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 6 KKDLCRNFQRGSCQYGER-CKFLH 28
K ++CR FQRG+C GE C+F H
Sbjct: 178 KLEVCREFQRGNCARGETDCRFAH 201
>sp|Q8C181|MBNL2_MOUSE Muscleblind-like protein 2 OS=Mus musculus GN=Mbnl2 PE=2 SV=2
Length = 373
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 6 KKDLCRNFQRGSCQYGER-CKFLH 28
K ++CR FQRG+C GE C+F H
Sbjct: 178 KLEVCREFQRGNCARGETDCRFAH 201
>sp|Q9NUK0|MBNL3_HUMAN Muscleblind-like protein 3 OS=Homo sapiens GN=MBNL3 PE=2 SV=2
Length = 354
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 1 MMPYKKKDLCRNFQRGSCQYGER-CKFLHVT 30
+M K ++CR FQRG+C GE C++ H T
Sbjct: 171 LMRSDKLEVCREFQRGNCTRGENDCRYAHPT 201
>sp|Q5GRY9|RPOBC_WOLTR Bifunctional DNA-directed RNA polymerase subunit beta-beta'
OS=Wolbachia sp. subsp. Brugia malayi (strain TRS)
GN=rpoBC PE=3 SV=1
Length = 2839
Score = 33.1 bits (74), Expect = 2.5, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 138 SYEELRAAAYDDAKCGSSLHSIVERERNLLNSNLMKFDNLLRN--PYTGP 185
+Y+ LR+ + CGS + SI R++ NSNL++F + LRN P P
Sbjct: 1227 AYDNLRSFLIEVYSCGSDV-SICNNIRDISNSNLIEFAHKLRNGIPVAAP 1275
>sp|Q9FG30|C3H52_ARATH Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis
thaliana GN=At5g06770 PE=2 SV=1
Length = 240
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 4 YKKKDLCRNFQRGSCQYGERCKFLH 28
YK K +C + +G+C YG+RC F H
Sbjct: 206 YKTK-ICDRYSKGNCTYGDRCHFAH 229
>sp|Q9C7C3|C3H36_ARATH Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis
thaliana GN=At3g12130 PE=2 SV=1
Length = 248
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 6 KKDLCRNFQRGSCQYGERCKFLH 28
K +C F +G+C +G+RC F H
Sbjct: 215 KTKICERFSKGNCTFGDRCHFAH 237
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,539,751
Number of Sequences: 539616
Number of extensions: 5086365
Number of successful extensions: 15423
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 15207
Number of HSP's gapped (non-prelim): 294
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)