BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041497
(568 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 144/504 (28%), Positives = 240/504 (47%), Gaps = 56/504 (11%)
Query: 25 TGVTCGHRHQRVIGLDLRHQSIGGFLSPF--VGNLSFLRSINLANNSFRAEIPHEVG--- 79
+G C + LDL S+ G ++ +G+ S L+ +N+++N+ + P +V
Sbjct: 91 SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGL 145
Query: 80 NLFRLQNLTLTNNYFSGK--IPTNLSR-CSNLVKFEASNNKLAGESPAEIGNLLKFQLLN 136
L L+ L L+ N SG + LS C L S NK++G+ ++ + + L+
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLD 203
Query: 137 IAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP 196
++ N+ +P +G+ SALQ ++++GN+L G S L N+ NQF G PP
Sbjct: 204 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 262
Query: 197 INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLD 256
+ + SL+Y+ + N + G +P + L +SGN+ G++ + + L+ L
Sbjct: 263 LP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 321
Query: 257 INRNLFSGKVSIN-FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNR 315
++ N FSG++ ++ ++ L L+L N L ++ L L L SN
Sbjct: 322 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-----ASLLTLDLSSNN 376
Query: 316 F-GAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI----- 369
F G +LP N T+ + NN +G IP ++N L +L + FN L+ TI
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 370 -LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRK 428
L L+ L L N+L+G IP L + L +L+ NDL G IP + NC NL ++
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496
Query: 429 NKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL 488
N+ +G +P+ +G+L+NL L +S+N FSG IP L
Sbjct: 497 NRLTGEIPKW-------------------------IGRLENLAILKLSNNSFSGNIPAEL 531
Query: 489 G-CTSLEYLCMQDNSFTGSIPSTL 511
G C SL +L + N F G+IP+ +
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 150/556 (26%), Positives = 235/556 (42%), Gaps = 74/556 (13%)
Query: 40 DLRHQSIGGFLSPFVGNLSFLRSINL-----ANNSFRAEIPHEVGNLFRLQNLTLTNNYF 94
+L+H +I G + G++ R +NL ++N+F IP +G+ LQ+L ++ N
Sbjct: 176 ELKHLAISG--NKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 95 SGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASI-GNL 153
SG +S C+ L S+N+ G P L Q L++AEN G++P + G
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGAC 290
Query: 154 SALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP--PINNISSLEYIFIHRN 211
L ++++GN G +P L S + N FSG P + + L+ + + N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 212 IYHGSLP------------LDIGVN------LPNL--------RFFIISGNNLTGSLQDS 245
+ G LP LD+ N LPNL + + N TG + +
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 246 LSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTK 305
LSN + L L ++ N SG + + G L L L L N L +L ++
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK------T 464
Query: 306 LEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL 365
LE L+LD N +P L+N T + I+ NN+++G IP I L NL L + N
Sbjct: 465 LETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 366 AVTI------LKSLQMLFLHENVLQGTIPSFL--------GNLTMLTQRLLEVNDLLGNI 411
+ I +SL L L+ N+ GTIP+ + N + + ND +
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 583
Query: 412 PPSIGNCKNLILLTTRK-NKPSGTMPRQLPRIIT------------XXXXXXXXXXXXXG 458
GN + + + N+ S P + + G
Sbjct: 584 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 643
Query: 459 HFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSI 517
+ P E+G + L L++ N SG IP +G L L + N G IP +S+L +
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Query: 518 TELDLSRNNLSGHIPQ 533
TE+DLS NNLSG IP+
Sbjct: 704 TEIDLSNNNLSGPIPE 719
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 149/326 (45%), Gaps = 33/326 (10%)
Query: 34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNY 93
++ L L + G + +G+LS LR + L N EIP E+ + L+ L L N
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 94 FSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNL 153
+G+IP+ LS C+NL SNN+L GE P IG L +L ++ N G +PA +G+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 154 SALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIH---- 209
+L +++N N G IP+ I+ N I+ Y++I
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF--------------IAGKRYVYIKNDGM 580
Query: 210 RNIYHGS--LPLDIGVNLPNL-RFFIISGNNLT-----GSLQDSLSNATNLQKLDINRNL 261
+ HG+ L G+ L R + N+T G + N ++ LD++ N+
Sbjct: 581 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 640
Query: 262 FSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLP 321
SG + G + L LNLG N++ +++ + L +L L SN+ +P
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG------DLRGLNILDLSSNKLDGRIP 694
Query: 322 FSLANLSTTMTGIAFGNNQISGFIPD 347
+++ L T +T I NN +SG IP+
Sbjct: 695 QAMSAL-TMLTEIDLSNNNLSGPIPE 719
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 154/340 (45%), Gaps = 49/340 (14%)
Query: 233 ISGNNLTGSLQD--SLSNATNLQKLDINRNL--FSGKVSINFGGLQ--NLSWLNLGKNNL 286
+S N+L+G + SL + + L+ L+++ N F GKVS GGL+ +L L+L N++
Sbjct: 104 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS---GGLKLNSLEVLDLSANSI 160
Query: 287 -----------------------GTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS 323
G + + D+D ++ C LE L + SN F +PF
Sbjct: 161 SGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF- 215
Query: 324 LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI----LKSLQMLFLH 379
L + S + + N++SG I+ L L + NQ I LKSLQ L L
Sbjct: 216 LGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 274
Query: 380 ENVLQGTIPSFL-GNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQ 438
EN G IP FL G LT L N G +PP G+C L L N SG +P
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 439 LPRIITXXXXXXXXXXXXXGHFPAEVGKLK-NLVSLDISSNMFSGEIPTTLGCT----SL 493
+ G P + L +L++LD+SSN FSG I L C +L
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL-CQNPKNTL 393
Query: 494 EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 533
+ L +Q+N FTG IP TLS+ + L LS N LSG IP
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 61 RSINLANNSFRAEIPHEVGNLFRLQNL--------------TLTNNYFSGKIPTNLSRCS 106
R + + N+ + E H GNL Q + +T+ + G
Sbjct: 571 RYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 107 NLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRL 166
+++ + S N L+G P EIG++ +LN+ N + G +P +G+L L ++++ N+L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 167 GGRIPSTRSHVRNLISFNVGLNQFSGMFPPI 197
GRIP S + L ++ N SG P +
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 144/504 (28%), Positives = 240/504 (47%), Gaps = 56/504 (11%)
Query: 25 TGVTCGHRHQRVIGLDLRHQSIGGFLSPF--VGNLSFLRSINLANNSFRAEIPHEVG--- 79
+G C + LDL S+ G ++ +G+ S L+ +N+++N+ + P +V
Sbjct: 94 SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGL 148
Query: 80 NLFRLQNLTLTNNYFSGK--IPTNLSR-CSNLVKFEASNNKLAGESPAEIGNLLKFQLLN 136
L L+ L L+ N SG + LS C L S NK++G+ ++ + + L+
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLD 206
Query: 137 IAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP 196
++ N+ +P +G+ SALQ ++++GN+L G S L N+ NQF G PP
Sbjct: 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265
Query: 197 INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLD 256
+ + SL+Y+ + N + G +P + L +SGN+ G++ + + L+ L
Sbjct: 266 LP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324
Query: 257 INRNLFSGKVSIN-FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNR 315
++ N FSG++ ++ ++ L L+L N L ++ L L L SN
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-----ASLLTLDLSSNN 379
Query: 316 F-GAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI----- 369
F G +LP N T+ + NN +G IP ++N L +L + FN L+ TI
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 370 -LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRK 428
L L+ L L N+L+G IP L + L +L+ NDL G IP + NC NL ++
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 429 NKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL 488
N+ +G +P+ +G+L+NL L +S+N FSG IP L
Sbjct: 500 NRLTGEIPKW-------------------------IGRLENLAILKLSNNSFSGNIPAEL 534
Query: 489 G-CTSLEYLCMQDNSFTGSIPSTL 511
G C SL +L + N F G+IP+ +
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 139/550 (25%), Positives = 222/550 (40%), Gaps = 110/550 (20%)
Query: 39 LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98
LD+ + G S + + L+ +N+++N F IP L LQ L+L N F+G+I
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEI 285
Query: 99 PTNLS-RCSNLVKFEASNNKLAGESPAEIG----------------------NLLK---F 132
P LS C L + S N G P G LLK
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 133 QLLNIAENHLRGQLPASIGNLSA---------------------------LQEINVNGNR 165
++L+++ N G+LP S+ NLSA LQE+ + N
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 166 LGGRIPSTRSHVRNLISFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVN 224
G+IP T S+ L+S ++ N SG P + ++S L + + N+ G +P ++ +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MY 464
Query: 225 LPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKN 284
+ L I+ N+LTG + LSN TNL + ++ N +G++ G L+NL+ L L N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 285 NLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGF 344
+ +L +C L L L++N F +P ++ S + +
Sbjct: 525 SFSGNIPAELG------DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 345 IPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEV 404
DG+ + +EF + L L N +T R+
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR----------------NPCNITSRVYG- 621
Query: 405 NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEV 464
G+ P+ N +++ L N SG +P+ E+
Sbjct: 622 ----GHTSPTFDNNGSMMFLDMSYNMLSGYIPK-------------------------EI 652
Query: 465 GKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLS 523
G + L L++ N SG IP +G L L + N G IP +S+L +TE+DLS
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 524 RNNLSGHIPQ 533
NNLSG IP+
Sbjct: 713 NNNLSGPIPE 722
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 149/326 (45%), Gaps = 33/326 (10%)
Query: 34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNY 93
++ L L + G + +G+LS LR + L N EIP E+ + L+ L L N
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 94 FSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNL 153
+G+IP+ LS C+NL SNN+L GE P IG L +L ++ N G +PA +G+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 154 SALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIH---- 209
