Query 041497
Match_columns 568
No_of_seqs 212 out of 2926
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 07:46:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-61 2.7E-66 542.2 35.4 549 1-562 37-594 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-52 2.6E-57 469.9 32.8 509 32-553 91-608 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.2E-39 9.1E-44 307.3 9.1 399 85-559 55-459 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.6E-37 1E-41 293.4 8.6 385 35-429 53-449 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 7.4E-40 1.6E-44 299.2 -11.9 488 35-552 46-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 6.4E-38 1.4E-42 286.5 -11.1 478 33-550 67-562 (565)
7 KOG0618 Serine/threonine phosp 100.0 4.3E-34 9.3E-39 287.3 -2.1 481 34-549 21-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 9.9E-34 2.1E-38 284.7 -0.7 459 34-526 45-511 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.5E-31 5.5E-36 256.2 0.1 362 79-479 4-373 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.7E-31 3.7E-36 257.4 -3.2 362 106-526 7-373 (1255)
11 KOG4237 Extracellular matrix p 99.9 6.2E-28 1.4E-32 221.0 -3.7 286 25-316 49-358 (498)
12 PLN03210 Resistant to P. syrin 99.9 5.9E-22 1.3E-26 222.6 23.0 382 6-430 507-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 9.2E-21 2E-25 213.1 23.7 336 196-550 553-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 4.8E-24 1E-28 195.6 -5.3 271 59-341 68-358 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 7.3E-19 1.6E-23 183.6 13.8 263 226-535 201-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.3E-18 2.9E-23 181.7 15.0 254 204-506 204-460 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 3.9E-16 8.5E-21 164.4 13.6 230 27-288 173-402 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 4.3E-16 9.3E-21 164.1 13.4 257 82-376 178-438 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 3E-18 6.4E-23 167.9 -4.1 281 38-340 2-318 (319)
20 KOG0617 Ras suppressor protein 99.6 4.1E-18 8.8E-23 139.0 -3.8 162 32-198 31-193 (264)
21 cd00116 LRR_RI Leucine-rich re 99.6 5.3E-18 1.2E-22 166.1 -3.9 280 63-364 3-318 (319)
22 KOG0617 Ras suppressor protein 99.6 2.9E-17 6.2E-22 134.1 -4.7 158 54-239 29-186 (264)
23 PLN03150 hypothetical protein; 99.3 6.5E-12 1.4E-16 132.3 10.2 136 2-141 381-526 (623)
24 KOG1909 Ran GTPase-activating 99.2 1.5E-12 3.3E-17 119.0 -1.7 244 33-287 29-311 (382)
25 KOG3207 Beta-tubulin folding c 99.2 2.1E-12 4.5E-17 121.4 -0.9 144 175-318 169-315 (505)
26 KOG1909 Ran GTPase-activating 99.2 4.9E-12 1.1E-16 115.8 -0.0 185 370-554 91-313 (382)
27 KOG0532 Leucine-rich repeat (L 99.1 4.8E-12 1E-16 122.8 -3.3 168 376-553 80-248 (722)
28 KOG1259 Nischarin, modulator o 99.1 2.1E-11 4.6E-16 109.1 0.6 137 414-556 279-416 (490)
29 KOG0532 Leucine-rich repeat (L 99.1 4.4E-12 9.5E-17 123.1 -4.2 175 56-263 73-247 (722)
30 PLN03150 hypothetical protein; 99.1 4E-10 8.7E-15 118.8 9.2 112 447-558 421-534 (623)
31 KOG3207 Beta-tubulin folding c 99.0 3E-11 6.5E-16 113.8 -0.1 209 152-365 119-338 (505)
32 KOG1259 Nischarin, modulator o 99.0 5.3E-11 1.1E-15 106.6 0.6 225 103-345 179-415 (490)
33 KOG4658 Apoptotic ATPase [Sign 99.0 2.5E-10 5.5E-15 122.9 5.4 205 54-265 519-732 (889)
34 PF14580 LRR_9: Leucine-rich r 99.0 2.6E-10 5.7E-15 98.1 4.4 128 414-547 14-148 (175)
35 COG4886 Leucine-rich repeat (L 99.0 4.8E-10 1E-14 113.0 6.8 194 62-288 97-291 (394)
36 PF14580 LRR_9: Leucine-rich r 99.0 2.8E-10 6.1E-15 97.9 3.2 109 54-167 15-126 (175)
37 COG4886 Leucine-rich repeat (L 99.0 1.1E-09 2.4E-14 110.4 7.4 195 38-241 97-292 (394)
38 KOG4658 Apoptotic ATPase [Sign 98.9 3.5E-10 7.6E-15 121.8 3.5 106 34-140 545-652 (889)
39 PF13855 LRR_8: Leucine rich r 98.9 5.8E-10 1.3E-14 78.7 3.0 61 491-551 1-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 4.7E-09 1E-13 74.1 3.4 60 468-527 1-61 (61)
41 KOG1859 Leucine-rich repeat pr 98.7 4E-10 8.8E-15 112.6 -5.1 130 419-555 164-295 (1096)
42 KOG2982 Uncharacterized conser 98.7 7.6E-09 1.6E-13 93.0 1.9 236 75-310 38-285 (418)
43 KOG0531 Protein phosphatase 1, 98.7 3.4E-09 7.3E-14 107.0 -0.6 173 373-556 142-322 (414)
44 KOG0531 Protein phosphatase 1, 98.6 5.6E-09 1.2E-13 105.4 -1.1 130 55-191 69-199 (414)
45 KOG2120 SCF ubiquitin ligase, 98.6 7.6E-10 1.6E-14 99.3 -7.1 224 83-314 137-373 (419)
46 KOG2120 SCF ubiquitin ligase, 98.5 5.5E-09 1.2E-13 93.8 -4.5 177 83-261 186-374 (419)
47 KOG2982 Uncharacterized conser 98.4 3.8E-08 8.2E-13 88.6 -1.2 104 179-282 174-287 (418)
48 COG5238 RNA1 Ran GTPase-activa 98.3 7.6E-08 1.7E-12 85.5 -1.0 180 34-213 30-254 (388)
49 COG5238 RNA1 Ran GTPase-activa 98.2 2.3E-07 4.9E-12 82.6 0.4 186 370-555 91-319 (388)
50 KOG1859 Leucine-rich repeat pr 98.2 2.2E-07 4.8E-12 93.6 -1.0 105 447-556 167-271 (1096)
51 KOG4341 F-box protein containi 98.2 3.8E-08 8.3E-13 92.8 -6.1 251 176-430 162-437 (483)
52 KOG4579 Leucine-rich repeat (L 98.1 2E-07 4.4E-12 74.1 -2.2 108 448-559 57-166 (177)
53 KOG4341 F-box protein containi 98.0 1.5E-07 3.3E-12 88.8 -5.5 273 250-526 138-437 (483)
54 KOG4579 Leucine-rich repeat (L 98.0 8E-07 1.7E-11 70.8 -1.0 106 34-143 27-136 (177)
55 PF12799 LRR_4: Leucine Rich r 97.9 7.8E-06 1.7E-10 52.6 2.2 36 492-528 2-37 (44)
56 KOG1644 U2-associated snRNP A' 97.9 2.9E-05 6.2E-10 66.5 5.6 59 59-119 43-101 (233)
57 PF12799 LRR_4: Leucine Rich r 97.8 2.4E-05 5.1E-10 50.3 2.9 40 515-555 1-40 (44)
58 KOG1644 U2-associated snRNP A' 97.7 5.6E-05 1.2E-09 64.8 4.5 103 447-551 45-152 (233)
59 KOG3665 ZYG-1-like serine/thre 97.5 2.1E-05 4.5E-10 83.3 0.3 108 82-191 122-233 (699)
60 PRK15386 type III secretion pr 97.5 0.00035 7.5E-09 68.2 8.2 32 491-525 156-187 (426)
61 PF13306 LRR_5: Leucine rich r 97.5 0.00026 5.6E-09 58.7 6.4 107 52-163 6-112 (129)
62 KOG3665 ZYG-1-like serine/thre 97.4 2.8E-05 6.1E-10 82.3 -0.4 117 200-318 147-264 (699)
63 PF08263 LRRNT_2: Leucine rich 97.4 4.8E-05 1E-09 48.8 0.6 30 1-30 11-43 (43)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00046 9.9E-09 57.2 6.2 122 390-542 7-129 (129)
65 PRK15386 type III secretion pr 97.1 0.0026 5.7E-08 62.2 9.4 56 54-116 48-104 (426)
66 KOG2739 Leucine-rich acidic nu 96.7 0.001 2.2E-08 59.8 2.5 39 80-118 63-103 (260)
67 KOG1947 Leucine rich repeat pr 96.5 0.00046 9.9E-09 71.8 -1.4 32 390-421 357-389 (482)
68 KOG2739 Leucine-rich acidic nu 96.3 0.0025 5.4E-08 57.4 2.7 97 447-545 46-149 (260)
69 KOG2123 Uncharacterized conser 96.3 0.00019 4.2E-09 64.7 -4.5 82 58-143 19-101 (388)
70 KOG2123 Uncharacterized conser 96.1 0.0004 8.6E-09 62.7 -3.6 82 225-315 18-99 (388)
71 KOG1947 Leucine rich repeat pr 95.8 0.0014 2.9E-08 68.3 -1.8 62 490-551 361-439 (482)
72 PF00560 LRR_1: Leucine Rich R 94.9 0.011 2.5E-07 31.3 0.8 12 493-504 2-13 (22)
73 PF00560 LRR_1: Leucine Rich R 94.4 0.02 4.4E-07 30.3 1.0 19 60-79 2-20 (22)
74 KOG4308 LRR-containing protein 93.8 0.00089 1.9E-08 68.0 -9.1 184 331-529 89-304 (478)
75 KOG3864 Uncharacterized conser 93.8 0.0061 1.3E-07 52.7 -2.7 80 447-526 104-187 (221)
76 KOG0473 Leucine-rich repeat pr 93.4 0.0035 7.6E-08 55.2 -4.9 88 463-553 37-125 (326)
77 KOG0473 Leucine-rich repeat pr 93.4 0.0032 7E-08 55.5 -5.2 88 77-167 37-124 (326)
78 PF13504 LRR_7: Leucine rich r 92.5 0.074 1.6E-06 26.1 1.1 13 469-481 2-14 (17)
79 KOG4308 LRR-containing protein 91.8 0.0022 4.7E-08 65.2 -9.6 203 252-478 89-328 (478)
80 KOG3864 Uncharacterized conser 90.8 0.04 8.8E-07 47.8 -1.4 82 34-115 101-185 (221)
81 smart00370 LRR Leucine-rich re 89.5 0.32 6.9E-06 26.9 2.0 19 515-533 2-20 (26)
82 smart00369 LRR_TYP Leucine-ric 89.5 0.32 6.9E-06 26.9 2.0 19 515-533 2-20 (26)
83 PF13516 LRR_6: Leucine Rich r 88.2 0.1 2.2E-06 28.3 -0.6 14 515-528 2-15 (24)
84 smart00370 LRR Leucine-rich re 87.4 0.37 7.9E-06 26.6 1.3 16 491-506 2-17 (26)
85 smart00369 LRR_TYP Leucine-ric 87.4 0.37 7.9E-06 26.6 1.3 16 491-506 2-17 (26)
86 smart00365 LRR_SD22 Leucine-ri 68.0 4.7 0.0001 22.3 1.8 14 515-528 2-15 (26)
87 smart00364 LRR_BAC Leucine-ric 67.5 4 8.7E-05 22.6 1.4 17 469-486 3-19 (26)
88 smart00368 LRR_RI Leucine rich 65.0 4.4 9.6E-05 22.8 1.3 14 539-552 2-15 (28)
89 KOG3763 mRNA export factor TAP 63.1 3.1 6.7E-05 42.3 0.7 63 466-529 216-284 (585)
90 KOG3763 mRNA export factor TAP 46.6 13 0.00028 38.0 2.1 68 271-343 215-284 (585)
91 smart00367 LRR_CC Leucine-rich 46.3 14 0.0003 20.2 1.3 12 468-479 2-13 (26)
92 KOG4242 Predicted myosin-I-bin 44.7 1.5E+02 0.0032 30.2 8.7 279 276-555 137-484 (553)
93 TIGR00864 PCC polycystin catio 26.7 36 0.00078 42.3 1.8 31 474-504 1-32 (2740)
94 KOG1665 AFH1-interacting prote 23.8 59 0.0013 29.0 2.1 7 474-480 262-268 (302)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-61 Score=542.20 Aligned_cols=549 Identities=34% Similarity=0.551 Sum_probs=503.3
Q ss_pred CcccCCCCCCCCCCCCCCCCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccC-
Q 041497 1 MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVG- 79 (568)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~- 79 (568)
||.++.||.++++.|+...+||.|.|+.|.. ..+++.||++++.+.+..+..+..+++|++|++++|.+.+.+|..+.
T Consensus 37 ~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~ 115 (968)
T PLN00113 37 FKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT 115 (968)
T ss_pred HHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhc
Confidence 5778889999999998888999999999974 46899999999999998888999999999999999999888887655
Q ss_pred CCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeE
Q 041497 80 NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEI 159 (568)
Q Consensus 80 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 159 (568)
.+++|++|++++|.+++..|. ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..++++++|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 999999999999999877775 568999999999999998899999999999999999999998999999999999999
Q ss_pred EeccCCCCCCCCccccccccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCcc
Q 041497 160 NVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNL 238 (568)
Q Consensus 160 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 238 (568)
++++|.+.+..|..+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l 272 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKL 272 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCee
Confidence 999999998899999999999999999999987777 889999999999999999887887665 899999999999999
Q ss_pred ccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccC
Q 041497 239 TGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGA 318 (568)
Q Consensus 239 ~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 318 (568)
.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+....+. .+..+++|+.|++++|.+.+
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV------ALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh------hHhcCCCCCEEECcCCCCcC
Confidence 988888899999999999999999988888899999999999999998765443 46788999999999999998
Q ss_pred cCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhh------ccCCCeeECccCccccccCcccc
Q 041497 319 VLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLG 392 (568)
Q Consensus 319 ~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~ 392 (568)
..+..+..... ++.|++++|.+.+..|..+..+.+|+.++++.|.+.... +++|+.|++++|.+++..+..+.
T Consensus 347 ~~p~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 347 EIPKNLGKHNN-LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred cCChHHhCCCC-CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence 88887777654 999999999999999999999999999999999886433 78999999999999999999999
Q ss_pred CcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcE
Q 041497 393 NLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVS 472 (568)
Q Consensus 393 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~ 472 (568)
.++.|+.+++++|.+++..+..+..+++|+.|++++|++.+..|..+. ...+ +.|++++|++++..|..+..+++|+.
T Consensus 426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L-~~L~ls~n~l~~~~~~~~~~l~~L~~ 503 (968)
T PLN00113 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRL-ENLDLSRNQFSGAVPRKLGSLSELMQ 503 (968)
T ss_pred cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccc-eEEECcCCccCCccChhhhhhhccCE
Confidence 999999999999999998888888999999999999999888877553 3445 99999999999999999999999999
Q ss_pred EecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcc
Q 041497 473 LDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 551 (568)
Q Consensus 473 L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 551 (568)
|++++|++.+.+|..+. +++|+.|+|++|.+++.+|..|..+++|+.||+++|.+++.+|..+..+++|+.+++++|++
T Consensus 504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 99999999999999887 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccc
Q 041497 552 ESKSLFVWPFV 562 (568)
Q Consensus 552 ~~~~~~~~~~~ 562 (568)
.+.+|...++.
T Consensus 584 ~~~~p~~~~~~ 594 (968)
T PLN00113 584 HGSLPSTGAFL 594 (968)
T ss_pred eeeCCCcchhc
Confidence 99999875543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-52 Score=469.90 Aligned_cols=509 Identities=29% Similarity=0.469 Sum_probs=462.3
Q ss_pred CCCeEEEEeccCCccccccCCcc-cCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcE
Q 041497 32 RHQRVIGLDLRHQSIGGFLSPFV-GNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVK 110 (568)
Q Consensus 32 ~~~~i~~L~l~~~~i~~~~~~~~-~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 110 (568)
..+.++.|+|++|.+.+..+..+ ..+++|++|++++|.+.+.+|. +.+++|++|++++|.+++..|..++.+++|++
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 35789999999999987766654 5999999999999999887775 46899999999999999889999999999999
Q ss_pred EeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccc
Q 041497 111 FEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF 190 (568)
Q Consensus 111 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (568)
|++++|.+.+.+|..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 99999999888999999999999999999999989999999999999999999999989999999999999999999999
Q ss_pred ccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCC
Q 041497 191 SGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSIN 269 (568)
Q Consensus 191 ~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~ 269 (568)
.+..+ .+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 88777 899999999999999999888887776 8899999999999999888999999999999999999999888888
Q ss_pred ccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhh
Q 041497 270 FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI 349 (568)
Q Consensus 270 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~ 349 (568)
+..+++|+.|++++|.+....+. .+..+++|+.|++++|++.+..+..+.... +++.+++++|.+.+..|..+
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~------~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~ 400 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPK------NLGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSL 400 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCCh------HHhCCCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCHHH
Confidence 99999999999999998764442 467889999999999999988887776654 49999999999999999999
Q ss_pred hhhccccccCccccccchh------hccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceE
Q 041497 350 ANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLIL 423 (568)
Q Consensus 350 ~~~~~L~~l~l~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 423 (568)
..+++|+.+++++|.+... .+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+..|..+ ..++|+.
T Consensus 401 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~ 479 (968)
T PLN00113 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLEN 479 (968)
T ss_pred hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceE
Confidence 9999999999999988643 38899999999999999888888999999999999999988777655 4689999
Q ss_pred EEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeeccccc
Q 041497 424 LTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNS 502 (568)
Q Consensus 424 L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~ 502 (568)
|++++|++.+..|..+..+..+ +.|++++|.+.+..|..+..+++|++|++++|.+++.+|..+. +++|+.|+|++|+
T Consensus 480 L~ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 480 LDLSRNQFSGAVPRKLGSLSEL-MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred EECcCCccCCccChhhhhhhcc-CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence 9999999999999999998888 9999999999999999999999999999999999999999988 9999999999999
Q ss_pred ccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccc
Q 041497 503 FTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFES 553 (568)
Q Consensus 503 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 553 (568)
+++.+|..+.+++.|+.|++++|++.+.+|.. .....+......+|+.-|
T Consensus 559 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 559 LSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLC 608 (968)
T ss_pred ccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCcccc
Confidence 99999999999999999999999999888864 445566666778887544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-39 Score=307.25 Aligned_cols=399 Identities=22% Similarity=0.215 Sum_probs=306.8
Q ss_pred cEEeCCCCcCCCCCCcccccC--CCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEec
Q 041497 85 QNLTLTNNYFSGKIPTNLSRC--SNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVN 162 (568)
Q Consensus 85 ~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 162 (568)
..|+++++.+.......+.+. +.-+.|++++|++..+.+..|.++++|+.+++..|.+. .+|...+...+|+.|++.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence 345555555543333333322 23455777777777777777777888888888777776 566655555667888888
Q ss_pred cCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCcccccc
Q 041497 163 GNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSL 242 (568)
Q Consensus 163 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 242 (568)
+|.+.....+.+..++.|+.||++.|.+.. ++...|..-.++++|++++|.++...
