Query 041499
Match_columns 512
No_of_seqs 189 out of 478
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:47:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03662 Glyco_hydro_79n: Glyc 100.0 2E-77 4.2E-82 591.6 -1.5 318 15-334 2-319 (319)
2 COG3534 AbfA Alpha-L-arabinofu 100.0 1.9E-46 4E-51 374.0 27.2 431 15-504 3-499 (501)
3 PF01229 Glyco_hydro_39: Glyco 99.6 8E-15 1.7E-19 157.3 20.0 317 66-415 43-392 (486)
4 smart00813 Alpha-L-AF_C Alpha- 99.1 4.6E-10 1E-14 105.5 11.3 117 361-497 63-189 (189)
5 PF11790 Glyco_hydro_cc: Glyco 98.9 2.2E-08 4.7E-13 97.7 12.8 106 178-311 63-176 (239)
6 PF06964 Alpha-L-AF_C: Alpha-L 98.8 1.1E-08 2.4E-13 95.2 7.1 112 358-497 65-177 (177)
7 PF02055 Glyco_hydro_30: O-Gly 98.5 2E-05 4.4E-10 84.4 22.3 234 166-426 206-472 (496)
8 PF00150 Cellulase: Cellulase 98.4 1.2E-05 2.6E-10 79.8 17.9 218 64-315 22-251 (281)
9 PF12891 Glyco_hydro_44: Glyco 98.3 2.5E-06 5.4E-11 81.4 9.1 93 166-262 105-237 (239)
10 COG5520 O-Glycosyl hydrolase [ 98.2 0.00013 2.9E-09 72.5 18.5 213 169-417 157-375 (433)
11 PF07745 Glyco_hydro_53: Glyco 98.0 0.00013 2.9E-09 73.9 14.7 206 61-313 22-242 (332)
12 PF12876 Cellulase-like: Sugar 97.7 9.6E-05 2.1E-09 60.4 5.8 74 179-260 9-88 (88)
13 smart00633 Glyco_10 Glycosyl h 97.3 0.019 4.2E-07 56.5 18.1 212 119-370 13-253 (254)
14 COG3867 Arabinogalactan endo-1 97.2 0.056 1.2E-06 53.1 18.9 211 62-312 62-287 (403)
15 COG3664 XynB Beta-xylosidase [ 96.4 0.029 6.3E-07 57.5 10.9 181 181-384 105-300 (428)
16 PRK10150 beta-D-glucuronidase; 95.8 0.17 3.6E-06 56.4 14.5 67 180-262 408-474 (604)
17 PF14587 Glyco_hydr_30_2: O-Gl 95.7 0.12 2.5E-06 53.3 11.7 165 127-311 109-311 (384)
18 PF02836 Glyco_hydro_2_C: Glyc 91.8 1.4 3E-05 44.3 10.6 101 69-221 42-151 (298)
19 KOG2566 Beta-glucocerebrosidas 91.1 19 0.0004 37.2 17.2 61 362-424 432-494 (518)
20 PF00332 Glyco_hydro_17: Glyco 90.1 4 8.7E-05 41.4 12.0 193 64-315 14-242 (310)
21 PF03198 Glyco_hydro_72: Gluca 89.7 17 0.00038 36.6 15.7 127 125-262 82-216 (314)
22 COG5309 Exo-beta-1,3-glucanase 89.2 11 0.00023 37.1 13.2 151 125-314 90-245 (305)
23 PF14488 DUF4434: Domain of un 73.3 39 0.00084 30.9 10.2 91 122-231 65-161 (166)
24 PF02057 Glyco_hydro_59: Glyco 71.7 1.8E+02 0.0038 32.7 20.0 184 175-410 168-368 (669)
25 COG4130 Predicted sugar epimer 71.2 98 0.0021 29.6 13.1 108 125-248 52-164 (272)
26 PF02449 Glyco_hydro_42: Beta- 70.1 19 0.0004 37.5 8.3 55 68-144 15-69 (374)
27 TIGR03356 BGL beta-galactosida 69.2 10 0.00022 40.3 6.2 100 68-192 59-164 (427)
28 KOG4701 Chitinase [Cell wall/m 67.8 1.5E+02 0.0033 30.7 13.5 27 122-148 90-116 (568)
29 PF02806 Alpha-amylase_C: Alph 67.2 9.1 0.0002 31.1 4.3 15 489-503 79-93 (95)
30 PF10438 Cyc-maltodext_C: Cycl 66.0 20 0.00044 28.4 5.8 30 391-423 9-38 (78)
31 PRK10340 ebgA cryptic beta-D-g 55.0 51 0.0011 39.3 9.0 82 125-221 381-469 (1021)