+L +++N N G IP+ I+ N I+ Y++I
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF--------------IAGKRYVYIKNDGM 583
Query: 210 RNIYHGS--LPLDIGVNLPNL-RFFIISGNNLT-----GSLQDSLSNATNLQKLDINRNL 261
+ HG+ L G+ L R + N+T G + N ++ LD++ N+
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 262 FSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLP 321
SG + G + L LNLG N++ +++ + L +L L SN+ +P
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG------DLRGLNILDLSSNKLDGRIP 697
Query: 322 FSLANLSTTMTGIAFGNNQISGFIPD 347
+++ L T +T I NN +SG IP+
Sbjct: 698 QAMSAL-TMLTEIDLSNNNLSGPIPE 722
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 154/340 (45%), Gaps = 49/340 (14%)
Query: 233 ISGNNLTGSLQD--SLSNATNLQKLDINRNL--FSGKVSINFGGLQ--NLSWLNLGKNNL 286
+S N+L+G + SL + + L+ L+++ N F GKVS GGL+ +L L+L N++
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS---GGLKLNSLEVLDLSANSI 163
Query: 287 -----------------------GTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS 323
G + + D+D ++ C LE L + SN F +PF
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF- 218
Query: 324 LANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI----LKSLQMLFLH 379
L + S + + N++SG I+ L L + NQ I LKSLQ L L
Sbjct: 219 LGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277
Query: 380 ENVLQGTIPSFL-GNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQ 438
EN G IP FL G LT L N G +PP G+C L L N SG +P
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 439 LPRIITXXXXXXXXXXXXXGHFPAEVGKLK-NLVSLDISSNMFSGEIPTTLGCT----SL 493
+ G P + L +L++LD+SSN FSG I L C +L
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL-CQNPKNTL 396
Query: 494 EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 533
+ L +Q+N FTG IP TLS+ + L LS N LSG IP
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 61 RSINLANNSFRAEIPHEVGNLFRLQNL--------------TLTNNYFSGKIPTNLSRCS 106
R + + N+ + E H GNL Q + +T+ + G
Sbjct: 574 RYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 107 NLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRL 166
+++ + S N L+G P EIG++ +LN+ N + G +P +G+L L ++++ N+L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 167 GGRIPSTRSHVRNLISFNVGLNQFSGMFPPI 197
GRIP S + L ++ N SG P +
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 35/249 (14%)
Query: 123 PAEIGNLLKFQLLNIAE-NHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLI 181
P+ + NL L I N+L G +P +I L+ L + + + G IP S ++ L+
Sbjct: 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128
Query: 182 SFNVGLNQFSGMFPP-INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTG 240
+ + N SG PP I+++ +L I N G++P G IS N LTG
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 241 SLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLL 300
+ + +N NL +D++RN+ G S+ FG +N ++L KN+L
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA------------- 234
Query: 301 TNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGV 360
D + G LS + G+ NN+I G +P G+ L L++L V
Sbjct: 235 ----------FDLGKVG---------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 361 EFNQLAVTI 369
FN L I
Sbjct: 276 SFNNLCGEI 284
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 125/297 (42%), Gaps = 41/297 (13%)
Query: 1 MKSQLQDPLGVTSSWNNSINLC--QWTGVTCGHRHQ--RVIGLDLRHQSIGGFLSPF--- 53
+K L +P + SSW + + C W GV C Q RV LDL ++ P+
Sbjct: 14 IKKDLGNPTTL-SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP---KPYPIP 69
Query: 54 --VGNLSFLRSINLAN-NSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVK 110
+ NL +L + + N+ IP + L +L L +T+ SG IP LS+ LV
Sbjct: 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129
Query: 111 FEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRI 170
L+ + N L G LP SI +L L I +GNR+ G I
Sbjct: 130 ------------------------LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 171 PSTRSHVRNLI-SFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLR 229
P + L S + N+ +G PP +L ++ + RN+ G + G + N +
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD-KNTQ 224
Query: 230 FFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNL 286
++ N+L L + + NL LD+ N G + L+ L LN+ NNL
Sbjct: 225 KIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 87/220 (39%), Gaps = 32/220 (14%)
Query: 345 IPDGIANLVNLNALGVE-FNQL------AVTILKSLQMLFLHENVLQGTIPSFLGNLTML 397
IP +ANL LN L + N L A+ L L L++ + G IP FL + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 398 TQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXX 457
N L G +PPSI + NL+ +T N+ SG +P
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 458 GHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTS------------------------L 493
G P L NL +D+S NM G+ G L
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 494 EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 533
L +++N G++P L+ LK + L++S NNL G IPQ
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 25/162 (15%)
Query: 34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRL-QNLTLTNN 92
+ ++ LD + ++ G L P + +L L I N IP G+ +L ++T++ N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 93 YFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIG------------NLLKFQL------ 134
+GKIP + NL + S N L G++ G N L F L
Sbjct: 185 RLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 135 -----LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIP 171
L++ N + G LP + L L +NV+ N L G IP
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 38 GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNN 92
GLDLR+ I G L + L FL S+N++ N+ EIP + GNL R NN
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 147/329 (44%), Gaps = 41/329 (12%)
Query: 54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
V L+ L IN +NN P + NL +L ++ + NN + P L+ +NL
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST 173
NN++ P + NL L ++ N + +++ L++LQ++N + N++ P
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP-- 168
Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
+++ L ++ N+ S + + +++LE + N PL I L NL +
Sbjct: 169 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSL 224
Query: 234 SGNNLTGSLQD--SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN------ 285
+GN L+D +L++ TNL LD+ N S + GL L+ L LG N
Sbjct: 225 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Query: 286 LGTRTA--------NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337
L TA N L+ I+ ++N L L L N + P S T + + F
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFY 335
Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLA 366
NN++S +ANL N+N L NQ++
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQIS 362
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 30/278 (10%)
Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
+N + N L P + NL+ L +I +N N++ P +++ NL + NQ + +
Sbjct: 68 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 122
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
P+ N+++L + + N L +L L F S N +T L+N T L++
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF---SSNQVTD--LKPLANLTTLER 177
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
LDI+ N S +S+ L NL L T N + IT L T L+ L L+ N
Sbjct: 178 LDISSNKVS-DISV-LAKLTNLESL--------IATNNQISDITPLGILTNLDELSLNGN 227
Query: 315 RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA----VTIL 370
+ + +LA+L T +T + NNQIS P ++ L L L + NQ++ + L
Sbjct: 228 QLKDI--GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 282
Query: 371 KSLQMLFLHENVLQGTIP-SFLGNLTMLTQRLLEVNDL 407
+L L L+EN L+ P S L NLT LT ++D+
Sbjct: 283 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 320
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 119/253 (47%), Gaps = 29/253 (11%)
Query: 57 LSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 116
L+ L+ +N ++N P + NL L+ L +++N S + L++ +NL A+NN
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 117 KLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQ---EINVNGNRLGGRIPST 173
+++ +P I L N+ E L G IG L++L ++++ N++ P
Sbjct: 206 QISDITPLGI-------LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-- 256
Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
S + L +G NQ S + P+ +++L + ++ N P+ NL NL + +
Sbjct: 257 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISPIS---NLKNLTYLTL 312
Query: 234 SGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTAND 293
NN++ +S+ T LQ+L N S S+ L N++WL+ G N + D
Sbjct: 313 YFNNISDI--SPVSSLTKLQRLFFYNNKVSDVSSL--ANLTNINWLSAGHNQIS-----D 363
Query: 294 LDFITLLTNCTKL 306
L + LT T+L
Sbjct: 364 LTPLANLTRITQL 376
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 102/246 (41%), Gaps = 67/246 (27%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
N L IT L N TKL +++++N+ + P LANL T +TG+ NNQI+ P + N
Sbjct: 73 NQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKN 127
Query: 352 LVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
L NLN L + N + A++ L SLQ L N +V DL
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLNFSSN---------------------QVTDL 166
Query: 408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKL 467
+ N L L NK S + + KL
Sbjct: 167 -----KPLANLTTLERLDISSNKVSDI---------------------------SVLAKL 194
Query: 468 KNLVSLDISSNMFSGEIPTTLGC-TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNN 526
NL SL ++N S P LG T+L+ L + N TL+SL ++T+LDL+ N
Sbjct: 195 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 250
Query: 527 LSGHIP 532
+S P
Sbjct: 251 ISNLAP 256
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 147/329 (44%), Gaps = 41/329 (12%)
Query: 54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
V L+ L IN +NN P + NL +L ++ + NN + P L+ +NL
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST 173
NN++ P + NL L ++ N + +++ L++LQ+++ + N++ P
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP-- 168
Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
+++ L ++ N+ S + + +++LE + N PL I L NL +
Sbjct: 169 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSL 224
Query: 234 SGNNLTGSLQD--SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN------ 285
+GN L+D +L++ TNL LD+ N S + GL L+ L LG N
