Query 041494
Match_columns 279
No_of_seqs 171 out of 293
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 12:55:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rhk_C Cleavage and polyadenyl 97.9 3E-06 1E-10 63.5 1.3 27 5-31 14-40 (72)
2 2d9n_A Cleavage and polyadenyl 97.8 5.1E-06 1.7E-10 62.6 2.1 29 4-32 7-35 (77)
3 2cqe_A KIAA1064 protein; CCCH 97.8 7.5E-06 2.6E-10 64.7 2.0 25 5-29 11-35 (98)
4 1m9o_A Tristetraproline; Cys3H 97.6 1.8E-05 6E-10 58.5 2.2 28 5-32 10-38 (77)
5 2e5s_A Otthump00000018578; ZF- 97.5 1.4E-05 4.8E-10 63.3 0.5 29 4-32 17-46 (98)
6 3d2q_A Muscleblind-like protei 97.5 2.8E-05 9.6E-10 57.6 1.3 28 4-31 3-31 (70)
7 2d9m_A Zinc finger CCCH-type d 97.4 3E-05 1E-09 58.7 1.2 23 8-30 21-43 (69)
8 3d2n_A Muscleblind-like protei 97.4 5.8E-05 2E-09 58.3 2.0 27 5-31 7-34 (83)
9 2rpp_A Muscleblind-like protei 97.2 0.00011 3.8E-09 57.5 2.2 27 6-32 16-43 (89)
10 2d9n_A Cleavage and polyadenyl 97.1 0.00012 4.2E-09 55.0 1.5 27 5-32 36-63 (77)
11 2cqe_A KIAA1064 protein; CCCH 97.1 0.00016 5.5E-09 57.0 1.7 25 7-31 36-61 (98)
12 2rhk_C Cleavage and polyadenyl 97.0 0.0002 6.7E-09 53.6 1.5 27 5-32 42-69 (72)
13 3d2q_A Muscleblind-like protei 96.9 0.00017 5.8E-09 53.4 0.7 26 5-31 40-65 (70)
14 1m9o_A Tristetraproline; Cys3H 96.9 0.00014 4.7E-09 53.6 0.0 25 7-31 50-75 (77)
15 2e5s_A Otthump00000018578; ZF- 96.9 0.00019 6.3E-09 56.9 0.6 26 5-31 54-79 (98)
16 3u1l_A PRE-mRNA-splicing facto 95.7 0.0025 8.4E-08 57.3 1.1 26 7-32 70-95 (240)
17 3d2n_A Muscleblind-like protei 95.6 0.0034 1.2E-07 48.3 1.1 25 6-31 42-66 (83)
18 2rpp_A Muscleblind-like protei 94.8 0.0069 2.4E-07 47.3 0.7 25 6-31 50-74 (89)
19 3u9g_A Zinc finger CCCH-type a 90.7 0.069 2.3E-06 48.4 1.1 25 6-31 174-198 (229)
20 3mmy_B Nuclear pore complex pr 89.9 0.13 4.3E-06 37.5 1.8 15 135-149 39-53 (56)
21 2fc6_A Nuclear, target of EGR1 85.5 0.23 7.9E-06 35.4 0.8 26 6-31 19-45 (50)
22 3u9g_A Zinc finger CCCH-type a 81.1 0.47 1.6E-05 43.0 1.2 25 8-32 90-118 (229)
23 1f8p_A Neuropeptide Y (PNPY); 35.2 22 0.00075 23.8 2.1 29 129-163 4-32 (37)
24 2bf9_A Pancreatic hormone; tur 34.8 45 0.0015 22.2 3.6 28 129-162 4-31 (36)
25 2lhn_A Nuclear polyadenylated 40.8 8.3 0.00028 29.5 0.0 24 5-31 7-30 (80)
26 2i3s_B Checkpoint serine/threo 23.1 36 0.0012 22.5 1.6 9 136-144 19-27 (36)
27 2l60_A Peptide YY; GPCR ligand 22.9 57 0.002 22.2 2.5 15 135-150 14-28 (41)
28 1bba_A Bovine pancreatic polyp 22.0 67 0.0023 21.3 2.7 22 129-151 4-25 (36)
No 1
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.88 E-value=3e-06 Score=63.54 Aligned_cols=27 Identities=37% Similarity=0.968 Sum_probs=24.8
Q ss_pred CCcccccccccccccCCCcccccCCCC
Q 041494 5 KKKDLCRNFQRGSCQYGERCKFLHVTQ 31 (279)
Q Consensus 5 ~~~~vCrfF~~G~CrfG~~Crf~H~~~ 31 (279)
++.+||+||++|.|++|+.|+|.|...