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~------------------------i~~~sfp~~~ni~~L~La~N~It~l~ 189 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISE------------------------IPKPSFPAKVNIKKLNLASNRITTLE 189 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhc------------------------ccCCCCCCCCCceEEeeccccccccc
Confidence 877776666667777777777777776653 33333324456778888888877777
Q ss_pred CccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCch
Q 041497 243 QDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPF 322 (568)
Q Consensus 243 ~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 322 (568)
...|..+.+|..|.|++|.++..++..|..+++|+.|++..|.+...... .|..+++|+.+.+..|++....+.
T Consensus 190 ~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l------tFqgL~Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 190 TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL------TFQGLPSLQNLKLQRNDISKLDDG 263 (873)
T ss_pred cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh------hhcCchhhhhhhhhhcCcccccCc
Confidence 77777888888888888888877777788888888888888877765432 366778888888887777665444
Q ss_pred hhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCccccccccc
Q 041497 323 SLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLL 402 (568)
Q Consensus 323 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 402 (568)
.|.++ .+++.|++..|+++..-..++-++++|+.|++
T Consensus 264 ~Fy~l-------------------------------------------~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 264 AFYGL-------------------------------------------EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL 300 (873)
T ss_pred ceeee-------------------------------------------cccceeecccchhhhhhcccccccchhhhhcc
Confidence 44333 33455555555555555567788899999999
Q ss_pred ccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccc
Q 041497 403 EVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSG 482 (568)
Q Consensus 403 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 482 (568)
++|.+...-+++++.+++|++|++++|++....+..|..+..+ +.|+|++|+++.....+|..+++|++|||++|.++.
T Consensus 301 S~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L-e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 301 SYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL-EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred chhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh-hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence 9999988888899999999999999999988888888888877 999999999997777899999999999999999875
Q ss_pred cCCC---ccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCC
Q 041497 483 EIPT---TLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFV 558 (568)
Q Consensus 483 ~~~~---~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 558 (568)
.+.+ .|. +++|+.|++-||+++.+...+|..++.|++|||.+|.|-.+-|+.|+.+ .|++|.++.-.+-|.|.-.
T Consensus 380 ~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 380 CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred EEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHH
Confidence 5544 344 9999999999999998888899999999999999999998999999998 9999999999999999988
Q ss_pred c
Q 041497 559 W 559 (568)
Q Consensus 559 ~ 559 (568)
|
T Consensus 459 W 459 (873)
T KOG4194|consen 459 W 459 (873)
T ss_pred H
Confidence 7
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-37 Score=293.37 Aligned_cols=385 Identities=19% Similarity=0.218 Sum_probs=330.5
Q ss_pred eEEEEeccCCccccccCCcccC--CCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEe
Q 041497 35 RVIGLDLRHQSIGGFLSPFVGN--LSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFE 112 (568)
Q Consensus 35 ~i~~L~l~~~~i~~~~~~~~~~--~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 112 (568)
..+.||.+++.+.......+.. .+..+.|++++|++....+..|.++++|+.+++.+|.++ .+|.......+|+.|+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence 3455677776665433333321 246778999999999888888999999999999999998 7887666777899999
Q ss_pred ccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccccc
Q 041497 113 ASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG 192 (568)
Q Consensus 113 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (568)
|.+|.+...-.+.+..++.|+.|||+.|.++..-...|..-+++++|++++|.+++.....|..+.+|..|.++.|.++.
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence 99999988778889999999999999999987777778888899999999999998888889999999999999999998
Q ss_pred CCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCcc
Q 041497 193 MFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFG 271 (568)
Q Consensus 193 ~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~ 271 (568)
... .|.++++|+.|++..|.+. .+....|+++++|+.|.+..|.+......+|..+.++++|+|+.|+++.....++.
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred cCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence 877 8888999999999999886 45455667999999999999998877778888999999999999999988888889
Q ss_pred CCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhh
Q 041497 272 GLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351 (568)
Q Consensus 272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~ 351 (568)
+++.|+.|++++|.|..+..+. +..+++|+.|++++|+++...+..+..+.. +++|+++.|.+......+|..
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~------WsftqkL~~LdLs~N~i~~l~~~sf~~L~~-Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDS------WSFTQKLKELDLSSNRITRLDEGSFRVLSQ-LEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred ccchhhhhccchhhhheeecch------hhhcccceeEeccccccccCChhHHHHHHH-hhhhcccccchHHHHhhHHHH
Confidence 9999999999999999888764 456789999999999999998888888876 999999999998888888999
Q ss_pred hccccccCccccccchhh---------ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCce
Q 041497 352 LVNLNALGVEFNQLAVTI---------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLI 422 (568)
Q Consensus 352 ~~~L~~l~l~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 422 (568)
+.+|+.||++.|.++... ++.|+.|.+.+|++.......|.+++.|++|++.+|.+.++.+.+|..+ +|+
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk 442 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELK 442 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhh
Confidence 999999999999885433 8899999999999987777889999999999999999988899999888 888
Q ss_pred EEEcccC
Q 041497 423 LLTTRKN 429 (568)
Q Consensus 423 ~L~l~~~ 429 (568)
.|.+..-
T Consensus 443 ~Lv~nSs 449 (873)
T KOG4194|consen 443 ELVMNSS 449 (873)
T ss_pred hhhhccc
Confidence 8877643
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=7.4e-40 Score=299.18 Aligned_cols=488 Identities=25% Similarity=0.404 Sum_probs=291.1
Q ss_pred eEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEecc
Q 041497 35 RVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 114 (568)
Q Consensus 35 ~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 114 (568)
.+..+++++|.+.. ..+++.++.-+.++++++|.+. ..|.+++.+..++.++.++|.+. .+|+.+..+.+|+.++++
T Consensus 46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 34556666666553 3345666666777777777665 56666777777777777777766 666666677777777777
Q ss_pred CCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCC
Q 041497 115 NNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194 (568)
Q Consensus 115 ~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (568)
+|.+. ..+++++.+..|+.++..+|++. ..|.++..+.+|..+++.+|.+. ..|...-.++.|+++|...|-+...+
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP 199 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETLP 199 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcCC
Confidence 77666 45666666667777777766666 56666666677777777776665 33333333666777777666666555
Q ss_pred CCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCC
Q 041497 195 PPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQ 274 (568)
Q Consensus 195 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~ 274 (568)
+.++.+.+|+.|++..|.+. .+| .+. ++..|++++++.|++.-........++++..|++.+|+++ ..|..+.-+.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~-gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr 275 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIR-FLP-EFP-GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR 275 (565)
T ss_pred hhhcchhhhHHHHhhhcccc-cCC-CCC-ccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence 56666666666666666654 444 222 5566666666666665332333345666666666666665 3344455556
Q ss_pred CCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhccccc-ceEEEcccCcccCCCChhhhhhc
Q 041497 275 NLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTT-MTGIAFGNNQISGFIPDGIANLV 353 (568)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~L~l~~~~l~~~~~~~~~~~~ 353 (568)
+|.+|++++|.++..++. ++++ +|+.|.+.+|.+..+-...+.+.... +++|.= .+.+. .+..-.
T Consensus 276 sL~rLDlSNN~is~Lp~s-------Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~d---glS~se 341 (565)
T KOG0472|consen 276 SLERLDLSNNDISSLPYS-------LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDD---GLSQSE 341 (565)
T ss_pred hhhhhcccCCccccCCcc-------cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccC---CCCCCc
Confidence 666666666666665553 5555 56666666665544322222111100 111100 00000 000000
Q ss_pred cccccCccccccc---hhhccCCCeeECccCccccccCccccCccc---ccccccccccccCCCCCCccCCCCceEEEcc
Q 041497 354 NLNALGVEFNQLA---VTILKSLQMLFLHENVLQGTIPSFLGNLTM---LTQRLLEVNDLLGNIPPSIGNCKNLILLTTR 427 (568)
Q Consensus 354 ~L~~l~l~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 427 (568)
.=+.-....-+.. .-...+.+.|++++-+++ .+|+....-.. .+..+++.|++. +.|..+..+..+.+.-+.
T Consensus 342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVL 419 (565)
T ss_pred ccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHh
Confidence 0000000000000 000334555555555554 33333222112 455556666654 344444443333333233
Q ss_pred cCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeeccccccccc
Q 041497 428 KNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGS 506 (568)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~ 506 (568)
.++..+.+|..++.++++ +.|+|++|-+. ..|..++.+..|+.|+++.|+|. ..|.... ...++.+-.++|++...
T Consensus 420 snn~isfv~~~l~~l~kL-t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 420 SNNKISFVPLELSQLQKL-TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred hcCccccchHHHHhhhcc-eeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence 333344555666666666 77788888777 67777888888899999999887 7777766 67777777777888877
Q ss_pred CCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCccc
Q 041497 507 IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 552 (568)
Q Consensus 507 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 552 (568)
.+.++.+|.+|++||+.+|.+. .+|..++++.+|++|+++||++.
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 7778999999999999999998 46778999999999999999998
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.4e-38 Score=286.51 Aligned_cols=478 Identities=22% Similarity=0.318 Sum_probs=373.5
Q ss_pred CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEe
Q 041497 33 HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFE 112 (568)
Q Consensus 33 ~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 112 (568)
...++++++++|.... .+++++.+..+..+++++|++. .+|..+..+..|+.+++++|.+. ..++.++.+..|+.++
T Consensus 67 L~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLD 143 (565)
T ss_pred ccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhh
Confidence 4668899999998886 4567999999999999999998 78999999999999999999998 7888899999999999
Q ss_pred ccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccccc
Q 041497 113 ASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG 192 (568)
Q Consensus 113 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (568)
..+|+++ ..|.++..+.+|..+++.+|++... |...-+++.|++|+..+|-+. .+|..++.+.+|..|++..|++..
T Consensus 144 ~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 144 ATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF 220 (565)
T ss_pred ccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc
Confidence 9999998 7889999999999999999999954 444445999999999999887 899999999999999999999986
Q ss_pred CCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccC
Q 041497 193 MFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGG 272 (568)
Q Consensus 193 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~ 272 (568)
.+ .|..+..|.++++..|.+. .+|....++++++.+||+++|++. ..|+.+..+++|+.|++++|.+++ .|..+++
T Consensus 221 lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgn 296 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGN 296 (565)
T ss_pred CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCccccc
Confidence 54 8999999999999999887 788888889999999999999999 568888889999999999999984 4566889
Q ss_pred CCCCcEEECCCCCCCCcCCCCchhhhcccCCCc---ccEEE-------eccCcccCc-----Cchhh--hcccccceEEE
Q 041497 273 LQNLSWLNLGKNNLGTRTANDLDFITLLTNCTK---LEVLV-------LDSNRFGAV-----LPFSL--ANLSTTMTGIA 335 (568)
Q Consensus 273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~---L~~L~-------l~~~~~~~~-----~~~~~--~~~~~~l~~L~ 335 (568)
+ .|+.|-+.+|++.++... +-.++. |++|. ++...-... .++.+ .......+.|+
T Consensus 297 l-hL~~L~leGNPlrTiRr~-------ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~ 368 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRRE-------IISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILD 368 (565)
T ss_pred c-eeeehhhcCCchHHHHHH-------HHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhc
Confidence 9 999999999999775432 111111 11110 111000000 00000 11112345556
Q ss_pred cccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCc
Q 041497 336 FGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSI 415 (568)
Q Consensus 336 l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 415 (568)
++.-+++....+.|..-+ -.-...++++.|++. ++|..+..+..+.+.-+..+++.+..+..+
T Consensus 369 ~s~~qlt~VPdEVfea~~----------------~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l 431 (565)
T KOG0472|consen 369 VSDKQLTLVPDEVFEAAK----------------SEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLEL 431 (565)
T ss_pred ccccccccCCHHHHHHhh----------------hcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHH
Confidence 666555554444444432 123668888888887 677777777777666555555556777778
Q ss_pred cCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccc
Q 041497 416 GNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLE 494 (568)
Q Consensus 416 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~ 494 (568)
..+++|..|++++|.+. .+|..+..+..+ +.+|++.|++. ..|..+-.+..++.+-.++|++...-++.+. +.+|.
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L-q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRL-QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhh-heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 88999999999988766 688888888887 99999999998 7888888888899999999999855555455 99999
Q ss_pred eeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCc
Q 041497 495 YLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 550 (568)
Q Consensus 495 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 550 (568)
.|||.+|.+. .+|..+++|.+|++|++.+|++. ..++.+---.....+..-+++
T Consensus 509 tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrdr 562 (565)
T KOG0472|consen 509 TLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRDR 562 (565)
T ss_pred eeccCCCchh-hCChhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHhccc
Confidence 9999999998 88889999999999999999998 444433333333333333333
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=4.3e-34 Score=287.32 Aligned_cols=481 Identities=27% Similarity=0.341 Sum_probs=328.6
Q ss_pred CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497 34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 113 (568)
..++.|+++.|..-..+.+++.+..+|+.|++++|.+. .+|..+..+++|+.|+++.|.+. ..|....++.+|+++.|
T Consensus 21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhee
Confidence 34666677666555544555555555777777777665 56667777777777777777776 55666667777777777
Q ss_pred cCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccC
Q 041497 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGM 193 (568)
Q Consensus 114 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (568)
..|++. ..|..+..+.+|++|+++.|... ..|..+..+..++.+..++|..... ++... ++.+++..+.+.+.
T Consensus 99 ~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~ 171 (1081)
T KOG0618|consen 99 KNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGS 171 (1081)
T ss_pred ccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccc
Confidence 777666 56777777777777777777666 5666666677777777776622111 22222 56666666666655
Q ss_pred CC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccC
Q 041497 194 FP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGG 272 (568)
Q Consensus 194 ~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~ 272 (568)
+. .+..+++ .|+++.|.+. ..... .+++|+.+....|++.... ..-++|+.|+.++|.+..... ...
T Consensus 172 ~~~~i~~l~~--~ldLr~N~~~-~~dls---~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~ 239 (1081)
T KOG0618|consen 172 FLIDIYNLTH--QLDLRYNEME-VLDLS---NLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPV 239 (1081)
T ss_pred hhcchhhhhe--eeecccchhh-hhhhh---hccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccc
Confidence 54 4555444 5777776654 22221 4566777766666655321 123567777777777763322 234
Q ss_pred CCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhh
Q 041497 273 LQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANL 352 (568)
Q Consensus 273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~ 352 (568)
..+|++++++.+++...+ .++..|.+|+.+.+..|+++.. +..+.... +++.+....|.+.. +|......
T Consensus 240 p~nl~~~dis~n~l~~lp-------~wi~~~~nle~l~~n~N~l~~l-p~ri~~~~-~L~~l~~~~nel~y-ip~~le~~ 309 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLP-------EWIGACANLEALNANHNRLVAL-PLRISRIT-SLVSLSAAYNELEY-IPPFLEGL 309 (1081)
T ss_pred cccceeeecchhhhhcch-------HHHHhcccceEecccchhHHhh-HHHHhhhh-hHHHHHhhhhhhhh-CCCccccc
Confidence 467888888888877665 2467788888888888887543 33333332 37777777777764 45566777
Q ss_pred ccccccCccccccchhh-------ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEE
Q 041497 353 VNLNALGVEFNQLAVTI-------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLT 425 (568)
Q Consensus 353 ~~L~~l~l~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 425 (568)
+.|++|++..|++.... ...|..++.+.+.+.......=..+..|+.|++.+|.+++.....+.+..+|+.|+
T Consensus 310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 78888888888774322 23366666676766643333334477889999999999888888888999999999
Q ss_pred cccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecccccccc
Q 041497 426 TRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTG 505 (568)
Q Consensus 426 l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~ 505 (568)
+++|++.......+.++..+ +.|+||+|+++ .+|..+..++.|++|...+|++. .+|....++.|+.+|++.|+++.
T Consensus 390 LsyNrL~~fpas~~~kle~L-eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 390 LSYNRLNSFPASKLRKLEEL-EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred ecccccccCCHHHHhchHHh-HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhh
Confidence 99998876655566677777 88899999998 77788899999999999999987 78855559999999999998875
Q ss_pred c-CCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccC
Q 041497 506 S-IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 549 (568)
Q Consensus 506 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 549 (568)
. +++...+ |+|+.||++||.-.......|..++++...++.-+
T Consensus 467 ~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 467 VTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 3 2333333 78999999999865556667777788877777766
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=9.9e-34 Score=284.74 Aligned_cols=459 Identities=27% Similarity=0.333 Sum_probs=373.2
Q ss_pred CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497 34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 113 (568)
-++++||+++|++.. .+..+..+.+|+.|+++.|.+. ..|.++.++.+|++++|.+|.+. ..|..+..+.+|++|++
T Consensus 45 v~L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISS-FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDL 121 (1081)
T ss_pred eeeEEeecccccccc-CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccccccc
Confidence 449999999999886 5667889999999999999987 67889999999999999999988 89999999999999999
Q ss_pred cCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccC
Q 041497 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGM 193 (568)
Q Consensus 114 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (568)
+.|.+. ..|..+..++.+..+..++|... ..++... ++.+++..+.+.+.++..+..++. .+++++|.+.
T Consensus 122 S~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~----~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-- 191 (1081)
T KOG0618|consen 122 SFNHFG-PIPLVIEVLTAEEELAASNNEKI----QRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-- 191 (1081)
T ss_pred chhccC-CCchhHHhhhHHHHHhhhcchhh----hhhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh--
Confidence 999988 77889999999999999998221 2233333 899999999999888888888877 7999999887
Q ss_pred CCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCC
Q 041497 194 FPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGL 273 (568)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~ 273 (568)
..++.++..|+.++...+.+..... ..++++.|+.+.|.++...+ .....+|+.++++++.+...+ .+++.+
T Consensus 192 ~~dls~~~~l~~l~c~rn~ls~l~~-----~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp-~wi~~~ 263 (1081)
T KOG0618|consen 192 VLDLSNLANLEVLHCERNQLSELEI-----SGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLP-EWIGAC 263 (1081)
T ss_pred hhhhhhccchhhhhhhhcccceEEe-----cCcchheeeeccCcceeecc--ccccccceeeecchhhhhcch-HHHHhc
Confidence 4478888899999888887652111 45789999999998884322 234568999999999998665 889999
Q ss_pred CCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhc
Q 041497 274 QNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLV 353 (568)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~ 353 (568)
.+|+.++...|.+...+. .+...++|+.+.+..|++..+.+. ..+. ..+++|++..|++....+..+....