Sbjct: 225 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Query: 286 LGTRTA--------NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337
L TA N L+ I+ ++N L L L N + P S T + + F
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFS 335
Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLA 366
NN++S +ANL N+N L NQ++
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQIS 362
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 30/278 (10%)
Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
+N + N L P + NL+ L +I +N N++ P +++ NL + NQ + +
Sbjct: 68 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 122
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
P+ N+++L + + N L +L L F S N +T L+N T L++
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF---SSNQVTD--LKPLANLTTLER 177
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
LDI+ N S +S+ L NL L T N + IT L T L+ L L+ N
Sbjct: 178 LDISSNKVS-DISV-LAKLTNLESL--------IATNNQISDITPLGILTNLDELSLNGN 227
Query: 315 RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA----VTIL 370
+ + +LA+L T +T + NNQIS P ++ L L L + NQ++ + L
Sbjct: 228 QLKDI--GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 282
Query: 371 KSLQMLFLHENVLQGTIP-SFLGNLTMLTQRLLEVNDL 407
+L L L+EN L+ P S L NLT LT ++D+
Sbjct: 283 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 320
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 120/253 (47%), Gaps = 29/253 (11%)
Query: 57 LSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 116
L+ L+ ++ ++N P + NL L+ L +++N S + L++ +NL A+NN
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 117 KLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQ---EINVNGNRLGGRIPST 173
+++ +P I L N+ E L G IG L++L ++++ N++ P
Sbjct: 206 QISDITPLGI-------LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-- 256
Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
S + L +G NQ S + P+ +++L + ++ N P+ NL NL + +
Sbjct: 257 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISPIS---NLKNLTYLTL 312
Query: 234 SGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTAND 293
NN++ +S+ T LQ+L + N S S+ L N++WL+ G N + D
Sbjct: 313 YFNNISDI--SPVSSLTKLQRLFFSNNKVSDVSSL--ANLTNINWLSAGHNQIS-----D 363
Query: 294 LDFITLLTNCTKL 306
L + LT T+L
Sbjct: 364 LTPLANLTRITQL 376
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 102/246 (41%), Gaps = 67/246 (27%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
N L IT L N TKL +++++N+ + P LANL T +TG+ NNQI+ P + N
Sbjct: 73 NQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKN 127
Query: 352 LVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
L NLN L + N + A++ L SLQ L N +V DL
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLSFSSN---------------------QVTDL 166
Query: 408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKL 467
+ N L L NK S + + KL
Sbjct: 167 -----KPLANLTTLERLDISSNKVSDI---------------------------SVLAKL 194
Query: 468 KNLVSLDISSNMFSGEIPTTLGC-TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNN 526
NL SL ++N S P LG T+L+ L + N TL+SL ++T+LDL+ N
Sbjct: 195 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 250
Query: 527 LSGHIP 532
+S P
Sbjct: 251 ISNLAP 256
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 147/329 (44%), Gaps = 42/329 (12%)
Query: 54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
V L+ L IN +NN P + NL +L ++ + NN + P L+ +NL
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST 173
NN++ P + NL L ++ N + +++ L++LQ++N GN++ P
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVTDLKP-- 167
Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
+++ L ++ N+ S + + +++LE + N PL I L NL +
Sbjct: 168 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSL 223
Query: 234 SGNNLTGSLQD--SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN------ 285
+GN L+D +L++ TNL LD+ N S + GL L+ L LG N
Sbjct: 224 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 277
Query: 286 LGTRTA--------NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337
L TA N L+ I+ ++N L L L N + P S T + + F
Sbjct: 278 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFS 334
Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLA 366
NN++S +ANL N+N L NQ++
Sbjct: 335 NNKVSDV--SSLANLTNINWLSAGHNQIS 361
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 31/278 (11%)
Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
+N + N L P + NL+ L +I +N N++ P +++ NL + NQ + +
Sbjct: 68 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 122
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
P+ N+++L + + N L +L L F GN +T L+N T L++
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF----GNQVTD--LKPLANLTTLER 176
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
LDI+ N S +S+ L NL L T N + IT L T L+ L L+ N
Sbjct: 177 LDISSNKVS-DISV-LAKLTNLESL--------IATNNQISDITPLGILTNLDELSLNGN 226
Query: 315 RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA----VTIL 370
+ + +LA+L T +T + NNQIS P ++ L L L + NQ++ + L
Sbjct: 227 QLKDI--GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 281
Query: 371 KSLQMLFLHENVLQGTIP-SFLGNLTMLTQRLLEVNDL 407
+L L L+EN L+ P S L NLT LT ++D+
Sbjct: 282 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 319
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 27/232 (11%)
Query: 78 VGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI 137
+ NL L+ L +++N S + L++ +NL A+NN+++ +P I L N+
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI-------LTNL 218
Query: 138 AENHLRGQLPASIGNLSALQ---EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
E L G IG L++L ++++ N++ P S + L +G NQ S +
Sbjct: 219 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI- 275
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
P+ +++L + ++ N P+ NL NL + + NN++ +S+ T LQ+
Sbjct: 276 SPLAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDI--SPVSSLTKLQR 330
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKL 306
L + N S S+ L N++WL+ G N + DL + LT T+L
Sbjct: 331 LFFSNNKVSDVSSL--ANLTNINWLSAGHNQIS-----DLTPLANLTRITQL 375
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 102/242 (42%), Gaps = 60/242 (24%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
N L IT L N TKL +++++N+ + P LANL T +TG+ NNQI+ P + N
Sbjct: 73 NQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKN 127
Query: 352 LVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNI 411
L NLN L + N ++ S L LT L Q L + + ++
Sbjct: 128 LTNLNRLELSSNTISDI--------------------SALSGLTSLQQ--LNFGNQVTDL 165
Query: 412 PPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLV 471
P + N L L NK S + + KL NL
Sbjct: 166 KP-LANLTTLERLDISSNKVSDI---------------------------SVLAKLTNLE 197
Query: 472 SLDISSNMFSGEIPTTLGC-TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 530
SL ++N S P LG T+L+ L + N TL+SL ++T+LDL+ N +S
Sbjct: 198 SLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL 253
Query: 531 IP 532
P
Sbjct: 254 AP 255
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 147/329 (44%), Gaps = 41/329 (12%)
Query: 54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
V L+ L IN +NN P + NL +L ++ + NN + P L+ +NL
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST 173
NN++ P + NL L ++ N + +++ L++LQ+++ + N++ P
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP-- 168
Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
+++ L ++ N+ S + + +++LE + N PL I L NL +
Sbjct: 169 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSL 224
Query: 234 SGNNLTGSLQD--SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN------ 285
+GN L+D +L++ TNL LD+ N S + GL L+ L LG N
Sbjct: 225 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Query: 286 LGTRTA--------NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337
L TA N L+ I+ ++N L L L N + P S T + + F
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFY 335
Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLA 366
NN++S +ANL N+N L NQ++
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQIS 362
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 30/278 (10%)
Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
+N + N L P + NL+ L +I +N N++ P +++ NL + NQ + +
Sbjct: 68 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 122
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
P+ N+++L + + N L +L L F S N +T L+N T L++
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF---SSNQVTD--LKPLANLTTLER 177
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
LDI+ N S +S+ L NL L T N + IT L T L+ L L+ N
Sbjct: 178 LDISSNKVS-DISV-LAKLTNLESL--------IATNNQISDITPLGILTNLDELSLNGN 227
Query: 315 RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA----VTIL 370
+ + +LA+L T +T + NNQIS P ++ L L L + NQ++ + L
Sbjct: 228 QLKDI--GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 282
Query: 371 KSLQMLFLHENVLQGTIP-SFLGNLTMLTQRLLEVNDL 407
+L L L+EN L+ P S L NLT LT ++D+
Sbjct: 283 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 320
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 102/246 (41%), Gaps = 67/246 (27%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
N L IT L N TKL +++++N+ + P LANL T +TG+ NNQI+ P + N
Sbjct: 73 NQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKN 127
Query: 352 LVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
L NLN L + N + A++ L SLQ L N +V DL
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLSFSSN---------------------QVTDL 166
Query: 408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKL 467
+ N L L NK S + + KL
Sbjct: 167 -----KPLANLTTLERLDISSNKVSDI---------------------------SVLAKL 194
Query: 468 KNLVSLDISSNMFSGEIPTTLGC-TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNN 526
NL SL ++N S P LG T+L+ L + N TL+SL ++T+LDL+ N
Sbjct: 195 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 250
Query: 527 LSGHIP 532
+S P
Sbjct: 251 ISNLAP 256
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 119/253 (47%), Gaps = 29/253 (11%)
Query: 57 LSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 116
L+ L+ ++ ++N P + NL L+ L +++N S + L++ +NL A+NN
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 117 KLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQ---EINVNGNRLGGRIPST 173
+++ +P I L N+ E L G IG L++L ++++ N++ P