32 PRK09525 lacZ beta-D-galactosi 53.6 49 0.0011 39.4 8.6 82 125-221 397-482 (1027)
33 PRK15014 6-phospho-beta-glucos 49.8 47 0.001 35.9 7.1 101 69-192 75-181 (477)
34 PF00331 Glyco_hydro_10: Glyco 44.0 3.6E+02 0.0078 27.3 19.7 219 121-372 58-317 (320)
35 PF02449 Glyco_hydro_42: Beta- 40.9 66 0.0014 33.4 6.4 76 295-372 283-365 (374)
36 PRK09589 celA 6-phospho-beta-g 40.7 68 0.0015 34.7 6.6 101 69-192 73-179 (476)
37 PLN02849 beta-glucosidase 39.3 71 0.0015 34.8 6.5 100 69-192 85-190 (503)
38 COG3250 LacZ Beta-galactosidas 34.1 98 0.0021 35.8 6.8 81 67-191 325-408 (808)
39 PLN02998 beta-glucosidase 33.5 95 0.0021 33.7 6.4 100 69-192 88-193 (497)
40 smart00632 Aamy_C Aamy_C domai 32.9 2.4E+02 0.0052 22.1 8.4 26 395-424 10-35 (81)
41 PF10566 Glyco_hydro_97: Glyco 32.6 1.1E+02 0.0024 30.5 6.1 129 118-258 28-156 (273)
42 PRK14706 glycogen branching en 32.4 2.4E+02 0.0052 31.7 9.5 26 120-145 215-240 (639)
43 PRK09593 arb 6-phospho-beta-gl 32.1 1.2E+02 0.0025 32.9 6.7 101 69-192 79-185 (478)
44 PF14488 DUF4434: Domain of un 31.9 1.8E+02 0.004 26.5 7.1 68 118-187 16-86 (166)
45 PF00232 Glyco_hydro_1: Glycos 30.3 96 0.0021 33.2 5.8 97 69-192 64-169 (455)
46 PRK09852 cryptic 6-phospho-bet 29.9 1.1E+02 0.0024 33.0 6.1 102 69-192 77-183 (474)
47 PRK10984 DNA-binding transcrip 29.8 51 0.0011 28.6 2.8 31 62-93 6-36 (127)
48 PF07417 Crl: Transcriptional 27.2 43 0.00092 28.9 1.9 30 63-93 5-34 (125)
49 PLN02814 beta-glucosidase 26.1 1.1E+02 0.0025 33.2 5.4 100 69-192 83-188 (504)
50 PF01522 Polysacc_deac_1: Poly 25.8 3.8E+02 0.0082 22.1 8.0 90 121-234 17-106 (123)
51 PRK12568 glycogen branching en 25.6 4.1E+02 0.009 30.4 9.8 25 121-145 318-342 (730)
52 PF13539 Peptidase_M15_4: D-al 24.6 1E+02 0.0022 23.4 3.5 60 28-93 5-66 (67)
53 PRK13511 6-phospho-beta-galact 24.1 1.4E+02 0.0031 32.1 5.7 98 69-192 60-163 (469)
54 KOG0564 5,10-methylenetetrahyd 23.3 3.3E+02 0.0072 29.4 7.8 157 29-215 12-178 (590)
55 TIGR02456 treS_nterm trehalose 23.1 2.8E+02 0.0061 30.4 7.9 26 121-146 75-100 (539)
56 TIGR03006 pepcterm_polyde poly 22.4 7.5E+02 0.016 24.3 11.6 100 124-248 30-132 (265)
57 COG2723 BglB Beta-glucosidase/ 21.8 2.5E+02 0.0054 30.1 6.7 102 68-192 64-171 (460)
58 TIGR02764 spore_ybaN_pdaB poly 21.7 6.2E+02 0.013 23.1 11.3 97 125-247 22-119 (191)
59 PF02156 Glyco_hydro_26: Glyco 21.4 2.8E+02 0.006 28.2 6.8 79 174-262 146-232 (311)
No 1
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=100.00 E-value=2e-77 Score=591.64 Aligned_cols=318 Identities=56% Similarity=1.061 Sum_probs=153.5
Q ss_pred ceEEEEeCcccccccCCceeEEEeecCCCCcCCCCCCCCCCccccCCCcCcHHHHHHHHHcCCCEEeecccccceeeEec
Q 041499 15 DVKVTVQGVTSIANTDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLDLKNKILSNAIKAFQPLRIRVGGSLQDQVLYKV 94 (512)