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHEYD 40 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCSCC
T ss_pred CcCeeCHHHhcCCCCCCCCCCCccccc
Confidence 567899999999999999999999965
No 2
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=5.1e-06 Score=62.57 Aligned_cols=29 Identities=34% Similarity=0.844 Sum_probs=25.4
Q ss_pred CCCcccccccccccccCCCcccccCCCCC
Q 041494 4 YKKKDLCRNFQRGSCQYGERCKFLHVTQQ 32 (279)
Q Consensus 4 ~~~~~vCrfF~~G~CrfG~~Crf~H~~~~ 32 (279)
..+.+||+||++|.|++|++|+|.|....
T Consensus 7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 7 GEKTVVCKHWLRGLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp CCTTSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred CCcceeCHhHccCcCCCCCCCCCcccccc
Confidence 35678999999999999999999998753
No 3
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.77 E-value=7.5e-06 Score=64.67 Aligned_cols=25 Identities=36% Similarity=0.921 Sum_probs=23.6
Q ss_pred CCcccccccccccccCCCcccccCC
Q 041494 5 KKKDLCRNFQRGSCQYGERCKFLHV 29 (279)
Q Consensus 5 ~~~~vCrfF~~G~CrfG~~Crf~H~ 29 (279)
+++.+|+||++|.|++|++|+|.|.
T Consensus 11 ~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 11 KKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCCccCcccccCcCCCCCCCCCCCC
Confidence 5778999999999999999999998
No 4
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=97.65 E-value=1.8e-05 Score=58.45 Aligned_cols=28 Identities=39% Similarity=1.036 Sum_probs=24.3
Q ss_pred CCcccccccc-cccccCCCcccccCCCCC
Q 041494 5 KKKDLCRNFQ-RGSCQYGERCKFLHVTQQ 32 (279)
Q Consensus 5 ~~~~vCrfF~-~G~CrfG~~Crf~H~~~~ 32 (279)
.+..+|++|+ .|.|+||++|+|.|....
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~e 38 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHGLGE 38 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCCChh
Confidence 4568999996 899999999999998753
No 5
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=1.4e-05 Score=63.33 Aligned_cols=29 Identities=45% Similarity=1.016 Sum_probs=25.5
Q ss_pred CCCcccccccccccccCCC-cccccCCCCC
Q 041494 4 YKKKDLCRNFQRGSCQYGE-RCKFLHVTQQ 32 (279)
Q Consensus 4 ~~~~~vCrfF~~G~CrfG~-~Crf~H~~~~ 32 (279)
.++..|||+|++|.|+.|+ .|+|.|+...
T Consensus 17 ~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~ 46 (98)
T 2e5s_A 17 TDKLEVCREFQRGNCARGETDCRFAHPADS 46 (98)
T ss_dssp SSEEEBCSHHHHTCCSSHHHHCSSBCCSSC
T ss_pred hhhhhhhHHHhcCcCCCCCCCCCCcCCchh
Confidence 3567899999999999999 8999999763
No 6
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=97.47 E-value=2.8e-05 Score=57.61 Aligned_cols=28 Identities=39% Similarity=1.032 Sum_probs=24.3
Q ss_pred CCCcccccccccccccCCC-cccccCCCC
Q 041494 4 YKKKDLCRNFQRGSCQYGE-RCKFLHVTQ 31 (279)
Q Consensus 4 ~~~~~vCrfF~~G~CrfG~-~Crf~H~~~ 31 (279)
..+..||++|++|.|+.|+ .|+|.|+..