Sbjct: 206 QISDITPLGI-------LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-- 256
Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
S + L +G NQ S + P+ +++L + ++ N P+ NL NL + +
Sbjct: 257 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISPIS---NLKNLTYLTL 312
Query: 234 SGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTAND 293
NN++ +S+ T LQ+L N S S+ L N++WL+ G N + D
Sbjct: 313 YFNNISDI--SPVSSLTKLQRLFFYNNKVSDVSSL--ANLTNINWLSAGHNQIS-----D 363
Query: 294 LDFITLLTNCTKL 306
L + LT T+L
Sbjct: 364 LTPLANLTRITQL 376
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 147/329 (44%), Gaps = 42/329 (12%)
Query: 54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
V L+ L IN +NN P + NL +L ++ + NN + P L+ +NL
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST 173
NN++ P + NL L ++ N + +++ L++LQ++N GN++ P
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVTDLKP-- 167
Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
+++ L ++ N+ S + + +++LE + N PL I L NL +
Sbjct: 168 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSL 223
Query: 234 SGNNLTGSLQD--SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN------ 285
+GN L+D +L++ TNL LD+ N S + GL L+ L LG N
Sbjct: 224 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 277
Query: 286 LGTRTA--------NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337
L TA N L+ I+ ++N L L L N + P S T + + F
Sbjct: 278 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFY 334
Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLA 366
NN++S +ANL N+N L NQ++
Sbjct: 335 NNKVSDV--SSLANLTNINWLSAGHNQIS 361
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 31/278 (11%)
Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
+N + N L P + NL+ L +I +N N++ P +++ NL + NQ + +
Sbjct: 68 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 122
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
P+ N+++L + + N L +L L F GN +T L+N T L++
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF----GNQVTD--LKPLANLTTLER 176
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
LDI+ N S +S+ L NL L T N + IT L T L+ L L+ N
Sbjct: 177 LDISSNKVS-DISV-LAKLTNLESL--------IATNNQISDITPLGILTNLDELSLNGN 226
Query: 315 RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA----VTIL 370
+ + +LA+L T +T + NNQIS P ++ L L L + NQ++ + L
Sbjct: 227 QLKDI--GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 281
Query: 371 KSLQMLFLHENVLQGTIP-SFLGNLTMLTQRLLEVNDL 407
+L L L+EN L+ P S L NLT LT ++D+
Sbjct: 282 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 319
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 27/232 (11%)
Query: 78 VGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI 137
+ NL L+ L +++N S + L++ +NL A+NN+++ +P I L N+
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI-------LTNL 218
Query: 138 AENHLRGQLPASIGNLSALQ---EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
E L G IG L++L ++++ N++ P S + L +G NQ S +
Sbjct: 219 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI- 275
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
P+ +++L + ++ N P+ NL NL + + NN++ +S+ T LQ+
Sbjct: 276 SPLAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDI--SPVSSLTKLQR 330
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKL 306
L N S S+ L N++WL+ G N + DL + LT T+L
Sbjct: 331 LFFYNNKVSDVSSL--ANLTNINWLSAGHNQIS-----DLTPLANLTRITQL 375
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 102/242 (42%), Gaps = 60/242 (24%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
N L IT L N TKL +++++N+ + P LANL T +TG+ NNQI+ P + N
Sbjct: 73 NQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKN 127
Query: 352 LVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNI 411
L NLN L + N ++ S L LT L Q L + + ++
Sbjct: 128 LTNLNRLELSSNTISDI--------------------SALSGLTSLQQ--LNFGNQVTDL 165
Query: 412 PPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLV 471
P + N L L NK S + + KL NL
Sbjct: 166 KP-LANLTTLERLDISSNKVSDI---------------------------SVLAKLTNLE 197
Query: 472 SLDISSNMFSGEIPTTLGC-TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 530
SL ++N S P LG T+L+ L + N TL+SL ++T+LDL+ N +S
Sbjct: 198 SLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL 253
Query: 531 IP 532
P
Sbjct: 254 AP 255
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 31/278 (11%)
Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
+N + N L P + NL+ L +I +N N++ P +++ NL + NQ + +
Sbjct: 72 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 126
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
P+ N+++L + + N L +L L F GN +T L+N T L++
Sbjct: 127 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF----GNQVTD--LKPLANLTTLER 180
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
LDI+ N S +S+ L NL L T N + IT L T L+ L L+ N
Sbjct: 181 LDISSNKVS-DISV-LAKLTNLESL--------IATNNQISDITPLGILTNLDELSLNGN 230
Query: 315 RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA----VTIL 370
+ + +LA+L T +T + NNQIS P ++ L L L + NQ++ + L
Sbjct: 231 QLKDI--GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 285
Query: 371 KSLQMLFLHENVLQGTIP-SFLGNLTMLTQRLLEVNDL 407
+L L L+EN L+ P S L NLT LT ++D+
Sbjct: 286 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 323
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 105/246 (42%), Gaps = 68/246 (27%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
N L IT L N TKL +++++N+ + P LANL T +TG+ NNQI+ P + N
Sbjct: 77 NQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKN 131
Query: 352 LVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
L NLN L + N + A++ L SLQ L SF GN +V DL
Sbjct: 132 LTNLNRLELSSNTISDISALSGLTSLQQL------------SF-GN---------QVTDL 169
Query: 408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKL 467
+ N L L NK S + + KL
Sbjct: 170 -----KPLANLTTLERLDISSNKVSDI---------------------------SVLAKL 197
Query: 468 KNLVSLDISSNMFSGEIPTTLGC-TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNN 526
NL SL ++N S P LG T+L+ L + N TL+SL ++T+LDL+ N
Sbjct: 198 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 253
Query: 527 LSGHIP 532
+S P
Sbjct: 254 ISNLAP 259
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 31/278 (11%)
Query: 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
+N + N L P + NL+ L +I +N N++ P +++ NL + NQ + +
Sbjct: 73 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI- 127
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
P+ N+++L + + N L +L L F GN +T L+N T L++
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF----GNQVTD--LKPLANLTTLER 181
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN 314
LDI+ N S +S+ L NL L T N + IT L T L+ L L+ N
Sbjct: 182 LDISSNKVS-DISV-LAKLTNLESL--------IATNNQISDITPLGILTNLDELSLNGN 231
Query: 315 RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA----VTIL 370
+ + +LA+L T +T + NNQIS P ++ L L L + NQ++ + L
Sbjct: 232 QLKDI--GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 286
Query: 371 KSLQMLFLHENVLQGTIP-SFLGNLTMLTQRLLEVNDL 407
+L L L+EN L+ P S L NLT LT ++D+
Sbjct: 287 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 324
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 147/329 (44%), Gaps = 42/329 (12%)
Query: 54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113
V L+ L IN +NN P + NL +L ++ + NN + P L+ +NL
Sbjct: 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119
Query: 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST 173
NN++ P + NL L ++ N + +++ L++LQ+++ GN++ P
Sbjct: 120 FNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP-- 172
Query: 174 RSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233
+++ L ++ N+ S + + +++LE + N PL I L NL +
Sbjct: 173 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSL 228
Query: 234 SGNNLTGSLQD--SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN------ 285
+GN L+D +L++ TNL LD+ N S + GL L+ L LG N
Sbjct: 229 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 282
Query: 286 LGTRTA--------NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337
L TA N L+ I+ ++N L L L N + P S T + + F
Sbjct: 283 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFY 339
Query: 338 NNQISGFIPDGIANLVNLNALGVEFNQLA 366
NN++S +ANL N+N L NQ++
Sbjct: 340 NNKVSDV--SSLANLTNINWLSAGHNQIS 366
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 27/232 (11%)
Query: 78 VGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI 137
+ NL L+ L +++N S + L++ +NL A+NN+++ +P I L N+
Sbjct: 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI-------LTNL 223
Query: 138 AENHLRGQLPASIGNLSALQ---EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194
E L G IG L++L ++++ N++ P S + L +G NQ S +
Sbjct: 224 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI- 280
Query: 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQK 254
P+ +++L + ++ N P+ NL NL + + NN++ +S+ T LQ+
Sbjct: 281 SPLAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDI--SPVSSLTKLQR 335
Query: 255 LDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKL 306
L N S S+ L N++WL+ G N + DL + LT T+L
Sbjct: 336 LFFYNNKVSDVSSL--ANLTNINWLSAGHNQIS-----DLTPLANLTRITQL 380
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 105/246 (42%), Gaps = 68/246 (27%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
N L IT L N TKL +++++N+ + P LANL T +TG+ NNQI+ P + N
Sbjct: 78 NQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKN 132
Query: 352 LVNLNALGVEFNQL----AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
L NLN L + N + A++ L SLQ L SF GN +V DL
Sbjct: 133 LTNLNRLELSSNTISDISALSGLTSLQQL------------SF-GN---------QVTDL 170
Query: 408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKL 467
+ N L L NK S + + KL
Sbjct: 171 -----KPLANLTTLERLDISSNKVSDI---------------------------SVLAKL 198
Query: 468 KNLVSLDISSNMFSGEIPTTLGC-TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNN 526
NL SL ++N S P LG T+L+ L + N TL+SL ++T+LDL+ N
Sbjct: 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 254
Query: 527 LSGHIP 532
+S P
Sbjct: 255 ISNLAP 260
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 25/194 (12%)
Query: 225 LPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKN 284
