Query 041497
Match_columns 568
No_of_seqs 212 out of 2926
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 12:58:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.7E-67 2.3E-71 569.3 40.7 555 1-562 20-727 (768)
2 3rgz_A Protein brassinosteroid 100.0 2E-57 6.7E-62 494.8 31.0 513 32-556 124-744 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 9.5E-56 3.3E-60 477.6 42.3 531 34-566 25-636 (680)
4 3t6q_A CD180 antigen; protein- 100.0 1.4E-54 4.8E-59 462.3 37.9 521 25-559 15-567 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 3.2E-53 1.1E-57 451.8 34.3 523 19-559 4-565 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-51 5.1E-56 444.8 41.4 510 38-559 8-604 (680)
7 3t6q_A CD180 antigen; protein- 100.0 1.6E-50 5.6E-55 430.9 35.4 512 38-567 16-551 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-50 4.4E-55 445.7 32.5 517 24-559 16-567 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 8.4E-49 2.9E-53 417.7 31.1 504 37-561 14-542 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 9.3E-48 3.2E-52 406.9 31.5 499 34-566 28-545 (570)
11 2z81_A CD282 antigen, TOLL-lik 100.0 8.9E-48 3.1E-52 405.0 28.2 489 21-558 3-516 (549)
12 4eco_A Uncharacterized protein 100.0 2.1E-48 7.2E-53 414.1 20.8 462 10-529 55-601 (636)
13 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-46 5.6E-51 413.0 36.5 501 38-562 8-549 (844)
14 4g8a_A TOLL-like receptor 4; l 100.0 7.7E-47 2.6E-51 405.5 29.5 544 6-566 7-593 (635)
15 4ecn_A Leucine-rich repeat pro 100.0 1.1E-46 3.7E-51 406.9 27.9 488 1-556 277-870 (876)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-45 5.1E-50 385.1 20.2 469 37-565 3-494 (520)
17 2z81_A CD282 antigen, TOLL-lik 100.0 3.4E-44 1.2E-48 377.7 27.3 464 33-532 25-514 (549)
18 2z63_A TOLL-like receptor 4, v 100.0 3.3E-44 1.1E-48 379.8 24.8 473 58-567 28-522 (570)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-42 1.1E-46 362.8 20.9 466 36-560 33-518 (562)
20 4ecn_A Leucine-rich repeat pro 100.0 5.9E-41 2E-45 362.2 24.0 445 58-558 323-846 (876)
21 4eco_A Uncharacterized protein 100.0 4.2E-42 1.4E-46 365.7 14.3 455 58-557 81-605 (636)
22 2z7x_B TOLL-like receptor 1, v 100.0 5.4E-41 1.9E-45 350.6 21.9 436 34-530 21-483 (520)
23 4g8a_A TOLL-like receptor 4; l 100.0 5E-40 1.7E-44 352.5 29.9 512 39-566 36-570 (635)
24 3v47_A TOLL-like receptor 5B a 100.0 1.9E-38 6.5E-43 325.8 27.4 397 62-565 14-421 (455)
25 3v47_A TOLL-like receptor 5B a 100.0 3.7E-37 1.3E-41 316.2 28.7 369 58-532 30-412 (455)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.6E-37 9E-42 325.3 26.5 435 34-530 52-512 (562)
27 1jl5_A Outer protein YOPM; leu 100.0 7.8E-37 2.7E-41 310.9 19.3 410 57-559 10-436 (454)
28 1ogq_A PGIP-2, polygalacturona 100.0 6.6E-37 2.3E-41 296.9 15.4 280 1-285 14-302 (313)
29 1jl5_A Outer protein YOPM; leu 100.0 1.7E-35 5.6E-40 301.2 23.9 411 33-537 10-438 (454)
30 2id5_A Lingo-1, leucine rich r 100.0 2.1E-34 7.1E-39 297.3 24.1 308 226-559 32-340 (477)
31 3bz5_A Internalin-J, INLJ; leu 100.0 9.4E-34 3.2E-38 288.5 26.4 357 53-487 37-393 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-33 7.5E-38 285.8 26.3 363 70-533 30-392 (457)
33 1o6v_A Internalin A; bacterial 100.0 1.1E-32 3.6E-37 283.2 30.1 345 56-504 44-388 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 6.7E-33 2.3E-37 286.0 26.6 312 24-343 13-334 (477)
35 1o6v_A Internalin A; bacterial 100.0 1.8E-32 6.2E-37 281.4 28.2 345 33-433 45-389 (466)
36 3o6n_A APL1; leucine-rich repe 100.0 3.1E-32 1.1E-36 273.3 23.6 310 34-386 45-354 (390)
37 3o6n_A APL1; leucine-rich repe 100.0 9.2E-32 3.1E-36 269.9 20.7 310 201-556 45-356 (390)
38 3oja_B Anopheles plasmodium-re 100.0 5.2E-31 1.8E-35 278.8 24.8 334 10-386 7-360 (597)
39 4fmz_A Internalin; leucine ric 100.0 8.4E-31 2.9E-35 258.7 23.2 308 196-552 39-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 3.7E-30 1.3E-34 254.1 26.8 304 32-365 42-345 (347)
41 3oja_B Anopheles plasmodium-re 100.0 3.5E-31 1.2E-35 280.1 19.0 313 200-557 50-363 (597)
42 2ft3_A Biglycan; proteoglycan, 100.0 5.2E-29 1.8E-33 244.0 25.2 288 59-364 34-331 (332)
43 1xku_A Decorin; proteoglycan, 100.0 8.1E-29 2.8E-33 242.5 25.6 289 36-364 33-330 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.6E-28 8.8E-33 239.1 24.5 287 202-550 34-331 (332)
45 1z7x_W Ribonuclease inhibitor; 100.0 4.1E-33 1.4E-37 286.6 -10.3 315 227-556 86-444 (461)
46 1xku_A Decorin; proteoglycan, 100.0 4.4E-28 1.5E-32 237.3 25.8 243 20-270 29-283 (330)
47 4fcg_A Uncharacterized protein 100.0 6.6E-30 2.3E-34 249.0 12.6 267 2-288 36-315 (328)
48 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-31 4.5E-36 275.4 -4.0 351 201-554 3-413 (461)
49 1ogq_A PGIP-2, polygalacturona 100.0 4.3E-29 1.5E-33 241.9 13.3 248 58-315 50-302 (313)
50 4fcg_A Uncharacterized protein 99.9 7E-28 2.4E-32 234.7 12.6 290 2-320 22-317 (328)
51 2z80_A TOLL-like receptor 2, v 99.9 3.8E-27 1.3E-31 232.8 17.7 285 14-319 22-316 (353)
52 3ogk_B Coronatine-insensitive 99.9 1.3E-29 4.6E-34 268.9 -2.6 455 19-524 39-547 (592)
53 2z80_A TOLL-like receptor 2, v 99.9 3.8E-27 1.3E-31 232.9 14.6 278 228-558 33-320 (353)
54 2z66_A Variable lymphocyte rec 99.9 1.7E-26 5.7E-31 223.6 16.1 251 278-558 11-267 (306)
55 2z66_A Variable lymphocyte rec 99.9 2.6E-26 8.8E-31 222.2 15.9 230 58-289 28-263 (306)
56 3zyj_A Leucine-rich repeat-con 99.9 1.9E-25 6.4E-30 227.5 20.4 253 252-559 45-299 (440)
57 3ogk_B Coronatine-insensitive 99.9 1.7E-28 5.7E-33 260.5 -2.9 389 152-548 110-547 (592)
58 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-25 4.1E-30 215.1 17.1 185 373-558 58-244 (285)
59 3zyi_A Leucine-rich repeat-con 99.9 2.1E-25 7.1E-30 228.0 19.9 253 252-559 56-310 (452)
60 3zyi_A Leucine-rich repeat-con 99.9 5.5E-25 1.9E-29 224.8 22.3 228 58-317 75-303 (452)
61 1ozn_A Reticulon 4 receptor; N 99.9 7.2E-25 2.5E-29 209.7 20.2 223 37-286 14-237 (285)
62 3zyj_A Leucine-rich repeat-con 99.9 9.8E-25 3.3E-29 222.2 22.1 245 38-317 47-292 (440)
63 1wwl_A Monocyte differentiatio 99.9 4.9E-27 1.7E-31 227.5 2.7 248 34-318 43-310 (312)
64 3g06_A SSPH2 (leucine-rich rep 99.9 5.9E-24 2E-28 222.5 21.3 291 10-353 10-308 (622)
65 2p1m_B Transport inhibitor res 99.9 1.2E-27 4E-32 254.2 -9.4 438 62-525 47-541 (594)
66 2p1m_B Transport inhibitor res 99.9 1.8E-27 6.3E-32 252.7 -8.4 453 19-502 32-542 (594)
67 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-25 1.1E-29 215.3 7.5 264 252-556 12-280 (317)
68 2o6q_A Variable lymphocyte rec 99.9 2.6E-23 9E-28 196.9 20.5 167 19-189 2-168 (270)
69 1wwl_A Monocyte differentiatio 99.9 1E-25 3.4E-30 218.3 3.9 247 80-343 41-310 (312)
70 2o6q_A Variable lymphocyte rec 99.9 1.1E-23 3.6E-28 199.6 16.9 213 331-565 18-231 (270)
71 3oja_A Leucine-rich immune mol 99.9 6.8E-25 2.3E-29 225.2 9.3 244 305-559 35-289 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 1.1E-23 3.7E-28 200.5 16.6 214 331-564 30-249 (276)
73 3o53_A Protein LRIM1, AGAP0063 99.9 3.6E-25 1.2E-29 214.9 6.0 241 34-317 10-250 (317)
74 3g06_A SSPH2 (leucine-rich rep 99.9 7.7E-23 2.6E-27 214.1 22.7 268 202-539 41-308 (622)
75 2z62_A TOLL-like receptor 4, v 99.9 2.1E-22 7.3E-27 191.5 18.2 206 58-265 28-239 (276)
76 1p9a_G Platelet glycoprotein I 99.9 1.8E-22 6.3E-27 192.7 14.2 183 370-557 30-213 (290)
77 3oja_A Leucine-rich immune mol 99.9 3.2E-22 1.1E-26 205.3 15.2 218 54-286 30-249 (487)
78 3rfs_A Internalin B, repeat mo 99.9 1E-21 3.4E-26 186.1 15.6 182 370-556 40-222 (272)
79 3m19_A Variable lymphocyte rec 99.9 1.3E-21 4.5E-26 183.0 15.4 190 371-564 14-204 (251)
80 3rfs_A Internalin B, repeat mo 99.9 2.6E-21 8.8E-26 183.3 17.1 209 54-274 37-246 (272)
81 1p9a_G Platelet glycoprotein I 99.9 1.6E-20 5.3E-25 179.3 19.5 203 54-287 6-208 (290)
82 3m19_A Variable lymphocyte rec 99.9 9.9E-21 3.4E-25 177.1 17.1 189 20-214 3-192 (251)
83 2ast_B S-phase kinase-associat 99.9 2.2E-23 7.6E-28 204.5 -1.5 270 18-325 33-314 (336)
84 2xwt_C Thyrotropin receptor; s 99.8 9.4E-21 3.2E-25 175.9 15.0 196 59-284 32-236 (239)
85 3goz_A Leucine-rich repeat-con 99.8 2.8E-22 9.5E-27 198.4 2.0 265 39-324 3-304 (362)
86 2xwt_C Thyrotropin receptor; s 99.8 5.9E-20 2E-24 170.5 16.9 197 34-260 31-236 (239)
87 4glp_A Monocyte differentiatio 99.8 9.6E-21 3.3E-25 183.1 11.5 205 82-318 91-308 (310)
88 4glp_A Monocyte differentiatio 99.8 8.5E-21 2.9E-25 183.5 10.9 226 34-287 64-307 (310)
89 3goz_A Leucine-rich repeat-con 99.8 3.5E-22 1.2E-26 197.7 0.9 267 62-350 2-305 (362)
90 1h6u_A Internalin H; cell adhe 99.8 1.1E-19 3.6E-24 175.3 15.3 194 54-263 37-230 (308)
91 2ast_B S-phase kinase-associat 99.8 1.1E-21 3.8E-26 192.4 1.4 257 59-351 48-315 (336)
92 2ca6_A RAN GTPase-activating p 99.8 8.8E-22 3E-26 196.8 -1.4 248 52-320 26-319 (386)
93 1h6u_A Internalin H; cell adhe 99.8 2E-19 6.7E-24 173.4 14.4 210 62-319 23-232 (308)
94 2o6s_A Variable lymphocyte rec 99.8 5.1E-19 1.7E-23 160.4 16.0 182 19-221 4-185 (208)
95 2ca6_A RAN GTPase-activating p 99.8 2.4E-21 8E-26 193.7 0.3 252 74-346 24-320 (386)
96 2v9t_B SLIT homolog 2 protein 99.8 1.5E-18 5.2E-23 158.3 13.5 157 375-559 15-172 (220)
97 4ay9_X Follicle-stimulating ho 99.8 6.6E-18 2.3E-22 166.0 18.6 220 58-313 30-255 (350)
98 4ay9_X Follicle-stimulating ho 99.8 2.1E-18 7.3E-23 169.5 15.0 240 63-340 14-257 (350)
99 2xot_A Amphoterin-induced prot 99.8 4.3E-19 1.5E-23 175.2 9.0 182 374-559 21-209 (361)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-18 6.3E-23 157.8 12.3 138 421-559 34-173 (220)
101 2o6s_A Variable lymphocyte rec 99.8 7.8E-18 2.7E-22 152.6 15.7 177 61-248 10-187 (208)
102 3e6j_A Variable lymphocyte rec 99.8 5.6E-18 1.9E-22 155.7 14.8 165 13-193 10-174 (229)
103 3e6j_A Variable lymphocyte rec 99.8 2.8E-18 9.5E-23 157.7 12.4 144 419-564 40-184 (229)
104 3cvr_A Invasion plasmid antige 99.8 7.4E-19 2.5E-23 181.7 8.3 213 11-270 32-250 (571)
105 1h6t_A Internalin B; cell adhe 99.8 4.5E-18 1.5E-22 162.4 12.5 172 370-555 45-216 (291)
106 2v9t_B SLIT homolog 2 protein 99.7 1.3E-17 4.4E-22 152.1 13.7 135 58-192 32-166 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 3.6E-17 1.2E-21 149.1 12.8 153 38-193 15-168 (220)
108 1m9s_A Internalin B; cell inva 99.7 3.4E-17 1.1E-21 171.3 13.9 182 334-529 26-211 (605)
109 1h6t_A Internalin B; cell adhe 99.7 8.5E-17 2.9E-21 153.5 14.9 185 40-240 30-214 (291)
110 3cvr_A Invasion plasmid antige 99.7 2.9E-17 9.9E-22 169.8 12.0 185 330-538 60-253 (571)
111 2xot_A Amphoterin-induced prot 99.7 3.2E-17 1.1E-21 161.8 11.8 154 59-213 40-201 (361)
112 4ezg_A Putative uncharacterize 99.7 5.7E-17 2E-21 145.3 11.9 149 34-190 44-193 (197)
113 1m9s_A Internalin B; cell inva 99.7 4.8E-17 1.6E-21 170.1 12.4 163 39-214 26-188 (605)
114 4ezg_A Putative uncharacterize 99.7 6.8E-17 2.3E-21 144.8 10.6 153 54-213 40-193 (197)
115 1w8a_A SLIT protein; signaling 99.7 1.3E-16 4.6E-21 142.1 10.8 112 447-558 32-145 (192)
116 1xeu_A Internalin C; cellular 99.7 5.1E-17 1.7E-21 152.5 7.2 168 351-531 17-188 (263)
117 1xeu_A Internalin C; cellular 99.6 9.1E-16 3.1E-20 144.0 12.9 166 35-214 20-185 (263)
118 2wfh_A SLIT homolog 2 protein 99.6 9.7E-16 3.3E-20 136.4 12.0 112 447-559 34-146 (193)
119 3sb4_A Hypothetical leucine ri 99.6 1.9E-16 6.4E-21 154.3 7.4 261 34-311 25-328 (329)
120 3sb4_A Hypothetical leucine ri 99.6 2.2E-16 7.4E-21 153.8 6.1 286 56-359 23-327 (329)
121 1dce_A Protein (RAB geranylger 99.6 1.2E-17 4E-22 173.7 -3.8 108 447-559 444-553 (567)
122 1dce_A Protein (RAB geranylger 99.6 3.9E-17 1.3E-21 169.8 -0.9 121 420-546 442-567 (567)
123 2o6r_A Variable lymphocyte rec 99.6 1.9E-15 6.4E-20 132.9 9.1 112 447-558 31-143 (177)
124 4b8c_D Glucose-repressible alc 99.6 3.1E-16 1E-20 168.3 4.6 203 19-236 160-369 (727)
125 2ell_A Acidic leucine-rich nuc 99.6 2.8E-15 9.5E-20 130.6 9.8 132 34-167 24-160 (168)
126 4fdw_A Leucine rich hypothetic 99.6 1.1E-13 3.8E-18 137.5 22.5 267 55-341 110-382 (401)
127 2ell_A Acidic leucine-rich nuc 99.6 2.7E-15 9.3E-20 130.7 9.7 135 419-556 24-164 (168)
128 4fs7_A Uncharacterized protein 99.6 9.6E-14 3.3E-18 138.6 20.7 226 46-283 59-285 (394)
129 4fdw_A Leucine rich hypothetic 99.6 1.3E-13 4.5E-18 136.9 21.4 253 46-316 124-382 (401)
130 1w8a_A SLIT protein; signaling 99.6 1.5E-14 5.2E-19 128.7 12.1 129 37-168 11-140 (192)
131 2je0_A Acidic leucine-rich nuc 99.6 4.9E-15 1.7E-19 126.2 8.3 127 58-186 17-148 (149)
132 2je0_A Acidic leucine-rich nuc 99.6 4.1E-15 1.4E-19 126.7 6.9 129 33-163 16-149 (149)
133 3g39_A Variable lymphocyte rec 99.5 9.8E-15 3.3E-19 127.0 9.0 116 447-565 12-128 (170)
134 2wfh_A SLIT homolog 2 protein 99.5 8.2E-14 2.8E-18 123.9 13.5 126 38-167 14-139 (193)
135 4fs7_A Uncharacterized protein 99.5 5.7E-13 2E-17 133.0 20.8 101 462-567 291-392 (394)
136 4b8c_D Glucose-repressible alc 99.5 3.7E-15 1.3E-19 159.9 4.5 192 58-260 173-369 (727)
137 2r9u_A Variable lymphocyte rec 99.5 2.7E-14 9.3E-19 124.6 9.2 115 447-564 15-130 (174)
138 2o6r_A Variable lymphocyte rec 99.5 2.3E-13 7.7E-18 119.5 14.3 111 58-168 28-138 (177)
139 1a9n_A U2A', U2A'; complex (nu 99.5 4.6E-14 1.6E-18 123.8 7.9 134 415-554 15-155 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.5 9.6E-14 3.3E-18 121.7 7.7 132 54-191 15-153 (176)
141 1ds9_A Outer arm dynein; leuci 99.4 2.4E-15 8.1E-20 134.8 -3.4 154 392-553 15-186 (198)
142 1ds9_A Outer arm dynein; leuci 99.4 2.2E-15 7.4E-20 135.1 -7.2 112 77-193 43-155 (198)
143 4gt6_A Cell surface protein; l 99.4 5.7E-11 2E-15 118.5 22.3 321 47-406 52-389 (394)
144 3g39_A Variable lymphocyte rec 99.3 7.7E-12 2.6E-16 108.6 11.5 86 82-167 30-115 (170)
145 4gt6_A Cell surface protein; l 99.3 1.3E-10 4.5E-15 115.8 21.5 88 459-551 302-390 (394)
146 2r9u_A Variable lymphocyte rec 99.3 1.5E-11 5E-16 107.2 11.5 86 82-167 33-118 (174)
147 3un9_A NLR family member X1; l 99.3 1.9E-13 6.6E-18 134.4 -3.2 188 366-553 67-284 (372)
148 2ifg_A High affinity nerve gro 99.3 7.9E-12 2.7E-16 122.6 8.3 108 448-558 12-122 (347)
149 3un9_A NLR family member X1; l 99.2 2.4E-13 8.2E-18 133.7 -5.9 134 419-552 101-252 (372)
150 4h09_A Hypothetical leucine ri 99.1 4.6E-09 1.6E-13 104.1 19.5 146 389-540 211-357 (379)
151 4h09_A Hypothetical leucine ri 99.0 3.1E-08 1.1E-12 98.1 21.5 288 54-362 42-342 (379)
152 2ifg_A High affinity nerve gro 99.0 1.1E-09 3.6E-14 107.3 10.2 96 45-143 20-116 (347)
153 2ra8_A Uncharacterized protein 98.7 4.3E-09 1.5E-13 102.4 2.2 59 370-431 138-205 (362)
154 2ra8_A Uncharacterized protein 98.7 1.1E-08 3.6E-13 99.7 4.6 65 224-288 250-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 3.5E-08 1.2E-12 86.5 0.9 93 462-554 59-166 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 1.5E-08 5.2E-13 88.9 -1.9 92 52-143 30-136 (185)
157 3rw6_A Nuclear RNA export fact 98.3 3.6E-08 1.2E-12 90.8 -1.4 81 103-185 167-258 (267)
158 3rw6_A Nuclear RNA export fact 98.3 4E-07 1.4E-11 83.8 3.9 80 465-545 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.3 1.1E-07 3.7E-12 81.1 -0.3 83 447-529 64-154 (176)
160 3e4g_A ATP synthase subunit S, 98.1 6E-07 2.1E-11 76.5 1.5 84 82-165 61-150 (176)
161 3rfe_A Platelet glycoprotein I 97.7 5.3E-05 1.8E-09 61.5 5.9 61 495-557 12-73 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 3.7E-05 1.3E-09 66.7 2.4 92 461-552 63-170 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00041 1.4E-08 60.2 2.9 86 54-139 37-135 (197)
164 3rfe_A Platelet glycoprotein I 96.7 0.0023 7.8E-08 51.7 6.0 57 471-528 11-68 (130)
165 2lz0_A Uncharacterized protein 72.4 7.9 0.00027 28.9 5.7 44 94-138 8-51 (100)
166 2lz0_A Uncharacterized protein 71.7 4 0.00014 30.6 3.9 46 479-525 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.7e-67 Score=569.28 Aligned_cols=555 Identities=29% Similarity=0.455 Sum_probs=409.5
Q ss_pred CcccCCCCCCCCCCCCCCCCCceeeeceeCCCCCeEEEEeccCCccccc---cC-----------------------Ccc
Q 041497 1 MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGF---LS-----------------------PFV 54 (568)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~---~~-----------------------~~~ 54 (568)
||+++.||. +++.|+.+.+||.|.||.|. ..+|+.|||+++.+.+. .+ ..+
T Consensus 20 ~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~ 96 (768)
T 3rgz_A 20 FKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF 96 (768)
T ss_dssp HHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCC
T ss_pred HHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhh
Confidence 789999999 99999988899999999997 57999999999887764 22 467
Q ss_pred cCCCCCceeeccCCcccccCCc--ccCCCCCCcEEeCCCCcCCCCCCccc-ccCCCCcEEeccCCcccccCchh---hcC
Q 041497 55 GNLSFLRSINLANNSFRAEIPH--EVGNLFRLQNLTLTNNYFSGKIPTNL-SRCSNLVKFEASNNKLAGESPAE---IGN 128 (568)
Q Consensus 55 ~~~~~L~~L~ls~~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~---~~~ 128 (568)
.++++|++|++++|.+.+.+|. .++++++|++|++++|.+++..|..+ .++++|++|++++|++++..+.. +.+
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp CCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred ccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 8889999999999999888888 88999999999999998876666655 67788888888888777655544 444
Q ss_pred ----------------------cCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeec
Q 041497 129 ----------------------LLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVG 186 (568)
Q Consensus 129 ----------------------l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 186 (568)
+++|++|++++|.+.+..|. ++++++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 45555555555555544444 6666777777777776666666666777777777777
Q ss_pred ccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccc
Q 041497 187 LNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKV 266 (568)
Q Consensus 187 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~ 266 (568)
+|.+.+..+.. .+++|+.|++++|.+.+.+|..++..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..
T Consensus 256 ~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 334 (768)
T 3rgz_A 256 SNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334 (768)
T ss_dssp SSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence 77766555533 66777777777777777777777655588888888888888777888888888888888888887555
Q ss_pred cCC-ccCCCCCcEEECCCCCCCCcCCCCchh-------------------hhcccC--CCcccEEEeccCcccCcCchhh
Q 041497 267 SIN-FGGLQNLSWLNLGKNNLGTRTANDLDF-------------------ITLLTN--CTKLEVLVLDSNRFGAVLPFSL 324 (568)
Q Consensus 267 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-------------------~~~l~~--~~~L~~L~l~~~~~~~~~~~~~ 324 (568)
|.. +..+++|++|++++|.+....+..+.- ...+.. +++|+.|++++|.+++..+..+
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 543 777888888888888776433321110 001111 4456666666666665555555
Q ss_pred hcccccceEEEcccCcccCCCChhhhhhccccccCccccccchh------hccCCCeeECccCccccccCccccCccccc
Q 041497 325 ANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENVLQGTIPSFLGNLTMLT 398 (568)
Q Consensus 325 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 398 (568)
..... ++.|++++|.+++..|..+..+++|+.|+++.|.+... .+++|++|++++|.+++..+..+..+++|+
T Consensus 415 ~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 415 SNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp GGCTT-CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred hcCCC-CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 55543 77777777777766777777777777777777766532 266777777777777777777777777777
Q ss_pred ccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhh--------------
Q 041497 399 QRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-------------- 464 (568)
Q Consensus 399 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l-------------- 464 (568)
.|++++|++++..|.++..+++|++|++++|++.+.+|..+..+..+ +.+++++|.+++..|..+
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 77777777777777777777777777777777777777777777666 777777777766555433
Q ss_pred --------------------------------------------------------hcCCCCcEEecCCCcccccCCCcc
Q 041497 465 --------------------------------------------------------GKLKNLVSLDISSNMFSGEIPTTL 488 (568)
Q Consensus 465 --------------------------------------------------------~~l~~L~~L~ls~n~l~~~~~~~~ 488 (568)
..+++|+.|++++|++++.+|..+
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence 224567788888888888888887
Q ss_pred c-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCcccc
Q 041497 489 G-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFV 562 (568)
Q Consensus 489 ~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~ 562 (568)
+ +++|+.|+|++|++++.+|..++++++|+.||+++|.+++.+|+.+..+++|+.|++++|++++.+|...++.
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 727 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGG
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhc
Confidence 7 8888888888888888888888888888888888888888888888888888888888888888888775543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-57 Score=494.77 Aligned_cols=513 Identities=30% Similarity=0.454 Sum_probs=388.6
Q ss_pred CCCeEEEEeccCCccccccCCcc-cCCCCCceeeccCCcccccCCcc---cC----------------------CCCCCc
Q 041497 32 RHQRVIGLDLRHQSIGGFLSPFV-GNLSFLRSINLANNSFRAEIPHE---VG----------------------NLFRLQ 85 (568)
Q Consensus 32 ~~~~i~~L~l~~~~i~~~~~~~~-~~~~~L~~L~ls~~~~~~~~~~~---~~----------------------~l~~L~ 85 (568)
..+++++|++++|.+.+..+..+ .++++|++|++++|.+++..|.. +. .+++|+
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~ 203 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE 203 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCC
T ss_pred CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCC
Confidence 34567777777776665555443 56666666666666665444433 34 455555
Q ss_pred EEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCC
Q 041497 86 NLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNR 165 (568)
Q Consensus 86 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 165 (568)
+|++++|.+++..|. ++.+++|++|++++|++.+..|..+..+++|++|++++|.+.+..|.. .+++|++|++++|.
T Consensus 204 ~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280 (768)
T ss_dssp EEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSE
T ss_pred EEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCc
Confidence 555555555544443 555556666666666555555555555666666666665555444332 55566666666666
Q ss_pred CCCCCCcccccc-ccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccC
Q 041497 166 LGGRIPSTRSHV-RNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQ 243 (568)
Q Consensus 166 ~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 243 (568)
+.+.+|..+... ++|+.|++++|.+.+..+ .+..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+..|
T Consensus 281 l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p 360 (768)
T 3rgz_A 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360 (768)
T ss_dssp EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence 555566655553 677777777777766555 666777777777777777666666544467777777777777766666
Q ss_pred ccCCCCC-CCCeEecCCCcccccccCCccC--CCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcC
Q 041497 244 DSLSNAT-NLQKLDINRNLFSGKVSINFGG--LQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVL 320 (568)
Q Consensus 244 ~~l~~~~-~L~~L~L~~n~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 320 (568)
..+..++ +|+.|++++|.+.+..+..+.. +++|++|++++|.+....+ ..+..+++|+.|++++|++.+..
T Consensus 361 ~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP------PTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp TTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC------GGGGGCTTCCEEECCSSEEESCC
T ss_pred HHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC------HHHhcCCCCCEEECcCCcccCcc
Confidence 6666665 7777777777776665555544 6778888888887765433 24778999999999999999888
Q ss_pred chhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchh------hccCCCeeECccCccccccCccccCc
Q 041497 321 PFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENVLQGTIPSFLGNL 394 (568)
Q Consensus 321 ~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~ 394 (568)
+..+...+. ++.|++++|.+.+..|..+..+++|+.|++++|.+... .+++|++|++++|.+++..+.++..+
T Consensus 435 p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 435 PSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513 (768)
T ss_dssp CGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cHHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence 888888765 99999999999999999999999999999999988633 28899999999999999999999999
Q ss_pred ccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHH--------------------------------
Q 041497 395 TMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRI-------------------------------- 442 (568)
Q Consensus 395 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-------------------------------- 442 (568)
++|+.|++++|++++..|..+.++++|+.|++++|++.+.+|..+...
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999888777654331
Q ss_pred --------------------------------------hhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccC
Q 041497 443 --------------------------------------ITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEI 484 (568)
Q Consensus 443 --------------------------------------~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 484 (568)
..+ +.|++++|.+++.+|..++.+++|+.|++++|++++.+
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L-~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM-MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC-CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccc-cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 223 78999999999999999999999999999999999999
Q ss_pred CCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCC
Q 041497 485 PTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSL 556 (568)
Q Consensus 485 ~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 556 (568)
|..++ +++|+.|+|++|++++.+|..+.+++.|++||+++|++++.+|+. .++.++....+.||+--|-.|
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTT
T ss_pred ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCC
Confidence 99998 999999999999999999999999999999999999999999974 456777778888997555444
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.5e-56 Score=477.55 Aligned_cols=531 Identities=19% Similarity=0.207 Sum_probs=417.3
Q ss_pred CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497 34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 113 (568)
.++++|++++|.+.+..+..|.++++|++|++++|.+.+..|.+++++++|++|++++|.++...+..|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57999999999999988888999999999999999999888999999999999999999999666667999999999999
Q ss_pred cCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCcccc--ccccCcEEeecccccc
Q 041497 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRS--HVRNLISFNVGLNQFS 191 (568)
Q Consensus 114 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~ 191 (568)
++|++.+..+..|.++++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+. .+++|+.|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999877778899999999999999999988888899999999999999998866555554 4588999999999887
Q ss_pred cCCC-CCCCC---------------------------CCccEEEeecccccccCCCcccCCCC--CcceEeecCCccccc
Q 041497 192 GMFP-PINNI---------------------------SSLEYIFIHRNIYHGSLPLDIGVNLP--NLRFFIISGNNLTGS 241 (568)
Q Consensus 192 ~~~~-~l~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~ 241 (568)
+..+ .+..+ ++|+.|++++|.+.+..+..+. .++ +|++|++++|.+.+.
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEE
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCcc
Confidence 6555 33333 4556666666666544443333 443 388888888887777
Q ss_pred cCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCC-CCch-h-hhcccCCCcccEEEeccCcccC
Q 041497 242 LQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTA-NDLD-F-ITLLTNCTKLEVLVLDSNRFGA 318 (568)
Q Consensus 242 ~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~-~-~~~l~~~~~L~~L~l~~~~~~~ 318 (568)
.+.++..+++|++|++++|.+.+..+..+..+++|+.|+++++....... .... + ...+..+++|+.|++++|.+.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 77777778888888888887776666666666666666666543221000 0000 0 0023344555555555555444
Q ss_pred cCchhhhccc---------------------------ccceEEEcccCcccCCCChhhhhhccccccCccccccch----
Q 041497 319 VLPFSLANLS---------------------------TTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAV---- 367 (568)
Q Consensus 319 ~~~~~~~~~~---------------------------~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~---- 367 (568)
..+..+...+ ..++.|++++|.+.+..+..+..+++|+.|+++.|.+..
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 4333332221 247777788888888888889999999999999998753
Q ss_pred ---hhccCCCeeECccCccccccCccccCccccccccccccccc--CCCCCCccCCCCceEEEcccCCCCCCCCCchhHH
Q 041497 368 ---TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLL--GNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRI 442 (568)
Q Consensus 368 ---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 442 (568)
..+++|+++++++|.+.+..+..+..+++|+.|++++|.+. +..|..+.++++|+.|++++|.+.+..+..+..+
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 23788999999999998888888999999999999999876 4577889999999999999999998777778888
Q ss_pred hhhceEEEccCCcccccCc--------hhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcC
Q 041497 443 ITLSVLLNLSDNLLSGHFP--------AEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSS 513 (568)
Q Consensus 443 ~~l~~~l~Ls~n~l~~~~~--------~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~ 513 (568)
..+ +.|++++|.+++..+ ..+..+++|++|++++|+++...+..+. +++|+.|+|++|+++...+..|..
T Consensus 504 ~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 504 EKL-EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp TTC-CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccc-CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence 887 999999999986432 2378899999999999999844444566 999999999999999877788899
Q ss_pred CCCCCEEeCCCCccccCcCcccc-ccccCCeeecccCcccccCCCCcccccccc
Q 041497 514 LKSITELDLSRNNLSGHIPQYLE-NLSFLSFLNLSYNHFESKSLFVWPFVDEIK 566 (568)
Q Consensus 514 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~ 566 (568)
+++|+.|++++|.+++..+..+. .+++|+.+++++|++.|.|+....+..|++
T Consensus 583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~ 636 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHH
Confidence 99999999999999998888887 899999999999999999997333445543
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-54 Score=462.30 Aligned_cols=521 Identities=18% Similarity=0.146 Sum_probs=417.8
Q ss_pred eeceeCCC---------CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 041497 25 TGVTCGHR---------HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFS 95 (568)
Q Consensus 25 ~~~~c~~~---------~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 95 (568)
..+.|... ...+++||+++|.+.+..+..|.++++|++|++++|.+....|.+|+++++|++|++++|.++
T Consensus 15 ~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 94 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94 (606)
T ss_dssp TEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS
T ss_pred ceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc
Confidence 45778652 256899999999999988889999999999999999998888999999999999999999998
Q ss_pred CCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCcccc
Q 041497 96 GKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRS 175 (568)
Q Consensus 96 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 175 (568)
+..|..|+++++|++|++++|++....+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..+.
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 174 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh
Confidence 88888999999999999999999876678889999999999999999875545556699999999999999877778888
Q ss_pred ccccCc--EEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcc--eEeecCC---ccccccCccCCC
Q 041497 176 HVRNLI--SFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLR--FFIISGN---NLTGSLQDSLSN 248 (568)
Q Consensus 176 ~l~~L~--~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~---~~~~~~~~~l~~ 248 (568)
.+++|+ .|++++|.+.+..+.......|+.|+++++....... ..+..++ .+.+... ......+..+..
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF----KGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHH----HHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHh----hhccccchhheechhhccccccccChhHhch
Confidence 999999 8999999998877755566789999988775211111 1222222 2222111 001111122222
Q ss_pred CC--CCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhc
Q 041497 249 AT--NLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLAN 326 (568)
Q Consensus 249 ~~--~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 326 (568)
+. +|+.+++++|.+.+..+..|+.+++|++|++++|.+...+.. +..+++|++|++++|.+.+..+..+..
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-------l~~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-------LVGLSTLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-------CCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-------hcccccCCEEECccCCcCcCchhhhhc
Confidence 21 577777777777776666677777777777777777654432 566777777777777777766666666
Q ss_pred ccccceEEEcccCcccCCCC-hhhhhhccccccCccccccchh--------hccCCCeeECccCccccccCccccCcccc
Q 041497 327 LSTTMTGIAFGNNQISGFIP-DGIANLVNLNALGVEFNQLAVT--------ILKSLQMLFLHENVLQGTIPSFLGNLTML 397 (568)
Q Consensus 327 ~~~~l~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l~~~~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 397 (568)
.+. ++.|++++|.+.+..+ ..+..+++|+.++++.|.+... .+++|++|++++|.+.+..+..+..+++|
T Consensus 324 l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 324 FPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402 (606)
T ss_dssp CTT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred cCc-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence 544 7777777777764443 4477777888888877776432 27889999999999988888899999999
Q ss_pred cccccccccccCCCCC-CccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCccccc---CchhhhcCCCCcEE
Q 041497 398 TQRLLEVNDLLGNIPP-SIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGH---FPAEVGKLKNLVSL 473 (568)
Q Consensus 398 ~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~---~~~~l~~l~~L~~L 473 (568)
+.|++++|++++..+. .+..+++|++|++++|.+.+..+..+..+..+ +.|++++|.+++. .+..+..+++|++|
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC-CEEECCCCCCCccccccchhhccCCCccEE
Confidence 9999999999876554 48899999999999999998888888888887 9999999999862 33578999999999
Q ss_pred ecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCccc
Q 041497 474 DISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 552 (568)
Q Consensus 474 ~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 552 (568)
++++|++++..|..+. +++|+.|++++|++++..|..+.+++.| .|++++|.+++..|+.+..+++|+.+++++|++.
T Consensus 482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred ECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 9999999988888887 9999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 041497 553 SKSLFVW 559 (568)
Q Consensus 553 ~~~~~~~ 559 (568)
|.|+..|
T Consensus 561 c~c~~~~ 567 (606)
T 3t6q_A 561 CTCSNIY 567 (606)
T ss_dssp CSGGGHH
T ss_pred ccCCcHH
Confidence 9999664
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.2e-53 Score=451.78 Aligned_cols=523 Identities=20% Similarity=0.186 Sum_probs=427.3
Q ss_pred CCCcee----eeceeCCC---------CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCc
Q 041497 19 INLCQW----TGVTCGHR---------HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQ 85 (568)
Q Consensus 19 ~~~c~~----~~~~c~~~---------~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~ 85 (568)
.++|.+ ..+.|.++ ..++++|++++|.+.+..+..|.++++|++|++++|.+++..|.+|.++++|+
T Consensus 4 ~~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~ 83 (606)
T 3vq2_A 4 LNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83 (606)
T ss_dssp --CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence 445665 35778652 26789999999999998888999999999999999999988888999999999
Q ss_pred EEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCC-CCCcccCCCCCCCeEEeccC
Q 041497 86 NLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRG-QLPASIGNLSALQEINVNGN 164 (568)
Q Consensus 86 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~ 164 (568)
+|++++|.+++..|..|+++++|++|++++|++....+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|
T Consensus 84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 99999999998889999999999999999999987776889999999999999999986 56899999999999999999
Q ss_pred CCCCCCCccccccccCc----EEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCcccc
Q 041497 165 RLGGRIPSTRSHVRNLI----SFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTG 240 (568)
Q Consensus 165 ~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 240 (568)
.+.+..+..+..+++|+ .+++++|.+....+......+|+.|++++|.+.+.........++.++.+++..+.+..
T Consensus 164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred cceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence 99877777787777665 89999999987777444455899999999987644333344477888877775443321
Q ss_pred c------cCccCCCCC--CCCeEec-CCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEe
Q 041497 241 S------LQDSLSNAT--NLQKLDI-NRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVL 311 (568)
Q Consensus 241 ~------~~~~l~~~~--~L~~L~L-~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 311 (568)
. ....+..+. .++.+++ ..+.+.+..+. +..+++|+.|+++++.+...+ .+..+++|+.|++
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--------~l~~~~~L~~L~l 314 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--------DVPKHFKWQSLSI 314 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--------CCCTTCCCSEEEE
T ss_pred CCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh--------hccccccCCEEEc
Confidence 1 111111111 3556666 55666666665 778888888888888876654 2667788888888
Q ss_pred ccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchh--------hccCCCeeECccCcc
Q 041497 312 DSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT--------ILKSLQMLFLHENVL 383 (568)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~--------~~~~L~~L~l~~~~~ 383 (568)
++|.+..+ + .+ .. ++++.|++++|...+.. .+..+++|+.+++++|.+... .+++|++|++++|.+
T Consensus 315 ~~n~l~~l-p-~~-~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 388 (606)
T 3vq2_A 315 IRCQLKQF-P-TL-DL-PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388 (606)
T ss_dssp ESCCCSSC-C-CC-CC-SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE
T ss_pred ccccCccc-c-cC-CC-CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc
Confidence 88888443 3 22 33 44888888888544332 566788888888888877543 278999999999998
Q ss_pred ccccCccccCcccccccccccccccCCCC-CCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccc-cCc
Q 041497 384 QGTIPSFLGNLTMLTQRLLEVNDLLGNIP-PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSG-HFP 461 (568)
Q Consensus 384 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~-~~~ 461 (568)
++ .+..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+..+ +.|++++|.+++ ..|
T Consensus 389 ~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~ 466 (606)
T 3vq2_A 389 II-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-NTLKMAGNSFKDNTLS 466 (606)
T ss_dssp EE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEEC
T ss_pred cc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC-CEEECCCCcCCCcchH
Confidence 85 55789999999999999999988777 688999999999999999999888888888888 999999999997 468
Q ss_pred hhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccc-
Q 041497 462 AEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS- 539 (568)
Q Consensus 462 ~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 539 (568)
..+..+++|++|++++|++++..|..+. +++|+.|++++|++++..|..|.++++|++|++++|.++. +|..+..++
T Consensus 467 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~ 545 (606)
T 3vq2_A 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPK 545 (606)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCT
T ss_pred HhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcc
Confidence 8899999999999999999988888887 9999999999999998889999999999999999999994 666688887
Q ss_pred cCCeeecccCcccccCCCCc
Q 041497 540 FLSFLNLSYNHFESKSLFVW 559 (568)
Q Consensus 540 ~L~~L~l~~n~i~~~~~~~~ 559 (568)
+|+.|++++|++.|.|+..|
T Consensus 546 ~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 546 SLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp TCCEEECCSCCCCCSSTTHH
T ss_pred cCcEEEccCCCcccCCccHH
Confidence 69999999999999999764
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-51 Score=444.79 Aligned_cols=510 Identities=19% Similarity=0.185 Sum_probs=386.9
Q ss_pred EEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCc
Q 041497 38 GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 117 (568)
Q Consensus 38 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 117 (568)
.+|.+++.+..++ ..+. +++++|++++|.+++..+.+|.++++|++|++++|.+++..|..|+++++|++|++++|+
T Consensus 8 ~~~cs~~~L~~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQVP-DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCSSCC-SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCCCccccc-cccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 4566666666543 2333 789999999999997777789999999999999999998889999999999999999999
Q ss_pred ccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-C
Q 041497 118 LAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-P 196 (568)
Q Consensus 118 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~ 196 (568)
+....+..|.++++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ .
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 986555679999999999999999997777889999999999999999998888889999999999999999887665 3
Q ss_pred --CCCCCCccEEEeecccccccCCCcccCCC---------------------------CCcceEeecCCccccccCccCC
Q 041497 197 --INNISSLEYIFIHRNIYHGSLPLDIGVNL---------------------------PNLRFFIISGNNLTGSLQDSLS 247 (568)
Q Consensus 197 --l~~~~~L~~L~l~~~~~~~~~~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~~~l~ 247 (568)
...+++|+.|++++|.+.+..+..+. .+ ++|+.|++++|.+.+..+.++.
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGG-GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred hhccccccccEEECCCCcccccChhhhh-hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 34568999999999988754443322 22 5678888888988888888887
Q ss_pred CCC--CCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccC-------
Q 041497 248 NAT--NLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGA------- 318 (568)
Q Consensus 248 ~~~--~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------- 318 (568)
.++ +|+.|++++|.+.+..+..++.+++|++|++++|.+....+. .+..+++|+.++++++...+
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH------SLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT------TTTTCTTCCEEECTTCBCCC------C
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh------hhcCCCCccEEeccchhhhcccccccc
Confidence 765 499999999999988888899999999999999998876553 47789999999998875442
Q ss_pred --cCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhh----------ccCCCeeECccCccccc
Q 041497 319 --VLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI----------LKSLQMLFLHENVLQGT 386 (568)
Q Consensus 319 --~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~----------~~~L~~L~l~~~~~~~~ 386 (568)
+....+... .+++.|++++|.+.+..+..+..+++|+.+++++|.+.... .++|+.+++++|.+++.
T Consensus 318 p~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 318 PKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CEECTTTTTTC-TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred cccChhhcccC-CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 111234444 45999999999999999999999999999999887632111 23566666666666555
Q ss_pred cCccccCcccccccccccccccC-------------------------CCCCCccCCCCceEEEcccCCCC--CCCCCch
Q 041497 387 IPSFLGNLTMLTQRLLEVNDLLG-------------------------NIPPSIGNCKNLILLTTRKNKPS--GTMPRQL 439 (568)
Q Consensus 387 ~~~~~~~~~~L~~L~l~~~~~~~-------------------------~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~ 439 (568)
.+..+..+++|+.|++++|.+++ ..+..+..+++|+.|++++|.+. +..|..+
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 55555555566666665555544 33334444444455555444443 3445556
Q ss_pred hHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCC--------ccc-ccccceeecccccccccCCcc
Q 041497 440 PRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPT--------TLG-CTSLEYLCMQDNSFTGSIPST 510 (568)
Q Consensus 440 ~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~--------~~~-~~~L~~L~Ls~n~l~~~~~~~ 510 (568)
..+..+ +.|++++|.+++..+..+..+++|++|++++|++++..+. .+. +++|+.|+|++|+++.+.+..
T Consensus 477 ~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 555 (680)
T 1ziw_A 477 QPLRNL-TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555 (680)
T ss_dssp TTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCCCC-CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHH
Confidence 666666 7777777777766666677777777777777777643211 133 777888888888777555556
Q ss_pred CcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCc
Q 041497 511 LSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVW 559 (568)
Q Consensus 511 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 559 (568)
|.++++|+.|++++|.++...+..|..+++|+.|++++|+|++..|..+
T Consensus 556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred cccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 7778888888888888877666777778888888888888877766543
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-50 Score=430.89 Aligned_cols=512 Identities=17% Similarity=0.159 Sum_probs=424.8
Q ss_pred EEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCc
Q 041497 38 GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 117 (568)
Q Consensus 38 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 117 (568)
.++.++..+..++ ..+. +++++|++++|.+++..|.+|.++++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus 16 ~~~c~~~~l~~iP-~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLNEIP-GTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCSSCC-TTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcccCc-CCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 5777777776543 3333 379999999999998889999999999999999999998889999999999999999999
Q ss_pred ccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-C
Q 041497 118 LAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-P 196 (568)
Q Consensus 118 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~ 196 (568)
+.+..|..|.++++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ .
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 998889999999999999999999997667889999999999999999986443445559999999999999987766 6
Q ss_pred CCCCCCcc--EEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCC--eEecCCCc---ccccccCC
Q 041497 197 INNISSLE--YIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQ--KLDINRNL---FSGKVSIN 269 (568)
Q Consensus 197 l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~L~~n~---~~~~~~~~ 269 (568)
+..+++|+ .|++++|.+.+..+.. + ....|+.+++++|... +..+..+.++. .+.+.... .....+..
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~-~-~~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGA-F-DSAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTT-T-TTCEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred hhhhcccceeEEecCCCccCccChhH-h-hhccccccccCCchhH---HHHhhhccccchhheechhhccccccccChhH
Confidence 78888888 8899999888544443 3 4568999999988622 22233333333 33322211 11122223
Q ss_pred ccCCC--CCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCCh
Q 041497 270 FGGLQ--NLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPD 347 (568)
Q Consensus 270 ~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~ 347 (568)
+..+. +|+.|++++|.+...... .+..+++|+.|++++|.++.+ +..+...+ +++.|++++|.+.+..|.
