Query 041498
Match_columns 80
No_of_seqs 147 out of 1473
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 07:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 99.9 7.5E-27 1.6E-31 140.9 9.8 79 1-80 291-369 (499)
2 KOG0156 Cytochrome P450 CYP2 s 99.9 1.8E-25 3.8E-30 135.3 9.7 79 1-80 283-361 (489)
3 PLN02971 tryptophan N-hydroxyl 99.9 1.8E-25 4E-30 136.6 9.2 79 1-80 324-402 (543)
4 PLN03234 cytochrome P450 83B1; 99.9 9.1E-25 2E-29 132.3 9.9 79 1-80 285-363 (499)
5 PLN02394 trans-cinnamate 4-mon 99.9 8.9E-25 1.9E-29 132.5 9.9 79 1-80 290-368 (503)
6 PLN02183 ferulate 5-hydroxylas 99.9 3.2E-24 7E-29 130.5 10.0 79 1-80 301-379 (516)
7 PLN02426 cytochrome P450, fami 99.9 3.6E-24 7.8E-29 130.2 9.9 80 1-80 290-369 (502)
8 PLN03195 fatty acid omega-hydr 99.9 3.5E-24 7.5E-29 130.3 9.8 80 1-80 289-387 (516)
9 PLN02500 cytochrome P450 90B1 99.9 5.4E-24 1.2E-28 128.9 10.2 80 1-80 276-359 (490)
10 PLN00168 Cytochrome P450; Prov 99.9 7E-24 1.5E-28 129.1 10.3 80 1-80 303-382 (519)
11 PLN02290 cytokinin trans-hydro 99.9 1.2E-23 2.6E-28 127.9 9.9 77 2-80 314-390 (516)
12 PLN02966 cytochrome P450 83A1 99.9 1.1E-23 2.4E-28 127.9 9.5 80 1-80 286-366 (502)
13 KOG0157 Cytochrome P450 CYP4/C 99.9 8.4E-24 1.8E-28 128.5 8.8 80 1-80 288-367 (497)
14 PLN03112 cytochrome P450 famil 99.9 1.1E-23 2.5E-28 128.0 9.1 79 1-80 293-371 (514)
15 PTZ00404 cytochrome P450; Prov 99.9 8.9E-24 1.9E-28 127.6 8.5 76 4-80 283-358 (482)
16 PLN02169 fatty acid (omega-1)- 99.9 1.3E-23 2.8E-28 127.7 9.1 72 2-80 299-370 (500)
17 PLN02738 carotene beta-ring hy 99.9 1.4E-23 3E-28 130.3 9.4 78 1-80 388-465 (633)
18 KOG0159 Cytochrome P450 CYP11/ 99.9 1.7E-23 3.6E-28 125.8 8.5 79 2-80 314-392 (519)
19 PLN02655 ent-kaurene oxidase 99.9 4E-23 8.7E-28 124.5 10.2 78 1-80 259-336 (466)
20 PLN00110 flavonoid 3',5'-hydro 99.9 2.5E-23 5.4E-28 126.5 9.3 79 1-80 286-364 (504)
21 PLN02774 brassinosteroid-6-oxi 99.9 4.2E-23 9.1E-28 124.4 10.1 80 1-80 261-342 (463)
22 PF00067 p450: Cytochrome P450 99.9 2.1E-23 4.7E-28 123.4 8.6 79 1-80 259-337 (463)
23 PLN03018 homomethionine N-hydr 99.9 4.2E-23 9.2E-28 126.3 10.1 79 1-80 311-389 (534)
24 PLN02687 flavonoid 3'-monooxyg 99.9 3E-23 6.5E-28 126.4 9.2 79 1-80 294-372 (517)
25 PLN02936 epsilon-ring hydroxyl 99.9 7.6E-23 1.7E-27 124.0 10.1 78 1-80 275-352 (489)
26 PLN03141 3-epi-6-deoxocathaste 99.9 3.5E-22 7.6E-27 120.1 10.0 80 1-80 248-330 (452)
27 PLN02196 abscisic acid 8'-hydr 99.9 9.9E-22 2.1E-26 118.5 10.2 80 1-80 261-342 (463)
28 PLN02302 ent-kaurenoic acid ox 99.9 2.5E-21 5.5E-26 117.0 10.0 80 1-80 284-366 (490)
29 PLN02987 Cytochrome P450, fami 99.9 8E-21 1.7E-25 115.0 9.9 80 1-80 264-345 (472)
30 KOG0684 Cytochrome P450 [Secon 99.9 6.2E-21 1.3E-25 113.4 8.7 80 1-80 270-349 (486)
31 PLN02648 allene oxide synthase 99.8 1.3E-18 2.8E-23 105.7 10.0 80 1-80 268-349 (480)
32 COG2124 CypX Cytochrome P450 [ 99.7 2.3E-17 4.9E-22 98.8 7.2 63 1-80 233-295 (411)
33 PF05952 ComX: Bacillus compet 81.2 2.7 5.8E-05 18.9 2.4 18 26-43 4-21 (57)
34 PF15300 INT_SG_DDX_CT_C: INTS 69.0 3.3 7.2E-05 19.2 1.1 15 63-77 39-53 (65)
35 PF14129 DUF4296: Domain of un 62.8 16 0.00036 17.6 5.9 40 11-50 40-79 (87)
36 PF08285 DPM3: Dolichol-phosph 61.7 19 0.00041 17.8 3.2 28 22-49 54-81 (91)
37 TIGR03244 arg_catab_AstA argin 61.2 14 0.0003 22.8 2.9 38 25-62 140-178 (336)
38 PRK01642 cls cardiolipin synth 57.5 29 0.00062 22.4 4.0 48 32-80 434-481 (483)
39 PF12554 MOZART1: Mitotic-spin 55.4 18 0.00039 15.7 4.1 42 4-45 6-47 (48)
40 COG0851 MinE Septum formation 51.1 31 0.00067 17.0 3.4 44 9-52 3-53 (88)
41 PRK10456 arginine succinyltran 50.5 17 0.00036 22.6 2.1 37 26-62 143-180 (344)
42 TIGR03245 arg_AOST_alph argini 50.3 14 0.0003 22.8 1.7 37 26-62 142-179 (336)
43 TIGR03243 arg_catab_AOST argin 49.1 15 0.00033 22.7 1.7 37 26-62 141-178 (335)
44 smart00426 TEA TEA domain. 46.6 18 0.0004 16.9 1.5 16 65-80 8-23 (68)
45 PF07849 DUF1641: Protein of u 43.2 29 0.00062 14.4 2.5 17 26-42 14-30 (42)
46 PF14824 Sirohm_synth_M: Siroh 41.6 26 0.00057 13.6 2.2 15 34-48 15-29 (30)
47 PF10777 YlaC: Inner membrane 37.2 13 0.00027 20.3 0.2 33 27-60 114-146 (155)
48 PF01924 HypD: Hydrogenase for 32.6 19 0.0004 22.5 0.4 19 13-31 131-149 (355)
49 PRK15062 hydrogenase isoenzyme 31.8 17 0.00036 22.7 0.2 19 12-30 135-153 (364)
50 KOG3841 TEF-1 and related tran 31.7 38 0.00083 21.5 1.6 17 64-80 80-96 (455)
51 PF11998 DUF3493: Protein of u 31.6 62 0.0013 15.5 2.0 15 34-48 2-16 (75)
52 cd07922 CarBa CarBa is the A s 31.4 71 0.0015 15.5 3.1 28 25-52 7-34 (81)
53 cd03113 CTGs CTP synthetase (C 31.3 72 0.0016 19.1 2.6 41 35-75 114-161 (255)
54 TIGR00075 hypD hydrogenase exp 30.6 17 0.00037 22.7 0.1 19 12-30 141-159 (369)
55 COG3138 AstA Arginine/ornithin 30.2 95 0.0021 19.2 3.0 36 27-62 144-180 (336)
56 COG2098 Uncharacterized protei 29.4 44 0.00096 17.3 1.4 18 62-79 37-54 (116)
57 COG4536 CorB Putative Mg2+ and 28.5 1.7E+02 0.0037 18.9 4.0 32 5-36 10-42 (423)
58 TIGR01215 minE cell division t 28.4 81 0.0017 15.2 3.9 19 34-52 34-52 (81)
59 PRK03636 hypothetical protein; 28.2 1.2E+02 0.0026 17.1 3.6 31 12-42 14-44 (179)
60 PRK15321 putative type III sec 28.0 93 0.002 15.8 3.3 43 31-73 32-75 (120)
61 PF03634 TCP: TCP family trans 28.0 48 0.001 17.4 1.5 23 6-28 29-52 (138)
62 PF06418 CTP_synth_N: CTP synt 26.8 79 0.0017 19.2 2.3 39 34-72 114-159 (276)
63 PF12627 PolyA_pol_RNAbd: Prob 26.4 21 0.00044 15.8 -0.1 15 38-52 24-38 (64)
64 PRK03057 hypothetical protein; 25.9 1.3E+02 0.0029 16.9 3.6 32 11-42 11-42 (180)
65 KOG0723 Molecular chaperone (D 25.1 1.1E+02 0.0025 15.8 3.2 17 59-75 86-102 (112)
66 PRK13988 cell division topolog 25.0 1.1E+02 0.0023 15.4 3.4 19 34-52 37-55 (97)
67 PRK13990 cell division topolog 24.8 89 0.0019 15.5 1.9 18 35-52 42-59 (90)
68 PF10457 MENTAL: Cholesterol-c 24.6 1.4E+02 0.0031 16.7 3.1 34 14-47 10-43 (171)
69 KOG1062 Vesicle coat complex A 24.1 2.7E+02 0.006 19.9 4.5 32 2-34 511-542 (866)
70 PRK12452 cardiolipin synthetas 24.1 1.7E+02 0.0038 19.3 3.6 47 33-80 461-507 (509)
71 PF07055 Eno-Rase_FAD_bd: Enoy 24.0 93 0.002 14.4 2.1 17 61-77 35-51 (65)
72 KOG0736 Peroxisome assembly fa 23.3 2.1E+02 0.0044 20.7 3.8 39 39-77 651-690 (953)
73 COG0767 Ttg2B ABC-type transpo 23.1 1.9E+02 0.004 17.6 4.3 35 4-48 104-138 (267)
74 PF03592 Terminase_2: Terminas 22.6 1.3E+02 0.0029 15.7 2.5 23 26-48 34-56 (144)
75 KOG3348 BolA (bacterial stress 22.5 1.2E+02 0.0025 15.0 2.2 20 29-48 47-66 (85)
76 COG3586 Uncharacterized conser 21.9 35 0.00075 17.2 0.2 20 56-75 79-98 (101)
77 PF07000 DUF1308: Protein of u 21.9 1.5E+02 0.0032 18.5 2.9 18 60-77 33-50 (361)
78 PRK13991 cell division topolog 21.8 1.2E+02 0.0026 14.9 4.2 19 34-52 35-53 (87)
79 PRK13989 cell division topolog 21.8 72 0.0016 15.5 1.3 18 35-52 37-54 (84)
80 PF07577 DUF1547: Domain of Un 21.8 1E+02 0.0022 14.0 2.2 16 37-52 2-17 (58)
81 PF06522 B12D: NADH-ubiquinone 21.6 1.1E+02 0.0024 14.3 2.2 13 25-37 22-34 (73)
82 PF08776 VASP_tetra: VASP tetr 20.4 91 0.002 13.0 2.1 12 36-47 11-22 (40)
83 PF14858 DUF4486: Domain of un 20.2 1E+02 0.0022 20.6 2.0 18 2-19 336-353 (542)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=7.5e-27 Score=140.86 Aligned_cols=79 Identities=27% Similarity=0.366 Sum_probs=75.1
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
+.++|+.+++.+++||+||||++++.++|.|++||++|+|+++||+.++.+. ..++++.+.+|+|+++||+||||+||+
T Consensus 291 t~dei~aQafvFl~AGfeTts~tlsf~lYeLA~~PdvQ~kLreEI~~~~~~~-~~ltyd~l~~L~YLd~Vi~ETLR~yP~ 369 (499)
T KOG0158|consen 291 TDDEIAAQAFVFLLAGFETTASTLSFALYELAKNPDVQDKLREEIDEVLEEK-EGLTYDSLSKLKYLDMVIKETLRLYPP 369 (499)
T ss_pred CHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhccc-CCCCHHHHhCCcHHHHHHHHHHhhCCC
Confidence 5789999999999999999999999999999999999999999999997776 339999999999999999999999996
No 2
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=1.8e-25 Score=135.31 Aligned_cols=79 Identities=43% Similarity=0.686 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
++++|+..+.++++||.|||++++.|++.+|++||++++|+++|++.+.+.. ..++.+|+.++||++|||+|++|++|+
T Consensus 283 t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~~-r~v~e~D~~~lpYL~Avi~E~~Rl~p~ 361 (489)
T KOG0156|consen 283 TDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEEIDEVVGKG-RLVSESDLPKLPYLKAVIKETLRLHPP 361 (489)
T ss_pred CHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCC-CCCChhhhccCHHHHHHHHHHHhcCCC
Confidence 5789999999999999999999999999999999999999999999999987 569999999999999999999999986
No 3
>PLN02971 tryptophan N-hydroxylase
Probab=99.93 E-value=1.8e-25 Score=136.65 Aligned_cols=79 Identities=25% Similarity=0.559 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