T Consensus 3 ~~k~~vC~~f~~G~C~rg~~~C~f~H~~~ 31 (70)
T 3d2q_A 3 TDRLEVCREYQRGNCNRGENDCRFAHPAD 31 (70)
T ss_dssp -CEEEBCHHHHTTCCSSCTTTCSSBCCCT
T ss_pred cccchhCHHHhcCCCCCCCCCCCCccCcc
Confidence 3567899999999999999 599999864
No 7
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=3e-05 Score=58.69 Aligned_cols=23 Identities=35% Similarity=0.969 Sum_probs=21.7
Q ss_pred ccccccccccccCCCcccccCCC
Q 041494 8 DLCRNFQRGSCQYGERCKFLHVT 30 (279)
Q Consensus 8 ~vCrfF~~G~CrfG~~Crf~H~~ 30 (279)
.+|+.|+.|.|.||++|+|+|..
T Consensus 21 ~LC~~~~~G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 21 SICDRYMNGTCPEGNSCKFAHGN 43 (69)
T ss_dssp SBCHHHHHSCCSSCSSCSSBSSH
T ss_pred ccCcccCcCCCCCCCccCCcCCH
Confidence 79999999999999999999974
No 8
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.37 E-value=5.8e-05 Score=58.27 Aligned_cols=27 Identities=41% Similarity=0.976 Sum_probs=24.4
Q ss_pred CCcccccccccccccCCC-cccccCCCC
Q 041494 5 KKKDLCRNFQRGSCQYGE-RCKFLHVTQ 31 (279)
Q Consensus 5 ~~~~vCrfF~~G~CrfG~-~Crf~H~~~ 31 (279)
...+||++|++|.|.-|+ .|+|+|+..
T Consensus 7 ~~~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 7 LTLEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp GEEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred ccchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 356899999999999997 999999976
No 9
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=97.23 E-value=0.00011 Score=57.50 Aligned_cols=27 Identities=41% Similarity=1.009 Sum_probs=24.5
Q ss_pred CcccccccccccccCCC-cccccCCCCC
Q 041494 6 KKDLCRNFQRGSCQYGE-RCKFLHVTQQ 32 (279)
Q Consensus 6 ~~~vCrfF~~G~CrfG~-~Crf~H~~~~ 32 (279)
...|||.|++|.|.-|+ .|||+|+...
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence 46799999999999999 9999999763
No 10
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.00012 Score=54.97 Aligned_cols=27 Identities=30% Similarity=0.814 Sum_probs=24.2
Q ss_pred CCccccccccc-ccccCCCcccccCCCCC
Q 041494 5 KKKDLCRNFQR-GSCQYGERCKFLHVTQQ 32 (279)
Q Consensus 5 ~~~~vCrfF~~-G~CrfG~~Crf~H~~~~ 32 (279)
.++.+|+||++ |.|. |++|+|.|..+.
T Consensus 36 ~~~~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 36 TKMPECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp TTSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred CcCCCCcccCCCCccC-CCCeeccCCCcc
Confidence 35679999999 9999 999999999874
No 11
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.08 E-value=0.00016 Score=56.99 Aligned_cols=25 Identities=28% Similarity=0.697 Sum_probs=22.4
Q ss_pred cccccccc-cccccCCCcccccCCCC
Q 041494 7 KDLCRNFQ-RGSCQYGERCKFLHVTQ 31 (279)
Q Consensus 7 ~~vCrfF~-~G~CrfG~~Crf~H~~~ 31 (279)
..+|+||+ .|.|+||++|+|.|...