T Consensus 264 ~nle~l~~n~N~l~~lp~-------ri~~~~~L~~l~~~~nel~yip~~-le~~-~sL~tLdL~~N~L~~lp~~~l~v~~ 334 (1081)
T KOG0618|consen 264 ANLEALNANHNRLVALPL-------RISRITSLVSLSAAYNELEYIPPF-LEGL-KSLRTLDLQSNNLPSLPDNFLAVLN 334 (1081)
T ss_pred ccceEecccchhHHhhHH-------HHhhhhhHHHHHhhhhhhhhCCCc-cccc-ceeeeeeehhccccccchHHHhhhh
Confidence 999999999999865443 355678899999999988775433 2222 3499999999999876665555554
Q ss_pred c-ccccCccccccchhh------ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEc
Q 041497 354 N-LNALGVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTT 426 (568)
Q Consensus 354 ~-L~~l~l~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 426 (568)
. ++.++.+.+.+.... .+.|+.|++.+|.+++.....+.++..|+.|++++|++.......+.++..|+.|++
T Consensus 335 ~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L 414 (1081)
T KOG0618|consen 335 ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL 414 (1081)
T ss_pred HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence 4 777777777764332 788999999999999988888999999999999999998777778899999999999
Q ss_pred ccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccc-cCCCcccccccceeecccccccc
Q 041497 427 RKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSG-EIPTTLGCTSLEYLCMQDNSFTG 505 (568)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~-~~~~~~~~~~L~~L~Ls~n~l~~ 505 (568)
++|++. .+|+....+..+ +.|....|++. ..| .++.+++|+.+|+|.|.++. .+|.....++|++||++||.-..
T Consensus 415 SGNkL~-~Lp~tva~~~~L-~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 415 SGNKLT-TLPDTVANLGRL-HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred ccchhh-hhhHHHHhhhhh-HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence 999987 466888888888 89999999998 667 89999999999999999872 23333335999999999997433
Q ss_pred cCCccCcCCCCCCEEeCCCCc
Q 041497 506 SIPSTLSSLKSITELDLSRNN 526 (568)
Q Consensus 506 ~~~~~~~~l~~L~~L~l~~n~ 526 (568)
.....|..++.+...++.-++
T Consensus 491 ~d~~~l~~l~~l~~~~i~~~~ 511 (1081)
T KOG0618|consen 491 FDHKTLKVLKSLSQMDITLNN 511 (1081)
T ss_pred cchhhhHHhhhhhheecccCC
Confidence 444567777788888887773
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.5e-31 Score=256.21 Aligned_cols=362 Identities=23% Similarity=0.352 Sum_probs=260.2
Q ss_pred CCCCCCcEEeCCCCcCC-CCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCC
Q 041497 79 GNLFRLQNLTLTNNYFS-GKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQ 157 (568)
Q Consensus 79 ~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 157 (568)
+-++..+-+|+++|.++ +.+|.....++.++.|.+.+.++. .+|+.++.+.+|++|++++|.+. .+-..+..+|.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 44666777888888887 678888999999999999988887 78999999999999999999887 4556688889999
Q ss_pred eEEeccCCCCC-CCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCC
Q 041497 158 EINVNGNRLGG-RIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGN 236 (568)
Q Consensus 158 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 236 (568)
.+++.+|++.. -+|..+.++..|..||++.|++.+.+..+...+++-+|+++.|++. .+|-..+.++..|-.||+++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence 99999988765 5788888999999999999998877767778888888888888876 777777777888888888888
Q ss_pred ccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcc
Q 041497 237 NLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRF 316 (568)
Q Consensus 237 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 316 (568)
.+. ..|.....+..|++|+|++|.+....-..+..+++|.+|.+++.+-+-.. ++..+..+.+
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N-----~Ptsld~l~N----------- 223 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDN-----IPTSLDDLHN----------- 223 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhc-----CCCchhhhhh-----------
Confidence 877 44555667778888888888876554455556666666666654432211 1112333333
Q ss_pred cCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhh-----ccCCCeeECccCccccccCccc
Q 041497 317 GAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI-----LKSLQMLFLHENVLQGTIPSFL 391 (568)
Q Consensus 317 ~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~ 391 (568)
+..+|++.|.+. .+|+.+.++++|+.|++++|+++... ..+|++|+++.|+++ ..|+.+
T Consensus 224 --------------L~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~av 287 (1255)
T KOG0444|consen 224 --------------LRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAV 287 (1255)
T ss_pred --------------hhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHH
Confidence 445555555544 35677777777777777777665332 567888888888887 677788
Q ss_pred cCcccccccccccccccC-CCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCC
Q 041497 392 GNLTMLTQRLLEVNDLLG-NIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNL 470 (568)
Q Consensus 392 ~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L 470 (568)
+.++.|+.|.+.+|+++- .+|+.++.+..|+++...+|.+. .+|+.++.+..+ +.|.|++|++- ..|+++.-++.|
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL-~kL~L~~NrLi-TLPeaIHlL~~l 364 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL-QKLKLDHNRLI-TLPEAIHLLPDL 364 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH-HHhccccccee-echhhhhhcCCc
Confidence 888888888888887753 35667777777777766666554 455566666555 55666666555 555556666666
Q ss_pred cEEecCCCc
Q 041497 471 VSLDISSNM 479 (568)
Q Consensus 471 ~~L~ls~n~ 479 (568)
+.||+..|.
T Consensus 365 ~vLDlreNp 373 (1255)
T KOG0444|consen 365 KVLDLRENP 373 (1255)
T ss_pred ceeeccCCc
Confidence 666666654
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.7e-31 Score=257.38 Aligned_cols=362 Identities=23% Similarity=0.360 Sum_probs=188.3
Q ss_pred CCCcEEeccCCccc-ccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEe
Q 041497 106 SNLVKFEASNNKLA-GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFN 184 (568)
Q Consensus 106 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 184 (568)
+=.+-+|+++|.++ +..|.....|+.++-|.|....+. .+|+.++.+.+|++|.+.+|++.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~----------------- 68 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI----------------- 68 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-----------------
Confidence 33444556666555 344555555555555555555554 45555555555555555555544
Q ss_pred ecccccccCCCCCCCCCCccEEEeeccccc-ccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCccc
Q 041497 185 VGLNQFSGMFPPINNISSLEYIFIHRNIYH-GSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFS 263 (568)
Q Consensus 185 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~ 263 (568)
.....+..+|.|+.+.+..|++. ..+|..+| .+..|+.||++.|++. ..|..+....++-.|+|++|+|.
T Consensus 69 -------~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 69 -------SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred -------hhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc
Confidence 33333444444444444444433 25677777 7777888888888777 45666666777777888888877
Q ss_pred ccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcc-c
Q 041497 264 GKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQI-S 342 (568)
Q Consensus 264 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l-~ 342 (568)
.++...|-+++.|-.|++++|.+...++. .+.+..|+.|++++|.+....-..+... +++..|.+++.+- .
T Consensus 140 tIPn~lfinLtDLLfLDLS~NrLe~LPPQ-------~RRL~~LqtL~Ls~NPL~hfQLrQLPsm-tsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 140 TIPNSLFINLTDLLFLDLSNNRLEMLPPQ-------IRRLSMLQTLKLSNNPLNHFQLRQLPSM-TSLSVLHMSNTQRTL 211 (1255)
T ss_pred cCCchHHHhhHhHhhhccccchhhhcCHH-------HHHHhhhhhhhcCCChhhHHHHhcCccc-hhhhhhhcccccchh
Confidence 66655566677777777777777666553 5556666666666665432111111111 1133333333221 1
Q ss_pred CCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCce
Q 041497 343 GFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLI 422 (568)
Q Consensus 343 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 422 (568)
..+|.++.. +.+|..++++.|.+. .+|+++-.+++|+.|++++|+++. .........+|+
T Consensus 212 ~N~Ptsld~------------------l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lE 271 (1255)
T KOG0444|consen 212 DNIPTSLDD------------------LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLE 271 (1255)
T ss_pred hcCCCchhh------------------hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhh
Confidence 122223322 223444444444444 445555555555555555555542 222223344455
Q ss_pred EEEcccCCCCCCCCCchhHHhhhceEEEccCCccc-ccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeeccc
Q 041497 423 LLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLS-GHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQD 500 (568)
Q Consensus 423 ~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~-~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~ 500 (568)
+|++++|++. .+|+.++.+.++ +.|.+.+|+++ .-+|..++++.+|+++..++|.+. .+|...+ |..|+.|.|++
T Consensus 272 tLNlSrNQLt-~LP~avcKL~kL-~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 272 TLNLSRNQLT-VLPDAVCKLTKL-TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred hhccccchhc-cchHHHhhhHHH-HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccc
Confidence 5555555444 344455555444 44445444433 123444455555555555555544 4444444 55555555555
Q ss_pred ccccccCCccCcCCCCCCEEeCCCCc
Q 041497 501 NSFTGSIPSTLSSLKSITELDLSRNN 526 (568)
Q Consensus 501 n~l~~~~~~~~~~l~~L~~L~l~~n~ 526 (568)
|++. ..|+++.-++.|++||+.+|+
T Consensus 349 NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 349 NRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccee-echhhhhhcCCcceeeccCCc
Confidence 5544 444455555555555555554
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=6.2e-28 Score=220.99 Aligned_cols=286 Identities=21% Similarity=0.240 Sum_probs=225.7
Q ss_pred eeceeCCCC---------CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCC-CcC
Q 041497 25 TGVTCGHRH---------QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTN-NYF 94 (568)
Q Consensus 25 ~~~~c~~~~---------~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~-n~~ 94 (568)
..|+|.++. ...+.|+|..|+|+..++.+|..+++||+||+|+|.|+.+.|++|.++..|.+|-+.+ |+|
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 458887633 5688899999999999999999999999999999999999999999999988887766 899
Q ss_pred CCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCC------
Q 041497 95 SGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGG------ 168 (568)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~------ 168 (568)
+....+.|+++..|+.|.+.-|++.......|..+++|..|.+.+|.+...-...|..+..++.+.+..|++..
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence 96667789999999999999999998888999999999999999999985555588999999999998887421
Q ss_pred ------CCCccccccccCcEEeecccccccCCC--CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCcccc
Q 041497 169 ------RIPSTRSHVRNLISFNVGLNQFSGMFP--PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTG 240 (568)
Q Consensus 169 ------~~~~~l~~l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 240 (568)
..|..++..+......+.+..+....+ ..+.+..+..--...+...+..|...|.++++|++|++++|++++
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 122222333333333333333332222 222222332222334444456777778899999999999999999
Q ss_pred ccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcc
Q 041497 241 SLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRF 316 (568)
Q Consensus 241 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 316 (568)
+-..+|.+...+++|.|.+|++..+....|.++..|+.|++.+|+|+...+. .|....+|..|.+-.|.+
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~------aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG------AFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc------cccccceeeeeehccCcc
Confidence 8889999999999999999999888888899999999999999999998876 366778888888877765
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.9e-22 Score=222.63 Aligned_cols=382 Identities=16% Similarity=0.178 Sum_probs=240.9
Q ss_pred CCCCCCCCCCCCCCCCceeeeceeCCCCCeEEEEeccCCccc--cccCCcccCCCCCceeeccCCc------ccccCCcc
Q 041497 6 QDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIG--GFLSPFVGNLSFLRSINLANNS------FRAEIPHE 77 (568)
Q Consensus 6 ~~~~~~~~~~~~~~~~c~~~~~~c~~~~~~i~~L~l~~~~i~--~~~~~~~~~~~~L~~L~ls~~~------~~~~~~~~ 77 (568)
.+|..+...|+.. ++|.-- .-......++.+.+....+. .....+|..+++|+.|.+..+. +...+|..
T Consensus 507 ~~~~~r~~l~~~~-di~~vl--~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~ 583 (1153)
T PLN03210 507 NEPGEREFLVDAK-DICDVL--EDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG 583 (1153)
T ss_pred CCCCcceeEeCHH-HHHHHH--HhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcc
Confidence 3566666667542 444311 01112345665554433333 2234568899999999997653 23347777
Q ss_pred cCCCC-CCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCC
Q 041497 78 VGNLF-RLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSAL 156 (568)
Q Consensus 78 ~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 156 (568)
+..++ +|+.|.+.++.+. .+|..| ...+|+.|++.+|++. .++.++..+++|+.|+++++...+.+| .+..+++|
T Consensus 584 ~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~L 659 (1153)
T PLN03210 584 FDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNL 659 (1153)
T ss_pred hhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcc
Confidence 77775 6999999999887 778777 5689999999999987 577788889999999999876554555 47889999
Q ss_pred CeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCC
Q 041497 157 QEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGN 236 (568)
Q Consensus 157 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 236 (568)
++|++++|.....+|..+..+++|+.|++++|...+..+...++++|+.|++++|.....+|. ...+|+.|+++++
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n 735 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDET 735 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCC
Confidence 999999987767888889999999999999886555555333678888888887765444443 2456777888777
Q ss_pred ccccccCccCCCCCCCCeEecCCCccccc-------ccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEE
Q 041497 237 NLTGSLQDSLSNATNLQKLDINRNLFSGK-------VSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309 (568)
Q Consensus 237 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 309 (568)
.+.. .|..+ .+++|+.|++.++..... .+..+...++|+.|++++|......+ ..+..+++|+.|
T Consensus 736 ~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP------~si~~L~~L~~L 807 (1153)
T PLN03210 736 AIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP------SSIQNLHKLEHL 807 (1153)
T ss_pred cccc-ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC------hhhhCCCCCCEE
Confidence 7653 34333 456677777766432111 11112223455556655554332211 124455555555
Q ss_pred EeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCc
Q 041497 310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPS 389 (568)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 389 (568)
++++|...+..|... . ..+++.|++++|......|. ..++|++|++++|.++ .+|.
T Consensus 808 ~Ls~C~~L~~LP~~~-~-L~sL~~L~Ls~c~~L~~~p~---------------------~~~nL~~L~Ls~n~i~-~iP~ 863 (1153)
T PLN03210 808 EIENCINLETLPTGI-N-LESLESLDLSGCSRLRTFPD---------------------ISTNISDLNLSRTGIE-EVPW 863 (1153)
T ss_pred ECCCCCCcCeeCCCC-C-ccccCEEECCCCCccccccc---------------------cccccCEeECCCCCCc-cChH
Confidence 555543222222221 1 12244445444432211111 1356778888887776 4666
Q ss_pred cccCcccccccccccccccCCCCCCccCCCCceEEEcccCC
Q 041497 390 FLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNK 430 (568)
Q Consensus 390 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 430 (568)
++..+++|+.|++++|.-...++.....+++|+.+++++|.
T Consensus 864 si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 77778888888887765544566666677778888877775
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=9.2e-21 Score=213.06 Aligned_cols=336 Identities=19% Similarity=0.214 Sum_probs=235.4
Q ss_pred CCCCCCCccEEEeeccc------ccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCC
Q 041497 196 PINNISSLEYIFIHRNI------YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSIN 269 (568)
Q Consensus 196 ~l~~~~~L~~L~l~~~~------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~ 269 (568)
.+..+++|+.|.+..+. ....+|..+..-.++|+.|++.++.+. ..|..+ .+.+|+.|++.++.+.. .+..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cccc
Confidence 46667777777775442 122345544423346888888888776 445555 45788888888888763 3445
Q ss_pred ccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhh
Q 041497 270 FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI 349 (568)
Q Consensus 270 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~ 349 (568)
+..+++|+.++++++......+ .+..+++|+.|++.+|......|..+..+.. |+.|++++|.....+|..+
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip-------~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~-L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIP-------DLSMATNLETLKLSDCSSLVELPSSIQYLNK-LEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCC-------ccccCCcccEEEecCCCCccccchhhhccCC-CCEEeCCCCCCcCccCCcC
Confidence 6778888888888765333222 2556788888888887665556666666544 8888888875544555544
Q ss_pred hhhccccccCccccccchh---hccCCCeeECccCccccccCccccCccccccccccccccc-------CCCCCCccCCC
Q 041497 350 ANLVNLNALGVEFNQLAVT---ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLL-------GNIPPSIGNCK 419 (568)
Q Consensus 350 ~~~~~L~~l~l~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------~~~~~~l~~~~ 419 (568)
.+++|+.|++++|..... ..++|++|++++|.+. .+|..+ .+++|+.|.+..+... ...+.....++
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred -CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 677888888888754322 2568889999988876 344433 4677888877664321 11111223357
Q ss_pred CceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecc
Q 041497 420 NLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQ 499 (568)
Q Consensus 420 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls 499 (568)
+|+.|++++|.....+|..+.++..+ +.|++++|..-+.+|... .+++|+.|++++|.....+|.. .++|+.|+|+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L-~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKL-EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCC-CEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECC
Confidence 89999999998888888888888777 899998875433566554 6889999999998644455543 4789999999
Q ss_pred cccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCc
Q 041497 500 DNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 550 (568)
Q Consensus 500 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 550 (568)
+|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|+
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99998 778889999999999999976444567778888999999999885
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=4.8e-24 Score=195.63 Aligned_cols=271 Identities=19% Similarity=0.215 Sum_probs=187.2
Q ss_pred CCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccC-CcccccCchhhcCcCcCceeec
Q 041497 59 FLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN-NKLAGESPAEIGNLLKFQLLNI 137 (568)
Q Consensus 59 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l 137 (568)
....|.+..|.|+..-+.+|+.+++|+.|||++|.|+.+.|++|.++++|..|-+.+ |+++...-..|.++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567789999999977777999999999999999999999999999999988887777 8898666678899999999999
Q ss_pred ccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEE----------
Q 041497 138 AENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIF---------- 207 (568)
Q Consensus 138 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~---------- 207 (568)
..|.+.....+.|..+++|..|.+.+|.+...-..++..+..++.+.+..|.+.. .++++.+....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic----dCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC----DCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc----ccccchhhhHHhhchhhcccc
Confidence 9999988888899999999999999998874333477888888988888776442 22333322211
Q ss_pred -------eecccccccCCCccc-CCCCCcceEeecCCccccccC-ccCCCCCCCCeEecCCCcccccccCCccCCCCCcE
Q 041497 208 -------IHRNIYHGSLPLDIG-VNLPNLRFFIISGNNLTGSLQ-DSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSW 278 (568)
Q Consensus 208 -------l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 278 (568)
+....+. .++..-+ +....+..=-.+.+....+.| ..|..+++|+.|+|++|+++.+.+.+|.....+++
T Consensus 224 rc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 224 RCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred eecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 1111111 1111111 011111111111222222222 24566777777888888777777777777777777
Q ss_pred EECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcc
Q 041497 279 LNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQI 341 (568)
Q Consensus 279 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l 341 (568)
|.+..|.+...... .|..+..|+.|++++|+++.+.+..|..... +.+|.+-.|.+
T Consensus 303 L~L~~N~l~~v~~~------~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~-l~~l~l~~Np~ 358 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSG------MFQGLSGLKTLSLYDNQITTVAPGAFQTLFS-LSTLNLLSNPF 358 (498)
T ss_pred hhcCcchHHHHHHH------hhhccccceeeeecCCeeEEEecccccccce-eeeeehccCcc
Confidence 77777777665443 3667777777777777777766666666544 67777666654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=7.3e-19 Score=183.62 Aligned_cols=263 Identities=25% Similarity=0.254 Sum_probs=141.7
Q ss_pred CCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCc
Q 041497 226 PNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTK 305 (568)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 305 (568)
..-..|+++++.++ .+|..+. ++|+.|++.+|+++.++. ..++|++|++++|+++.++. ..++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~----------lp~s 263 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----------LPPG 263 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC----------cccc
Confidence 34567888888887 4555443 478889999988875432 25788888888888886542 2367
Q ss_pred ccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchh--hccCCCeeECccCcc
Q 041497 306 LEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT--ILKSLQMLFLHENVL 383 (568)
Q Consensus 306 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~L~~L~l~~~~~ 383 (568)
|+.|++.+|.+..+.. .+.+++.|++++|.++.. |.. .++|+.|++++|++... ...+|+.|++++|.+
T Consensus 264 L~~L~Ls~N~L~~Lp~-----lp~~L~~L~Ls~N~Lt~L-P~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L 334 (788)
T PRK15387 264 LLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQL 334 (788)
T ss_pred cceeeccCCchhhhhh-----chhhcCEEECcCCccccc-ccc---ccccceeECCCCccccCCCCcccccccccccCcc
Confidence 8888888888765322 234577888888877743 322 24555666666555432 133455555555555
Q ss_pred ccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchh
Q 041497 384 QGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAE 463 (568)
Q Consensus 384 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~ 463 (568)
+. ++. + ..+|+.|++++|+++. +|.. ..+|+.|++++|.+.. +|... .. ++.|++++|.+++ .|..