++++|.+.+.++++||+|||+.++.|++++|+.||++|+|+++|++.+++.. ..++++++.+|||+++||+|++|++|+
T Consensus 324 s~~~i~~~~~~l~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~EI~~v~g~~-~~~t~~d~~~LpYl~avi~E~lRl~p~ 402 (543)
T PLN02971 324 TADEIKPTIKELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEEIDRVVGKE-RFVQESDIPKLNYVKAIIREAFRLHPV 402 (543)
T ss_pred CHHHHHHhHHHHheeccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCC-CCCCHHHhccCHHHHHHHHHHHhcCCC
Confidence 4688999999999999999999999999999999999999999999999875 779999999999999999999999986
No 4
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.92 E-value=9.1e-25 Score=132.33 Aligned_cols=79 Identities=46% Similarity=0.794 Sum_probs=74.9
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
++++|.+.+.++++||+|||+.++.|++++|++||++++++++|++.++++. ..++++++++|||+++||+|++|++||
T Consensus 285 ~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~v~~kl~~Ei~~~~~~~-~~~~~~~l~~l~yl~avi~E~lRl~p~ 363 (499)
T PLN03234 285 THENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIGDK-GYVSEEDIPNLPYLKAVIKESLRLEPV 363 (499)
T ss_pred CHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCC-CCCCHHHHhcChHHHHHHHHHhccCCC
Confidence 4688999999999999999999999999999999999999999999998775 678999999999999999999999996
No 5
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.92 E-value=8.9e-25 Score=132.48 Aligned_cols=79 Identities=30% Similarity=0.479 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
+++++...+.++++||+|||+.++.|++++|++||++++++++|++.+.+.. ..++++++.+|||+++||+|++|++||
T Consensus 290 ~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~-~~~~~~~l~~lpyl~avi~EtlRl~p~ 368 (503)
T PLN02394 290 NEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPG-NQVTEPDTHKLPYLQAVVKETLRLHMA 368 (503)
T ss_pred CHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCC-CCCCHhHHhhCHHHHHHHHHHHhcCCC
Confidence 4678889999999999999999999999999999999999999999998865 568899999999999999999999996
No 6
>PLN02183 ferulate 5-hydroxylase
Probab=99.92 E-value=3.2e-24 Score=130.53 Aligned_cols=79 Identities=37% Similarity=0.591 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
+++++.+.+..+++||+|||+.++.|++++|++||++++|+++|++.+++.. ..++.+++.+|||+++||+|++|++||
T Consensus 301 ~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~Ei~~v~~~~-~~~~~~~l~~L~yl~avi~EtlRl~p~ 379 (516)
T PLN02183 301 TRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKRVQQELADVVGLN-RRVEESDLEKLTYLKCTLKETLRLHPP 379 (516)
T ss_pred CHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCC-CCCCHHHhccChHHHHHHHHHhccCCC
Confidence 3678999999999999999999999999999999999999999999998765 568999999999999999999999996
No 7
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.92 E-value=3.6e-24 Score=130.15 Aligned_cols=80 Identities=23% Similarity=0.357 Sum_probs=74.0
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
+++++.+.+.++++||+|||+.++.|++++|++||++++++++|++.+.+.....++++++++|||+++||+|++|++||
T Consensus 290 ~~~~l~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~t~~~l~~LpYl~avi~EtLRl~p~ 369 (502)
T PLN02426 290 DDKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGPNQEAASFEEMKEMHYLHAALYESMRLFPP 369 (502)
T ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCCCCHHHHhcChHHHHHHHHHHhCCCC
Confidence 35789999999999999999999999999999999999999999999887643468999999999999999999999997
No 8
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.92 E-value=3.5e-24 Score=130.32 Aligned_cols=80 Identities=31% Similarity=0.519 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCC-------------------CCCCCHHhh
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGN-------------------KGFVNEDDV 61 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~-------------------~~~~~~~~~ 61 (80)
+++++.+.+..+++||+|||+.++.|++++|++||++++++++|++.+++.. +..++++++
T Consensus 289 ~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 368 (516)
T PLN03195 289 TDKSLRDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGLLTYDSL 368 (516)
T ss_pred CHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcccccccccccchhhhhcccccCCCCHHHH
Confidence 4678999999999999999999999999999999999999999999876431 145789999
Q ss_pred hcChhHHHHHHHHhcCCCC
Q 041498 62 QELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 62 ~~~~~l~~~i~E~lRl~p~ 80 (80)
.++||+++||+|+||++||
T Consensus 369 ~~Lpyl~Avi~EtLRl~p~ 387 (516)
T PLN03195 369 GKLQYLHAVITETLRLYPA 387 (516)
T ss_pred hcCHHHHHHHHHHhhcCCC
Confidence 9999999999999999996
No 9
>PLN02500 cytochrome P450 90B1
Probab=99.91 E-value=5.4e-24 Score=128.86 Aligned_cols=80 Identities=18% Similarity=0.346 Sum_probs=73.0
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC----CCCCCCHHhhhcChhHHHHHHHHhc
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGG----NKGFVNEDDVQELHYLKAVVKETIR 76 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~----~~~~~~~~~~~~~~~l~~~i~E~lR 76 (80)
+++++.+.+..+++||+|||+.++.|++++|++||++|+|+++|++.+.+. .+..++++++.+|||+++||+|++|
T Consensus 276 s~~~i~~~~~~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~~~~~~~d~~~lpyl~avikEtlR 355 (490)
T PLN02500 276 STEQILDLILSLLFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEIARAKKQSGESELNWEDYKKMEFTQCVINETLR 355 (490)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccccCCCCCCCHHHhccCHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999999999988642 1245899999999999999999999
Q ss_pred CCCC
Q 041498 77 LQPT 80 (80)
Q Consensus 77 l~p~ 80 (80)
++|+
T Consensus 356 l~P~ 359 (490)
T PLN02500 356 LGNV 359 (490)
T ss_pred cCCC
Confidence 9986
No 10
>PLN00168 Cytochrome P450; Provisional
Probab=99.91 E-value=7e-24 Score=129.13 Aligned_cols=80 Identities=31% Similarity=0.513 Sum_probs=74.7
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
+++++...+..+++||+|||+.++.|++++|++||++|+++++|++.+++.....++++++.+|||+++|++|++|++||
T Consensus 303 t~~~i~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~ 382 (519)
T PLN00168 303 TDDEIVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQSKLHDEIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGLRKHPP 382 (519)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHhhCChHHHHHHHHHhhcCCC
Confidence 46899999999999999999999999999999999999999999999987543568999999999999999999999986
No 11
>PLN02290 cytokinin trans-hydroxylase
Probab=99.91 E-value=1.2e-23 Score=127.92 Aligned_cols=77 Identities=27% Similarity=0.518 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 2 YICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 2 ~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
++++.+.+..+++||+|||+.++.|++++|++||++|+++++|++.+++.. .++++++++|||+++||+|++|++||
T Consensus 314 ~~~i~~~~~~~~~AG~dTta~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~--~~~~~~l~~lpYl~avi~EtlRl~p~ 390 (516)
T PLN02290 314 LQLIMDECKTFFFAGHETTALLLTWTLMLLASNPTWQDKVRAEVAEVCGGE--TPSVDHLSKLTLLNMVINESLRLYPP 390 (516)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCC--CCCHHHHhcChHHHHHHHHHHHcCCC
Confidence 567889999999999999999999999999999999999999999998763 68999999999999999999999986
No 12
>PLN02966 cytochrome P450 83A1
Probab=99.91 E-value=1.1e-23 Score=127.87 Aligned_cols=80 Identities=41% Similarity=0.723 Sum_probs=73.6
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCC-CCCCCHHhhhcChhHHHHHHHHhcCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGN-KGFVNEDDVQELHYLKAVVKETIRLQP 79 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~l~~~i~E~lRl~p 79 (80)
+++++.+.+..+++||+|||+.++.|++++|++||++++++++|+..+++.. +..++++++++|||+++||+|++|++|
T Consensus 286 ~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~dl~~lpyl~avi~E~LRl~p 365 (502)
T PLN02966 286 TVDNVKAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEP 365 (502)
T ss_pred CHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccCCCcCCHhhccCCcHHHHHHHHHhccCC
Confidence 3678999999999999999999999999999999999999999999998753 135799999999999999999999998
Q ss_pred C
Q 041498 80 T 80 (80)
Q Consensus 80 ~ 80 (80)
|
T Consensus 366 ~ 366 (502)
T PLN02966 366 V 366 (502)
T ss_pred C
Confidence 6
No 13
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.91 E-value=8.4e-24 Score=128.48 Aligned_cols=80 Identities=20% Similarity=0.473 Sum_probs=70.7
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
++++|.+.+..+++||+|||+.+++|+++.|+.||++|+++++|+..++++.+........++|+|+++||+|++|++||
T Consensus 288 ~~~~i~d~v~tf~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~~~~~~~~~~~m~yl~~vi~EsLRLypp 367 (497)
T KOG0157|consen 288 TDEDIRDEVDTFMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEILGNRDDKWEVEKLDQMKYLEMVIKESLRLYPP 367 (497)
T ss_pred CHHHHHHHHHHheeeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCCChhhhhhhHHHHHHHHHHhccCCC
Confidence 47889999999999999999999999999999999999999999999998652333344444799999999999999997
No 14
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=127.99 Aligned_cols=79 Identities=38% Similarity=0.664 Sum_probs=74.4
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
+++++.+.+..+++||+|||+.+++|++++|++||++++++++|++.+++.. ..++++++.+|||+++||+|++|++||
T Consensus 293 ~~~~i~~~~~~~~~AG~dTTa~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~-~~~t~~~l~~L~yl~avi~EtlRl~p~ 371 (514)
T PLN03112 293 DDVEIKALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQEELDSVVGRN-RMVQESDLVHLNYLRCVVRETFRMHPA 371 (514)
T ss_pred CHHHHHHHHHHHhccccccHHHHHHHHHHHHHhChHHHHHHHHHHHHhcCCC-CcCChhhhccCcHHHHHHHHHhccCCC
Confidence 3678999999999999999999999999999999999999999999998876 678999999999999999999999986
No 15
>PTZ00404 cytochrome P450; Provisional
Probab=99.91 E-value=8.9e-24 Score=127.63 Aligned_cols=76 Identities=32% Similarity=0.516 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 4 CLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 4 ~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
++.+.+..+++||+|||+.+++|++++|++||++++++++|++.+++.. ..++++++.+|||+++|++|++|++||
T Consensus 283 ~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~v~~~~-~~~~~~~l~~L~yl~avi~EtlRl~p~ 358 (482)
T PTZ00404 283 SILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNGR-NKVLLSDRQSTPYTVAIIKETLRYKPV 358 (482)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcCC-CCCCccccccChHHHHHHHHHHHhcCC
Confidence 3788999999999999999999999999999999999999999998876 568999999999999999999999996
No 16
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.90 E-value=1.3e-23 Score=127.68 Aligned_cols=72 Identities=25% Similarity=0.519 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 2 YICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 2 ~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
++++.+.+..+++||+|||+++++|++++|+.||++|+|+++|++.+ ++.+++.+|||+++|++|++|++||
T Consensus 299 ~~~i~~~~~~~l~AG~dTTa~tl~w~l~~La~~Pevq~kl~~Ei~~v-------~~~~dl~~L~Yl~avi~EtLRl~P~ 370 (500)
T PLN02169 299 DKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTK-------FDNEDLEKLVYLHAALSESMRLYPP 370 (500)
T ss_pred hHHHHHHHHHHHHhchhHHHHHHHHHHHHHHCCHHHHHHHHHHHHhh-------CCHHHHhcCHHHHHHHHHHHhcCCC
Confidence 56899999999999999999999999999999999999999999764 3568899999999999999999996
No 17
>PLN02738 carotene beta-ring hydroxylase
Probab=99.90 E-value=1.4e-23 Score=130.32 Aligned_cols=78 Identities=31% Similarity=0.544 Sum_probs=73.4
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
+++++.+.+..+++||+|||+.+++|++++|++||++++|+++|++.+++. ..++++++++|||+++||+|++|++|+
T Consensus 388 s~~~L~~e~~~ll~AG~eTTA~tLt~~l~~L~~~Pevq~kLreEl~~v~~~--~~~t~edL~kLPYL~AVIkEtLRL~p~ 465 (633)
T PLN02738 388 SSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLGD--RFPTIEDMKKLKYTTRVINESLRLYPQ 465 (633)
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCC--CCCCHHHHccCHHHHHHHHHHHhcCCC
Confidence 467899999999999999999999999999999999999999999999874 568999999999999999999999986
No 18
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=1.7e-23 Score=125.79 Aligned_cols=79 Identities=24% Similarity=0.481 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 2 YICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 2 ~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
.+.++..+.++++||.|||+.++.|.+|.|++||+.|+++++|+..+....+..++.+++.+||||+|||||++|+||+
T Consensus 314 ~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~~~p~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv 392 (519)
T KOG0159|consen 314 RKDAKANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILAVLPSGNSELTQKALTNMPYLRACIKETLRLYPV 392 (519)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHhhCCCcccccchHHHhhCHHHHHHHHhhhceecc
Confidence 3678889999999999999999999999999999999999999999988855889999999999999999999999985
No 19
>PLN02655 ent-kaurene oxidase
Probab=99.90 E-value=4e-23 Score=124.53 Aligned_cols=78 Identities=29% Similarity=0.420 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
+++++.+.+.++++||+|||+.++.|++++|++||++++++++|++.+++.. . ++++++.++||+++|++|++|++||
T Consensus 259 s~~~i~~~~~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~~~~~~-~-~~~~~l~~l~yl~a~i~EtlRl~p~ 336 (466)
T PLN02655 259 TDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCGDE-R-VTEEDLPNLPYLNAVFHETLRKYSP 336 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCC-C-CCHHHHhcChHHHHHHHHHhccCCC
Confidence 4789999999999999999999999999999999999999999999998865 4 8999999999999999999999996
No 20
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.90 E-value=2.5e-23 Score=126.48 Aligned_cols=79 Identities=33% Similarity=0.604 Sum_probs=74.5
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
+++++.+.+.++++||+|||+.++.|++++|++||++++++++|++.+.+.. ..++++++++|||+++||+|++|++||
T Consensus 286 ~~~~i~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~-~~~~~~~~~~lpyl~avi~EtlRl~p~ 364 (504)
T PLN00110 286 TLTNIKALLLNLFTAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGRN-RRLVESDLPKLPYLQAICKESFRKHPS 364 (504)
T ss_pred CHHHHHHHHHhhhcccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCC-CCCCHHHhhcChHHHHHHHHHhcCCCC
Confidence 4678999999999999999999999999999999999999999999998875 678999999999999999999999986
No 21
>PLN02774 brassinosteroid-6-oxidase
Probab=99.90 E-value=4.2e-23 Score=124.37 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCC--CCCCCHHhhhcChhHHHHHHHHhcCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGN--KGFVNEDDVQELHYLKAVVKETIRLQ 78 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~l~~~i~E~lRl~ 78 (80)
+++++.+.+..+++||+|||+.++.|++++|++||++|+++++|++.+.+.. +..+++++++++||+++||+|++|++
T Consensus 261 s~~ei~~~~~~ll~Ag~dTt~~~l~w~l~~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~~~l~~lpyl~a~ikE~lRl~ 340 (463)
T PLN02774 261 TDEEIIDQIITILYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRAVIFETSRLA 340 (463)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCCCCCCCHHHHhcCcHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999999999999999999987642 24689999999999999999999999
Q ss_pred CC
Q 041498 79 PT 80 (80)
Q Consensus 79 p~ 80 (80)
||
T Consensus 341 P~ 342 (463)
T PLN02774 341 TI 342 (463)
T ss_pred CC
Confidence 96
No 22
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.90 E-value=2.1e-23 Score=123.38 Aligned_cols=79 Identities=33% Similarity=0.535 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
+++++...+..+++||++||+.++.|++++|++||++++++++|++.+.++. ..++.+++.++||+++||+|++|++||
T Consensus 259 s~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~-~~~~~~~l~~l~yl~a~i~EtlRl~p~ 337 (463)
T PF00067_consen 259 SDEEIAAELLTLLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDSVLGDG-REITFEDLSKLPYLDAVIKETLRLYPP 337 (463)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTTS-SSHHHHHHGTGHHHHHHHHHHHHHSTS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 4789999999999999999999999999999999999999999999998665 678999999999999999999999986
No 23
>PLN03018 homomethionine N-hydroxylase
Probab=99.90 E-value=4.2e-23 Score=126.26 Aligned_cols=79 Identities=25% Similarity=0.495 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
+++++...+..+++||+|||+.++.|++++|+.||++++++++|++.+++.. ..++.+++.++||+++|++|++|++|+
T Consensus 311 s~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~-~~~~~~~~~~lpyl~a~i~EtlRl~p~ 389 (534)
T PLN03018 311 TPDEIKAQCVEFCIAAIDNPANNMEWTLGEMLKNPEILRKALKELDEVVGKD-RLVQESDIPNLNYLKACCRETFRIHPS 389 (534)
T ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCC-CCCCHHHhcCCHHHHHHHHHHHhcCCC
Confidence 4688999999999999999999999999999999999999999999998765 678999999999999999999999986
No 24
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.90 E-value=3e-23 Score=126.35 Aligned_cols=79 Identities=37% Similarity=0.669 Sum_probs=74.4
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
+++++.+.+..+++||+|||+.++.|++++|++||++++++++|++.+.+.. ..++.+++.+|||+++||+|++|++||
T Consensus 294 ~~~~i~~~~~~~~~AG~eTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~-~~~~~~~l~~lpyl~a~i~EtlRl~p~ 372 (517)
T PLN02687 294 TDTEIKALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKKAQEELDAVVGRD-RLVSESDLPQLTYLQAVIKETFRLHPS 372 (517)
T ss_pred CHHHHHHHHHHHhccccCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCC-CCCCHHHhhhCHHHHHHHHHHHccCCC
Confidence 4678999999999999999999999999999999999999999999988765 678999999999999999999999986