L NL + I++GN L TNL++L + N F L NL++LNL N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 285 NLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGF 344
L + D LTN T+L+ L N+ + LP + + T + + NQ+
Sbjct: 144 QLQSLPKGVFD---KLTNLTELD---LSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKS- 195
Query: 345 IPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEV 404
+PDG+ F++L SLQ ++LH+N T P + + V
Sbjct: 196 VPDGV------------FDRLT-----SLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVV 238
Query: 405 NDLLGNIPPSIGNC 418
+ G++ P C
Sbjct: 239 RNSAGSVAPDSAKC 252
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 10/150 (6%)
Query: 76 HEVGNLFRLQNLT---LTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKF 132
H++ L L NLT LT N + +NL + N+L L
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 133 QLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF-- 190
LN+A N L+ L+ L E++++ N+L + L + NQ
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 191 --SGMFPPINNISSLEYIFIHRNIYHGSLP 218
G+F + ++SL+YI++H N + + P
Sbjct: 196 VPDGVF---DRLTSLQYIWLHDNPWDCTCP 222
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 251 NLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLV 310
+ +KLD+ + F GL L+WLNL N L T +A D + T+L L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL------TELGTLG 89
Query: 311 LDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN-LVNLNALGVEFNQL---- 365
L +N+ A LP + + T + + G NQ+ +P G+ + L L L + NQL
Sbjct: 90 LANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 366 --AVTILKSLQMLFLHENVLQGTIP----SFLGNLTMLT 398
A L +LQ L L N LQ ++P LG L +T
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTIT 185
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 17/168 (10%)
Query: 157 QEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF----SGMFPPINNISSLEYIFIHRNI 212
+++++ L +T + L N+ NQ +G+F + + +L N
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA----NN 93
Query: 213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGG 272
SLPL + +L L + GN L T L++L +N N + F
Sbjct: 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153
Query: 273 LQNLSWLNLGKNNLGTRTANDLD------FITLLTN---CTKLEVLVL 311
L NL L+L N L + D ITL N C++ E+L L
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYL 201
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 251 NLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLV 310
+ +KLD+ + F GL L+WLNL N L T +A D + T+L L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL------TELGTLG 89
Query: 311 LDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN-LVNLNALGVEFNQL---- 365
L +N+ A LP + + T + + G NQ+ +P G+ + L L L + NQL
Sbjct: 90 LANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 366 --AVTILKSLQMLFLHENVLQGTIP----SFLGNLTMLT 398
A L +LQ L L N LQ ++P LG L +T
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTIT 185
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 6/189 (3%)
Query: 98 IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASI-GNLSAL 156
IP+N+ ++ K + +NKL+ L K +LL + +N L+ LPA I L L
Sbjct: 31 IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87
Query: 157 QEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPI-NNISSLEYIFIHRNIYHG 215
+ + V N+L + NL + NQ + P + ++++ L Y+ + N
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ- 146
Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275
SLP + L +L+ + N L + + T L+ L ++ N F L+
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206
Query: 276 LSWLNLGKN 284
L L L +N
Sbjct: 207 LKMLQLQEN 215
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 67/178 (37%), Gaps = 13/178 (7%)
Query: 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275
SLP L LR ++ N L NL+ L + N F L N
Sbjct: 51 SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110
Query: 276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIA 335
L+ L L +N L + D + TKL L L N + LP + + T++ +
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSL------TKLTYLSLGYNELQS-LPKGVFDKLTSLKELR 163
Query: 336 FGNNQISGFIPDGIANLVNLNALGVEFNQL------AVTILKSLQMLFLHENVLQGTI 387
NNQ+ L L L ++ NQL A L+ L+ML L EN T
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 225 LPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKN 284
L NL + I++GN L TNL++L + N F L NL++L L N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 285 NLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGF 344
L + D LTN T+L+ LD+N+ + LP + + T + ++ +NQ+
Sbjct: 144 QLQSLPKGVFD---KLTNLTRLD---LDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKS- 195
Query: 345 IPDGI 349
+PDG+
Sbjct: 196 VPDGV 200
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 225 LPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKN 284
LPN+R+ + GN L +L TNL L + N + F L NL L L +N
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 285 NLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGF 344
L + D +T LT L L N+ + LP + + T +T + NNQ+
Sbjct: 120 QLQSLPDGVFDKLTNLT------YLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQS- 171
Query: 345 IPDGIAN-LVNLNALGVEFNQL 365
+P+G+ + L L L + NQL
Sbjct: 172 LPEGVFDKLTQLKQLSLNDNQL 193
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 192 GMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATN 251
G+F + N+ E + + + SLP + L NL + + N L + TN
Sbjct: 103 GVFDKLTNLK--ELVLVENQL--QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTN 158
Query: 252 LQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTN 302
L +LD++ N F L L L+L N L + D +T LT+
Sbjct: 159 LTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTH 209
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 55 GNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 114
N S L+ ++L+ L L NL LT N P + S ++L A
Sbjct: 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112
Query: 115 NNKLAGESPAEIGNLLKFQLLNIAENHLRG-QLPASIGNLSALQEINVNGNRL 166
KLA IG L+ + LN+A N + +LPA NL+ L ++++ N +
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 55 GNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 114
N S L+ ++L+ L L NL LT N P + S ++L A
Sbjct: 48 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 107
Query: 115 NNKLAGESPAEIGNLLKFQLLNIAENHLRG-QLPASIGNLSALQEINVNGNRL 166
KLA IG L+ + LN+A N + +LPA NL+ L ++++ N +
Sbjct: 108 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 160
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 25/156 (16%)
Query: 233 ISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTAN 292
+S + + L+ S+ T+L++L + +N + F GL +L LNL +N LG+ +
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341
Query: 293 DLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANL 352
+ N KLEVL L N A+ S L + +A NQ+ +PDGI
Sbjct: 342 ------MFENLDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQLKS-VPDGI--- 390
Query: 353 VNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIP 388
F++L SLQ ++LH N + P
Sbjct: 391 ---------FDRLT-----SLQKIWLHTNPWDCSCP 412
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 23/159 (14%)
Query: 60 LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
+++ +L+ + A + + L+ LTL N + ++L+K S N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRN 179
NL K ++L+++ NH+R S L L+E+ ++ N+L +P
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VP-------- 387
Query: 180 LISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLP 218
G+F + ++SL+ I++H N + S P
Sbjct: 388 -----------DGIF---DRLTSLQKIWLHTNPWDCSCP 412
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 19/99 (19%)
Query: 309 LVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT 368
L L+SN+ + LP + + T +T ++ NQI +PDG+ F++L
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQS-LPDGV------------FDKLT-- 76
Query: 369 ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
L +L+LHEN LQ LT L + L+ N L
Sbjct: 77 ---KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 73 EIPHEVGNLFRLQNLTLTNNYFSGKIPTN--LSRCSNLVKFEASNNKLAGESPAEIGNLL 130
EIP ++ L L +N G+I ++ R +LVK E N+L G P
Sbjct: 22 EIPRDIP--LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78
Query: 131 KFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF 190
Q L + EN ++ L L+ +N+ N++ +P + H+ +L S N+ N F
Sbjct: 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 225 LPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKN 284
LP+L + N LTG ++ A+++Q+L + N + F GL L LNL N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 285 NLGTRTANDLDFITLLTN 302
+ + + LT+
Sbjct: 113 QISCVMPGSFEHLNSLTS 130
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 81/206 (39%), Gaps = 27/206 (13%)
Query: 85 QNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAEN-HLR 143
Q + L N S + C NL +N LA A L + L++++N LR
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 144 GQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFS-GMFPPINNISS 202
PA+ L L ++++ GL + G+F +++
Sbjct: 94 SVDPATFHGLGRLHTLHLD---------------------RCGLQELGPGLF---RGLAA 129
Query: 203 LEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLF 262
L+Y+++ N +LP D +L NL + GN ++ + + +L +L +++N
Sbjct: 130 LQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 188
Query: 263 SGKVSINFGGLQNLSWLNLGKNNLGT 288
+ F L L L L NNL
Sbjct: 189 AHVHPHAFRDLGRLMTLYLFANNLSA 214
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 13/193 (6%)
Query: 221 IGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLN 280
+G+ + R F+ GN ++ S NL L ++ N+ + + F GL L L+
Sbjct: 27 VGIPAASQRIFL-HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 85
Query: 281 LGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQ 340
L +N R+ + F L +L L LD + P L+ + + +N
Sbjct: 86 L-SDNAQLRSVDPATFHGL----GRLHTLHLDRCGLQELGPGLFRGLAA-LQYLYLQDNA 139
Query: 341 ISGFIPDGIANLVNLNALGVEFNQL------AVTILKSLQMLFLHENVLQGTIPSFLGNL 394
+ D +L NL L + N++ A L SL L LH+N + P +L
Sbjct: 140 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 199
Query: 395 TMLTQRLLEVNDL 407
L L N+L
Sbjct: 200 GRLMTLYLFANNL 212
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 81/206 (39%), Gaps = 27/206 (13%)
Query: 85 QNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAEN-HLR 143
Q + L N S + C NL +N LA A L + L++++N LR
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 144 GQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFS-GMFPPINNISS 202