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~-~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSN------TFHCFSGLQELDLTATHLSEL-PSGLVGLS-TLKKLVLSANKFENLCQI 319 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTT------TTTTCTTCSEEECTTSCCSCC-CSSCCSCT-TCCEEECTTCCCSBGGGG
T ss_pred hchhhcCceeEEEeecCccCccCHH------HhccccCCCEEeccCCccCCC-Chhhcccc-cCCEEECccCCcCcCchh
Confidence 33333 799999999999887664 377899999999999999854 44555554 499999999999998899
Q ss_pred hhhhhccccccCccccccc-------hhhccCCCeeECccCcccccc--CccccCcccccccccccccccCCCCCCccCC
Q 041497 348 GIANLVNLNALGVEFNQLA-------VTILKSLQMLFLHENVLQGTI--PSFLGNLTMLTQRLLEVNDLLGNIPPSIGNC 418 (568)
Q Consensus 348 ~~~~~~~L~~l~l~~~~~~-------~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 418 (568)
.+..+++|+.+++++|.+. ...+++|++|++++|.+++.. +..+..+++|+.|++++|.+++..+..+..+
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 9999999999999999775 233899999999999998765 6789999999999999999998889999999
Q ss_pred CCceEEEcccCCCCCCCCCc-hhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCccccc---CCCccc-cccc
Q 041497 419 KNLILLTTRKNKPSGTMPRQ-LPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGE---IPTTLG-CTSL 493 (568)
Q Consensus 419 ~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~---~~~~~~-~~~L 493 (568)
++|++|++++|.+.+..+.. +..+..+ +.|++++|.+++..+..+..+++|++|++++|++++. .+..+. +++|
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLL-KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTC-CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccC-CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 99999999999998776654 6666666 9999999999988888999999999999999999752 224455 9999
Q ss_pred ceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCccccccccC
Q 041497 494 EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEIKG 567 (568)
Q Consensus 494 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~~ 567 (568)
+.|++++|.+++..|..|.++++|+.|++++|.+++..|+.+.+++.| .|++++|++++..|..+.....++.
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT 551 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence 999999999998889999999999999999999999999999999999 9999999999998887766665553
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-50 Score=445.65 Aligned_cols=517 Identities=20% Similarity=0.192 Sum_probs=430.7
Q ss_pred eeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccC-CcccCCCCCCcEEeCCCCcCCCCCCccc
Q 041497 24 WTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEI-PHEVGNLFRLQNLTLTNNYFSGKIPTNL 102 (568)
Q Consensus 24 ~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 102 (568)
|..|.+ ..+++++|||++|.+.+..+..|.++++|++|++++|.....+ |.+|.++++|++|++++|.+++..|+.|
T Consensus 16 L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 16 LTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp SSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 444444 3478999999999999998999999999999999999655454 8889999999999999999998889999
Q ss_pred ccCCCCcEEeccCCcccccCchh--hcCcCcCceeecccccCCCCCC-cccCCCCCCCeEEeccCCCCCCCCcccccc--
Q 041497 103 SRCSNLVKFEASNNKLAGESPAE--IGNLLKFQLLNIAENHLRGQLP-ASIGNLSALQEINVNGNRLGGRIPSTRSHV-- 177 (568)
Q Consensus 103 ~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-- 177 (568)
.++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+..+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 99999999999999998766655 8899999999999999987654 579999999999999999998888888887
Q ss_pred ccCcEEeecccccccCCC-CCCCCCC------ccEEEeecccccccCCCcccCC--CCCcceEeecCC---------ccc
Q 041497 178 RNLISFNVGLNQFSGMFP-PINNISS------LEYIFIHRNIYHGSLPLDIGVN--LPNLRFFIISGN---------NLT 239 (568)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~-~l~~~~~------L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~---------~~~ 239 (568)
++|+.|++++|.+.+..+ .+..++. |+.|++++|.+.+..+..+... ...++.+.++.+ .+.
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 899999999999987665 5555554 9999999998877666655433 245777777633 222
Q ss_pred cccCccCCCC--CCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCccc
Q 041497 240 GSLQDSLSNA--TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFG 317 (568)
Q Consensus 240 ~~~~~~l~~~--~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 317 (568)
......+..+ ++|+.|++++|.+.+..+..++.+++|+.|++++|.+....+. .+..+++|+.|++++|.+.
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE------AFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT------TTTTCSSCCEEEEESCCCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH------HhcCCCCCCEEECCCCCCC
Confidence 2333444443 7899999999999988888899999999999999999887654 3678899999999999999
Q ss_pred CcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhh-ccCCCeeECccCccccccCccccCccc
Q 041497 318 AVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI-LKSLQMLFLHENVLQGTIPSFLGNLTM 396 (568)
Q Consensus 318 ~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~ 396 (568)
+..+..+..++. ++.|++++|.+.+..+..+..+++|+.|++++|.+.... +++|+.+++++|.++. ++.. ...
T Consensus 328 ~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~-l~~~---~~~ 402 (844)
T 3j0a_A 328 ELYSSNFYGLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT-LPKI---NLT 402 (844)
T ss_dssp CCCSCSCSSCTT-CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCC-CCCC---CTT
T ss_pred ccCHHHhcCCCC-CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccc-cccc---ccc
Confidence 888888877765 999999999999888889999999999999999986543 8899999999999883 3332 567
Q ss_pred ccccccccccccCCCCC-CccCCCCceEEEcccCCCCCCCCCc-hhHHhhhceEEEccCCcccc-----cCchhhhcCCC
Q 041497 397 LTQRLLEVNDLLGNIPP-SIGNCKNLILLTTRKNKPSGTMPRQ-LPRIITLSVLLNLSDNLLSG-----HFPAEVGKLKN 469 (568)
Q Consensus 397 L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~~l~Ls~n~l~~-----~~~~~l~~l~~ 469 (568)
++.+++++|++++.... .+.++++|+.|++++|++.+..+.. +.....+ +.|++++|.++. ..+..|..+++
T Consensus 403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL-EQLFLGENMLQLAWETELCWDVFEGLSH 481 (844)
T ss_dssp CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC-CBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc-ccccCCCCccccccccccchhhhcCccc
Confidence 89999999999764332 3457999999999999998654432 2233444 899999999873 34456889999
Q ss_pred CcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeeccc
Q 041497 470 LVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY 548 (568)
Q Consensus 470 L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 548 (568)
|++|++++|.+++..+..+. +++|+.|+|++|++++..+..+. ++|+.|++++|.+++..|+.| .+|+.+++++
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~ 556 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITH 556 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEE
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecC
Confidence 99999999999988888777 99999999999999977777665 899999999999999888766 4899999999
Q ss_pred CcccccCCCCc
Q 041497 549 NHFESKSLFVW 559 (568)
Q Consensus 549 n~i~~~~~~~~ 559 (568)
|++.|.|+..|
T Consensus 557 Np~~C~c~~~~ 567 (844)
T 3j0a_A 557 NKFICECELST 567 (844)
T ss_dssp ECCCCSSSCCS
T ss_pred CCcccccccHH
Confidence 99999999764
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.4e-49 Score=417.73 Aligned_cols=504 Identities=17% Similarity=0.162 Sum_probs=420.3
Q ss_pred EEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCC
Q 041497 37 IGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 116 (568)
Q Consensus 37 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 116 (568)
++++.+++.+..++.. +. +++++|++++|.+++..+.+|+++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~-~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDD-IP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSCCTT-SC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcccCCCC-CC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 3688888888876543 32 78999999999999888889999999999999999999888889999999999999999
Q ss_pred cccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCC-CCCccccccccCcEEeecccccccCCC
Q 041497 117 KLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGG-RIPSTRSHVRNLISFNVGLNQFSGMFP 195 (568)
Q Consensus 117 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (568)
++....|..|.++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..+
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 9998889999999999999999999997777889999999999999999986 569999999999999999999987766
Q ss_pred -CCCCCCCc----cEEEeecccccccCCCcccCCCCCcceEeecCCccc-cccCccCCCCCCCCeEecCCCccccc----
Q 041497 196 -PINNISSL----EYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT-GSLQDSLSNATNLQKLDINRNLFSGK---- 265 (568)
Q Consensus 196 -~l~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~L~~n~~~~~---- 265 (568)
.+..+++| +.+++++|.+. .++...+ ...+|+.|++++|.+. +..+..+..++.|+.+++..+.+...
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPID-FIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhhccccccceeeccCCCcc-eeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 56665555 48999999987 4555555 3348999999999876 34566778888899888865544321
Q ss_pred --ccCCccCCC--CCcEEEC-CCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCc
Q 041497 266 --VSINFGGLQ--NLSWLNL-GKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQ 340 (568)
Q Consensus 266 --~~~~~~~~~--~L~~L~l-~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 340 (568)
.+..+..+. .++.+++ ..+.+....+ .+..+++|+.++++++.+..+. .+.... +++.|++++|.
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-------~~~~l~~L~~L~l~~~~~~~l~--~l~~~~-~L~~L~l~~n~ 318 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-------KFHCLANVSAMSLAGVSIKYLE--DVPKHF-KWQSLSIIRCQ 318 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-------SCGGGTTCSEEEEESCCCCCCC--CCCTTC-CCSEEEEESCC
T ss_pred ccChHHhhhhhhccHhheecccccccccccc-------ccccCCCCCEEEecCccchhhh--hccccc-cCCEEEccccc
Confidence 111122222 3556666 4444443332 2678899999999999987754 444443 59999999999
Q ss_pred ccCCCChhhhhhccccccCccccccc----hhhccCCCeeECccCccccc--cCccccCcccccccccccccccCCCCCC
Q 041497 341 ISGFIPDGIANLVNLNALGVEFNQLA----VTILKSLQMLFLHENVLQGT--IPSFLGNLTMLTQRLLEVNDLLGNIPPS 414 (568)
Q Consensus 341 l~~~~~~~~~~~~~L~~l~l~~~~~~----~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 414 (568)
+ +.+| .+ .+++|+.++++.|... ...+++|++|++++|.+++. .+..+..+++|+.|++++|.+++ .+..
T Consensus 319 l-~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~ 394 (606)
T 3vq2_A 319 L-KQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN 394 (606)
T ss_dssp C-SSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCC
T ss_pred C-cccc-cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhh
Confidence 9 5566 44 8999999999999543 23489999999999999866 36788999999999999999875 4578
Q ss_pred ccCCCCceEEEcccCCCCCCCC-CchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccc-cCCCccc-cc
Q 041497 415 IGNCKNLILLTTRKNKPSGTMP-RQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSG-EIPTTLG-CT 491 (568)
Q Consensus 415 l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~-~~~~~~~-~~ 491 (568)
+.++++|+.|++++|.+.+..+ ..+..+..+ +.|++++|.+++..+..+..+++|++|++++|++++ ..|..++ ++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccC-CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 8999999999999999988877 567777777 999999999998889999999999999999999986 3788777 99
Q ss_pred ccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCccc
Q 041497 492 SLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPF 561 (568)
Q Consensus 492 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 561 (568)
+|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|+.|++++|+|+ .+|..+..
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~ 542 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH 542 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGG
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhh
Confidence 9999999999999888999999999999999999999999999999999999999999999 45554433
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.3e-48 Score=406.93 Aligned_cols=499 Identities=18% Similarity=0.183 Sum_probs=360.9
Q ss_pred CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497 34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 113 (568)
..++.|++++|.+.+..+..|..+++|++|++++|.+++..+.+|+++++|++|++++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 56899999999999988889999999999999999998777888999999999999999998777889999999999999
Q ss_pred cCCcccccCchhhcCcCcCceeecccccCCC-CCCcccCCCCCCCeEEeccCCCCCCCCccccccccC----cEEeeccc
Q 041497 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRG-QLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL----ISFNVGLN 188 (568)
Q Consensus 114 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~~~ 188 (568)
++|++....+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|.+....+..+..+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999986555578999999999999999886 468899999999999999999987777788888888 89999999
Q ss_pred ccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCcc------ccccCccCCCCC--CCCeEecCCC
Q 041497 189 QFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNL------TGSLQDSLSNAT--NLQKLDINRN 260 (568)
Q Consensus 189 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~l~~~~--~L~~L~L~~n 260 (568)
.+.+..+......+|+.|+++++.............++.++...+....+ .......+..++ .++.++++++
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 99877773333348999999887433211111122444444444332111 111112222222 2455666666
Q ss_pred -cccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccC
Q 041497 261 -LFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNN 339 (568)
Q Consensus 261 -~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 339 (568)
.+.+..+..+..+++|++|++++|.+...+. .+..+ +|+.|++++|.+..+... ...+++.|++++|
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-------~~~~~-~L~~L~l~~n~~~~l~~~----~l~~L~~L~l~~n 335 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-------FSYNF-GWQHLELVNCKFGQFPTL----KLKSLKRLTFTSN 335 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCB-------CCSCC-CCSEEEEESCBCSSCCBC----BCSSCCEEEEESC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhh-------hhccC-CccEEeeccCcccccCcc----cccccCEEeCcCC
Confidence 4555566667777777777777777665433 24455 777777777777644331 2234777777777
Q ss_pred cccCCCChhhhhhccccccCccccccchhhccCCCeeECccCcccccc--CccccCcccccccccccccccCCCCCCccC
Q 041497 340 QISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTI--PSFLGNLTMLTQRLLEVNDLLGNIPPSIGN 417 (568)
Q Consensus 340 ~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 417 (568)
.+.+..+. ..+ ++|++|++++|.+++.. +..+..+++|+.|++++|.+++..+. +..
T Consensus 336 ~~~~~~~~--~~~------------------~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~ 394 (570)
T 2z63_A 336 KGGNAFSE--VDL------------------PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG 394 (570)
T ss_dssp BSCCBCCC--CBC------------------TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EET
T ss_pred cccccccc--ccC------------------CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccc
Confidence 76554433 333 34444444444444322 33344455555555555555433322 455
Q ss_pred CCCceEEEcccCCCCCCCC-CchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCccc-ccCCCccc-ccccc
Q 041497 418 CKNLILLTTRKNKPSGTMP-RQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFS-GEIPTTLG-CTSLE 494 (568)
Q Consensus 418 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~-~~~~~~~~-~~~L~ 494 (568)
+++|+.|++++|.+.+..+ ..+..+..+ +.|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+. +++|+
T Consensus 395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp CTTCCEEECTTSEEESCTTSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred cCCCCEEEccCCccccccchhhhhcCCCC-CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 5555555555555544433 233334444 66677777777777788899999999999999987 46888777 99999
Q ss_pred eeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCcccccccc
Q 041497 495 YLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEIK 566 (568)
Q Consensus 495 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~ 566 (568)
.|++++|++++..|..|.++++|+.|++++|.+++..++.|.++++|+.|++++|++.|.||..|....|++
T Consensus 474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~ 545 (570)
T 2z63_A 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545 (570)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHH
Confidence 999999999988899999999999999999999998888999999999999999999999998764435554
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.9e-48 Score=404.97 Aligned_cols=489 Identities=18% Similarity=0.179 Sum_probs=334.9
Q ss_pred CceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCc
Q 041497 21 LCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPT 100 (568)
Q Consensus 21 ~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 100 (568)
.|.|.++ | |.+++.+...+. .+ .++|++|++++|.+++..|.+|.++++|++|++++|.+++..|.
T Consensus 3 ~C~~~~~-c----------~~~~~~l~~ip~-~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-C----------DGRSRSFTSIPS-GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-E----------ECTTSCCSSCCS-CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-E----------ECCCCccccccc-cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4667665 5 444555555433 22 26788888888888877778888888888888888888877777
Q ss_pred ccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCC-CCCcccCCCCCCCeEEeccCCCCCCCC-ccccccc
Q 041497 101 NLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRG-QLPASIGNLSALQEINVNGNRLGGRIP-STRSHVR 178 (568)
Q Consensus 101 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~ 178 (568)
.|.++++|++|++++|++.+..+..+.++++|++|++++|.+.+ ..+..++++++|++|++++|...+.++ ..+..++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 88888888888888888887766778888888888888888875 345678888888888888887444444 5778888
Q ss_pred cCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCcccccc---CccCCCCCCCCe
Q 041497 179 NLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSL---QDSLSNATNLQK 254 (568)
Q Consensus 179 ~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~ 254 (568)
+|++|++++|.+.+..+ .+..+++|+.|+++.+... .++..++..+++|+.|++++|.+.+.. ......+++|+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 88888888888887666 7888888888888887764 444444446788999999988877642 122345678899
Q ss_pred EecCCCcccccccC----CccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCc----hhhhc
Q 041497 255 LDINRNLFSGKVSI----NFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLP----FSLAN 326 (568)
Q Consensus 255 L~L~~n~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~ 326 (568)
|++++|.+.+..+. .+..+++|+.+++++|.+.............+..+++++.+++.++.+..... .....
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 99998887654332 24567888889888887765432111112235677888999988887654311 01112
Q ss_pred ccccceEEEcccCcccCCCChhhhhhccccccCccccccchh---------hccCCCeeECccCccccccC--ccccCcc
Q 041497 327 LSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT---------ILKSLQMLFLHENVLQGTIP--SFLGNLT 395 (568)
Q Consensus 327 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~--~~~~~~~ 395 (568)
...+++.+++++|.+.......+..+++|+.|++++|.+... .+++|++|++++|.+++... ..+..++
T Consensus 308 ~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp HSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred hcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 234588899998888743333335666666666666655431 14555566666555543321 2345555
Q ss_pred cccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEec
Q 041497 396 MLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDI 475 (568)
Q Consensus 396 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~l 475 (568)
+|+.|++++|+++ ..|..+..+++|++ |++++|++++ .+..+ .++|++|++
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~-------------------------L~Ls~N~l~~-l~~~~--~~~L~~L~L 438 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQWPEKMRF-------------------------LNLSSTGIRV-VKTCI--PQTLEVLDV 438 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCCCTTCCE-------------------------EECTTSCCSC-CCTTS--CTTCSEEEC
T ss_pred CCCEEECCCCCCc-cCChhhcccccccE-------------------------EECCCCCccc-ccchh--cCCceEEEC
Confidence 5555555555554 33444444555544 4555555442 22222 257888888
Q ss_pred CCCcccccCCCcccccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccC
Q 041497 476 SSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKS 555 (568)
Q Consensus 476 s~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 555 (568)
++|++++.. ..+++|++|+|++|+++ .+|. ...+++|+.|++++|.+++..|+.|..+++|+.|++++|++.|.|
T Consensus 439 s~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 439 SNNNLDSFS---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CSSCCSCCC---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred CCCChhhhc---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 888877432 23788888888888887 4554 456788888888888888888888888888888888888888888
Q ss_pred CCC
Q 041497 556 LFV 558 (568)
Q Consensus 556 ~~~ 558 (568)
|..
T Consensus 514 ~~~ 516 (549)
T 2z81_A 514 PRI 516 (549)
T ss_dssp HHH
T ss_pred ccH
Confidence 854
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.1e-48 Score=414.11 Aligned_cols=462 Identities=18% Similarity=0.256 Sum_probs=242.3
Q ss_pred CCCCCCCCCCCCcee---eeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCccc------c------cC
Q 041497 10 GVTSSWNNSINLCQW---TGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFR------A------EI 74 (568)
Q Consensus 10 ~~~~~~~~~~~~c~~---~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~------~------~~ 74 (568)
+..++|+.+.++|.| .||.|... .+|+.|+|+++.+.|.+++.++++++|++|++++|.+. + .+
T Consensus 55 ~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~ 133 (636)
T 4eco_A 55 QPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM 133 (636)
T ss_dssp ---CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTC
T ss_pred ccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCc
Confidence 455689998999999 99999754 79999999999999999999999999999999999762 1 12
Q ss_pred CcccCCCCCCcEEeCCCCcCCCCCCccccc-C------------------CCCcEEecc--CCcccccCchhhcCcCcCc
Q 041497 75 PHEVGNLFRLQNLTLTNNYFSGKIPTNLSR-C------------------SNLVKFEAS--NNKLAGESPAEIGNLLKFQ 133 (568)
Q Consensus 75 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l------------------~~L~~L~l~--~n~~~~~~~~~~~~l~~L~ 133 (568)
|... +..|+ ++++++.+.+..|..+.. + ..++.+.+. .|++++ +|..++++++|+
T Consensus 134 ~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~ 209 (636)
T 4eco_A 134 SDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLR 209 (636)
T ss_dssp CHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCC
T ss_pred hHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCC
Confidence 2222 23444 555555544444433321 1 111112221 345554 555666666666
Q ss_pred eeecccccCCCC-----------------CCcccC--CCCCCCeEEeccCCCCCCCCccccccccCcEEeecccc-ccc-
Q 041497 134 LLNIAENHLRGQ-----------------LPASIG--NLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQ-FSG- 192 (568)
Q Consensus 134 ~L~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~- 192 (568)
+|++++|.+.+. +|..++ ++++|++|++++|.+.+.+|..+..+++|+.|++++|. +.+
T Consensus 210 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~ 289 (636)
T 4eco_A 210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289 (636)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH
T ss_pred EEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc
Confidence 666666665543 555555 66666666666666555556556666666666666555 443
Q ss_pred CCC-CCCCC------CCccEEEeecccccccCCC--cccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCccc
Q 041497 193 MFP-PINNI------SSLEYIFIHRNIYHGSLPL--DIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFS 263 (568)
Q Consensus 193 ~~~-~l~~~------~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~ 263 (568)
..| .+..+ ++|+.|++++|.+. .+|. .+. .+++|++|++++|.+.+.+| .+..+++|+.|++++|.+.
T Consensus 290 ~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 290 QLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp HHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE
T ss_pred cchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc
Confidence 222 22222 44444444444444 3443 222 44445555555554444344 4444444555555555444
Q ss_pred ccccCCccCCCC-CcEEECCCCCCCCcCCCCchhhhcccC--CCcccEEEeccCcccCcCchhhhcccccceEEEcccCc
Q 041497 264 GKVSINFGGLQN-LSWLNLGKNNLGTRTANDLDFITLLTN--CTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQ 340 (568)
Q Consensus 264 ~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 340 (568)
..|..+..+++ |++|++++|.+..++.. +.. +++|+.|++++|.+
T Consensus 367 -~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~-------~~~~~l~~L~~L~Ls~N~l------------------------ 414 (636)
T 4eco_A 367 -EIPANFCGFTEQVENLSFAHNKLKYIPNI-------FDAKSVSVMSAIDFSYNEI------------------------ 414 (636)
T ss_dssp -ECCTTSEEECTTCCEEECCSSCCSSCCSC-------CCTTCSSCEEEEECCSSCT------------------------
T ss_pred -cccHhhhhhcccCcEEEccCCcCcccchh-------hhhcccCccCEEECcCCcC------------------------
Confidence 33333444444 44444444444422211 111 12444444444444
Q ss_pred ccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccC---
Q 041497 341 ISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGN--- 417 (568)
Q Consensus 341 l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--- 417 (568)
.+..|..+..+. .....+++|++|++++|.++......+..+++|+.|++++|+++......+..
T Consensus 415 -~~~~p~~l~~~~-----------~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 415 -GSVDGKNFDPLD-----------PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp -TTTTTCSSCTTC-----------SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred -CCcchhhhcccc-----------cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 443333333100 00000223444444444444222222333455555555555544222222221
Q ss_pred ----CCCceEEEcccCCCCCCCCCchh--HHhhhceEEEccCCcccccCchhhhcCCCCcEEec------CCCcccccCC
Q 041497 418 ----CKNLILLTTRKNKPSGTMPRQLP--RIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDI------SSNMFSGEIP 485 (568)
Q Consensus 418 ----~~~L~~L~l~~~~~~~~~~~~~~--~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~l------s~n~l~~~~~ 485 (568)
+++|+.|++++|.+. .+|..+. .+..+ +.|++++|.+++ +|..+..+++|++|++ ++|++.+.+|
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L-~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL-VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC-CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred cccccCCccEEECcCCcCC-ccChhhhhccCCCc-CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 225555555555544 3333333 33333 555555555554 5556666677777776 4455556666
Q ss_pred Cccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCcccc
Q 041497 486 TTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 529 (568)
Q Consensus 486 ~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 529 (568)
..+. +++|+.|+|++|+++ .+|..+. ++|+.|++++|++..
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp TTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred HHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 6665 677777777777774 5555444 567777777776654
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-46 Score=412.97 Aligned_cols=501 Identities=19% Similarity=0.198 Sum_probs=410.3
Q ss_pred EEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCC-CCcccccCCCCcEEeccCC
Q 041497 38 GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGK-IPTNLSRCSNLVKFEASNN 116 (568)
Q Consensus 38 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n 116 (568)
..|.+++.+..++. -.+++++|++++|.++...+.+|.++++|++|++++|..... .|+.|.++++|++|++++|
T Consensus 8 ~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 34455666666543 457899999999999988899999999999999999955434 4888999999999999999
Q ss_pred cccccCchhhcCcCcCceeecccccCCCCCCcc--cCCCCCCCeEEeccCCCCCCCC-ccccccccCcEEeecccccccC
Q 041497 117 KLAGESPAEIGNLLKFQLLNIAENHLRGQLPAS--IGNLSALQEINVNGNRLGGRIP-STRSHVRNLISFNVGLNQFSGM 193 (568)
Q Consensus 117 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~ 193 (568)
.+....|..|.++++|++|++++|.+.+..+.. ++++++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 999888999999999999999999998766655 8999999999999999986544 5789999999999999999877
Q ss_pred CC-CCCCC--CCccEEEeecccccccCCCcccCCCC------CcceEeecCCccccccCccCCC---CCCCCeEecCCC-
Q 041497 194 FP-PINNI--SSLEYIFIHRNIYHGSLPLDIGVNLP------NLRFFIISGNNLTGSLQDSLSN---ATNLQKLDINRN- 260 (568)
Q Consensus 194 ~~-~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~L~~n- 260 (568)
.+ .+..+ ++|+.|+++.|.+.+..+..+. .++ .|+.|++++|.+.+..+..+.. ...++.+.+..+
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred CHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 66 66666 8999999999998876666544 333 3999999999887766655543 356888887743
Q ss_pred --------cccccccCCccCC--CCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhccccc
Q 041497 261 --------LFSGKVSINFGGL--QNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTT 330 (568)
Q Consensus 261 --------~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 330 (568)
.+.+.....|..+ ++|+.|++++|.+....+. .+..+++|+.|++++|.+.+..+..+.....
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~- 315 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR------VFETLKDLKVLNLAYNKINKIADEAFYGLDN- 315 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC------CSSSCCCCCEEEEESCCCCEECTTTTTTCSS-
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChh------hhhcCCCCCEEECCCCcCCCCChHHhcCCCC-
Confidence 2333333444443 7899999999999876554 4778999999999999999988888877755
Q ss_pred ceEEEcccCcccCCCChhhhhhccccccCccccccchhh------ccCCCeeECccCccccccCccccCccccccccccc
Q 041497 331 MTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI------LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEV 404 (568)
Q Consensus 331 l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 404 (568)
++.|++++|.+.+..+..+..+++|+.|+++.|.+.... +++|++|++++|.+++. ..+++|+.+++++
T Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSG 390 (844)
T ss_dssp CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEES
T ss_pred CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCC
Confidence 999999999999998999999999999999999885332 88999999999998742 3378999999999
Q ss_pred ccccCCCCCCccCCCCceEEEcccCCCCCCCCCc-hhHHhhhceEEEccCCcccccCch-hhhcCCCCcEEecCCCccc-
Q 041497 405 NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQ-LPRIITLSVLLNLSDNLLSGHFPA-EVGKLKNLVSLDISSNMFS- 481 (568)
Q Consensus 405 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~~l~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~- 481 (568)
|+++.. +.. ...++.+++++|++.+..... +..+..+ +.|++++|.+++..+. .+..+++|+.|++++|.++
T Consensus 391 N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 465 (844)
T 3j0a_A 391 NKLVTL-PKI---NLTANLIHLSENRLENLDILYFLLRVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465 (844)
T ss_dssp CCCCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSS
T ss_pred CCcccc-ccc---ccccceeecccCccccCchhhhhhcCCcc-ceeeCCCCcccccccccccccCCccccccCCCCcccc
Confidence 999743 322 567999999999988653222 2244555 9999999999865433 4566899999999999986
Q ss_pred ----ccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCC
Q 041497 482 ----GEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSL 556 (568)
Q Consensus 482 ----~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 556 (568)
+..+..+. +++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+..+. ++|+.|++++|++++..|
T Consensus 466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred ccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh
Confidence 33345565 89999999999999988899999999999999999999988777776 899999999999999999
Q ss_pred CCcccc
Q 041497 557 FVWPFV 562 (568)
Q Consensus 557 ~~~~~~ 562 (568)
..+..+
T Consensus 544 ~~~~~L 549 (844)
T 3j0a_A 544 DVFVSL 549 (844)
T ss_dssp CCCSSC
T ss_pred hHhCCc
Confidence 876543
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.7e-47 Score=405.46 Aligned_cols=544 Identities=21% Similarity=0.210 Sum_probs=404.6
Q ss_pred CCCCCCCCCCCCC----CCCceee----eceeCCCC---------CeEEEEeccCCccccccCCcccCCCCCceeeccCC
Q 041497 6 QDPLGVTSSWNNS----INLCQWT----GVTCGHRH---------QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANN 68 (568)
Q Consensus 6 ~~~~~~~~~~~~~----~~~c~~~----~~~c~~~~---------~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~ 68 (568)
.|+..+++.|..+ .+.|.+. .|.|.++. ..+++|||++|.|.+..+.+|.++++|++|++++|
T Consensus 7 ~~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N 86 (635)
T 4g8a_A 7 KDDDDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 86 (635)
T ss_dssp ------------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCCcchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC
Confidence 3667777777554 3456653 47897532 46899999999999988889999999999999999
Q ss_pred cccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCC-CCC
Q 041497 69 SFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRG-QLP 147 (568)
Q Consensus 69 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~ 147 (568)
.++...+.+|.++++|++|++++|++++..++.|.++++|++|++++|++++..+..|+++++|++|++++|.+.+ ..|
T Consensus 87 ~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~ 166 (635)
T 4g8a_A 87 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 166 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCc
Confidence 9987777889999999999999999986666788999999999999999987666778999999999999999875 356
Q ss_pred cccCCCCCCCeEEeccCCCCCCCCccccccccCc----EEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccC
Q 041497 148 ASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLI----SFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGV 223 (568)
Q Consensus 148 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 223 (568)
..++.+++|++|++++|.+.+..+..+..+.+++ .++++.+.+....+.......++.+.+..+.....+....+.
T Consensus 167 ~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~ 246 (635)
T 4g8a_A 167 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 246 (635)
T ss_dssp GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHH
T ss_pred hhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhc
Confidence 7788899999999999999877777776665543 677888877766554455556777777776544333333334
Q ss_pred CCCCcceEeecCCcc------ccccCccCCCCCCCCeEecCCCccc---ccccCCccCCCCCcEEECCCCCCCCcCCCCc
Q 041497 224 NLPNLRFFIISGNNL------TGSLQDSLSNATNLQKLDINRNLFS---GKVSINFGGLQNLSWLNLGKNNLGTRTANDL 294 (568)
Q Consensus 224 ~~~~L~~L~l~~~~~------~~~~~~~l~~~~~L~~L~L~~n~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 294 (568)
.+..++...+..+.. .......+.....+....+..+... ......+....+++.+.+.++.+.....
T Consensus 247 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--- 323 (635)
T 4g8a_A 247 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--- 323 (635)
T ss_dssp TTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---
T ss_pred CCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc---
Confidence 556666555433221 1112223333344444444433221 1222335566777888877776654432
Q ss_pred hhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhh-----
Q 041497 295 DFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI----- 369 (568)
Q Consensus 295 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~----- 369 (568)
+.....++.+++.+|.+.......+ ..++.+++..+..... .....+++|+.++++.|.+....
T Consensus 324 -----~~~~~~L~~L~l~~~~~~~~~~~~l----~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 392 (635)
T 4g8a_A 324 -----FSYNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQS 392 (635)
T ss_dssp -----GGSCCCCSEEEEESCEESSCCCCBC----TTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred -----cccchhhhhhhcccccccCcCcccc----hhhhhcccccccCCCC--cccccccccccchhhccccccccccccc
Confidence 4456778888888887766543322 2377778877766543 23345778888888888764322
Q ss_pred ---ccCCCeeECccCccccccCccccCcccccccccccccccCCC-CCCccCCCCceEEEcccCCCCCCCCCchhHHhhh
Q 041497 370 ---LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNI-PPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITL 445 (568)
Q Consensus 370 ---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 445 (568)
..+|+.+++..+.... .+..+..++.|+.+++..+...... ...+..+++++.++++.|.+.+..+..+.....+
T Consensus 393 ~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 393 DFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp HHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence 6789999999988774 4567888999999999988765543 3567889999999999999988888887777777
Q ss_pred ceEEEccCCcc-cccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCC
Q 041497 446 SVLLNLSDNLL-SGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLS 523 (568)
Q Consensus 446 ~~~l~Ls~n~l-~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 523 (568)
+.+++++|.+ .+..|..|..+++|++|++++|++++..|..+. +++|++|+|++|++++..+..|..+++|++||++
T Consensus 472 -~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 550 (635)
T 4g8a_A 472 -EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 550 (635)
T ss_dssp -CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred -hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence 9999999974 445678899999999999999999988888887 9999999999999998889999999999999999
Q ss_pred CCccccCcCcccccc-ccCCeeecccCcccccCCCCcccccccc
Q 041497 524 RNNLSGHIPQYLENL-SFLSFLNLSYNHFESKSLFVWPFVDEIK 566 (568)
Q Consensus 524 ~n~l~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~~~~~~ 566 (568)
+|.+++..|+.|..+ ++|+.|++++||+.|.|...| +..|++
T Consensus 551 ~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~-~~~wl~ 593 (635)
T 4g8a_A 551 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS-FLQWIK 593 (635)
T ss_dssp TSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHH-HHHHHH
T ss_pred CCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHH-HHHHHH
Confidence 999999999999988 689999999999999999664 566654
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-46 Score=406.92 Aligned_cols=488 Identities=17% Similarity=0.242 Sum_probs=293.0
Q ss_pred CcccCCCCCCCCCCCCCCC-----CC--cee------------eeceeCCCCCeEEEEeccCCccccccCCcccCCCCCc
Q 041497 1 MKSQLQDPLGVTSSWNNSI-----NL--CQW------------TGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLR 61 (568)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-----~~--c~~------------~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~ 61 (568)
||.++.|| .|+.+. ++ |.| .||.|.. ..+|+.|+|+++.+.|.+++.++++++|+
T Consensus 277 ~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~ 350 (876)
T 4ecn_A 277 IWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELK 350 (876)
T ss_dssp HHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGGGGGCTTCC
T ss_pred HHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchHHhccccce
Confidence 46777777 787654 55 999 9999975 57899999999999999999999999999
Q ss_pred eeec-cCCcccccCCcccCCC----CCC--cEE---------eC-CCCcCCC-----------CCCcccccCCCCcEEec
Q 041497 62 SINL-ANNSFRAEIPHEVGNL----FRL--QNL---------TL-TNNYFSG-----------KIPTNLSRCSNLVKFEA 113 (568)
Q Consensus 62 ~L~l-s~~~~~~~~~~~~~~l----~~L--~~L---------~l-~~n~~~~-----------~~~~~~~~l~~L~~L~l 113 (568)
+|++ ++|.+.+..|...... ... +.+ .. ....+.+ ..+........++.+.+
T Consensus 351 ~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l 430 (876)
T 4ecn_A 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI 430 (876)
T ss_dssp EEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTT
T ss_pred EeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhcee
Confidence 9999 8888766533221111 000 000 00 0000000 00000011122333333
Q ss_pred cC--CcccccCchhhcCcCcCceeecccccCCC-----------------CCCcccC--CCCCCCeEEeccCCCCCCCCc
Q 041497 114 SN--NKLAGESPAEIGNLLKFQLLNIAENHLRG-----------------QLPASIG--NLSALQEINVNGNRLGGRIPS 172 (568)
Q Consensus 114 ~~--n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~ 172 (568)
.. |.+++ +|..+.++++|++|++++|.+.+ .+|..++ ++++|++|++++|.+.+.+|.
T Consensus 431 ~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~ 509 (876)
T 4ecn_A 431 GNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509 (876)
T ss_dssp TCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG
T ss_pred ccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH
Confidence 32 45554 55556666666666666666554 2555555 666666666666666666666
Q ss_pred cccccccCcEEeecccc-ccc-CCC--------CCCCCCCccEEEeecccccccCCC--cccCCCCCcceEeecCCcccc
Q 041497 173 TRSHVRNLISFNVGLNQ-FSG-MFP--------PINNISSLEYIFIHRNIYHGSLPL--DIGVNLPNLRFFIISGNNLTG 240 (568)
Q Consensus 173 ~l~~l~~L~~L~l~~~~-~~~-~~~--------~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~ 240 (568)
.+..+++|+.|++++|. +.+ ..| .+..+++|+.|++++|.+. .+|. .+. .+++|+.|++++|.+.
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-
Confidence 66666666666666665 443 222 2233457777777777766 5665 333 6777777777777776
Q ss_pred ccCccCCCCCCCCeEecCCCcccccccCCccCCCC-CcEEECCCCCCCCcCCCCchhhhcccCC--CcccEEEeccCccc
Q 041497 241 SLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN-LSWLNLGKNNLGTRTANDLDFITLLTNC--TKLEVLVLDSNRFG 317 (568)
Q Consensus 241 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~ 317 (568)
.+| .+..+++|+.|++++|.+. ..|..+..+++ |+.|++++|.+..++. .+... ++|+.|++++|++.
T Consensus 587 ~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~-------~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 587 HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN-------IFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS-------CCCTTCSSCEEEEECCSSCTT
T ss_pred cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCch-------hhhccccCCCCEEECcCCcCC
Confidence 445 6777777777777777776 45555667777 7777777777764432 13333 34788888888776
Q ss_pred CcCchhh---hcc-cccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCcc-c-
Q 041497 318 AVLPFSL---ANL-STTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSF-L- 391 (568)
Q Consensus 318 ~~~~~~~---~~~-~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~- 391 (568)
+..+... ... ..+++.|++++|.+....+..+..+ ++|+.|++++|.++ .++.. +
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l------------------~~L~~L~Ls~N~L~-~ip~~~~~ 718 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG------------------SPISTIILSNNLMT-SIPENSLK 718 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTT------------------CCCSEEECCSCCCS-CCCTTSSS
T ss_pred CccccchhhhccccCCCcCEEEccCCcCCccCHHHHccC------------------CCCCEEECCCCcCC-ccChHHhc
Confidence 6433211 110 1236666666666663322223333 33445555555444 22221 1
Q ss_pred ------cCcccccccccccccccCCCCCCcc--CCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchh
Q 041497 392 ------GNLTMLTQRLLEVNDLLGNIPPSIG--NCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAE 463 (568)
Q Consensus 392 ------~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~ 463 (568)
.++++|+.|++++|+++ .+|..+. .+++| +.|+|++|.+++ +|..
T Consensus 719 ~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-------------------------~~L~Ls~N~L~~-lp~~ 771 (876)
T 4ecn_A 719 PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-------------------------SNMDVSYNCFSS-FPTQ 771 (876)
T ss_dssp CTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-------------------------CEEECCSSCCSS-CCCG
T ss_pred cccccccccCCccEEECCCCCCc-cchHHhhhccCCCc-------------------------CEEEeCCCCCCc-cchh
Confidence 12224444444444444 2333332 34444 444555555553 4555
Q ss_pred hhcCCCCcEEecCC------CcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCcccc
Q 041497 464 VGKLKNLVSLDISS------NMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLE 536 (568)
Q Consensus 464 l~~l~~L~~L~ls~------n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 536 (568)
+..+++|+.|++++ |++.+.+|..+. +++|+.|+|++|++. .+|..+. ++|+.||+++|++....+..+.
T Consensus 772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~ 848 (876)
T 4ecn_A 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVC 848 (876)
T ss_dssp GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence 66667777777755 677777787776 888888888888884 6666654 5888999999988877777777
Q ss_pred ccccCCeeecccCcccc--cCC
Q 041497 537 NLSFLSFLNLSYNHFES--KSL 556 (568)
Q Consensus 537 ~l~~L~~L~l~~n~i~~--~~~ 556 (568)
....+..+.+.+|++.+ .||
T Consensus 849 ~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 849 PYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp HHHHTTCCEEECCTTSEEESCG
T ss_pred ccccchheeecCCCccccCCCC
Confidence 77777788888887766 555
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-45 Score=385.13 Aligned_cols=469 Identities=16% Similarity=0.146 Sum_probs=312.8
Q ss_pred EEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCC
Q 041497 37 IGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 116 (568)
Q Consensus 37 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 116 (568)
+++|++++.+...+ ..+. ++|++|++++|.+.+..|.+|.++++|++|++++|.+++..|+.|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVP-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCC-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccc-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46888888888644 3343 78899999999888767778888899999999999888777888888899999999998
Q ss_pred cccccCchhhcCcCcCceeecccccCCC-CCCcccCCCCCCCeEEeccCCCCCCCCccccccccC--cEEeeccccc--c
Q 041497 117 KLAGESPAEIGNLLKFQLLNIAENHLRG-QLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL--ISFNVGLNQF--S 191 (568)
Q Consensus 117 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~ 191 (568)
+++ .+|.. .+++|++|++++|.+.+ ..|..++++++|++|++++|.+.+ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 887 45555 78889999999888876 467788888888888888888764 456677777 8888888877 4
Q ss_pred cCCC-CCCCCC-CccEEEeecccccccCCCcccCCCCCcceEeecCCc-------cccccCccCCCCCCCCeEecCCCcc
Q 041497 192 GMFP-PINNIS-SLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNN-------LTGSLQDSLSNATNLQKLDINRNLF 262 (568)
Q Consensus 192 ~~~~-~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~L~~n~~ 262 (568)
+..+ .+..+. ....++++++.+.+.++...+..+++|+.+++++|. +.+..+ .+..+++|+.|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 4333 444433 233445556666555555555567777777777765 333333 455666667776666665
Q ss_pred cccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhh-----hcccccceEEEcc
Q 041497 263 SGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSL-----ANLSTTMTGIAFG 337 (568)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~~l~~L~l~ 337 (568)
.+.....+. .. ...++|+.|++++|++.+..+..+ ..+ ..++.++++
T Consensus 233 ~~~~~~~~~--------------------------~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l-~~L~~l~l~ 284 (520)
T 2z7x_B 233 TWNSFIRIL--------------------------QL-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL-KALSIHQVV 284 (520)
T ss_dssp EHHHHHHHH--------------------------HH-HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCC-CEEEEEEEE
T ss_pred CHHHHHHHH--------------------------HH-hhhCcccEEEeecccccCccccchhhcccccC-ceeEecccc
Confidence 432211110 00 012344444444444443333332 222 124445555
Q ss_pred cCcccCCCC-hhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCcc
Q 041497 338 NNQISGFIP-DGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIG 416 (568)
Q Consensus 338 ~~~l~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 416 (568)
.|.+ ..| ..+..+-. ..+|+.|++++|.+.... ....+++|++|++++|.+++..+..+.
T Consensus 285 ~n~~--~~p~~~~~~~~~---------------~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 345 (520)
T 2z7x_B 285 SDVF--GFPQSYIYEIFS---------------NMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG 345 (520)
T ss_dssp ECCC--CSCTHHHHHHHH---------------TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred ccce--ecchhhhhcccc---------------cCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc
Confidence 5444 122 23332200 123555555555543221 124556666666666666665566666
Q ss_pred CCCCceEEEcccCCCCC--CCCCchhHHhhhceEEEccCCcccccCch-hhhcCCCCcEEecCCCcccccCCCccccccc
Q 041497 417 NCKNLILLTTRKNKPSG--TMPRQLPRIITLSVLLNLSDNLLSGHFPA-EVGKLKNLVSLDISSNMFSGEIPTTLGCTSL 493 (568)
Q Consensus 417 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L 493 (568)
.+++|++|++++|.+.+ .++..+..+..+ +.|++++|.+++..|. .+..+++|++|++++|++++..|..+. ++|
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~L 423 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-PRI 423 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-TTC
T ss_pred cCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-ccC
Confidence 66666666666666654 223334444445 7777777777763444 477889999999999999877766554 899
Q ss_pred ceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCccccccc
Q 041497 494 EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEI 565 (568)
Q Consensus 494 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~ 565 (568)
+.|++++|+++ .+|..+..+++|+.|++++|.++...+..|..+++|+.|++++|++.|.|+..|-...|+
T Consensus 424 ~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~ 494 (520)
T 2z7x_B 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 494 (520)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred CEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHH
Confidence 99999999999 777777799999999999999996555558999999999999999999999765434444
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.4e-44 Score=377.68 Aligned_cols=464 Identities=16% Similarity=0.146 Sum_probs=374.9
Q ss_pred CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEe
Q 041497 33 HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFE 112 (568)
Q Consensus 33 ~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 112 (568)
.+.+++|++++|.+.+..+..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+++..+..|+++++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 47899999999999998888999999999999999999988889999999999999999999977777799999999999
Q ss_pred ccCCcccc-cCchhhcCcCcCceeecccccCCCCCC-cccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccc
Q 041497 113 ASNNKLAG-ESPAEIGNLLKFQLLNIAENHLRGQLP-ASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF 190 (568)
Q Consensus 113 l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (568)
+++|++.. ..|..+.++++|++|++++|...+.++ ..+..+++|++|++++|.+.+..|..+..+++|+.|+++++..
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999985 356789999999999999998544444 6799999999999999999988899999999999999999987
Q ss_pred ccCCC-CCCCCCCccEEEeecccccccC--CCcccCCCCCcceEeecCCcccccc----CccCCCCCCCCeEecCCCccc
Q 041497 191 SGMFP-PINNISSLEYIFIHRNIYHGSL--PLDIGVNLPNLRFFIISGNNLTGSL----QDSLSNATNLQKLDINRNLFS 263 (568)
Q Consensus 191 ~~~~~-~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~L~~n~~~ 263 (568)
..... .+..+++|+.|++++|.+.+.. +..+...+++|+.|++++|.+.+.. +..+..+++|+.+++++|.+.
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 54433 3456899999999999987532 3334446789999999999887643 234466789999999999887
Q ss_pred cccc------CCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcc
Q 041497 264 GKVS------INFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFG 337 (568)
Q Consensus 264 ~~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 337 (568)
+... ..+..+++++.+++.++.+...... ..+.......++|+.+++++|.+..+....+... ++++.|+++
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l-~~L~~L~Ls 342 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL-KSLEFLDLS 342 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGS-CCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC-TTCCEEECC
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhc-ccchhhhhhcccceEEEeccCccccCCHHHHhcC-ccccEEEcc
Confidence 6432 2346788999999998876553210 0111123345789999999999876544433444 459999999
Q ss_pred cCcccCCCCh---hhhhhccccccCccccccch--------hhccCCCeeECccCccccccCccccCccccccccccccc
Q 041497 338 NNQISGFIPD---GIANLVNLNALGVEFNQLAV--------TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVND 406 (568)
Q Consensus 338 ~~~l~~~~~~---~~~~~~~L~~l~l~~~~~~~--------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 406 (568)
+|.+.+..|. .+..+++|+.|++++|.+.. ..+++|++|++++|.++ .++..+..+++|+.|++++|+
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence 9999876643 37788999999999999853 23899999999999998 577788899999999999999
Q ss_pred ccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCC
Q 041497 407 LLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPT 486 (568)
Q Consensus 407 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~ 486 (568)
++.. +..+ .++| +.|++++|++++. ...+++|++|++++|+++ .+|.