T Consensus 335 ~~-LP~-l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~---~~-L~~LdLs~N~Lt~-LP~l 400 (788)
T PRK15387 335 TS-LPT-L--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP---SG-LKELIVSGNRLTS-LPVL 400 (788)
T ss_pred cc-ccc-c--ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc---cc-cceEEecCCcccC-CCCc
Confidence 42 221 1 1245555555555543 2211 2344455555555442 22211 11 2445555555542 2211
Q ss_pred hhcCCCCcEEecCCCcccccCCCcccccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccc
Q 041497 464 VGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYL 535 (568)
Q Consensus 464 l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 535 (568)
.++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+.+++.|+.|++++|++++..+..+
T Consensus 401 ---~s~L~~LdLS~N~Ls-sIP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 ---PSELKELMVSGNRLT-SLPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ---ccCCCEEEccCCcCC-CCCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 234555555555554 23332 234455555555554 444445555555555555555554444333
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1.3e-18 Score=181.68 Aligned_cols=254 Identities=22% Similarity=0.223 Sum_probs=103.5
Q ss_pred cEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCC
Q 041497 204 EYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGK 283 (568)
Q Consensus 204 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 283 (568)
..|+++.+.++ .+|..+. ++|+.|++.+|.++. +|. .+++|++|++++|+++.++. ..++|+.|++.+
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~ 271 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFS 271 (788)
T ss_pred cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccC----cccccceeeccC
Confidence 34444444443 3443332 244455555554442 221 13445555555555443221 123445555555
Q ss_pred CCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCcccc
Q 041497 284 NNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFN 363 (568)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~ 363 (568)
|.+..++. ...+|+.|++++|+++.+.. .+.+|+.|++++|.+.+. |.. ...|+.|++++|
T Consensus 272 N~L~~Lp~----------lp~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N 332 (788)
T PRK15387 272 NPLTHLPA----------LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNN 332 (788)
T ss_pred Cchhhhhh----------chhhcCEEECcCCccccccc-----cccccceeECCCCccccC-CCC---cccccccccccC
Confidence 54443221 11334445555554443221 112345555555544432 211 123444444444
Q ss_pred ccchhh--ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhH
Q 041497 364 QLAVTI--LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPR 441 (568)
Q Consensus 364 ~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 441 (568)
.+.... .++|+.|++++|.++. +|.. ..+|+.|++++|+++. +|.. ..+|+.|++++|.+.. +|...
T Consensus 333 ~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~-- 401 (788)
T PRK15387 333 QLTSLPTLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP-- 401 (788)
T ss_pred ccccccccccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc--
Confidence 443211 2345555555555442 2211 1234444455544442 2211 1234555555554442 22111
Q ss_pred HhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeeccccccccc
Q 041497 442 IITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGS 506 (568)
Q Consensus 442 ~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~ 506 (568)
.. ++.|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+. +++|+.|+|++|++++.
T Consensus 402 -s~-L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 402 -SE-LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred -cC-CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 11 2444555555442 2221 123444555555554 3444443 45555555555555443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=3.9e-16 Score=164.44 Aligned_cols=230 Identities=22% Similarity=0.370 Sum_probs=134.2
Q ss_pred ceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCC
Q 041497 27 VTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCS 106 (568)
Q Consensus 27 ~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 106 (568)
..|.. ...+.|+++++.+...+ ..+. ++++.|++++|.++ .+|..+. .+|++|++++|.++ .+|..+. +
T Consensus 173 ~~Cl~--~~~~~L~L~~~~LtsLP-~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~ 241 (754)
T PRK15370 173 RDCLK--NNKTELRLKILGLTTIP-ACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--D 241 (754)
T ss_pred Hhhcc--cCceEEEeCCCCcCcCC-cccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--c
Confidence 35643 45677888887777543 2232 46888888888887 4665543 57888888888887 5565443 4
Q ss_pred CCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeec
Q 041497 107 NLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVG 186 (568)
Q Consensus 107 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 186 (568)
+|+.|++++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.+. .+|..+. +.|+.|+++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ 312 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence 6888888888877 5565553 47888888888777 4565543 47888888888776 3444332 356666777
Q ss_pred ccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccc
Q 041497 187 LNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKV 266 (568)
Q Consensus 187 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~ 266 (568)
+|.+......+ .++|+.|++++|.++ .+|..+ .++|+.|++++|.+.. +|..+ .++|+.|++++|.+..++
T Consensus 313 ~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 313 SNSLTALPETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNLP 383 (754)
T ss_pred CCccccCCccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCCC
Confidence 66665432211 145555555555554 233322 1355555555555542 23222 234555555555554322
Q ss_pred cCCccCCCCCcEEECCCCCCCC
Q 041497 267 SINFGGLQNLSWLNLGKNNLGT 288 (568)
Q Consensus 267 ~~~~~~~~~L~~L~l~~~~~~~ 288 (568)
+ .+. +.|+.|++++|++..
T Consensus 384 ~-~l~--~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 384 E-NLP--AALQIMQASRNNLVR 402 (754)
T ss_pred H-hHH--HHHHHHhhccCCccc
Confidence 2 111 234555555555543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=4.3e-16 Score=164.14 Aligned_cols=257 Identities=19% Similarity=0.325 Sum_probs=156.1
Q ss_pred CCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEe
Q 041497 82 FRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINV 161 (568)
Q Consensus 82 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 161 (568)
.+...|+++++.++ .+|..+. ++|+.|++++|+++ .+|..+. .+|++|++++|.++ .+|..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 34567777777776 4555442 46777777777776 4454443 47777777777776 3454443 46777777
Q ss_pred ccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccc
Q 041497 162 NGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGS 241 (568)
Q Consensus 162 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 241 (568)
++|.+. .+|..+. .+|+.|++++|.+......+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.+..
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCcccc-
Confidence 777766 5555443 367777777776664322232 46777777777665 344332 2357777777777764
Q ss_pred cCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCc
Q 041497 242 LQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLP 321 (568)
Q Consensus 242 ~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 321 (568)
.|..+ .++|+.|++++|.++++ |..+ .++|+.|++++|++..++.. + .++|+.|++++|.++.+.+
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~~LP~~-------l--p~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQITVLPET-------L--PPTITTLDVSRNALTNLPE 384 (754)
T ss_pred CCccc--cccceeccccCCccccC-Chhh--cCcccEEECCCCCCCcCChh-------h--cCCcCEEECCCCcCCCCCH
Confidence 33322 35677888888877653 3323 25778888888877654321 1 2567888888887776433
Q ss_pred hhhhcccccceEEEcccCcccCCCChhhhh----hccccccCccccccchhhccCCCee
Q 041497 322 FSLANLSTTMTGIAFGNNQISGFIPDGIAN----LVNLNALGVEFNQLAVTILKSLQML 376 (568)
Q Consensus 322 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~----~~~L~~l~l~~~~~~~~~~~~L~~L 376 (568)
.+. ..++.|++++|.+.. +|..+.. .+.+..+++.+|.+....+++|+.+
T Consensus 385 -~l~---~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~~L 438 (754)
T PRK15370 385 -NLP---AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRL 438 (754)
T ss_pred -hHH---HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCccHHHHHHHHHh
Confidence 222 237777888877763 3443333 3455666666666665555555555
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=3e-18 Score=167.94 Aligned_cols=281 Identities=21% Similarity=0.275 Sum_probs=147.6
Q ss_pred EEeccCCccccc-cCCcccCCCCCceeeccCCccccc----CCcccCCCCCCcEEeCCCCcCCC------CCCcccccCC
Q 041497 38 GLDLRHQSIGGF-LSPFVGNLSFLRSINLANNSFRAE----IPHEVGNLFRLQNLTLTNNYFSG------KIPTNLSRCS 106 (568)
Q Consensus 38 ~L~l~~~~i~~~-~~~~~~~~~~L~~L~ls~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~l~ 106 (568)
.|+|.++.+.+. ....+..+.+|++|+++++.++.. ++..+...+.+++++++++.+.. ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 356666666532 233455667788888888776432 44455667778888887776652 1123345566
Q ss_pred CCcEEeccCCcccccCchhhcCcCc---CceeecccccCCC----CCCcccCCC-CCCCeEEeccCCCCCC----CCccc
Q 041497 107 NLVKFEASNNKLAGESPAEIGNLLK---FQLLNIAENHLRG----QLPASIGNL-SALQEINVNGNRLGGR----IPSTR 174 (568)
Q Consensus 107 ~L~~L~l~~n~~~~~~~~~~~~l~~---L~~L~l~~~~l~~----~~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~l 174 (568)
+|+.|++++|.+....+..+..+.+ |++|++++|.+.+ .+...+..+ ++|++|++++|.+.+. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 7777777777665444444444444 7777776666542 112233444 6666666666665521 12223
Q ss_pred cccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccc----cCccCCCCC
Q 041497 175 SHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGS----LQDSLSNAT 250 (568)
Q Consensus 175 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~ 250 (568)
..+++|+.|++++|.+.+... ..++..+. ..++|+.|++++|.+.+. ....+..++
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~-------------------~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGI-------------------RALAEGLK-ANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred HhCCCcCEEECcCCCCchHHH-------------------HHHHHHHH-hCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 344455555555554442100 00111111 234566666666554432 122344556
Q ss_pred CCCeEecCCCcccccccCCcc-----CCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhh
Q 041497 251 NLQKLDINRNLFSGKVSINFG-----GLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLA 325 (568)
Q Consensus 251 ~L~~L~L~~n~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 325 (568)
+|+.|++++|.+.+.....+. ..+.|+.|++.+|.++.... ..+...+..+++|+.+++++|.+.......++
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~--~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA--KDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH--HHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 677777777666542222211 23567777777776653221 13334455557777777777777654322222
Q ss_pred ----cccccceEEEcccCc
Q 041497 326 ----NLSTTMTGIAFGNNQ 340 (568)
Q Consensus 326 ----~~~~~l~~L~l~~~~ 340 (568)
.....++.+++.++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 300 ESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHhhcCCchhhcccCCCC
Confidence 221346666666553
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=4.1e-18 Score=138.98 Aligned_cols=162 Identities=22% Similarity=0.393 Sum_probs=137.2
Q ss_pred CCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEE
Q 041497 32 RHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKF 111 (568)
Q Consensus 32 ~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 111 (568)
...+|+.|.||+|.+..+ ++.+..+.+|++|++++|.+. .+|..++.+++|+.|+++-|++. ..|.+|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 457888899999988864 456889999999999999887 68888999999999999988887 889999999999999
Q ss_pred eccCCccc-ccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccc
Q 041497 112 EASNNKLA-GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF 190 (568)
Q Consensus 112 ~l~~n~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (568)
|+++|.+. ..+|..|..++-|+.|.+++|... .+|..++++.+|+.|.+..|.+. ..|..++.+++|++|++.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 99988874 467888888899999999998887 78888999999999999998887 7888888999999999988888
Q ss_pred ccCCCCCC
Q 041497 191 SGMFPPIN 198 (568)
Q Consensus 191 ~~~~~~l~ 198 (568)
.-..|.++
T Consensus 186 ~vlppel~ 193 (264)
T KOG0617|consen 186 TVLPPELA 193 (264)
T ss_pred eecChhhh
Confidence 76655433
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.64 E-value=5.3e-18 Score=166.15 Aligned_cols=280 Identities=21% Similarity=0.242 Sum_probs=157.6
Q ss_pred eeccCCcccc-cCCcccCCCCCCcEEeCCCCcCCCC----CCcccccCCCCcEEeccCCcccc------cCchhhcCcCc
Q 041497 63 INLANNSFRA-EIPHEVGNLFRLQNLTLTNNYFSGK----IPTNLSRCSNLVKFEASNNKLAG------ESPAEIGNLLK 131 (568)
Q Consensus 63 L~ls~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~l~~ 131 (568)
|++.++.+++ .....+..+..|+.|+++++.++.. ++..+...+.+++++++++.+.. .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 4555555542 2333444555667777776665421 23334445556666666655431 12233444555
Q ss_pred CceeecccccCCCCCCcccCCCCC---CCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCC-CCccEEE
Q 041497 132 FQLLNIAENHLRGQLPASIGNLSA---LQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNI-SSLEYIF 207 (568)
Q Consensus 132 L~~L~l~~~~l~~~~~~~~~~l~~---L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~-~~L~~L~ 207 (568)
|++|++++|.+.+..+..+..+.. |++|++++|.+.......+ ...+..+ ++|+.|+
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l-------------------~~~l~~~~~~L~~L~ 143 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL-------------------AKGLKDLPPALEKLV 143 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH-------------------HHHHHhCCCCceEEE
Confidence 555555555554333333332222 5555555554432100000 0022233 5566666
Q ss_pred eecccccccCC---CcccCCCCCcceEeecCCccccc----cCccCCCCCCCCeEecCCCccccccc----CCccCCCCC
Q 041497 208 IHRNIYHGSLP---LDIGVNLPNLRFFIISGNNLTGS----LQDSLSNATNLQKLDINRNLFSGKVS----INFGGLQNL 276 (568)
Q Consensus 208 l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~n~~~~~~~----~~~~~~~~L 276 (568)
+++|.+++... ...+..++.|++|++++|.+.+. .+..+...++|++|++++|.+.+... ..+..+++|
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L 223 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL 223 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence 66655542111 11122567899999999887742 22334556799999999999864432 335678899
Q ss_pred cEEECCCCCCCCcCCCCchhhhcc-cCCCcccEEEeccCcccCcCchh----hhcccccceEEEcccCcccCCC----Ch
Q 041497 277 SWLNLGKNNLGTRTANDLDFITLL-TNCTKLEVLVLDSNRFGAVLPFS----LANLSTTMTGIAFGNNQISGFI----PD 347 (568)
Q Consensus 277 ~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~l~~L~l~~~~l~~~~----~~ 347 (568)
++|++++|.+...... .+...+ ...+.|+.|++++|.+++..... +... .+++.+++++|.+.+.. ..
T Consensus 224 ~~L~ls~n~l~~~~~~--~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 224 EVLNLGDNNLTDAGAA--ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CEEecCCCcCchHHHH--HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCcHHHHHHHHH
Confidence 9999999988753221 111111 13578999999999987433222 2223 45999999999998653 33
Q ss_pred hhhhh-ccccccCccccc
Q 041497 348 GIANL-VNLNALGVEFNQ 364 (568)
Q Consensus 348 ~~~~~-~~L~~l~l~~~~ 364 (568)
.+... ..++.+++..+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 301 SLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHhhcCCchhhcccCCCC
Confidence 44444 678888888765
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=2.9e-17 Score=134.07 Aligned_cols=158 Identities=27% Similarity=0.455 Sum_probs=90.5
Q ss_pred ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCc
Q 041497 54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ 133 (568)
Q Consensus 54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 133 (568)
+.++.+++.|.+|+|+++ .+|..++.+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|.+|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 345555666666666665 44555666666666666666665 55555555666666666555554 4555555555555
Q ss_pred eeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccc
Q 041497 134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIY 213 (568)
Q Consensus 134 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 213 (568)
.|++.+|++.. ...|..|..++.|+.|.++.|.+.-..++++++++|+.|.+..|.+
T Consensus 106 vldltynnl~e-----------------------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 106 VLDLTYNNLNE-----------------------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hhhcccccccc-----------------------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch
Confidence 55555555442 1344445555555555555555544444555555555555555554
Q ss_pred cccCCCcccCCCCCcceEeecCCccc
Q 041497 214 HGSLPLDIGVNLPNLRFFIISGNNLT 239 (568)
Q Consensus 214 ~~~~~~~~~~~~~~L~~L~l~~~~~~ 239 (568)
. .+|..+. .+..|++|++++|.++
T Consensus 163 l-~lpkeig-~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 163 L-SLPKEIG-DLTRLRELHIQGNRLT 186 (264)
T ss_pred h-hCcHHHH-HHHHHHHHhcccceee
Confidence 4 4565555 6667777777777776
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.31 E-value=6.5e-12 Score=132.26 Aligned_cols=136 Identities=35% Similarity=0.633 Sum_probs=100.9
Q ss_pred cccCCCCCCCCCCCCCCCCCc-----eeeeceeCCC----CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccc
Q 041497 2 KSQLQDPLGVTSSWNNSINLC-----QWTGVTCGHR----HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRA 72 (568)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~c-----~~~~~~c~~~----~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~ 72 (568)
|+++.+|.. ..|.. +.| .|.|+.|... ...++.|+|+++.+.+..+..+..+++|++|++++|.+.+
T Consensus 381 k~~~~~~~~--~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g 456 (623)
T PLN03150 381 KSSLGLPLR--FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG 456 (623)
T ss_pred HHhcCCccc--CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC
Confidence 455555432 48954 455 6999999531 1358888888888888888888888888888888888887
Q ss_pred cCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCc-CcCceeeccccc
Q 041497 73 EIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNL-LKFQLLNIAENH 141 (568)
Q Consensus 73 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~~~ 141 (568)
.+|..+..+++|++|++++|.+++.+|+.++.+++|++|++++|++.+.+|..+... .++..+++.+|.