No 25
>PLN02936 epsilon-ring hydroxylase
Probab=99.90 E-value=7.6e-23 Score=123.97 Aligned_cols=78 Identities=28% Similarity=0.559 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
+++++.+.+..+++||+|||+.+++|++++|++||++++++++|++.+++.. .++++++++|||+++||+|++|++||
T Consensus 275 ~~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~--~~~~~~~~~lpyl~avi~EtlRl~p~ 352 (489)
T PLN02936 275 SSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVLQGR--PPTYEDIKELKYLTRCINESMRLYPH 352 (489)
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCC--CCCHHHHhhCHHHHHHHHHhhhcCCC
Confidence 4678999999999999999999999999999999999999999999988753 47899999999999999999999986
No 26
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.88 E-value=3.5e-22 Score=120.10 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=72.4
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CCCCCCCHHhhhcChhHHHHHHHHhcC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIG---GNKGFVNEDDVQELHYLKAVVKETIRL 77 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~~l~~~i~E~lRl 77 (80)
+++++...+.++++||+|||+.++.|++++|++||++++++++|+..+.+ ..+..++.+++.++||+++||+|++|+
T Consensus 248 ~~~~i~~~~~~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~lpyl~avi~E~lRl 327 (452)
T PLN03141 248 TDDLISDNMIDMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTEENMKLKRLKADTGEPLYWTDYMSLPFTQNVITETLRM 327 (452)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhccCCCCCCCCHHHHhccHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999999999988753 223557899999999999999999999
Q ss_pred CCC
Q 041498 78 QPT 80 (80)
Q Consensus 78 ~p~ 80 (80)
+|+
T Consensus 328 ~p~ 330 (452)
T PLN03141 328 GNI 330 (452)
T ss_pred cCC
Confidence 986
No 27
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.88 E-value=9.9e-22 Score=118.51 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=73.5
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCC--CCCCCHHhhhcChhHHHHHHHHhcCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGN--KGFVNEDDVQELHYLKAVVKETIRLQ 78 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~l~~~i~E~lRl~ 78 (80)
+++++.+.+..+++||+|||+.++.|++++|++||++++++++|++.+.+.. +..++++++.++||+++|++|++|++
T Consensus 261 ~~~ei~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~yl~avi~EtlRl~ 340 (463)
T PLN02196 261 TDEQIADNIIGVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETLRVA 340 (463)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccccCCCCCHHHHhcChHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999999999999999999887642 25688999999999999999999999
Q ss_pred CC
Q 041498 79 PT 80 (80)
Q Consensus 79 p~ 80 (80)
||
T Consensus 341 p~ 342 (463)
T PLN02196 341 SI 342 (463)
T ss_pred CC
Confidence 86
No 28
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.87 E-value=2.5e-21 Score=117.01 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCC---CCCCCHHhhhcChhHHHHHHHHhcC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGN---KGFVNEDDVQELHYLKAVVKETIRL 77 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~l~~~i~E~lRl 77 (80)
+++++...+..+++||+|||+.++.|++++|++||++++++++|++.+.+.. ...+++++++++||++++|+|++|+
T Consensus 284 ~~~~i~~~~~~~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~~E~~~v~~~~~~~~~~~~~~~l~~lpyl~a~i~E~lRl 363 (490)
T PLN02302 284 DDEEIIDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLKDVRKMEYLSQVIDETLRL 363 (490)
T ss_pred CHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHhcChHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999999999987642 1237899999999999999999999
Q ss_pred CCC
Q 041498 78 QPT 80 (80)
Q Consensus 78 ~p~ 80 (80)
+|+
T Consensus 364 ~p~ 366 (490)
T PLN02302 364 INI 366 (490)
T ss_pred CCC
Confidence 986
No 29
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.86 E-value=8e-21 Score=114.98 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCC--CCCCCHHhhhcChhHHHHHHHHhcCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGN--KGFVNEDDVQELHYLKAVVKETIRLQ 78 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~l~~~i~E~lRl~ 78 (80)
+++++...+..+++||+|||+.++.|+++.|++||++++++++|++.+.+.. +..++++++.++||++++++|++|++
T Consensus 264 ~~~ei~~~~~~l~~Ag~~tta~~l~~~l~~L~~~P~~~~~l~~E~~~~~~~~~~~~~~~~~~l~~lpyl~a~i~EtLRl~ 343 (472)
T PLN02987 264 SDEEIVDFLVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKSMPFTQCVVNETLRVA 343 (472)
T ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhChHHHHHHHHHHHHHHcccCCCCCCCHHHHhcChHHHHHHHHHHHcc
Confidence 4789999999999999999999999999999999999999999999887532 25578999999999999999999999
Q ss_pred CC
Q 041498 79 PT 80 (80)
Q Consensus 79 p~ 80 (80)
||
T Consensus 344 p~ 345 (472)
T PLN02987 344 NI 345 (472)
T ss_pred CC
Confidence 86
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=6.2e-21 Score=113.40 Aligned_cols=80 Identities=29% Similarity=0.510 Sum_probs=75.9
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
+++++....+.+++||..|++.+.+|++++|++||++++.+++|+..+++++...++.+++++||.+++||+|++|++||
T Consensus 270 te~e~a~~li~~LwA~Q~ns~ptsfW~l~yLl~~Pe~~~a~~eE~k~vlG~~~~~l~~d~L~~lplL~~~IkEtLRL~~p 349 (486)
T KOG0684|consen 270 TEEEIAGLLIGLLWAGQHNSSPTSFWTLAYLLRHPEAQKAVREEQKRVLGEKKEKLTYDQLKDLPLLDSCIKETLRLHPP 349 (486)
T ss_pred cHHHHHHHHHHHHHhccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccCCCCCHHHHhcchHHHHHHHHHHhcCCc
Confidence 47899999999999999999999999999999999999999999999999875669999999999999999999999985
No 31
>PLN02648 allene oxide synthase
Probab=99.80 E-value=1.3e-18 Score=105.70 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=67.3
Q ss_pred ChHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHhChH-HHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCC
Q 041498 1 MYICLFHALQN-VFAVGTNTSAATMVWSMTYLMNNPR-AMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQ 78 (80)
Q Consensus 1 ~~~~i~~~~~~-~~~ag~~tt~~~~~~~~~~l~~~p~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~ 78 (80)
+++++.++++. +.++|++++++++.|++++|++||+ +++++++|++.+.+..+..++++++++|||+++|++|++|++
T Consensus 268 ~~~ei~~~~l~~~~~~t~~~~~~~l~~~l~~L~~~p~~v~~klr~Ei~~~~~~~~~~~t~~~l~~l~yl~avi~EtLRl~ 347 (480)
T PLN02648 268 SREEALHNLLFVLGFNAFGGFKIFFPALLKWVGRAGEELQARLAEEVRSAVKAGGGGVTFAALEKMPLVKSVVYEALRIE 347 (480)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCCCHHHHhcCHHHHHHHHHHHhhc
Confidence 46788888764 3355667777889999999999995 999999999998864335689999999999999999999999
Q ss_pred CC
Q 041498 79 PT 80 (80)
Q Consensus 79 p~ 80 (80)
||
T Consensus 348 p~ 349 (480)
T PLN02648 348 PP 349 (480)
T ss_pred CC
Confidence 86
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.72 E-value=2.3e-17 Score=98.75 Aligned_cols=63 Identities=29% Similarity=0.470 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 1 MYICLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 1 ~~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
|+++|.+.++.+++||+|||+++++|+++.|++||+.++++++|.+. ||+.++|+|++|++||
T Consensus 233 sd~Ei~~~~~~ll~AGheTTa~~l~~a~~~L~~~P~~~~~l~~e~~~-----------------~~~~~~v~E~LR~~pp 295 (411)
T COG2124 233 SDDEIRDELITLLVAGHETTANALAWALYALLRHPDQLAKLRAEPDR-----------------PLLEAVVEETLRLYPP 295 (411)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCchHHHHHHhCcch-----------------HHHHHHHHHHHHhCCc
Confidence 68999999999999999999999999999999999999999887543 8999999999999997
No 33
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=81.20 E-value=2.7 Score=18.94 Aligned_cols=18 Identities=28% Similarity=0.566 Sum_probs=15.3
Q ss_pred HHHHHHHhChHHHHHHHH
Q 041498 26 WSMTYLMNNPRAMKKVQM 43 (80)
Q Consensus 26 ~~~~~l~~~p~~~~~~~~ 43 (80)
..+.+|.+||++.+++.+
T Consensus 4 ~iV~YLv~nPevl~kl~~ 21 (57)
T PF05952_consen 4 EIVNYLVQNPEVLEKLKE 21 (57)
T ss_pred HHHHHHHHChHHHHHHHc
Confidence 467899999999999875
No 34
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=68.99 E-value=3.3 Score=19.16 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=12.3
Q ss_pred cChhHHHHHHHHhcC
Q 041498 63 ELHYLKAVVKETIRL 77 (80)
Q Consensus 63 ~~~~l~~~i~E~lRl 77 (80)
+.-++..+|+|+.|+
T Consensus 39 r~~fv~~~IkEA~RF 53 (65)
T PF15300_consen 39 RKQFVEMIIKEAARF 53 (65)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345789999999996
No 35
>PF14129 DUF4296: Domain of unknown function (DUF4296)
Probab=62.83 E-value=16 Score=17.56 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=28.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHhhC
Q 041498 11 NVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSLIG 50 (80)
Q Consensus 11 ~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~~~ 50 (80)
..++--++.++..+...+.+-++||+...++.+.+...+.