T Consensus 422 l~~l-~~~~--~~~L-------------------------~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 422 IRVV-KTCI--PQTL-------------------------EVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp CSCC-CTTS--CTTC-------------------------SEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC
T ss_pred cccc-cchh--cCCc-------------------------eEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC
Confidence 8642 2221 1344 5555666666532 246789999999999998 7777
Q ss_pred cccccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcC
Q 041497 487 TLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 532 (568)
Q Consensus 487 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 532 (568)
...+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 469 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 5459999999999999998888889999999999999999987555
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-44 Score=379.76 Aligned_cols=473 Identities=20% Similarity=0.165 Sum_probs=355.8
Q ss_pred CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeec
Q 041497 58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI 137 (568)
Q Consensus 58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 137 (568)
+++++|++++|.++...+.+|.++++|++|++++|.+++..+..|.++++|++|++++|++....+..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57999999999999878889999999999999999999777888999999999999999998887889999999999999
Q ss_pred ccccCCCCCCcccCCCCCCCeEEeccCCCCC-CCCccccccccCcEEeecccccccCCC-CCCCCCCc----cEEEeecc
Q 041497 138 AENHLRGQLPASIGNLSALQEINVNGNRLGG-RIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSL----EYIFIHRN 211 (568)
Q Consensus 138 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L----~~L~l~~~ 211 (568)
++|.+.+..+..++++++|++|++++|.+.. .+|..+..+++|++|++++|.+.+..+ .+..+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999986665679999999999999999886 468999999999999999998877655 55566666 67777777
Q ss_pred cccccCCCcccCCCCCcceEeecCCcccc-ccCccCCCCCCCCeEecCCCccc------ccccCCccCCCCCcEEECCCC
Q 041497 212 IYHGSLPLDIGVNLPNLRFFIISGNNLTG-SLQDSLSNATNLQKLDINRNLFS------GKVSINFGGLQNLSWLNLGKN 284 (568)
Q Consensus 212 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~L~~n~~~------~~~~~~~~~~~~L~~L~l~~~ 284 (568)
.+.+..+ ..+ ...+|+.+++++|.... ..+..+..++.++...+....+. ......+..++++
T Consensus 188 ~l~~~~~-~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l-------- 257 (570)
T 2z63_A 188 PMNFIQP-GAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL-------- 257 (570)
T ss_dssp CCCEECT-TTT-TTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS--------
T ss_pred CceecCH-HHh-ccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc--------
Confidence 7664333 333 22367777777663221 12233444555554444322211 1111112211111
Q ss_pred CCCCcCCCCchhhhcccCCCcccEEEeccC-cccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCcccc
Q 041497 285 NLGTRTANDLDFITLLTNCTKLEVLVLDSN-RFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFN 363 (568)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~ 363 (568)
.++.+++..+ .+.+..+..+..... ++.+++++|.+.+ +|..+..+ +|+.+++++|
T Consensus 258 --------------------~l~~l~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n 314 (570)
T 2z63_A 258 --------------------TIEEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTIER-VKDFSYNF-GWQHLELVNC 314 (570)
T ss_dssp --------------------EEEEEEEEETTEEESCSTTTTGGGTT-CSEEEEESCEECS-CCBCCSCC-CCSEEEEESC
T ss_pred --------------------chhhhhhhcchhhhhhchhhhcCcCc-ccEEEecCccchh-hhhhhccC-CccEEeeccC
Confidence 1334444443 333333333333322 5555555554442 34444444 5555555555
Q ss_pred ccch---hhccCCCeeECccCccccccCccccCcccccccccccccccCCC--CCCccCCCCceEEEcccCCCCCCCCCc
Q 041497 364 QLAV---TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNI--PPSIGNCKNLILLTTRKNKPSGTMPRQ 438 (568)
Q Consensus 364 ~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~ 438 (568)
.+.. ..+++|+.+++++|.+.+..+. ..+++|+.|++++|.+++.. +..+.++++|++|++++|.+.+..+.
T Consensus 315 ~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~- 391 (570)
T 2z63_A 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN- 391 (570)
T ss_dssp BCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-
T ss_pred cccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-
Confidence 4431 1267899999999988765543 77999999999999987654 56788899999999999998765443
Q ss_pred hhHHhhhceEEEccCCcccccCc-hhhhcCCCCcEEecCCCcccccCCCccc-ccccceeeccccccc-ccCCccCcCCC
Q 041497 439 LPRIITLSVLLNLSDNLLSGHFP-AEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFT-GSIPSTLSSLK 515 (568)
Q Consensus 439 ~~~~~~l~~~l~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~-~~~~~~~~~l~ 515 (568)
+..+..+ +.|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+. +++|+.|++++|.++ +.+|..+..++
T Consensus 392 ~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 392 FLGLEQL-EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp EETCTTC-CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccCCC-CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 6667777 999999999987655 5788999999999999999988888887 999999999999997 46888999999
Q ss_pred CCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCccccccccC
Q 041497 516 SITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEIKG 567 (568)
Q Consensus 516 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~~ 567 (568)
+|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..+..++.
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 9999999999999988999999999999999999999998887777766654
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-42 Score=362.80 Aligned_cols=466 Identities=15% Similarity=0.156 Sum_probs=299.3
Q ss_pred EEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccC
Q 041497 36 VIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 115 (568)
Q Consensus 36 i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 115 (568)
.+++|++++.+..++. .+. +++++|++++|.+.+..+.+|.++++|++|++++|.+++..|+.|.++++|++|++++
T Consensus 33 ~~~l~ls~~~L~~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCSCCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCccCCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3789999998887543 332 7899999999998877777889999999999999998877788888999999999999
Q ss_pred CcccccCchhhcCcCcCceeecccccCCCC-CCcccCCCCCCCeEEeccCCCCCCCCccccccccC--cEEeeccccc--
Q 041497 116 NKLAGESPAEIGNLLKFQLLNIAENHLRGQ-LPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNL--ISFNVGLNQF-- 190 (568)
Q Consensus 116 n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~-- 190 (568)
|+++ .+|.. .+++|++|++++|.+.+. .|..++++++|++|++++|.+... .+..+++| +.|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 9887 45544 788999999999888753 357788888899999888887642 34455555 8888888877
Q ss_pred ccCCC-CCCCCC-CccEEEeecccccccCCCcccCCCCCcceEeecCCccc----cccCccCCCCCCCCeEecCCCcccc
Q 041497 191 SGMFP-PINNIS-SLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT----GSLQDSLSNATNLQKLDINRNLFSG 264 (568)
Q Consensus 191 ~~~~~-~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~L~~n~~~~ 264 (568)
.+..+ .+..++ ..-.++++.|.+.+.++...+..+++|+.+++++|... ......+...++|+.+++.++.+.+
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 44433 333322 11133444444444444444444555555555554210 0011123334444444444443322
Q ss_pred cccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhh-----hcccccceEEEcccC
Q 041497 265 KVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSL-----ANLSTTMTGIAFGNN 339 (568)
Q Consensus 265 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~~l~~L~l~~~ 339 (568)
..... +.. ....++|++|++++|.+.+..+..+ ..+ ..+..+++..+
T Consensus 264 ~~~~~--------------------------~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L-~~L~~~~~~~~ 315 (562)
T 3a79_B 264 KCSVK--------------------------LFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETAL-KSLMIEHVKNQ 315 (562)
T ss_dssp HHHHH--------------------------HHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSC-CEEEEEEEEEC
T ss_pred HHHHH--------------------------HHH-hhhcccccEEEEeccEeeccccchhhhcccccc-hheehhhcccc
Confidence 11000 000 0111244555555544443333222 111 11222222222
Q ss_pred cccCCCC-hhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCC
Q 041497 340 QISGFIP-DGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNC 418 (568)
Q Consensus 340 ~l~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 418 (568)
.+ ..| ..+..+- ...+|++|++++|.+.... ....+++|+.|++++|.+++..+..+.++
T Consensus 316 ~~--~~p~~~~~~~~---------------~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 376 (562)
T 3a79_B 316 VF--LFSKEALYSVF---------------AEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376 (562)
T ss_dssp CC--SSCHHHHHHHH---------------HTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSC
T ss_pred ee--ecChhhhhhhh---------------ccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhccc
Confidence 22 111 1111110 0134666666666654221 12456677777777777776666677777
Q ss_pred CCceEEEcccCCCCCCC--CCchhHHhhhceEEEccCCcccccCc-hhhhcCCCCcEEecCCCcccccCCCcccccccce
Q 041497 419 KNLILLTTRKNKPSGTM--PRQLPRIITLSVLLNLSDNLLSGHFP-AEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEY 495 (568)
Q Consensus 419 ~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~~l~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~ 495 (568)
++|++|++++|++.+.. +..+..+..+ +.|++++|.+++..| ..+..+++|++|++++|++++..|..+. ++|+.
T Consensus 377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~ 454 (562)
T 3a79_B 377 KRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKV 454 (562)
T ss_dssp SSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSE
T ss_pred CCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCE
Confidence 77777777777766422 2334444555 777888888876344 4578889999999999999877666554 79999
Q ss_pred eecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCcc
Q 041497 496 LCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWP 560 (568)
Q Consensus 496 L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 560 (568)
|++++|+++ .+|..+..+++|+.|++++|.++...+..+..+++|+.|++++|++.|.||..|-
T Consensus 455 L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp EECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred EECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 999999999 6666677999999999999999965555589999999999999999999997654
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.9e-41 Score=362.23 Aligned_cols=445 Identities=18% Similarity=0.207 Sum_probs=253.4
Q ss_pred CCCceeeccCCcccccCCcccCCCCCCcEEeC-CCCcCCCCCCcccccC-CCCc-----EEec----------cCCcccc
Q 041497 58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTL-TNNYFSGKIPTNLSRC-SNLV-----KFEA----------SNNKLAG 120 (568)
Q Consensus 58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l-~~n~~~~~~~~~~~~l-~~L~-----~L~l----------~~n~~~~ 120 (568)
.+++.|+++++.+.+.+|.+++++++|++|++ ++|.+++..|-..... ..+. .+.. ....+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46777888888887778888888888888888 6776653322110000 0000 0000 0000000
Q ss_pred cCchhh-----------cCcCcCceeeccc--ccCCCCCCcccCCCCCCCeEEeccCCCCC-----------------CC
Q 041497 121 ESPAEI-----------GNLLKFQLLNIAE--NHLRGQLPASIGNLSALQEINVNGNRLGG-----------------RI 170 (568)
Q Consensus 121 ~~~~~~-----------~~l~~L~~L~l~~--~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~ 170 (568)
..+..+ .....++.+.+.. |.+.+ +|..++++++|++|++++|.+.+ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 000000 1112233333332 45554 66667777777777777777765 25
Q ss_pred Ccccc--ccccCcEEeecccccccCCC-CCCCCCCccEEEeeccc-ccc-cCCCccc------CCCCCcceEeecCCccc
Q 041497 171 PSTRS--HVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNI-YHG-SLPLDIG------VNLPNLRFFIISGNNLT 239 (568)
Q Consensus 171 ~~~l~--~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~-~~~-~~~~~~~------~~~~~L~~L~l~~~~~~ 239 (568)
|..++ .+++|+.|++++|.+.+..| .+.++++|+.|++++|. +.+ .+|..+. ..+++|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 66655 66666666666666555555 55666666666666665 544 4443222 13345666666666555
Q ss_pred cccCc--cCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCc-ccEEEeccCcc
Q 041497 240 GSLQD--SLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTK-LEVLVLDSNRF 316 (568)
Q Consensus 240 ~~~~~--~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~ 316 (568)
.+|. .+..+++|+.|++++|.+. ..| .++.+++|+.|++++|.+..++. .+..+++ |+.|++++|.+
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~-------~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPE-------DFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCT-------TSCEECTTCCEEECCSSCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchH-------HHhhccccCCEEECcCCCC
Confidence 4444 5555556666666666555 333 45555555555555555553222 2444455 55555555555
Q ss_pred cCcCchhhhccc-ccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcc
Q 041497 317 GAVLPFSLANLS-TTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLT 395 (568)
Q Consensus 317 ~~~~~~~~~~~~-~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 395 (568)
..+ +..+.... .+++.|++++|.+.+.+|........ ..++
T Consensus 632 ~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~-------------------------------------~~~~ 673 (876)
T 4ecn_A 632 KYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD-------------------------------------YKGI 673 (876)
T ss_dssp CSC-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT-------------------------------------CCCC
T ss_pred CcC-chhhhccccCCCCEEECcCCcCCCccccchhhhcc-------------------------------------ccCC
Confidence 422 22222111 12444455544444333211111000 0122
Q ss_pred cccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhH--------HhhhceEEEccCCcccccCchhhh--
Q 041497 396 MLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPR--------IITLSVLLNLSDNLLSGHFPAEVG-- 465 (568)
Q Consensus 396 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~l~~~l~Ls~n~l~~~~~~~l~-- 465 (568)
+|+.|++++|.++......+..+++|+.|++++|.+. .+|..+.. +..+ +.|+|++|.++ .+|..+.
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L-~~L~Ls~N~L~-~lp~~l~~~ 750 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLL-TTIDLRFNKLT-SLSDDFRAT 750 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGC-CEEECCSSCCC-CCCGGGSTT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCc-cEEECCCCCCc-cchHHhhhc
Confidence 4444444444444221112234445555555555444 23322221 1234 77888888888 6677776
Q ss_pred cCCCCcEEecCCCcccccCCCccc-ccccceeeccc------ccccccCCccCcCCCCCCEEeCCCCccccCcCcccccc
Q 041497 466 KLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQD------NSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENL 538 (568)
Q Consensus 466 ~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 538 (568)
.+++|+.|+|++|++++ +|..+. +++|+.|+|++ |.+.+.+|..+.++++|+.|++++|.+ +.+|..+.
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-- 826 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-- 826 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--
T ss_pred cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--
Confidence 89999999999999996 777776 99999999976 778889999999999999999999999 46777665
Q ss_pred ccCCeeecccCcccccCCCC
Q 041497 539 SFLSFLNLSYNHFESKSLFV 558 (568)
Q Consensus 539 ~~L~~L~l~~n~i~~~~~~~ 558 (568)
++|+.|+|++|+|...-+..
T Consensus 827 ~~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 827 PQLYILDIADNPNISIDVTS 846 (876)
T ss_dssp SSSCEEECCSCTTCEEECGG
T ss_pred CCCCEEECCCCCCCccChHH
Confidence 69999999999998765544
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.2e-42 Score=365.66 Aligned_cols=455 Identities=16% Similarity=0.228 Sum_probs=304.2
Q ss_pred CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCC------C------CCCcccccCCCCcEEeccCCcccccCchh
Q 041497 58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFS------G------KIPTNLSRCSNLVKFEASNNKLAGESPAE 125 (568)
Q Consensus 58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~------~------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 125 (568)
.+++.|+++++.+.+.+|.+++++++|++|++++|.+. + .+|... +..|+ ++++.+.+.+..+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 47889999999999999999999999999999999762 1 122222 34455 666666665555544
Q ss_pred hcC-cCcCceeecccccCCCCCCcccCCCCCCCeEEec--cCCCCCCCCccccccccCcEEeeccccccc----------
Q 041497 126 IGN-LLKFQLLNIAENHLRGQLPASIGNLSALQEINVN--GNRLGGRIPSTRSHVRNLISFNVGLNQFSG---------- 192 (568)
Q Consensus 126 ~~~-l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~--~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---------- 192 (568)
+.. +.++..+++....+.. .....++.+.+. .|.+++ +|..++.+++|+.|++++|.+.+
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 432 2222222322111110 011122222222 233443 45555555555555555555554
Q ss_pred --------CCCCCC--CCCCccEEEeecccccccCCCcccCCCCCcceEeecCCc-ccc-ccCccCCCC------CCCCe
Q 041497 193 --------MFPPIN--NISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNN-LTG-SLQDSLSNA------TNLQK 254 (568)
Q Consensus 193 --------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~ 254 (568)
....+. ++++|+.|++++|.+.+.+|..+. ++++|++|++++|. +++ ..|..+..+ ++|++
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 222444 555666666666555555554444 56666666666665 554 444444333 56666
Q ss_pred EecCCCcccccccC--CccCCCCCcEEECCCCCCC-CcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccc
Q 041497 255 LDINRNLFSGKVSI--NFGGLQNLSWLNLGKNNLG-TRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTM 331 (568)
Q Consensus 255 L~L~~n~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 331 (568)
|++++|.++ ..|. .++.+++|++|++++|.+. .++ .+..+++|+.|++++|++. ..+..+......+
T Consensus 310 L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L 379 (636)
T 4eco_A 310 IYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--------AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQV 379 (636)
T ss_dssp EECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--------CCEEEEEESEEECCSSEEE-ECCTTSEEECTTC
T ss_pred EECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--------hhCCCCCCCEEECCCCccc-cccHhhhhhcccC
Confidence 666666666 3444 5666666666666666665 222 1445566667777666666 3334444443336
Q ss_pred eEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCcccc-------Cccccccccccc
Q 041497 332 TGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLG-------NLTMLTQRLLEV 404 (568)
Q Consensus 332 ~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~ 404 (568)
+.|++++|.++ .+|..+..+. +++|++|++++|.+.+..+..+. .+++|+.|++++
T Consensus 380 ~~L~Ls~N~l~-~lp~~~~~~~----------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 380 ENLSFAHNKLK-YIPNIFDAKS----------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp CEEECCSSCCS-SCCSCCCTTC----------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred cEEEccCCcCc-ccchhhhhcc----------------cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence 77777777666 3454444332 34688999999999888887777 788999999999
Q ss_pred ccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHh--------hhceEEEccCCcccccCchhhh--cCCCCcEEe
Q 041497 405 NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRII--------TLSVLLNLSDNLLSGHFPAEVG--KLKNLVSLD 474 (568)
Q Consensus 405 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--------~l~~~l~Ls~n~l~~~~~~~l~--~l~~L~~L~ 474 (568)
|.++...+..+..+++|++|++++|.+. .+|....... .+ +.|++++|.++ .+|..+. .+++|++|+
T Consensus 443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 443 NQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL-TSIDLRFNKLT-KLSDDFRATTLPYLVGID 519 (636)
T ss_dssp SCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC-CEEECCSSCCC-BCCGGGSTTTCTTCCEEE
T ss_pred CccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCc-cEEECcCCcCC-ccChhhhhccCCCcCEEE
Confidence 9998555455677999999999999998 5555443322 55 99999999999 6777776 999999999
Q ss_pred cCCCcccccCCCccc-ccccceeec------ccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecc
Q 041497 475 ISSNMFSGEIPTTLG-CTSLEYLCM------QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS 547 (568)
Q Consensus 475 ls~n~l~~~~~~~~~-~~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 547 (568)
+++|++++ +|..+. +++|+.|+| ++|.+.+.+|..+.++++|+.|++++|.+. .+|..+. ++|+.|+++
T Consensus 520 Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls 595 (636)
T 4eco_A 520 LSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIK 595 (636)
T ss_dssp CCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECC
T ss_pred CCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECc
Confidence 99999996 787777 999999999 567788899999999999999999999995 5676655 899999999
Q ss_pred cCcccccCCC
Q 041497 548 YNHFESKSLF 557 (568)
Q Consensus 548 ~n~i~~~~~~ 557 (568)
+|++.+--+.
T Consensus 596 ~N~l~~~~~~ 605 (636)
T 4eco_A 596 DNPNISIDLS 605 (636)
T ss_dssp SCTTCEEECT
T ss_pred CCCCccccHH
Confidence 9998875443
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.4e-41 Score=350.59 Aligned_cols=436 Identities=17% Similarity=0.191 Sum_probs=308.4
Q ss_pred CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497 34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 113 (568)
+++++|++++|.+.+..+..|..+++|++|++++|.+++..|.+|+++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 78999999999999988888999999999999999999888999999999999999999998 55655 8999999999
Q ss_pred cCCcccc-cCchhhcCcCcCceeecccccCCCCCCcccCCCCCC--CeEEeccCCC--CCCCCccccccc-cCcEEeecc
Q 041497 114 SNNKLAG-ESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSAL--QEINVNGNRL--GGRIPSTRSHVR-NLISFNVGL 187 (568)
Q Consensus 114 ~~n~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~l~-~L~~L~l~~ 187 (568)
++|++.+ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+. +...+++++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999986 467899999999999999999875 567778888 9999999998 667777777665 344567788
Q ss_pred cccccCCC--CCCCCCCccEEEeeccc-------ccccCCCcccCCCCCcceEeecCCccccccCccC---CCCCCCCeE
Q 041497 188 NQFSGMFP--PINNISSLEYIFIHRNI-------YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSL---SNATNLQKL 255 (568)
Q Consensus 188 ~~~~~~~~--~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L 255 (568)
|.+.+..+ .+..+++|+.+++++|. +.+.++ .+ ..+++|+.|+++++.+.+..+..+ ...++|++|
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KL-QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GG-GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hh-ccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 88776655 67889999999999986 544444 33 378999999999988775322211 124689999
Q ss_pred ecCCCcccccccCCc-----cCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhccccc
Q 041497 256 DINRNLFSGKVSINF-----GGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTT 330 (568)
Q Consensus 256 ~L~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 330 (568)
++++|.+.+..|..+ +.+++|+.+++++|.+ ..+.. .+ ..+...++|+.|++++|.+..... ....++
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~--~~-~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~ 325 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQS--YI-YEIFSNMNIKNFTVSGTRMVHMLC---PSKISP 325 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTH--HH-HHHHHTCCCSEEEEESSCCCCCCC---CSSCCC
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce-ecchh--hh-hcccccCceeEEEcCCCccccccc---hhhCCc
Confidence 999999987777766 6677777777777666 22211 00 011112456666666666544321 011123
Q ss_pred ceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCcccc--ccCccccCccccccccccccccc
Q 041497 331 MTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQG--TIPSFLGNLTMLTQRLLEVNDLL 408 (568)
Q Consensus 331 l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~ 408 (568)
++.|++++|.+++..|..+..+ ++|++|++++|.+++ ..+..+..+++|+.|++++|.++
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l------------------~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHL------------------TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCC------------------SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred ccEEEeECCccChhhhhhhccC------------------CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 5555555555554444443332 234444444444443 22233444555555555555544
Q ss_pred CCCCC-CccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCc
Q 041497 409 GNIPP-SIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTT 487 (568)
Q Consensus 409 ~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~ 487 (568)
+..+. .+..+++| +.|++++|.+++..+..+. ++|++|++++|+++ .+|..
T Consensus 388 ~~l~~~~~~~l~~L-------------------------~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~ 439 (520)
T 2z7x_B 388 YDEKKGDCSWTKSL-------------------------LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQ 439 (520)
T ss_dssp CCGGGCSCCCCTTC-------------------------CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGG
T ss_pred cccccchhccCccC-------------------------CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchh
Confidence 42222 23334444 5556666666544444433 68999999999998 67765
Q ss_pred cc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccC
Q 041497 488 LG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 530 (568)
Q Consensus 488 ~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 530 (568)
+. +++|+.|++++|+++...+..+..+++|+.|++++|++...
T Consensus 440 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 54 99999999999999854444588999999999999999864
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5e-40 Score=352.49 Aligned_cols=512 Identities=18% Similarity=0.138 Sum_probs=388.1
Q ss_pred EeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcc
Q 041497 39 LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKL 118 (568)
Q Consensus 39 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 118 (568)
.+-++..+..++ ..+- +++++|++++|.++...+.+|.++++|++|++++|.++++.+++|.++++|++|+|++|++
T Consensus 36 ~~c~~~~l~~vP-~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 36 YQCMELNFYKIP-DNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EECTTSCCSSCC-SSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcCccC-CCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 355555555443 2221 3799999999999977778999999999999999999977788899999999999999999
Q ss_pred cccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCC-CCCccccccccCcEEeecccccccCCC-C
Q 041497 119 AGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGG-RIPSTRSHVRNLISFNVGLNQFSGMFP-P 196 (568)
Q Consensus 119 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~ 196 (568)
+...+..|.++++|++|++++|.+.+..+..|+++++|++|++++|.+.. ..|..+..+++|+.|++++|.+.+..+ .
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 97777889999999999999999997777789999999999999999875 467888999999999999999987655 4
Q ss_pred CCCCCC----ccEEEeecccccccCCCcccCCCCCcceEeecCCcccc-ccCccCCCCCCCCeEecCCCcc------ccc
Q 041497 197 INNISS----LEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTG-SLQDSLSNATNLQKLDINRNLF------SGK 265 (568)
Q Consensus 197 l~~~~~----L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~L~~n~~------~~~ 265 (568)
+..++. ...++++.+.+. .++...+ ....+..+++.++.... ..+..+..++.++...+..+.. ...
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ccchhhhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 444433 345677777765 3444444 34456778888775432 2233445566666665543322 222
Q ss_pred ccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCC
Q 041497 266 VSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFI 345 (568)
Q Consensus 266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~ 345 (568)
....+.....+....+..+....... .....+.....++.+.+.++.+....+... . ..++.|++.+|.+....
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~-~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLD---GIIDLFNCLTNVSSFSLVSVTIERVKDFSY--N-FGWQHLELVNCKFGQFP 344 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEE---ECTTTTGGGTTCSEEEEESCEEEECGGGGS--C-CCCSEEEEESCEESSCC
T ss_pred cccccccccchhhhhhhhhhhccccc---chhhhhhhhccccccccccccccccccccc--c-hhhhhhhcccccccCcC
Confidence 22334445555555554433222111 112235566788999998887766543322 2 34899999999887665
Q ss_pred ChhhhhhccccccCccccccch----hhccCCCeeECccCccccc--cCccccCcccccccccccccccCCCCCCccCCC
Q 041497 346 PDGIANLVNLNALGVEFNQLAV----TILKSLQMLFLHENVLQGT--IPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCK 419 (568)
Q Consensus 346 ~~~~~~~~~L~~l~l~~~~~~~----~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 419 (568)
+.. +..|+.+++..+.... ..+++|+.++++.|.+... .+..+..+.+|+.+++..+.... .+..+..++
T Consensus 345 ~~~---l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~ 420 (635)
T 4g8a_A 345 TLK---LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLE 420 (635)
T ss_dssp CCB---CTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCT
T ss_pred ccc---chhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccc
Confidence 544 4456666666665432 2389999999999988643 44556778899999999988764 445678899
Q ss_pred CceEEEcccCCCCCCCCC-chhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcc-cccCCCccc-cccccee
Q 041497 420 NLILLTTRKNKPSGTMPR-QLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMF-SGEIPTTLG-CTSLEYL 496 (568)
Q Consensus 420 ~L~~L~l~~~~~~~~~~~-~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l-~~~~~~~~~-~~~L~~L 496 (568)
+|+.+++..+......+. .+..+..+ +.+++++|.+.+..+..+..++.|+.|++++|.+ ....|..+. +++|++|
T Consensus 421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l-~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L 499 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499 (635)
T ss_dssp TCCEEECTTSEEESTTSSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred cccchhhhhcccccccccccccccccc-ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEE
Confidence 999999998876655544 44555555 8999999999988888999999999999999975 445777777 9999999
Q ss_pred ecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCcccc-cccc
Q 041497 497 CMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFV-DEIK 566 (568)
Q Consensus 497 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~-~~~~ 566 (568)
+|++|++++..|..|.++++|+.|++++|.+++..+..|..+++|++|++++|+|++..|..++.. +.|+
T Consensus 500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999887544 4554
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-38 Score=325.80 Aligned_cols=397 Identities=15% Similarity=0.154 Sum_probs=217.3
Q ss_pred eeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccc-cCchhhcCcCcCceeecccc
Q 041497 62 SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAG-ESPAEIGNLLKFQLLNIAEN 140 (568)
Q Consensus 62 ~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~ 140 (568)
.++.+++.++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.. ..+..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 3444444444 3343 1 1455666666665554445555555555555555555432 22334455555555555555
Q ss_pred cCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCc
Q 041497 141 HLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLD 220 (568)
Q Consensus 141 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 220 (568)
.+.+..|..++++++|++|++++|.+.+..+.. ..+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------------~~~~---------------------- 126 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG---------------------NFFK---------------------- 126 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS---------------------STTT----------------------
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCc---------------------cccc----------------------
Confidence 554444444444444444444444433211110 0122
Q ss_pred ccCCCCCcceEeecCCccccccCcc-CCCCCCCCeEecCCCcccccccCCccCC--CCCcEEECCCCCCCCcCCCCch--
Q 041497 221 IGVNLPNLRFFIISGNNLTGSLQDS-LSNATNLQKLDINRNLFSGKVSINFGGL--QNLSWLNLGKNNLGTRTANDLD-- 295 (568)
Q Consensus 221 ~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~L~~n~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-- 295 (568)
.+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+ .+|+.+++++|.+.........
T Consensus 127 ---~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~ 203 (455)
T 3v47_A 127 ---PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203 (455)
T ss_dssp ---TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH
T ss_pred ---CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccc
Confidence 3334444444444444333332 3444455555555555444444433332 3445555555544443322111
Q ss_pred hhhcccCCCcccEEEeccCcccCcCchhhhccc--ccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCC
Q 041497 296 FITLLTNCTKLEVLVLDSNRFGAVLPFSLANLS--TTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSL 373 (568)
Q Consensus 296 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L 373 (568)
....+..+++|+.|++++|++.+..+..+.... .+++.+++++|...+..
T Consensus 204 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---------------------------- 255 (455)
T 3v47_A 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS---------------------------- 255 (455)
T ss_dssp HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC----------------------------
T ss_pred ccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc----------------------------
Confidence 111123445666666666666554443333221 22444444444322110
Q ss_pred CeeECccCccccccCccccC--cccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEc
Q 041497 374 QMLFLHENVLQGTIPSFLGN--LTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNL 451 (568)
Q Consensus 374 ~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~L 451 (568)
+..+.+.+.....+.. .++|+.+++++|.+++..+..+..+++| +.|++
T Consensus 256 ----~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------------~~L~L 306 (455)
T 3v47_A 256 ----FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL-------------------------EQLTL 306 (455)
T ss_dssp ----TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTC-------------------------CEEEC
T ss_pred ----cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCC-------------------------CEEEC
Confidence 0001111111111111 2345555555555554445555555555 55566
Q ss_pred cCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccC
Q 041497 452 SDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 530 (568)
Q Consensus 452 s~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 530 (568)
++|.+++..+..+..+++|++|++++|.+++..+..+. +++|+.|+|++|.+++..|..|..+++|++|++++|.+++.
T Consensus 307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence 66666666677788889999999999998877777777 89999999999999888888899999999999999999987
Q ss_pred cCccccccccCCeeecccCcccccCCCCccccccc
Q 041497 531 IPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEI 565 (568)
Q Consensus 531 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~ 565 (568)
.++.|..+++|+.|++++|++.|.||....+..|+
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 421 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred CHhHhccCCcccEEEccCCCcccCCCcchHHHHHH
Confidence 77788899999999999999999999654444444
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.7e-37 Score=316.16 Aligned_cols=369 Identities=17% Similarity=0.172 Sum_probs=246.3
Q ss_pred CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCC-CCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceee
Q 041497 58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSG-KIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLN 136 (568)
Q Consensus 58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 136 (568)
++|++|++++|.+.+..|..+.++++|++|++++|.+.+ ..+..|.++++|++|++++|++....|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 567777777777776667777777777778777777653 3355677777788888887777766677777777888888
Q ss_pred cccccCCCCCCcc--cCCCCCCCeEEeccCCCCCCCCcc-ccccccCcEEeecccccccCCC-CCCCCCCccEEEeeccc
Q 041497 137 IAENHLRGQLPAS--IGNLSALQEINVNGNRLGGRIPST-RSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNI 212 (568)
Q Consensus 137 l~~~~l~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~ 212 (568)
+++|.+.+..+.. ++.+++|++|++++|.+.+..|.. +..+++|+.|++++|.+.+..+ .+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l------------ 177 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF------------ 177 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG------------
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc------------
Confidence 8877776533333 777788888888888777655654 6677777777777776665433 22222
Q ss_pred ccccCCCcccCCCCCcceEeecCCccccccCcc--------CCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCC
Q 041497 213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDS--------LSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKN 284 (568)
Q Consensus 213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~ 284 (568)
..+.++.+++++|.+.+..+.. +..+++|++|++++|.+.+..+..+...
T Consensus 178 -----------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~----------- 235 (455)
T 3v47_A 178 -----------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA----------- 235 (455)
T ss_dssp -----------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH-----------
T ss_pred -----------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc-----------
Confidence 1123344444444433322211 2234556666666666554444333211
Q ss_pred CCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccc
Q 041497 285 NLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQ 364 (568)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~ 364 (568)
...++|+.+++++|...+.. +..+.+.+..+..+..+.
T Consensus 236 ----------------~~~~~L~~L~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~----------- 273 (455)
T 3v47_A 236 ----------------IAGTKIQSLILSNSYNMGSS---------------FGHTNFKDPDNFTFKGLE----------- 273 (455)
T ss_dssp ----------------TTTCCEEEEECTTCTTTSCC---------------TTCCSSCCCCTTTTGGGT-----------
T ss_pred ----------------ccccceeeEeeccccccccc---------------cchhhhccCccccccccc-----------
Confidence 11234445555444332211 001111111111222211
Q ss_pred cchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhh
Q 041497 365 LAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIIT 444 (568)
Q Consensus 365 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 444 (568)
.++|+++++++|.+.+..+..+..+++|+.|++++|++++..+..+.++++|++|++++|.
T Consensus 274 -----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-------------- 334 (455)
T 3v47_A 274 -----ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-------------- 334 (455)
T ss_dssp -----TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--------------
T ss_pred -----ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc--------------
Confidence 3578889999998888888889999999999999999988888888888888666555554
Q ss_pred hceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCC
Q 041497 445 LSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLS 523 (568)
Q Consensus 445 l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 523 (568)
+++..+..+..+++|++|++++|++++..|..+. +++|++|++++|++++..+..|..+++|+.|+++
T Consensus 335 -----------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 335 -----------LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp -----------CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred -----------cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence 4445567788889999999999999877787777 8999999999999997777778899999999999
Q ss_pred CCccccCcC
Q 041497 524 RNNLSGHIP 532 (568)
Q Consensus 524 ~n~l~~~~~ 532 (568)
+|++++..|
T Consensus 404 ~N~l~~~~~ 412 (455)
T 3v47_A 404 TNPWDCSCP 412 (455)
T ss_dssp SSCBCCCTT
T ss_pred CCCcccCCC
Confidence 999987665
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.6e-37 Score=325.34 Aligned_cols=435 Identities=18% Similarity=0.159 Sum_probs=294.6
Q ss_pred CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497 34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 113 (568)
+.+++|++++|.+.+..+..|..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 67999999999999988889999999999999999999888999999999999999999998 56655 8999999999
Q ss_pred cCCccccc-CchhhcCcCcCceeecccccCCCCCCcccCCCCCC--CeEEeccCCC--CCCCCccccccc-cCcEEeecc
Q 041497 114 SNNKLAGE-SPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSAL--QEINVNGNRL--GGRIPSTRSHVR-NLISFNVGL 187 (568)
Q Consensus 114 ~~n~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~l~-~L~~L~l~~ 187 (568)
++|++... .|..|.++++|++|++++|.+.+. .+..+++| ++|++++|.+ .+..|..+..+. ..-.+++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 99999863 468999999999999999999863 45555666 9999999998 777788877754 122567788
Q ss_pred cccccCCC--CCCCCCCccEEEeeccc-----ccccCCCcccCCCCCcceEeecCCcccccc----CccCCCCCCCCeEe
Q 041497 188 NQFSGMFP--PINNISSLEYIFIHRNI-----YHGSLPLDIGVNLPNLRFFIISGNNLTGSL----QDSLSNATNLQKLD 256 (568)
Q Consensus 188 ~~~~~~~~--~l~~~~~L~~L~l~~~~-----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~ 256 (568)
|.+.+..+ .+..+++|+.++++.|. +.+.+ .. +...+.|+.++++++.+.+.. +.. ...++|++|+
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~ 282 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SE-LTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLN 282 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HH-HHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHH-HH-HhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEE
Confidence 88776555 56788999999999874 11111 11 236788888888877655421 111 1235899999
Q ss_pred cCCCcccccccCCc-----cCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccc
Q 041497 257 INRNLFSGKVSINF-----GGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTM 331 (568)
Q Consensus 257 L~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 331 (568)
+++|.+.+..|..+ ..++.|+.+++..+.+ ..+. .....+....+|+.|++++|.+..... ...
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~---~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~---- 351 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSK---EALYSVFAEMNIKMLSISDTPFIHMVC---PPS---- 351 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCH---HHHHHHHHTCCCSEEEEESSCCCCCCC---CSS----
T ss_pred EeccEeeccccchhhhcccccchheehhhccccee-ecCh---hhhhhhhccCcceEEEccCCCcccccC---ccC----
Confidence 99999886666554 3444444444444433 1110 000011112345555555554433210 011
Q ss_pred eEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCC-
Q 041497 332 TGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGN- 410 (568)
Q Consensus 332 ~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~- 410 (568)
+++|++|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 352 --------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 393 (562)
T 3a79_B 352 --------------------------------------PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393 (562)
T ss_dssp --------------------------------------CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT
T ss_pred --------------------------------------CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc
Confidence 23445555555555544444555555555555555555432
Q ss_pred -CCCCccCCCCceEEEcccCCCCCCCCCc-hhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcc
Q 041497 411 -IPPSIGNCKNLILLTTRKNKPSGTMPRQ-LPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTL 488 (568)
Q Consensus 411 -~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~ 488 (568)
.+..+.++++|+.|++++|.+.+.++.. +..+..+ +.|++++|.+++..+..+. ++|++|++++|+++ .+|..+
T Consensus 394 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~ 469 (562)
T 3a79_B 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI-LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDV 469 (562)
T ss_dssp HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC-CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTT
T ss_pred cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC-CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhh
Confidence 1234455555555555555555433332 3333333 6666666666654443332 68999999999988 566554
Q ss_pred c-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccC
Q 041497 489 G-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 530 (568)
Q Consensus 489 ~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 530 (568)
. +++|+.|++++|+++...+..+..+++|+.|++++|++.+.
T Consensus 470 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp TSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred cCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 4 89999999999999844444488899999999999998764
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.8e-37 Score=310.94 Aligned_cols=410 Identities=22% Similarity=0.227 Sum_probs=194.4
Q ss_pred CCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceee
Q 041497 57 LSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLN 136 (568)
Q Consensus 57 ~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 136 (568)
.++|++|++++|.+ +.+|.+++++++|++|++++|.+++..|..++.+++|+.+++.+|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 45666666666666 45666666666666666666666555666666555555554443321 3467777
Q ss_pred cccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeeccccccc
Q 041497 137 IAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGS 216 (568)
Q Consensus 137 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 216 (568)
+++|.+++ +|. -.++|++|++++|.+.+ +|.. .++|+.|++++|.+.+.... .++|++|++++|.+.+
T Consensus 78 l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 78 LNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp CTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-
T ss_pred ecCCcccc-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-
Confidence 77777764 333 13677788888777764 5543 36777777777766643211 1567777777766663
Q ss_pred CCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchh
Q 041497 217 LPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDF 296 (568)
Q Consensus 217 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 296 (568)
+| . +..+++|++|++++|.+++ .|.. .++|++|++++|.+.+. + .++.+++|++|++++|.+...+.
T Consensus 146 lp-~-~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~~----- 212 (454)
T 1jl5_A 146 LP-E-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLPD----- 212 (454)
T ss_dssp CC-C-CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCC-----
T ss_pred Cc-c-cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCCC-----
Confidence 55 2 3366677777777776664 2322 24677777777766653 2 36666677777777666655332
Q ss_pred hhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCee
Q 041497 297 ITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQML 376 (568)
Q Consensus 297 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L 376 (568)
..++|+.|++++|.+..+. .+.... +++.|++++|.+++. |.. +++|++|
T Consensus 213 -----~~~~L~~L~l~~n~l~~lp--~~~~l~-~L~~L~l~~N~l~~l-~~~---------------------~~~L~~L 262 (454)
T 1jl5_A 213 -----LPLSLESIVAGNNILEELP--ELQNLP-FLTTIYADNNLLKTL-PDL---------------------PPSLEAL 262 (454)
T ss_dssp -----CCTTCCEEECCSSCCSSCC--CCTTCT-TCCEEECCSSCCSSC-CSC---------------------CTTCCEE
T ss_pred -----CcCcccEEECcCCcCCccc--ccCCCC-CCCEEECCCCcCCcc-ccc---------------------ccccCEE
Confidence 1245666666666665432 133332 366666666655542 211 3455666
Q ss_pred ECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcc
Q 041497 377 FLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLL 456 (568)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l 456 (568)
++++|.+++ ++.. .++|+.|++++|.+++... ..++|++|++++|.+.+.. .....++.|++++|++
T Consensus 263 ~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 263 NVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKL 329 (454)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCC
T ss_pred ECCCCcccc-cCcc---cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcc
Confidence 666665553 2221 2556666666666554211 0145666666666655311 1111226666666666
Q ss_pred cccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecccccccc--cCCccCcCC-------------CCCCEEe
Q 041497 457 SGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTG--SIPSTLSSL-------------KSITELD 521 (568)
Q Consensus 457 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l-------------~~L~~L~ 521 (568)
++ .|.. +++|++|++++|+++ .+|. .+++|+.|++++|++++ .+|.++..+ ++|+.|+
T Consensus 330 ~~-lp~~---~~~L~~L~L~~N~l~-~lp~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ 402 (454)
T 1jl5_A 330 IE-LPAL---PPRLERLIASFNHLA-EVPE--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402 (454)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------
T ss_pred cc-cccc---CCcCCEEECCCCccc-cccc--hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEE
Confidence 64 3322 456666666666666 4444 35666666666666665 455555555 7899999
Q ss_pred CCCCcccc--CcCccccccccCCeeecccCcccccCCCCc
Q 041497 522 LSRNNLSG--HIPQYLENLSFLSFLNLSYNHFESKSLFVW 559 (568)
Q Consensus 522 l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 559 (568)
+++|.+++ .+| ++++.|.+.+|.+.+..|...
T Consensus 403 ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~ 436 (454)
T 1jl5_A 403 VETNPLREFPDIP------ESVEDLRMNSERVVDPYEFAH 436 (454)
T ss_dssp ----------------------------------------
T ss_pred CCCCcCCccccch------hhHhheeCcCcccCCccccCH
Confidence 99998886 333 356777788888888877553
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.6e-37 Score=296.86 Aligned_cols=280 Identities=26% Similarity=0.422 Sum_probs=247.3
Q ss_pred CcccCCCCCCCCCCCCCCCCCce--eeeceeCCCC--CeEEEEeccCCcccc--ccCCcccCCCCCceeeccC-Cccccc
Q 041497 1 MKSQLQDPLGVTSSWNNSINLCQ--WTGVTCGHRH--QRVIGLDLRHQSIGG--FLSPFVGNLSFLRSINLAN-NSFRAE 73 (568)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~c~--~~~~~c~~~~--~~i~~L~l~~~~i~~--~~~~~~~~~~~L~~L~ls~-~~~~~~ 73 (568)
||.++.||. +++.|..+.+||. |.||.|.... .++++|+++++.+.+ ..+..+.++++|++|++++ |.+.+.
T Consensus 14 ~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~ 92 (313)
T 1ogq_A 14 IKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92 (313)
T ss_dssp HHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC
T ss_pred HHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc
Confidence 577888887 8899988889999 9999997544 789999999999998 7888999999999999995 899888
Q ss_pred CCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCC
Q 041497 74 IPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNL 153 (568)
Q Consensus 74 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 153 (568)
+|..+.++++|++|++++|.+++..|..|..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+
T Consensus 93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 172 (313)
T 1ogq_A 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence 99999999999999999999988899999999999999999999998899999999999999999999998889999999
Q ss_pred C-CCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceE
Q 041497 154 S-ALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFF 231 (568)
Q Consensus 154 ~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 231 (568)
+ +|++|++++|.+.+..|..+..++ |+.|++++|.+.+..+ .+..+++|+.|++++|.+.+..+. +..+++|++|
T Consensus 173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L 249 (313)
T 1ogq_A 173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGL 249 (313)
T ss_dssp CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEE
T ss_pred hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEE
Confidence 8 999999999999888899998887 9999999999987766 778888899999988888755554 3367888888
Q ss_pred eecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCC
Q 041497 232 IISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN 285 (568)
Q Consensus 232 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 285 (568)
++++|.+.+..|.++..+++|+.|++++|.+++..|.. ..+++|+.+++.+|+
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 88888888778888888888888888888888766664 677788888887776
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-35 Score=301.16 Aligned_cols=411 Identities=21% Similarity=0.225 Sum_probs=205.1
Q ss_pred CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCC-------------cEEeCCCCcCCCCCC
Q 041497 33 HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRL-------------QNLTLTNNYFSGKIP 99 (568)
Q Consensus 33 ~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L-------------~~L~l~~n~~~~~~~ 99 (568)
..++++|++++|.+ +.+|..++++++|++|++++|.+.+.+|.+++++.+| ++|++++|.++ .+|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence 36789999999999 6788889999999999999999999999999998875 88888888887 344
Q ss_pred cccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCcccccccc
Q 041497 100 TNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRN 179 (568)
Q Consensus 100 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 179 (568)
.. .++|++|++++|.+++ +|.. +++|++|++++|.+.+ ++. + .++|++|++++|.+.+ +| .+..+++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~-~--~~~L~~L~L~~n~l~~-lp-~~~~l~~ 154 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGVSNNQLEK-LP-ELQNSSF 154 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC-C--CCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence 42 3688888888888875 5533 4788888888887764 222 1 1678888888888874 66 5778888
Q ss_pred CcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCC
Q 041497 180 LISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINR 259 (568)
Q Consensus 180 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~ 259 (568)
|+.|++++|.+.+.... .++|+.|++++|.+.+ ++ . +..+++|+.|++++|.+.+. +.. .++|++|++++
T Consensus 155 L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-~-~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~ 224 (454)
T 1jl5_A 155 LKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LP-E-LQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGN 224 (454)
T ss_dssp CCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CC-C-CTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCS
T ss_pred CCEEECCCCcCcccCCC---cccccEEECcCCcCCc-Cc-c-ccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcC
Confidence 88888888877653222 2467777777776653 44 2 23666777777777766642 221 24677777777
Q ss_pred CcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccC
Q 041497 260 NLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNN 339 (568)
Q Consensus 260 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 339 (568)
|.+..+ + .++.+++|++|++++|.+...+. .+++|+.|++++|++.++.. ...+++.|++++|
T Consensus 225 n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l~~----------~~~~L~~L~l~~N~l~~l~~-----~~~~L~~L~ls~N 287 (454)
T 1jl5_A 225 NILEEL-P-ELQNLPFLTTIYADNNLLKTLPD----------LPPSLEALNVRDNYLTDLPE-----LPQSLTFLDVSEN 287 (454)
T ss_dssp SCCSSC-C-CCTTCTTCCEEECCSSCCSSCCS----------CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSS
T ss_pred CcCCcc-c-ccCCCCCCCEEECCCCcCCcccc----------cccccCEEECCCCcccccCc-----ccCcCCEEECcCC
Confidence 766633 3 25666667777777666655332 12556666666666655321 1133555666555
Q ss_pred cccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCc-ccccccccccccccCCCCCCccCC
Q 041497 340 QISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNL-TMLTQRLLEVNDLLGNIPPSIGNC 418 (568)
Q Consensus 340 ~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~ 418 (568)
.+++.. ...++|++|++++|.+++. + .+ ++|+.|++++|++++ .|.. +
T Consensus 288 ~l~~l~----------------------~~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~ 336 (454)
T 1jl5_A 288 IFSGLS----------------------ELPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---P 336 (454)
T ss_dssp CCSEES----------------------CCCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---C
T ss_pred ccCccc----------------------CcCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---C
Confidence 554311 1124566666666665531 1 12 356666666666654 2222 3
Q ss_pred CCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccc--cCchhhhcCCCCcEEecCCCcccccCCCccccccccee
Q 041497 419 KNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSG--HFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYL 496 (568)
Q Consensus 419 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L 496 (568)
++|++|++++|.+.+ +|. .+..+ +.|++++|.+++ ..|..+. .| +.|.+.+.+|.. +++|+.|
T Consensus 337 ~~L~~L~L~~N~l~~-lp~---~l~~L-~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~~--~~~L~~L 401 (454)
T 1jl5_A 337 PRLERLIASFNHLAE-VPE---LPQNL-KQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPEL--PQNLKQL 401 (454)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSSCCCCCTTCC------EE--ECCC-----------------
T ss_pred CcCCEEECCCCcccc-ccc---hhhhc-cEEECCCCCCCcCCCChHHHH------hh--hhcccccccccc--cCcCCEE
Confidence 556666666665552 333 11222 555666666554 3333322 12 223333344432 4788888
Q ss_pred ecccccccc--cCCccCcCCCCCCEEeCCCCccccCcCccccc
Q 041497 497 CMQDNSFTG--SIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 537 (568)
Q Consensus 497 ~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 537 (568)
++++|.+++ .+| +.++.|++.+|.+.+..+.....