PA+ L L ++++ GL + G+F +++
Sbjct: 95 SVDPATFHGLGRLHTLHLD---------------------RCGLQELGPGLF---RGLAA 130
Query: 203 LEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLF 262
L+Y+++ N +LP D +L NL + GN ++ + + +L +L +++N
Sbjct: 131 LQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 263 SGKVSINFGGLQNLSWLNLGKNNLGT 288
+ F L L L L NNL
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSA 215
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 13/193 (6%)
Query: 221 IGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLN 280
+G+ + R F+ GN ++ S NL L ++ N+ + + F GL L L+
Sbjct: 28 VGIPAASQRIFL-HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86
Query: 281 LGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQ 340
L +N R+ + F L +L L LD + P L+ + + +N
Sbjct: 87 L-SDNAQLRSVDPATFHGL----GRLHTLHLDRCGLQELGPGLFRGLAA-LQYLYLQDNA 140
Query: 341 ISGFIPDGIANLVNLNALGVEFNQL------AVTILKSLQMLFLHENVLQGTIPSFLGNL 394
+ D +L NL L + N++ A L SL L LH+N + P +L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 395 TMLTQRLLEVNDL 407
L L N+L
Sbjct: 201 GRLMTLYLFANNL 213
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 227 NLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNL 286
NL+ +++ N + +DS S+ +L+ LD++ N S S F L +L++LNL N
Sbjct: 51 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 110
Query: 287 GTRTANDLDFITLLTNCTKLEVL-VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFI 345
T L +L ++ TKL++L V + + F + A L T + + + + +
Sbjct: 111 KT-----LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLEELEIDASDLQSYE 164
Query: 346 PDGIANLVNLNALGVEFNQ 364
P + ++ N++ L + Q
Sbjct: 165 PKSLKSIQNVSHLILHMKQ 183
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 17/78 (21%)
Query: 467 LKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQD---NSFTGSIPSTLSSLK-------- 515
LKNL ++DIS N F T ++YL + +S TG IP TL L
Sbjct: 386 LKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNL 445
Query: 516 ------SITELDLSRNNL 527
+ EL +SRN L
Sbjct: 446 FSLNLPQLKELYISRNKL 463
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 227 NLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNL 286
NL+ +++ N + +DS S+ +L+ LD++ N S S F L +L++LNL N
Sbjct: 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136
Query: 287 GTRTANDLDFITLLTNCTKLEVL-VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFI 345
T L +L ++ TKL++L V + + F + A L T + + + + +
Sbjct: 137 KT-----LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLEELEIDASDLQSYE 190
Query: 346 PDGIANLVNLNALGVEFNQ 364
P + ++ N++ L + Q
Sbjct: 191 PKSLKSIQNVSHLILHMKQ 209
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 16/206 (7%)
Query: 87 LTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQL 146
L L NN + + NL NNK++ SP L+K + L +++N L+ +L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 147 PASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFS------GMFPPINNI 200
P + LQE+ V+ N + S + + +I +G N G F + +
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 201 SSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRN 260
S + + LP P+L + GN +T SL NL KL ++ N
Sbjct: 174 SYIRIADTNITTIPQGLP-------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 261 LFSGKVSINFGGLQNLSWLNLGKNNL 286
S + + +L L+L N L
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKL 252
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 308 VLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA- 366
+L L +N+ + NL T I NN+IS P A LV L L + NQL
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 367 --VTILKSLQMLFLHEN 381
+ K+LQ L +HEN
Sbjct: 115 LPEKMPKTLQELRVHEN 131
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 16/206 (7%)
Query: 87 LTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQL 146
L L NN + + NL NNK++ SP L+K + L +++N L+ +L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 147 PASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFS------GMFPPINNI 200
P + LQE+ V+ N + S + + +I +G N G F + +
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 201 SSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRN 260
S + + LP P+L + GN +T SL NL KL ++ N
Sbjct: 174 SYIRIADTNITTIPQGLP-------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 261 LFSGKVSINFGGLQNLSWLNLGKNNL 286
S + + +L L+L N L
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKL 252
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 308 VLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLA- 366
+L L +N+ + NL T I NN+IS P A LV L L + NQL
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 367 --VTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
+ K+LQ L +HEN + S L + L N L
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 20/227 (8%)
Query: 144 GQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL----ISFNVGLNQFSGMFPPINN 199
++PASI + +N+ N + T H+R+L +S N+ G F + +
Sbjct: 27 AEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 200 ISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINR 259
+++LE +F +R ++P L LR + N + + + +L++LD+
Sbjct: 85 LNTLE-LFDNRLT---TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 260 NLFSGKVS-INFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGA 318
+S F GL NL +LNLG NL I LT +LE L L NR
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNLKD--------IPNLTALVRLEELELSGNRLDL 192
Query: 319 VLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL 365
+ P S L T++ + + Q++ + +L +L L + N L
Sbjct: 193 IRPGSFQGL-TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 250 TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309
TN Q L ++ N + F L NL L LG N LG D +T LT VL
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT------VL 93
Query: 310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL 365
L +N+ VLP ++ + + + N+++ +P GI L +L L ++ NQL
Sbjct: 94 DLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 20/227 (8%)
Query: 144 GQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL----ISFNVGLNQFSGMFPPINN 199
++PASI + +N+ N + T H+R+L +S N+ G F + +
Sbjct: 27 AEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 200 ISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINR 259
+++LE +F +R ++P L LR + N + + + +L++LD+
Sbjct: 85 LNTLE-LFDNRLT---TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 260 NLFSGKVS-INFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGA 318
+S F GL NL +LNLG NL D+ +T L +LE L L NR
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNL-----KDIPNLTALV---RLEELELSGNRLDL 192
Query: 319 VLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL 365
+ P S L T++ + + Q++ + +L +L L + N L
Sbjct: 193 IRPGSFQGL-TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 115/299 (38%), Gaps = 25/299 (8%)
Query: 50 LSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLV 109
+ PF G LR + ++ +A +P E+ L L L NN S + +L
Sbjct: 26 MCPF-GCHCHLRVVQCSDLGLKA-VPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLY 81
Query: 110 KFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGR 169
NNK++ L K Q L I++NHL ++P ++ S+L E+ ++ NR+
Sbjct: 82 ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKV 138
Query: 170 IPSTRSHVRNLISFNVGLNQF--SGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPN 227
S +RN+ +G N SG P + L Y+ I G +P D+ L
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPETLNE 197
Query: 228 LRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLG 287
L + N + + L + L +L + N + + L L L+L N L
Sbjct: 198 LH---LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Query: 288 TRTANDLDFITLLTNCTKLEVLVLDSNRFGAV-----LPFSLANLSTTMTGIAFGNNQI 341
A L + L+V+ L +N V P GI+ NN +
Sbjct: 255 RVPAG-------LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 24/88 (27%)
Query: 131 KFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF 190
K ++L++ N + +P + +L ALQE+NV N+L +P
Sbjct: 451 KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VP------------------- 489
Query: 191 SGMFPPINNISSLEYIFIHRNIYHGSLP 218
G+F + ++SL+YI++H N + + P
Sbjct: 490 DGVF---DRLTSLQYIWLHDNPWDCTCP 514
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 77/201 (38%), Gaps = 25/201 (12%)
Query: 230 FFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSG--KVSINFGGLQNLSWLNLGKNNLG 287
F + N T S+ S LQ L + RN KV++ + +L L++ N+L
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 288 TRTANDLDFITLLTNCTKLE---VLVLDSNRF-GAVLPFSLANLSTTMTGIAFGNNQISG 343
+ + C E VL L SN G+V L + + NN+I
Sbjct: 417 SHAYD--------RTCAWAESILVLNLSSNMLTGSVF----RCLPPKVKVLDLHNNRIMS 464
Query: 344 FIPDGIANLVNLNALGVEFNQL------AVTILKSLQMLFLHENVLQGTIPSFLGNLTML 397
IP + +L L L V NQL L SLQ ++LH+N T P +
Sbjct: 465 -IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 523
Query: 398 TQRLLEVNDLLGNIPPSIGNC 418
+ V + G++ P C
Sbjct: 524 NKHSGVVRNSAGSVAPDSAKC 544
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 209 HRNIYHG---SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGK 265
H ++ HG SL + L +L+ ++ N + ++ NLQ L+++ NL
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
Query: 266 VSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAV 319
S NF GL +++++L KN++ F+ KL+ L L N +
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL------EKLQTLDLRDNALTTI 377
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 46/226 (20%)
Query: 106 SNLVKFEASNNKLAGESPA---EIGNLLKFQLLNIAEN-HLRGQLPASIGNLSALQEINV 161
S+L K + S+N L SP IG L L N N HL +L + N +++Q +++
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSL 229
Query: 162 NGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIF--IHRNIYHGSLPL 219
N+L ST FSG+ N++ L+ + +H ++ +GS
Sbjct: 230 ANNQLLATSEST----------------FSGL--KWTNLTQLDLSYNNLH-DVGNGSFSY 270
Query: 220 DIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSI---------NF 270
LP+LR+ + NN+ S +NL+ L + R VS+ +F
Sbjct: 271 -----LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSF 325
Query: 271 GGLQNLSWLNLGKNNLGTRTAN------DLDFITLLTNCTKLEVLV 310
L+ L +LN+ NN+ + +N L +++L T L+ L
Sbjct: 326 QWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLT 371
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 106 SNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNR 165
++L + NKL L LN++ N L+ L+ L+E+ +N N+
Sbjct: 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ 111