T Consensus 40 ~~I~kKy~Ids~~f~~S~~YY~~~p~~~~~Iy~~V~~rL~ 79 (87)
T PF14129_consen 40 QYIFKKYGIDSAQFDSSMVYYSRNPEEYEKIYDKVIERLE 79 (87)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 3444556667777777888888899998888887765543
No 36
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=61.73 E-value=19 Score=17.82 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHhh
Q 041498 22 ATMVWSMTYLMNNPRAMKKVQMEIRSLI 49 (80)
Q Consensus 22 ~~~~~~~~~l~~~p~~~~~~~~e~~~~~ 49 (80)
.++.|.++.....|+..+.+.+||+++-
T Consensus 54 ~~lgy~v~tFnDcpeA~~eL~~eI~eAK 81 (91)
T PF08285_consen 54 FTLGYGVATFNDCPEAAKELQKEIKEAK 81 (91)
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHHH
Confidence 4556777777778999999999888763
No 37
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=61.20 E-value=14 Score=22.84 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=28.3
Q ss_pred HHHHHHHHhChHHH-HHHHHHHHHhhCCCCCCCCHHhhh
Q 041498 25 VWSMTYLMNNPRAM-KKVQMEIRSLIGGNKGFVNEDDVQ 62 (80)
Q Consensus 25 ~~~~~~l~~~p~~~-~~~~~e~~~~~~~~~~~~~~~~~~ 62 (80)
..-+.+++.||+.. +++-+|++....+.+..+-|+.+.
T Consensus 140 r~RfLFiA~~~erF~~~viAEmrG~~De~G~SPFWd~lg 178 (336)
T TIGR03244 140 KSRFLFIAQFRERFSKKIIAEMRGVSDEQGRSPFWNALG 178 (336)
T ss_pred HHHHHHHHhhHhhhhhhhhhhhcCccCCCCCCchHHHhh
Confidence 34567899999875 567899888877776667776664
No 38
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=57.48 E-value=29 Score=22.38 Aligned_cols=48 Identities=4% Similarity=0.084 Sum_probs=37.0
Q ss_pred HhChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 32 MNNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 32 ~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
..+|+..+++.+..+.-+..+ ..++.++..+.|....+.....|+..|
T Consensus 434 i~d~~~~~~l~~~f~~d~~~s-~~i~~~~~~~r~~~~r~~~~~~rl~sP 481 (483)
T PRK01642 434 IDDTGFAADLAAMQEDYFARS-RELDLEEWRKRPLWQRIAERVARLFSP 481 (483)
T ss_pred EECHHHHHHHHHHHHHHHHhC-eEcCHHHHhhCCHHHHHHHHHHHHhcc
Confidence 346777777777666666666 778889999999999988888888765
No 39
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=55.41 E-value=18 Score=15.67 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHH
Q 041498 4 CLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEI 45 (80)
Q Consensus 4 ~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~ 45 (80)
++...+..++-.|.+..+..+...+....-+|+....+..|+
T Consensus 6 d~l~eiS~lLntgLd~etL~ici~L~e~GVnPeaLA~vI~el 47 (48)
T PF12554_consen 6 DVLHEISDLLNTGLDRETLSICIELCENGVNPEALAAVIKEL 47 (48)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 445566667777888877777777777777888777776654
No 40
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=51.05 E-value=31 Score=17.04 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=28.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHh-------ChHHHHHHHHHHHHhhCCC
Q 041498 9 LQNVFAVGTNTSAATMVWSMTYLMN-------NPRAMKKVQMEIRSLIGGN 52 (80)
Q Consensus 9 ~~~~~~ag~~tt~~~~~~~~~~l~~-------~p~~~~~~~~e~~~~~~~~ 52 (80)
++++|+.-..+|+.+.---+..+.. .|+....+++|+..+++..
T Consensus 3 l~dff~~r~~~Sa~~AkeRLQiilA~eR~~~~~pd~l~~Lr~eIl~VI~KY 53 (88)
T COG0851 3 LFDFFFSRKKNSAETAKERLQLILAHERAAGLQPDYLEQLRKEILEVISKY 53 (88)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhhhhhcCCCcchHHHHHHHHHHHHHHH
Confidence 4566665444677766654444432 2677888999999887654
No 41
>PRK10456 arginine succinyltransferase; Provisional
Probab=50.54 E-value=17 Score=22.58 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=27.6
Q ss_pred HHHHHHHhChHHH-HHHHHHHHHhhCCCCCCCCHHhhh
Q 041498 26 WSMTYLMNNPRAM-KKVQMEIRSLIGGNKGFVNEDDVQ 62 (80)
Q Consensus 26 ~~~~~l~~~p~~~-~~~~~e~~~~~~~~~~~~~~~~~~ 62 (80)
.-+.+++.||+.. +++-+|++....+.+..+-|+.+.
T Consensus 143 ~RfLFiA~~~erF~~~viAEmRG~~De~G~SPFWd~lg 180 (344)
T PRK10456 143 SRFMFMAAFRDKFNDKVVAEMRGVIDEHGYSPFWQSLG 180 (344)
T ss_pred HHHHHHHhhHhhhhhhhheeccCccCCCCCCccHHHhh
Confidence 4567889999875 567889888877776667776664
No 42
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=50.32 E-value=14 Score=22.83 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=27.5
Q ss_pred HHHHHHHhChHHH-HHHHHHHHHhhCCCCCCCCHHhhh
Q 041498 26 WSMTYLMNNPRAM-KKVQMEIRSLIGGNKGFVNEDDVQ 62 (80)
Q Consensus 26 ~~~~~l~~~p~~~-~~~~~e~~~~~~~~~~~~~~~~~~ 62 (80)
.-+.+++.||+.. +++-+|++....+.+..+-|+.+.
T Consensus 142 ~RfLFiA~~~erF~~~viAEmrG~~De~G~SPFWd~lg 179 (336)
T TIGR03245 142 ARLLFMAAHRERFQSRIIVEIQGVQDDNGDSPFWDAIG 179 (336)
T ss_pred HHHHHHHhhHhhhhhhheeeccCccCCCCCCccHHHhh
Confidence 4567889999875 567788888877776667776664
No 43
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=49.09 E-value=15 Score=22.68 Aligned_cols=37 Identities=8% Similarity=0.053 Sum_probs=27.6
Q ss_pred HHHHHHHhChHHH-HHHHHHHHHhhCCCCCCCCHHhhh
Q 041498 26 WSMTYLMNNPRAM-KKVQMEIRSLIGGNKGFVNEDDVQ 62 (80)
Q Consensus 26 ~~~~~l~~~p~~~-~~~~~e~~~~~~~~~~~~~~~~~~ 62 (80)
.-+.+++.||+.. +++-+|++....+.+..+-|+.+.
T Consensus 141 ~RfLFiA~~~erF~~~viAEmrG~~De~G~SPFWd~lg 178 (335)
T TIGR03243 141 SRFLFIAAFRERFGDKIIAEMRGVSDEQGRSPFWEALG 178 (335)
T ss_pred HHHHHHHhhHhhhhhhheeeccCccCCCCCCccHHHhh
Confidence 4567899999875 567788888777776667776664
No 44
>smart00426 TEA TEA domain.