T Consensus 457 ~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 457 NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 788888888888888888888887788888888888888888888877777776543 345556666554
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=1.5e-12 Score=119.03 Aligned_cols=244 Identities=21% Similarity=0.254 Sum_probs=143.9
Q ss_pred CCeEEEEeccCCccccc----cCCcccCCCCCceeeccCC---cccccCCc-------ccCCCCCCcEEeCCCCcCCCCC
Q 041497 33 HQRVIGLDLRHQSIGGF----LSPFVGNLSFLRSINLANN---SFRAEIPH-------EVGNLFRLQNLTLTNNYFSGKI 98 (568)
Q Consensus 33 ~~~i~~L~l~~~~i~~~----~~~~~~~~~~L~~L~ls~~---~~~~~~~~-------~~~~l~~L~~L~l~~n~~~~~~ 98 (568)
...++.|+|++|.+... +...+.+.++|+..+++.- +....+|. ++...++|++|+||.|-+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 46788899999887643 3345667788888888864 22223443 3456778888888888876555
Q ss_pred Cccc----ccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCC----C
Q 041497 99 PTNL----SRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGR----I 170 (568)
Q Consensus 99 ~~~~----~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~----~ 170 (568)
+..| +.++.|++|.+.+|.+.-.....++ ..|..|. .+ ...+.-+.|+++...+|.+... +
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA--VN-------KKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH--HH-------hccCCCcceEEEEeeccccccccHHHH
Confidence 5443 4677888888887776421111111 0111111 00 1123345666666666665431 1
Q ss_pred CccccccccCcEEeecccccccCCC-----CCCCCCCccEEEeecccccccCC---CcccCCCCCcceEeecCCcccccc
Q 041497 171 PSTRSHVRNLISFNVGLNQFSGMFP-----PINNISSLEYIFIHRNIYHGSLP---LDIGVNLPNLRFFIISGNNLTGSL 242 (568)
Q Consensus 171 ~~~l~~l~~L~~L~l~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~ 242 (568)
...+...+.|+.+.+..|.+....- .+..+++|++|++..|.++.... ......++.|+++++++|.+....
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence 2234455666666666666542211 45666777777777766552211 122235667777777777666543
Q ss_pred CccC-----CCCCCCCeEecCCCcccccccC----CccCCCCCcEEECCCCCCC
Q 041497 243 QDSL-----SNATNLQKLDINRNLFSGKVSI----NFGGLQNLSWLNLGKNNLG 287 (568)
Q Consensus 243 ~~~l-----~~~~~L~~L~L~~n~~~~~~~~----~~~~~~~L~~L~l~~~~~~ 287 (568)
..++ ...|+|+.+.+.+|.++..... .+...+.|..|++++|.+.
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 3222 2367888888888887643322 2355788888999988884
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.1e-12 Score=121.42 Aligned_cols=144 Identities=19% Similarity=0.221 Sum_probs=73.5
Q ss_pred cccccCcEEeecccccccCCC--CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCC
Q 041497 175 SHVRNLISFNVGLNQFSGMFP--PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNL 252 (568)
Q Consensus 175 ~~l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 252 (568)
.++|+|+.|+++.|.+..... .-..+++|+.|.++.|.++..--..+...+|+|+.|++++|...........-+..|
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 344444444444444432222 122345555666665555432222222256666666666664222222233334566
Q ss_pred CeEecCCCccccccc-CCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccC
Q 041497 253 QKLDINRNLFSGKVS-INFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGA 318 (568)
Q Consensus 253 ~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 318 (568)
++|+|++|.+.+... ...+.++.|..|+++.+.+.++...+.+........++|+.|++..|++.+
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 777777776553332 224566667777777666666554433333334556666666666666644
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=4.9e-12 Score=115.78 Aligned_cols=185 Identities=20% Similarity=0.154 Sum_probs=135.2
Q ss_pred ccCCCeeECccCccccccCc----cccCcccccccccccccccCCCC-------------CCccCCCCceEEEcccCCCC
Q 041497 370 LKSLQMLFLHENVLQGTIPS----FLGNLTMLTQRLLEVNDLLGNIP-------------PSIGNCKNLILLTTRKNKPS 432 (568)
Q Consensus 370 ~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~~ 432 (568)
++.|+++++++|.+....+. .+.+++.|++|.+.+|.+.-... .....-+.|+++...+|++.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 67899999999987644333 35668999999999998743211 12345678999999999987
Q ss_pred CCCCCchh---HHhhhceEEEccCCcccccC----chhhhcCCCCcEEecCCCcccccCCC----ccc-ccccceeeccc
Q 041497 433 GTMPRQLP---RIITLSVLLNLSDNLLSGHF----PAEVGKLKNLVSLDISSNMFSGEIPT----TLG-CTSLEYLCMQD 500 (568)
Q Consensus 433 ~~~~~~~~---~~~~l~~~l~Ls~n~l~~~~----~~~l~~l~~L~~L~ls~n~l~~~~~~----~~~-~~~L~~L~Ls~ 500 (568)
......+. +....++.+.+..|.|.... ..+|..+++|++|||..|-++..... .++ +++|++|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 65433322 22233478889999886432 35678999999999999988754333 333 78999999999
Q ss_pred ccccccCCccC-----cCCCCCCEEeCCCCcccc----CcCccccccccCCeeecccCccccc
Q 041497 501 NSFTGSIPSTL-----SSLKSITELDLSRNNLSG----HIPQYLENLSFLSFLNLSYNHFESK 554 (568)
Q Consensus 501 n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~i~~~ 554 (568)
|.+.......| ...|.|+.|.+.+|.++. .+...+...+.|+.|+|++|++...
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~ 313 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEK 313 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccccc
Confidence 99887655443 247899999999999975 2334556679999999999999544
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=4.8e-12 Score=122.81 Aligned_cols=168 Identities=32% Similarity=0.460 Sum_probs=85.8
Q ss_pred eECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCc
Q 041497 376 LFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNL 455 (568)
Q Consensus 376 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~ 455 (568)
.+++.|.+. +++..++.|..|+.+.++.|.+. .+|.++.++..|++++++.|++. ..|..++.+ .+ +.+-+++|+
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pL-kvli~sNNk 154 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PL-KVLIVSNNK 154 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cc-eeEEEecCc
Confidence 344444444 44455555555555555555543 34445555555555555555544 233333322 12 445555555
Q ss_pred ccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCcc
Q 041497 456 LSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY 534 (568)
Q Consensus 456 l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 534 (568)
++ .+|+.++..++|..||.+.|.+. .+|...+ +.+|+.|.++.|++. ..|..+..+ .|..||+++|++. .+|-.
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchh
Confidence 55 44555555555555566655555 2333333 555555555555555 333334443 2555555555555 34555
Q ss_pred ccccccCCeeecccCcccc
Q 041497 535 LENLSFLSFLNLSYNHFES 553 (568)
Q Consensus 535 ~~~l~~L~~L~l~~n~i~~ 553 (568)
|.+++.|++|-|.+||+.+
T Consensus 230 fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhhheeeeeccCCCCC
Confidence 5555555555555555554
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=2.1e-11 Score=109.11 Aligned_cols=137 Identities=24% Similarity=0.226 Sum_probs=107.2
Q ss_pred CccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccccccc
Q 041497 414 SIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSL 493 (568)
Q Consensus 414 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L 493 (568)
.+..++.|+.+|+++|.|.. +.+...-.+++ +.|++|+|+|..+ +.++.+++|..||+|+|.++...-....+-++
T Consensus 279 ~~dTWq~LtelDLS~N~I~~-iDESvKL~Pki-r~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQ-IDESVKLAPKL-RRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNI 354 (490)
T ss_pred ecchHhhhhhccccccchhh-hhhhhhhccce-eEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCE
Confidence 44557789999999998763 22333334444 8999999999843 34889999999999999987433333338999
Q ss_pred ceeecccccccccCCccCcCCCCCCEEeCCCCccccCcC-ccccccccCCeeecccCcccccCC
Q 041497 494 EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFESKSL 556 (568)
Q Consensus 494 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~ 556 (568)
+.|.|++|.+... .++.++=+|..||+++|+|..... ..++++|.|+++.+.+||+.....
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 9999999999744 578888899999999999976433 578999999999999999987654
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=4.4e-12 Score=123.06 Aligned_cols=175 Identities=27% Similarity=0.443 Sum_probs=90.0
Q ss_pred CCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCcee
Q 041497 56 NLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLL 135 (568)
Q Consensus 56 ~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 135 (568)
.+.-....|++.|++. .+|..++.+..|+.+.++.|.+. .+|..+..+..|.+|+++.|+++ .+|..+..+ -|+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeE
Confidence 3334444555555554 45555555555665556555555 55555555555666666655555 344444433 24555
Q ss_pred ecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccc
Q 041497 136 NIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHG 215 (568)
Q Consensus 136 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 215 (568)
-+++|+++ .+|..++..++|..|+.+.|.+. ..|..++.+.+|+.|.+..|++..
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~----------------------- 203 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED----------------------- 203 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-----------------------
Confidence 55555555 44555555555555555555554 444445555555555555444443
Q ss_pred cCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCccc
Q 041497 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFS 263 (568)
Q Consensus 216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~ 263 (568)
+|...+ .++ |..||++.|++. .+|..|..++.|++|-|.+|.+.
T Consensus 204 -lp~El~-~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 204 -LPEELC-SLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -CCHHHh-CCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 333332 222 445555555555 34444555555555555555554
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.06 E-value=4e-10 Score=118.84 Aligned_cols=112 Identities=37% Similarity=0.500 Sum_probs=102.9
Q ss_pred eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497 447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525 (568)
Q Consensus 447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 525 (568)
+.|+|++|.+.+..|..+..+++|+.|+|++|.+++.+|..++ +++|+.|+|++|++++.+|..+.++++|+.|++++|
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 7889999999999999999999999999999999999998887 999999999999999999999999999999999999
Q ss_pred ccccCcCcccccc-ccCCeeecccCcccccCCCC
Q 041497 526 NLSGHIPQYLENL-SFLSFLNLSYNHFESKSLFV 558 (568)
Q Consensus 526 ~l~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~ 558 (568)
.+++.+|..+... .++..+++.+|+..|.+|..
T Consensus 501 ~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l 534 (623)
T PLN03150 501 SLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL 534 (623)
T ss_pred cccccCChHHhhccccCceEEecCCccccCCCCC
Confidence 9999999888764 46788999999988887753
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3e-11 Score=113.79 Aligned_cols=209 Identities=20% Similarity=0.220 Sum_probs=138.2
Q ss_pred CCCCCCeEEeccCCCCCCCC-ccccccccCcEEeecccccccCCC---CCCCCCCccEEEeecccccccCCCcccCCCCC
Q 041497 152 NLSALQEINVNGNRLGGRIP-STRSHVRNLISFNVGLNQFSGMFP---PINNISSLEYIFIHRNIYHGSLPLDIGVNLPN 227 (568)
Q Consensus 152 ~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 227 (568)
++.+|+++.+.++.+..... .....++.++.||++.|-+..+.+ -...+|+|+.|+++.|.+...........++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45566666666665542111 355677888888888887777666 45678999999999998775555555557889
Q ss_pred cceEeecCCccccccCc-cCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcc
Q 041497 228 LRFFIISGNNLTGSLQD-SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKL 306 (568)
Q Consensus 228 L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L 306 (568)
|+.|.++.|+++..... .+..+|+|+.|+|+.|...........-+..|++|+|++|++.+.+.. .....+|.|
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-----~~~~~l~~L 273 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-----YKVGTLPGL 273 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-----cccccccch
Confidence 99999999998853222 335689999999999964334444455677899999999998876532 235678889
Q ss_pred cEEEeccCcccCcCchhh-----hcccccceEEEcccCcccCCC-ChhhhhhccccccCcccccc
Q 041497 307 EVLVLDSNRFGAVLPFSL-----ANLSTTMTGIAFGNNQISGFI-PDGIANLVNLNALGVEFNQL 365 (568)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~-----~~~~~~l~~L~l~~~~l~~~~-~~~~~~~~~L~~l~l~~~~~ 365 (568)
+.|.++.+.+..+-.... .....+++.|++..|++.+.. -..+..+++|+.+.+..|.+
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 999998888766422221 233445777777777764321 12333344444444444444
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=5.3e-11 Score=106.61 Aligned_cols=225 Identities=17% Similarity=0.170 Sum_probs=137.9
Q ss_pred ccCCCCcEEeccCCcc--------cccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccc
Q 041497 103 SRCSNLVKFEASNNKL--------AGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTR 174 (568)
Q Consensus 103 ~~l~~L~~L~l~~n~~--------~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 174 (568)
..+..|.+|.++..+. ...+|..+....+|+.+.++++.-.. +......-|.|+++.+....+.. . ..+
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~-~-~~l 255 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQD-V-PSL 255 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccc-c-ccc
Confidence 3467788887776432 12334445556778888888776542 22223334778888877655431 1 111
Q ss_pred cccccCcEEeeccccc---ccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCC
Q 041497 175 SHVRNLISFNVGLNQF---SGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNAT 250 (568)
Q Consensus 175 ~~l~~L~~L~l~~~~~---~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 250 (568)
--... ..|.....- .+... ....++.|+.+++++|.++ .+.+.+- -.|.++.|++++|++..+ ..+..++
T Consensus 256 ~pe~~--~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~ 329 (490)
T KOG1259|consen 256 LPETI--LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELP 329 (490)
T ss_pred cchhh--hcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcc
Confidence 11111 111111111 11111 3445677888888888876 5555543 578889999999988755 3477888
Q ss_pred CCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhccccc
Q 041497 251 NLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTT 330 (568)
Q Consensus 251 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 330 (568)
+|+.|+|++|.++.. ..+-..+-++++|.+..|.+.+... ++.+.+|..||+.+|++..+....-.+..++
T Consensus 330 ~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~LSG--------L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 330 QLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETLSG--------LRKLYSLVNLDLSSNQIEELDEVNHIGNLPC 400 (490)
T ss_pred cceEeecccchhHhh-hhhHhhhcCEeeeehhhhhHhhhhh--------hHhhhhheeccccccchhhHHHhcccccccH
Confidence 899999999987633 3334456688888888888876543 6778888899998888876544333333344
Q ss_pred ceEEEcccCcccCCC
Q 041497 331 MTGIAFGNNQISGFI 345 (568)
Q Consensus 331 l~~L~l~~~~l~~~~ 345 (568)
++.+.+.+|.+.+..
T Consensus 401 LE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 401 LETLRLTGNPLAGSV 415 (490)
T ss_pred HHHHhhcCCCccccc
Confidence 777777777766543
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=2.5e-10 Score=122.86 Aligned_cols=205 Identities=23% Similarity=0.271 Sum_probs=121.7
Q ss_pred ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCc--CCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCc
Q 041497 54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNY--FSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLK 131 (568)
Q Consensus 54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 131 (568)
..+....|...+.+|.+. .++.+. ..++|++|-+..|. +.....+.|..++.|++||+++|.-.+.+|..++.+.+
T Consensus 519 ~~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 344456677777777654 333333 34467777777774 44333444677888888888877766678888888888
Q ss_pred CceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC---CCCCCCCccEEEe
Q 041497 132 FQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP---PINNISSLEYIFI 208 (568)
Q Consensus 132 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~l~~~~~L~~L~l 208 (568)
||+|+++++.+. .+|.++++++.|.+|++..+......+.....+++|+.|.+.......... .+..+.+|+.+..
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 888888888877 678888888888888888776554556666678888888877665332222 3344445555444
Q ss_pred ecccccccCCCcccCCCCCcc----eEeecCCccccccCccCCCCCCCCeEecCCCccccc
Q 041497 209 HRNIYHGSLPLDIGVNLPNLR----FFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGK 265 (568)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~ 265 (568)
..... .+..... ....|. .+.+.++... ..+..+..+.+|+.|.+.++.+.+.
T Consensus 676 ~~~s~--~~~e~l~-~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 676 TISSV--LLLEDLL-GMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred ecchh--HhHhhhh-hhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchh
Confidence 32221 0001110 112221 2222222221 2334556677777777777776543
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=2.6e-10 Score=98.10 Aligned_cols=128 Identities=27% Similarity=0.269 Sum_probs=45.2
Q ss_pred CccCCCCceEEEcccCCCCCCCCCchh-HHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcc-c-c
Q 041497 414 SIGNCKNLILLTTRKNKPSGTMPRQLP-RIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL-G-C 490 (568)
Q Consensus 414 ~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~-~ 490 (568)
.+.++..+++|++.+|.|... +.+. .+.++ +.|++++|.|+.. +.+..++.|++|++++|+++ .+...+ . +
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L-~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~l 87 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTI--ENLGATLDKL-EVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNL 87 (175)
T ss_dssp ------------------------S--TT-TT---EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-
T ss_pred ccccccccccccccccccccc--cchhhhhcCC-CEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhC
Confidence 345566788888888887643 2333 23444 7788888888743 35777888888888888887 343333 2 7
Q ss_pred cccceeecccccccccC-CccCcCCCCCCEEeCCCCccccCcC---ccccccccCCeeecc
Q 041497 491 TSLEYLCMQDNSFTGSI-PSTLSSLKSITELDLSRNNLSGHIP---QYLENLSFLSFLNLS 547 (568)
Q Consensus 491 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~ 547 (568)
++|++|++++|+|.... ...++.+++|+.|++.+|++....- ..+..+|+|+.||-.
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 88888888888876422 2456678888888888888864321 245677888887643
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=4.8e-10 Score=113.04 Aligned_cols=194 Identities=30% Similarity=0.479 Sum_probs=104.5
Q ss_pred eeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCC-CCcEEeccCCcccccCchhhcCcCcCceeecccc
Q 041497 62 SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCS-NLVKFEASNNKLAGESPAEIGNLLKFQLLNIAEN 140 (568)
Q Consensus 62 ~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 140 (568)
.++...+.+.. .+..+..++.++.|++.++.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 35555555431 2233445566777777777766 4444455553 6777777777665 34455666677777777777
Q ss_pred cCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCc
Q 041497 141 HLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLD 220 (568)
Q Consensus 141 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 220 (568)
++. .++...+..+.|+.|++++|.+. .+|........|+.+.+++|........+..++.+..+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~------------- 238 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE------------- 238 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc-------------
Confidence 666 34444445666677777776665 455444445556666666664333333344444444444
Q ss_pred ccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCC
Q 041497 221 IGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGT 288 (568)
Q Consensus 221 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 288 (568)
+.++++.. .+..+..+++++.|++++|.++.+.. ++...+++.|+++++.+..
T Consensus 239 ------------l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 239 ------------LSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ------------cCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccc
Confidence 44444331 12334444455555555555543333 4455555555555554443
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=2.8e-10 Score=97.87 Aligned_cols=109 Identities=26% Similarity=0.386 Sum_probs=32.8
Q ss_pred ccCCCCCceeeccCCcccccCCcccC-CCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhh-cCcCc
Q 041497 54 VGNLSFLRSINLANNSFRAEIPHEVG-NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEI-GNLLK 131 (568)
Q Consensus 54 ~~~~~~L~~L~ls~~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~ 131 (568)
+.+..++++|++++|.++.. +.++ .+.+|+.|++++|.++ .+. .+..+++|++|++++|+++.. ...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence 44555678888888877632 2343 4677788888888776 332 466777788888888777743 3333 35677
Q ss_pred CceeecccccCCCC-CCcccCCCCCCCeEEeccCCCC
Q 041497 132 FQLLNIAENHLRGQ-LPASIGNLSALQEINVNGNRLG 167 (568)
Q Consensus 132 L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~ 167 (568)
|++|++++|.+... ....+..+++|++|++.+|++.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 77777777776531 1133455666666666666654
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=1.1e-09 Score=110.44 Aligned_cols=195 Identities=30% Similarity=0.440 Sum_probs=142.7
Q ss_pred EEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCC-CCcEEeCCCCcCCCCCCcccccCCCCcEEeccCC
Q 041497 38 GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLF-RLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 116 (568)
Q Consensus 38 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 116 (568)
.+++..+.+.... ..+..++.++.|++.++.+. .++....... +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3555555553221 23456688999999999988 5666676774 9999999999998 66677899999999999999
Q ss_pred cccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCC
Q 041497 117 KLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPP 196 (568)
Q Consensus 117 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 196 (568)
++. .++......++|+.|++++|.+. .+|........|+++.+++|... ..+..+..+..+..+.+..+++......