Query: 166 LGGRIPSTRSHVRNLISFNVGLNQF----SGMFPPINNISSLEYIFIHRNIYHGSLP 218
L + L + NQ G+F + ++SL+YI++H N + + P
Sbjct: 112 LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF---DRLTSLQYIWLHDNPWDCTCP 165
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 22/179 (12%)
Query: 264 GKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS 323
G+ S+ G ++L+L N+L + D +T LT L L N+ + LP
Sbjct: 18 GRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQ------LYLGGNKLQS-LPNG 70
Query: 324 LANLSTTMTGIAFGNNQISGFIPDGIAN-LVNLNALGVEFNQL------AVTILKSLQML 376
+ N T++T + NQ+ +P+G+ + L L L + NQL L L+ L
Sbjct: 71 VFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129
Query: 377 FLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTM 435
L++N L+ LT L L N P C + L+ NK SG +
Sbjct: 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDN-------PWDCTCPGIRYLSEWINKHSGVV 181
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 27/212 (12%)
Query: 85 QNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAEN-HLR 143
Q + L N S + C NL +N LAG A L + L++++N LR
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 144 GQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF-SGMFPPINNISS 202
P + L L ++++ GL + G+F +++
Sbjct: 94 VVDPTTFRGLGHLHTLHLD---------------------RCGLQELGPGLF---RGLAA 129
Query: 203 LEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLF 262
L+Y+++ N +LP + +L NL + GN + + + +L +L +++N
Sbjct: 130 LQYLYLQDNNLQ-ALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHV 188
Query: 263 SGKVSINFGGLQNLSWLNLGKNNLGTRTANDL 294
+ F L L L L NNL A L
Sbjct: 189 ARVHPHAFRDLGRLMTLYLFANNLSMLPAEVL 220
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 309 LVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT 368
L LD N+F ++P L+N +T I NN+IS +N+ L L + +N+L
Sbjct: 36 LYLDGNQF-TLVPKELSNYKH-LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 369 I------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNI 411
LKSL++L LH N + +L+ L+ + N L +
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 74 IPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ 133
+P E+ N L + L+NN S + S + L+ S N+L P L +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRL 166
LL++ N + + +LSAL + + N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 224 NLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGK 283
+L +L I++GN + + S ++LQKL + + G L+ L LN+
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 135
Query: 284 NNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQIS- 342
N + + +N T LE L L SN+ ++ L L + ++
Sbjct: 136 NLIQS-----FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 190
Query: 343 -GFIPDGIANLVNLNALGVEFNQLA------VTILKSLQMLFLHENVLQGTIP 388
FI G + L L ++ NQL L SLQ ++LH N + P
Sbjct: 191 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 80 NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAE 139
+L L L LT N S S+L K A LA IG+L + LN+A
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 135
Query: 140 NHLRG-QLPASIGNLSALQEINVNGNRL 166
N ++ +LP NL+ L+ ++++ N++
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 224 NLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGK 283
+L +L I++GN + + S ++LQKL + + G L+ L LN+
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 284 NNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQIS- 342
N + + +N T LE L L SN+ ++ L L + ++
Sbjct: 135 NLIQS-----FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 189
Query: 343 -GFIPDGIANLVNLNALGVEFNQLA------VTILKSLQMLFLHENVLQGTIP 388
FI G + L L ++ NQL L SLQ ++LH N + P
Sbjct: 190 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 80 NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAE 139
+L L L LT N S S+L K A LA IG+L + LN+A
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 140 NHLRG-QLPASIGNLSALQEINVNGNRL 166
N ++ +LP NL+ L+ ++++ N++
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 23/136 (16%)
Query: 36 VIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFS 95
+I LD+ H + LS L + +A NSF+ ++ L+NLT
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTF------ 474
Query: 96 GKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSA 155
+LS+C +L SP +L Q+LN+A N L+ L++
Sbjct: 475 ----LDLSQC-----------QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519
Query: 156 LQEINVNGNRLGGRIP 171
LQ+I ++ N P
Sbjct: 520 LQKIWLHTNPWDCSCP 535
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 80 NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAE 139
+L L L LT N S S+L K A LA IG+L + LN+A
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 140 NHLRG-QLPASIGNLSALQEINVNGNRL 166
N ++ +LP NL+ L+ ++++ N++
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 224 NLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGK 283
+L +L I++GN + + S ++LQKL + + G L+ L LN+
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 284 NNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQIS- 342
N + + +N T LE L L SN+ ++ L L + ++
Sbjct: 134 NLIQS-----FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188
Query: 343 -GFIPDGIANLVNLNALGVEFNQLA------VTILKSLQMLFLHENVLQGTIP 388
FI G + L L ++ NQL L SLQ ++LH N + P
Sbjct: 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 80 NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAE 139
+L L L LT N S S+L K A LA IG+L + LN+A
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 140 NHLRG-QLPASIGNLSALQEINVNGNRL 166
N ++ +LP NL+ L+ ++++ N++
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 224 NLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGK 283
+L +L I++GN + + S ++LQKL + + G L+ L LN+
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 284 NNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQIS- 342
N + + +N T LE L L SN+ ++ L L + ++
Sbjct: 135 NLIQS-----FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 189
Query: 343 -GFIPDGIANLVNLNALGVEFNQLA------VTILKSLQMLFLHENVLQGTIP 388
FI G + L L ++ NQL L SLQ ++LH N + P
Sbjct: 190 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 80 NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAE 139
+L L L LT N S S+L K A LA IG+L + LN+A
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 140 NHLRG-QLPASIGNLSALQEINVNGNRL 166
N ++ +LP NL+ L+ ++++ N++
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 33/169 (19%)
Query: 55 GNLSFLRSINLANNSFR--AEIPHEVGNLFRLQNLTLTNNYFS-GKIPTNLSRCSNLVKF 111
G+L+ L ++ L N + ++I + LQ L ++ N S + + S +L+
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404
Query: 112 EASNNKLAGESPAEIGNLL--KFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGR 169
S+N L I L + ++L++ N ++ +P + L ALQE+NV N+L
Sbjct: 405 NMSSNILTDT----IFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS- 458
Query: 170 IPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLP 218
+P G+F + ++SL+ I++H N + S P
Sbjct: 459 VP-------------------DGIF---DRLTSLQKIWLHTNPWDCSCP 485
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 465 GKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFT--GSIPSTLSSLKSITELD 521
K+ + LD S+N+ + + G T LE L +Q N I + +KS+ +LD
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 522 LSRNNLS 528
+S+N++S
Sbjct: 381 ISQNSVS 387
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 461 PAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFT 504
PAE+ L NL LD+S N + +P LG C L+Y DN T
Sbjct: 263 PAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 224 NLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGK 283
+L +L I++GN + + S ++LQKL + + G L+ L LN+
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAH 135
Query: 284 NNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQIS- 342
N + + +N T LE L L SN+ ++ L L + ++
Sbjct: 136 NLIQS-----FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 190
Query: 343 -GFIPDGIANLVNLNALGVEFNQLA------VTILKSLQMLFLHENVLQGTIP 388
FI G + L L ++ NQL L SLQ ++LH N + P
Sbjct: 191 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 80 NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAE 139
+L L L LT N S S+L K A LA IG+L + LN+A
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAH 135
Query: 140 NHLRG-QLPASIGNLSALQEINVNGNRL 166
N ++ +LP NL+ L+ ++++ N++
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 24/156 (15%)
Query: 225 LPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSI---------NFGGLQN 275
LP L +F + NN+ SL N++ L++ R+ +S+ +F L+
Sbjct: 276 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 335
Query: 276 LSWLNLGKNNLGTRTAN------DLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLST 329
L LN+ N++ +N +L +++L + T L L ++ A P + NL+
Sbjct: 336 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT- 394
Query: 330 TMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL 365
N+IS D + L +L L + N++
Sbjct: 395 --------KNKISKIESDAFSWLGHLEVLDLGLNEI 422
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 35/236 (14%)
Query: 76 HEVGNLFRLQNLT-LTNNYFSGKIPTNLSRCSNLVKFEA----SNNKLAGESPAEIGNLL 130
+++ ++ LQNLT L Y + +++S +NL K + +N+ L+ SP + N
Sbjct: 98 NKITDISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSP--LSNXT 155
Query: 131 KFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF 190
L + E+ ++ P I NL+ L +++N N++ P + + +L F +NQ
Sbjct: 156 GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI 211
Query: 191 SGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT----------- 239
+ + P+ N + L + I N PL NL L + I N ++
Sbjct: 212 TDI-TPVANXTRLNSLKIGNNKITDLSPL---ANLSQLTWLEIGTNQISDINAVKDLTKL 267
Query: 240 -----GSLQDS----LSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNL 286
GS Q S L+N + L L +N N + GGL NL+ L L +N++
Sbjct: 268 KXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 78 VGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI 137
V N RL +L + NN + P L+ S L E N+++ + + +L K + LN+
Sbjct: 217 VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKXLNV 272
Query: 138 AENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP 195
N + + + NLS L + +N N+LG + NL + + N + + P
Sbjct: 273 GSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 24/156 (15%)
Query: 225 LPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSI---------NFGGLQN 275
LP L +F + NN+ SL N++ L++ R+ +S+ +F L+