Probab=46.60 E-value=18 Score=16.92 Aligned_cols=16 Identities=13% Similarity=0.351 Sum_probs=10.8
Q ss_pred hhHHHHHHHHhcCCCC
Q 041498 65 HYLKAVVKETIRLQPT 80 (80)
Q Consensus 65 ~~l~~~i~E~lRl~p~ 80 (80)
+++...+.|+|+.+||
T Consensus 8 ~~lE~Af~~aL~~~~~ 23 (68)
T smart00426 8 PDIEQAFQEALAIYPP 23 (68)
T ss_pred HHHHHHHHHHHHHcCc
Confidence 3455667788887775
No 45
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=43.18 E-value=29 Score=14.40 Aligned_cols=17 Identities=6% Similarity=0.327 Sum_probs=13.1
Q ss_pred HHHHHHHhChHHHHHHH
Q 041498 26 WSMTYLMNNPRAMKKVQ 42 (80)
Q Consensus 26 ~~~~~l~~~p~~~~~~~ 42 (80)
|.+...+++|+++.-+.
T Consensus 14 ~gl~~~l~DpdvqrgL~ 30 (42)
T PF07849_consen 14 FGLLRALRDPDVQRGLG 30 (42)
T ss_pred HHHHHHHcCHHHHHHHH
Confidence 55677889999987764
No 46
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=41.60 E-value=26 Score=13.57 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=10.0
Q ss_pred ChHHHHHHHHHHHHh
Q 041498 34 NPRAMKKVQMEIRSL 48 (80)
Q Consensus 34 ~p~~~~~~~~e~~~~ 48 (80)
.|..-.++++|++..
T Consensus 15 sP~la~~iR~~ie~~ 29 (30)
T PF14824_consen 15 SPRLARLIRKEIERL 29 (30)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh
Confidence 466777788887654
No 47
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=37.16 E-value=13 Score=20.28 Aligned_cols=33 Identities=15% Similarity=0.374 Sum_probs=21.5
Q ss_pred HHHHHHhChHHHHHHHHHHHHhhCCCCCCCCHHh
Q 041498 27 SMTYLMNNPRAMKKVQMEIRSLIGGNKGFVNEDD 60 (80)
Q Consensus 27 ~~~~l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~ 60 (80)
++-.++++|++-+.++++++++...+ +.++.-|
T Consensus 114 ai~~iL~~p~V~~~~K~~i~~i~~~K-gei~FYD 146 (155)
T PF10777_consen 114 AIDKILQSPQVPDEIKQGIQRIISTK-GEISFYD 146 (155)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhC-CceeEEE
Confidence 44566777777777777777777665 4444433
No 48
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=32.60 E-value=19 Score=22.47 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=13.4
Q ss_pred HhhhhhhHHHHHHHHHHHH
Q 041498 13 FAVGTNTSAATMVWSMTYL 31 (80)
Q Consensus 13 ~~ag~~tt~~~~~~~~~~l 31 (80)
+..|+|||+.+.+..+..-
T Consensus 131 ~avGFETTaP~~A~~i~~a 149 (355)
T PF01924_consen 131 FAVGFETTAPATAAAILQA 149 (355)
T ss_dssp EEEE-HHHHHHHHHHHHHH
T ss_pred EEeCcccCcHHHHHHHHHH
Confidence 4569999999988766543
No 49
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=31.82 E-value=17 Score=22.74 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=14.7
Q ss_pred HHhhhhhhHHHHHHHHHHH
Q 041498 12 VFAVGTNTSAATMVWSMTY 30 (80)
Q Consensus 12 ~~~ag~~tt~~~~~~~~~~ 30 (80)
++..|+|||+.+.+..+..
T Consensus 135 F~avGFETTaP~~A~~i~~ 153 (364)
T PRK15062 135 FFAIGFETTAPATAATLLQ 153 (364)
T ss_pred EEecCchhccHHHHHHHHH
Confidence 4567999999998877654
No 50
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=31.74 E-value=38 Score=21.52 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=14.6
Q ss_pred ChhHHHHHHHHhcCCCC
Q 041498 64 LHYLKAVVKETIRLQPT 80 (80)
Q Consensus 64 ~~~l~~~i~E~lRl~p~ 80 (80)
.|-++..++|+|+++||
T Consensus 80 SpdIEqsFqEALaiypp 96 (455)
T KOG3841|consen 80 SPDIEQSFQEALAIYPP 96 (455)
T ss_pred ChhHHHHHHHHHhhcCC
Confidence 46778889999999997
No 51
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=31.59 E-value=62 Score=15.48 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=11.5
Q ss_pred ChHHHHHHHHHHHHh
Q 041498 34 NPRAMKKVQMEIRSL 48 (80)
Q Consensus 34 ~p~~~~~~~~e~~~~ 48 (80)
+|+...|+++|...-
T Consensus 2 ~~~~~~rLraE~~aP 16 (75)
T PF11998_consen 2 DPEQYARLRAEAQAP 16 (75)
T ss_pred CHHHHHHHHHHHHCc
Confidence 577888999887653
No 52
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=31.37 E-value=71 Score=15.48 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=21.2
Q ss_pred HHHHHHHHhChHHHHHHHHHHHHhhCCC
Q 041498 25 VWSMTYLMNNPRAMKKVQMEIRSLIGGN 52 (80)
Q Consensus 25 ~~~~~~l~~~p~~~~~~~~e~~~~~~~~ 52 (80)
.-++..|.+.|.+.++.+++.+.++.+.
T Consensus 7 nrli~~L~~dp~~rerF~~DPea~~~~~ 34 (81)
T cd07922 7 NRLIQELFKDPGLIERFQDDPSAVFEEY 34 (81)
T ss_pred HHHHHHHhcCHHHHHHHHHCHHHHHHHc
Confidence 4466788899999998888777766554
No 53
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=31.25 E-value=72 Score=19.08 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHhhCCCCCCC-------CHHhhhcChhHHHHHHHHh
Q 041498 35 PRAMKKVQMEIRSLIGGNKGFV-------NEDDVQELHYLKAVVKETI 75 (80)
Q Consensus 35 p~~~~~~~~e~~~~~~~~~~~~-------~~~~~~~~~~l~~~i~E~l 75 (80)
|++.+.+++.+..+....+..+ +.-|.+.+||+.|+-+=..
T Consensus 114 PHit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~ 161 (255)
T cd03113 114 PHITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIRQMKL 161 (255)
T ss_pred cCccHHHHHHHHHhhccCCCCEEEEEeCCccccccccHHHHHHHHHHH
Confidence 5555666655555432221111 4577889999988765433
No 54
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=30.62 E-value=17 Score=22.75 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=14.8
Q ss_pred HHhhhhhhHHHHHHHHHHH
Q 041498 12 VFAVGTNTSAATMVWSMTY 30 (80)
Q Consensus 12 ~~~ag~~tt~~~~~~~~~~ 30 (80)
++..|+|||+.+.+..+..
T Consensus 141 F~avGFETTaP~~A~~i~~ 159 (369)
T TIGR00075 141 FFAIGFETTAPTTASTLLS 159 (369)
T ss_pred EEecCchhccHHHHHHHHH
Confidence 4567999999998876654
No 55
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=30.18 E-value=95 Score=19.16 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=25.5
Q ss_pred HHHHHHhChHHH-HHHHHHHHHhhCCCCCCCCHHhhh
Q 041498 27 SMTYLMNNPRAM-KKVQMEIRSLIGGNKGFVNEDDVQ 62 (80)
Q Consensus 27 ~~~~l~~~p~~~-~~~~~e~~~~~~~~~~~~~~~~~~ 62 (80)
-+.+++.||+.. +++..|++....+.+..|-|+.+.
T Consensus 144 RflfmA~~r~~F~~~ViAEmRG~sDedGrSPFW~~lg 180 (336)
T COG3138 144 RFLFMAAFRDRFADKVVAEMRGVSDEDGRSPFWESLG 180 (336)
T ss_pred hhhhhHhhHHHHHHHHHHHHhccccccCCChhHHHHh
Confidence 456788898876 567889888777765556665553
No 56
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.41 E-value=44 Score=17.26 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=14.1
Q ss_pred hcChhHHHHHHHHhcCCC
Q 041498 62 QELHYLKAVVKETIRLQP 79 (80)
Q Consensus 62 ~~~~~l~~~i~E~lRl~p 79 (80)
.+.+.+..+|.|+++..|
T Consensus 37 ~~a~~le~aI~esi~~QP 54 (116)
T COG2098 37 GTAESLEKAIEESIKVQP 54 (116)
T ss_pred cchHHHHHHHHHHHhcCC
Confidence 345678889999998876
No 57
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=28.45 E-value=1.7e+02 Score=18.92 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHH-HHHHHHHhChH
Q 041498 5 LFHALQNVFAVGTNTSAATMV-WSMTYLMNNPR 36 (80)
Q Consensus 5 i~~~~~~~~~ag~~tt~~~~~-~~~~~l~~~p~ 36 (80)
+...+++.||.|.||.-+++. .-+.+++++-+
T Consensus 10 iili~iSAfFSgSETal~a~nr~Rlr~la~~G~ 42 (423)
T COG4536 10 IILIIISAFFSGSETALTALNRYRLRHLAKQGN 42 (423)
T ss_pred HHHHHHHHHhcccHHHHhhccHHHHHHHHHccc
Confidence 345677888999999766654 34455555443
No 58
>TIGR01215 minE cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.
Probab=28.40 E-value=81 Score=15.18 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=15.2
Q ss_pred ChHHHHHHHHHHHHhhCCC
Q 041498 34 NPRAMKKVQMEIRSLIGGN 52 (80)
Q Consensus 34 ~p~~~~~~~~e~~~~~~~~ 52 (80)
.|+....+++|+..++...