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 47899995 89999999999999964
No 12
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.01 E-value=0.0002 Score=53.59 Aligned_cols=27 Identities=30% Similarity=0.807 Sum_probs=24.4
Q ss_pred CCccccccccc-ccccCCCcccccCCCCC
Q 041494 5 KKKDLCRNFQR-GSCQYGERCKFLHVTQQ 32 (279)
Q Consensus 5 ~~~~vCrfF~~-G~CrfG~~Crf~H~~~~ 32 (279)
.++.+|+||++ |.|.+ ++|+|.|+.+.
T Consensus 42 ~~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 42 TKMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp TSCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred ccCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 45789999999 99999 99999999874
No 13
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=96.94 E-value=0.00017 Score=53.35 Aligned_cols=26 Identities=23% Similarity=0.807 Sum_probs=23.5
Q ss_pred CCcccccccccccccCCCcccccCCCC
Q 041494 5 KKKDLCRNFQRGSCQYGERCKFLHVTQ 31 (279)
Q Consensus 5 ~~~~vCrfF~~G~CrfG~~Crf~H~~~ 31 (279)
.++.+|++|++|+|..| .|+|.|+.+
T Consensus 40 ~~~~vC~~flkG~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 40 NTVTVCMDYIKGRCSRE-KCKYFHPPA 65 (70)
T ss_dssp TEEEBCHHHHTTCCCCT-TCCSBCCCH
T ss_pred CcceeccccCcCCCCCC-CcCeeCCHH
Confidence 46789999999999999 999999864
No 14
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=96.92 E-value=0.00014 Score=53.59 Aligned_cols=25 Identities=44% Similarity=1.190 Sum_probs=0.0
Q ss_pred ccccccc-ccccccCCCcccccCCCC
Q 041494 7 KDLCRNF-QRGSCQYGERCKFLHVTQ 31 (279)
Q Consensus 7 ~~vCrfF-~~G~CrfG~~Crf~H~~~ 31 (279)
..+|++| +.|.|+||++|+|.|...
T Consensus 50 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp --------------------------
T ss_pred CCcccchhhCcCCCCcCcCCCCCCCC
Confidence 4689855 589999999999999854
No 15
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.89 E-value=0.00019 Score=56.86 Aligned_cols=26 Identities=23% Similarity=0.792 Sum_probs=24.0
Q ss_pred CCcccccccccccccCCCcccccCCCC
Q 041494 5 KKKDLCRNFQRGSCQYGERCKFLHVTQ 31 (279)
Q Consensus 5 ~~~~vCrfF~~G~CrfG~~Crf~H~~~ 31 (279)
.++.+|++|++|+|..| +|+|.|+.+
T Consensus 54 ~~~~vC~~flkG~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 54 NTVTVCMDYIKGRCMRE-KCKYFHPPA 79 (98)
T ss_dssp CEEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred CccccchhhccCCCCCC-CcCccCChH
Confidence 57789999999999999 999999975
No 16
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=95.74 E-value=0.0025 Score=57.32 Aligned_cols=26 Identities=31% Similarity=0.770 Sum_probs=23.9
Q ss_pred cccccccccccccCCCcccccCCCCC
Q 041494 7 KDLCRNFQRGSCQYGERCKFLHVTQQ 32 (279)
Q Consensus 7 ~~vCrfF~~G~CrfG~~Crf~H~~~~ 32 (279)
.-+|-||.+|.|+.|+.|.|.|..|.
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSCCC
T ss_pred CeEcCccccCCCCCCCCCCccCCCCC
Confidence 35899999999999999999999885
No 17
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=95.55 E-value=0.0034 Score=48.32 Aligned_cols=25 Identities=28% Similarity=0.647 Sum_probs=23.0
Q ss_pred CcccccccccccccCCCcccccCCCC
Q 041494 6 KKDLCRNFQRGSCQYGERCKFLHVTQ 31 (279)
Q Consensus 6 ~~~vCrfF~~G~CrfG~~Crf~H~~~ 31 (279)
.+.+|++|++|+|..+ .|+|.|+..