T Consensus 402 ~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 402 HVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp -------------------------------------------
T ss_pred ECCCCcCCccccch------hhHhheeCcCcccCCccccCHHH
Confidence 888888875 333 35677778888877665544433
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=297.34 Aligned_cols=308 Identities=20% Similarity=0.206 Sum_probs=226.3
Q ss_pred CCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCc
Q 041497 226 PNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTK 305 (568)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 305 (568)
+.++.|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+...+.. .+..+++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG------VFTGLSN 105 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT------SSTTCTT
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc------cccCCCC
Confidence 4566677777766666666666677777777777776666666666677777777777766655443 2456667
Q ss_pred ccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCcccc
Q 041497 306 LEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQG 385 (568)
Q Consensus 306 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~ 385 (568)
|+.|++++|++.+..+..+..+.. |+.|++++|.+.+..+..|..+ ++|++|++++|.+++
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l------------------~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYISHRAFSGL------------------NSLEQLTLEKCNLTS 166 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTCCEECTTSSTTC------------------TTCCEEEEESCCCSS
T ss_pred CCEEECCCCccccCChhHcccccc-CCEEECCCCccceeChhhccCC------------------CCCCEEECCCCcCcc
Confidence 777777777666665555555543 6667777666666555555554 345666666666665
Q ss_pred ccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhh
Q 041497 386 TIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVG 465 (568)
Q Consensus 386 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~ 465 (568)
..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++........+ +.|++++|.+++..+..+.
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL-TSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC-SEEEEESSCCCSCCHHHHT
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc-cEEECcCCcccccCHHHhc
Confidence 444556677777777777777776666677777777777777777666665555544455 8888888888866556788
Q ss_pred cCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCee
Q 041497 466 KLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFL 544 (568)
Q Consensus 466 ~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 544 (568)
.+++|++|++++|.+++..+..+. +++|+.|+|++|.+++..+..|..+++|+.|++++|.++...+..|..+++|+.|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence 999999999999999877777776 8999999999999998888899999999999999999998888888999999999
Q ss_pred ecccCcccccCCCCc
Q 041497 545 NLSYNHFESKSLFVW 559 (568)
Q Consensus 545 ~l~~n~i~~~~~~~~ 559 (568)
++++|++.|.|+..|
T Consensus 326 ~l~~N~l~c~c~~~~ 340 (477)
T 2id5_A 326 ILDSNPLACDCRLLW 340 (477)
T ss_dssp ECCSSCEECSGGGHH
T ss_pred EccCCCccCccchHh
Confidence 999999999988765
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.4e-34 Score=288.48 Aligned_cols=357 Identities=19% Similarity=0.169 Sum_probs=210.9
Q ss_pred cccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcC
Q 041497 53 FVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKF 132 (568)
Q Consensus 53 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 132 (568)
.+.++++|++|++++|.+++ +| ++..+++|++|++++|.+++. | ++.+++|++|++++|++++. + +.++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 45666677777777766664 34 466667777777777766643 2 66667777777777766642 2 5666777
Q ss_pred ceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeeccc
Q 041497 133 QLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNI 212 (568)
Q Consensus 133 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 212 (568)
++|++++|.+.+. + ++.+++|++|++++|.+.+ + .++.+++|+.|++++|...+.. .+..+++|+.|++++|.
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCc
Confidence 7777777766642 2 6666777777777776654 2 2566666777777766443333 45566677777777776
Q ss_pred ccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCC
Q 041497 213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTAN 292 (568)
Q Consensus 213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 292 (568)
+.+ ++ ...+++|+.|++++|.+++. .+..+++|+.|++++|.++++ | ++.+++|+.|++++|.+...+
T Consensus 182 l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~-- 249 (457)
T 3bz5_A 182 ITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD-- 249 (457)
T ss_dssp CCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC--
T ss_pred cce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC--
Confidence 653 33 23667777777777777754 366777788888888877763 3 667777888888887777654
Q ss_pred CchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccC
Q 041497 293 DLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKS 372 (568)
Q Consensus 293 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 372 (568)
...+++|+.++++.+. ++.+++++|.+.+..| +..+++|+.|++++|.....
T Consensus 250 -------~~~l~~L~~L~l~~n~---------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~---- 301 (457)
T 3bz5_A 250 -------VSTLSKLTTLHCIQTD---------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL---- 301 (457)
T ss_dssp -------CTTCTTCCEEECTTCC---------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE----
T ss_pred -------HHHCCCCCEEeccCCC---------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccce----
Confidence 2356777777776653 5556667776555444 34455666666665543221
Q ss_pred CCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEcc
Q 041497 373 LQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLS 452 (568)
Q Consensus 373 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls 452 (568)
+....+.++.. .+..+++|+.|++++|++++. .+.++++|+.|++++|++.+. ..+ ..++++
T Consensus 302 ---l~~~~~~L~~L---~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l--------~~L-~~L~l~ 363 (457)
T 3bz5_A 302 ---LDCQAAGITEL---DLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF--------SSV-GKIPAL 363 (457)
T ss_dssp ---EECTTCCCSCC---CCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC--------TTG-GGSSGG
T ss_pred ---eccCCCcceEe---chhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc--------ccc-cccccc
Confidence 11111121110 133345666666666666653 255666666666666665531 111 333445
Q ss_pred CCcccccCchhhhcCCCCcEEecCCCcccccCCCc
Q 041497 453 DNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTT 487 (568)
Q Consensus 453 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~ 487 (568)
+|.+.|. ..+..|..+++++|++++.+|..
T Consensus 364 ~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 364 NNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp GTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 5544432 23334444555555555554443
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-33 Score=285.77 Aligned_cols=363 Identities=18% Similarity=0.176 Sum_probs=242.8
Q ss_pred ccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcc
Q 041497 70 FRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPAS 149 (568)
Q Consensus 70 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 149 (568)
.....+..++++++|++|++++|.+++ .| .+..+++|++|++++|++++. + +..+++|++|++++|.+.+. .
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~ 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---D 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---C
T ss_pred cCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---e
Confidence 334455577889999999999999985 45 689999999999999998853 3 78899999999999998864 2
Q ss_pred cCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcc
Q 041497 150 IGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLR 229 (568)
Q Consensus 150 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 229 (568)
++.+++|++|++++|.+.+ ++ +..+++|+.|++++|.+.+. .+..+++|+.|+++.|...+.++ +..+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLD---VTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCC
T ss_pred cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCcccccc---cccCCcCC
Confidence 8889999999999998875 33 78888899999988888764 46677777777777775444442 22566777
Q ss_pred eEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEE
Q 041497 230 FFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309 (568)
Q Consensus 230 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 309 (568)
.|++++|.+++. + +..+++|+.|++++|.+++. .++.+++|++|++++|.+..++ +..+++|+.|
T Consensus 174 ~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---------~~~l~~L~~L 238 (457)
T 3bz5_A 174 TLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---------VTPLTQLTYF 238 (457)
T ss_dssp EEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---------CTTCTTCSEE
T ss_pred EEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---------ccccCCCCEE
Confidence 777777776653 2 55666777777777776644 2556666666666666665532 3355666666
Q ss_pred EeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCc
Q 041497 310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPS 389 (568)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 389 (568)
++++|++++... ..+++|+.++++.+ +|+.+++++|.+.+.++
T Consensus 239 ~l~~N~l~~~~~----------------------------~~l~~L~~L~l~~n--------~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 239 DCSVNPLTELDV----------------------------STLSKLTTLHCIQT--------DLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp ECCSSCCSCCCC----------------------------TTCTTCCEEECTTC--------CCSCCCCTTCTTCCEEE-
T ss_pred EeeCCcCCCcCH----------------------------HHCCCCCEEeccCC--------CCCEEECCCCccCCccc-
Confidence 666666555321 22333444444332 45667777777655544
Q ss_pred cccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCC
Q 041497 390 FLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKN 469 (568)
Q Consensus 390 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~ 469 (568)
+..+++|+.|++++|...+..+. ..+.|+.+++++|. .+ +.|++++|++++. .++.+++
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~-------------~L-~~L~L~~N~l~~l---~l~~l~~ 340 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNP-------------KL-VYLYLNNTELTEL---DVSHNTK 340 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCT-------------TC-CEEECTTCCCSCC---CCTTCTT
T ss_pred -ccccccCCEEECCCCcccceecc---CCCcceEechhhcc-------------cC-CEEECCCCccccc---ccccCCc
Confidence 45677888888888876655543 23455555665552 22 6677777777753 2667777
Q ss_pred CcEEecCCCcccccCCCcccccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCc
Q 041497 470 LVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 533 (568)
Q Consensus 470 L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 533 (568)
|+.|++++|++++ ++.|+.|++++|.+.+. .++..|+.+++++|.+++.+|.
T Consensus 341 L~~L~l~~N~l~~-------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 341 LKSLSCVNAHIQD-------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CSEEECCSSCCCB-------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred CcEEECCCCCCCC-------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 7777777777764 24455556666655543 2334455556666666655554
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-32 Score=283.16 Aligned_cols=345 Identities=29% Similarity=0.389 Sum_probs=182.8
Q ss_pred CCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCcee
Q 041497 56 NLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLL 135 (568)
Q Consensus 56 ~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 135 (568)
.++++++|+++++.+. .+| .+..+++|++|++++|.+++. +. +..+++|++|++++|++....+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 4566677777766665 233 356666777777777766633 32 6666677777776666653322 6666666666
Q ss_pred ecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccc
Q 041497 136 NIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHG 215 (568)
Q Consensus 136 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 215 (568)
++++|.+.+. + .+..+++|++|++++|.+.. . ..+..+++|+.|++. +.+.+. +.+.
T Consensus 118 ~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~-~~~~~~-~~~~----------------- 174 (466)
T 1o6v_A 118 TLFNNQITDI-D-PLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLSFG-NQVTDL-KPLA----------------- 174 (466)
T ss_dssp ECCSSCCCCC-G-GGTTCTTCSEEEEEEEEECC-C-GGGTTCTTCSEEEEE-ESCCCC-GGGT-----------------
T ss_pred ECCCCCCCCC-h-HHcCCCCCCEEECCCCccCC-C-hhhccCCcccEeecC-CcccCc-hhhc-----------------
Confidence 6666666543 2 25666666666666665542 2 234555555555553 211111 1122
Q ss_pred cCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCch
Q 041497 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLD 295 (568)
Q Consensus 216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 295 (568)
.+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ ++.+++|++|++++|.+....
T Consensus 175 --------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~----- 237 (466)
T 1o6v_A 175 --------NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----- 237 (466)
T ss_dssp --------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-----
T ss_pred --------cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-----
Confidence 555666666666655533 235556666666666666655444 455666666666666655432
Q ss_pred hhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCe
Q 041497 296 FITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQM 375 (568)
Q Consensus 296 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~ 375 (568)
.+..+++|+.|++++|.+.+..+ +... ++++.|++++|.+.+..+ +.. +++|+.
T Consensus 238 ---~l~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~--~~~------------------l~~L~~ 291 (466)
T 1o6v_A 238 ---TLASLTNLTDLDLANNQISNLAP--LSGL-TKLTELKLGANQISNISP--LAG------------------LTALTN 291 (466)
T ss_dssp ---GGGGCTTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCCCCGG--GTT------------------CTTCSE
T ss_pred ---hhhcCCCCCEEECCCCccccchh--hhcC-CCCCEEECCCCccCcccc--ccC------------------CCccCe
Confidence 24456666666666666655432 2222 225555555555443222 222 234555
Q ss_pred eECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCc
Q 041497 376 LFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNL 455 (568)
Q Consensus 376 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~ 455 (568)
|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++.+
T Consensus 292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~---------------------- 345 (466)
T 1o6v_A 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD---------------------- 345 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC----------------------
T ss_pred EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC----------------------
Confidence 5555555543222 4455555555555555554333 4445555555555444432
Q ss_pred ccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeeccccccc
Q 041497 456 LSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFT 504 (568)
Q Consensus 456 l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~ 504 (568)
. ..+..+++|+.|++++|++++..| ...+++|+.|++++|.++
T Consensus 346 ---~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 346 ---V--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ---C--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred ---c--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCccc
Confidence 2 234455555555555555554333 222555555555555555
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.7e-33 Score=286.02 Aligned_cols=312 Identities=19% Similarity=0.189 Sum_probs=260.8
Q ss_pred eeeceeCCC---------CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcC
Q 041497 24 WTGVTCGHR---------HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYF 94 (568)
Q Consensus 24 ~~~~~c~~~---------~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 94 (568)
|..+.|..+ ...++.|++++|.+.+..+..|.++++|++|++++|.+.+..|.+|.++++|++|++++|.+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 356777642 25688999999999988888899999999999999999887888999999999999999999
Q ss_pred CCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccc
Q 041497 95 SGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTR 174 (568)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 174 (568)
+...+..|.++++|++|++++|++....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 86666678899999999999999988888889999999999999999887777889999999999999999886555678
Q ss_pred cccccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCC
Q 041497 175 SHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQ 253 (568)
Q Consensus 175 ~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 253 (568)
..+++|+.|++++|.+....+ .+..+++|+.|++++|...+.++...+ ...+|+.|++++|.++...+..+..+++|+
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccC
Confidence 889999999999998887766 788889999999998887777777666 455899999999988866556778888999
Q ss_pred eEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceE
Q 041497 254 KLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTG 333 (568)
Q Consensus 254 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 333 (568)
.|++++|.+.+..+..+..+++|++|++++|.+....+. .+..+++|+.|++++|+++++.+..+..... ++.
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~ 324 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY------AFRGLNYLRVLNVSGNQLTTLEESVFHSVGN-LET 324 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT------TBTTCTTCCEEECCSSCCSCCCGGGBSCGGG-CCE
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHH------HhcCcccCCEEECCCCcCceeCHhHcCCCcc-cCE
Confidence 999999998888777888888999999999888876554 3667888889999888888876666665544 888
Q ss_pred EEcccCcccC
Q 041497 334 IAFGNNQISG 343 (568)
Q Consensus 334 L~l~~~~l~~ 343 (568)
|++++|.+..
T Consensus 325 L~l~~N~l~c 334 (477)
T 2id5_A 325 LILDSNPLAC 334 (477)
T ss_dssp EECCSSCEEC
T ss_pred EEccCCCccC
Confidence 8888887764
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-32 Score=281.43 Aligned_cols=345 Identities=25% Similarity=0.351 Sum_probs=269.2
Q ss_pred CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEe
Q 041497 33 HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFE 112 (568)
Q Consensus 33 ~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 112 (568)
..+++.|+++++.+.... .+..+++|++|++++|.+.+.. . +.++++|++|++++|.+++..+ +..+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 367999999999888643 4889999999999999998544 3 8999999999999999985444 99999999999
Q ss_pred ccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccccc
Q 041497 113 ASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG 192 (568)
Q Consensus 113 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (568)
+++|++... + .+..+++|++|++++|.+.+ . ..++.+++|++|++++ .+.. ...+..+++|+.|++++|.+.+
T Consensus 119 L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~-~~~~--~~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 119 LFNNQITDI-D-PLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCSSCCCCC-G-GGTTCTTCSEEEEEEEEECC-C-GGGTTCTTCSEEEEEE-SCCC--CGGGTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCC-h-HHcCCCCCCEEECCCCccCC-C-hhhccCCcccEeecCC-cccC--chhhccCCCCCEEECcCCcCCC
Confidence 999999854 3 38899999999999999985 3 4589999999999974 4432 2348899999999999999875
Q ss_pred CCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccC
Q 041497 193 MFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGG 272 (568)
Q Consensus 193 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~ 272 (568)
. +.+..+++|+.|++++|.+.+..+ ...+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..
T Consensus 192 ~-~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 192 I-SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp C-GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred C-hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 4 457888999999999998875444 33688999999999988754 457788999999999999886655 788
Q ss_pred CCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhh
Q 041497 273 LQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANL 352 (568)
Q Consensus 273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~ 352 (568)
+++|++|++++|.+....+ +..+++|+.|++++|++.+..+ +... ++++.|++++|.+.+..+ +..+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--~~~l 330 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--------LAGLTALTNLELNENQLEDISP--ISNL-KNLTYLTLYFNNISDISP--VSSL 330 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--------GTTCTTCSEEECCSSCCSCCGG--GGGC-TTCSEEECCSSCCSCCGG--GGGC
T ss_pred CCCCCEEECCCCccCcccc--------ccCCCccCeEEcCCCcccCchh--hcCC-CCCCEEECcCCcCCCchh--hccC
Confidence 8999999999998876542 5678899999999998887654 3444 348889999888877654 4444
Q ss_pred ccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCC
Q 041497 353 VNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPS 432 (568)
Q Consensus 353 ~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 432 (568)
++|++|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++.
T Consensus 331 ------------------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 331 ------------------TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ------------------TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ------------------ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 4556666666665543 345666666666666666665544 566666777776666655
Q ss_pred C
Q 041497 433 G 433 (568)
Q Consensus 433 ~ 433 (568)
+
T Consensus 389 ~ 389 (466)
T 1o6v_A 389 N 389 (466)
T ss_dssp C
T ss_pred C
Confidence 4
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.1e-32 Score=273.31 Aligned_cols=310 Identities=18% Similarity=0.162 Sum_probs=167.0
Q ss_pred CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497 34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 113 (568)
.+++.++++++.+...+...+..+++|++|++++|.+.+..+.++..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 44555666666655555444556666666666666665545555666666666666666666555555566666666666
Q ss_pred cCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccC
Q 041497 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGM 193 (568)
Q Consensus 114 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (568)
++|++....+..|.++++|++|++++|.+.+..+..++.+++|++|++++|.+... .+..+++|+.+++++|.+...
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence 66666533333345566666666666666555555566666666666666655422 244555666666665554422
Q ss_pred CCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCC
Q 041497 194 FPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGL 273 (568)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~ 273 (568)
...+.|+.|++++|.+.. ++.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+
T Consensus 202 ----~~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 202 ----AIPIAVEELDASHNSINV-VRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp ----ECCSSCSEEECCSSCCCE-EECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ----CCCCcceEEECCCCeeee-cccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 222355555555555542 2221 234555566655555532 344555556666666665555555555555
Q ss_pred CCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhc
Q 041497 274 QNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLV 353 (568)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~ 353 (568)
++|++|++++|.+...+.. +..+++|+.|++++|++..+ +..+...+ +++.|++++|.+++.. +.
T Consensus 272 ~~L~~L~L~~n~l~~~~~~-------~~~l~~L~~L~L~~n~l~~~-~~~~~~l~-~L~~L~L~~N~i~~~~---~~--- 336 (390)
T 3o6n_A 272 QRLERLYISNNRLVALNLY-------GQPIPTLKVLDLSHNHLLHV-ERNQPQFD-RLENLYLDHNSIVTLK---LS--- 336 (390)
T ss_dssp SSCCEEECCSSCCCEEECS-------SSCCTTCCEEECCSSCCCCC-GGGHHHHT-TCSEEECCSSCCCCCC---CC---
T ss_pred ccCCEEECCCCcCcccCcc-------cCCCCCCCEEECCCCcceec-CccccccC-cCCEEECCCCccceeC---ch---
Confidence 5555555555555543321 23445555555555555432 22222222 2555555555444321 11
Q ss_pred cccccCccccccchhhccCCCeeECccCccccc
Q 041497 354 NLNALGVEFNQLAVTILKSLQMLFLHENVLQGT 386 (568)
Q Consensus 354 ~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 386 (568)
.+++|++|++++|.+.+.
T Consensus 337 ---------------~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 337 ---------------THHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp ---------------TTCCCSEEECCSSCEEHH
T ss_pred ---------------hhccCCEEEcCCCCccch
Confidence 256777888888877654
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=9.2e-32 Score=269.91 Aligned_cols=310 Identities=18% Similarity=0.191 Sum_probs=156.6
Q ss_pred CCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEE
Q 041497 201 SSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLN 280 (568)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 280 (568)
++++.++++++.+. .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 44444555444443 34444444555566666665555555455555556666666666665555555555556666666
Q ss_pred CCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCc
Q 041497 281 LGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGV 360 (568)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l 360 (568)
+++|.+...+.. .+..+++|++|++++|.+.+..+..+..... ++.|++++|.+++.. +..+++|+.+++
T Consensus 124 L~~n~l~~l~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~---~~~l~~L~~L~l 193 (390)
T 3o6n_A 124 LERNDLSSLPRG------IFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHVD---LSLIPSLFHANV 193 (390)
T ss_dssp CCSSCCCCCCTT------TTTTCTTCCEEECCSSCCCBCCTTTTSSCTT-CCEEECCSSCCSBCC---GGGCTTCSEEEC
T ss_pred CCCCccCcCCHH------HhcCCCCCcEEECCCCccCccChhhccCCCC-CCEEECCCCcCCccc---cccccccceeec
Confidence 666655544432 2345555666666666555554444444433 555666555555431 233344444444
Q ss_pred cccccchh-hccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCch
Q 041497 361 EFNQLAVT-ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQL 439 (568)
Q Consensus 361 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 439 (568)
+.|.+... ..++|++|++++|.+..... ...++|+.|++++|.+++. ..+..+++|++|++++|.
T Consensus 194 ~~n~l~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~--------- 259 (390)
T 3o6n_A 194 SYNLLSTLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE--------- 259 (390)
T ss_dssp CSSCCSEEECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC---------
T ss_pred ccccccccCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCc---------
Confidence 44444321 24456666666666553321 1134555555555555432 344455555555544444
Q ss_pred hHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCC
Q 041497 440 PRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSIT 518 (568)
Q Consensus 440 ~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 518 (568)
+++..+..+..+++|++|++++|++++ ++..+. +++|+.|++++|+++ .+|..+..+++|+
T Consensus 260 ----------------l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 260 ----------------LEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321 (390)
T ss_dssp ----------------CCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred ----------------CCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence 444444455555555555555555542 222222 555555555555555 3334444555555
Q ss_pred EEeCCCCccccCcCccccccccCCeeecccCcccccCC
Q 041497 519 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSL 556 (568)
Q Consensus 519 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 556 (568)
.|++++|.++... +..+++|+.|++++|++.|.+.
T Consensus 322 ~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 322 NLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp EEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred EEECCCCccceeC---chhhccCCEEEcCCCCccchhH
Confidence 5555555554331 3444555555555555555443
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=5.2e-31 Score=278.77 Aligned_cols=334 Identities=17% Similarity=0.141 Sum_probs=194.3
Q ss_pred CCCCCCCCCCCCce----eeeceeCC----------------CCCeEEEEeccCCccccccCCcccCCCCCceeeccCCc
Q 041497 10 GVTSSWNNSINLCQ----WTGVTCGH----------------RHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNS 69 (568)
Q Consensus 10 ~~~~~~~~~~~~c~----~~~~~c~~----------------~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~ 69 (568)
..++.|..+.+||. |.++.|.. ....++.++++++.+...++..+..+++|++|++++|.
T Consensus 7 ~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~ 86 (597)
T 3oja_B 7 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86 (597)
T ss_dssp ----CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC
T ss_pred ccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC
Confidence 35678877767764 43333321 11345566666666666555556666777777777776
Q ss_pred ccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcc
Q 041497 70 FRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPAS 149 (568)
Q Consensus 70 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 149 (568)
+.+..|.+|+.+++|++|++++|.+++..|..|+++++|++|++++|.+....+..|.++++|++|++++|.+.+..+..
T Consensus 87 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 166 (597)
T 3oja_B 87 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166 (597)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh
Confidence 66555556667777777777777666666666666777777777777666444444566677777777777666666666
Q ss_pred cCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcc
Q 041497 150 IGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLR 229 (568)
Q Consensus 150 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 229 (568)
++.+++|++|++++|.+.+. .+..+++|+.|++++|.+.+. ...+.|+.|++++|.+.. ++.. ..++|+
T Consensus 167 ~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~~-~~~~---~~~~L~ 235 (597)
T 3oja_B 167 FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINV-VRGP---VNVELT 235 (597)
T ss_dssp TTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCCE-EECS---CCSCCC
T ss_pred hhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc----cCCchhheeeccCCcccc-cccc---cCCCCC
Confidence 66667777777776666532 245566666666666655432 233456666666665542 2222 124566
Q ss_pred eEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEE
Q 041497 230 FFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVL 309 (568)
Q Consensus 230 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 309 (568)
.|++++|.+++. .++..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+...+.. +..+++|+.|
T Consensus 236 ~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-------~~~l~~L~~L 306 (597)
T 3oja_B 236 ILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-------GQPIPTLKVL 306 (597)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS-------SSCCTTCCEE
T ss_pred EEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc-------cccCCCCcEE
Confidence 666666666542 4455666666666666666655565666666666666666666554321 3345566666
Q ss_pred EeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccc
Q 041497 310 VLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGT 386 (568)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 386 (568)
++++|.+..+ +..+..++ +++.|++++|.+.+.. +. .+++|+.|++++|.+.+.
T Consensus 307 ~Ls~N~l~~i-~~~~~~l~-~L~~L~L~~N~l~~~~---~~------------------~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 307 DLSHNHLLHV-ERNQPQFD-RLENLYLDHNSIVTLK---LS------------------THHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ECCSSCCCCC-GGGHHHHT-TCSEEECCSSCCCCCC---CC------------------TTCCCSEEECCSSCEEHH
T ss_pred ECCCCCCCcc-CcccccCC-CCCEEECCCCCCCCcC---hh------------------hcCCCCEEEeeCCCCCCh
Confidence 6666655542 22233332 2555555555554331 11 156777888888877654
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=8.4e-31 Score=258.75 Aligned_cols=308 Identities=26% Similarity=0.322 Sum_probs=217.1
Q ss_pred CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCC
Q 041497 196 PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275 (568)
Q Consensus 196 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 275 (568)
.+..+++|+.|+++++.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.. .+..+++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTT
T ss_pred cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCc
Confidence 3445667777777777665 2332 2356777777777777765433 667777777777777776432 3667777
Q ss_pred CcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccc
Q 041497 276 LSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNL 355 (568)
Q Consensus 276 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L 355 (568)
|++|++++|.+..... +..+++|+.|++++|......+. +.... +++.|++++|.+.+..+ +..
T Consensus 112 L~~L~l~~n~i~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~-~~~l~-~L~~L~l~~~~~~~~~~--~~~---- 175 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--------LANLTKMYSLNLGANHNLSDLSP-LSNMT-GLNYLTVTESKVKDVTP--IAN---- 175 (347)
T ss_dssp CSEEECTTSCCCCCGG--------GTTCTTCCEEECTTCTTCCCCGG-GTTCT-TCCEEECCSSCCCCCGG--GGG----
T ss_pred CCEEECcCCcccCchh--------hccCCceeEEECCCCCCcccccc-hhhCC-CCcEEEecCCCcCCchh--hcc----
Confidence 7777777777665432 55667777777777754433222 33332 36666666666554332 333
Q ss_pred cccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCC
Q 041497 356 NALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTM 435 (568)
Q Consensus 356 ~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 435 (568)
+++|++|++++|.+.+..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|.+.+..
T Consensus 176 --------------l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 176 --------------LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp --------------CTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred --------------CCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc
Confidence 5667777777777764332 6777888888888887765443 677788888888888776544
Q ss_pred CCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecccccccccCCccCcCCC
Q 041497 436 PRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLK 515 (568)
Q Consensus 436 ~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 515 (568)
+ +..+..+ +.|++++|.+++. ..+..+++|++|++++|.+++ ++....+++|+.|++++|.+++..+..+..++
T Consensus 238 ~--~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 238 P--LANLSQL-TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311 (347)
T ss_dssp G--GTTCTTC-CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred c--hhcCCCC-CEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence 3 5555555 8888888888753 468899999999999999984 44433499999999999999988888999999
Q ss_pred CCCEEeCCCCccccCcCccccccccCCeeecccCccc
Q 041497 516 SITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 552 (568)
Q Consensus 516 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 552 (568)
+|+.|++++|++++..| +..+++|+.|++++|+|+
T Consensus 312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999999999997766 889999999999999986
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.7e-30 Score=254.10 Aligned_cols=304 Identities=23% Similarity=0.359 Sum_probs=222.9
Q ss_pred CCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEE
Q 041497 32 RHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKF 111 (568)
Q Consensus 32 ~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 111 (568)
..+.+++|+++++.+.... .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++. + ..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccch--hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEE
Confidence 3467888888888887643 47888888999998888874 333 8888888999998888873 3 358888888899
Q ss_pred eccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccc
Q 041497 112 EASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFS 191 (568)
Q Consensus 112 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (568)
++++|++... +. +..+++|++|++++|...... ..+..+++|++|++++|.+.... .+..+++|+.|++++|.+.
T Consensus 116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCch--hhccCCCCCEEEccCCccc
Confidence 8888888743 33 778888888888888655433 44888888888888888876332 2778888888888888877
Q ss_pred cCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCcc
Q 041497 192 GMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFG 271 (568)
Q Consensus 192 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~ 271 (568)
+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+.
T Consensus 191 ~~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~ 262 (347)
T 4fmz_A 191 DISP-LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVK 262 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred cccc-ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHh
Confidence 5443 6777888888888887764332 3367788888888888775433 67778888888888887754 3467
Q ss_pred CCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhh
Q 041497 272 GLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351 (568)
Q Consensus 272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~ 351 (568)
.+++|++|++++|.+.... .+..+++|+.|++++|.+.+..+..+...+. ++.|++++|.+++..| +..
T Consensus 263 ~l~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDIS--------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN-LTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp TCTTCCEEECCSSCCCCCG--------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTT-CSEEECCSSSCCCCGG--GGG
T ss_pred cCCCcCEEEccCCccCCCh--------hhcCCCCCCEEECcCCcCCCcChhHhhcccc-CCEEEccCCccccccC--hhh
Confidence 7788888888888776642 2567788888888888887776666666644 8888888888776555 666
Q ss_pred hccccccCcccccc
Q 041497 352 LVNLNALGVEFNQL 365 (568)
Q Consensus 352 ~~~L~~l~l~~~~~ 365 (568)
+++|+.+++++|.+
T Consensus 332 l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 332 LSKMDSADFANQVI 345 (347)
T ss_dssp CTTCSEESSSCC--
T ss_pred hhccceeehhhhcc
Confidence 66666666655554
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.5e-31 Score=280.06 Aligned_cols=313 Identities=18% Similarity=0.190 Sum_probs=204.4
Q ss_pred CCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEE
Q 041497 200 ISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWL 279 (568)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 279 (568)
+++++.++++++.+. .+|..++..+++|+.|++++|.+.+..+..|..+++|+.|+|++|.+.+..+..|+.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467788888877765 5666666677888888888888887777778888888888888888887777777888888888
Q ss_pred ECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccC
Q 041497 280 NLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALG 359 (568)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~ 359 (568)
++++|.+...+.. .+..+++|+.|++++|.+.+..+..+..+.. ++.|++++|.+++.. +..+++|+.++
T Consensus 129 ~L~~n~l~~l~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~---~~~l~~L~~L~ 198 (597)
T 3oja_B 129 VLERNDLSSLPRG------IFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHVD---LSLIPSLFHAN 198 (597)
T ss_dssp ECCSSCCCCCCTT------TTTTCTTCCEEECCSSCCCBCCTTTTTTCTT-CCEEECTTSCCSBCC---GGGCTTCSEEE
T ss_pred EeeCCCCCCCCHH------HhccCCCCCEEEeeCCcCCCCChhhhhcCCc-CcEEECcCCCCCCcC---hhhhhhhhhhh
Confidence 8888887766553 2567788888888888887776666666544 777888877776542 33344444455
Q ss_pred ccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCch
Q 041497 360 VEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQL 439 (568)
Q Consensus 360 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 439 (568)
++.|.+... ...+.|+.|++++|.++...+.. .++|+.|++++|.+.+. ..+
T Consensus 199 l~~n~l~~l-----------------------~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l 250 (597)
T 3oja_B 199 VSYNLLSTL-----------------------AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWL 250 (597)
T ss_dssp CCSSCCSEE-----------------------ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGG
T ss_pred cccCccccc-----------------------cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhh
Confidence 554444322 12234445555554443322111 13455555555555432 334
Q ss_pred hHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCC
Q 041497 440 PRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSIT 518 (568)
Q Consensus 440 ~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 518 (568)
..+..+ +.|++++|.+++..|..+..+++|+.|++++|.+++ +|..+. +++|+.|+|++|.++ .+|..+..+++|+
T Consensus 251 ~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~ 327 (597)
T 3oja_B 251 LNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327 (597)
T ss_dssp GGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred ccCCCC-CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCC
Confidence 444444 666666666666666677777777777777777764 344443 677777777777776 4555666677777
Q ss_pred EEeCCCCccccCcCccccccccCCeeecccCcccccCCC
Q 041497 519 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLF 557 (568)
Q Consensus 519 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 557 (568)
.|++++|.++... +..+++|+.|++++|++.|.++.
T Consensus 328 ~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 328 NLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp EEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred EEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH
Confidence 7777777776542 45667777777777777766543
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.2e-29 Score=244.00 Aligned_cols=288 Identities=22% Similarity=0.282 Sum_probs=177.9
Q ss_pred CCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecc
Q 041497 59 FLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIA 138 (568)
Q Consensus 59 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 138 (568)
++++++++++.+. .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|+++...|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3444444444443 333333 1345555555555544444445555555555555555554444455555555555555
Q ss_pred cccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccccc--CCC-CCCCCCCccEEEeecccccc
Q 041497 139 ENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG--MFP-PINNISSLEYIFIHRNIYHG 215 (568)
Q Consensus 139 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~-~l~~~~~L~~L~l~~~~~~~ 215 (568)
+|.+. .+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+ .+..+ +|+.|++++|.+.
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~- 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT- 185 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence 55544 2333322 455555555555553333345555555555555555532 222 34444 6666666666655
Q ss_pred cCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCch
Q 041497 216 SLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLD 295 (568)
Q Consensus 216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 295 (568)
.+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+..++.
T Consensus 186 ~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~---- 258 (332)
T 2ft3_A 186 GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA---- 258 (332)
T ss_dssp SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT----
T ss_pred ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh----
Confidence 3444432 678888888888887777788888888999999888887777778888889999998888876544
Q ss_pred hhhcccCCCcccEEEeccCcccCcCchhhhcc-----cccceEEEcccCccc--CCCChhhhhhccccccCccccc
Q 041497 296 FITLLTNCTKLEVLVLDSNRFGAVLPFSLANL-----STTMTGIAFGNNQIS--GFIPDGIANLVNLNALGVEFNQ 364 (568)
Q Consensus 296 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~l~~L~l~~~~l~--~~~~~~~~~~~~L~~l~l~~~~ 364 (568)
.+..+++|+.|++++|+++++.+..+... ...++.+++++|.+. +..+..+..+++|+.+++++|+
T Consensus 259 ---~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 ---GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ---TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ---hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 26678889999999988888766665543 345888999999876 5677788888877777777654
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8.1e-29 Score=242.50 Aligned_cols=289 Identities=19% Similarity=0.205 Sum_probs=181.1
Q ss_pred EEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccC
Q 041497 36 VIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 115 (568)
Q Consensus 36 i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 115 (568)
++.++++++.+...+. .+ .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++
T Consensus 33 l~~l~~~~~~l~~lp~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPK-DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCCSCCC-SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCccccCc-cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 3445555555554322 12 25677777777777655555677777777777777777766666777777777777777
Q ss_pred CcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCC--CCCccccccccCcEEeecccccccC
Q 041497 116 NKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGG--RIPSTRSHVRNLISFNVGLNQFSGM 193 (568)
Q Consensus 116 n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (568)
|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+..
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 7766 3444332 567777777776665555556666777777777666642 344555556666666665555443
Q ss_pred CCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCC
Q 041497 194 FPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGL 273 (568)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~ 273 (568)
++..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+
T Consensus 186 -----------------------l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 186 -----------------------IPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp -----------------------CCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred -----------------------CCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 33322 2567777777777766666667777777777777777766666666677
Q ss_pred CCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcc-----cccceEEEcccCcccC--CCC
Q 041497 274 QNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANL-----STTMTGIAFGNNQISG--FIP 346 (568)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~l~~L~l~~~~l~~--~~~ 346 (568)
++|++|++++|.+...+. .+..+++|+.|++++|+++++.+..+... ...++.+++++|.+.. ..|
T Consensus 240 ~~L~~L~L~~N~l~~lp~-------~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~ 312 (330)
T 1xku_A 240 PHLRELHLNNNKLVKVPG-------GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312 (330)
T ss_dssp TTCCEEECCSSCCSSCCT-------TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred CCCCEEECCCCcCccCCh-------hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc
Confidence 777777777777665433 25566777777777777776655554322 2346778888887643 556
Q ss_pred hhhhhhccccccCccccc
Q 041497 347 DGIANLVNLNALGVEFNQ 364 (568)
Q Consensus 347 ~~~~~~~~L~~l~l~~~~ 364 (568)
..|..+..++.+++++|+
T Consensus 313 ~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 313 STFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGGTTCCCGGGEEC----
T ss_pred cccccccceeEEEecccC
Confidence 777777777777777653
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.6e-28 Score=239.08 Aligned_cols=287 Identities=19% Similarity=0.210 Sum_probs=165.4
Q ss_pred CccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEEC
Q 041497 202 SLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNL 281 (568)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 281 (568)
+++.++++++.+. .+|..+ .+.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3555555555443 344332 134555555555555444445555555555555555555444444555555555555
Q ss_pred CCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCcc
Q 041497 282 GKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVE 361 (568)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~ 361 (568)
++|.+...+.. + .++ +++|++++|.+.+..+..+..+++
T Consensus 110 ~~n~l~~l~~~-------~--~~~-------------------------L~~L~l~~n~i~~~~~~~~~~l~~------- 148 (332)
T 2ft3_A 110 SKNHLVEIPPN-------L--PSS-------------------------LVELRIHDNRIRKVPKGVFSGLRN------- 148 (332)
T ss_dssp CSSCCCSCCSS-------C--CTT-------------------------CCEEECCSSCCCCCCSGGGSSCSS-------
T ss_pred CCCcCCccCcc-------c--ccc-------------------------CCEEECCCCccCccCHhHhCCCcc-------
Confidence 55554433321 0 134 555555555555444444444333
Q ss_pred ccccchhhccCCCeeECccCcccc--ccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCch
Q 041497 362 FNQLAVTILKSLQMLFLHENVLQG--TIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQL 439 (568)
Q Consensus 362 ~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 439 (568)
|++|++++|.++. ..+..+..+ +|+.|++++|++++ .|..+. ++|++|++++|.+.+..+..+
T Consensus 149 -----------L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 149 -----------MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDL 213 (332)
T ss_dssp -----------CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSS
T ss_pred -----------CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHh
Confidence 3333333333321 223333333 45555555555443 222221 445555555555554444444
Q ss_pred hHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcC-----
Q 041497 440 PRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSS----- 513 (568)
Q Consensus 440 ~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~----- 513 (568)
..+..+ +.|++++|.+++..+..+..+++|++|++++|+++ .+|..+. +++|+.|++++|+++...+..|..
T Consensus 214 ~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 214 LRYSKL-YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291 (332)
T ss_dssp TTCTTC-SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred cCCCCC-CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence 444444 66667777777666667888899999999999888 6777666 889999999999998777666654
Q ss_pred -CCCCCEEeCCCCccc--cCcCccccccccCCeeecccCc
Q 041497 514 -LKSITELDLSRNNLS--GHIPQYLENLSFLSFLNLSYNH 550 (568)
Q Consensus 514 -l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~ 550 (568)
.+.|+.|++++|++. ...|..|..+++|+.+++++|+
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 367899999999987 6777889999999999999885
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=4.1e-33 Score=286.63 Aligned_cols=315 Identities=18% Similarity=0.158 Sum_probs=192.2
Q ss_pred CcceEeecCCcccc----ccCccCCCCCCCCeEecCCCcccccccCCc-----cCCCCCcEEECCCCCCCCcCCCCchhh
Q 041497 227 NLRFFIISGNNLTG----SLQDSLSNATNLQKLDINRNLFSGKVSINF-----GGLQNLSWLNLGKNNLGTRTANDLDFI 297 (568)
Q Consensus 227 ~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~ 297 (568)
+|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+...... .+.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--~l~ 163 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE--PLA 163 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--HHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--HHH
Confidence 68888888887774 336677788888888888888765433322 2356788888888877654322 234
Q ss_pred hcccCCCcccEEEeccCcccCcCchhhhc----ccccceEEEcccCcccCC----CChhhhhhccccccCccccccchhh
Q 041497 298 TLLTNCTKLEVLVLDSNRFGAVLPFSLAN----LSTTMTGIAFGNNQISGF----IPDGIANLVNLNALGVEFNQLAVTI 369 (568)
Q Consensus 298 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~l~~L~l~~~~l~~~----~~~~~~~~~~L~~l~l~~~~~~~~~ 369 (568)
..+..+++|++|++++|.+.+.....+.. ...+++.|++++|.+++. ++..+..+++|+.|+++.|.+....
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 45667788999999888876654444332 123588888888887764 3455555555555555555443221
Q ss_pred ccCCCeeECccCccccccCccccCcccccccccccccccCC----CCCCccCCCCceEEEcccCCCCCCCCCchhHHh--
Q 041497 370 LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGN----IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRII-- 443 (568)
Q Consensus 370 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-- 443 (568)
... ..+..+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+.+..+..+....
T Consensus 244 ~~~-------------l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 310 (461)
T 1z7x_W 244 MAE-------------LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE 310 (461)
T ss_dssp HHH-------------HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred HHH-------------HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhcc
Confidence 000 0011112344555555555544432 233344455555555555554433222233221
Q ss_pred --hhceEEEccCCccccc----CchhhhcCCCCcEEecCCCcccccCCCccc------ccccceeecccccccc----cC
Q 041497 444 --TLSVLLNLSDNLLSGH----FPAEVGKLKNLVSLDISSNMFSGEIPTTLG------CTSLEYLCMQDNSFTG----SI 507 (568)
Q Consensus 444 --~l~~~l~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~------~~~L~~L~Ls~n~l~~----~~ 507 (568)
..++.|++++|.+++. .+..+..+++|++|++++|.+++..+..+. .++|+.|++++|.+++ .+
T Consensus 311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 390 (461)
T 1z7x_W 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL 390 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHH
Confidence 1226667777766644 345566778888999988888755444332 4688899999988875 56
Q ss_pred CccCcCCCCCCEEeCCCCccccCcCcccc-----ccccCCeeecccCcccccCC
Q 041497 508 PSTLSSLKSITELDLSRNNLSGHIPQYLE-----NLSFLSFLNLSYNHFESKSL 556 (568)
Q Consensus 508 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~i~~~~~ 556 (568)
+..+..+++|+.|++++|++++.....+. ....|+.|.+.++.+....+
T Consensus 391 ~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~ 444 (461)
T 1z7x_W 391 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 444 (461)
T ss_dssp HHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred HHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence 67777788899999999988754332222 23468888887777665444
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.4e-28 Score=237.27 Aligned_cols=243 Identities=19% Similarity=0.267 Sum_probs=185.4
Q ss_pred CCceeeeceeCCC---------CCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCC
Q 041497 20 NLCQWTGVTCGHR---------HQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLT 90 (568)
Q Consensus 20 ~~c~~~~~~c~~~---------~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~ 90 (568)
..|.+..+.|... .+.++.|++++|.+.+..+..|.++++|++|++++|.+.+..|.+++++++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4678888888742 2578999999999999888889999999999999999998889999999999999999
Q ss_pred CCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCC--CCCcccCCCCCCCeEEeccCCCCC
Q 041497 91 NNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRG--QLPASIGNLSALQEINVNGNRLGG 168 (568)
Q Consensus 91 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~ 168 (568)
+|.++ .+|..+. ++|++|++++|++....+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 99998 5665554 899999999999998888889999999999999999863 56778899999999999999987
Q ss_pred CCCccccccccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCC
Q 041497 169 RIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLS 247 (568)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 247 (568)
.+|..+. ++|+.|++++|.+.+..+ .+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+. ..|..+.
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT-GGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh-ccCCCCCCEEECCCCcCc-cCChhhc
Confidence 4555443 788888888888776544 5566666666666666555322222 225556666666666555 3444455
Q ss_pred CCCCCCeEecCCCcccccccCCc
Q 041497 248 NATNLQKLDINRNLFSGKVSINF 270 (568)
Q Consensus 248 ~~~~L~~L~L~~n~~~~~~~~~~ 270 (568)
.+++|++|++++|.+++..+..|
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSS
T ss_pred cCCCcCEEECCCCcCCccChhhc
Confidence 55566666666666555444444
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=6.6e-30 Score=249.05 Aligned_cols=267 Identities=17% Similarity=0.240 Sum_probs=159.7
Q ss_pred cccC-CCCCCCCCCC----CCCCCCceeeeceeCC--------CCCeEEEEeccCCccccccCCcccCCCCCceeeccCC
Q 041497 2 KSQL-QDPLGVTSSW----NNSINLCQWTGVTCGH--------RHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANN 68 (568)
Q Consensus 2 ~~~~-~~~~~~~~~~----~~~~~~c~~~~~~c~~--------~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~ 68 (568)
|.++ .||.+.++.| +...++|.|.|+.|.. ...+++.|+++++.+.. ++..+.++++|++|++++|
T Consensus 36 k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n 114 (328)
T 4fcg_A 36 QRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAA 114 (328)
T ss_dssp HHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESS
T ss_pred HHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchh-cChhhhhCCCCCEEECCCC
Confidence 4445 3676777788 4567899999998842 23556666666666663 3444555666666666666
Q ss_pred cccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCc
Q 041497 69 SFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPA 148 (568)
Q Consensus 69 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 148 (568)
.+. .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|...+.+|..+... ....
T Consensus 115 ~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~---------------~~~~ 177 (328)
T 4fcg_A 115 GLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST---------------DASG 177 (328)
T ss_dssp CCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE---------------C-CC
T ss_pred Ccc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc---------------cchh
Confidence 665 55666666666666666666666 556566666666666666655555555444320 0001
Q ss_pred ccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCc
Q 041497 149 SIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNL 228 (568)
Q Consensus 149 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 228 (568)
.+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+.+..+++|+.|++++|.+.+.+|..+. .+++|
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-~l~~L 255 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPL 255 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTT-CCCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhc-CCCCC
Confidence 1122455555555555544 444445555555555555555554333455555555555555555555554443 66677
Q ss_pred ceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCC
Q 041497 229 RFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGT 288 (568)
Q Consensus 229 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 288 (568)
++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++++.+++..+.+..