Sbjct: 281 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 340
Query: 276 LSWLNLGKNNLGTRTAN------DLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLST 329
L LN+ N++ +N +L +++L + T L L ++ A P + NL+
Sbjct: 341 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT- 399
Query: 330 TMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL 365
N+IS D + L +L L + N++
Sbjct: 400 --------KNKISKIESDAFSWLGHLEVLDLGLNEI 427
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 24/156 (15%)
Query: 225 LPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSI---------NFGGLQN 275
LP L +F + NN+ SL N++ L++ R+ +S+ +F L+
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330
Query: 276 LSWLNLGKNNLGTRTAN------DLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLST 329
L LN+ N++ +N +L +++L + T L L ++ A P + NL+
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT- 389
Query: 330 TMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQL 365
N+IS D + L +L L + N++
Sbjct: 390 --------KNKISKIESDAFSWLGHLEVLDLGLNEI 417
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 80 NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAE 139
+L L L LT N S S+L K A LA IG+L + LN+A
Sbjct: 98 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 157
Query: 140 NHLRG-QLPASIGNLSALQEINVNGNRL 166
N ++ +LP NL+ L+ ++++ N++
Sbjct: 158 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 23/184 (12%)
Query: 176 HVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISG 235
++ NL S N+ NQ + + PI + ++ +F++ N PL NL NL + +
Sbjct: 64 YLPNLTSLNLSNNQITDI-SPIQYLPNVTKLFLNGNKLTDIKPL---ANLKNLGWLFLDE 119
Query: 236 NNLTGSLQDSLSNATNLQKLDINRNLFSGKVSIN-FGGLQNLSWLNLGKNNLGTRTANDL 294
N + L+ N G IN L L L LG N +
Sbjct: 120 NKVKDLSSLKDLKKLKSLSLEHN-----GISDINGLVHLPQLESLYLGNNKITD------ 168
Query: 295 DFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVN 354
IT+L+ TKL+ L L+ N+ ++P LA L T + + N IS +A L N
Sbjct: 169 --ITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAGLKN 221
Query: 355 LNAL 358
L+ L
Sbjct: 222 LDVL 225
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 83 RLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHL 142
L L LT N S S+L K A LA IG+L + LN+A N +
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 143 RG-QLPASIGNLSALQEINVNGNRL 166
+ +LP NL+ L+ ++++ N++
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 235 GNNLTGSL-QDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTAND 293
G N +L QD ++ +L++L++N N+ S F L NL L L N L
Sbjct: 40 GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP--- 96
Query: 294 LDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLV 353
L T L+N TKL++ N+ +L + +L + + G+N + + L
Sbjct: 97 LGVFTGLSNLTKLDI---SENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 354 NLNALGVE 361
+L L +E
Sbjct: 153 SLEQLTLE 160
>pdb|3G04|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
pdb|2XWT|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Blocking Type Tshr Autoantibody
Length = 239
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 183 FNVGLNQFSGMFPPINNISSLEYIFIHR---NIYHGSLPLDIGVNLPNLRFFIISGNNLT 239
FN GL MFP + + S + FI N Y S+P++ L N + NN
Sbjct: 113 FNTGLK----MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168
Query: 240 GSLQDSLSNATNLQKLDINRNLFSGKVSIN-FGGL 273
S+Q N T L + +N+N + + + FGG+
Sbjct: 169 TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 42/199 (21%)
Query: 60 LRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119
L ++ LA N RA +P + +L RL+ L++ ++P L+ +
Sbjct: 129 LETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLA---------------S 172
Query: 120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRN 179
++ E L+ Q L + +R LPASI NL +N
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRS-LPASIANL------------------------QN 207
Query: 180 LISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT 239
L S + + S + P I+++ LE + + + P G P R + +NL
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267
Query: 240 GSLQDSLSNATNLQKLDIN 258
+L + T L+KLD+
Sbjct: 268 -TLPLDIHRLTQLEKLDLR 285
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
N + IT+L+ TKL+ L L+ N+ ++P LA L T + + N IS +A
Sbjct: 141 NKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAG 195
Query: 352 LVNLNAL 358
L NL+ L
Sbjct: 196 LKNLDVL 202
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 227 NLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNL 286
NL+ I+ + + D+ + +L+ LD++ N S S FG L +L +LNL N
Sbjct: 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
Query: 287 GTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS 323
T L +L N T L+ L R G V FS
Sbjct: 111 QT-----LGVTSLFPNLTNLQTL-----RIGNVETFS 137
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 350 ANLVNLNALGVE-FNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
L+NLN L +E + A ++Q L++ N ++ P N+ +LT +LE NDL
Sbjct: 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 15/140 (10%)
Query: 145 QLPASI-GNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPI-NNISS 202
+LPA++ + ++ +N+N ++ ++ + +G N + P + N+
Sbjct: 59 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118
Query: 203 LEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRN-- 260
L + + RN SLP I N P L +S NNL D+ T+LQ L ++ N
Sbjct: 119 LTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 261 ----------LFSGKVSINF 270
LF VS N
Sbjct: 178 THVDLSLIPSLFHANVSYNL 197
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 227 NLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNL 286
NL+ I+ + + D+ + +L+ LD++ N S S FG L +L +LNL N
Sbjct: 77 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 136
Query: 287 GTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFS 323
T L +L N T L+ L R G V FS
Sbjct: 137 QT-----LGVTSLFPNLTNLQTL-----RIGNVETFS 163
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
N + IT+L+ TKL+ L L+ N+ ++P LA L T + + N IS +A
Sbjct: 144 NKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAG 198
Query: 352 LVNLNAL 358
L NL+ L
Sbjct: 199 LKNLDVL 205
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
N + IT+L+ TKL+ L L+ N+ ++P LA L T + + N IS +A
Sbjct: 142 NKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAG 196
Query: 352 LVNLNAL 358
L NL+ L
Sbjct: 197 LKNLDVL 203
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 352 LVNLNALGVE-FNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407
L+NLN L +E + A ++Q L++ N ++ P N+ +LT +LE NDL
Sbjct: 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 15/140 (10%)
Query: 145 QLPASI-GNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPI-NNISS 202
+LPA++ + ++ +N+N ++ ++ + +G N + P + N+
Sbjct: 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124
Query: 203 LEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRN-- 260
L + + RN SLP I N P L +S NNL D+ T+LQ L ++ N
Sbjct: 125 LTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 261 ----------LFSGKVSINF 270
LF VS N
Sbjct: 184 THVDLSLIPSLFHANVSYNL 203
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
N + IT+L+ TKL+ L L+ N+ ++P LA L T + + N IS +A
Sbjct: 144 NKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAG 198
Query: 352 LVNLNAL 358
L NL+ L
Sbjct: 199 LKNLDVL 205
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
N + IT+L+ TKL+ L L+ N+ ++P LA L T + + N IS +A
Sbjct: 162 NKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAG 216
Query: 352 LVNLNAL 358
L NL+ L
Sbjct: 217 LKNLDVL 223
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
N + IT+L+ TKL+ L L+ N+ ++P LA L T + + N IS +A
Sbjct: 162 NKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAG 216
Query: 352 LVNLNAL 358
L NL+ L
Sbjct: 217 LKNLDVL 223
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
N + IT+L+ TKL+ L L+ N+ ++P LA L T + + N IS +A
Sbjct: 162 NKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAG 216
Query: 352 LVNLNAL 358
L NL+ L
Sbjct: 217 LKNLDVL 223
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 292 NDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351
N + IT+L+ TKL+ L L+ N+ ++P LA L T + + N IS +A
Sbjct: 139 NKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAG 193
Query: 352 LVNLNAL 358
L NL+ L
Sbjct: 194 LKNLDVL 200
>pdb|3AT0|A Chain A, Structural And Biochemical Characterization Of Clfb:ligand
Interactions
Length = 338
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 75 PHEVGNLFRLQNLTLTN-----NYFSGKIPTNLSRCSNLVKFEASNNKL 118
P++ GN F N T+T+ +YF+ K+P +L+ + V + SNN +
Sbjct: 30 PNQSGNTFMAANFTVTDKVKSGDYFTAKLPDSLTGNGD-VDYSNSNNTM 77
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 36 VIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFS 95
V LDL H + L P + L L + ++N+ E V NL RLQ L L NN
Sbjct: 465 VTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQ 521
Query: 96 GKIPTN-LSRCSNLVKFEASNNKLAGES 122
L C LV N L E
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEE 549
>pdb|3AU0|A Chain A, Structural And Biochemical Characterization Of Clfb:ligand
Interactions
Length = 339
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 75 PHEVGNLFRLQNLTLTN-----NYFSGKIPTNLSRCSNLVKFEASNNKL 118
P++ GN F N T+T+ +YF+ K+P +L+ + V + SNN +
Sbjct: 31 PNQSGNTFMAANFTVTDKVKSGDYFTAKLPDSLTGNGD-VDYSNSNNTM 78
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 36 VIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFS 95
V LDL H + L P + L L + ++N+ E V NL RLQ L L NN
Sbjct: 465 VTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQ 521
Query: 96 GKIPTN-LSRCSNLVKFEASNNKLAGES 122
L C LV N L E
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEE 549
>pdb|3ASW|A Chain A, Structural And Biochemical Characterization Of Clfb:ligand
Interactions
Length = 328
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 75 PHEVGNLFRLQNLTLTN-----NYFSGKIPTNLSRCSNLVKFEASNNKL 118
P++ GN F N T+T+ +YF+ K+P +L+ + V + SNN +
Sbjct: 30 PNQSGNTFMAANFTVTDKVKSGDYFTAKLPDSLTGNGD-VDYSNSNNTM 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,084,625
Number of Sequences: 62578
Number of extensions: 590637
Number of successful extensions: 1731
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1075
Number of HSP's gapped (non-prelim): 390
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)