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHPPP 66 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCCCH
T ss_pred ceeehhHhhhccccCC-CcceeCChH
Confidence 4789999999999999 899999975
No 18
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=94.75 E-value=0.0069 Score=47.29 Aligned_cols=25 Identities=28% Similarity=0.650 Sum_probs=23.2
Q ss_pred CcccccccccccccCCCcccccCCCC
Q 041494 6 KKDLCRNFQRGSCQYGERCKFLHVTQ 31 (279)
Q Consensus 6 ~~~vCrfF~~G~CrfG~~Crf~H~~~ 31 (279)
.+.+|..|++|+|..+ .|+|.|+.+
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHPPT 74 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred ceeeehhhhhCcCCCC-CcceecCHH
Confidence 5789999999999998 899999976
No 19
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=90.67 E-value=0.069 Score=48.38 Aligned_cols=25 Identities=32% Similarity=0.782 Sum_probs=18.6
Q ss_pred CcccccccccccccCCCcccccCCCC
Q 041494 6 KKDLCRNFQRGSCQYGERCKFLHVTQ 31 (279)
Q Consensus 6 ~~~vCrfF~~G~CrfG~~Crf~H~~~ 31 (279)
+.-||++|++|.|+| .+|+-.|...
T Consensus 174 kLHIC~~Fl~G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 174 RLHICEHFTRGNCSY-LNCLRSHNLM 198 (229)
T ss_dssp SBCSCHHHHTTCCCC-SSCSSCCCTT
T ss_pred ceeccchhhcCCcCC-CCccCccCcc
Confidence 345788888888888 6888888754
No 20
>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=89.93 E-value=0.13 Score=37.51 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHHHHH
Q 041494 135 GDISYEELRAAAYDD 149 (279)
Q Consensus 135 GD~SpEELRl~yYea 149 (279)
.+.|+|||||+=|++
T Consensus 39 ~~~S~EELR~eDY~~ 53 (56)
T 3mmy_B 39 ESKSLEELRLEDYQA 53 (56)
T ss_dssp TTSCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHc
Confidence 389999999999975
No 21
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=85.47 E-value=0.23 Score=35.41 Aligned_cols=26 Identities=31% Similarity=0.696 Sum_probs=22.7
Q ss_pred Ccccccccc-cccccCCCcccccCCCC
Q 041494 6 KKDLCRNFQ-RGSCQYGERCKFLHVTQ 31 (279)
Q Consensus 6 ~~~vCrfF~-~G~CrfG~~Crf~H~~~ 31 (279)
...||+-|- -|+|++|.+|.+.|...
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCC
Confidence 457899988 69999999999999764
No 22
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=81.12 E-value=0.47 Score=42.96 Aligned_cols=25 Identities=32% Similarity=0.703 Sum_probs=20.7
Q ss_pred ccccccccccccC----CCcccccCCCCC
Q 041494 8 DLCRNFQRGSCQY----GERCKFLHVTQQ 32 (279)
Q Consensus 8 ~vCrfF~~G~Crf----G~~Crf~H~~~~ 32 (279)
-+||||+-|+|+| +..|||.|....
T Consensus 90 HLCK~~l~G~C~~~~~~~~~Ck~SHdi~s 118 (229)
T 3u9g_A 90 HLCKLNLLGRCHYAQSQRNLCKYSHDVLS 118 (229)
T ss_dssp CCCHHHHTTCCGGGTCCSSCCSSCSCTTC
T ss_pred eechhhhcCcCCcccCCCCCcccccccCc
Confidence 4799999999943 478999999764
No 23
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=35.24 E-value=22 Score=23.79 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=19.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Q 041494 129 APCDIVGDISYEELRAAAYDDAKCGSSLHSIVERE 163 (279)
Q Consensus 129 ~P~~l~GD~SpEELRl~yYea~a~Gn~~qyi~e~E 163 (279)
+|...-+|-|+|||+ +||.+.. +||+-+.