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 777777776666666667777777777777777777777777777777777777654443
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.3e-31 Score=275.39 Aligned_cols=351 Identities=17% Similarity=0.100 Sum_probs=242.3
Q ss_pred CCccEEEeecccccccCCCcccCCCCCcceEeecCCccccc----cCccCCCCCCCCeEecCCCcccccccCCc-cCCC-
Q 041497 201 SSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGS----LQDSLSNATNLQKLDINRNLFSGKVSINF-GGLQ- 274 (568)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~n~~~~~~~~~~-~~~~- 274 (568)
++|+.|+++++.+.+.....++..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 34555555555544322233233566777777777766532 23445566777777777777654333222 2233
Q ss_pred ---CCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcc----cccceEEEcccCcccCCC--
Q 041497 275 ---NLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANL----STTMTGIAFGNNQISGFI-- 345 (568)
Q Consensus 275 ---~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~l~~L~l~~~~l~~~~-- 345 (568)
+|++|++++|.+...... .+...+..+++|++|++++|.+.+.....+... ..++++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~--~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCG--VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHH--HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred CCCceeEEEccCCCCCHHHHH--HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 577777777776543211 233456677777778877777665443333221 234788888888777643
Q ss_pred --ChhhhhhccccccCccccccchhh-----------ccCCCeeECccCccccc----cCccccCccccccccccccccc
Q 041497 346 --PDGIANLVNLNALGVEFNQLAVTI-----------LKSLQMLFLHENVLQGT----IPSFLGNLTMLTQRLLEVNDLL 408 (568)
Q Consensus 346 --~~~~~~~~~L~~l~l~~~~~~~~~-----------~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 408 (568)
+..+..+++|+.|++++|.+.... .++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 455666788888888888775432 34899999999998864 4556778899999999999886
Q ss_pred CCC-----CCCccCCCCceEEEcccCCCCCC----CCCchhHHhhhceEEEccCCcccccCchhhhc-----CCCCcEEe
Q 041497 409 GNI-----PPSIGNCKNLILLTTRKNKPSGT----MPRQLPRIITLSVLLNLSDNLLSGHFPAEVGK-----LKNLVSLD 474 (568)
Q Consensus 409 ~~~-----~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~-----l~~L~~L~ 474 (568)
+.. +..+..+++|++|++++|.+.+. ++..+..+..+ +.|++++|.+++..+..+.. .++|++|+
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL-KELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC-CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc-ceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 543 22233589999999999988764 33344445566 99999999998655544543 37999999
Q ss_pred cCCCccccc----CCCccc-ccccceeecccccccccCCccCcC-----CCCCCEEeCCCCcccc----CcCcccccccc
Q 041497 475 ISSNMFSGE----IPTTLG-CTSLEYLCMQDNSFTGSIPSTLSS-----LKSITELDLSRNNLSG----HIPQYLENLSF 540 (568)
Q Consensus 475 ls~n~l~~~----~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~~~~l~~ 540 (568)
+++|.+++. ++..+. +++|+.|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 999998865 333444 799999999999998765544432 6799999999999986 67888899999
Q ss_pred CCeeecccCccccc
Q 041497 541 LSFLNLSYNHFESK 554 (568)
Q Consensus 541 L~~L~l~~n~i~~~ 554 (568)
|++|++++|+|++.
T Consensus 400 L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 400 LRELDLSNNCLGDA 413 (461)
T ss_dssp CCEEECCSSSCCHH
T ss_pred ccEEECCCCCCCHH
Confidence 99999999999875
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=4.3e-29 Score=241.92 Aligned_cols=248 Identities=25% Similarity=0.398 Sum_probs=183.7
Q ss_pred CCCceeeccCCcccc--cCCcccCCCCCCcEEeCCC-CcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCce
Q 041497 58 SFLRSINLANNSFRA--EIPHEVGNLFRLQNLTLTN-NYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQL 134 (568)
Q Consensus 58 ~~L~~L~ls~~~~~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 134 (568)
.++++|+++++.+.+ .+|..+.++++|++|++++ |.+++..|..|..+++|++|++++|++.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 478999999999988 7899999999999999995 8888889999999999999999999998889999999999999
Q ss_pred eecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccc-cCcEEeecccccccCCC-CCCCCCCccEEEeeccc
Q 041497 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVR-NLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNI 212 (568)
Q Consensus 135 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~ 212 (568)
|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++ .|+.|++++|.+.+..+ .+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999988899999999999999999999878888888887 88888888888875554 455554 6666666666
Q ss_pred ccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCC
Q 041497 213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTAN 292 (568)
Q Consensus 213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 292 (568)
+.+..+..+. .+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+.
T Consensus 209 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 209 LEGDASVLFG-SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEECCGGGCC-TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccCcCCHHHh-cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 6544333332 556666666666665544333 45555666666666666555555555555555555555555433222
Q ss_pred CchhhhcccCCCcccEEEeccCc
Q 041497 293 DLDFITLLTNCTKLEVLVLDSNR 315 (568)
Q Consensus 293 ~~~~~~~l~~~~~L~~L~l~~~~ 315 (568)
...+++|+.+++++|+
T Consensus 287 -------~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 287 -------GGNLQRFDVSAYANNK 302 (313)
T ss_dssp -------STTGGGSCGGGTCSSS
T ss_pred -------CccccccChHHhcCCC
Confidence 2334445555554443
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=7e-28 Score=234.74 Aligned_cols=290 Identities=15% Similarity=0.209 Sum_probs=213.6
Q ss_pred cccCCCCCCCCCCCCCC--CCCceeeeceeCCC--CCeEEEEeccCCccccccCCcc--cCCCCCceeeccCCcccccCC
Q 041497 2 KSQLQDPLGVTSSWNNS--INLCQWTGVTCGHR--HQRVIGLDLRHQSIGGFLSPFV--GNLSFLRSINLANNSFRAEIP 75 (568)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~c~~~~~~c~~~--~~~i~~L~l~~~~i~~~~~~~~--~~~~~L~~L~ls~~~~~~~~~ 75 (568)
|.++.|+.+++..|+.+ .++|.|.+.-|... ...+- ...+..... .+..+ ...+++++|++++|.+. .+|
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~--~~~g~~~~~-~~~~l~~~~~~~l~~L~L~~n~l~-~lp 97 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE--TRTGRALKA-TADLLEDATQPGRVALELRSVPLP-QFP 97 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC--CSHHHHHHH-HHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhccccccccccc--ccCCcchhh-hHHHHhcccccceeEEEccCCCch-hcC
Confidence 34566777788888763 47888765444110 00000 011111110 01111 23467888888888877 677
Q ss_pred cccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCC
Q 041497 76 HEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSA 155 (568)
Q Consensus 76 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~ 155 (568)
..+.++++|++|++++|.++ .+|..+..+++|++|++++|++. .+|..+..+++|++|++++|...+.+|..+..
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~--- 172 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS--- 172 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE---
T ss_pred hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh---
Confidence 77777888888888888887 67777788888888888888777 66777777777888877777766665554432
Q ss_pred CCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecC
Q 041497 156 LQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISG 235 (568)
Q Consensus 156 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 235 (568)
. ..+..+..+++|+.|++++|.+......+..+++|+.|++++|.+. .++..+. .+++|++|++++
T Consensus 173 ---~---------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~-~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 173 ---T---------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEELDLRG 238 (328)
T ss_dssp ---E---------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGG-GCTTCCEEECTT
T ss_pred ---c---------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhc-cCCCCCEEECcC
Confidence 0 1223466799999999999999855448899999999999999998 4665544 899999999999
Q ss_pred CccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCc
Q 041497 236 NNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNR 315 (568)
Q Consensus 236 ~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 315 (568)
|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|++|++++|++....+. .+..+++++.+++..+.
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~------~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS------LIAQLPANCIILVPPHL 312 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG------GGGGSCTTCEEECCGGG
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH------HHhhccCceEEeCCHHH
Confidence 999989999999999999999999999888898899999999999999998775553 57899999999999876
Q ss_pred ccCcC
Q 041497 316 FGAVL 320 (568)
Q Consensus 316 ~~~~~ 320 (568)
+....
T Consensus 313 ~~~l~ 317 (328)
T 4fcg_A 313 QAQLD 317 (328)
T ss_dssp SCC--
T ss_pred HHHHh
Confidence 65543
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.8e-27 Score=232.83 Aligned_cols=285 Identities=17% Similarity=0.191 Sum_probs=202.2
Q ss_pred CCCCCCCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCc
Q 041497 14 SWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNY 93 (568)
Q Consensus 14 ~~~~~~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~ 93 (568)
.|..+...|.|.++ | +.+++.+...+. .+. ++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 22 ~~~~~~~~C~~~~~-c----------~~~~~~l~~iP~-~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 22 SSNQASLSCDRNGI-C----------KGSSGSLNSIPS-GLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -----CCEECTTSE-E----------ECCSTTCSSCCT-TCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCccCCCCCCCeE-e----------eCCCCCcccccc-ccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 44555566766543 3 556666666443 222 589999999999887666688999999999999999
Q ss_pred CCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCC-cccCCCCCCCeEEeccCC-CCCCCC
Q 041497 94 FSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLP-ASIGNLSALQEINVNGNR-LGGRIP 171 (568)
Q Consensus 94 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~ 171 (568)
+++..+..|.++++|++|++++|+++...+..+.++++|++|++++|.+.+... ..+..+++|++|++++|. +....+
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence 987777889999999999999999986555568889999999999998885433 478889999999999984 554556
Q ss_pred ccccccccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCC---
Q 041497 172 STRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLS--- 247 (568)
Q Consensus 172 ~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--- 247 (568)
..+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+. .++..++..+++|+.|++++|.+.+..+..+.
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccccc
Confidence 678888899999999888887755 7788888888888888764 45554444577888888888887765443332
Q ss_pred CCCCCCeEecCCCccccc----ccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCc
Q 041497 248 NATNLQKLDINRNLFSGK----VSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAV 319 (568)
Q Consensus 248 ~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 319 (568)
..+.++.++++++.+.+. .+..+..+++|++|++++|.+..++.. .+..+++|+.|++++|++...
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~------~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG------IFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECCSSCBCCC
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHH------HHhcCCCCCEEEeeCCCccCc
Confidence 345567777777666542 233455666777777777766654432 234566666666666666543
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.3e-29 Score=268.94 Aligned_cols=455 Identities=15% Similarity=0.058 Sum_probs=214.5
Q ss_pred CCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCccc---ccCCcccC------------CCCC
Q 041497 19 INLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFR---AEIPHEVG------------NLFR 83 (568)
Q Consensus 19 ~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~---~~~~~~~~------------~l~~ 83 (568)
..|+.|+++.+.. -+.+.+..+ ....+...+.++++|++|+++++... +.+|..+. .+++
T Consensus 39 ~vck~W~~~~~~~----~~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 113 (592)
T 3ogk_B 39 LVCRRWFKIDSET----REHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113 (592)
T ss_dssp TSCHHHHHHHHHH----CCEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred HHhHHHHHhhhcc----ccEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCC
Confidence 4455798775431 122333322 22233445678888999999875421 11222221 4455
Q ss_pred CcEEeCCCCcCCCCCCccccc-CCC-CcEEeccCCcc-cc-cCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeE
Q 041497 84 LQNLTLTNNYFSGKIPTNLSR-CSN-LVKFEASNNKL-AG-ESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEI 159 (568)
Q Consensus 84 L~~L~l~~n~~~~~~~~~~~~-l~~-L~~L~l~~n~~-~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 159 (568)
|++|++++|.+++..+..+.. ++. |++|++++|.. .. .++.....+++|++|++++|.+.+.....
T Consensus 114 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~---------- 183 (592)
T 3ogk_B 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW---------- 183 (592)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH----------
T ss_pred CCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH----------
Confidence 555555555444333333332 222 55555555441 10 11111224455555555555443221100
Q ss_pred EeccCCCCCCCCccccccccCcEEeecccccccCC----C-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeec
Q 041497 160 NVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF----P-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIIS 234 (568)
Q Consensus 160 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 234 (568)
++..+..+++|+.|+++++.+.+.. + .+..+++|+.|++++|.+.+ ++.. +..+++|+.++++
T Consensus 184 ----------l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~-~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 184 ----------LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGF-FKAAANLEEFCGG 251 (592)
T ss_dssp ----------HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHH-HHHCTTCCEEEEC
T ss_pred ----------HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHH-HhhhhHHHhhccc
Confidence 1112233444444544444443111 1 22334455555555544432 3322 2256667777766
Q ss_pred CCccc---cccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEe
Q 041497 235 GNNLT---GSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVL 311 (568)
Q Consensus 235 ~~~~~---~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 311 (568)
..... ...+..+..+++|+.++++++... ..+..+..+++|++|++++|.+.... +...+..+++|+.|++
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~-----~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETED-----HCTLIQKCPNLEVLET 325 (592)
T ss_dssp BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHH-----HHHHHTTCTTCCEEEE
T ss_pred ccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHH-----HHHHHHhCcCCCEEec
Confidence 43211 123345566778888888775432 34445666778888888877743321 2233567777787777
Q ss_pred ccCcccCcCchhhhcccccceEEEccc-----------CcccCCCChhhhhhccccccCccccccchhhccCCCeeECcc
Q 041497 312 DSNRFGAVLPFSLANLSTTMTGIAFGN-----------NQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHE 380 (568)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~L~l~~-----------~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~ 380 (568)
+ +.+.+.....+....+++++|++++ +.+++.....+ ...+++|++|+++.
T Consensus 326 ~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l-----------------~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 326 R-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL-----------------AQGCQELEYMAVYV 387 (592)
T ss_dssp E-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH-----------------HHHCTTCSEEEEEE
T ss_pred c-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH-----------------HhhCccCeEEEeec
Confidence 7 3333222222222223366666663 22222111110 01155666666666
Q ss_pred CccccccCccccC-cccccccccc----cccccCC-----CCCCccCCCCceEEEcccCC--CCCCCCCchhHHhhhceE
Q 041497 381 NVLQGTIPSFLGN-LTMLTQRLLE----VNDLLGN-----IPPSIGNCKNLILLTTRKNK--PSGTMPRQLPRIITLSVL 448 (568)
Q Consensus 381 ~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~l~~~ 448 (568)
+.+++.....+.. +++|+.|+++ .+.+++. .+..+.++++|+.|++++|. +.+..+..+....+.++.
T Consensus 388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~ 467 (592)
T 3ogk_B 388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467 (592)
T ss_dssp SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence 6666544444443 6667777765 3344432 11124456777777765433 332222222221112255
Q ss_pred EEccCCcccccC-chhhhcCCCCcEEecCCCcccccCCCcc-c-ccccceeecccccccccCCccC-cCCCCCCEEeCCC
Q 041497 449 LNLSDNLLSGHF-PAEVGKLKNLVSLDISSNMFSGEIPTTL-G-CTSLEYLCMQDNSFTGSIPSTL-SSLKSITELDLSR 524 (568)
Q Consensus 449 l~Ls~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~~~~~~~-~-~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~ 524 (568)
|++++|++++.. +..+..+++|++|++++|.+++.....+ . +++|+.|++++|++++.....+ ..+|.+....+..
T Consensus 468 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp EEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred eeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 666666555322 2234556666666666666543322222 2 5666666666666654433333 2445555444443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.8e-27 Score=232.87 Aligned_cols=278 Identities=18% Similarity=0.173 Sum_probs=161.3
Q ss_pred cceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCccc
Q 041497 228 LRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLE 307 (568)
Q Consensus 228 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 307 (568)
....+.+++.++. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+....+. .+..+++|+
T Consensus 33 ~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~ 103 (353)
T 2z80_A 33 NGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED------SFSSLGSLE 103 (353)
T ss_dssp TSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT------TTTTCTTCC
T ss_pred CeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh------hcCCCCCCC
Confidence 3344555555542 232221 3566666666666555544555566666666666655544332 244555566
Q ss_pred EEEeccCcccCcCchhhhcccccceEEEcccCcccCCCC-hhhhhhccccccCccccccchhhccCCCeeECccC-cccc
Q 041497 308 VLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIP-DGIANLVNLNALGVEFNQLAVTILKSLQMLFLHEN-VLQG 385 (568)
Q Consensus 308 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~-~~~~ 385 (568)
+|++++|+++++.+..+..... ++.|++++|.+.+..+ ..+.. +++|++|++++| .+..
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~l~~~~~~~~------------------l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSS-LTFLNLLGNPYKTLGETSLFSH------------------LTKLQILRVGNMDTFTK 164 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTT-CSEEECTTCCCSSSCSSCSCTT------------------CTTCCEEEEEESSSCCE
T ss_pred EEECCCCcCCcCCHhHhCCCcc-CCEEECCCCCCcccCchhhhcc------------------CCCCcEEECCCCccccc
Confidence 6666666555543333333322 4444444444443222 22333 234556666655 3444
Q ss_pred ccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhh
Q 041497 386 TIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVG 465 (568)
Q Consensus 386 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~ 465 (568)
..+..+..+++|+.|++++|.+++..+..+..+++|++|++++| .++......+.
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-------------------------~l~~~~~~~~~ 219 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-------------------------QHILLLEIFVD 219 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-------------------------CSTTHHHHHHH
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC-------------------------ccccchhhhhh
Confidence 44455666666666666666666655666666666655555554 44322223344
Q ss_pred cCCCCcEEecCCCcccccCCCccc----ccccceeecccccccc----cCCccCcCCCCCCEEeCCCCccccCcCccccc
Q 041497 466 KLKNLVSLDISSNMFSGEIPTTLG----CTSLEYLCMQDNSFTG----SIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 537 (568)
Q Consensus 466 ~l~~L~~L~ls~n~l~~~~~~~~~----~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 537 (568)
.+++|++|++++|.+++..+..+. ...++.++++++.+.+ .+|..+..+++|+.|++++|.++...+..|..
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~ 299 (353)
T 2z80_A 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDR 299 (353)
T ss_dssp HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhc
Confidence 567777777777777654433332 4556666666666554 45667888899999999999998655555688
Q ss_pred cccCCeeecccCcccccCCCC
Q 041497 538 LSFLSFLNLSYNHFESKSLFV 558 (568)
Q Consensus 538 l~~L~~L~l~~n~i~~~~~~~ 558 (568)
+++|+.|++++|++.|.||..
T Consensus 300 l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 300 LTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp CTTCCEEECCSSCBCCCHHHH
T ss_pred CCCCCEEEeeCCCccCcCCCc
Confidence 999999999999999998844
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.7e-26 Score=223.56 Aligned_cols=251 Identities=22% Similarity=0.224 Sum_probs=181.0
Q ss_pred EEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCC--Chhhhhhccc
Q 041497 278 WLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFI--PDGIANLVNL 355 (568)
Q Consensus 278 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~~~L 355 (568)
.++.+++.+..++.. ..++++.|++++|.++.+.+..+...+. ++.|++++|.+.... +..+..
T Consensus 11 ~l~c~~~~l~~ip~~---------~~~~l~~L~L~~n~l~~i~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~---- 76 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG---------IPSSATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGCCSQSDFG---- 76 (306)
T ss_dssp EEECCSSCCSSCCSC---------CCTTCCEEECCSSCCCCCCTTTTTTCTT-CSEEECCSSCCCEEEEEEHHHHS----
T ss_pred EEEcCCCCcccCCCC---------CCCCCCEEECCCCccCccCHhHhhcccc-CCEEECCCCccCcccCccccccc----
Confidence 455555555544432 1245555666555555443333333322 555555555544211 222222
Q ss_pred cccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCC-CCccCCCCceEEEcccCCCCCC
Q 041497 356 NALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIP-PSIGNCKNLILLTTRKNKPSGT 434 (568)
Q Consensus 356 ~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~ 434 (568)
+++|++|++++|.+. .++..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus 77 --------------~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 77 --------------TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp --------------CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred --------------ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence 567788888888776 345567778888888888888876554 5677788888888888888777
Q ss_pred CCCchhHHhhhceEEEccCCcccc-cCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCc
Q 041497 435 MPRQLPRIITLSVLLNLSDNLLSG-HFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLS 512 (568)
Q Consensus 435 ~~~~~~~~~~l~~~l~Ls~n~l~~-~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~ 512 (568)
.+..+..+..+ +.|++++|.+++ ..+..+..+++|++|++++|.+++..|..+. +++|+.|++++|.+++..+..+.
T Consensus 142 ~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 142 FNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp STTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred chhhcccCcCC-CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence 77777777766 888888888875 4677888889999999999998877777776 88999999999999877777888
Q ss_pred CCCCCCEEeCCCCccccCcCccccccc-cCCeeecccCcccccCCCC
Q 041497 513 SLKSITELDLSRNNLSGHIPQYLENLS-FLSFLNLSYNHFESKSLFV 558 (568)
Q Consensus 513 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~ 558 (568)
.+++|+.|++++|.+++..+..+..++ +|+.|++++|++.|.|+..
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence 889999999999999888888888884 8999999999999988754
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.6e-26 Score=222.23 Aligned_cols=230 Identities=17% Similarity=0.189 Sum_probs=180.6
Q ss_pred CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCC--CCcccccCCCCcEEeccCCcccccCchhhcCcCcCcee
Q 041497 58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGK--IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLL 135 (568)
Q Consensus 58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 135 (568)
+++++|++++|.++...+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+. .++..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 5788888888888744444567888888888888877622 2455667888888888888877 456667788888888
Q ss_pred ecccccCCCCCC-cccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccccc-CCC-CCCCCCCccEEEeeccc
Q 041497 136 NIAENHLRGQLP-ASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG-MFP-PINNISSLEYIFIHRNI 212 (568)
Q Consensus 136 ~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~-~l~~~~~L~~L~l~~~~ 212 (568)
++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+ ..+ .+..+++|+.|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 888888775443 567788888888888888876677778888888888888888876 333 77888888888888888
Q ss_pred ccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCC-CCcEEECCCCCCCCc
Q 041497 213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQ-NLSWLNLGKNNLGTR 289 (568)
Q Consensus 213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~ 289 (568)
+.+..+..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|++...
T Consensus 187 l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 187 LEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEECTTTT-TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCCcCHHHh-cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 875444444 4788999999999999877777788899999999999999888888888874 899999999988653
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=227.48 Aligned_cols=253 Identities=21% Similarity=0.246 Sum_probs=177.4
Q ss_pred CCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccc
Q 041497 252 LQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTM 331 (568)
Q Consensus 252 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 331 (568)
...++..+..+..++ ..+ .++++.|++++|.+...... .+..+++|+.|++++|.+.++.+..+.++.. |
T Consensus 45 ~~~v~c~~~~l~~iP-~~~--~~~l~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~-L 114 (440)
T 3zyj_A 45 FSKVICVRKNLREVP-DGI--STNTRLLNLHENQIQIIKVN------SFKHLRHLEILQLSRNHIRTIEIGAFNGLAN-L 114 (440)
T ss_dssp SCEEECCSCCCSSCC-SCC--CTTCSEEECCSCCCCEECTT------TTSSCSSCCEEECCSSCCCEECGGGGTTCSS-C
T ss_pred CCEEEeCCCCcCcCC-CCC--CCCCcEEEccCCcCCeeCHH------HhhCCCCCCEEECCCCcCCccChhhccCCcc-C
Confidence 456777777776433 323 26778888888887776543 3567777777777777776665555555433 6
Q ss_pred eEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCccccccccccccc-ccCC
Q 041497 332 TGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVND-LLGN 410 (568)
Q Consensus 332 ~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~ 410 (568)
+.|++++|.+++..+..|..+ ++|++|++++|.+....+..|..+++|+.|+++++. +...
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l------------------~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYL------------------SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSC------------------SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CEEECCCCcCCeeCHhHhhcc------------------ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee
Confidence 666666665554444444332 345555555555554444455566666666665532 3323
Q ss_pred CCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-
Q 041497 411 IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG- 489 (568)
Q Consensus 411 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~- 489 (568)
.+..+.++++|++| ++++|.++ .+| .+..+++|++|++++|++++..+..+.
T Consensus 177 ~~~~~~~l~~L~~L-------------------------~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 229 (440)
T 3zyj_A 177 SEGAFEGLSNLRYL-------------------------NLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG 229 (440)
T ss_dssp CTTTTTTCSSCCEE-------------------------ECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTT
T ss_pred CcchhhcccccCee-------------------------cCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhcc
Confidence 33345555555555 55555554 223 467889999999999999977788887
Q ss_pred ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCc
Q 041497 490 CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVW 559 (568)
Q Consensus 490 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 559 (568)
+++|+.|++++|.++...+..|.++++|+.|++++|.++...++.|..+++|+.|++++|++.|.|...|
T Consensus 230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~ 299 (440)
T 3zyj_A 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILW 299 (440)
T ss_dssp CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchH
Confidence 9999999999999998888999999999999999999998888889999999999999999999998664
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.7e-28 Score=260.52 Aligned_cols=389 Identities=13% Similarity=0.048 Sum_probs=221.6
Q ss_pred CCCCCCeEEeccCCCCCCCCccccc-ccc-CcEEeecccccccC--CC-CCCCCCCccEEEeecccccccCC---CcccC
Q 041497 152 NLSALQEINVNGNRLGGRIPSTRSH-VRN-LISFNVGLNQFSGM--FP-PINNISSLEYIFIHRNIYHGSLP---LDIGV 223 (568)
Q Consensus 152 ~l~~L~~L~l~~~~~~~~~~~~l~~-l~~-L~~L~l~~~~~~~~--~~-~l~~~~~L~~L~l~~~~~~~~~~---~~~~~ 223 (568)
.+++|++|++++|.+.+..+..+.. ++. |++|++++|..... .. ....+++|++|++++|.+.+.-. ..+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4566666666666554433334433 333 66676666652111 01 22356677777777766543211 11223
Q ss_pred CCCCcceEeecCCcccc----ccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhc
Q 041497 224 NLPNLRFFIISGNNLTG----SLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITL 299 (568)
Q Consensus 224 ~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 299 (568)
.+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+. +..+..+++|++|+++......... .....
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~ 265 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMP---EKYMN 265 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG-HHHHHHCTTCCEEEECBCCCCTTCT---TSSSC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH-HHHHhhhhHHHhhcccccccccchH---HHHHH
Confidence 56788888888887752 2333445678888888888887753 3556778888888887533221111 12234
Q ss_pred ccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCC-hhhhhhccccccCccccccchh-------hcc
Q 041497 300 LTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIP-DGIANLVNLNALGVEFNQLAVT-------ILK 371 (568)
Q Consensus 300 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l~~~~~~~~-------~~~ 371 (568)
+..+++|+.++++++... ..+..+... ++++.|++++|.+++... ..+..+++|+.|+++ +.+... .++
T Consensus 266 l~~~~~L~~L~l~~~~~~-~l~~~~~~~-~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPN-EMPILFPFA-AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCK 342 (592)
T ss_dssp CCCCTTCCEEEETTCCTT-TGGGGGGGG-GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCT
T ss_pred hhccccccccCccccchh-HHHHHHhhc-CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCC
Confidence 667788888888775322 233333333 348888888888654333 345778888888887 333222 278
Q ss_pred CCCeeECcc-----------CccccccC-ccccCcccccccccccccccCCCCCCccC-CCCceEEEcc----cCCCCCC
Q 041497 372 SLQMLFLHE-----------NVLQGTIP-SFLGNLTMLTQRLLEVNDLLGNIPPSIGN-CKNLILLTTR----KNKPSGT 434 (568)
Q Consensus 372 ~L~~L~l~~-----------~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~~~~~ 434 (568)
+|++|++++ +.+++... .....+++|+.|+++.+.+++..+..+.. +++|+.|+++ .+.+.+.
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 888888883 44543322 22445788888888777776655555544 7788888886 3344332
Q ss_pred -----CCCchhHHhhhceEEEccCCc--ccccCchhhh-cCCCCcEEecCCCcccccC-CCccc-ccccceeeccccccc
Q 041497 435 -----MPRQLPRIITLSVLLNLSDNL--LSGHFPAEVG-KLKNLVSLDISSNMFSGEI-PTTLG-CTSLEYLCMQDNSFT 504 (568)
Q Consensus 435 -----~~~~~~~~~~l~~~l~Ls~n~--l~~~~~~~l~-~l~~L~~L~ls~n~l~~~~-~~~~~-~~~L~~L~Ls~n~l~ 504 (568)
++..+..+..+ +.|++++|. +++..+..+. .+++|++|++++|.+++.. +.... +++|+.|++++|.++
T Consensus 423 p~~~~~~~~~~~~~~L-~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKL-RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCHHHHHHHHHHCTTC-CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred hHHHHHHHHHHhCCCC-CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 11112333344 667775433 4433333333 3667777777777665422 22222 667777777777665
Q ss_pred ccC-CccCcCCCCCCEEeCCCCccccCcCccc-cccccCCeeeccc
Q 041497 505 GSI-PSTLSSLKSITELDLSRNNLSGHIPQYL-ENLSFLSFLNLSY 548 (568)
Q Consensus 505 ~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~ 548 (568)
+.. +..+..+++|+.|++++|+++......+ ..++.+....+..
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred HHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 432 2333456677777777777665433333 2445555444443
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.2e-25 Score=215.10 Aligned_cols=185 Identities=25% Similarity=0.246 Sum_probs=101.7
Q ss_pred CCeeECccCccccccCccccCccccccccccccc-ccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEc
Q 041497 373 LQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVND-LLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNL 451 (568)
Q Consensus 373 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~L 451 (568)
|++|++++|.+++..+..+..+++|+.|++++|. ++...+..+..+++|++|++++|.+.+..+..+..+..+ +.|++
T Consensus 58 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l 136 (285)
T 1ozn_A 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYL 136 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEEC
T ss_pred CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC-CEEEC
Confidence 3444444444443334444444445555554443 433334444445555555555555444444444444444 55555
Q ss_pred cCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccC
Q 041497 452 SDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 530 (568)
Q Consensus 452 s~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 530 (568)
++|.+++..+..+..+++|++|++++|++++..+..+. +++|+.|++++|.+++..|..|..+++|+.|++++|.+++.
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence 55555544444556666666666666666644444444 66666666666666655566666666666666666666655
Q ss_pred cCccccccccCCeeecccCcccccCCCC
Q 041497 531 IPQYLENLSFLSFLNLSYNHFESKSLFV 558 (568)
Q Consensus 531 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 558 (568)
.++.+..+++|+.|++++|++.|.|+..
T Consensus 217 ~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 217 PTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp CHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred CHHHcccCcccCEEeccCCCccCCCCcH
Confidence 5555666666666666666666666654
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.1e-25 Score=227.97 Aligned_cols=253 Identities=23% Similarity=0.262 Sum_probs=163.6
Q ss_pred CCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccc
Q 041497 252 LQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTM 331 (568)
Q Consensus 252 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 331 (568)
...++.++..++.+ |..+ .++++.|++++|.+....+. .+..+++|+.|++++|.+.++.+..+.++.. |
T Consensus 56 ~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L 125 (452)
T 3zyi_A 56 FSKVVCTRRGLSEV-PQGI--PSNTRYLNLMENNIQMIQAD------TFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS-L 125 (452)
T ss_dssp SCEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECTT------TTTTCTTCCEEECCSSCCCEECTTTTTTCTT-C
T ss_pred CcEEEECCCCcCcc-CCCC--CCCccEEECcCCcCceECHH------HcCCCCCCCEEECCCCccCCcChhhccCccc-C
Confidence 34566666666533 3222 25667777777776665443 2556666666666666665554444444332 4
Q ss_pred eEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccc-cccCC
Q 041497 332 TGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVN-DLLGN 410 (568)
Q Consensus 332 ~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~ 410 (568)
+.|++++|.+++..+..+.. +++|++|++++|.++...+..|..+++|+.|+++++ .+...
T Consensus 126 ~~L~L~~n~l~~~~~~~~~~------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 126 NTLELFDNWLTVIPSGAFEY------------------LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187 (452)
T ss_dssp CEEECCSSCCSBCCTTTSSS------------------CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CEEECCCCcCCccChhhhcc------------------cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc
Confidence 44454444444433333332 223444444444444333334444555555555442 22222
Q ss_pred CCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-
Q 041497 411 IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG- 489 (568)
Q Consensus 411 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~- 489 (568)
.+..+.++++| +.|++++|.+++. + .+..+++|++|++++|++++..|..+.
T Consensus 188 ~~~~~~~l~~L-------------------------~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 240 (452)
T 3zyi_A 188 SEGAFEGLFNL-------------------------KYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHG 240 (452)
T ss_dssp CTTTTTTCTTC-------------------------CEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTT
T ss_pred ChhhccCCCCC-------------------------CEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccC
Confidence 22234444444 5556666666533 2 467788999999999999877788787
Q ss_pred ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCc
Q 041497 490 CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVW 559 (568)
Q Consensus 490 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 559 (568)
+++|+.|++++|.++...+..|..+++|+.|++++|.++...++.|..+++|+.|++++|++.|.|...|
T Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~ 310 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILW 310 (452)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHH
T ss_pred ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchH
Confidence 8999999999999998888899999999999999999998888888999999999999999999998664
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=5.5e-25 Score=224.82 Aligned_cols=228 Identities=23% Similarity=0.235 Sum_probs=132.6
Q ss_pred CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeec
Q 041497 58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI 137 (568)
Q Consensus 58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 137 (568)
+++++|++++|.++...+..|.++++|++|++++|.+++..+..|.++++|++|++++|+++...+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 45666666666666555556666666666666666666555555666666666666666665444444555666666666
Q ss_pred ccccCCCCCCcccCCCCCCCeEEeccCCCCCCC-CccccccccCcEEeecccccccCCCCCCCCCCccEEEeeccccccc
Q 041497 138 AENHLRGQLPASIGNLSALQEINVNGNRLGGRI-PSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGS 216 (568)
Q Consensus 138 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 216 (568)
++|.+....+..+..+++|++|++++|...+.+ +..+..+++|+.|++++|.+.+. +.+.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~------------------ 215 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLT------------------ 215 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCT------------------
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-cccc------------------
Confidence 666655444445556666666666553322222 22344555555555555544422 1222
Q ss_pred CCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchh
Q 041497 217 LPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDF 296 (568)
Q Consensus 217 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 296 (568)
.+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+......
T Consensus 216 -------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---- 284 (452)
T 3zyi_A 216 -------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD---- 284 (452)
T ss_dssp -------TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT----
T ss_pred -------ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH----
Confidence 455666666666666665566666666666666666666666666666666666666666666655443
Q ss_pred hhcccCCCcccEEEeccCccc
Q 041497 297 ITLLTNCTKLEVLVLDSNRFG 317 (568)
Q Consensus 297 ~~~l~~~~~L~~L~l~~~~~~ 317 (568)
.+..+++|+.|++++|.+.
T Consensus 285 --~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 285 --LFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp --SSTTCTTCCEEECCSSCEE
T ss_pred --HhccccCCCEEEccCCCcC
Confidence 2445666677777666654
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=7.2e-25 Score=209.68 Aligned_cols=223 Identities=20% Similarity=0.181 Sum_probs=122.2
Q ss_pred EEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCC
Q 041497 37 IGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 116 (568)
Q Consensus 37 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 116 (568)
+.++.+++.+...+. .-.++|++|++++|.++...+..+.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~---~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCT---TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCc---CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 455556655554332 12356777777777766555556666777777777776666555666666666666666666
Q ss_pred c-ccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC
Q 041497 117 K-LAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP 195 (568)
Q Consensus 117 ~-~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (568)
+ +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 166 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS---- 166 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc----
Confidence 5 55444555666666666666666665554555555566666666555554333233333333333333333222
Q ss_pred CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCC
Q 041497 196 PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQN 275 (568)
Q Consensus 196 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 275 (568)
.++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 167 --------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 167 --------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp --------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred --------------------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 222222224555566666666555555555555555555555555555444444444455
Q ss_pred CcEEECCCCCC
Q 041497 276 LSWLNLGKNNL 286 (568)
Q Consensus 276 L~~L~l~~~~~ 286 (568)
|++|++++|++
T Consensus 227 L~~L~l~~N~~ 237 (285)
T 1ozn_A 227 LQYLRLNDNPW 237 (285)
T ss_dssp CCEEECCSSCE
T ss_pred cCEEeccCCCc
Confidence 55555554444
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=9.8e-25 Score=222.16 Aligned_cols=245 Identities=20% Similarity=0.213 Sum_probs=147.6
Q ss_pred EEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCc
Q 041497 38 GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 117 (568)
Q Consensus 38 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 117 (568)
.++.++..+...+. .+. +++++|++++|.+....+..|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 47 ~v~c~~~~l~~iP~-~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLREVPD-GIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCSSCCS-CCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcCcCCC-CCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 44455555544332 221 466777777777766666667777777777777777765555666777777777777777
Q ss_pred ccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCC-CccccccccCcEEeecccccccCCCC
Q 041497 118 LAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRI-PSTRSHVRNLISFNVGLNQFSGMFPP 196 (568)
Q Consensus 118 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~ 196 (568)
++...+..|..+++|++|++++|.+....+..+..+++|++|++++|.....+ +..+..+++|+.|++++|.+... +.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~ 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PN 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-CC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-cc
Confidence 76554556666777777777777666555556666777777777664332222 23455566666666666655422 12
Q ss_pred CCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCC
Q 041497 197 INNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNL 276 (568)
Q Consensus 197 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L 276 (568)
+. .+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|
T Consensus 203 ~~-------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 203 LT-------------------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp CT-------------------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred cC-------------------------CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 22 45556666666666665555566666666666666666665555556666666
Q ss_pred cEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCccc
Q 041497 277 SWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFG 317 (568)
Q Consensus 277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 317 (568)
+.|++++|.+...... .+..+++|+.|++++|.+.
T Consensus 258 ~~L~L~~N~l~~~~~~------~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHD------LFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEEECTTSCCCCCCTT------TTSSCTTCCEEECCSSCEE
T ss_pred CEEECCCCCCCccChh------HhccccCCCEEEcCCCCcc
Confidence 6666666666554443 2445566666666666554
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.9e-27 Score=227.53 Aligned_cols=248 Identities=20% Similarity=0.196 Sum_probs=138.7
Q ss_pred CeEEEEeccCCccccccCCcccCCCCCceeeccCCccc-ccCCcccC-------CCCCCcEEeCCCCcCCCCCCccc--c
Q 041497 34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFR-AEIPHEVG-------NLFRLQNLTLTNNYFSGKIPTNL--S 103 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~--~ 103 (568)
+.++.+++++|.+ ..+..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++..|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4455556666655 233333322 666666666553 23444433 46666666666666665555554 5
Q ss_pred cCCCCcEEeccCCcccccCchhhcCc-----CcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCC--CCccccc
Q 041497 104 RCSNLVKFEASNNKLAGESPAEIGNL-----LKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGR--IPSTRSH 176 (568)
Q Consensus 104 ~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~ 176 (568)
.+++|++|++++|++.+. |..+..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-- 195 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL-- 195 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS--
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH--
Confidence 666666666666666544 5555544 5666666666666555555556666666666666554321 11122
Q ss_pred cccCcEEeecccccccCCCCCCCCCCccEEEeecccccc--cCCCcccCCCCCcceEeecCCccccccC-ccCCCCCCCC
Q 041497 177 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHG--SLPLDIGVNLPNLRFFIISGNNLTGSLQ-DSLSNATNLQ 253 (568)
Q Consensus 177 l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~ 253 (568)
.+..+++|+.|++++|.+.+ .++..++..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 196 -------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 196 -------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp -------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred -------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 12344444555554444431 2233333355677777777777665443 3445566777
Q ss_pred eEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccC
Q 041497 254 KLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGA 318 (568)
Q Consensus 254 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 318 (568)
.|++++|.++ ..|..+. ++|++|++++|.+...+. +..+++|+.|++++|++++
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~--------~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS--------PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC--------TTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh--------HhhCCCCCEEeccCCCCCC
Confidence 7777777776 3333333 677777777777766521 4566777777777777665
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=5.9e-24 Score=222.53 Aligned_cols=291 Identities=21% Similarity=0.228 Sum_probs=204.7
Q ss_pred CCCCCCCCCCCCceeeec--------eeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCC
Q 041497 10 GVTSSWNNSINLCQWTGV--------TCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNL 81 (568)
Q Consensus 10 ~~~~~~~~~~~~c~~~~~--------~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l 81 (568)
.+.+.|....++|.|.+. .|. ...++.|+++++.+...+ ..+. ++|++|++++|.++ .+|. .+
T Consensus 10 ~~w~~W~~~~~~~~~~~r~~~~~~~~~c~--~~~l~~L~ls~n~L~~lp-~~l~--~~L~~L~L~~N~l~-~lp~---~l 80 (622)
T 3g06_A 10 AVWSAWRRAAPAEESRGRAAVVQKMRACL--NNGNAVLNVGESGLTTLP-DCLP--AHITTLVIPDNNLT-SLPA---LP 80 (622)
T ss_dssp CHHHHHHHTCCGGGHHHHHHHHHHHHHHH--HHCCCEEECCSSCCSCCC-SCCC--TTCSEEEECSCCCS-CCCC---CC
T ss_pred HHHHHHHhcCCcchhccccccCccccccc--CCCCcEEEecCCCcCccC-hhhC--CCCcEEEecCCCCC-CCCC---cC
Confidence 455678777889998542 332 245889999999988543 3343 78999999999887 4665 57
Q ss_pred CCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEe
Q 041497 82 FRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINV 161 (568)
Q Consensus 82 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 161 (568)
++|++|++++|.++ .+|. .+++|++|++++|+++. +|. .+++|++|++++|.+.+ +|.. +++|++|++
T Consensus 81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~L 148 (622)
T 3g06_A 81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEEC
Confidence 89999999999988 4555 67899999999998874 444 57889999999998884 4443 488999999
Q ss_pred ccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccc
Q 041497 162 NGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGS 241 (568)
Q Consensus 162 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 241 (568)
++|.+.+ +|. ..++|+.|++++|.+.... ..+++|+.|++++|.+.+ ++. ..++|+.|++++|.++..
T Consensus 149 s~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~l 216 (622)
T 3g06_A 149 SDNQLAS-LPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTSL 216 (622)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSC
T ss_pred cCCcCCC-cCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCccccc
Confidence 9998873 443 3467888888888877643 445777888887777663 443 346777777777777633
Q ss_pred cCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCc
Q 041497 242 LQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLP 321 (568)
Q Consensus 242 ~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 321 (568)
+. .+++|+.|++++|.++++. ..+++|+.|++++|.+..++. .+++|+.|++++|.++.+ |
T Consensus 217 -~~---~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----------~~~~L~~L~Ls~N~L~~l-p 277 (622)
T 3g06_A 217 -PA---LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----------LPSGLLSLSVYRNQLTRL-P 277 (622)
T ss_dssp -CC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCCSC-C
T ss_pred -CC---CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----------ccccCcEEeCCCCCCCcC-C
Confidence 22 2467777778777776533 345677777777777765442 346677777777777743 4
Q ss_pred hhhhcccccceEEEcccCcccCCCChhhhhhc
Q 041497 322 FSLANLSTTMTGIAFGNNQISGFIPDGIANLV 353 (568)
Q Consensus 322 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~ 353 (568)
..+..++. ++.|++++|.+++..+..+..++
T Consensus 278 ~~l~~l~~-L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 278 ESLIHLSS-ETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp GGGGGSCT-TCEEECCSCCCCHHHHHHHHHHH
T ss_pred HHHhhccc-cCEEEecCCCCCCcCHHHHHhcc
Confidence 44555543 77777777777766666555544
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.2e-27 Score=254.21 Aligned_cols=438 Identities=14% Similarity=0.102 Sum_probs=204.9
Q ss_pred eeeccCCcccccCCcccCCCCCCcEEeCCCCcCC---CCCCcc------------cccCCCCcEEeccCCcccccCchhh
Q 041497 62 SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFS---GKIPTN------------LSRCSNLVKFEASNNKLAGESPAEI 126 (568)
Q Consensus 62 ~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~------------~~~l~~L~~L~l~~n~~~~~~~~~~ 126 (568)
.+++..+... .....+..+++|++|+++++... ...|.. ...+++|++|++++|.++...+..+
T Consensus 47 ~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l 125 (594)
T 2p1m_B 47 KVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125 (594)
T ss_dssp EEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred EEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence 4555543222 12234567788999999887421 111211 2457788888888887765555555
Q ss_pred c-CcCcCceeecccc-cCCCC-CCcccCCCCCCCeEEeccCCCCCCCCcccc----ccccCcEEeecccc--cccC-CC-
Q 041497 127 G-NLLKFQLLNIAEN-HLRGQ-LPASIGNLSALQEINVNGNRLGGRIPSTRS----HVRNLISFNVGLNQ--FSGM-FP- 195 (568)
Q Consensus 127 ~-~l~~L~~L~l~~~-~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~----~l~~L~~L~l~~~~--~~~~-~~- 195 (568)
. .+++|++|++++| .+... ++..+..+++|++|++++|.+.+..+.++. .+++|+.|+++++. +... ..
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 4 5778888888777 33321 223334677788888877776544433333 45567777777664 1100 00
Q ss_pred CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCc-------cccccCccCCCCCCCCeE-ecCCCccccccc
Q 041497 196 PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNN-------LTGSLQDSLSNATNLQKL-DINRNLFSGKVS 267 (568)
Q Consensus 196 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L-~L~~n~~~~~~~ 267 (568)
....+++|+.|++++|...+.++..+ ..+++|+.|+++.+. +.+ .+..+..+++|+.+ .+.+.... ..+
T Consensus 206 l~~~~~~L~~L~L~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~ 282 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAVPLEKLATLL-QRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-YLP 282 (594)
T ss_dssp HHHHCTTCCEEECCTTSCHHHHHHHH-HHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-GGG
T ss_pred HHHhCCCCcEEecCCCCcHHHHHHHH-hcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-hHH
Confidence 12234666666666552211222222 245556666544332 111 11234455555555 23222211 122
Q ss_pred CCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCCh
Q 041497 268 INFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPD 347 (568)
Q Consensus 268 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~ 347 (568)
..+..+++|++|++++|.+... .+...+..+++|+.|++++| +.+.....+....++++.|++.++.-.+
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~-----~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g---- 352 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSY-----DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV---- 352 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHH-----HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC----
T ss_pred HHHHhhCCCCEEEccCCCCCHH-----HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc----
Confidence 2223445566666665553321 12222345555666665554 2211111111111234455443221000
Q ss_pred hhhhhccccccCccccccch-------hhccCCCeeECccCccccccCcccc-Ccccccccccc--c----ccccCCC--
Q 041497 348 GIANLVNLNALGVEFNQLAV-------TILKSLQMLFLHENVLQGTIPSFLG-NLTMLTQRLLE--V----NDLLGNI-- 411 (568)
Q Consensus 348 ~~~~~~~L~~l~l~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~~-- 411 (568)
....+.++. ..+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.++...
T Consensus 353 -----------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 353 -----------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp -----------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred -----------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 001111111 1155666666665665544333332 35666666666 2 2332111
Q ss_pred ---CCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhh-hcCCCCcEEecCCCcccccCCCc
Q 041497 412 ---PPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLKNLVSLDISSNMFSGEIPTT 487 (568)
Q Consensus 412 ---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l-~~l~~L~~L~ls~n~l~~~~~~~ 487 (568)
+..+..+++|+.|++++ .+.+..+..+....+.++.|++++|.+++..+..+ ..+++|++|++++|.+++.....
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~ 500 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA 500 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence 01134566666666654 33332222222212222566666666554333333 44666666666666654322221
Q ss_pred c-c-ccccceeecccccccccCCccC-cCCCCCCEEeCCCC
Q 041497 488 L-G-CTSLEYLCMQDNSFTGSIPSTL-SSLKSITELDLSRN 525 (568)
Q Consensus 488 ~-~-~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~n 525 (568)
+ . +++|+.|++++|+++......+ ..+|.|+...+..+
T Consensus 501 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp TGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 1 2 5666666666666543333333 34455555444444
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.8e-27 Score=252.66 Aligned_cols=453 Identities=14% Similarity=0.094 Sum_probs=245.2
Q ss_pred CCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccC---C------------cccCCCCC
Q 041497 19 INLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEI---P------------HEVGNLFR 83 (568)
Q Consensus 19 ~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~---~------------~~~~~l~~ 83 (568)
..|+.|+.+.. ...+.++++..... .....+.++++|++|+++++.....+ | .....+++
T Consensus 32 ~vck~W~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~ 106 (594)
T 2p1m_B 32 LVCKSWYEIER----WCRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106 (594)
T ss_dssp TSCHHHHHHHH----HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred HHHHHHHHhhh----hhceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCC
Confidence 45667877632 23345555543222 12234678889999999887532111 1 11246789
Q ss_pred CcEEeCCCCcCCCCCCcccc-cCCCCcEEeccCC-ccccc-CchhhcCcCcCceeecccccCCCCCCccc----CCCCCC
Q 041497 84 LQNLTLTNNYFSGKIPTNLS-RCSNLVKFEASNN-KLAGE-SPAEIGNLLKFQLLNIAENHLRGQLPASI----GNLSAL 156 (568)
Q Consensus 84 L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~----~~l~~L 156 (568)
|++|++++|.+++..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+.+..+..+ ..+++|
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L 186 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence 99999999888755555564 6899999999988 44322 34445578999999999988765443333 367799
Q ss_pred CeEEeccCCCCCCCCcc----ccccccCcEEeecccc-cccCCC-CCCCCCCccEEEeeccc-------ccccCCCcccC
Q 041497 157 QEINVNGNRLGGRIPST----RSHVRNLISFNVGLNQ-FSGMFP-PINNISSLEYIFIHRNI-------YHGSLPLDIGV 223 (568)
Q Consensus 157 ~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~-~~~~~~-~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~ 223 (568)
++|++++|. ....... +..+++|+.|++++|. +.+ .+ .+..+++|+.|++..+. +. .++..+ .