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 250 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPES 250 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccch
Confidence 998 55666668899999999999998 56665566677999999999644 5677788888888888888877654445
Q ss_pred CCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccc
Q 041497 197 INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGS 241 (568)
Q Consensus 197 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 241 (568)
+..++.++.|++++|.+. .++. .....+++.++++++.+...
T Consensus 251 ~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 251 IGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hccccccceecccccccc-cccc--ccccCccCEEeccCcccccc
Confidence 566666666666666655 2332 22556666666666655543
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=3.5e-10 Score=121.80 Aligned_cols=106 Identities=22% Similarity=0.375 Sum_probs=62.4
Q ss_pred CeEEEEeccCCc--cccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEE
Q 041497 34 QRVIGLDLRHQS--IGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKF 111 (568)
Q Consensus 34 ~~i~~L~l~~~~--i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 111 (568)
+.+++|=+.++. +......+|..++.|++||+++|.-...+|+.++++-+|++|+++++.+. .+|..++++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 345555555553 44444445666666666666665544456666666666666666666666 666666666666666
Q ss_pred eccCCcccccCchhhcCcCcCceeecccc
Q 041497 112 EASNNKLAGESPAEIGNLLKFQLLNIAEN 140 (568)
Q Consensus 112 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 140 (568)
++..+.....++.....+++||+|.+...
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 66665544344444445666666666544
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=5.8e-10 Score=78.73 Aligned_cols=61 Identities=38% Similarity=0.557 Sum_probs=47.6
Q ss_pred cccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcc
Q 041497 491 TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 551 (568)
Q Consensus 491 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 551 (568)
++|++|++++|+++.+.+..|..+++|++|++++|.++...++.|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677788888888766667777888888888888888777777788888888888888765
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=4.7e-09 Score=74.06 Aligned_cols=60 Identities=38% Similarity=0.526 Sum_probs=50.7
Q ss_pred CCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCcc
Q 041497 468 KNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNL 527 (568)
Q Consensus 468 ~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 527 (568)
|+|++|++++|+++...+..|. +++|+.|++++|.++...+..|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5788899999988855556776 89999999999999888888899999999999999875
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.72 E-value=4e-10 Score=112.65 Aligned_cols=130 Identities=30% Similarity=0.288 Sum_probs=101.0
Q ss_pred CCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceee
Q 041497 419 KNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLC 497 (568)
Q Consensus 419 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~ 497 (568)
..|...++++|.+. .+...+.-++.+ ++|||++|++.... .+..+++|++|||+.|+++ .+|.... -..|..|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~al-e~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPAL-ESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHh-hhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeee
Confidence 35666777777664 222334444444 89999999998543 7899999999999999998 6776554 34499999
Q ss_pred cccccccccCCccCcCCCCCCEEeCCCCccccCcC-ccccccccCCeeecccCcccccC
Q 041497 498 MQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFESKS 555 (568)
Q Consensus 498 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~~~ 555 (568)
+++|.++.. .++.++++|+.||+++|-+.+... +-+..+..|+.|+|.|||+.|-.
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 999999854 478999999999999999876433 34567788999999999999864
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=7.6e-09 Score=92.96 Aligned_cols=236 Identities=16% Similarity=0.143 Sum_probs=126.4
Q ss_pred CcccCCCCCCcEEeCCCCcCCCCCC-ccc-ccCCCCcEEeccCCcccc--cCchhhcCcCcCceeecccccCCCCCCccc
Q 041497 75 PHEVGNLFRLQNLTLTNNYFSGKIP-TNL-SRCSNLVKFEASNNKLAG--ESPAEIGNLLKFQLLNIAENHLRGQLPASI 150 (568)
Q Consensus 75 ~~~~~~l~~L~~L~l~~n~~~~~~~-~~~-~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 150 (568)
+-.++...-++.|-+.++.+..... ..| ..++.++.+|+.+|+++. .+...+.+++.|++|+++.|++...+...=
T Consensus 38 ~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp 117 (418)
T KOG2982|consen 38 YLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP 117 (418)
T ss_pred eeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc
Confidence 3334444455566666666542111 112 357889999999999874 344556789999999999998874332211
Q ss_pred CCCCCCCeEEeccCCCCCCCC-ccccccccCcEEeeccccccc---CCCCCCCC-CCccEEEeeccccccc-CCCcccCC
Q 041497 151 GNLSALQEINVNGNRLGGRIP-STRSHVRNLISFNVGLNQFSG---MFPPINNI-SSLEYIFIHRNIYHGS-LPLDIGVN 224 (568)
Q Consensus 151 ~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~---~~~~l~~~-~~L~~L~l~~~~~~~~-~~~~~~~~ 224 (568)
....+|+.|.+.++.+..... ..+..+|.+++|+++.|.... ........ +.++.++...|...-. --.....-
T Consensus 118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~ 197 (418)
T KOG2982|consen 118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI 197 (418)
T ss_pred ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh
Confidence 356789999999888765333 345677888888888774331 11111111 2334444333322100 00111123
Q ss_pred CCCcceEeecCCcccccc-CccCCCCCCCCeEecCCCccccc-ccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccC
Q 041497 225 LPNLRFFIISGNNLTGSL-QDSLSNATNLQKLDINRNLFSGK-VSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTN 302 (568)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 302 (568)
+|++..+.+..|++.... ...+..+|.+--|+|+.+++.+. ...++..++.|..|.+.++++.+.........-.+..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 456666666666544321 12333445555666666665432 2233455666666666666655433332222223344
Q ss_pred CCcccEEE
Q 041497 303 CTKLEVLV 310 (568)
Q Consensus 303 ~~~L~~L~ 310 (568)
+++++.|+
T Consensus 278 L~~v~vLN 285 (418)
T KOG2982|consen 278 LTKVQVLN 285 (418)
T ss_pred ccceEEec
Confidence 44455443
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=3.4e-09 Score=106.99 Aligned_cols=173 Identities=26% Similarity=0.213 Sum_probs=82.1
Q ss_pred CCeeECccCccccccCccccCcccccccccccccccCCCC-CCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEc
Q 041497 373 LQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP-PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNL 451 (568)
Q Consensus 373 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~L 451 (568)
|+.|++.+|.+... ..+..++.|+.+++++|.++.... . ...+.+++.+++.+|.+..... +.....+ ..+++
T Consensus 142 L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l-~~~~l 215 (414)
T KOG0531|consen 142 LKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKL-VLLSL 215 (414)
T ss_pred hhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHH-HHhhc
Confidence 44445555544422 233335555555555555543322 1 3445555555555555432221 1111112 22345
Q ss_pred cCCcccccCchhhhcCC--CCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccc
Q 041497 452 SDNLLSGHFPAEVGKLK--NLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 528 (568)
Q Consensus 452 s~n~l~~~~~~~l~~l~--~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 528 (568)
..|.++... .+..+. .|+.+++++|++. ..+..+. +..+..|++++|.+... ..+...+.+..+....|.+.
T Consensus 216 ~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 216 LDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccccceecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 555554211 112222 2666677776665 3322222 56666667766666533 23444555666666666554
Q ss_pred cC---cCc-cccccccCCeeecccCcccccCC
Q 041497 529 GH---IPQ-YLENLSFLSFLNLSYNHFESKSL 556 (568)
Q Consensus 529 ~~---~~~-~~~~l~~L~~L~l~~n~i~~~~~ 556 (568)
.. ... .....+.++.+.+.+|++....+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 291 LSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred chhhhhccccccccccccccccccCccccccc
Confidence 21 111 13455666666677766666544
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=5.6e-09 Score=105.40 Aligned_cols=130 Identities=25% Similarity=0.305 Sum_probs=72.1
Q ss_pred cCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCce
Q 041497 55 GNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQL 134 (568)
Q Consensus 55 ~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 134 (568)
..+..++.+.+..|.+.. +-..+..+.+|+.|++.+|.+. .+...+..+++|++|++++|.++.. ..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 345555566666665542 2333556666777777776665 3333355666666666666666532 23445555666
Q ss_pred eecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCC-ccccccccCcEEeecccccc
Q 041497 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIP-STRSHVRNLISFNVGLNQFS 191 (568)
Q Consensus 135 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 191 (568)
|++++|.+... ..+..++.|+.+++++|.+....+ . +..+.+++.+.+.+|.+.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 66666666532 334446666666666666553222 1 345555555555555544
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7.6e-10 Score=99.28 Aligned_cols=224 Identities=17% Similarity=0.193 Sum_probs=146.0
Q ss_pred CCcEEeCCCCcCCCCCCcccccC--CCCcEEeccCCccccc-CchhhcCc-CcCceeecccccCCC-CCCcccCCCCCCC
Q 041497 83 RLQNLTLTNNYFSGKIPTNLSRC--SNLVKFEASNNKLAGE-SPAEIGNL-LKFQLLNIAENHLRG-QLPASIGNLSALQ 157 (568)
Q Consensus 83 ~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~-~~~~~~~l-~~L~~L~l~~~~l~~-~~~~~~~~l~~L~ 157 (568)
..+++|+.+-.+. |..+..+ .....+.+.+.-.... +.+.+.-. ..|++|||+...++. .+...+..|.+|+
T Consensus 137 lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk 213 (419)
T KOG2120|consen 137 LWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLK 213 (419)
T ss_pred ceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhh
Confidence 4567777776654 4444443 3455566654333211 11222212 459999999887763 2334467889999
Q ss_pred eEEeccCCCCCCCCccccccccCcEEeecccccccCCC---CCCCCCCccEEEeecccccc-cCCCcccCCCCCcceEee
Q 041497 158 EINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP---PINNISSLEYIFIHRNIYHG-SLPLDIGVNLPNLRFFII 233 (568)
Q Consensus 158 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l 233 (568)
.|.+.++++.+.+...+++-..|+.++++.+.--.... -+.+++.|.+|++++|.... .+...+..--++|+.|++
T Consensus 214 ~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNl 293 (419)
T KOG2120|consen 214 NLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNL 293 (419)
T ss_pred hccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhh
Confidence 99999999988888888999999999999885433332 57789999999999997653 233333444578899999
Q ss_pred cCCccc---cccCccCCCCCCCCeEecCCCc-ccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEE
Q 041497 234 SGNNLT---GSLQDSLSNATNLQKLDINRNL-FSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309 (568)
Q Consensus 234 ~~~~~~---~~~~~~l~~~~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 309 (568)
+++.-. .....-...||+|.+|||++|. ++......|..++.|++|.++.|-..... ..--+...|+|.+|
T Consensus 294 sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~-----~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 294 SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPE-----TLLELNSKPSLVYL 368 (419)
T ss_pred hhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChH-----HeeeeccCcceEEE
Confidence 887421 1111223568999999999885 44333344667788888888887543211 11125667788888
Q ss_pred EeccC
Q 041497 310 VLDSN 314 (568)
Q Consensus 310 ~l~~~ 314 (568)
++.++
T Consensus 369 dv~g~ 373 (419)
T KOG2120|consen 369 DVFGC 373 (419)
T ss_pred Eeccc
Confidence 87765
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=5.5e-09 Score=93.84 Aligned_cols=177 Identities=17% Similarity=0.135 Sum_probs=98.0
Q ss_pred CCcEEeCCCCcCCCC-CCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCC--CCcccCCCCCCCeE
Q 041497 83 RLQNLTLTNNYFSGK-IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQ--LPASIGNLSALQEI 159 (568)
Q Consensus 83 ~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L 159 (568)
.||++|+++..++.. +-..+..|.+|+.|.+.++++...+...+..-.+|+.|+++.++=... ..-.+.+|..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 366666666655421 112245566666666666666655555666666666666666532111 11123456666667
Q ss_pred EeccCCCCCCCCccc-c-ccccCcEEeeccccccc---CCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEee
Q 041497 160 NVNGNRLGGRIPSTR-S-HVRNLISFNVGLNQFSG---MFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFII 233 (568)
Q Consensus 160 ~l~~~~~~~~~~~~l-~-~l~~L~~L~l~~~~~~~---~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 233 (568)
++++|.+......++ . --++|..|+++|+.-.- +.. -...+|+|.+|+++++.....--...+.+++.|+++.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 776666543222211 1 13456666776664321 111 33457778888887665321222222337788888888
Q ss_pred cCCccccccCc---cCCCCCCCCeEecCCCc
Q 041497 234 SGNNLTGSLQD---SLSNATNLQKLDINRNL 261 (568)
Q Consensus 234 ~~~~~~~~~~~---~l~~~~~L~~L~L~~n~ 261 (568)
+.|.. ++|. .+...|.|.+|+..++-
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 87742 2333 34567888888887773
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=3.8e-08 Score=88.58 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=70.6
Q ss_pred cCcEEeecccccccCCC---CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccc-cCccCCCCCCCCe
Q 041497 179 NLISFNVGLNQFSGMFP---PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGS-LQDSLSNATNLQK 254 (568)
Q Consensus 179 ~L~~L~l~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~ 254 (568)
.++.+++..|....+.. ...-+|++..+.+..|+++....+.-+..+|.+..|+++.+++.+. ..+.+.+++.|..
T Consensus 174 ~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~d 253 (418)
T KOG2982|consen 174 EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVD 253 (418)
T ss_pred hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhe
Confidence 45555555554443322 2234678888888888777655555555778888899998887753 2456788999999
Q ss_pred EecCCCcccccccCC------ccCCCCCcEEECC
Q 041497 255 LDINRNLFSGKVSIN------FGGLQNLSWLNLG 282 (568)
Q Consensus 255 L~L~~n~~~~~~~~~------~~~~~~L~~L~l~ 282 (568)
|.++++.+.+..... ++.+++++.|+=+
T Consensus 254 lRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 254 LRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred eeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 999999886543322 4677888887654
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.32 E-value=7.6e-08 Score=85.52 Aligned_cols=180 Identities=19% Similarity=0.246 Sum_probs=97.7
Q ss_pred CeEEEEeccCCccccccCC----cccCCCCCceeeccCCcc---ccc-------CCcccCCCCCCcEEeCCCCcCCCCCC
Q 041497 34 QRVIGLDLRHQSIGGFLSP----FVGNLSFLRSINLANNSF---RAE-------IPHEVGNLFRLQNLTLTNNYFSGKIP 99 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~----~~~~~~~L~~L~ls~~~~---~~~-------~~~~~~~l~~L~~L~l~~n~~~~~~~ 99 (568)
..++.+|||||.|...... .+.+-.+|++.+++.-.. .+. +..++.+||+|+..++|.|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 5678889999988754333 355667888888776321 112 22345688888888888888876666
Q ss_pred ccc----ccCCCCcEEeccCCccccc----Cchh---------hcCcCcCceeecccccCCCC----CCcccCCCCCCCe
Q 041497 100 TNL----SRCSNLVKFEASNNKLAGE----SPAE---------IGNLLKFQLLNIAENHLRGQ----LPASIGNLSALQE 158 (568)
Q Consensus 100 ~~~----~~l~~L~~L~l~~n~~~~~----~~~~---------~~~l~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~ 158 (568)
..+ +.-+.|++|.+++|.+.-. +..+ ...-+.|+......|.+..- ....+.....|++
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 543 4567888888888876421 1111 12234555555555554311 0111222345566
Q ss_pred EEeccCCCCCCCCc-----cccccccCcEEeecccccccCCC-----CCCCCCCccEEEeecccc
Q 041497 159 INVNGNRLGGRIPS-----TRSHVRNLISFNVGLNQFSGMFP-----PINNISSLEYIFIHRNIY 213 (568)
Q Consensus 159 L~l~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~ 213 (568)
+.+..|.+.-.... .+..+.+|+.||+..|.++...+ .++.++.|+.|.+..|.+
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 66665554321111 12334555555555555543222 334444455555544443
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.25 E-value=2.3e-07 Score=82.59 Aligned_cols=186 Identities=16% Similarity=0.093 Sum_probs=129.5
Q ss_pred ccCCCeeECccCccccccC----ccccCcccccccccccccccCCCC-------------CCccCCCCceEEEcccCCCC
Q 041497 370 LKSLQMLFLHENVLQGTIP----SFLGNLTMLTQRLLEVNDLLGNIP-------------PSIGNCKNLILLTTRKNKPS 432 (568)
Q Consensus 370 ~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~~ 432 (568)
||.|+.+++++|.+....+ +.+..-+.|++|.+++|.+.-... .-..+-|.|+++....|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 8999999999998875544 346778899999999997742211 12345689999999999986
Q ss_pred CCCCCchh---HHhhhceEEEccCCcccccC-----chhhhcCCCCcEEecCCCcccccCCCc----cc-ccccceeecc
Q 041497 433 GTMPRQLP---RIITLSVLLNLSDNLLSGHF-----PAEVGKLKNLVSLDISSNMFSGEIPTT----LG-CTSLEYLCMQ 499 (568)
Q Consensus 433 ~~~~~~~~---~~~~l~~~l~Ls~n~l~~~~-----~~~l~~l~~L~~L~ls~n~l~~~~~~~----~~-~~~L~~L~Ls 499 (568)
......+. .....+..+.+..|.|.... ...+..+.+|+.||+..|-++..-... .. .+.|++|.+.
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 54433222 22234477888899887432 224567899999999999887433332 23 6779999999
Q ss_pred cccccccCCccC----c--CCCCCCEEeCCCCccccC-cCc----cc--cccccCCeeecccCcccccC
Q 041497 500 DNSFTGSIPSTL----S--SLKSITELDLSRNNLSGH-IPQ----YL--ENLSFLSFLNLSYNHFESKS 555 (568)
Q Consensus 500 ~n~l~~~~~~~~----~--~l~~L~~L~l~~n~l~~~-~~~----~~--~~l~~L~~L~l~~n~i~~~~ 555 (568)
+|-++......+ . ..|+|+.|-..+|.+.+- +.. .| ..+|-|..+.+.||+|+...