T Consensus 34 ~p~~l~~mk~dil~VIskY 52 (81)
T TIGR01215 34 APEYLEELRKEILEVISKY 52 (81)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 4788889999998887664
No 59
>PRK03636 hypothetical protein; Provisional
Probab=28.16 E-value=1.2e+02 Score=17.09 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=21.7
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhChHHHHHHH
Q 041498 12 VFAVGTNTSAATMVWSMTYLMNNPRAMKKVQ 42 (80)
Q Consensus 12 ~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~ 42 (80)
.++.-+.--..-..|.+.++.+|++..+++.
T Consensus 14 wfL~~y~lK~Re~~wiLnyl~~h~~lL~~VH 44 (179)
T PRK03636 14 WFLNNYQLKRRECVWILNYLMSHDQLMEKVH 44 (179)
T ss_pred HHHHhccccchHHHHHHHHHHhCHHHHhhee
Confidence 3333333344556799999999999988874
No 60
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=28.00 E-value=93 Score=15.78 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=22.8
Q ss_pred HHhChHHHHHHHHHHHHhhCCCCCCCCHHhh-hcChhHHHHHHH
Q 041498 31 LMNNPRAMKKVQMEIRSLIGGNKGFVNEDDV-QELHYLKAVVKE 73 (80)
Q Consensus 31 l~~~p~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~l~~~i~E 73 (80)
++..|...+.+++|.+.-....++.+-+..+ ++...++..++|
T Consensus 32 la~S~~~KD~I~q~m~~F~dp~~G~pAF~s~~QQ~~mlq~~l~k 75 (120)
T PRK15321 32 SASSETLKDSIYQEMNAFKDPNSGDSAFVSFEQQTAMLQNMLAK 75 (120)
T ss_pred ccCcHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHh
Confidence 4456667778888876644333344433332 334445555554
No 61
>PF03634 TCP: TCP family transcription factor; InterPro: IPR005333 The TCP transcription factor family was named after: teosinte branched 1 (tb1, Zea mays (Maize)) [], cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) [] and PCF in rice (Oryza sativa) [, ]. The TCP proteins code for structurally related proteins implicated in the evolution of key morphological traits []. However, the biochemical function of CYC and TB1 proteins remains to be demonstrated. One of the conserved regions is predicted to form a non-canonical basic-Helix-Loop-Helix (bHLP) structure. This domain is also found in two rice DNA-binding proteins, PCF1 and PCF2, where it has been shown to be involved in DNA-binding and dimerization. This family of transcription factors are exclusive to higher plants. They can be divided into two groups, TCP-C and TCP-P, that appear to have separated following an early gene duplication event []. This duplication event may have led to functional divergence and it has been proposed that that the TCP-P subfamily are transcriptional repressors, while the TPC-C subfamily are transcription activators [].
Probab=27.98 E-value=48 Score=17.42 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=16.2
Q ss_pred HHHHHHHH-hhhhhhHHHHHHHHH
Q 041498 6 FHALQNVF-AVGTNTSAATMVWSM 28 (80)
Q Consensus 6 ~~~~~~~~-~ag~~tt~~~~~~~~ 28 (80)
+...++|- ..|+|..+-|+.|+|
T Consensus 29 Ar~FFdLQDmLGfDKaSKTveWLL 52 (138)
T PF03634_consen 29 ARKFFDLQDMLGFDKASKTVEWLL 52 (138)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHH
Confidence 33334433 569999999999976
No 62
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=26.80 E-value=79 Score=19.15 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHHhhCCCCCCC-------CHHhhhcChhHHHHHH
Q 041498 34 NPRAMKKVQMEIRSLIGGNKGFV-------NEDDVQELHYLKAVVK 72 (80)
Q Consensus 34 ~p~~~~~~~~e~~~~~~~~~~~~-------~~~~~~~~~~l~~~i~ 72 (80)
-|++.+.+.+.+..+.......+ +.-|.+++||+.|+-+
T Consensus 114 iPHitdeIk~~I~~~a~~~~~Dv~iiEiGGTVGDIEs~pFlEAirQ 159 (276)
T PF06418_consen 114 IPHITDEIKERIRRVAKKPEPDVVIIEIGGTVGDIESLPFLEAIRQ 159 (276)
T ss_dssp CCHHHHHHHHHHHHHHCCCT-SEEEEEEESETTSCCCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhcCCCCCCEEEEecCCcccccccccHHHHHHH
Confidence 47777778777777655421111 3467789999988754
No 63
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=26.42 E-value=21 Score=15.77 Aligned_cols=15 Identities=7% Similarity=0.390 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhCCC
Q 041498 38 MKKVQMEIRSLIGGN 52 (80)
Q Consensus 38 ~~~~~~e~~~~~~~~ 52 (80)
.+|+..|+.+++...
T Consensus 24 ~ERi~~El~kil~~~ 38 (64)
T PF12627_consen 24 KERIREELEKILSSP 38 (64)
T ss_dssp HHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHcCC
Confidence 578899999988765
No 64
>PRK03057 hypothetical protein; Provisional
Probab=25.95 E-value=1.3e+02 Score=16.93 Aligned_cols=32 Identities=16% Similarity=0.361 Sum_probs=22.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhChHHHHHHH
Q 041498 11 NVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQ 42 (80)
Q Consensus 11 ~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~ 42 (80)
..++.-+.--..-..|.+.++.+|++..+++.
T Consensus 11 ~wfL~~y~lK~Re~~wiLnYl~~h~~lL~~VH 42 (180)
T PRK03057 11 TWFLNNHRLKHPDARFVLLYLLQHPHLLENVH 42 (180)
T ss_pred HHHHHhccccchhHHHHHHHHHcCHHHHhhee
Confidence 33333333444556799999999999988874
No 65
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=25.10 E-value=1.1e+02 Score=15.79 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=12.9
Q ss_pred HhhhcChhHHHHHHHHh
Q 041498 59 DDVQELHYLKAVVKETI 75 (80)
Q Consensus 59 ~~~~~~~~l~~~i~E~l 75 (80)
.|....||+.+=|+|+-
T Consensus 86 PD~GGSPYlAsKINEAK 102 (112)
T KOG0723|consen 86 PDRGGSPYLASKINEAK 102 (112)
T ss_pred CcCCCCHHHHHHHHHHH
Confidence 34557899999999874
No 66
>PRK13988 cell division topological specificity factor MinE; Provisional
Probab=25.03 E-value=1.1e+02 Score=15.45 Aligned_cols=19 Identities=16% Similarity=0.413 Sum_probs=15.5
Q ss_pred ChHHHHHHHHHHHHhhCCC
Q 041498 34 NPRAMKKVQMEIRSLIGGN 52 (80)
Q Consensus 34 ~p~~~~~~~~e~~~~~~~~ 52 (80)
.|+....+++|+..++...
T Consensus 37 sp~~l~~mk~dIl~VIskY 55 (97)
T PRK13988 37 SPELLEQMRKEILEVVARY 55 (97)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3788999999999887654
No 67
>PRK13990 cell division topological specificity factor MinE; Provisional
Probab=24.75 E-value=89 Score=15.52 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHhhCCC
Q 041498 35 PRAMKKVQMEIRSLIGGN 52 (80)
Q Consensus 35 p~~~~~~~~e~~~~~~~~ 52 (80)
|+....+++|+..++...
T Consensus 42 pd~L~~lk~eIl~VI~KY 59 (90)
T PRK13990 42 SHLLAELKDEIIEVVKKY 59 (90)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578899999999998765
No 68
>PF10457 MENTAL: Cholesterol-capturing domain; InterPro: IPR019498 The following proteins share a conserved region called the MENTAL (MLN64 N-terminal) domain, composed of four transmembrane helices with three short intervening loops [, , ]: Animal MLN64 (metastatic lymph node 64), a late endosomal membrane protein containing a carboxyl-terminal cholesterol binding START domain (IPR002913 from INTERPRO). It is probably involved in intracellular cholesterol transport. Mammalian MENTHO (MLN64 N-terminal domain homologue), a late endosomal protein containing only the MENTAL domain. It is probably involved in cellular cholesterol homoeostasis. The ~170-amino acid MENTAL domain mediates MLN64 and MENTHO homo- and hetero- interactions, targets both proteins to late endosomes and binds cholesterol. The MENTAL domain might serve to maintain cholesterol at the membrane of late endosomes prior to its shuttle to cytoplasmic acceptor(s) through the START domain.
Probab=24.61 E-value=1.4e+02 Score=16.74 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=26.5
Q ss_pred hhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHH
Q 041498 14 AVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRS 47 (80)
Q Consensus 14 ~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~ 47 (80)
+..+|-.-.++-|.+..+..+.++.+.+.+|+..
T Consensus 10 fvtFDll~~~lLWiI~~~~~~~~~~~~l~~ei~~ 43 (171)
T PF10457_consen 10 FVTFDLLFTSLLWIICTMTTSGSIQSALQNEINH 43 (171)
T ss_pred hhHHHHHHHHHHHHHhhhccCCCHHHHHHHHHhh
Confidence 4566777788889888788888888888888754
No 69
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.13 E-value=2.7e+02 Score=19.95 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC
Q 041498 2 YICLFHALQNVFAVGTNTSAATMVWSMTYLMNN 34 (80)
Q Consensus 2 ~~~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~ 34 (80)
++++.+.+..++- .+.++..+-.|++..+++-
T Consensus 511 esdivd~l~~v~~-~~~s~~~tk~yal~Al~KL 542 (866)
T KOG1062|consen 511 ESDIVDKLEKVLM-SHSSDSTTKGYALTALLKL 542 (866)
T ss_pred HHHHHHHHHHHHH-hccchHHHHHHHHHHHHHH
Confidence 4566666666554 3455577777888777753
No 70
>PRK12452 cardiolipin synthetase; Reviewed
Probab=24.05 E-value=1.7e+02 Score=19.26 Aligned_cols=47 Identities=9% Similarity=0.132 Sum_probs=32.3
Q ss_pred hChHHHHHHHHHHHHhhCCCCCCCCHHhhhcChhHHHHHHHHhcCCCC
Q 041498 33 NNPRAMKKVQMEIRSLIGGNKGFVNEDDVQELHYLKAVVKETIRLQPT 80 (80)
Q Consensus 33 ~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~i~E~lRl~p~ 80 (80)
.+++...++.+....-+..+ ..++.++..+.|....+..-..|+..|
T Consensus 461 ~~~~~~~~l~~~f~~d~~~s-~~~~~~~~~~r~~~~r~~~~~~rl~sp 507 (509)
T PRK12452 461 YESETVHDIKRDFEDDFKHS-TEIKWNAFQKRSIKKRILESFMRLISP 507 (509)
T ss_pred ECHHHHHHHHHHHHHHHHhC-eECCHHHHhhCCHHHHHHHHHHHHhhh
Confidence 34556666665555555555 678888888888888888777787654
No 71
>PF07055 Eno-Rase_FAD_bd: Enoyl reductase FAD binding domain; InterPro: IPR010758 This family contains a number of bacterial putative reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3S8M_A 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A.