T Consensus 187 ~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l-~ 262 (594)
T 2p1m_B 187 VSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL-S 262 (594)
T ss_dssp CEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH-H
T ss_pred cEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHH-HHHHHH-h
Confidence 999999886 1111122 2456899999999883 333 33 56677889999865442 22 122222 3
Q ss_pred CCCCcceE-eecCCccccccCccCCCCCCCCeEecCCCcccccccC-CccCCCCCcEEECCCCCCCCcCCCCchhhhccc
Q 041497 224 NLPNLRFF-IISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSI-NFGGLQNLSWLNLGKNNLGTRTANDLDFITLLT 301 (568)
Q Consensus 224 ~~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 301 (568)
++++|+.+ .+.+.... ..+..+..+++|++|++++|.+.+.... .+..+++|++|++.+| +.. ..+.....
T Consensus 263 ~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-----~~l~~l~~ 335 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED-----AGLEVLAS 335 (594)
T ss_dssp TCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-----HHHHHHHH
T ss_pred cCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-----HHHHHHHH
Confidence 67778877 34332221 2333334578888899888886543222 2457788888888876 321 12222344
Q ss_pred CCCcccEEEecc---------CcccCcCchhhhcccccceEEEcccCcccCCCChhhh-hhccccccCcc--c----ccc
Q 041497 302 NCTKLEVLVLDS---------NRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIA-NLVNLNALGVE--F----NQL 365 (568)
Q Consensus 302 ~~~~L~~L~l~~---------~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~-~~~~L~~l~l~--~----~~~ 365 (568)
.+++|++|++.. +.+++.....+....++++.|.+..+.+++..+..+. .+++|+.|+++ + +.+
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l 415 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence 578888888844 2333322222322223477777666666654444443 34555555554 1 222
Q ss_pred chhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccC-CCCceEEEcccCCCCCCCCCch-hHHh
Q 041497 366 AVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGN-CKNLILLTTRKNKPSGTMPRQL-PRII 443 (568)
Q Consensus 366 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~ 443 (568)
+... ........+..+++|+.|++++ .+++.....+.. +++|++|++++|.+.+.....+ ..+.
T Consensus 416 ~~~~-------------~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 481 (594)
T 2p1m_B 416 TLEP-------------LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481 (594)
T ss_dssp TCCC-------------THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred cCCc-------------hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence 2000 0000001123334444444433 222222222222 4445555555444432222222 1122
Q ss_pred hhceEEEccCCcccccCch-hhhcCCCCcEEecCCCcccccCCCccc--ccccceeeccccc
Q 041497 444 TLSVLLNLSDNLLSGHFPA-EVGKLKNLVSLDISSNMFSGEIPTTLG--CTSLEYLCMQDNS 502 (568)
Q Consensus 444 ~l~~~l~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~~~--~~~L~~L~Ls~n~ 502 (568)
.+ +.|++++|.+++.... ....+++|++|++++|+++......+. ++.|+...+..+.
T Consensus 482 ~L-~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 482 SL-RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp TC-CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred Cc-CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 22 5555555555432222 233467777777777776433333231 5566555555443
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=3.2e-25 Score=215.28 Aligned_cols=264 Identities=19% Similarity=0.166 Sum_probs=177.9
Q ss_pred CCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccc
Q 041497 252 LQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTM 331 (568)
Q Consensus 252 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 331 (568)
++..+++.+.+.......+..+++|++|++++|.+....+. .+..+++|+.|++++|.+.+..+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~---------- 75 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA------DLAPFTKLELLNLSSNVLYETLD---------- 75 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH------HHTTCTTCCEEECTTSCCEEEEE----------
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH------HhhCCCcCCEEECCCCcCCcchh----------
Confidence 33444444444433333344455566666666655543321 24455555555555555544332
Q ss_pred eEEEcccCcccCCCChhhhhhccccccCccccccchhh-ccCCCeeECccCccccccCccccCcccccccccccccccCC
Q 041497 332 TGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI-LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGN 410 (568)
Q Consensus 332 ~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 410 (568)
+..+++|+.|++++|.+.... .++|++|++++|.+++..+. .+++|+.|++++|++++.
T Consensus 76 -----------------~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~ 135 (317)
T 3o53_A 76 -----------------LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITML 135 (317)
T ss_dssp -----------------ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSG
T ss_pred -----------------hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCc
Confidence 344444444444444443222 46788888888887765433 356788888888888877
Q ss_pred CCCCccCCCCceEEEcccCCCCCCCCCchh-HHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc
Q 041497 411 IPPSIGNCKNLILLTTRKNKPSGTMPRQLP-RIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG 489 (568)
Q Consensus 411 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~ 489 (568)
.+..+..+++|++|++++|.+.+..+..+. .+..+ +.|++++|.+++. + ....+++|++|++++|++++ +|..+.
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~ 211 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQ 211 (317)
T ss_dssp GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGG
T ss_pred cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC-CEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhc
Confidence 777788888888888888888776666554 34455 8888888888754 2 33458899999999999985 444455
Q ss_pred -ccccceeecccccccccCCccCcCCCCCCEEeCCCCccc-cCcCccccccccCCeeecccC-cccccCC
Q 041497 490 -CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS-GHIPQYLENLSFLSFLNLSYN-HFESKSL 556 (568)
Q Consensus 490 -~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~i~~~~~ 556 (568)
+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +..+..+..++.|+.++++++ .+.+..|
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 899999999999998 56777888999999999999998 677888889999999998833 3444433
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2.6e-23 Score=196.92 Aligned_cols=167 Identities=18% Similarity=0.223 Sum_probs=108.8
Q ss_pred CCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCC
Q 041497 19 INLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98 (568)
Q Consensus 19 ~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 98 (568)
.++|.|.++.|.- ....+.++++++.+...+. .+. +++++|++++|.+....+.+|.++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTAIPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSSCCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCccCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 3689999988842 1345678888887776432 222 56788888888777655567777888888888888777555
Q ss_pred CcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccc
Q 041497 99 PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVR 178 (568)
Q Consensus 99 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 178 (568)
+..|..+++|++|++++|++....+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+....+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 55567777777777777777755555566677777777777777655555566666666666666665533333344444
Q ss_pred cCcEEeecccc
Q 041497 179 NLISFNVGLNQ 189 (568)
Q Consensus 179 ~L~~L~l~~~~ 189 (568)
+|+.|++++|.
T Consensus 158 ~L~~L~L~~n~ 168 (270)
T 2o6q_A 158 SLKELRLYNNQ 168 (270)
T ss_dssp TCCEEECCSSC
T ss_pred ccceeEecCCc
Confidence 44444444443
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1e-25 Score=218.34 Aligned_cols=247 Identities=16% Similarity=0.163 Sum_probs=171.8
Q ss_pred CCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCccc-ccCchhhc-------CcCcCceeecccccCCCCCCccc-
Q 041497 80 NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA-GESPAEIG-------NLLKFQLLNIAENHLRGQLPASI- 150 (568)
Q Consensus 80 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~-------~l~~L~~L~l~~~~l~~~~~~~~- 150 (568)
..++|++|++++|.+ .+|..+... |++|++++|.+. ..++..+. ++++|++|++++|.+.+..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344455555555555 344433332 555566665552 23444443 56677777777777766666655
Q ss_pred -CCCCCCCeEEeccCCCCCCCCcccccc-----ccCcEEeecccccccCCC-CCCCCCCccEEEeeccccccc--CC-Cc
Q 041497 151 -GNLSALQEINVNGNRLGGRIPSTRSHV-----RNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGS--LP-LD 220 (568)
Q Consensus 151 -~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~--~~-~~ 220 (568)
..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+. .+ ..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 6677777777777777644 6666665 677777777777776664 677777788888877775543 22 22
Q ss_pred ccCCCCCcceEeecCCccccc---cCccCCCCCCCCeEecCCCccccccc-CCccCCCCCcEEECCCCCCCCcCCCCchh
Q 041497 221 IGVNLPNLRFFIISGNNLTGS---LQDSLSNATNLQKLDINRNLFSGKVS-INFGGLQNLSWLNLGKNNLGTRTANDLDF 296 (568)
Q Consensus 221 ~~~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 296 (568)
.+..+++|++|++++|.+++. ....+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+..++..
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~---- 271 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG---- 271 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS----
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh----
Confidence 235889999999999998832 22344577999999999999987664 4466789999999999999866542
Q ss_pred hhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccC
Q 041497 297 ITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISG 343 (568)
Q Consensus 297 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~ 343 (568)
+. ++|+.|++++|++++. +. +...+ +++.|++++|.+++
T Consensus 272 ---~~--~~L~~L~Ls~N~l~~~-p~-~~~l~-~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 ---LP--AKLSVLDLSYNRLDRN-PS-PDELP-QVGNLSLKGNPFLD 310 (312)
T ss_dssp ---CC--SEEEEEECCSSCCCSC-CC-TTTSC-EEEEEECTTCTTTC
T ss_pred ---cc--CCceEEECCCCCCCCC-hh-HhhCC-CCCEEeccCCCCCC
Confidence 22 8999999999999987 33 55554 49999999999875
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.1e-23 Score=199.63 Aligned_cols=213 Identities=20% Similarity=0.192 Sum_probs=181.4
Q ss_pred ceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCC
Q 041497 331 MTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGN 410 (568)
Q Consensus 331 l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 410 (568)
.+.++++++.++.. |..+ .+++++|++++|.++...+..|..+++|+.|++++|.++..
T Consensus 18 ~~~l~~~~~~l~~i-p~~~--------------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i 76 (270)
T 2o6q_A 18 KNSVDCSSKKLTAI-PSNI--------------------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76 (270)
T ss_dssp TTEEECTTSCCSSC-CSCC--------------------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC
T ss_pred CCEEEccCCCCCcc-CCCC--------------------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee
Confidence 56677777776642 3222 34688999999999877767899999999999999999877
Q ss_pred CCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-
Q 041497 411 IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG- 489 (568)
Q Consensus 411 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~- 489 (568)
.+..+.++++|++|++++|.+.+..+..+..+..+ +.|++++|.+++..+..|..+++|++|++++|.+++..+..+.
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL-AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC-CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC
Confidence 77778889999999999999987776677777777 9999999999988888899999999999999999866666566
Q ss_pred ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCccccccc
Q 041497 490 CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEI 565 (568)
Q Consensus 490 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~ 565 (568)
+++|+.|++++|.++...+..|..+++|+.|++++|.++...+..|..+++|+.|++++|++.|.|+....+..|+
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l 231 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWL 231 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHH
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHH
Confidence 9999999999999998877889999999999999999998888889999999999999999999998654444454
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=6.8e-25 Score=225.23 Aligned_cols=244 Identities=17% Similarity=0.161 Sum_probs=178.0
Q ss_pred cccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCccccccchhh-ccCCCeeECccCcc
Q 041497 305 KLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTI-LKSLQMLFLHENVL 383 (568)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~L~~L~l~~~~~ 383 (568)
+|+.|++++|.+.+..+..+..++. ++.|++++|.+++..| +..+++|+.|++++|.+.... .++|+.|++++|.+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTT-CCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCC-CCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 4455555555444444444443332 5555555555444333 455555555555555554322 46788888888888
Q ss_pred ccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchh-HHhhhceEEEccCCcccccCch
Q 041497 384 QGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLP-RIITLSVLLNLSDNLLSGHFPA 462 (568)
Q Consensus 384 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~~l~Ls~n~l~~~~~~ 462 (568)
++..+. .+++|+.|++++|.+++..+..+.++++|+.|++++|.+.+..+..+. .+..+ +.|+|++|.+++..
T Consensus 112 ~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-~~L~Ls~N~l~~~~-- 185 (487)
T 3oja_A 112 SRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYNFIYDVK-- 185 (487)
T ss_dssp CCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTSCCCEEE--
T ss_pred CCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-cEEecCCCcccccc--
Confidence 765443 357888999999999888888888889999999999988887777776 45555 89999999988652
Q ss_pred hhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccc-cCcCcccccccc
Q 041497 463 EVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS-GHIPQYLENLSF 540 (568)
Q Consensus 463 ~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~ 540 (568)
....+++|+.|++++|.+++..+. +. +++|+.|+|++|.++ .+|..+..+++|+.|++++|++. +.+|..+..++.
T Consensus 186 ~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 344689999999999999865454 55 999999999999998 46777889999999999999987 567788888899
Q ss_pred CCeeecc-------cCcccccCCCCc
Q 041497 541 LSFLNLS-------YNHFESKSLFVW 559 (568)
Q Consensus 541 L~~L~l~-------~n~i~~~~~~~~ 559 (568)
|+.++++ .++..|.+|...
T Consensus 264 L~~l~~~~~~~~~~~~~~~c~~~~~~ 289 (487)
T 3oja_A 264 VQTVAKQTVKKLTGQNEEECTVPTLG 289 (487)
T ss_dssp HHHHHHHHHHHHTSSSSCCCSSTTCE
T ss_pred CcEEeccccccccCCCcccccCCccc
Confidence 9999887 888888887654
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.1e-23 Score=200.48 Aligned_cols=214 Identities=19% Similarity=0.168 Sum_probs=149.2
Q ss_pred ceEEEcccCcccCCCChhhhhhccccccCccccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCC
Q 041497 331 MTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGN 410 (568)
Q Consensus 331 l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 410 (568)
++.|++++|.+++..+..+..+ ++|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSF------------------PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTC------------------TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred ccEEECCCCcccccCHhHhccc------------------cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 5555555555554444444443 3455555555555544444566666666666666666655
Q ss_pred CCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCccccc-CchhhhcCCCCcEEecCCCcccccCCCccc
Q 041497 411 IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGH-FPAEVGKLKNLVSLDISSNMFSGEIPTTLG 489 (568)
Q Consensus 411 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~ 489 (568)
.+..+.++++|++|++++|.+.+..+..+..+..+ +.|++++|.+++. .|..+..+++|++|++++|++++..+..+.
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC-CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCC-CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence 55566666666666666666665555455555555 7777777777653 477888999999999999999866666665
Q ss_pred -ccccc----eeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCcccccc
Q 041497 490 -CTSLE----YLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDE 564 (568)
Q Consensus 490 -~~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ 564 (568)
+.+|+ .|++++|.+++..+..+.. .+|+.|++++|.+++..+..|..+++|+.|++++|++.|.||.......|
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~ 249 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 249 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred hhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHH
Confidence 67776 8899999998666655544 58999999999999887778899999999999999999999865433333
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=3.6e-25 Score=214.90 Aligned_cols=241 Identities=16% Similarity=0.156 Sum_probs=147.2
Q ss_pred CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497 34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 113 (568)
..+...+++.+.+.......+..+++|++|++++|.+.+..|..+.++++|++|++++|.+++..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 445666777777766655556677788888888888876666778888888888888888764333 777888888888
Q ss_pred cCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccC
Q 041497 114 SNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGM 193 (568)
Q Consensus 114 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (568)
++|++++. + ..++|++|++++|.+.+..+ ..+++|++|++++|.+....+..+..+++|+.|++++|.+.+.
T Consensus 88 s~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQEL-L----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEE-E----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCccccc-c----CCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 88877632 2 33777777777777764322 2356677777777776654455555666666666666655433
Q ss_pred CCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCC
Q 041497 194 FPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGL 273 (568)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~ 273 (568)
. +..+...+++|++|++++|.+++... ...+++|++|++++|.+.+..+. +..+
T Consensus 160 ~-----------------------~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l 213 (317)
T 3o53_A 160 N-----------------------FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSA 213 (317)
T ss_dssp E-----------------------GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGG
T ss_pred c-----------------------HHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hccc
Confidence 2 22222234555555555555554311 22355566666666665544332 5555
Q ss_pred CCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCccc
Q 041497 274 QNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFG 317 (568)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 317 (568)
++|+.|++++|.+..++. .+..+++|+.|++++|++.
T Consensus 214 ~~L~~L~L~~N~l~~l~~-------~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 214 AGVTWISLRNNKLVLIEK-------ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCSEEECTTSCCCEECT-------TCCCCTTCCEEECTTCCCB
T ss_pred CcccEEECcCCcccchhh-------HhhcCCCCCEEEccCCCcc
Confidence 566666666655554332 1344555555555555554
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=7.7e-23 Score=214.10 Aligned_cols=268 Identities=22% Similarity=0.236 Sum_probs=149.2
Q ss_pred CccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEEC
Q 041497 202 SLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNL 281 (568)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 281 (568)
.++.|+++++.++ .+|..+. ++|+.|++++|.++.. +. .+++|+.|++++|.++++.. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 3555666555554 4444332 4556666666555532 22 34555566666655553322 3455555555
Q ss_pred CCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCcc
Q 041497 282 GKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGVE 361 (568)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~ 361 (568)
++|.+...+. .+++|+.|++++|+++.+... ..+++.|++++|.+++. |
T Consensus 109 s~N~l~~l~~----------~l~~L~~L~L~~N~l~~lp~~-----l~~L~~L~Ls~N~l~~l-~--------------- 157 (622)
T 3g06_A 109 FSNPLTHLPA----------LPSGLCKLWIFGNQLTSLPVL-----PPGLQELSVSDNQLASL-P--------------- 157 (622)
T ss_dssp CSCCCCCCCC----------CCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSCC-C---------------
T ss_pred cCCcCCCCCC----------CCCCcCEEECCCCCCCcCCCC-----CCCCCEEECcCCcCCCc-C---------------
Confidence 5555544322 234455555555555443221 12344555555444431 1
Q ss_pred ccccchhhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhH
Q 041497 362 FNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPR 441 (568)
Q Consensus 362 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 441 (568)
..+++|+.|++++|.++. ++ ..+++|+.|++++|.+++. +. ..++|+.|++++|.+.. ++..+
T Consensus 158 ------~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~~~-- 220 (622)
T 3g06_A 158 ------ALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPALP-- 220 (622)
T ss_dssp ------CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCCCC--
T ss_pred ------CccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCCCC--
Confidence 114556777777777664 22 3456777777777777642 22 23567777777776653 22222
Q ss_pred HhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecccccccccCCccCcCCCCCCEEe
Q 041497 442 IITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELD 521 (568)
Q Consensus 442 ~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 521 (568)
..+ +.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|+|++|.++ .+|..+.++++|+.|+
T Consensus 221 -~~L-~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 221 -SGL-KELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 290 (622)
T ss_dssp -TTC-CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred -CCC-CEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence 223 667777777764 33 34567777777777776 4444 4567777777777777 5566677777777777
Q ss_pred CCCCccccCcCccccccc
Q 041497 522 LSRNNLSGHIPQYLENLS 539 (568)
Q Consensus 522 l~~n~l~~~~~~~~~~l~ 539 (568)
+++|++++..|..+..++
T Consensus 291 L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 291 LEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCSCCCCHHHHHHHHHHH
T ss_pred ecCCCCCCcCHHHHHhcc
Confidence 777777766666555544
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=2.1e-22 Score=191.49 Aligned_cols=206 Identities=18% Similarity=0.186 Sum_probs=147.5
Q ss_pred CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeec
Q 041497 58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI 137 (568)
Q Consensus 58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 137 (568)
++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|++....+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35777777777776555556777777777777777777555666777777777777777777666666777777777777
Q ss_pred ccccCCCCCCcccCCCCCCCeEEeccCCCCC-CCCccccccccCcEEeecccccccCCC-CCCCCCCcc----EEEeecc
Q 041497 138 AENHLRGQLPASIGNLSALQEINVNGNRLGG-RIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLE----YIFIHRN 211 (568)
Q Consensus 138 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~----~L~l~~~ 211 (568)
++|.+.+..+..++.+++|++|++++|.+.. .+|..+..+++|+.|++++|.+.+..+ .+..++.|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 7777776555567777777777777777764 246777777777777777777766544 444444444 7777777
Q ss_pred cccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCccccc
Q 041497 212 IYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGK 265 (568)
Q Consensus 212 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~ 265 (568)
.+. .++...+ ...+|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 188 ~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 188 PMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ccc-ccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 776 3444444 345799999999998877777778889999999999988754
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.8e-22 Score=192.65 Aligned_cols=183 Identities=25% Similarity=0.216 Sum_probs=158.3
Q ss_pred ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEE
Q 041497 370 LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLL 449 (568)
Q Consensus 370 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l 449 (568)
.++++.|++++|.+++..+..+..+++|+.|++++|.+++..+. ..+++|++|++++|.+. .+|..+..+..+ +.|
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L-~~L 105 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL-TVL 105 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTC-CEE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCC-CEE
Confidence 35688999999999877778899999999999999998765443 67899999999999887 566667777777 999
Q ss_pred EccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccc
Q 041497 450 NLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 528 (568)
Q Consensus 450 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 528 (568)
++++|++++..+..|..+++|++|++++|+++...+..+. +++|+.|+|++|+++...+..|..+++|+.|++++|.++
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 9999999977778899999999999999999966666666 999999999999999777777889999999999999999
Q ss_pred cCcCccccccccCCeeecccCcccccCCC
Q 041497 529 GHIPQYLENLSFLSFLNLSYNHFESKSLF 557 (568)
Q Consensus 529 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 557 (568)
.+|..+...++|+.+++++|++.|.|..
T Consensus 186 -~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 186 -TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp -CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred -ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 5677777888999999999999999854
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.2e-22 Score=205.35 Aligned_cols=218 Identities=15% Similarity=0.143 Sum_probs=122.8
Q ss_pred ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCc
Q 041497 54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ 133 (568)
Q Consensus 54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 133 (568)
...+++|++|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++.. ..++|+
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence 3445577777777777776666677777777777777777764333 677777777777777776322 236777
Q ss_pred eeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-CCC-CCCCccEEEeecc
Q 041497 134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PIN-NISSLEYIFIHRN 211 (568)
Q Consensus 134 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~-~~~~L~~L~l~~~ 211 (568)
+|++++|.+.+..+ ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+ .+. .+++|+.|++++|
T Consensus 103 ~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 77777777764332 235667777777777765555566666666666666666654433 222 3444444444444
Q ss_pred cccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCC
Q 041497 212 IYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNL 286 (568)
Q Consensus 212 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~ 286 (568)
.+.+. +... .+++|+.|++++|.+++..+ .+..+++|+.|++++|.+.+ .|..+..+++|+.|++++|.+
T Consensus 180 ~l~~~-~~~~--~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 180 FIYDV-KGQV--VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCCEE-ECCC--CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred ccccc-cccc--cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 44322 1111 24444444444444443222 24444444444444444443 222344444444444444443
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1e-21 Score=186.14 Aligned_cols=182 Identities=19% Similarity=0.202 Sum_probs=89.2
Q ss_pred ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEE
Q 041497 370 LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLL 449 (568)
Q Consensus 370 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l 449 (568)
+++|+.+++++|.++.. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+..+ +.|
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL-KEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC-CEE
Confidence 44445555554444321 2344445555555555544431 234445555555555555544444334444444 555
Q ss_pred EccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccc
Q 041497 450 NLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 528 (568)
Q Consensus 450 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 528 (568)
++++|.+++..+..+..+++|++|++++|.+++..+..+. +++|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 5555555544444455555555555555555533333333 555555555555555444444455555555555555555
Q ss_pred cCcCccccccccCCeeecccCcccccCC
Q 041497 529 GHIPQYLENLSFLSFLNLSYNHFESKSL 556 (568)
Q Consensus 529 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 556 (568)
+..+..+..+++|+.|++++|++.|.||
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 5444445555555555555555555554
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.3e-21 Score=183.04 Aligned_cols=190 Identities=17% Similarity=0.141 Sum_probs=147.2
Q ss_pred cCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEE
Q 041497 371 KSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLN 450 (568)
Q Consensus 371 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~ 450 (568)
++.++++++++.++ .++..+. +.++.|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+..+ +.|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL-GTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC-CEEE
Confidence 34567777777776 3444443 577788888888877777777778888888888888777766666666666 8888
Q ss_pred ccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCcccc
Q 041497 451 LSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 529 (568)
Q Consensus 451 Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 529 (568)
+++|.+++..+..|..+++|++|++++|++++..+..+. +++|+.|+|++|++++..+..|..+++|++|++++|.+++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 888888877777788889999999999998866565666 8999999999999987777788888999999999999988
Q ss_pred CcCccccccccCCeeecccCcccccCCCCcccccc
Q 041497 530 HIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDE 564 (568)
Q Consensus 530 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ 564 (568)
..+..|..+++|+.|++++|++.|.+.....+..|
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~ 204 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQW 204 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHH
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHH
Confidence 87778888899999999999998885444333333
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.6e-21 Score=183.33 Aligned_cols=209 Identities=19% Similarity=0.261 Sum_probs=136.2
Q ss_pred ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCc
Q 041497 54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ 133 (568)
Q Consensus 54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 133 (568)
+..+++|++|+++++.+.. + ..+..+++|++|++++|.+++ . ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4566667777777666552 2 245666777777777776663 2 3566667777777777766655555566677777
Q ss_pred eeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-CCCCCCCccEEEeeccc
Q 041497 134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNI 212 (568)
Q Consensus 134 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~ 212 (568)
+|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 77777777665555556667777777777776665445556667777777777776665555 45667777777777777
Q ss_pred ccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCC
Q 041497 213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQ 274 (568)
Q Consensus 213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~ 274 (568)
+.+ ++...+..+++|+.|++++|.+. ..+++|+.++++.|.+.+..|..++.++
T Consensus 193 l~~-~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 193 LKS-VPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CSC-CCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCc-cCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 664 33344446777888888777654 2356677788888877777776665543
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.6e-20 Score=179.28 Aligned_cols=203 Identities=21% Similarity=0.217 Sum_probs=101.7
Q ss_pred ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCc
Q 041497 54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ 133 (568)
Q Consensus 54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 133 (568)
+++++++++++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++.. +. ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence 344555555555555554 3343332 4555555555555544444555555555555555555432 11 13455555
Q ss_pred eeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccc
Q 041497 134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIY 213 (568)
Q Consensus 134 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 213 (568)
+|++++|.+. .+|..+..+++|++|++++|++....+..+..+++|+.|++++|.+..
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--------------------- 138 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT--------------------- 138 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC---------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc---------------------
Confidence 5555555554 344445555555555555555543333444445555555555444443
Q ss_pred cccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCC
Q 041497 214 HGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLG 287 (568)
Q Consensus 214 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 287 (568)
++...+..+++|+.|++++|+++...+..+..+++|+.|++++|.++.+ |..+...++|+.+++++|++.
T Consensus 139 ---~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 139 ---LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ---CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred ---cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCcc
Confidence 2333333445555555555555544444455555566666666655532 333344455666666665553
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=9.9e-21 Score=177.06 Aligned_cols=189 Identities=19% Similarity=0.243 Sum_probs=150.9
Q ss_pred CCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCC
Q 041497 20 NLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIP 99 (568)
Q Consensus 20 ~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 99 (568)
.|+.|.|..|. ...++++++++.+...+.. +. +++++|++++|.+.+..+..+.++++|++|++++|.+++..+
T Consensus 3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCN---EGKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEE---GGGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcC---CCCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 57889999995 3456788998888865432 33 589999999999988788889999999999999999987778
Q ss_pred cccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCcccccccc
Q 041497 100 TNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRN 179 (568)
Q Consensus 100 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 179 (568)
..|..+++|++|++++|+++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 78899999999999999998776777888999999999999988766666788899999999999888655557788888
Q ss_pred CcEEeecccccccCCC-CCCCCCCccEEEeeccccc
Q 041497 180 LISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYH 214 (568)
Q Consensus 180 L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~ 214 (568)
|+.|++++|.+.+..+ .+..+++|+.|++++|.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 8888888888776554 4555566666666655543
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=2.2e-23 Score=204.54 Aligned_cols=270 Identities=17% Similarity=0.200 Sum_probs=179.2
Q ss_pred CCCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCC--CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 041497 18 SINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNL--SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFS 95 (568)
Q Consensus 18 ~~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~--~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 95 (568)
+..|..|+.+.|.. ..++++|++++.+.. ..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.++
T Consensus 33 ~~vc~~W~~~~~~~--~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~ 106 (336)
T 2ast_B 33 SGVCKRWYRLASDE--SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE 106 (336)
T ss_dssp TSSCHHHHHHHTCS--TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC
T ss_pred HHHHHHHHHHhcCc--hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC
Confidence 45677798887753 457789999887763 345666 7899999999988765554 557888999999988876
Q ss_pred CC-CCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccc-cCCC-CCCcccCCCCCCCeEEeccC-CCCCC-C
Q 041497 96 GK-IPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAEN-HLRG-QLPASIGNLSALQEINVNGN-RLGGR-I 170 (568)
Q Consensus 96 ~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~-~l~~-~~~~~~~~l~~L~~L~l~~~-~~~~~-~ 170 (568)
+. ++..+..+++|++|++++|.+....+..+..+++|++|++++| .+.+ .++..+..+++|++|++++| .+... .
T Consensus 107 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 186 (336)
T 2ast_B 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186 (336)
T ss_dssp HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH
T ss_pred HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH
Confidence 44 6666788888888888888887667777888888888888888 4543 14445667788888888877 66532 3
Q ss_pred Cccccccc-cCcEEeecccccccCCCCCCCCCCccEEEeeccccc-ccCCCcccCCCCCcceEeecCCc-cccccCccCC
Q 041497 171 PSTRSHVR-NLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYH-GSLPLDIGVNLPNLRFFIISGNN-LTGSLQDSLS 247 (568)
Q Consensus 171 ~~~l~~l~-~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~ 247 (568)
+..+..++ +|++|++++|.. .++ +.++.. +..+++|++|++++|. +++..+..+.
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~---------------------~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRK---------------------NLQKSDLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGG---------------------GSCHHHHHHH-HHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred HHHHHhcccCCCEEEeCCCcc---------------------cCCHHHHHHH-HhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 44556666 777777766632 111 122222 2256677777777776 5555555667
Q ss_pred CCCCCCeEecCCCc-ccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCC-CcccEEEeccCcccCcCchhhh
Q 041497 248 NATNLQKLDINRNL-FSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNC-TKLEVLVLDSNRFGAVLPFSLA 325 (568)
Q Consensus 248 ~~~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~ 325 (568)
.+++|+.|++++|. +.......++.+++|+.|++++| +.. .. +..+ ..++.|++++|.+++..+..+.
T Consensus 245 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~------~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GT------LQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TC------HHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HH------HHHHHhhCcceEEecccCccccCCccc
Confidence 77777888887774 33222234666778888888777 222 11 1111 2355556788888776665544
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=9.4e-21 Score=175.94 Aligned_cols=196 Identities=16% Similarity=0.186 Sum_probs=124.1
Q ss_pred CCceeeccCCcccccCCcccCCCCCCcEEeCCCCc-CCCCCCcccccCCCCcEEeccC-CcccccCchhhcCcCcCceee
Q 041497 59 FLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNY-FSGKIPTNLSRCSNLVKFEASN-NKLAGESPAEIGNLLKFQLLN 136 (568)
Q Consensus 59 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~ 136 (568)
++++|++++|.++...+..|.++++|++|++++|. ++...+..|.++++|++|++++ |+++...+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 68888888888876666677788888888888886 7655566777788888888887 777766566677777777777
Q ss_pred cccccCCCCCCcccCCCCCCC---eEEeccC-CCCCCCCccccccccCc-EEeecccccccCCCCCCCCCCccEEEeecc
Q 041497 137 IAENHLRGQLPASIGNLSALQ---EINVNGN-RLGGRIPSTRSHVRNLI-SFNVGLNQFSGMFPPINNISSLEYIFIHRN 211 (568)
Q Consensus 137 l~~~~l~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 211 (568)
+++|.+.+ +|. +..+++|+ +|++++| .+....+..+..+++|+ .|++++|.+.
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-------------------- 169 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-------------------- 169 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--------------------
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--------------------
Confidence 77777764 444 66666666 6666666 55433333344444444 4444444333
Q ss_pred cccccCCCcccCCCCCcceEeecCCc-cccccCccCCCC-CCCCeEecCCCcccccccCCccCCCCCcEEECCCC
Q 041497 212 IYHGSLPLDIGVNLPNLRFFIISGNN-LTGSLQDSLSNA-TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKN 284 (568)
Q Consensus 212 ~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~-~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~ 284 (568)
.++...+.. ++|+.|++++|+ ++...+..|..+ ++|+.|++++|.+++..+. .+++|+.|++.++
T Consensus 170 ----~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 ----SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp ----EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred ----ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 334443323 566666666663 665555556666 6666666666666544332 4455566655543
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=2.8e-22 Score=198.42 Aligned_cols=265 Identities=16% Similarity=0.189 Sum_probs=164.1
Q ss_pred EeccCCccccccCCcccCCCCCceeeccCCcccccCC----cccCCCC-CCcEEeCCCCcCCCCCCcccccC-----CCC
Q 041497 39 LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIP----HEVGNLF-RLQNLTLTNNYFSGKIPTNLSRC-----SNL 108 (568)
Q Consensus 39 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L 108 (568)
.+++.+.+.+..+..+...++|++|++++|.+.+..+ .++..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677888888777766677778999999888876655 6677888 88888888888886667666664 888
Q ss_pred cEEeccCCcccccCchhhc----Cc-CcCceeecccccCCCCCCccc----CC-CCCCCeEEeccCCCCCCCCcc----c
Q 041497 109 VKFEASNNKLAGESPAEIG----NL-LKFQLLNIAENHLRGQLPASI----GN-LSALQEINVNGNRLGGRIPST----R 174 (568)
Q Consensus 109 ~~L~l~~n~~~~~~~~~~~----~l-~~L~~L~l~~~~l~~~~~~~~----~~-l~~L~~L~l~~~~~~~~~~~~----l 174 (568)
++|++++|+++...+..+. .+ ++|++|++++|.+.+..+..+ .. .++|++|++++|.+....+.. +
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 8888888888766655443 33 788888888888775444333 33 257888888888776433322 2
Q ss_pred cccc-cCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCC-CCcceEeecCCccccc----cCccCC
Q 041497 175 SHVR-NLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNL-PNLRFFIISGNNLTGS----LQDSLS 247 (568)
Q Consensus 175 ~~l~-~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~----~~~~l~ 247 (568)
...+ +|++|++++|.+.+..+ .+.. .+ ... ++|++|++++|.+.+. .+..+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~--------------------~l-~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAK--------------------FL-ASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHH--------------------HH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHH--------------------HH-HhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 3333 67777777666654332 1110 00 122 3556666666655542 122222
Q ss_pred C-CCCCCeEecCCCccccccc----CCccCCCCCcEEECCCCCCCCcCCCC-chhhhcccCCCcccEEEeccCcccCcCc
Q 041497 248 N-ATNLQKLDINRNLFSGKVS----INFGGLQNLSWLNLGKNNLGTRTAND-LDFITLLTNCTKLEVLVLDSNRFGAVLP 321 (568)
Q Consensus 248 ~-~~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 321 (568)
. .++|++|++++|.+.+..+ ..+..+++|++|++++|.+....... ..+...+..+++|+.+++++|++....+
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 2 3466666666666654333 22345566666666666644333221 1223345667778888888887766544
Q ss_pred hhh
Q 041497 322 FSL 324 (568)
Q Consensus 322 ~~~ 324 (568)
..+
T Consensus 302 ~~~ 304 (362)
T 3goz_A 302 IPI 304 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=5.9e-20 Score=170.52 Aligned_cols=197 Identities=14% Similarity=0.132 Sum_probs=153.7
Q ss_pred CeEEEEeccCCccccccCCcccCCCCCceeeccCCc-ccccCCcccCCCCCCcEEeCCC-CcCCCCCCcccccCCCCcEE
Q 041497 34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNS-FRAEIPHEVGNLFRLQNLTLTN-NYFSGKIPTNLSRCSNLVKF 111 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L 111 (568)
..++.|++++|.+.+..+..|..+++|++|++++|. ++...+.+|.++++|++|++++ |.++...+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478999999999999888889999999999999997 8766667899999999999998 99997777889999999999
Q ss_pred eccCCcccccCchhhcCcCcCc---eeecccc-cCCCCCCcccCCCCCCC-eEEeccCCCCCCCCccccccccCcEEeec
Q 041497 112 EASNNKLAGESPAEIGNLLKFQ---LLNIAEN-HLRGQLPASIGNLSALQ-EINVNGNRLGGRIPSTRSHVRNLISFNVG 186 (568)
Q Consensus 112 ~l~~n~~~~~~~~~~~~l~~L~---~L~l~~~-~l~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 186 (568)
++++|++++ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ +|++++|.+. .+|......++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 999999985 565 88888888 9999999 88866667799999999 9999999987 555443333677888887
Q ss_pred ccc-cccCCCCCCCCCCccEEEeecccccccCCCcccCCC-CCcceEeecCCccccccCccCCCCCCCCeEecCCC
Q 041497 187 LNQ-FSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNL-PNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRN 260 (568)
Q Consensus 187 ~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n 260 (568)
+|+ +... +...+..+ ++|+.|++++|.++...+. .+++|+.|++.++
T Consensus 188 ~n~~l~~i------------------------~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVI------------------------DKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEE------------------------CTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccC------------------------CHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 774 5533 22333344 5566666666655533222 3455666666554
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=9.6e-21 Score=183.13 Aligned_cols=205 Identities=17% Similarity=0.189 Sum_probs=110.1
Q ss_pred CCCcEEeCCCCcCCCCCCccc--ccCCCCcEEeccCCcccccCc----hhhcCcCcCceeecccccCCCCCCcccCCCCC
Q 041497 82 FRLQNLTLTNNYFSGKIPTNL--SRCSNLVKFEASNNKLAGESP----AEIGNLLKFQLLNIAENHLRGQLPASIGNLSA 155 (568)
Q Consensus 82 ~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~ 155 (568)
++|++|++++|.+++..|..+ ..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..+..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555554444444 445555555555555443222 22233445555555555544444444444444
Q ss_pred CCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC--CCCCCCCccEEEeecccccc--cCCCcccCCCCCcceE
Q 041497 156 LQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP--PINNISSLEYIFIHRNIYHG--SLPLDIGVNLPNLRFF 231 (568)
Q Consensus 156 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L 231 (568)
|++|++++|++.+.. +... .+..+++|+.|++++|.++. ..+..++..+++|++|
T Consensus 171 L~~L~Ls~N~l~~~~---------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L 229 (310)
T 4glp_A 171 LTSLDLSDNPGLGER---------------------GLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSL 229 (310)
T ss_dssp CCEEECCSCTTCHHH---------------------HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSE
T ss_pred CCEEECCCCCCccch---------------------hhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEE
Confidence 555554444432100 0111 22345555555555555431 1111122356777777
Q ss_pred eecCCccccccCccCCCC---CCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccE
Q 041497 232 IISGNNLTGSLQDSLSNA---TNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEV 308 (568)
Q Consensus 232 ~l~~~~~~~~~~~~l~~~---~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 308 (568)
++++|.+.+..|..+..+ ++|++|++++|.++.+ |..+. ++|++|++++|.+...+. +..+++|+.
T Consensus 230 ~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l~~~~~--------~~~l~~L~~ 298 (310)
T 4glp_A 230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRLNRAPQ--------PDELPEVDN 298 (310)
T ss_dssp ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCCCSCCC--------TTSCCCCSC
T ss_pred ECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcCCCCch--------hhhCCCccE
Confidence 777777776655555554 5788888888877743 43332 678888888887776432 346677888
Q ss_pred EEeccCcccC
Q 041497 309 LVLDSNRFGA 318 (568)
Q Consensus 309 L~l~~~~~~~ 318 (568)
|++++|++++
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 8888887764
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=8.5e-21 Score=183.51 Aligned_cols=226 Identities=15% Similarity=0.126 Sum_probs=153.5
Q ss_pred CeEEEEeccCCccccccCC---cccCCCCCceeeccCCcccccCCccc--CCCCCCcEEeCCCCcCCCCCC----ccccc
Q 041497 34 QRVIGLDLRHQSIGGFLSP---FVGNLSFLRSINLANNSFRAEIPHEV--GNLFRLQNLTLTNNYFSGKIP----TNLSR 104 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~---~~~~~~~L~~L~ls~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~ 104 (568)
..++.+++.+..+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3466677777666532211 12345779999999999998888888 899999999999999986554 33457
Q ss_pred CCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCC--C--CcccCCCCCCCeEEeccCCCCCCCCc----cccc
Q 041497 105 CSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQ--L--PASIGNLSALQEINVNGNRLGGRIPS----TRSH 176 (568)
Q Consensus 105 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~ 176 (568)
+++|++|++++|++....+..+..+++|++|++++|.+.+. . +..++.+++|++|++++|.+. ..+. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 99999999999999887788999999999999999987531 1 233478899999999999986 2333 2466
Q ss_pred cccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeE
Q 041497 177 VRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKL 255 (568)
Q Consensus 177 l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 255 (568)
+++|++|++++|.+.+..+ .+..+. .+++|++|++++|+++ ..|..+. ++|+.|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~----------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L 277 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCM----------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVL 277 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCC----------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred CCCCCEEECCCCCCCccchhhHHhcc----------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence 7888888888888876533 333321 1234555555555544 2233221 455555
Q ss_pred ecCCCcccccccCCccCCCCCcEEECCCCCCC
Q 041497 256 DINRNLFSGKVSINFGGLQNLSWLNLGKNNLG 287 (568)
Q Consensus 256 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 287 (568)
++++|++++... +..+++|+.|++++|++.
T Consensus 278 ~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 278 DLSSNRLNRAPQ--PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp ECCSCCCCSCCC--TTSCCCCSCEECSSTTTS
T ss_pred ECCCCcCCCCch--hhhCCCccEEECcCCCCC
Confidence 555555553311 344555555555555554
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=3.5e-22 Score=197.69 Aligned_cols=267 Identities=16% Similarity=0.153 Sum_probs=181.3
Q ss_pred eeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCC----cccccCC-CCcEEeccCCcccccCchhhcCc-----Cc
Q 041497 62 SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIP----TNLSRCS-NLVKFEASNNKLAGESPAEIGNL-----LK 131 (568)
Q Consensus 62 ~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~ 131 (568)
++.++.|.+++.+|..+...++|++|++++|.+++..+ +.+..++ +|++|++++|++....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677888887777777766778999998888886555 6677777 88888888888887666666664 78
Q ss_pred CceeecccccCCCCCCcc----cCCC-CCCCeEEeccCCCCCCCCccccc-----cccCcEEeecccccccCCCCCCCCC
Q 041497 132 FQLLNIAENHLRGQLPAS----IGNL-SALQEINVNGNRLGGRIPSTRSH-----VRNLISFNVGLNQFSGMFPPINNIS 201 (568)
Q Consensus 132 L~~L~l~~~~l~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~l~~~~ 201 (568)
|++|++++|.+.+..+.. +..+ ++|++|++++|.+....+..+.. .++|++|++++|.+.+...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~------ 155 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS------ 155 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH------
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH------
Confidence 888888888877544443 3333 67777777777776444333322 2456666666665543211
Q ss_pred CccEEEeecccccccCCCcccCCCC-CcceEeecCCccccccCcc----CCCC-CCCCeEecCCCccccccc----CCcc
Q 041497 202 SLEYIFIHRNIYHGSLPLDIGVNLP-NLRFFIISGNNLTGSLQDS----LSNA-TNLQKLDINRNLFSGKVS----INFG 271 (568)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~L~~n~~~~~~~----~~~~ 271 (568)
..++..+. ..+ +|++|++++|.+++..+.. +..+ ++|++|++++|.+.+... ..+.
T Consensus 156 -------------~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 156 -------------DELIQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp -------------HHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred -------------HHHHHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 01111222 333 8999999999887665433 3345 599999999999986332 2333
Q ss_pred C-CCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhc------ccccceEEEcccCcccCC
Q 041497 272 G-LQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLAN------LSTTMTGIAFGNNQISGF 344 (568)
Q Consensus 272 ~-~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~~l~~L~l~~~~l~~~ 344 (568)
. .++|++|++++|.+...... .+...+..+++|+.|++++|.+.++.+..... ...+++.|++++|.+.+.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~--~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLE--NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHH--HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCceEEECcCCCCCcHHHH--HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3 46999999999999876543 33445678899999999999976655443221 123489999999999876
Q ss_pred CChhhh
Q 041497 345 IPDGIA 350 (568)
Q Consensus 345 ~~~~~~ 350 (568)
.+..+.
T Consensus 300 ~~~~~~ 305 (362)
T 3goz_A 300 HSIPIS 305 (362)
T ss_dssp GCHHHH
T ss_pred chHHHH
Confidence 554443
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.1e-19 Score=175.32 Aligned_cols=194 Identities=21% Similarity=0.305 Sum_probs=117.8
Q ss_pred ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCc
Q 041497 54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ 133 (568)
Q Consensus 54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 133 (568)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++ .+. +..+++|++|++++|++.. + ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence 4566777777777777663 34 56777777777777777763 333 7777777777777777763 2 3567777777
Q ss_pred eeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccc
Q 041497 134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIY 213 (568)
Q Consensus 134 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 213 (568)
+|++++|.+.+. + .+..+++|++|++++|.+.+. + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-S-PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-c-cccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence 777777777643 2 367777777777777777532 2 26666777777777776654332 44555555555555544
Q ss_pred cccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCccc
Q 041497 214 HGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFS 263 (568)
Q Consensus 214 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~ 263 (568)
.+ ++. +..+++|++|++++|.+.+.. .+..+++|+.|++++|.++
T Consensus 186 ~~-~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SD-ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CC-CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred Cc-Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 42 111 224455555555555554332 2444555555555555554
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=1.1e-21 Score=192.40 Aligned_cols=257 Identities=15% Similarity=0.203 Sum_probs=175.5
Q ss_pred CCceeeccCCcccccCCcccCCC--CCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCccccc-CchhhcCcCcCcee
Q 041497 59 FLRSINLANNSFRAEIPHEVGNL--FRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGE-SPAEIGNLLKFQLL 135 (568)
Q Consensus 59 ~L~~L~ls~~~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L 135 (568)
.++.++++++.+. +..+..+ +++++|++++|.+++..+. +..+++|++|++++|.+... ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3677787777655 3345555 6778888888777755444 45677888888888777644 56667777778888
Q ss_pred ecccccCCCCCCcccCCCCCCCeEEeccC-CCCC-CCCccccccccCcEEeeccc-ccccCCCCCCCCCCccEEEeeccc
Q 041497 136 NIAENHLRGQLPASIGNLSALQEINVNGN-RLGG-RIPSTRSHVRNLISFNVGLN-QFSGMFPPINNISSLEYIFIHRNI 212 (568)
Q Consensus 136 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~~~~l~~~~~L~~L~l~~~~ 212 (568)
++++|.+.+..+..++.+++|++|++++| .+.+ ..+..+..+++|++|++++| .+.+.