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 998876554332 2 368899999999987542 221 11 35677888889999987653
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.19 E-value=2.2e-07 Score=93.58 Aligned_cols=105 Identities=26% Similarity=0.260 Sum_probs=85.2
Q ss_pred eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecccccccccCCccCcCCCCCCEEeCCCCc
Q 041497 447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNN 526 (568)
Q Consensus 447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 526 (568)
...+.++|.+. .+.+++.-++.|+.|+|++|+++ .+....-|+.|+.|||++|.+....--.-..+ .|+.|.+++|-
T Consensus 167 ~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 167 ATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA 243 (1096)
T ss_pred hhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhHHHHhcccccccccccchhccccccchhhh-hheeeeecccH
Confidence 56689999998 77789999999999999999998 45444449999999999999984433333444 49999999999
Q ss_pred cccCcCccccccccCCeeecccCcccccCC
Q 041497 527 LSGHIPQYLENLSFLSFLNLSYNHFESKSL 556 (568)
Q Consensus 527 l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 556 (568)
++.. ..++++++|+.||+++|-|.+-.+
T Consensus 244 l~tL--~gie~LksL~~LDlsyNll~~hse 271 (1096)
T KOG1859|consen 244 LTTL--RGIENLKSLYGLDLSYNLLSEHSE 271 (1096)
T ss_pred HHhh--hhHHhhhhhhccchhHhhhhcchh
Confidence 8842 568999999999999997766543
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.19 E-value=3.8e-08 Score=92.75 Aligned_cols=251 Identities=16% Similarity=0.078 Sum_probs=130.8
Q ss_pred ccccCcEEeecccccccCCC---CCCCCCCccEEEeeccc-ccccCCCcccCCCCCcceEeecCCc-cccccCc-cCCCC
Q 041497 176 HVRNLISFNVGLNQFSGMFP---PINNISSLEYIFIHRNI-YHGSLPLDIGVNLPNLRFFIISGNN-LTGSLQD-SLSNA 249 (568)
Q Consensus 176 ~l~~L~~L~l~~~~~~~~~~---~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~l~~~ 249 (568)
.++++++|.+.++...+... .-..++.++.+++..|. ++.........++++|+++++++|. +++.... ...++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 34455555554444222211 11234555555555532 2322333344467777777777763 3332111 23455
Q ss_pred CCCCeEecCCCccccccc--CCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCc-ccCcCchhhhc
Q 041497 250 TNLQKLDINRNLFSGKVS--INFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNR-FGAVLPFSLAN 326 (568)
Q Consensus 250 ~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~ 326 (568)
..++.+.+.+|.-.+... ..-+.+..+.++++..|...+.. +....-..+..|+.++.+++. +++.+.+.+..
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~----~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE----DLWLIACGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch----HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 566666666654221111 11134555666666666332211 222234467778888887764 33444455555
Q ss_pred ccccceEEEcccCc-ccCCCChhh-hhhccccccCccccccchhh--------ccCCCeeECccCcccccc-----Cccc
Q 041497 327 LSTTMTGIAFGNNQ-ISGFIPDGI-ANLVNLNALGVEFNQLAVTI--------LKSLQMLFLHENVLQGTI-----PSFL 391 (568)
Q Consensus 327 ~~~~l~~L~l~~~~-l~~~~~~~~-~~~~~L~~l~l~~~~~~~~~--------~~~L~~L~l~~~~~~~~~-----~~~~ 391 (568)
-..+++.+.+..|+ +++.-...+ ..++.|+.+++..+...... |+.||.+.++.|....+. ...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 55668888888775 333322222 23566777777766553322 777777777776543221 2223
Q ss_pred cCccccccccccccccc-CCCCCCccCCCCceEEEcccCC
Q 041497 392 GNLTMLTQRLLEVNDLL-GNIPPSIGNCKNLILLTTRKNK 430 (568)
Q Consensus 392 ~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~ 430 (568)
..+..|+.+.++++..+ ......+..|++|+.+++-+++
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 44566777777776643 2334455667777776666554
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=2e-07 Score=74.12 Aligned_cols=108 Identities=21% Similarity=0.308 Sum_probs=55.1
Q ss_pred EEEccCCcccccCchhhh-cCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497 448 LLNLSDNLLSGHFPAEVG-KLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525 (568)
Q Consensus 448 ~l~Ls~n~l~~~~~~~l~-~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 525 (568)
..+|++|.+. ..|..|. ..+..+.|++++|.++ .+|..+. ++.|+.|+++.|.+. ..|..+..+.+|-.||..+|
T Consensus 57 ~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 57 KISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred EEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence 3456666655 3333333 3445566666666665 5555555 666666666666655 33444444555555565555
Q ss_pred ccccCcCccccccccCCeeecccCcccccCCCCc
Q 041497 526 NLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVW 559 (568)
Q Consensus 526 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 559 (568)
.+..+.-+ +---+..-..++.++++.+.++...
T Consensus 134 a~~eid~d-l~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 134 ARAEIDVD-LFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred ccccCcHH-HhccccHHHHHhcCCcccccCcccc
Confidence 55432222 1111222233456666666666554
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.03 E-value=1.5e-07 Score=88.81 Aligned_cols=273 Identities=17% Similarity=0.074 Sum_probs=134.1
Q ss_pred CCCCeEecCCCcccccccC--CccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccC-cccCcCchhhhc
Q 041497 250 TNLQKLDINRNLFSGKVSI--NFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN-RFGAVLPFSLAN 326 (568)
Q Consensus 250 ~~L~~L~L~~n~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~ 326 (568)
..|+.|.+.++.-.+..+. ....+++++.|++.+|...+. ..+...-..|+.++.+++..| .++...-..++.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd----~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITD----SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccH----HHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 3588888888864332221 235678888888888763221 123334567888888888875 344433333333
Q ss_pred ccccceEEEcccCc-ccCCC-ChhhhhhccccccCccccccc--------hhhccCCCeeECccCc-cccccC-ccccCc
Q 041497 327 LSTTMTGIAFGNNQ-ISGFI-PDGIANLVNLNALGVEFNQLA--------VTILKSLQMLFLHENV-LQGTIP-SFLGNL 394 (568)
Q Consensus 327 ~~~~l~~L~l~~~~-l~~~~-~~~~~~~~~L~~l~l~~~~~~--------~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~ 394 (568)
.-+++++++++.|. +.+.. ......++.++.+..++|.-. ...++.+.++++..|. +++... ..-..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 34457888888774 44321 223344555555555544321 1114555566655553 222211 112446
Q ss_pred ccccccccccccc-cCCCCCCc-cCCCCceEEEcccCCCCCC-CCCchhHHhhhceEEEccCCccccc--CchhhhcCCC
Q 041497 395 TMLTQRLLEVNDL-LGNIPPSI-GNCKNLILLTTRKNKPSGT-MPRQLPRIITLSVLLNLSDNLLSGH--FPAEVGKLKN 469 (568)
Q Consensus 395 ~~L~~L~l~~~~~-~~~~~~~l-~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~~l~Ls~n~l~~~--~~~~l~~l~~ 469 (568)
..|+.++.+++.. ++....++ .++.+|+.+.+..|+-.+. -...+.....-++.+++.++..... +...-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 7777777766543 22222233 4577788887777753211 1111111111114445555432211 1111224566
Q ss_pred CcEEecCCCcc-cccCCCcc-----cccccceeeccccccc-ccCCccCcCCCCCCEEeCCCCc
Q 041497 470 LVSLDISSNMF-SGEIPTTL-----GCTSLEYLCMQDNSFT-GSIPSTLSSLKSITELDLSRNN 526 (568)
Q Consensus 470 L~~L~ls~n~l-~~~~~~~~-----~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~ 526 (568)
|++|.++.|.. +++....+ +...|+.+.|++++.+ +...+-+..+++|+.+++..+.
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 66666665532 22200111 1455556666665532 2223344455556666655554
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.01 E-value=8e-07 Score=70.79 Aligned_cols=106 Identities=25% Similarity=0.336 Sum_probs=63.4
Q ss_pred CeEEEEeccCCccccccCC---cccCCCCCceeeccCCcccccCCccc-CCCCCCcEEeCCCCcCCCCCCcccccCCCCc
Q 041497 34 QRVIGLDLRHQSIGGFLSP---FVGNLSFLRSINLANNSFRAEIPHEV-GNLFRLQNLTLTNNYFSGKIPTNLSRCSNLV 109 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~---~~~~~~~L~~L~ls~~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 109 (568)
.....+||+.+++-- +++ .+....+|+.+++++|.+.. +|..| ..++.+++|++++|.++ ..|..+..++.|+
T Consensus 27 kE~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred HHhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 444556666664431 111 23344556666777776663 34333 34456777777777776 5566677777777
Q ss_pred EEeccCCcccccCchhhcCcCcCceeecccccCC
Q 041497 110 KFEASNNKLAGESPAEIGNLLKFQLLNIAENHLR 143 (568)
Q Consensus 110 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~ 143 (568)
.|++..|++. ..|..+..+.++.+|+..+|.+.
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 7777777765 45666666777777776666554
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=7.8e-06 Score=52.56 Aligned_cols=36 Identities=39% Similarity=0.603 Sum_probs=18.2
Q ss_pred ccceeecccccccccCCccCcCCCCCCEEeCCCCccc
Q 041497 492 SLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 528 (568)
Q Consensus 492 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 528 (568)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33333555555555555555555
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.85 E-value=2.9e-05 Score=66.52 Aligned_cols=59 Identities=27% Similarity=0.325 Sum_probs=28.5
Q ss_pred CCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCccc
Q 041497 59 FLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119 (568)
Q Consensus 59 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 119 (568)
+...+|+++|.+.. ...|..++.|.+|.+++|+++.+.|.--..+++|..|.+.+|.+.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 44455555555431 112344555555555555555444433334455555555555543
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=2.4e-05 Score=50.32 Aligned_cols=40 Identities=45% Similarity=0.587 Sum_probs=33.1
Q ss_pred CCCCEEeCCCCccccCcCccccccccCCeeecccCcccccC
Q 041497 515 KSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKS 555 (568)
Q Consensus 515 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 555 (568)
++|++|++++|.++. +|..++++++|+.|++++|+|+.-.
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCCc
Confidence 579999999999996 4556899999999999999998543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.66 E-value=5.6e-05 Score=64.82 Aligned_cols=103 Identities=21% Similarity=0.150 Sum_probs=80.1
Q ss_pred eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccC-CccCcCCCCCCEEeCCC
Q 041497 447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSI-PSTLSSLKSITELDLSR 524 (568)
Q Consensus 447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~l~~ 524 (568)
..+||++|.+.- ...|..++.|..|.+.+|+++..-|.... +++|..|.|.+|++.... .+.+..+|+|+.|.+-+
T Consensus 45 d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 678999998862 24678889999999999999966666665 888999999999886432 35677889999999999
Q ss_pred CccccCcC---ccccccccCCeeecccCcc
Q 041497 525 NNLSGHIP---QYLENLSFLSFLNLSYNHF 551 (568)
Q Consensus 525 n~l~~~~~---~~~~~l~~L~~L~l~~n~i 551 (568)
|+++..-- ..+..+|+|+.||.++=.-
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhhhH
Confidence 99875322 3457889999999876543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=2.1e-05 Score=83.28 Aligned_cols=108 Identities=12% Similarity=0.204 Sum_probs=61.2
Q ss_pred CCCcEEeCCCCcCCCC-CCccc-ccCCCCcEEeccCCccccc-CchhhcCcCcCceeecccccCCCCCCcccCCCCCCCe
Q 041497 82 FRLQNLTLTNNYFSGK-IPTNL-SRCSNLVKFEASNNKLAGE-SPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQE 158 (568)
Q Consensus 82 ~~L~~L~l~~n~~~~~-~~~~~-~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 158 (568)
.+|++|++++...... -|..+ .-+|+|+.|.+.+-.+... ......++++|..||+++++++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4677777776533211 11222 2467777777776554321 122334567777777777777633 56677777777
Q ss_pred EEeccCCCCC-CCCccccccccCcEEeecccccc
Q 041497 159 INVNGNRLGG-RIPSTRSHVRNLISFNVGLNQFS 191 (568)
Q Consensus 159 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~ 191 (568)
|.+.+-.+.. ..-..+..+++|+.||++.....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 7777655543 22234556666666766655443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.51 E-value=0.00035 Score=68.24 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=15.2
Q ss_pred cccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497 491 TSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525 (568)
Q Consensus 491 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 525 (568)
++|+.|++++|... ..|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45555555555543 2333222 34555555544
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.50 E-value=0.00026 Score=58.69 Aligned_cols=107 Identities=22% Similarity=0.279 Sum_probs=50.2
Q ss_pred CcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCc
Q 041497 52 PFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLK 131 (568)
Q Consensus 52 ~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 131 (568)
.+|.++++|+.+.+.. .+......+|.++++|+.+.+..+ +.......|..++.|+.+.+.. .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3566666677777664 344444555666666777777664 4434455566666677777754 333233445556666
Q ss_pred CceeecccccCCCCCCcccCCCCCCCeEEecc
Q 041497 132 FQLLNIAENHLRGQLPASIGNLSALQEINVNG 163 (568)
Q Consensus 132 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 163 (568)
|+.+.+..+ +.......+.++ .|+.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 766666543 332333445555 666666554
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.43 E-value=2.8e-05 Score=82.30 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=59.2
Q ss_pred CCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCccccc-ccCCccCCCCCcE
Q 041497 200 ISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGK-VSINFGGLQNLSW 278 (568)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~ 278 (568)
+|+|+.|.+.+-.+...--...+..+|+|..||++++.++.. ..++.+++|+.|.+.+-++... .-..+..+++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 455555555444332211123334666666666666666543 3455566666666666665431 1122455667777
Q ss_pred EECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccC
Q 041497 279 LNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGA 318 (568)
Q Consensus 279 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 318 (568)
||++.............+...-..+|.|+.||.++..+.+
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7776654433221111122223346667777777665544
No 63
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.40 E-value=4.8e-05 Score=48.78 Aligned_cols=30 Identities=57% Similarity=1.132 Sum_probs=22.6
Q ss_pred CcccCC-CCCCCCCCCCCC--CCCceeeeceeC
Q 041497 1 MKSQLQ-DPLGVTSSWNNS--INLCQWTGVTCG 30 (568)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~~--~~~c~~~~~~c~ 30 (568)
||+++. ||..++.+|+.+ .++|.|.||.|.
T Consensus 11 ~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 11 FKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred HHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 688899 688999999887 799999999994
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.36 E-value=0.00046 Score=57.19 Aligned_cols=122 Identities=17% Similarity=0.194 Sum_probs=49.9
Q ss_pred cccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCC
Q 041497 390 FLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKN 469 (568)
Q Consensus 390 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~ 469 (568)
.|.++.+|+.+.+.. .+......+|.++++|+.+.+.. + +......+|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~-------------------------~-~~~i~~~~F~~~~~ 59 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN-------------------------N-LTSIGDNAFSNCKS 59 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS-------------------------T-TSCE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc-------------------------c-ccccceeeeecccc
Confidence 455555555555543 33334444555555555554433 2 22233345666666
Q ss_pred CcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCC
Q 041497 470 LVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLS 542 (568)
Q Consensus 470 L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 542 (568)
++.+.+.+ .+.......|. +++|+.+++..+ ++......|.++ .|+.+.+.. .+.......|.++++|+
T Consensus 60 l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 60 LESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp -EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 77777765 33223344454 677777777654 444555566665 777777765 44445555666666553
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.12 E-value=0.0026 Score=62.25 Aligned_cols=56 Identities=14% Similarity=0.215 Sum_probs=33.8
Q ss_pred ccCCCCCceeeccCCcccccCCcccCCCC-CCcEEeCCCCcCCCCCCcccccCCCCcEEeccCC
Q 041497 54 VGNLSFLRSINLANNSFRAEIPHEVGNLF-RLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 116 (568)
Q Consensus 54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 116 (568)
+..+.++++|++++|.+. .+| .+| +|++|.++++.--..+|+.+ .++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 445677778888877665 345 233 57777777643222555433 246777777766
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.001 Score=59.77 Aligned_cols=39 Identities=31% Similarity=0.444 Sum_probs=18.3
Q ss_pred CCCCCcEEeCCCC--cCCCCCCcccccCCCCcEEeccCCcc
Q 041497 80 NLFRLQNLTLTNN--YFSGKIPTNLSRCSNLVKFEASNNKL 118 (568)
Q Consensus 80 ~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~ 118 (568)
.+++|+.|.++.| ++++.++--...+++|++++++.|++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 3445555555555 33322332233445555555555554
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.47 E-value=0.00046 Score=71.82 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=16.1
Q ss_pred cccCcccccccccccccccCCC-CCCccCCCCc
Q 041497 390 FLGNLTMLTQRLLEVNDLLGNI-PPSIGNCKNL 421 (568)
Q Consensus 390 ~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L 421 (568)
....++.++.+.+..+...... ...+.+|+.|
T Consensus 357 ~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 3455666666666665533322 2334445555
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.35 E-value=0.0025 Score=57.39 Aligned_cols=97 Identities=24% Similarity=0.294 Sum_probs=60.5
Q ss_pred eEEEccCCcccccCchhhhcCCCCcEEecCCC--cccccCCCccc-ccccceeecccccccc-cCCccCcCCCCCCEEeC
Q 041497 447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSN--MFSGEIPTTLG-CTSLEYLCMQDNSFTG-SIPSTLSSLKSITELDL 522 (568)
Q Consensus 447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n--~l~~~~~~~~~-~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~l 522 (568)
+.+.+.+..++.. ..+-.+++|++|.++.| ++.+.++.... +++|+.+++++|++.. .....+..+++|..||+
T Consensus 46 e~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 46 ELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred hhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 4445556655522 24566788888888888 55444433333 6888888888888763 11234566777888888
Q ss_pred CCCccccCcC---ccccccccCCeee
Q 041497 523 SRNNLSGHIP---QYLENLSFLSFLN 545 (568)
Q Consensus 523 ~~n~l~~~~~---~~~~~l~~L~~L~ 545 (568)
..|+.++.-. ..|.-+++|+.++
T Consensus 124 ~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 124 FNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred ccCCccccccHHHHHHHHhhhhcccc
Confidence 8888765322 2344455555554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.00019 Score=64.65 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=42.8
Q ss_pred CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccC-chhhcCcCcCceee
Q 041497 58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGES-PAEIGNLLKFQLLN 136 (568)
Q Consensus 58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~ 136 (568)
.+++.|+.+++.+.++ +.+.+++.|++|.|+-|.|+. .+.+..|++|+.|+|..|.+.... ...+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3455555666555432 123456666666666666652 223556666666666666554211 12344556666666
Q ss_pred cccccCC
Q 041497 137 IAENHLR 143 (568)
Q Consensus 137 l~~~~l~ 143 (568)
|..|+-.
T Consensus 95 L~ENPCc 101 (388)
T KOG2123|consen 95 LDENPCC 101 (388)
T ss_pred hccCCcc
Confidence 6555444
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.0004 Score=62.69 Aligned_cols=82 Identities=24% Similarity=0.233 Sum_probs=49.2
Q ss_pred CCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCC
Q 041497 225 LPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCT 304 (568)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 304 (568)
+.+.+.|+.-+|.+.++ .....++.|+.|.|+-|+|+...+ +..+++|++|.|..|.|.++.. +..+.++|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldE-----L~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDE-----LEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHH-----HHHHhcCc
Confidence 44556666666666543 233456667777777777765544 4566667777777666655432 23456666
Q ss_pred cccEEEeccCc
Q 041497 305 KLEVLVLDSNR 315 (568)
Q Consensus 305 ~L~~L~l~~~~ 315 (568)
+|+.|.+..|.