T Consensus 4 kP~~Pg~~a~pEela-~Y~~~Lr-----~YinlvT 32 (37)
T 1f8p_A 4 KPDNPGEDAPAEDLA-RYYSALR-----HYINLIT 32 (37)
T ss_dssp CCCCCCSSCTTTTHH-HHHHHHH-----HHHHHHH
T ss_pred CCCCCCCCCCHHHHH-HHHHHHH-----HHHHHhc
Confidence 455445699999998 6666543 5665543
No 24
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=34.79 E-value=45 Score=22.17 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=18.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Q 041494 129 APCDIVGDISYEELRAAAYDDAKCGSSLHSIVER 162 (279)
Q Consensus 129 ~P~~l~GD~SpEELRl~yYea~a~Gn~~qyi~e~ 162 (279)
+|...-+|-++|||. +||.+.. +||+-+
T Consensus 4 kP~~PG~dA~~Eela-~Y~~~Lr-----hYiNlv 31 (36)
T 2bf9_A 4 QPTYPGDDAPVEDLI-RFYNDLQ-----QYLNVV 31 (36)
T ss_dssp CCCCCCTTSCHHHHH-HHHHHHH-----HHHHHH
T ss_pred CCCCCCCCCCHHHHH-HHHHHHH-----HHHHHH
Confidence 455555699999996 6776653 465543
No 25
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=40.77 E-value=8.3 Score=29.45 Aligned_cols=24 Identities=29% Similarity=0.663 Sum_probs=15.2
Q ss_pred CCcccccccccccccCCCcccccCCCC
Q 041494 5 KKKDLCRNFQRGSCQYGERCKFLHVTQ 31 (279)
Q Consensus 5 ~~~~vCrfF~~G~CrfG~~Crf~H~~~ 31 (279)
+..+.|||+. .|+. ..|.|.|+..
T Consensus 7 ~~~e~CKf~~--~Ctn-~~C~f~Hp~~ 30 (80)
T 2lhn_A 7 KSLEQCKFGT--HCTN-KRCKYRHARS 30 (80)
Confidence 5567788776 4555 5666666543
No 26
>2i3s_B Checkpoint serine/threonine-protein kinase; WD40 protein, beta-propeller, glebs motif, mitotic spindle checkpoint, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=23.13 E-value=36 Score=22.52 Aligned_cols=9 Identities=33% Similarity=0.479 Sum_probs=8.2
Q ss_pred CCCHHHHHH
Q 041494 136 DISYEELRA 144 (279)
Q Consensus 136 D~SpEELRl 144 (279)
++|+||||+
T Consensus 19 E~s~eEllA 27 (36)
T 2i3s_B 19 EFNTEEILA 27 (36)
T ss_dssp CCCHHHHHH
T ss_pred EecHHHHHH
Confidence 899999995
No 27
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=22.93 E-value=57 Score=22.22 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=10.9
Q ss_pred CCCCHHHHHHHHHHHH
Q 041494 135 GDISYEELRAAAYDDA 150 (279)
Q Consensus 135 GD~SpEELRl~yYea~ 150 (279)
+|-|||||| +||.+.
T Consensus 14 ~~aspEela-~Y~~~L 28 (41)
T 2l60_A 14 KKLSPEELN-RYYASL 28 (41)
T ss_dssp TTSCHHHHH-HHHHHH
T ss_pred CCCCHHHHH-HHHHHH
Confidence 489999998 555543
No 28
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=22.00 E-value=67 Score=21.33 Aligned_cols=22 Identities=9% Similarity=0.042 Sum_probs=15.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH
Q 041494 129 APCDIVGDISYEELRAAAYDDAK 151 (279)
Q Consensus 129 ~P~~l~GD~SpEELRl~yYea~a 151 (279)
+|...-+|-++|||. +||.+..
T Consensus 4 kP~~PG~dA~pEela-~Y~~~Lr 25 (36)
T 1bba_A 4 EPEYPGDNATPEQMA-QYAAELR 25 (36)
T ss_dssp CCCCCSSCSSTTHHH-HHHHHHH
T ss_pred CCCCCCCCCCHHHHH-HHHHHHH
Confidence 455455699999996 6666543
Done!