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------- 184 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------------- 184 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-------------------
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-------------------
Confidence 88777776555666777777777777777 3432 13334455555665555555 33311
Q ss_pred ccccCCCcccCCCC-CcceEeecCCc--cc-cccCccCCCCCCCCeEecCCCc-ccccccCCccCCCCCcEEECCCCCCC
Q 041497 213 YHGSLPLDIGVNLP-NLRFFIISGNN--LT-GSLQDSLSNATNLQKLDINRNL-FSGKVSINFGGLQNLSWLNLGKNNLG 287 (568)
Q Consensus 213 ~~~~~~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~l~~~~~~ 287 (568)
.++.. +..++ +|++|++++|. ++ ...+..+..+++|+.|++++|. +++..+..+..+++|++|++++|..
T Consensus 185 ---~~~~~-~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~- 259 (336)
T 2ast_B 185 ---HVQVA-VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD- 259 (336)
T ss_dssp ---HHHHH-HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT-
T ss_pred ---HHHHH-HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC-
Confidence 12222 23678 99999999994 44 2345566789999999999999 7766677788999999999999961
Q ss_pred CcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhh
Q 041497 288 TRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIAN 351 (568)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~ 351 (568)
..+. ....+..+++|+.|++++| +.. ..+......+..|+++.|.+++..|..+..
T Consensus 260 -~~~~---~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 260 -IIPE---TLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp -CCGG---GGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred -CCHH---HHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 1111 1134678999999999999 443 233333334778889999999988877765
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=8.8e-22 Score=196.84 Aligned_cols=248 Identities=21% Similarity=0.236 Sum_probs=132.7
Q ss_pred CcccCCCCCceeeccCCccccc----CCcccCCCCCCcEEeCCCCcCC---CCCCccc-------ccCCCCcEEeccCCc
Q 041497 52 PFVGNLSFLRSINLANNSFRAE----IPHEVGNLFRLQNLTLTNNYFS---GKIPTNL-------SRCSNLVKFEASNNK 117 (568)
Q Consensus 52 ~~~~~~~~L~~L~ls~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~-------~~l~~L~~L~l~~n~ 117 (568)
..+..+++|++|++++|.+... ++..+..+++|++|++++|.+. +..|..+ ..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 3455667777777777766654 2233556777777777765332 2333333 456667777777666
Q ss_pred ccc----cCchhhcCcCcCceeecccccCCCCCCcccC----CC---------CCCCeEEeccCCCCC-CCC---ccccc
Q 041497 118 LAG----ESPAEIGNLLKFQLLNIAENHLRGQLPASIG----NL---------SALQEINVNGNRLGG-RIP---STRSH 176 (568)
Q Consensus 118 ~~~----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~----~l---------~~L~~L~l~~~~~~~-~~~---~~l~~ 176 (568)
+.. .++..+..+++|++|++++|.+....+..+. .+ ++|++|++++|.+.. ..+ ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 654 2455566666666666666665422222222 22 666666666666542 222 23445
Q ss_pred cccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccc----cccCccCCCCCCC
Q 041497 177 VRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLT----GSLQDSLSNATNL 252 (568)
Q Consensus 177 l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L 252 (568)
+++|+.|++++|.+.... +....+..+ ..+++|+.|++++|.++ ...+..+..+++|
T Consensus 186 ~~~L~~L~L~~n~l~~~g------------------~~~l~~~~l-~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEG------------------IEHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp CTTCCEEECCSSCCCHHH------------------HHHHHHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred CCCcCEEECcCCCCCHhH------------------HHHHHHHHh-hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 556666666665544110 000011111 24555666666666553 2344455566666
Q ss_pred CeEecCCCccccc----ccCCc--cCCCCCcEEECCCCCCCCcCCCCchhhhcc-cCCCcccEEEeccCcccCcC
Q 041497 253 QKLDINRNLFSGK----VSINF--GGLQNLSWLNLGKNNLGTRTANDLDFITLL-TNCTKLEVLVLDSNRFGAVL 320 (568)
Q Consensus 253 ~~L~L~~n~~~~~----~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~ 320 (568)
+.|++++|.+.+. .+..+ +.+++|+.|++++|.+..... ..+...+ ..+++|+.|++++|++++..
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~--~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV--RTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH--HHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH--HHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6666666666543 12223 236667777777766654210 0122223 44677777777777776655
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=2e-19 Score=173.44 Aligned_cols=210 Identities=20% Similarity=0.339 Sum_probs=139.9
Q ss_pred eeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeeccccc
Q 041497 62 SINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENH 141 (568)
Q Consensus 62 ~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 141 (568)
.+.+..+.+.+.. ..+.+++|++|++++|.++ .++ .+..+++|++|++++|++... +. +..+++|++|++++|.
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNP 96 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCC
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCc
Confidence 3344445444322 2456788999999999887 444 588889999999999988743 33 8888899999999888
Q ss_pred CCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcc
Q 041497 142 LRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDI 221 (568)
Q Consensus 142 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 221 (568)
+.+. ..+..+++|++|++++|.+.. .+ .+..+++|+.|++++|.+.+..+ +.
T Consensus 97 l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-l~----------------------- 148 (308)
T 1h6u_A 97 LKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP-LA----------------------- 148 (308)
T ss_dssp CSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GG-----------------------
T ss_pred CCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc-cc-----------------------
Confidence 8753 468888888888888888764 32 36777777777777776654321 33
Q ss_pred cCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhccc
Q 041497 222 GVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLT 301 (568)
Q Consensus 222 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 301 (568)
.+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+....+ +.
T Consensus 149 --~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--------l~ 214 (308)
T 1h6u_A 149 --GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--------LA 214 (308)
T ss_dssp --GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--------GT
T ss_pred --CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--------cc
Confidence 45556666666665554322 5556666666666666654443 5566666666666666655431 45
Q ss_pred CCCcccEEEeccCcccCc
Q 041497 302 NCTKLEVLVLDSNRFGAV 319 (568)
Q Consensus 302 ~~~~L~~L~l~~~~~~~~ 319 (568)
.+++|+.|++++|++++.
T Consensus 215 ~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp TCTTCCEEEEEEEEEECC
T ss_pred CCCCCCEEEccCCeeecC
Confidence 667777777777766553
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=5.1e-19 Score=160.40 Aligned_cols=182 Identities=17% Similarity=0.173 Sum_probs=127.7
Q ss_pred CCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCC
Q 041497 19 INLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKI 98 (568)
Q Consensus 19 ~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 98 (568)
...|.|.++.|.. +.+...+ ..-.++|++|++++|.++...+..+.++++|++|++++|.+++..
T Consensus 4 ~C~C~~~~v~c~~------------~~l~~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 4 RCSCSGTTVECYS------------QGRTSVP---TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp TCEEETTEEECCS------------SCCSSCC---SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEECCCEEEecC------------CCccCCC---CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence 3467888888854 2222221 122357888888888887666666788888888888888888666
Q ss_pred CcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccc
Q 041497 99 PTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVR 178 (568)
Q Consensus 99 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 178 (568)
+..|..+++|++|++++|+++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 66677888888888888888765556677888888888888888766666677888888888888887755555567777
Q ss_pred cCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcc
Q 041497 179 NLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDI 221 (568)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 221 (568)
+|+.|++++|.+.. .++.|+.|++..+.+.+.+|..+
T Consensus 149 ~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp TCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred CccEEEecCCCeec------CCCCHHHHHHHHHhCCceeeccC
Confidence 78888877775543 24455556555555555555443
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=2.4e-21 Score=193.75 Aligned_cols=252 Identities=17% Similarity=0.190 Sum_probs=145.2
Q ss_pred CCcccCCCCCCcEEeCCCCcCCCCCC----cccccCCCCcEEeccCCcc---cccCchhh-------cCcCcCceeeccc
Q 041497 74 IPHEVGNLFRLQNLTLTNNYFSGKIP----TNLSRCSNLVKFEASNNKL---AGESPAEI-------GNLLKFQLLNIAE 139 (568)
Q Consensus 74 ~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~---~~~~~~~~-------~~l~~L~~L~l~~ 139 (568)
++..+..+++|++|++++|.++...+ ..+..+++|++|++++|.+ .+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 45555666666677776666653322 2244566666666666432 22333333 4455555555555
Q ss_pred ccCCC----CCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCC---------CCccEE
Q 041497 140 NHLRG----QLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNI---------SSLEYI 206 (568)
Q Consensus 140 ~~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~---------~~L~~L 206 (568)
|.+.. .++..+..+++|++|++++|.+....+..+.. .+..+ ++|+.|
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~-------------------~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-------------------ALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH-------------------HHHHHHHHHHHHTCCCCCEE
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH-------------------HHHHHhhhhhcccCCCCcEE
Confidence 55543 13334444555555555555443211111111 11111 455555
Q ss_pred Eeecccccc-cCCC--cccCCCCCcceEeecCCcccc-----ccCccCCCCCCCCeEecCCCccc----ccccCCccCCC
Q 041497 207 FIHRNIYHG-SLPL--DIGVNLPNLRFFIISGNNLTG-----SLQDSLSNATNLQKLDINRNLFS----GKVSINFGGLQ 274 (568)
Q Consensus 207 ~l~~~~~~~-~~~~--~~~~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~L~~n~~~----~~~~~~~~~~~ 274 (568)
++++|.+.. .++. ..+..+++|++|++++|.+.. ..+..+..+++|+.|+|++|.++ ...+..+..++
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 555555441 2221 122256788888888887763 23336778888999999999885 34455677888
Q ss_pred CCcEEECCCCCCCCcCCCCchhhhcc--cCCCcccEEEeccCcccC----cCchhhhcccccceEEEcccCcccCCCC
Q 041497 275 NLSWLNLGKNNLGTRTANDLDFITLL--TNCTKLEVLVLDSNRFGA----VLPFSLANLSTTMTGIAFGNNQISGFIP 346 (568)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~l~~L~l~~~~l~~~~~ 346 (568)
+|++|++++|.+...... .+...+ ..+++|+.|++++|.+++ ..+..+....++++.|++++|.+++..+
T Consensus 245 ~L~~L~L~~n~i~~~~~~--~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAA--AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCEEECTTCCCCHHHHH--HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CcCEEECCCCCCchhhHH--HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 899999998887654221 223344 347888899998888877 2444442322448888888888876653
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.5e-18 Score=158.32 Aligned_cols=157 Identities=22% Similarity=0.249 Sum_probs=113.2
Q ss_pred eeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCC
Q 041497 375 MLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDN 454 (568)
Q Consensus 375 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n 454 (568)
.++++++.++ .+|..+. +.++.|++++|.+++..+..+..+++| +.|+|++|
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L-------------------------~~L~Ls~N 66 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKL-------------------------RRIDLSNN 66 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTC-------------------------CEEECCSS
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCC-------------------------CEEECCCC
Confidence 4455555544 2232222 345555555555554444445555555 55556666
Q ss_pred cccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCc
Q 041497 455 LLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 533 (568)
Q Consensus 455 ~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 533 (568)
.+++..+..|..+++|++|++++|+++...+..+. +++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+.
T Consensus 67 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 67 QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp CCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 66656677888888999999999988855555555 88999999999999888888888899999999999999888788
Q ss_pred cccccccCCeeecccCcccccCCCCc
Q 041497 534 YLENLSFLSFLNLSYNHFESKSLFVW 559 (568)
Q Consensus 534 ~~~~l~~L~~L~l~~n~i~~~~~~~~ 559 (568)
.|..+++|+.|++++|++.|.|+..|
T Consensus 147 ~~~~l~~L~~L~L~~N~~~c~c~l~~ 172 (220)
T 2v9t_B 147 TFSPLRAIQTMHLAQNPFICDCHLKW 172 (220)
T ss_dssp TTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred HHhCCCCCCEEEeCCCCcCCCCccHH
Confidence 88888999999999999998887654
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=6.6e-18 Score=166.05 Aligned_cols=220 Identities=16% Similarity=0.094 Sum_probs=122.0
Q ss_pred CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCC-cccccCCCCcE-EeccCCcccccCchhhcCcCcCcee
Q 041497 58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIP-TNLSRCSNLVK-FEASNNKLAGESPAEIGNLLKFQLL 135 (568)
Q Consensus 58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l~~n~~~~~~~~~~~~l~~L~~L 135 (568)
+++++|++++|.++...+.+|+++++|++|++++|.+.+.++ ..|.+++++++ +.+..|++....+..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 467788888888775444567788888888888887654333 45677777664 4455567776666677777777777
Q ss_pred ecccccCCCCCCcccCCCCCCCeEEeccC-CCCCCCCccccccc-cCcEEeecccccccCCCCCCCCCCccEEEeecccc
Q 041497 136 NIAENHLRGQLPASIGNLSALQEINVNGN-RLGGRIPSTRSHVR-NLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIY 213 (568)
Q Consensus 136 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 213 (568)
++++|.+....+..+....++..+++.++ .+....+..+..+. .++.|++++|.+..
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--------------------- 168 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--------------------- 168 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE---------------------
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC---------------------
Confidence 77777776555455555566666666543 33322222333332 34555555555543
Q ss_pred cccCCCcccCCCCCcceEeecC-CccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCC-CCCcCC
Q 041497 214 HGSLPLDIGVNLPNLRFFIISG-NNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNN-LGTRTA 291 (568)
Q Consensus 214 ~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~ 291 (568)
++..++ ...+|+++++.+ |.++.+.+..|..+++|+.|++++|+++.+.+..+ .+|+.|.+.++. +...+
T Consensus 169 ---i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP- 240 (350)
T 4ay9_X 169 ---IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP- 240 (350)
T ss_dssp ---ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-
T ss_pred ---CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-
Confidence 333333 334455555543 34443333445555566666666665554443332 333444433332 22221
Q ss_pred CCchhhhcccCCCcccEEEecc
Q 041497 292 NDLDFITLLTNCTKLEVLVLDS 313 (568)
Q Consensus 292 ~~~~~~~~l~~~~~L~~L~l~~ 313 (568)
.+..+++|+.+++.+
T Consensus 241 -------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 -------TLEKLVALMEASLTY 255 (350)
T ss_dssp -------CTTTCCSCCEEECSC
T ss_pred -------CchhCcChhhCcCCC
Confidence 144556666666643
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=2.1e-18 Score=169.53 Aligned_cols=240 Identities=17% Similarity=0.159 Sum_probs=155.7
Q ss_pred eeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCc-hhhcCcCcCce-eecccc
Q 041497 63 INLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESP-AEIGNLLKFQL-LNIAEN 140 (568)
Q Consensus 63 L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l~~~ 140 (568)
++.++++++ .+|..+ .+++++|++++|+++.+.++.|.++++|++|++++|++.+.++ ..|.+++++++ +.+..|
T Consensus 14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 344444444 455544 2567888888888875555667888888888888887654443 45667777664 445556
Q ss_pred cCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCc
Q 041497 141 HLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLD 220 (568)
Q Consensus 141 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 220 (568)
++....+..|..+++|++|++++|.+....+..+....++..+++ ..+.....++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l-----------------------~~~~~i~~l~~~ 147 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI-----------------------QDNINIHTIERN 147 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE-----------------------ESCTTCCEECTT
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh-----------------------cccccccccccc
Confidence 676555666777777777777777765433333333344444444 332222244444
Q ss_pred ccCCC-CCcceEeecCCccccccCccCCCCCCCCeEecCC-CcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhh
Q 041497 221 IGVNL-PNLRFFIISGNNLTGSLQDSLSNATNLQKLDINR-NLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFIT 298 (568)
Q Consensus 221 ~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 298 (568)
.+... ..++.|++++|+++.+.+..+ ...+|+++++.+ |.+..+.+..|+.+++|++|++++|.++.++..
T Consensus 148 ~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~------ 220 (350)
T 4ay9_X 148 SFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY------ 220 (350)
T ss_dssp SSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS------
T ss_pred chhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh------
Confidence 44344 468899999999996655555 456899999985 667777777889999999999999999988754
Q ss_pred cccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCc
Q 041497 299 LLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQ 340 (568)
Q Consensus 299 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 340 (568)
.+.+|+.|.+.++......| .+..+ .+|+.+++.++.
T Consensus 221 ---~~~~L~~L~~l~~~~l~~lP-~l~~l-~~L~~l~l~~~~ 257 (350)
T 4ay9_X 221 ---GLENLKKLRARSTYNLKKLP-TLEKL-VALMEASLTYPS 257 (350)
T ss_dssp ---SCTTCCEEECTTCTTCCCCC-CTTTC-CSCCEEECSCHH
T ss_pred ---hhccchHhhhccCCCcCcCC-CchhC-cChhhCcCCCCc
Confidence 34567777765554333333 23344 348888887653
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=4.3e-19 Score=175.24 Aligned_cols=182 Identities=20% Similarity=0.113 Sum_probs=139.5
Q ss_pred CeeECccCccccccCccccCcccccccccccccccCCCCCCcc-CCCCceEEEcccCCCCCCCCCchhHHhhhceEEEcc
Q 041497 374 QMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIG-NCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLS 452 (568)
Q Consensus 374 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls 452 (568)
+.++++++.++. +|..+. ..++.|++++|.+++..+..+. ++++|+.|++++|.+.+..+..+..+..+ +.|+|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL-RYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECC
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC-CEEECC
Confidence 456666666553 333332 3466677777777666666665 67777777777777766666666666666 778888
Q ss_pred CCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccC---cCCCCCCEEeCCCCccc
Q 041497 453 DNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTL---SSLKSITELDLSRNNLS 528 (568)
Q Consensus 453 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~ 528 (568)
+|.+++..+..|..+++|++|+|++|+++...+..+. +++|+.|+|++|.++...+..| ..+++|+.||+++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 8888877777899999999999999999977788887 9999999999999996655556 57999999999999999
Q ss_pred cCcCcccccccc--CCeeecccCcccccCCCCc
Q 041497 529 GHIPQYLENLSF--LSFLNLSYNHFESKSLFVW 559 (568)
Q Consensus 529 ~~~~~~~~~l~~--L~~L~l~~n~i~~~~~~~~ 559 (568)
...+..+..++. ++.|++++|++.|.|...|
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~ 209 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQ 209 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEECCHHHHH
T ss_pred ccCHHHhhhccHhhcceEEecCCCccCCcCcHH
Confidence 877788888887 4899999999999998654
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=157.76 Aligned_cols=138 Identities=20% Similarity=0.228 Sum_probs=105.2
Q ss_pred ceEEEcccCCCCCCCCC-chhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeec
Q 041497 421 LILLTTRKNKPSGTMPR-QLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCM 498 (568)
Q Consensus 421 L~~L~l~~~~~~~~~~~-~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~L 498 (568)
+++|++++|.+.+..+. .+..+..+ +.|++++|.+++..+..|..+++|++|++++|++++..+..+. +++|++|+|
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L-~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQL-RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCC-CEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34555555555444322 23344444 6666667777666666788888999999999988866666676 889999999
Q ss_pred ccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCc
Q 041497 499 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVW 559 (568)
Q Consensus 499 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 559 (568)
++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|+.|++++|++.|.|+..|
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~ 173 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAW 173 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHH
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHH
Confidence 9999888878888888999999999999988888888889999999999999999888654
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=7.8e-18 Score=152.56 Aligned_cols=177 Identities=19% Similarity=0.289 Sum_probs=127.8
Q ss_pred ceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccc
Q 041497 61 RSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAEN 140 (568)
Q Consensus 61 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 140 (568)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++....+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46777777766 455544 468999999999998666667888999999999999988666666788899999999999
Q ss_pred cCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-CCCCCCCccEEEeecccccccCCC
Q 041497 141 HLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIYHGSLPL 219 (568)
Q Consensus 141 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~ 219 (568)
.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 8886666667888899999999888876555567778888888888887775544 35556666666666554331
Q ss_pred cccCCCCCcceEeecCCccccccCccCCC
Q 041497 220 DIGVNLPNLRFFIISGNNLTGSLQDSLSN 248 (568)
Q Consensus 220 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 248 (568)
.++.|+.|++..|.+++..|.+++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCcc
Confidence 3445555555555555555554443
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=5.6e-18 Score=155.67 Aligned_cols=165 Identities=19% Similarity=0.193 Sum_probs=114.5
Q ss_pred CCCCCCCCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCC
Q 041497 13 SSWNNSINLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNN 92 (568)
Q Consensus 13 ~~~~~~~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n 92 (568)
..|..+...|.|.++.|... .+...+ ..+ .++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~------------~l~~ip-~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSK------------RHASVP-AGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74 (229)
T ss_dssp -CCCCTTCEEETTEEECTTS------------CCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCCEEeCCEeEccCC------------CcCccC-CCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence 35556778999999999642 222211 111 266777777777777666777777777777777777
Q ss_pred cCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCc
Q 041497 93 YFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPS 172 (568)
Q Consensus 93 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 172 (568)
.++...+..|..+++|++|++++|+++...+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+.
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 777555556677777777777777777555555677777777777777777 5666777777777777777777755455
Q ss_pred cccccccCcEEeecccccccC
Q 041497 173 TRSHVRNLISFNVGLNQFSGM 193 (568)
Q Consensus 173 ~l~~l~~L~~L~l~~~~~~~~ 193 (568)
.+..+++|+.|++++|.+...
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTT
T ss_pred HHhCCCCCCEEEeeCCCccCC
Confidence 677777777777777776643
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=2.8e-18 Score=157.72 Aligned_cols=144 Identities=22% Similarity=0.228 Sum_probs=102.9
Q ss_pred CCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceee
Q 041497 419 KNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLC 497 (568)
Q Consensus 419 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~ 497 (568)
++|++|++++|.+.+..+..+..+..+ +.|++++|.++...+..|..+++|++|++++|+++...+..+. +++|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINL-KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCC-cEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 444444444444444444444444444 5556666666655556678888888888888888866566665 88888888
Q ss_pred cccccccccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCCCcccccc
Q 041497 498 MQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDE 564 (568)
Q Consensus 498 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ 564 (568)
|++|.++ .+|..+..+++|+.|++++|.++...+..|..+++|+.|++++|++.|.|+....+..|
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~ 184 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNW 184 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHH
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHH
Confidence 8888888 66777888888899999988888777777888888899999999988888744333333
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=7.4e-19 Score=181.69 Aligned_cols=213 Identities=17% Similarity=0.243 Sum_probs=146.9
Q ss_pred CCCCCCCCCCCc-----eeeec-eeCCCCCeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCC
Q 041497 11 VTSSWNNSINLC-----QWTGV-TCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRL 84 (568)
Q Consensus 11 ~~~~~~~~~~~c-----~~~~~-~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L 84 (568)
.+..|.....+| .|.++ .|. ..+++.|++++|.+.+.+ ..+ +++|++|++++|.++ .+| ..+++|
T Consensus 32 ~l~~W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~lp-~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L 102 (571)
T 3cvr_A 32 AWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLP-DNL--PPQITVLEITQNALI-SLP---ELPASL 102 (571)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSCCC-SCC--CTTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred HHHHHhccCCccccccchhhhccccc--cCCccEEEeCCCCCCccC-HhH--cCCCCEEECcCCCCc-ccc---cccCCC
Confidence 455787777788 57777 674 257899999999998843 333 378999999999988 567 457899
Q ss_pred cEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccC
Q 041497 85 QNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGN 164 (568)
Q Consensus 85 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 164 (568)
++|++++|.+++ +|. +.. +|++|++++|++++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|
T Consensus 103 ~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 103 EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCC
Confidence 999999999985 666 554 89999999999885 555 67899999999998885 444 5688899999998
Q ss_pred CCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCc
Q 041497 165 RLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQD 244 (568)
Q Consensus 165 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 244 (568)
.+.+ +|. +. ++|+.|++++|.+..... +.. +| ....+.|+.|++++|.++. +|.
T Consensus 171 ~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L------------------~~~~~~L~~L~Ls~N~l~~-lp~ 224 (571)
T 3cvr_A 171 QLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RN------------------HHSEETEIFFRCRENRITH-IPE 224 (571)
T ss_dssp CCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------------------------CCEEEECCSSCCCC-CCG
T ss_pred CCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hh------------------hcccccceEEecCCCccee-cCH
Confidence 8874 665 54 778888888887764332 221 23 0011223666666666553 344
Q ss_pred cCCCCCCCCeEecCCCcccccccCCc
Q 041497 245 SLSNATNLQKLDINRNLFSGKVSINF 270 (568)
Q Consensus 245 ~l~~~~~L~~L~L~~n~~~~~~~~~~ 270 (568)
.+..+++|+.|++++|.+++..|..+
T Consensus 225 ~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 225 NILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp GGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred HHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 44456666666666666655544443
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=4.5e-18 Score=162.41 Aligned_cols=172 Identities=27% Similarity=0.312 Sum_probs=128.3
Q ss_pred ccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEE
Q 041497 370 LKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLL 449 (568)
Q Consensus 370 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l 449 (568)
+++|+.|++++|.+... ..+..+++|+.|++++|++++..+ +..+++|++|++++|.+.+. ..+..+..+ +.|
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L-~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKL-KSL 117 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTC-CEE
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCC-CEE
Confidence 67778888888877643 347778888888888888876544 77788888888888877652 235555566 888
Q ss_pred EccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeecccccccccCCccCcCCCCCCEEeCCCCcccc
Q 041497 450 NLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 529 (568)
Q Consensus 450 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 529 (568)
++++|.+++. ..+..+++|++|++++|++++ ++....+++|+.|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-chhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 8888888753 467788888888888888874 3332338888888888888886544 7888888888888888886
Q ss_pred CcCccccccccCCeeecccCcccccC
Q 041497 530 HIPQYLENLSFLSFLNLSYNHFESKS 555 (568)
Q Consensus 530 ~~~~~~~~l~~L~~L~l~~n~i~~~~ 555 (568)
. + .+..+++|+.|++++|++....
T Consensus 193 l-~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 193 L-R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp C-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred C-h-hhccCCCCCEEECcCCcccCCc
Confidence 4 3 3788888888888888887643
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.3e-17 Score=152.14 Aligned_cols=135 Identities=20% Similarity=0.263 Sum_probs=105.1
Q ss_pred CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeec
Q 041497 58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI 137 (568)
Q Consensus 58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 137 (568)
+++++|++++|.+....+..|..+++|++|++++|.+++..|..|.++++|++|++++|+++...+..|..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 57788888888877666667778888888888888887666777888888888888888887555555677888888888
Q ss_pred ccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccccc
Q 041497 138 AENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSG 192 (568)
Q Consensus 138 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (568)
++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8888887777778888888888888888876666667778888888888887764
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=3.6e-17 Score=149.14 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=130.5
Q ss_pred EEeccCCccccccCCcccCCCCCceeeccCCcccccCC-cccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCC
Q 041497 38 GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIP-HEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNN 116 (568)
Q Consensus 38 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 116 (568)
.++++++.+...+. .+ ...+++|++++|.++...+ ..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 15 ~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 67777787776433 33 3456899999999986644 45789999999999999998777778999999999999999
Q ss_pred cccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccC
Q 041497 117 KLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGM 193 (568)
Q Consensus 117 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (568)
++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+...
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99877777899999999999999999988888899999999999999999887788999999999999999988754
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=3.4e-17 Score=171.30 Aligned_cols=182 Identities=23% Similarity=0.298 Sum_probs=83.8
Q ss_pred EEcccCcccCCCChhhhhhccccccCccccccchh----hccCCCeeECccCccccccCccccCcccccccccccccccC
Q 041497 334 IAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT----ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLG 409 (568)
Q Consensus 334 L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 409 (568)
+.+..+.+.+..+ +..+++|+.|++++|.+... .+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC
Confidence 3444444443322 34555555555555554321 14555555555555543322 4555555555555555543
Q ss_pred CCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc
Q 041497 410 NIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG 489 (568)
Q Consensus 410 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~ 489 (568)
. ..+..+++|+.|++++|.+.+. ..+..+..+ +.|+|++|.+++. ..+..+++|+.|+|++|++++..| ...
T Consensus 102 l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~ 173 (605)
T 1m9s_A 102 L--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAG 173 (605)
T ss_dssp C--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTT
T ss_pred C--hhhccCCCCCEEEecCCCCCCC--ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hcc
Confidence 1 2445555555555555554431 223333333 4445555544432 344444555555555554443222 111
Q ss_pred ccccceeecccccccccCCccCcCCCCCCEEeCCCCcccc
Q 041497 490 CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 529 (568)
Q Consensus 490 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 529 (568)
+++|+.|+|++|.+++. ..+..+++|+.|++++|++..
T Consensus 174 l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 44555555555544432 234444455555555554443
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=8.5e-17 Score=153.51 Aligned_cols=185 Identities=18% Similarity=0.292 Sum_probs=123.0
Q ss_pred eccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCccc
Q 041497 40 DLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLA 119 (568)
Q Consensus 40 ~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 119 (568)
.+..+.+.+.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++.
T Consensus 30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred HhcCCCccccc--chhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence 34444444322 24566777777777776653 33 36677777777777777764332 677777777777777775
Q ss_pred ccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCC
Q 041497 120 GESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINN 199 (568)
Q Consensus 120 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~ 199 (568)
. ...+..+++|++|++++|.+.+. ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+..+ +..
T Consensus 104 ~--~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~ 176 (291)
T 1h6t_A 104 D--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAG 176 (291)
T ss_dssp C--GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTT
T ss_pred C--ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcC
Confidence 3 23466777777777777777643 4566777777777777777643 566777777777777777766544 667
Q ss_pred CCCccEEEeecccccccCCCcccCCCCCcceEeecCCcccc
Q 041497 200 ISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTG 240 (568)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 240 (568)
+++|+.|++++|.+.+ ++. ...+++|+.|++++|.+..
T Consensus 177 l~~L~~L~L~~N~i~~-l~~--l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 177 LTKLQNLYLSKNHISD-LRA--LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCCEEECCSSCCCB-CGG--GTTCTTCSEEEEEEEEEEC
T ss_pred CCccCEEECCCCcCCC-Chh--hccCCCCCEEECcCCcccC
Confidence 7777777777777663 332 3367788888888887764
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=2.9e-17 Score=169.80 Aligned_cols=185 Identities=23% Similarity=0.350 Sum_probs=90.7
Q ss_pred cceEEEcccCcccCCCChhhhhhccccccCccccccchh--hccCCCeeECccCccccccCccccCcccccccccccccc
Q 041497 330 TMTGIAFGNNQISGFIPDGIANLVNLNALGVEFNQLAVT--ILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDL 407 (568)
Q Consensus 330 ~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 407 (568)
+++.|++++|.+++ +|..+ .++|+.|++++|.+... .+++|+.|++++|.+++ ++. +.. +|+.|++++|.+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLPELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcC
Confidence 47788888888776 34333 24555555555554321 14555555555555554 333 332 555555555555
Q ss_pred cCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCc
Q 041497 408 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTT 487 (568)
Q Consensus 408 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~ 487 (568)
++ +|. .+++|+.|++++|.+.+ +|. .+..+ +.|++++|.+++ +|. +. ++|+.|++++|.++ .+|.
T Consensus 133 ~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 133 TM-LPE---LPALLEYINADNNQLTM-LPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred CC-CCC---cCccccEEeCCCCccCc-CCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-
Confidence 44 222 34555555555555543 222 11222 555555555553 332 33 45555555555554 3443
Q ss_pred cccccc-------ceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCcccccc
Q 041497 488 LGCTSL-------EYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENL 538 (568)
Q Consensus 488 ~~~~~L-------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 538 (568)
+. .+| +.|+|++|.++ .+|..+..+++|+.|++++|++++.+|..+..+
T Consensus 198 ~~-~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 VP-VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC---------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HH-HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 22 144 55555555555 344444445555555555555555444444443
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=3.2e-17 Score=161.78 Aligned_cols=154 Identities=16% Similarity=0.243 Sum_probs=87.0
Q ss_pred CCceeeccCCcccccCCcccC-CCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeec
Q 041497 59 FLRSINLANNSFRAEIPHEVG-NLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI 137 (568)
Q Consensus 59 ~L~~L~ls~~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 137 (568)
.+++|++++|.++...+..+. ++++|++|++++|.++...+..|..+++|++|++++|++....+..|..+++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 355666666666554444454 5666666666666666555555666666666666666665554555566666666666
Q ss_pred ccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCcc-c---cccccCcEEeecccccccCCC-CCCCCCC--ccEEEeec
Q 041497 138 AENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST-R---SHVRNLISFNVGLNQFSGMFP-PINNISS--LEYIFIHR 210 (568)
Q Consensus 138 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l---~~l~~L~~L~l~~~~~~~~~~-~l~~~~~--L~~L~l~~ 210 (568)
++|.+.+..+..|..+++|++|++++|.+.. +|.. + ..+++|+.|++++|.+..... .+..++. ++.|++++
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 6666655555556666666666666666653 3332 2 345666666666666554433 3444444 35566665
Q ss_pred ccc
Q 041497 211 NIY 213 (568)
Q Consensus 211 ~~~ 213 (568)
|.+
T Consensus 199 N~~ 201 (361)
T 2xot_A 199 NPL 201 (361)
T ss_dssp SCE
T ss_pred CCc
Confidence 554
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=5.7e-17 Score=145.31 Aligned_cols=149 Identities=12% Similarity=0.147 Sum_probs=77.1
Q ss_pred CeEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEec
Q 041497 34 QRVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEA 113 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 113 (568)
++++.|++++|.+.... .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 44555555555555322 3555555555555555443 2234555555555555555555444555555555555555
Q ss_pred cCCcccccCchhhcCcCcCceeeccccc-CCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccc
Q 041497 114 SNNKLAGESPAEIGNLLKFQLLNIAENH-LRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF 190 (568)
Q Consensus 114 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 190 (568)
++|++....+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+.+ .+ .+..+++|+.|++++|++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 5555554445555555555555555555 33 232 35555555555555555542 22 445555555555555544
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=4.8e-17 Score=170.12 Aligned_cols=163 Identities=18% Similarity=0.310 Sum_probs=92.8
Q ss_pred EeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcc
Q 041497 39 LDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKL 118 (568)
Q Consensus 39 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 118 (568)
+++..+.+.+.. .+..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+
T Consensus 26 l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 444444444432 24566667777777766652 33 46666777777777776663332 66667777777777666
Q ss_pred cccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCC
Q 041497 119 AGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPIN 198 (568)
Q Consensus 119 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~ 198 (568)
.. + ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +.
T Consensus 100 ~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~ 172 (605)
T 1m9s_A 100 KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LA 172 (605)
T ss_dssp CC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GT
T ss_pred CC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hc
Confidence 53 2 2566666666666666666532 3456666666666666666532 445555666666666555554333 44
Q ss_pred CCCCccEEEeeccccc
Q 041497 199 NISSLEYIFIHRNIYH 214 (568)
Q Consensus 199 ~~~~L~~L~l~~~~~~ 214 (568)
.+++|+.|++++|.+.
T Consensus 173 ~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHIS 188 (605)
T ss_dssp TCTTCCEEECCSSCCC
T ss_pred cCCCCCEEECcCCCCC
Confidence 4444444444444443
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=6.8e-17 Score=144.81 Aligned_cols=153 Identities=17% Similarity=0.264 Sum_probs=102.6
Q ss_pred ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCc
Q 041497 54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ 133 (568)
Q Consensus 54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 133 (568)
...+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++....+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 356777888888887776 445 5777778888888877665 234677777888888888777765666777777777
Q ss_pred eeecccccCCCCCCcccCCCCCCCeEEeccCC-CCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeeccc
Q 041497 134 LLNIAENHLRGQLPASIGNLSALQEINVNGNR-LGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNI 212 (568)
Q Consensus 134 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 212 (568)
+|++++|.+.+..+..++.+++|++|++++|. +. .++ .+..+++|+.|++++|.+.+.. .+..+++|+.|++++|.
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 77777777776566677777777777777776 43 333 5666777777777777665432 44444445555444444
Q ss_pred c
Q 041497 213 Y 213 (568)
Q Consensus 213 ~ 213 (568)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 3
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.3e-16 Score=142.10 Aligned_cols=112 Identities=26% Similarity=0.372 Sum_probs=76.0
Q ss_pred eEEEccCCcccccCch-hhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCC
Q 041497 447 VLLNLSDNLLSGHFPA-EVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSR 524 (568)
Q Consensus 447 ~~l~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 524 (568)
+.|++++|.+++..+. .+..+++|++|++++|++++..|..+. +++|+.|+|++|++++..+..|..+++|++|++++
T Consensus 32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 5556666666544432 366677777777777777666566665 67777777777777766666677777777777777
Q ss_pred CccccCcCccccccccCCeeecccCcccccCCCC
Q 041497 525 NNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFV 558 (568)
Q Consensus 525 n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 558 (568)
|.+++..|..|..+++|+.|++++|++.|.|+..
T Consensus 112 N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 112 NQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp SCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred CcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 7777666667777777777777777777777644
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=5.1e-17 Score=152.51 Aligned_cols=168 Identities=21% Similarity=0.179 Sum_probs=127.3
Q ss_pred hhccccccCccccccch----hhccCCCeeECccCccccccCccccCcccccccccccccccCCCCCCccCCCCceEEEc
Q 041497 351 NLVNLNALGVEFNQLAV----TILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTT 426 (568)
Q Consensus 351 ~~~~L~~l~l~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 426 (568)
.+.++..++++.+.+.. ..+++|++|++++|.++. ++ .+..+++|+.|++++|++++..+ +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 45667777888777653 338899999999998874 33 68889999999999999886554 888999999999
Q ss_pred ccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCcccccccceeeccccccccc
Q 041497 427 RKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLGCTSLEYLCMQDNSFTGS 506 (568)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~ 506 (568)
++|++.+..+... ..+ +.|++++|++++. ..+..+++|++|++++|++++ ++....+++|+.|++++|.+++.
T Consensus 93 ~~N~l~~l~~~~~---~~L-~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNLNGIPS---ACL-SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IVMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCCTTCCC---SSC-CEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CGGGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCcCcccc---Ccc-cEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-ChHHccCCCCCEEECCCCcCcch
Confidence 9998876432222 444 8888888888753 357888888888888888874 44322388888888888888755
Q ss_pred CCccCcCCCCCCEEeCCCCccccCc
Q 041497 507 IPSTLSSLKSITELDLSRNNLSGHI 531 (568)
Q Consensus 507 ~~~~~~~l~~L~~L~l~~n~l~~~~ 531 (568)
..+..+++|+.|++++|++....
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECCC
T ss_pred --HHhccCCCCCEEeCCCCcccCCc
Confidence 56778888888888888887553
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=9.1e-16 Score=143.96 Aligned_cols=166 Identities=19% Similarity=0.267 Sum_probs=98.0
Q ss_pred eEEEEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEecc
Q 041497 35 RVIGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEAS 114 (568)
Q Consensus 35 ~i~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 114 (568)
.++.++++.+.+.+.. .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444556666665543 4566677777777777665 334 56666777777777776663332 6666777777777
Q ss_pred CCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCC
Q 041497 115 NNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMF 194 (568)
Q Consensus 115 ~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 194 (568)
+|++++ ++. +.. ++|++|++++|.+.+. ..+..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+.+.
T Consensus 94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-I-VMLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-C-GGGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-C-hHHccCCCCCEEECCCCcCcch-
Confidence 776653 222 222 6677777777666542 346666667777776666653 2 2456666666666666666544
Q ss_pred CCCCCCCCccEEEeeccccc
Q 041497 195 PPINNISSLEYIFIHRNIYH 214 (568)
Q Consensus 195 ~~l~~~~~L~~L~l~~~~~~ 214 (568)
..+..+++|+.|++++|.+.
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCccc
Confidence 34444555555555554443
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=9.7e-16 Score=136.40 Aligned_cols=112 Identities=28% Similarity=0.329 Sum_probs=99.4
Q ss_pred eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497 447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525 (568)
Q Consensus 447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 525 (568)
+.|++++|.++ .+|..|..+++|++|++++|.+++..+..|. +++|+.|+|++|.++...+..|..+++|+.|++++|
T Consensus 34 ~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence 77788888887 5667899999999999999999977777777 999999999999999888888999999999999999
Q ss_pred ccccCcCccccccccCCeeecccCcccccCCCCc
Q 041497 526 NLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVW 559 (568)
Q Consensus 526 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 559 (568)
.++...+..|..+++|+.|++++|++.|.|+..|
T Consensus 113 ~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 113 DISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred CCCeeChhhhhcCccccEEEeCCCCeecCCcCHH
Confidence 9998777789999999999999999999998654
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.9e-16 Score=154.30 Aligned_cols=261 Identities=13% Similarity=0.085 Sum_probs=155.7
Q ss_pred CeEEEEeccCCccccccCCcccC-CCCCceeeccCCccc--ccCCcccCCCCCCcEEeCCCCcCCCCCCccccc------
Q 041497 34 QRVIGLDLRHQSIGGFLSPFVGN-LSFLRSINLANNSFR--AEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSR------ 104 (568)
Q Consensus 34 ~~i~~L~l~~~~i~~~~~~~~~~-~~~L~~L~ls~~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------ 104 (568)
..+++|+++++ +.......+.. +++|++||+++|.+. ..... .++.++.+.+..+. +...+|.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhcccccccc
Confidence 45667777654 22111122333 677888888887766 11111 11112333333332 22334445
Q ss_pred --CCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCC----CCCCCCccccccc
Q 041497 105 --CSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNR----LGGRIPSTRSHVR 178 (568)
Q Consensus 105 --l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~l~~l~ 178 (568)
|++|+.|++.+ .++.+.+.+|.+|++|+.|++.+|.+....+..|..+.++..+...... .......++..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 66666666655 5554445556666666666666665554445555555555444443311 0101112222222
Q ss_pred --------------------------cCcEEeecccccccCCCCC-CCCCCccEEEeecccccccCCCcccCCCCCcceE
Q 041497 179 --------------------------NLISFNVGLNQFSGMFPPI-NNISSLEYIFIHRNIYHGSLPLDIGVNLPNLRFF 231 (568)
Q Consensus 179 --------------------------~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 231 (568)
++..+.+.+.-.......+ ..+++|+.+++..|.+. .++...|.++.+|+.+
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEE
Confidence 3333333332111111111 13688999999888776 7888888889999999
Q ss_pred eecCCccccccCccCCCCCCCC-eEecCCCcccccccCCccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEE
Q 041497 232 IISGNNLTGSLQDSLSNATNLQ-KLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLV 310 (568)
Q Consensus 232 ~l~~~~~~~~~~~~l~~~~~L~-~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 310 (568)
++.++ +..+...+|.++++|+ .+++.+ .+..+.+.+|.++++|+.+++..+.+..+... .|.+|++|+.++
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~------aF~~~~~L~~ly 327 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE------LFGNGVPSKLIY 327 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT------TTCTTCCCCEEE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh------hhcCCcchhhhc
Confidence 99887 7777788899999999 999988 77778888899999999999988888887765 477889998876
Q ss_pred e
Q 041497 311 L 311 (568)
Q Consensus 311 l 311 (568)
.
T Consensus 328 ~ 328 (329)
T 3sb4_A 328 K 328 (329)
T ss_dssp C
T ss_pred c
Confidence 3
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=2.2e-16 Score=153.83 Aligned_cols=286 Identities=15% Similarity=0.131 Sum_probs=182.0
Q ss_pred CCCCCceeeccCCcccccCCcccCC-CCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcC------
Q 041497 56 NLSFLRSINLANNSFRAEIPHEVGN-LFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGN------ 128 (568)
Q Consensus 56 ~~~~L~~L~ls~~~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------ 128 (568)
.+.++++|.++++ +.......+.. +++|++|+|++|++. .....-+.++.++.+.+..+.+ ...+|.+
T Consensus 23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIK-MYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVT 97 (329)
T ss_dssp HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEEC-CEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeE-EecCcccccccccccccccccc---CHHHhcccccccc
Confidence 4678999999865 22111223333 889999999999887 1111112223355566666543 3566777
Q ss_pred --cCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeeccccc----ccCCC-CCCCCC
Q 041497 129 --LLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQF----SGMFP-PINNIS 201 (568)
Q Consensus 129 --l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----~~~~~-~l~~~~ 201 (568)
+++|+.|++.+ .+..+...+|..|++|+.+++.+|.+....+.+|..+.++..+....... ..... .+..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 99999999999 88777778899999999999999988766677788877777776655322 11111 455555
Q ss_pred Ccc-EEEeecccccccCCCccc---CCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCc
Q 041497 202 SLE-YIFIHRNIYHGSLPLDIG---VNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLS 277 (568)
Q Consensus 202 ~L~-~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 277 (568)
.|+ .+.+.... .++..++ ....+++.+.+.+.-...........+++|+.+++++|.++.+...+|..+++|+
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 665 33333221 1111111 1234455555554321111111111367788888888777777777788888888
Q ss_pred EEECCCCCCCCcCCCCchhhhcccCCCccc-EEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhcccc
Q 041497 278 WLNLGKNNLGTRTANDLDFITLLTNCTKLE-VLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLN 356 (568)
Q Consensus 278 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~ 356 (568)
.+++.++ +..+... .|..|++|+ .+++.+ .++.+.+..|.++.. |+.+++..+.++.+.+.+|..+++|+
T Consensus 254 ~l~l~~n-i~~I~~~------aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~-L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQR------VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN-LRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp EEECCTT-CCEECTT------TTTTCTTCCEEEEECT-TCCEECTTTTTTCTT-EEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred EEECCcc-cceehHH------HhhCChhccEEEEEcc-cceEEchhhhhCCcc-CCEEEeCCCccCccchhhhcCCcchh
Confidence 8888776 5555543 466778887 888877 666666677777655 88888877777777777888877776
Q ss_pred ccC
Q 041497 357 ALG 359 (568)
Q Consensus 357 ~l~ 359 (568)
.++
T Consensus 325 ~ly 327 (329)
T 3sb4_A 325 LIY 327 (329)
T ss_dssp EEE
T ss_pred hhc
Confidence 654
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=1.2e-17 Score=173.69 Aligned_cols=108 Identities=26% Similarity=0.281 Sum_probs=91.1
Q ss_pred eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497 447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525 (568)
Q Consensus 447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 525 (568)
+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++ +++|+.|+|++|.+++ +| .+..+++|+.|++++|
T Consensus 444 ~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 444 RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence 778888888885 454 888889999999999888 7777777 8899999999999885 55 7888899999999999
Q ss_pred ccccCc-CccccccccCCeeecccCcccccCCCCc
Q 041497 526 NLSGHI-PQYLENLSFLSFLNLSYNHFESKSLFVW 559 (568)
Q Consensus 526 ~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 559 (568)
.+++.. |..|..+++|+.|++++|++++.+|...
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 988776 8888899999999999999988887654
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=3.9e-17 Score=169.77 Aligned_cols=121 Identities=21% Similarity=0.249 Sum_probs=100.7
Q ss_pred CceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeec
Q 041497 420 NLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCM 498 (568)
Q Consensus 420 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~L 498 (568)
.|+.|++++|.+.+ +|. +..+..+ +.|++++|.++ .+|..++.+++|+.|++++|++++ +| .++ +++|+.|+|
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLV-THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTC-CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC-CcC-ccccccC-cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 47778888887775 454 6666666 88899999988 778899999999999999999985 67 555 999999999
Q ss_pred ccccccccC-CccCcCCCCCCEEeCCCCccccCcCc---cccccccCCeeec
Q 041497 499 QDNSFTGSI-PSTLSSLKSITELDLSRNNLSGHIPQ---YLENLSFLSFLNL 546 (568)
Q Consensus 499 s~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l 546 (568)
++|.+++.. |..+..+++|+.|++++|++++.+|. .+..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999776 89999999999999999999976553 3445789998864
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=1.9e-15 Score=132.90 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=94.6
Q ss_pred eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497 447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525 (568)
Q Consensus 447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 525 (568)
+.|++++|.+++..+..+..+++|++|++++|++++..+..+. +++|+.|++++|.+++..+..|..+++|+.|++++|
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence 6777777777766666788889999999999999865556565 899999999999999777777888999999999999
Q ss_pred ccccCcCccccccccCCeeecccCcccccCCCC
Q 041497 526 NLSGHIPQYLENLSFLSFLNLSYNHFESKSLFV 558 (568)
Q Consensus 526 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 558 (568)
.+++..+..+..+++|++|++++|++.|.||..