Probab=24.01 E-value=93 Score=14.44 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=8.0
Q ss_pred hhcChhHHHHHHHHhcC
Q 041498 61 VQELHYLKAVVKETIRL 77 (80)
Q Consensus 61 ~~~~~~l~~~i~E~lRl 77 (80)
+..+.-+...-+|-+++
T Consensus 35 ~~el~D~~gy~~eFl~L 51 (65)
T PF07055_consen 35 FKELGDYDGYRQEFLQL 51 (65)
T ss_dssp HHHHS-HHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 33444445555555554
No 72
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.31 E-value=2.1e+02 Score=20.66 Aligned_cols=39 Identities=33% Similarity=0.387 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhCCC-CCCCCHHhhhcChhHHHHHHHHhcC
Q 041498 39 KKVQMEIRSLIGGN-KGFVNEDDVQELHYLKAVVKETIRL 77 (80)
Q Consensus 39 ~~~~~e~~~~~~~~-~~~~~~~~~~~~~~l~~~i~E~lRl 77 (80)
.+++.|....++.. -..++|+|+..+..++..|.+++++
T Consensus 651 s~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIql 690 (953)
T KOG0736|consen 651 SRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQL 690 (953)
T ss_pred HHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcC
Confidence 44555555555442 2567899999999999999999986
No 73
>COG0767 Ttg2B ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.08 E-value=1.9e+02 Score=17.56 Aligned_cols=35 Identities=26% Similarity=0.193 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHHh
Q 041498 4 CLFHALQNVFAVGTNTSAATMVWSMTYLMNNPRAMKKVQMEIRSL 48 (80)
Q Consensus 4 ~i~~~~~~~~~ag~~tt~~~~~~~~~~l~~~p~~~~~~~~e~~~~ 48 (80)
|+...+..+++||.-.++.+..-.. -|++||++..
T Consensus 104 ElgPvlTal~~AGr~gSa~tAeIG~----------MritEEIDAl 138 (267)
T COG0767 104 ELGPVLTALVVAGRVGSAITAEIGA----------MRITEEIDAL 138 (267)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhc----------chHHHHHHHH
Confidence 4455566667777766655543221 2566666654
No 74
>PF03592 Terminase_2: Terminase small subunit ; InterPro: IPR005335 Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].; GO: 0006323 DNA packaging; PDB: 3ZQP_B 2CMP_A 3ZQO_C 3ZQN_B 3ZQQ_B 3ZQM_D.
Probab=22.60 E-value=1.3e+02 Score=15.74 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=16.4
Q ss_pred HHHHHHHhChHHHHHHHHHHHHh
Q 041498 26 WSMTYLMNNPRAMKKVQMEIRSL 48 (80)
Q Consensus 26 ~~~~~l~~~p~~~~~~~~e~~~~ 48 (80)
..-..|+++|.++.++.+.....
T Consensus 34 ~~asrLL~n~~V~~~I~~~~~e~ 56 (144)
T PF03592_consen 34 ANASRLLRNPKVKAYIEELMKER 56 (144)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHH
Confidence 34568899999998886654443
No 75
>KOG3348 consensus BolA (bacterial stress-induced morphogen)-related protein [Signal transduction mechanisms]
Probab=22.55 E-value=1.2e+02 Score=14.97 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=14.9
Q ss_pred HHHHhChHHHHHHHHHHHHh
Q 041498 29 TYLMNNPRAMKKVQMEIRSL 48 (80)
Q Consensus 29 ~~l~~~p~~~~~~~~e~~~~ 48 (80)
-.|.+|.-+...+++|+..+
T Consensus 47 s~L~rHRlVN~~L~Eeik~i 66 (85)
T KOG3348|consen 47 SLLARHRLVNSILAEEIKEI 66 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677877888888887765
No 76
>COG3586 Uncharacterized conserved protein [Function unknown]
Probab=21.92 E-value=35 Score=17.19 Aligned_cols=20 Identities=15% Similarity=0.571 Sum_probs=16.2
Q ss_pred CCHHhhhcChhHHHHHHHHh
Q 041498 56 VNEDDVQELHYLKAVVKETI 75 (80)
Q Consensus 56 ~~~~~~~~~~~l~~~i~E~l 75 (80)
+..++..++||....|+.++
T Consensus 79 i~i~~~~~lpy~~gLirqa~ 98 (101)
T COG3586 79 IGIEDLANLPYIMGLIRQAF 98 (101)
T ss_pred EEEeehhhchHHHHHHHHHh
Confidence 45677889999999998775
No 77
>PF07000 DUF1308: Protein of unknown function (DUF1308); InterPro: IPR010733 This family consists of several hypothetical eukaryotic sequences of around 400 residues in length. The function of this family is unknown.
Probab=21.87 E-value=1.5e+02 Score=18.55 Aligned_cols=18 Identities=28% Similarity=0.128 Sum_probs=14.8
Q ss_pred hhhcChhHHHHHHHHhcC
Q 041498 60 DVQELHYLKAVVKETIRL 77 (80)
Q Consensus 60 ~~~~~~~l~~~i~E~lRl 77 (80)
...+++|+.+++....+.
T Consensus 33 ~SsNl~hl~avw~~lk~~ 50 (361)
T PF07000_consen 33 RSSNLPHLEAVWNILKRC 50 (361)
T ss_pred cccCHHHHHHHHHHHHhC
Confidence 446899999999988874
No 78
>PRK13991 cell division topological specificity factor MinE; Provisional
Probab=21.83 E-value=1.2e+02 Score=14.91 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=15.2
Q ss_pred ChHHHHHHHHHHHHhhCCC
Q 041498 34 NPRAMKKVQMEIRSLIGGN 52 (80)
Q Consensus 34 ~p~~~~~~~~e~~~~~~~~ 52 (80)
.|+....+++|+..++...
T Consensus 35 ~p~~l~~lk~eil~VIsKY 53 (87)
T PRK13991 35 TPEMMEQMKADLAEVIKRY 53 (87)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3788899999998887654
No 79
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=21.79 E-value=72 Score=15.51 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHhhCCC
Q 041498 35 PRAMKKVQMEIRSLIGGN 52 (80)
Q Consensus 35 p~~~~~~~~e~~~~~~~~ 52 (80)
|+....+++|+..+++..
T Consensus 37 p~~l~~lk~dil~VIsKY 54 (84)
T PRK13989 37 PDYLPALQKELVAVISKY 54 (84)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 778889999998887664
No 80
>PF07577 DUF1547: Domain of Unknown Function (DUF1547); InterPro: IPR011443 This domain appears to be found only in a small family of Chlamydia species. It is usually found repeated. The function of these proteins is not known.
Probab=21.78 E-value=1e+02 Score=14.00 Aligned_cols=16 Identities=6% Similarity=0.200 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhCCC
Q 041498 37 AMKKVQMEIRSLIGGN 52 (80)
Q Consensus 37 ~~~~~~~e~~~~~~~~ 52 (80)
+..++|++++.++...
T Consensus 2 iL~~vR~HLD~vy~~~ 17 (58)
T PF07577_consen 2 ILPAVRAHLDVVYDQD 17 (58)
T ss_pred HHHHHHHHhhceecCC
Confidence 4668888888888776
No 81
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=21.60 E-value=1.1e+02 Score=14.31 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=8.7
Q ss_pred HHHHHHHHhChHH
Q 041498 25 VWSMTYLMNNPRA 37 (80)
Q Consensus 25 ~~~~~~l~~~p~~ 37 (80)
..+...+..+|++
T Consensus 22 ~~~~r~l~~~PdV 34 (73)
T PF06522_consen 22 FYLYRLLLTNPDV 34 (73)
T ss_pred HHHHHHHhcCCCe
Confidence 3455667788876
No 82
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=20.42 E-value=91 Score=12.98 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 041498 36 RAMKKVQMEIRS 47 (80)
Q Consensus 36 ~~~~~~~~e~~~ 47 (80)
++.+.++.|+.+
T Consensus 11 EIL~EvrkEl~K 22 (40)
T PF08776_consen 11 EILEEVRKELQK 22 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444555444
No 83
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=20.16 E-value=1e+02 Score=20.63 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHhhhhhh
Q 041498 2 YICLFHALQNVFAVGTNT 19 (80)
Q Consensus 2 ~~~i~~~~~~~~~ag~~t 19 (80)
+.++.+.+..+|+||.|-
T Consensus 336 E~Ei~DV~sELF~AG~el 353 (542)
T PF14858_consen 336 EDEIRDVVSELFFAGMEL 353 (542)
T ss_pred chHHHHHHHHHHHhhHHH
Confidence 468889999999999873
Done!