T Consensus 89 sLr~LWL~ENP 99 (388)
T KOG2123|consen 89 SLRTLWLDENP 99 (388)
T ss_pred hhhhHhhccCC
Confidence 66666666654
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.83 E-value=0.0014 Score=68.29 Aligned_cols=62 Identities=23% Similarity=0.182 Sum_probs=29.7
Q ss_pred ccccceeecccccccccC-CccCcCCCCC--------------CEEeCCCCccc-cCcCccccc-cccCCeeecccCcc
Q 041497 490 CTSLEYLCMQDNSFTGSI-PSTLSSLKSI--------------TELDLSRNNLS-GHIPQYLEN-LSFLSFLNLSYNHF 551 (568)
Q Consensus 490 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L--------------~~L~l~~n~l~-~~~~~~~~~-l~~L~~L~l~~n~i 551 (568)
++.++.+.+.++...... ...+.+++.| +.|+++.+... ...-..... +..++.+++.+++.
T Consensus 361 ~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 361 CPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred CCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 667777777666643222 1233344433 56666665533 222222222 44455566665543
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.93 E-value=0.011 Score=31.33 Aligned_cols=12 Identities=50% Similarity=0.791 Sum_probs=5.7
Q ss_pred cceeeccccccc
Q 041497 493 LEYLCMQDNSFT 504 (568)
Q Consensus 493 L~~L~Ls~n~l~ 504 (568)
|+.|+|++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.40 E-value=0.02 Score=30.34 Aligned_cols=19 Identities=26% Similarity=0.558 Sum_probs=10.2
Q ss_pred CceeeccCCcccccCCcccC
Q 041497 60 LRSINLANNSFRAEIPHEVG 79 (568)
Q Consensus 60 L~~L~ls~~~~~~~~~~~~~ 79 (568)
|++|++++|.++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555666666555 4454443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.83 E-value=0.00089 Score=67.96 Aligned_cols=184 Identities=21% Similarity=0.167 Sum_probs=81.1
Q ss_pred ceEEEcccCcccCCCC----hhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCc-ccccccccccc
Q 041497 331 MTGIAFGNNQISGFIP----DGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNL-TMLTQRLLEVN 405 (568)
Q Consensus 331 l~~L~l~~~~l~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~ 405 (568)
+..+.+.+|.+.+... ..+.....|+.++++.|.+....... +...+... ..++.|++..|
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~--------------l~~~l~~~~~~l~~L~l~~c 154 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARL--------------LCEGLRLPQCLLQTLELVSC 154 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHH--------------HHhhcccchHHHHHHHhhcc
Confidence 6667777777654332 23334444555555544443222000 00111111 34445555555
Q ss_pred cccCCCC----CCccCCCCceEEEcccCCCCCC----CCCchhH----HhhhceEEEccCCcccccC----chhhhcCCC
Q 041497 406 DLLGNIP----PSIGNCKNLILLTTRKNKPSGT----MPRQLPR----IITLSVLLNLSDNLLSGHF----PAEVGKLKN 469 (568)
Q Consensus 406 ~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~----~~~l~~~l~Ls~n~l~~~~----~~~l~~l~~ 469 (568)
.+++... ..+..++.++.++++.|.+... .+..+.. ...+ +.|.+++|.++... ...+...++
T Consensus 155 ~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~l-e~L~L~~~~~t~~~c~~l~~~l~~~~~ 233 (478)
T KOG4308|consen 155 SLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSL-ETLKLSRCGVTSSSCALLDEVLASGES 233 (478)
T ss_pred cccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccH-HHHhhhhcCcChHHHHHHHHHHhccch
Confidence 5544322 2344456666666666655311 0111111 1112 44455555544211 123334444
Q ss_pred -CcEEecCCCcccccCC----Cccc-c-cccceeecccccccccCC----ccCcCCCCCCEEeCCCCcccc
Q 041497 470 -LVSLDISSNMFSGEIP----TTLG-C-TSLEYLCMQDNSFTGSIP----STLSSLKSITELDLSRNNLSG 529 (568)
Q Consensus 470 -L~~L~ls~n~l~~~~~----~~~~-~-~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~ 529 (568)
+++|++..|.+.+... ..+. + ..++.++++.|.++.... ..+..++.++.+.+.+|++..
T Consensus 234 ~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 234 LLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 5556666665542211 1111 2 455666666666554222 333444556666666666543
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.82 E-value=0.0061 Score=52.70 Aligned_cols=80 Identities=21% Similarity=0.194 Sum_probs=53.1
Q ss_pred eEEEccCCcccccCchhhhcCCCCcEEecCCCc-ccccCCCccc--ccccceeeccccc-ccccCCccCcCCCCCCEEeC
Q 041497 447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNM-FSGEIPTTLG--CTSLEYLCMQDNS-FTGSIPSTLSSLKSITELDL 522 (568)
Q Consensus 447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~~~~~--~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~l 522 (568)
+.+|-+++.|.....+-+..++.++.|.+.+|. +.+.....++ .++|+.|+|++|. ||+.....+..+++|+.|.+
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 556666666665556677778888888888884 3222222222 6788888888774 77666667777777877777
Q ss_pred CCCc
Q 041497 523 SRNN 526 (568)
Q Consensus 523 ~~n~ 526 (568)
..=+
T Consensus 184 ~~l~ 187 (221)
T KOG3864|consen 184 YDLP 187 (221)
T ss_pred cCch
Confidence 6544
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.41 E-value=0.0035 Score=55.24 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=67.0
Q ss_pred hhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccC
Q 041497 463 EVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL 541 (568)
Q Consensus 463 ~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 541 (568)
.+......+.||++.|++- ..-..|+ ++.|..|+++.|++. ..|..+.+...+..+++..|..+ ..|..+...+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4556677788888888876 5555566 788888888888887 77777888888888888888877 457777888888
Q ss_pred CeeecccCcccc
Q 041497 542 SFLNLSYNHFES 553 (568)
Q Consensus 542 ~~L~l~~n~i~~ 553 (568)
+.+++.+|++.-
T Consensus 114 k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 114 KKNEQKKTEFFR 125 (326)
T ss_pred chhhhccCcchH
Confidence 888888887543
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.36 E-value=0.0032 Score=55.46 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=63.6
Q ss_pred ccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCC
Q 041497 77 EVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSAL 156 (568)
Q Consensus 77 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 156 (568)
.+......+.||++.|++. ..-..|.-++.|.+++++.|++. ..|..++....++.+++..|+.+ ..|.+++..|++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3455666677777777665 44445667777778888877776 56777888888888887777776 677888888888
Q ss_pred CeEEeccCCCC
Q 041497 157 QEINVNGNRLG 167 (568)
Q Consensus 157 ~~L~l~~~~~~ 167 (568)
+++++.++.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88888777653
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.53 E-value=0.074 Score=26.09 Aligned_cols=13 Identities=46% Similarity=0.705 Sum_probs=5.2
Q ss_pred CCcEEecCCCccc
Q 041497 469 NLVSLDISSNMFS 481 (568)
Q Consensus 469 ~L~~L~ls~n~l~ 481 (568)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.81 E-value=0.0022 Score=65.21 Aligned_cols=203 Identities=23% Similarity=0.186 Sum_probs=101.2
Q ss_pred CCeEecCCCccccccc----CCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCC-CcccEEEeccCcccCcCchhhhc
Q 041497 252 LQKLDINRNLFSGKVS----INFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNC-TKLEVLVLDSNRFGAVLPFSLAN 326 (568)
Q Consensus 252 L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~ 326 (568)
+..+.|.+|.+..... ..+...+.|..|++++|++.+... ..+...+... ..++.|++..|.++......+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~--~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l-- 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGA--RLLCEGLRLPQCLLQTLELVSCSLTSEGAAPL-- 164 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhH--HHHHhhcccchHHHHHHHhhcccccccchHHH--
Confidence 6667777776653322 224556666777777776663221 1223333333 445555555555544322221
Q ss_pred ccccceEEEcccCcccCCCChhhhhhccccccCccccccchhh--------------ccCCCeeECccCccccc----cC
Q 041497 327 LSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI--------------LKSLQMLFLHENVLQGT----IP 388 (568)
Q Consensus 327 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~--------------~~~L~~L~l~~~~~~~~----~~ 388 (568)
...+.....++.++++.|.+.... ..+++++.+..|.++.. +.
T Consensus 165 -------------------~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 165 -------------------AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred -------------------HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 222333334444444444432111 33466666666665422 11
Q ss_pred ccccCccc-ccccccccccccCC----CCCCccCC-CCceEEEcccCCCCCCCCCchh----HHhhhceEEEccCCcccc
Q 041497 389 SFLGNLTM-LTQRLLEVNDLLGN----IPPSIGNC-KNLILLTTRKNKPSGTMPRQLP----RIITLSVLLNLSDNLLSG 458 (568)
Q Consensus 389 ~~~~~~~~-L~~L~l~~~~~~~~----~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~----~~~~l~~~l~Ls~n~l~~ 458 (568)
..+...+. +..++++.|.+.+. ....+..+ ..++.+++..|++.......+. .+..+ +.+.+++|.+..
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l-~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQL-EELSLSNNPLTD 304 (478)
T ss_pred HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHH-HHhhcccCcccc
Confidence 23444455 66678887777543 12234444 5677778888877666544433 23323 566777777663
Q ss_pred cCc----hhhhcCCCCcEEecCCC
Q 041497 459 HFP----AEVGKLKNLVSLDISSN 478 (568)
Q Consensus 459 ~~~----~~l~~l~~L~~L~ls~n 478 (568)
... ..+.....+..+-+.++
T Consensus 305 ~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 305 YGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHHhhhcccchhhhcccc
Confidence 221 12333445555555544
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.82 E-value=0.04 Score=47.79 Aligned_cols=82 Identities=20% Similarity=0.177 Sum_probs=45.9
Q ss_pred CeEEEEeccCCccccccCCcccCCCCCceeeccCCccccc-CCcccC-CCCCCcEEeCCCC-cCCCCCCcccccCCCCcE
Q 041497 34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAE-IPHEVG-NLFRLQNLTLTNN-YFSGKIPTNLSRCSNLVK 110 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~-~~~~~~-~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~ 110 (568)
-.|..+|-+++.|.......+.+++.++.|.+.+++--+. -.+.++ -.++|+.|++++| +||+.....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3466777777777666556666667777777666642211 111111 2356666666655 555444444555666666
Q ss_pred EeccC
Q 041497 111 FEASN 115 (568)
Q Consensus 111 L~l~~ 115 (568)
|.+..
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 65554
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.52 E-value=0.32 Score=26.89 Aligned_cols=19 Identities=47% Similarity=0.613 Sum_probs=9.9
Q ss_pred CCCCEEeCCCCccccCcCc
Q 041497 515 KSITELDLSRNNLSGHIPQ 533 (568)
Q Consensus 515 ~~L~~L~l~~n~l~~~~~~ 533 (568)
++|++|++++|.+....+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555556666555544333
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.52 E-value=0.32 Score=26.89 Aligned_cols=19 Identities=47% Similarity=0.613 Sum_probs=9.9
Q ss_pred CCCCEEeCCCCccccCcCc
Q 041497 515 KSITELDLSRNNLSGHIPQ 533 (568)
Q Consensus 515 ~~L~~L~l~~n~l~~~~~~ 533 (568)
++|++|++++|.+....+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555556666555544333
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.22 E-value=0.1 Score=28.30 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=5.6
Q ss_pred CCCCEEeCCCCccc
Q 041497 515 KSITELDLSRNNLS 528 (568)
Q Consensus 515 ~~L~~L~l~~n~l~ 528 (568)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444455444444
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.37 E-value=0.37 Score=26.63 Aligned_cols=16 Identities=19% Similarity=0.303 Sum_probs=9.4
Q ss_pred cccceeeccccccccc
Q 041497 491 TSLEYLCMQDNSFTGS 506 (568)
Q Consensus 491 ~~L~~L~Ls~n~l~~~ 506 (568)
++|+.|+|++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666633
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.37 E-value=0.37 Score=26.63 Aligned_cols=16 Identities=19% Similarity=0.303 Sum_probs=9.4
Q ss_pred cccceeeccccccccc
Q 041497 491 TSLEYLCMQDNSFTGS 506 (568)
Q Consensus 491 ~~L~~L~Ls~n~l~~~ 506 (568)
++|+.|+|++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666633
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.96 E-value=4.7 Score=22.32 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=9.4
Q ss_pred CCCCEEeCCCCccc
Q 041497 515 KSITELDLSRNNLS 528 (568)
Q Consensus 515 ~~L~~L~l~~n~l~ 528 (568)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45677777777665
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.48 E-value=4 Score=22.56 Aligned_cols=17 Identities=29% Similarity=0.640 Sum_probs=9.4
Q ss_pred CCcEEecCCCcccccCCC
Q 041497 469 NLVSLDISSNMFSGEIPT 486 (568)
Q Consensus 469 ~L~~L~ls~n~l~~~~~~ 486 (568)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4556666666655 4443
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.00 E-value=4.4 Score=22.81 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=8.0
Q ss_pred ccCCeeecccCccc
Q 041497 539 SFLSFLNLSYNHFE 552 (568)
Q Consensus 539 ~~L~~L~l~~n~i~ 552 (568)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35566666666554
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.08 E-value=3.1 Score=42.28 Aligned_cols=63 Identities=24% Similarity=0.228 Sum_probs=41.6
Q ss_pred cCCCCcEEecCCCcccccCCCcc---c-ccccceeecccccccccCCccCc--CCCCCCEEeCCCCcccc
Q 041497 466 KLKNLVSLDISSNMFSGEIPTTL---G-CTSLEYLCMQDNSFTGSIPSTLS--SLKSITELDLSRNNLSG 529 (568)
Q Consensus 466 ~l~~L~~L~ls~n~l~~~~~~~~---~-~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~ 529 (568)
+.+.+..++|++|++. .+.... . .+.|..|+|++|...-.....+. +...|++|-+.||++..
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 5678888999999876 222221 1 79999999999932211112222 23568999999999864
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.62 E-value=13 Score=37.99 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=39.4
Q ss_pred cCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccC--cccCcCchhhhcccccceEEEcccCcccC
Q 041497 271 GGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSN--RFGAVLPFSLANLSTTMTGIAFGNNQISG 343 (568)
Q Consensus 271 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~l~~L~l~~~~l~~ 343 (568)
...+.+..+++++|++..+.. +.......|.|+.|+|++| .+.......-.+.. .+++|.+.+|+++.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~----~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDA----LSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhh----hhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCcccc
Confidence 356777888888888776543 2333455677888888887 22221111111111 26777777777654
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=46.27 E-value=14 Score=20.21 Aligned_cols=12 Identities=42% Similarity=0.476 Sum_probs=6.8
Q ss_pred CCCcEEecCCCc
Q 041497 468 KNLVSLDISSNM 479 (568)
Q Consensus 468 ~~L~~L~ls~n~ 479 (568)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455666666653
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=44.70 E-value=1.5e+02 Score=30.23 Aligned_cols=279 Identities=17% Similarity=0.063 Sum_probs=0.0
Q ss_pred CcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccc------------------------cc
Q 041497 276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLST------------------------TM 331 (568)
Q Consensus 276 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~------------------------~l 331 (568)
++.+.+.-|-+...-.............+.++.++++.|.+....+..+..... -+
T Consensus 137 l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~l 216 (553)
T KOG4242|consen 137 LPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWL 216 (553)
T ss_pred CCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccc
Q ss_pred eEEEcccCcccCCCChhhhhhcc---ccccCccccccchhh---------ccCCCeeECccC--------ccccccCccc
Q 041497 332 TGIAFGNNQISGFIPDGIANLVN---LNALGVEFNQLAVTI---------LKSLQMLFLHEN--------VLQGTIPSFL 391 (568)
Q Consensus 332 ~~L~l~~~~l~~~~~~~~~~~~~---L~~l~l~~~~~~~~~---------~~~L~~L~l~~~--------~~~~~~~~~~ 391 (568)
++++++.|...+.+|.....+.. ++.++.+...+.... -..++..+++.| ...+...+.|
T Consensus 217 teldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~f 296 (553)
T KOG4242|consen 217 TELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTF 296 (553)
T ss_pred cccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccccc
Q ss_pred cCcccccccccccccccCC------CCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhh
Q 041497 392 GNLTMLTQRLLEVNDLLGN------IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVG 465 (568)
Q Consensus 392 ~~~~~L~~L~l~~~~~~~~------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~ 465 (568)
..-+++ +|++..+..-.+ ...+-..-+.=-.+++..|...+.....-+....-++++..+.|.+.+.......
T Consensus 297 S~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk 375 (553)
T KOG4242|consen 297 SPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGK 375 (553)
T ss_pred CcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccc
Q ss_pred --cCCCCcEEecCCC-----cccccCCCccc-----ccccceeecccccccc---cCCccCcCCCCCCEEeCCCCcccc-
Q 041497 466 --KLKNLVSLDISSN-----MFSGEIPTTLG-----CTSLEYLCMQDNSFTG---SIPSTLSSLKSITELDLSRNNLSG- 529 (568)
Q Consensus 466 --~l~~L~~L~ls~n-----~l~~~~~~~~~-----~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~- 529 (568)
.-+..+.+++.+- ...+....... ..-+..+.++.|.... ..-.....-+.+..||+++|....
T Consensus 376 ~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~ 455 (553)
T KOG4242|consen 376 RKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDG 455 (553)
T ss_pred eeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccC
Q ss_pred ---CcCccccccccCCeeecccCcccccC
Q 041497 530 ---HIPQYLENLSFLSFLNLSYNHFESKS 555 (568)
Q Consensus 530 ---~~~~~~~~l~~L~~L~l~~n~i~~~~ 555 (568)
.+|..+..-..++.+..+.|....-+
T Consensus 456 gap~lpkalq~n~rlr~ipds~n~p~~~g 484 (553)
T KOG4242|consen 456 GAPPLPKALQSNCRLRPIPDSLNLPEDPG 484 (553)
T ss_pred CCCcCccccCCCCccCCCCCCCCCccccc
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.69 E-value=36 Score=42.32 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=15.4
Q ss_pred ecCCCcccccCCCccc-ccccceeeccccccc
Q 041497 474 DISSNMFSGEIPTTLG-CTSLEYLCMQDNSFT 504 (568)
Q Consensus 474 ~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~ 504 (568)
||++|+|+...+..|. +.+|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 3455555533333443 555555555555543
No 94
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=23.77 E-value=59 Score=29.02 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=2.7
Q ss_pred ecCCCcc
Q 041497 474 DISSNMF 480 (568)
Q Consensus 474 ~ls~n~l 480 (568)
+|++|.+
T Consensus 262 dLencnl 268 (302)
T KOG1665|consen 262 DLENCNL 268 (302)
T ss_pred ccccCCC
Confidence 3333333
Done!