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 143 (177)
T 2o6r_A 111 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143 (177)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred cceEeCHHHhcCCcccCEEEecCCCeeccCccH
Confidence 999777777888999999999999999998854
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=3.1e-16 Score=168.31 Aligned_cols=203 Identities=20% Similarity=0.182 Sum_probs=102.8
Q ss_pred CCCceeeeceeCCCCCeEEEEeccCCccccccCCcccCCCCCcee-----eccCCcccccCCcccCCCCCCcEEeCCCCc
Q 041497 19 INLCQWTGVTCGHRHQRVIGLDLRHQSIGGFLSPFVGNLSFLRSI-----NLANNSFRAEIPHEVGNLFRLQNLTLTNNY 93 (568)
Q Consensus 19 ~~~c~~~~~~c~~~~~~i~~L~l~~~~i~~~~~~~~~~~~~L~~L-----~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~ 93 (568)
...+.|.+..++. .+++.|+|.++.+...... +.....|+.+ +++.|.+. ..+..+..++.|++|+|++|.
T Consensus 160 ~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~-~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~ 235 (727)
T 4b8c_D 160 TPSGTATNSAVST--PLTPKIELFANGKDEANQA-LLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQ 235 (727)
T ss_dssp ------------------------------------------------------------------CCCCCCEEECTTSC
T ss_pred CccccCCCceecC--CccceEEeeCCCCCcchhh-HhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCC
Confidence 3456677776654 7788999988877764322 2222223332 23333333 456678888888888888888
Q ss_pred CCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCcc
Q 041497 94 FSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPST 173 (568)
Q Consensus 94 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 173 (568)
+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.+. .+|..++.+++|++|++++|.+. .+|..
T Consensus 236 l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~ 311 (727)
T 4b8c_D 236 IF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE 311 (727)
T ss_dssp CS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS
T ss_pred CC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh
Confidence 87 67777778888888888888888 77888888888888888888888 66888888888888888888886 67777
Q ss_pred ccccccCcEEeecccccccCCC-CCCCCC-CccEEEeecccccccCCCcccCCCCCcceEeecCC
Q 041497 174 RSHVRNLISFNVGLNQFSGMFP-PINNIS-SLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGN 236 (568)
Q Consensus 174 l~~l~~L~~L~l~~~~~~~~~~-~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 236 (568)
+..+++|+.|++++|.+.+..+ .+.... ....+++++|.+.+.+|. .|+.|+++.|
T Consensus 312 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n 369 (727)
T 4b8c_D 312 FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTD 369 (727)
T ss_dssp TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C---------
T ss_pred hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecc
Confidence 8888888888888888776544 222211 112345556655544442 3445555544
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=2.8e-15 Score=130.59 Aligned_cols=132 Identities=18% Similarity=0.171 Sum_probs=80.7
Q ss_pred CeEEEEeccCCccc-cccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEe
Q 041497 34 QRVIGLDLRHQSIG-GFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFE 112 (568)
Q Consensus 34 ~~i~~L~l~~~~i~-~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 112 (568)
+.++.|++++|.+. +..+..+..+++|++|++++|.+... ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666777766665 44455566666677777766666543 5566666666666666666644555555666666666
Q ss_pred ccCCcccccC-chhhcCcCcCceeecccccCCCCCC---cccCCCCCCCeEEeccCCCC
Q 041497 113 ASNNKLAGES-PAEIGNLLKFQLLNIAENHLRGQLP---ASIGNLSALQEINVNGNRLG 167 (568)
Q Consensus 113 l~~n~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~---~~~~~l~~L~~L~l~~~~~~ 167 (568)
+++|++++.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666665321 1456666666666666666664332 25566666666666666554
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=1.1e-13 Score=137.51 Aligned_cols=267 Identities=10% Similarity=0.074 Sum_probs=178.3
Q ss_pred cCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCce
Q 041497 55 GNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQL 134 (568)
Q Consensus 55 ~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 134 (568)
..+..++.+.+..+ ++.....+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+......+|.+|.+|+.
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 34466777777654 443455566664 6888887765 554666667664 588888875 555566677788888888
Q ss_pred eecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-CCCCCCCccEEEeecccc
Q 041497 135 LNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLEYIFIHRNIY 213 (568)
Q Consensus 135 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~ 213 (568)
+++.+|.+.......|. +.+|+.+.+..+ +......+|..+++|+.+++..+ +..... .+.. ..|+.+.+..+ +
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-V 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-C
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-c
Confidence 88887777755445555 577888887744 44445566777778888887754 332222 4555 57777777432 3
Q ss_pred cccCCCcccCCCCCcceEeecCCccc-----cccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCCCCCCC
Q 041497 214 HGSLPLDIGVNLPNLRFFIISGNNLT-----GSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGKNNLGT 288 (568)
Q Consensus 214 ~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 288 (568)
. .++...|.++++|+.+++.++.+. .+....|.+|++|+.+.+.+ .+..+...+|.++++|+.+.+..+ +..
T Consensus 260 ~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 260 T-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp C-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred c-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 3 566666667888888888776543 35566788888888888884 466677777888888888888554 444
Q ss_pred cCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcc
Q 041497 289 RTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQI 341 (568)
Q Consensus 289 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l 341 (568)
+... .|..| +|+.+++.+|....+....+.+.+..+..+.+..+.+
T Consensus 337 I~~~------aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 337 INFS------AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTT------SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EcHH------hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 4433 36677 7888888888777766666666655577777766543
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=2.7e-15 Score=130.66 Aligned_cols=135 Identities=19% Similarity=0.193 Sum_probs=104.9
Q ss_pred CCceEEEcccCCCC-CCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-cccccee
Q 041497 419 KNLILLTTRKNKPS-GTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYL 496 (568)
Q Consensus 419 ~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L 496 (568)
++|+.|++++|.+. +.++..+..+..+ +.|++++|.+++. ..+..+++|++|++++|++++.+|..+. +++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNL-EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGC-CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCC-CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45566666666554 4455555555555 6777777777654 5778899999999999999866777777 9999999
Q ss_pred ecccccccccC-CccCcCCCCCCEEeCCCCccccCcC---ccccccccCCeeecccCcccccCC
Q 041497 497 CMQDNSFTGSI-PSTLSSLKSITELDLSRNNLSGHIP---QYLENLSFLSFLNLSYNHFESKSL 556 (568)
Q Consensus 497 ~Ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~i~~~~~ 556 (568)
++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|++.....
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 99999998543 2788899999999999999997666 578899999999999998876544
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=9.6e-14 Score=138.65 Aligned_cols=226 Identities=12% Similarity=0.013 Sum_probs=121.2
Q ss_pred cccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchh
Q 041497 46 IGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAE 125 (568)
Q Consensus 46 i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 125 (568)
+......+|.++.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.+...+|.+|++|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 33344456777778888877643 55455567777788888887654 44455666777777777766643 33344555
Q ss_pred hcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-CCCCCCCcc
Q 041497 126 IGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLE 204 (568)
Q Consensus 126 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~ 204 (568)
|.++..++....... ......+|.++++|+.+.+.++.. .....++..+.+|+.+++..+ +..... .+..+..|+
T Consensus 136 F~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 136 FKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred eecccccccccCccc--cccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence 666554433332222 223345677777777777765432 233445666677777766554 221112 555555555
Q ss_pred EEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEECCC
Q 041497 205 YIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLNLGK 283 (568)
Q Consensus 205 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 283 (568)
.+.+..+... +....+ ....|+.+.+... +.......+..+..++.+.+..+... +....|..+..++.+....
T Consensus 212 ~i~~~~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 212 NMEFPNSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp BCCCCTTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred eeecCCCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence 5554433221 111111 3345555555432 22233445555566666665554332 4444455555555555443
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=1.3e-13 Score=136.93 Aligned_cols=253 Identities=11% Similarity=0.070 Sum_probs=199.7
Q ss_pred cccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchh
Q 041497 46 IGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAE 125 (568)
Q Consensus 46 i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 125 (568)
+......+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .++.+...+|.+|++|+.+++.+|++.......
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh
Confidence 444455677775 7999999877 665666678774 799999986 666577788999999999999999998666666
Q ss_pred hcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCC-CCCCCCCcc
Q 041497 126 IGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFP-PINNISSLE 204 (568)
Q Consensus 126 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~ 204 (568)
|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ +......+|.. .+|+.+.+.. .+..... .+..+++|+
T Consensus 200 F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~ 274 (401)
T 4fdw_A 200 FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELA 274 (401)
T ss_dssp TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCC
T ss_pred Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCC
Confidence 66 689999999854 66677788999999999999875 44344455666 7899999954 3444444 899999999
Q ss_pred EEEeeccccc----ccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEE
Q 041497 205 YIFIHRNIYH----GSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLN 280 (568)
Q Consensus 205 ~L~l~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 280 (568)
.+.+..+... ..++...|.++++|+.+++.+ .+..+...+|.+|++|+.+.+..+ +..+...+|..+ +|+.+.
T Consensus 275 ~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~ 351 (401)
T 4fdw_A 275 EVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVK 351 (401)
T ss_dssp EEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEE
T ss_pred EEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEE
Confidence 9999887653 247778888999999999984 477778889999999999999766 666788889999 999999
Q ss_pred CCCCCCCCcCCCCchhhhcccCCC-cccEEEeccCcc
Q 041497 281 LGKNNLGTRTANDLDFITLLTNCT-KLEVLVLDSNRF 316 (568)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~ 316 (568)
+.++........ .+..++ .++.+.+..+.+
T Consensus 352 l~~n~~~~l~~~------~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 352 VEGTTPPQVFEK------VWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECCSSCCBCCCS------SCCCSCTTCCEEEECGGGH
T ss_pred EcCCCCcccccc------cccCCCCCccEEEeCHHHH
Confidence 999988776654 355664 788998877653
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=1.5e-14 Score=128.68 Aligned_cols=129 Identities=19% Similarity=0.274 Sum_probs=89.3
Q ss_pred EEEeccCCccccccCCcccCCCCCceeeccCCcccccCCc-ccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccC
Q 041497 37 IGLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPH-EVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASN 115 (568)
Q Consensus 37 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 115 (568)
+.++++++.+...+. .+. .++++|++++|.+....+. .+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 355666666654332 222 2677788888777654443 367777777777777777766677777777777777777
Q ss_pred CcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCC
Q 041497 116 NKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGG 168 (568)
Q Consensus 116 n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 168 (568)
|++++..+..|.++++|++|++++|.+.+..|..+..+++|++|++++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 77776666667777777777777777776666677777777777777776653
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=4.9e-15 Score=126.17 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=81.4
Q ss_pred CCCceeeccCCccc-ccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceee
Q 041497 58 SFLRSINLANNSFR-AEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLN 136 (568)
Q Consensus 58 ~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 136 (568)
+++++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56666777776665 45666666677777777777766643 5566667777777777776655666666667777777
Q ss_pred cccccCCCC-CCcccCCCCCCCeEEeccCCCCCCCC---ccccccccCcEEeec
Q 041497 137 IAENHLRGQ-LPASIGNLSALQEINVNGNRLGGRIP---STRSHVRNLISFNVG 186 (568)
Q Consensus 137 l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 186 (568)
+++|.+.+. .+..++.+++|++|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777766642 22556666777777777776654333 356666677766654
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=4.1e-15 Score=126.67 Aligned_cols=129 Identities=19% Similarity=0.234 Sum_probs=113.4
Q ss_pred CCeEEEEeccCCccc-cccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEE
Q 041497 33 HQRVIGLDLRHQSIG-GFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKF 111 (568)
Q Consensus 33 ~~~i~~L~l~~~~i~-~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 111 (568)
.++++.|++++|.+. +..+..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 377999999999998 66777889999999999999999865 778999999999999999997688888889999999
Q ss_pred eccCCccccc-CchhhcCcCcCceeecccccCCCCCC---cccCCCCCCCeEEecc
Q 041497 112 EASNNKLAGE-SPAEIGNLLKFQLLNIAENHLRGQLP---ASIGNLSALQEINVNG 163 (568)
Q Consensus 112 ~l~~n~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~---~~~~~l~~L~~L~l~~ 163 (568)
++++|++++. .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999853 34788999999999999999986554 4788999999998763
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=9.8e-15 Score=127.04 Aligned_cols=116 Identities=20% Similarity=0.214 Sum_probs=93.5
Q ss_pred eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497 447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525 (568)
Q Consensus 447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 525 (568)
+.+++++|.++. +|..+ .++|++|++++|.+++..|..+. +++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 567888888874 45444 37889999999998877677776 889999999999998777777888999999999999
Q ss_pred ccccCcCccccccccCCeeecccCcccccCCCCccccccc
Q 041497 526 NLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDEI 565 (568)
Q Consensus 526 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~ 565 (568)
.+++..+..|..+++|+.|++++|++.|.|+....+..|+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l 128 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 128 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHH
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHH
Confidence 9988777788889999999999999999988554444444
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=8.2e-14 Score=123.87 Aligned_cols=126 Identities=21% Similarity=0.273 Sum_probs=81.3
Q ss_pred EEeccCCccccccCCcccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCc
Q 041497 38 GLDLRHQSIGGFLSPFVGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK 117 (568)
Q Consensus 38 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 117 (568)
.++++++.+...+. .+ .++|++|++++|.++ .+|..|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 14 ~l~~~~~~l~~ip~-~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKVLPK-GI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSSCCS-CC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCcCCC-CC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 45566666654332 22 246777777777766 556667777777777777777776666667777777777777777
Q ss_pred ccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCC
Q 041497 118 LAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLG 167 (568)
Q Consensus 118 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 167 (568)
++...+..|..+++|++|++++|.+....+..+..+++|++|++++|++.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 76655566666777777777777666544445666666666666666553
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=5.7e-13 Score=133.01 Aligned_cols=101 Identities=10% Similarity=0.031 Sum_probs=66.1
Q ss_pred hhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCcccccccc
Q 041497 462 AEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 540 (568)
Q Consensus 462 ~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 540 (568)
..|..+.+|+.+.+..+ ++.....+|. |.+|+.++|..+ ++.+...+|.++.+|+.+++..+ ++.+....|.++++
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 35667777777777655 4434455565 777888877644 66566677777788888888766 66566677788888
Q ss_pred CCeeecccCcccccCCCCccccccccC
Q 041497 541 LSFLNLSYNHFESKSLFVWPFVDEIKG 567 (568)
Q Consensus 541 L~~L~l~~n~i~~~~~~~~~~~~~~~~ 567 (568)
|+.+++..+- ......+..++.||.
T Consensus 368 L~~i~lp~~~--~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 368 LKKVELPKRL--EQYRYDFEDTTKFKW 392 (394)
T ss_dssp CCEEEEEGGG--GGGGGGBCTTCEEEE
T ss_pred CCEEEECCCC--EEhhheecCCCCCcE
Confidence 8888776541 122344555555554
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=3.7e-15 Score=159.90 Aligned_cols=192 Identities=18% Similarity=0.160 Sum_probs=117.8
Q ss_pred CCCceeeccCCcccccCCcccCCCCCCcEEeC-----CCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcC
Q 041497 58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTL-----TNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKF 132 (568)
Q Consensus 58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l-----~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 132 (568)
++++.|++.++.+.. .+..+.....|..+.+ ..|.+. ..++.+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 568889998887764 4444433334443333 334444 56778899999999999999998 677778899999
Q ss_pred ceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCCccEEEeeccc
Q 041497 133 QLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISSLEYIFIHRNI 212 (568)
Q Consensus 133 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 212 (568)
++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+..+++|+.|++++|.+......+..+++|+.|++++|.
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 99999999999 78899999999999999999998 78999999999999999999998665589999999999999999
Q ss_pred ccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCC
Q 041497 213 YHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRN 260 (568)
Q Consensus 213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n 260 (568)
+.+.++..+.........+++++|.+.+..|. .|+.|+++.|
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 98766655532112233477888888765554 4566667766
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=2.7e-14 Score=124.60 Aligned_cols=115 Identities=21% Similarity=0.265 Sum_probs=87.6
Q ss_pred eEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497 447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525 (568)
Q Consensus 447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 525 (568)
+.+++++++++ .+|..+. ++|++|++++|++++..|..+. +++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 55677777776 4454443 7888888888888866677776 888888888888888666666788888888888888
Q ss_pred ccccCcCccccccccCCeeecccCcccccCCCCcccccc
Q 041497 526 NLSGHIPQYLENLSFLSFLNLSYNHFESKSLFVWPFVDE 564 (568)
Q Consensus 526 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ 564 (568)
.++...+..|..+++|+.|++++|++.|.|+....+..|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~ 130 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNW 130 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHH
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHH
Confidence 888776667888888888888888888888754333333
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=2.3e-13 Score=119.50 Aligned_cols=111 Identities=19% Similarity=0.217 Sum_probs=90.1
Q ss_pred CCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeec
Q 041497 58 SFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNI 137 (568)
Q Consensus 58 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 137 (568)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 67889999998888666667788889999999999888666666788889999999988888666666788888888888
Q ss_pred ccccCCCCCCcccCCCCCCCeEEeccCCCCC
Q 041497 138 AENHLRGQLPASIGNLSALQEINVNGNRLGG 168 (568)
Q Consensus 138 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 168 (568)
++|.+.+..+..+..+++|++|++++|++..
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 8888886555556778888888888888764
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=4.6e-14 Score=123.80 Aligned_cols=134 Identities=19% Similarity=0.165 Sum_probs=101.4
Q ss_pred ccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCCCCcEEecCCCcccccCCCccc-cccc
Q 041497 415 IGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSL 493 (568)
Q Consensus 415 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L 493 (568)
+.++.+|+.|++++|.+... + .+....+.++.|++++|.+++. ..+..+++|++|++++|++++..+..+. +++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 44456666666666666532 2 3444442237778888877754 5788899999999999999855445545 9999
Q ss_pred ceeecccccccccCCc--cCcCCCCCCEEeCCCCccccCcCc----cccccccCCeeecccCccccc
Q 041497 494 EYLCMQDNSFTGSIPS--TLSSLKSITELDLSRNNLSGHIPQ----YLENLSFLSFLNLSYNHFESK 554 (568)
Q Consensus 494 ~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~i~~~ 554 (568)
+.|++++|.++ .+|. .+..+++|+.|++++|+++.. |. .+..+++|+.|++++|++...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 99999999997 4454 788999999999999999854 54 488999999999999987654
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=9.6e-14 Score=121.73 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=73.8
Q ss_pred ccCCCCCceeeccCCcccccCCcccCCCC-CCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcC
Q 041497 54 VGNLSFLRSINLANNSFRAEIPHEVGNLF-RLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKF 132 (568)
Q Consensus 54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 132 (568)
+..+++|++|++++|.+.. ++. +..+. +|++|++++|.+++. ..+..+++|++|++++|++....+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4455566666666666552 333 33333 666666666666532 445566666666666666654333334566666
Q ss_pred ceeecccccCCCCCCc--ccCCCCCCCeEEeccCCCCCCCCcc----ccccccCcEEeecccccc
Q 041497 133 QLLNIAENHLRGQLPA--SIGNLSALQEINVNGNRLGGRIPST----RSHVRNLISFNVGLNQFS 191 (568)
Q Consensus 133 ~~L~l~~~~l~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~ 191 (568)
++|++++|.+. .++. .+..+++|++|++++|++. ..|.. +..+++|+.|+++.+...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 66666666664 3333 4556666666666666665 33442 555666666666655443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=2.4e-15 Score=134.84 Aligned_cols=154 Identities=22% Similarity=0.244 Sum_probs=110.0
Q ss_pred cCcccccccccccccccCCCCC------CccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhh
Q 041497 392 GNLTMLTQRLLEVNDLLGNIPP------SIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVG 465 (568)
Q Consensus 392 ~~~~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~ 465 (568)
.....++.++++.+.+++..+. .+..+++|++|++++|.+.+ ++ .+..+..+ +.|++++|.++ .+|..+.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L-~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENL-RILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTC-CEEEEEEEEEC-SCSSHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCC-CEEECCCCCcc-cccchhh
Confidence 3345555556666655555444 56667777777777777665 44 66666666 77888888877 5566677
Q ss_pred cCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCC-ccCcCCCCCCEEeCCCCccccCcCc----------
Q 041497 466 KLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGHIPQ---------- 533 (568)
Q Consensus 466 ~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---------- 533 (568)
.+++|++|++++|++++ +| .+. +++|+.|++++|.++...+ ..+..+++|+.|++++|++.+..|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 77888888888888874 45 344 8889999999998885332 4678889999999999988765544
Q ss_pred cccccccCCeeecccCcccc
Q 041497 534 YLENLSFLSFLNLSYNHFES 553 (568)
Q Consensus 534 ~~~~l~~L~~L~l~~n~i~~ 553 (568)
.+..+++|+.|+ +++++.
T Consensus 169 ~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 169 VVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHCSSCSEEC--CGGGTT
T ss_pred HHHhCCCcEEEC--CcccCH
Confidence 378888999887 777654
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=2.2e-15 Score=135.09 Aligned_cols=112 Identities=18% Similarity=0.166 Sum_probs=55.3
Q ss_pred ccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCC
Q 041497 77 EVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSAL 156 (568)
Q Consensus 77 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 156 (568)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|++. .+|..+..+++|++|++++|.+.+ ++ .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 44555555555555555542 33 4555555555555555554 344444444555555555555543 22 34455555
Q ss_pred CeEEeccCCCCCCCC-ccccccccCcEEeecccccccC
Q 041497 157 QEINVNGNRLGGRIP-STRSHVRNLISFNVGLNQFSGM 193 (568)
Q Consensus 157 ~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~ 193 (568)
++|++++|.+....+ ..+..+++|+.|++++|.+.+.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 555555555542111 2344555555555555555433
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.37 E-value=5.7e-11 Score=118.46 Aligned_cols=321 Identities=10% Similarity=0.090 Sum_probs=182.6
Q ss_pred ccccCCcccCCC-CCceeeccCCcccccCCcccCCCCCCcEEeCCCC---cCCCCCCcccccCCCCcEEeccCCcccccC
Q 041497 47 GGFLSPFVGNLS-FLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNN---YFSGKIPTNLSRCSNLVKFEASNNKLAGES 122 (568)
Q Consensus 47 ~~~~~~~~~~~~-~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n---~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 122 (568)
......+|.++. .|+.+.+..+ ++.....+|.++.+|+.+.+..+ .++.+...+|.+|.+|+.+.+..+ +....
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 333445677774 5888888754 55566778889999999988765 355566677888899988888754 44455
Q ss_pred chhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccCCCCCCCCCC
Q 041497 123 PAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGMFPPINNISS 202 (568)
Q Consensus 123 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~ 202 (568)
..+|..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +......++ ....|+.+.+......-....+..+..
T Consensus 130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~~~i~~~af~~c~~ 206 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKVTRIGTNAFSECFA 206 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECTTCCEECTTTTTTCTT
T ss_pred hhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccc-cccceeEEEECCcccccccchhhhccc
Confidence 677888899999888753 33355567888888888888764 222223333 345688888765544333336666677
Q ss_pred ccEEEeecccccccCCCccc-------------CCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCC
Q 041497 203 LEYIFIHRNIYHGSLPLDIG-------------VNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSIN 269 (568)
Q Consensus 203 L~~L~l~~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~ 269 (568)
++.......... .....++ .....+..+.+.. .+......+|..+..|+.+.+..+... +...+
T Consensus 207 l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~a 283 (394)
T 4gt6_A 207 LSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGA 283 (394)
T ss_dssp CCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTT
T ss_pred cceecccccccc-cccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcc
Confidence 776655433221 1111111 0111223333322 233344556677777777777655432 55566
Q ss_pred ccCCCCCcEEECCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhh
Q 041497 270 FGGLQNLSWLNLGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGI 349 (568)
Q Consensus 270 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~ 349 (568)
|..++.|+.+.+.. .+..+... .|..|.+|+.+.+..+ ++.+....|.+... |+.+.+..+ ++.+...+|
T Consensus 284 F~~c~~L~~i~l~~-~i~~I~~~------aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~-L~~i~ip~s-v~~I~~~aF 353 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-RITELPES------VFAGCISLKSIDIPEG-ITQILDDAFAGCEQ-LERIAIPSS-VTKIPESAF 353 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTT------TTTTCTTCCEEECCTT-CCEECTTTTTTCTT-CCEEEECTT-CCBCCGGGG
T ss_pred cccccccccccCCC-cccccCce------eecCCCCcCEEEeCCc-ccEehHhHhhCCCC-CCEEEECcc-cCEEhHhHh
Confidence 66777777777753 33333332 3566777777777543 44444445555433 666666433 444444555
Q ss_pred hhhccccccCccccccchhhccCCCeeECccCccccccCccccCccccccccccccc
Q 041497 350 ANLVNLNALGVEFNQLAVTILKSLQMLFLHENVLQGTIPSFLGNLTMLTQRLLEVND 406 (568)
Q Consensus 350 ~~~~~L~~l~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 406 (568)
..|. +|+.+.+.++.... ..+..+..|+.+.+..+.
T Consensus 354 ~~C~------------------~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 354 SNCT------------------ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTCT------------------TCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred hCCC------------------CCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 5554 45555555543221 245556666666665443
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=7.7e-12 Score=108.60 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=46.4
Q ss_pred CCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEe
Q 041497 82 FRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINV 161 (568)
Q Consensus 82 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 161 (568)
++|++|++++|.+++..|..|..+++|++|++++|+++...+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45555555555555444555555555555555555555443444455555555555555555444444555566666666
Q ss_pred ccCCCC
Q 041497 162 NGNRLG 167 (568)
Q Consensus 162 ~~~~~~ 167 (568)
++|++.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 666554
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=1.3e-10 Score=115.83 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=51.7
Q ss_pred cCchhhhcCCCCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCccccc
Q 041497 459 HFPAEVGKLKNLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 537 (568)
Q Consensus 459 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 537 (568)
....+|..+.+|+.+++..+ ++.....+|. |.+|+.+.+..+ ++.+...+|.++.+|+.+++.++.... ..+..
T Consensus 302 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~ 376 (394)
T 4gt6_A 302 LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAIST 376 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBC
T ss_pred cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhc
Confidence 33456777778888887654 4434455665 778888887544 665666777778888888887765431 34566
Q ss_pred cccCCeeecccCcc
Q 041497 538 LSFLSFLNLSYNHF 551 (568)
Q Consensus 538 l~~L~~L~l~~n~i 551 (568)
+..|+.+.+..+.+
T Consensus 377 ~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 377 DSGLQNLPVAPGSI 390 (394)
T ss_dssp CCCC----------
T ss_pred cCCCCEEEeCCCCE
Confidence 67777777665543
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.5e-11 Score=107.21 Aligned_cols=86 Identities=24% Similarity=0.302 Sum_probs=42.9
Q ss_pred CCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecccccCCCCCCcccCCCCCCCeEEe
Q 041497 82 FRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLSALQEINV 161 (568)
Q Consensus 82 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 161 (568)
++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 44455555555554444444455555555555555554333333445555555555555555333333555555555555
Q ss_pred ccCCCC
Q 041497 162 NGNRLG 167 (568)
Q Consensus 162 ~~~~~~ 167 (568)
++|++.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 555554
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=1.9e-13 Score=134.39 Aligned_cols=188 Identities=16% Similarity=0.062 Sum_probs=114.3
Q ss_pred chhhccCCCeeECccCccccccCccccC-----cccccccccccccccCCCCCCc-cCCCCceEEEcccCCCCCCCCCch
Q 041497 366 AVTILKSLQMLFLHENVLQGTIPSFLGN-----LTMLTQRLLEVNDLLGNIPPSI-GNCKNLILLTTRKNKPSGTMPRQL 439 (568)
Q Consensus 366 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~ 439 (568)
.....+.|+.+++++|.++......+.. .+.|+.|++++|.++......+ ..+++|+.|++++|.+.+.....+
T Consensus 67 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 67 SAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred HHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 3444789999999999987654433332 3688888888888765433333 235678888888887765444444
Q ss_pred hHHh----hhceEEEccCCcccccC----chhhhcCCCCcEEecCCCcccccC----CCccc-ccccceeeccccccccc
Q 041497 440 PRII----TLSVLLNLSDNLLSGHF----PAEVGKLKNLVSLDISSNMFSGEI----PTTLG-CTSLEYLCMQDNSFTGS 506 (568)
Q Consensus 440 ~~~~----~l~~~l~Ls~n~l~~~~----~~~l~~l~~L~~L~ls~n~l~~~~----~~~~~-~~~L~~L~Ls~n~l~~~ 506 (568)
.... ..++.|+|++|.++... +..+..+++|++|+|++|.+++.. +..+. +++|+.|+|++|.+++.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 3322 22377888888776422 234466777888888888776432 22233 56788888888877653
Q ss_pred C----CccCcCCCCCCEEeCCCCccccCcCcccccccc-----CCeee--cccCcccc
Q 041497 507 I----PSTLSSLKSITELDLSRNNLSGHIPQYLENLSF-----LSFLN--LSYNHFES 553 (568)
Q Consensus 507 ~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-----L~~L~--l~~n~i~~ 553 (568)
. +..+..++.|++||+++|.++......+..+.. |+.+. +.++.+..
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 2 233445677888888888777654444443321 55555 55555543
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=7.9e-12 Score=122.57 Aligned_cols=108 Identities=20% Similarity=0.164 Sum_probs=84.6
Q ss_pred EEEccCC-cccccCchhhhcCCCCcEEecCC-CcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCC
Q 041497 448 LLNLSDN-LLSGHFPAEVGKLKNLVSLDISS-NMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSR 524 (568)
Q Consensus 448 ~l~Ls~n-~l~~~~~~~l~~l~~L~~L~ls~-n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 524 (568)
.++++++ +++ .+|. +..+++|++|+|++ |.+++..+..|. +++|+.|+|++|++++..+..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3577776 777 4566 78888888888886 888766666676 88888888888888877777888888888888888
Q ss_pred CccccCcCccccccccCCeeecccCcccccCCCC
Q 041497 525 NNLSGHIPQYLENLSFLSFLNLSYNHFESKSLFV 558 (568)
Q Consensus 525 n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 558 (568)
|.+++..+..|..++ |+.|++.+|++.|.|+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~ 122 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCALR 122 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGH
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCccH
Confidence 888877666666665 888888888888888754
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=2.4e-13 Score=133.75 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=56.6
Q ss_pred CCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhh-----cCCCCcEEecCCCcccccCC----Cccc
Q 041497 419 KNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVG-----KLKNLVSLDISSNMFSGEIP----TTLG 489 (568)
Q Consensus 419 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~-----~l~~L~~L~ls~n~l~~~~~----~~~~ 489 (568)
++|++|++++|.+.+.....+......++.|+|++|.++......+. ..++|++|+|++|.+++... ..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 45555555555543322222222211225555555555432222221 23455555555555442111 1112
Q ss_pred -ccccceeecccccccccC----CccCcCCCCCCEEeCCCCccccCc----CccccccccCCeeecccCccc
Q 041497 490 -CTSLEYLCMQDNSFTGSI----PSTLSSLKSITELDLSRNNLSGHI----PQYLENLSFLSFLNLSYNHFE 552 (568)
Q Consensus 490 -~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~i~ 552 (568)
+++|++|+|++|.+++.. +..+..++.|+.|++++|.++... +..+...++|++|++++|+|+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 445555555555544321 233344445555555555554321 122233455555555555544
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.09 E-value=4.6e-09 Score=104.14 Aligned_cols=146 Identities=12% Similarity=0.042 Sum_probs=81.9
Q ss_pred ccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCCCCCCCCchhHHhhhceEEEccCCcccccCchhhhcCC
Q 041497 389 SFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLK 468 (568)
Q Consensus 389 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~Ls~n~l~~~~~~~l~~l~ 468 (568)
..+..+..|+.+.+..+ +......++.+|..|+.+.+..+ +.......+..+..+ +.+++..+ +......+|..++
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l-~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL-KTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC-CEEEECCC-CSEECTTTTTTCT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh-cccccccc-ceecccccccccc
Confidence 34555555665555433 22344455666666666666443 222222233333333 44444332 3323345677777
Q ss_pred CCcEEecCCCcccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCCccccCcCcccccccc
Q 041497 469 NLVSLDISSNMFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 540 (568)
Q Consensus 469 ~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 540 (568)
+|+.+.+.++.++......|. |.+|+.+.|..+ ++.+...+|.++.+|+.+.+..+ ++.+....|.+++.
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 777777777766645555665 777777777544 55566667777777777777654 55455556666543
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=3.1e-08 Score=98.13 Aligned_cols=288 Identities=10% Similarity=0.078 Sum_probs=144.5
Q ss_pred ccCCCCCceeeccCCcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCc
Q 041497 54 VGNLSFLRSINLANNSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQ 133 (568)
Q Consensus 54 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 133 (568)
+....+|+.+.+... ++.....+|.++.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ +......+|..+ +|+
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence 334455555555432 33334445556666666666432 333444455554 4555554432 232333334332 555
Q ss_pred eeecccccCCCCCCcccCCCCCCCeEEeccCCCCCCCCccccccccCcEEeecccccccC-------------CCCCCCC
Q 041497 134 LLNIAENHLRGQLPASIGNLSALQEINVNGNRLGGRIPSTRSHVRNLISFNVGLNQFSGM-------------FPPINNI 200 (568)
Q Consensus 134 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-------------~~~l~~~ 200 (568)
.+.+..+ +.......|.++ .|+.+.+..+ +......++..+..++.+.+........ ...+...
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 5555442 211222333332 3343333322 1112223334444444444432211100 0022233
Q ss_pred CCccEEEeecccccccCCCcccCCCCCcceEeecCCccccccCccCCCCCCCCeEecCCCcccccccCCccCCCCCcEEE
Q 041497 201 SSLEYIFIHRNIYHGSLPLDIGVNLPNLRFFIISGNNLTGSLQDSLSNATNLQKLDINRNLFSGKVSINFGGLQNLSWLN 280 (568)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 280 (568)
..+..+.+..... .+....+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++.+...+|..+.+|+.+.
T Consensus 194 ~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 194 KTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp CCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 3344443332211 222333335566776666543 33345556677777777777665 4445566677777777777
Q ss_pred CCCCCCCCcCCCCchhhhcccCCCcccEEEeccCcccCcCchhhhcccccceEEEcccCcccCCCChhhhhhccccccCc
Q 041497 281 LGKNNLGTRTANDLDFITLLTNCTKLEVLVLDSNRFGAVLPFSLANLSTTMTGIAFGNNQISGFIPDGIANLVNLNALGV 360 (568)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~l~l 360 (568)
+..+ +..+... .+..|++|+.+.+.++.++.+....|.+... |+.+.+.++ ++.+...+|..|.+|+.+.+
T Consensus 270 l~~~-i~~i~~~------aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~-L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 270 FYAK-VKTVPYL------LCSGCSNLTKVVMDNSAIETLEPRVFMDCVK-LSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp ECCC-CSEECTT------TTTTCTTCCEEEECCTTCCEECTTTTTTCTT-CCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cccc-ceecccc------ccccccccccccccccccceehhhhhcCCCC-CCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 7543 3333322 3667777777777776666666666666544 777777654 55556678888888888877
Q ss_pred cc
Q 041497 361 EF 362 (568)
Q Consensus 361 ~~ 362 (568)
..
T Consensus 341 p~ 342 (379)
T 4h09_A 341 PK 342 (379)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.99 E-value=1.1e-09 Score=107.32 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=61.7
Q ss_pred ccccccCCcccCCCCCceeeccC-CcccccCCcccCCCCCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCcccccCc
Q 041497 45 SIGGFLSPFVGNLSFLRSINLAN-NSFRAEIPHEVGNLFRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNKLAGESP 123 (568)
Q Consensus 45 ~i~~~~~~~~~~~~~L~~L~ls~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 123 (568)
.+... |. +..+++|++|++++ |.+....+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++....+
T Consensus 20 ~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 45543 33 66777777777774 77765555667777777777777777776666666777777777777777664433
Q ss_pred hhhcCcCcCceeecccccCC
Q 041497 124 AEIGNLLKFQLLNIAENHLR 143 (568)
Q Consensus 124 ~~~~~l~~L~~L~l~~~~l~ 143 (568)
..+..+. |++|++.+|.+.
T Consensus 98 ~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 98 KTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TTTCSCC-CCEEECCSSCCC
T ss_pred HHcccCC-ceEEEeeCCCcc
Confidence 3444333 666666666554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=4.3e-09 Score=102.41 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=27.2
Q ss_pred ccCCCeeECccCccc---------cccCccccCcccccccccccccccCCCCCCccCCCCceEEEcccCCC
Q 041497 370 LKSLQMLFLHENVLQ---------GTIPSFLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKP 431 (568)
Q Consensus 370 ~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 431 (568)
+++|+.|.+...... +.+...+..+|.|+.|.++++.-. ..+. +. +++|+.|++..|.+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGL 205 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBC
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCC
Confidence 567777766543221 011122344566666666554211 1111 22 55566666655544
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.67 E-value=1.1e-08 Score=99.69 Aligned_cols=65 Identities=17% Similarity=0.349 Sum_probs=35.8
Q ss_pred CCCCcceEeecCCccccccCccC---CCCCCCCeEecCCCccccccc----CCccCCCCCcEEECCCCCCCC
Q 041497 224 NLPNLRFFIISGNNLTGSLQDSL---SNATNLQKLDINRNLFSGKVS----INFGGLQNLSWLNLGKNNLGT 288 (568)
Q Consensus 224 ~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~l~~~~~~~ 288 (568)
.+|+|+.|++.+|.+.+..+..+ ..+++|+.|+|+.|.+.+... ..+..+++|+.|+++.|.+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 35666666666665543221111 235667777777776654322 222445677777777766554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=3.5e-08 Score=86.52 Aligned_cols=93 Identities=18% Similarity=0.245 Sum_probs=67.1
Q ss_pred hhhhcCCCCcEEecCCCcccccCCCcc----c-ccccceeeccccccccc----CCccCcCCCCCCEEeC--CCCccccC
Q 041497 462 AEVGKLKNLVSLDISSNMFSGEIPTTL----G-CTSLEYLCMQDNSFTGS----IPSTLSSLKSITELDL--SRNNLSGH 530 (568)
Q Consensus 462 ~~l~~l~~L~~L~ls~n~l~~~~~~~~----~-~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l--~~n~l~~~ 530 (568)
..+...++|++|+|++|.+.+.....+ . .++|++|+|++|.+++. +...+...+.|++|++ ++|.+...
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 345667888888888888864333222 2 57888899998888753 3456677788999999 88888754
Q ss_pred ----cCccccccccCCeeecccCccccc
Q 041497 531 ----IPQYLENLSFLSFLNLSYNHFESK 554 (568)
Q Consensus 531 ----~~~~~~~l~~L~~L~l~~n~i~~~ 554 (568)
+.+.+...++|++|++++|.|...
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 334555668899999999987643
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.41 E-value=1.5e-08 Score=88.87 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=49.3
Q ss_pred CcccCCCCCceeeccCC-ccccc----CCcccCCCCCCcEEeCCCCcCCCC----CCcccccCCCCcEEeccCCccccc-
Q 041497 52 PFVGNLSFLRSINLANN-SFRAE----IPHEVGNLFRLQNLTLTNNYFSGK----IPTNLSRCSNLVKFEASNNKLAGE- 121 (568)
Q Consensus 52 ~~~~~~~~L~~L~ls~~-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~- 121 (568)
..+...++|++|++++| .+... +...+...++|++|++++|.++.. +...+...+.|++|++++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34556666777777766 55432 334455566677777776666522 122334445666666666665432
Q ss_pred ---CchhhcCcCcCceeec--ccccCC
Q 041497 122 ---SPAEIGNLLKFQLLNI--AENHLR 143 (568)
Q Consensus 122 ---~~~~~~~l~~L~~L~l--~~~~l~ 143 (568)
+...+...+.|++|++ ++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2333444455555555 445443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=3.6e-08 Score=90.80 Aligned_cols=81 Identities=20% Similarity=0.394 Sum_probs=48.3
Q ss_pred ccCCCCcEEeccCCcccc--cCchhhcCcCcCceeecccccCCCCCCcccCCCC--CCCeEEeccCCCCCCCCc------
Q 041497 103 SRCSNLVKFEASNNKLAG--ESPAEIGNLLKFQLLNIAENHLRGQLPASIGNLS--ALQEINVNGNRLGGRIPS------ 172 (568)
Q Consensus 103 ~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~------ 172 (568)
.++++|+.|+|++|++.+ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 345666666666666654 2334455666677777776666543 2233333 677777777777654442
Q ss_pred -cccccccCcEEee
Q 041497 173 -TRSHVRNLISFNV 185 (568)
Q Consensus 173 -~l~~l~~L~~L~l 185 (568)
.+..+++|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 3566777777764
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=4e-07 Score=83.80 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=60.0
Q ss_pred hcCCCCcEEecCCCcccc--cCCCccc-ccccceeeccccccccc-CCccCcCCCCCCEEeCCCCccccCcC-------c
Q 041497 465 GKLKNLVSLDISSNMFSG--EIPTTLG-CTSLEYLCMQDNSFTGS-IPSTLSSLKSITELDLSRNNLSGHIP-------Q 533 (568)
Q Consensus 465 ~~l~~L~~L~ls~n~l~~--~~~~~~~-~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-------~ 533 (568)
..+++|++|+|++|++++ .++..+. +++|+.|+|++|.+++. ....+..+ +|+.|++++|++.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 568899999999999885 3445555 89999999999998854 12233333 89999999999886554 3
Q ss_pred cccccccCCeee
Q 041497 534 YLENLSFLSFLN 545 (568)
Q Consensus 534 ~~~~l~~L~~L~ 545 (568)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467788888876
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=1.1e-07 Score=81.09 Aligned_cols=83 Identities=11% Similarity=0.035 Sum_probs=62.4
Q ss_pred eEEEccCCcccccCchhhhcCCCCcEEecCCCc-ccccCCCccc-----ccccceeeccccc-ccccCCccCcCCCCCCE
Q 041497 447 VLLNLSDNLLSGHFPAEVGKLKNLVSLDISSNM-FSGEIPTTLG-----CTSLEYLCMQDNS-FTGSIPSTLSSLKSITE 519 (568)
Q Consensus 447 ~~l~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~~~~~-----~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 519 (568)
+.||+++|.++......+..+++|++|+|++|. +++.....++ +++|+.|+|++|. ||+.....+..+++|++
T Consensus 64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~ 143 (176)
T 3e4g_A 64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143 (176)
T ss_dssp EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence 888999988887666777888999999999984 6644333333 2478888888874 77766666778888888
Q ss_pred EeCCCCc-ccc
Q 041497 520 LDLSRNN-LSG 529 (568)
Q Consensus 520 L~l~~n~-l~~ 529 (568)
|++++|+ ++.
T Consensus 144 L~L~~c~~Itd 154 (176)
T 3e4g_A 144 LFLSDLPGVKE 154 (176)
T ss_dssp EEEESCTTCCC
T ss_pred EECCCCCCCCc
Confidence 8888886 553
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=6e-07 Score=76.45 Aligned_cols=84 Identities=7% Similarity=0.090 Sum_probs=46.1
Q ss_pred CCCcEEeCCCCcCCCCCCcccccCCCCcEEeccCCc-ccccCchhhcCc----CcCceeeccccc-CCCCCCcccCCCCC
Q 041497 82 FRLQNLTLTNNYFSGKIPTNLSRCSNLVKFEASNNK-LAGESPAEIGNL----LKFQLLNIAENH-LRGQLPASIGNLSA 155 (568)
Q Consensus 82 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~l~~~~-l~~~~~~~~~~l~~ 155 (568)
.+|+.||++++.++......+..|++|++|+|++|. ++...-..+..+ ++|++|++++|. ++......+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 456666666666554444445566666666666664 332222333332 356666666664 44333334555666
Q ss_pred CCeEEeccCC
Q 041497 156 LQEINVNGNR 165 (568)
Q Consensus 156 L~~L~l~~~~ 165 (568)
|++|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666664
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.68 E-value=5.3e-05 Score=61.48 Aligned_cols=61 Identities=26% Similarity=0.338 Sum_probs=31.2
Q ss_pred eeeccccccc-ccCCccCcCCCCCCEEeCCCCccccCcCccccccccCCeeecccCcccccCCC
Q 041497 495 YLCMQDNSFT-GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFESKSLF 557 (568)
Q Consensus 495 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 557 (568)
.++.++++++ ..+|..+ .++|+.|+|++|.|+.+.+..|..+++|+.|+|++|++.|.|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 4455555554 1333222 12455555555555555555555555555555666655555553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.49 E-value=3.7e-05 Score=66.73 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=66.5
Q ss_pred chhhhcCCCCcEEecCCCcccccCCCccc-----ccccceeecccccccccC----CccCcCCCCCCEEeCCCCc---cc
Q 041497 461 PAEVGKLKNLVSLDISSNMFSGEIPTTLG-----CTSLEYLCMQDNSFTGSI----PSTLSSLKSITELDLSRNN---LS 528 (568)
Q Consensus 461 ~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-----~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~---l~ 528 (568)
.+++..-+.|++|+|++|++.+.....++ .+.|+.|+|++|.|.... .+++.....|+.|++++|. +.
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig 142 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG 142 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcC
Confidence 34566678899999999988755544443 688999999999887533 3456667789999998763 33
Q ss_pred c----CcCccccccccCCeeecccCccc
Q 041497 529 G----HIPQYLENLSFLSFLNLSYNHFE 552 (568)
Q Consensus 529 ~----~~~~~~~~l~~L~~L~l~~n~i~ 552 (568)
. .+.+.+..-++|+.|+++.|.+.
T Consensus 143 ~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 143 NQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2 24456667788999999887654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.91 E-value=0.00041 Score=60.17 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=48.7
Q ss_pred ccCCCCCceeeccCC-ccccc----CCcccCCCCCCcEEeCCCCcCCCC----CCcccccCCCCcEEeccCCccccc---
Q 041497 54 VGNLSFLRSINLANN-SFRAE----IPHEVGNLFRLQNLTLTNNYFSGK----IPTNLSRCSNLVKFEASNNKLAGE--- 121 (568)
Q Consensus 54 ~~~~~~L~~L~ls~~-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~--- 121 (568)
+.+-+.|++|+++++ .+.+. +..++.....|+.|+|++|.+.+. +.+.+...+.|++|+|++|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345566777777764 55432 344556667777777777777532 223344556777777777776532
Q ss_pred -CchhhcCcCcCceeeccc
Q 041497 122 -SPAEIGNLLKFQLLNIAE 139 (568)
Q Consensus 122 -~~~~~~~l~~L~~L~l~~ 139 (568)
+..++..-+.|++|++++
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 222333444555565554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.74 E-value=0.0023 Score=51.74 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=41.7
Q ss_pred cEEecCCCccc-ccCCCcccccccceeecccccccccCCccCcCCCCCCEEeCCCCccc
Q 041497 471 VSLDISSNMFS-GEIPTTLGCTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 528 (568)
Q Consensus 471 ~~L~ls~n~l~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 528 (568)
..++.+++.++ ..+|..+ ..+|+.|+|++|.|+...+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777765 3555544 366888888888888666777788888888888888875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.42 E-value=7.9 Score=28.94 Aligned_cols=44 Identities=7% Similarity=0.009 Sum_probs=18.8
Q ss_pred CCCCCCcccccCCCCcEEeccCCcccccCchhhcCcCcCceeecc
Q 041497 94 FSGKIPTNLSRCSNLVKFEASNNKLAGESPAEIGNLLKFQLLNIA 138 (568)
Q Consensus 94 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 138 (568)
++.+...+|.+|++|+.+.|..+ ++.+...+|.+|.+|+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 33333444444455554444432 222333444444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=71.68 E-value=4 Score=30.59 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=26.1
Q ss_pred cccccCCCccc-ccccceeecccccccccCCccCcCCCCCCEEeCCCC
Q 041497 479 MFSGEIPTTLG-CTSLEYLCMQDNSFTGSIPSTLSSLKSITELDLSRN 525 (568)
Q Consensus 479 ~l~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 525 (568)
.++..-...|. |++|+.+.|-.+ ++.+...+|.++.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34434444454 666666666554 44455566666666666666553
Done!