Q Consensus 15 ~~~v~v~~~~~~~~i~~~f~g~sie~w~~~~~~y~~~~wg~~~~~~~~l~~~~l~~l~k~l~p~~lR~GG~~~D~~~~~~ 94 (512)
.++|.|+...+++++|++|+|.++||||++||+|++|+||++||+|+||+++.|++++|+|+|.+||+||+.||+.+|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~f~catldwwp~~kc~y~~~~w~~as~~nlDL~n~~L~~a~~al~P~~iRvGGslqD~v~Y~~ 81 (319)
T PF03662_consen 2 DGTVVVDGSTAIATTDENFVCATLDWWPPSKCDYGQCSWGNASILNLDLSNPILINAAKALSPLYIRVGGSLQDQVIYDT 81 (319)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcCCCCChHHHHHHHHHH
Q 041499 95 GNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYT 174 (512)
Q Consensus 95 ~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~~~w~~~~A~~~~~y~ 174 (512)
+...++|.|+.++++..|||+++|+++++||++++|++++|+++|||||++.|+... .++++.+.|+++||+++++|+
T Consensus 82 ~~~~~~c~~~~~~~~~~~~fs~~clt~~rwd~l~~F~~~tG~~liFgLNAL~g~~~~--~~~~~~g~WnssNA~~Ll~Yt 159 (319)
T PF03662_consen 82 GDNKQPCSPFVKNASGLFGFSNGCLTMSRWDELNNFAQKTGLKLIFGLNALLGRRQL--ADRDWDGSWNSSNAQSLLKYT 159 (319)
T ss_dssp ------------------------------HHHHHHHHHHT-EEEEEE-TTTS-HHH--HHHHHHHHHHHH-TTTEEEEE
T ss_pred cccccccccccccccccccccccccchhHHHHHHHHHHHhCCEEEEEecccCCCCCC--CCCCcCCCCChHHHHHHHHHH
Confidence 987889999888888899999999999999999999999999999999999886311 023566899999999999999
Q ss_pred HHcCceeeEeeeccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEEccCCCCchhHHHHHHhhhCCCCcce
Q 041499 175 ISKGYKIESYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVVDG 254 (512)
Q Consensus 175 ~~~g~~v~~wElGNEp~~~~~~~~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~~~~~id~ 254 (512)
.+++|+|++|||||||++++.+..+++++|++||.+++++|+++|+++..+|+++||+.+.+.+|+++||++.+++.||+
T Consensus 160 ~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~~~vD~ 239 (319)
T PF03662_consen 160 ASKGYNIDSWELGNELNGSGVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGPGVVDA 239 (319)
T ss_dssp ESS-GGG--------HHHHSSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTTT--SE
T ss_pred HHcCCCccccccccccCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCCCccCE
Confidence 99999999999999999988889999999999999999999999887778899999999888999999999988656999
Q ss_pred EEEEecCCCCCCChhhhhccCChHHHHHHHHHHHHHHHHHHHhCCCCceEEeccccccCCCCCCcchHHHHHHHHHHHHH
Q 041499 255 LTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNSGGKYVSHTFADGFWFLDQLG 334 (512)
Q Consensus 255 vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Etns~~~~G~~~vsdtf~aalw~lD~l~ 334 (512)
||||+|+.++|.++.++++|++|++|+.+..+++.+++++++++|++++|+|||+++|++|+++|||+|+++|||||+||
T Consensus 240 vT~H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p~~~~WlGEtg~Ay~gG~~~vSdtFv~~FwwLDqLG 319 (319)
T PF03662_consen 240 VTWHHYNLGSGRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGPGKPVWLGETGSAYNGGAPGVSDTFVAGFWWLDQLG 319 (319)
T ss_dssp EEEEEEEE--TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH---EEEEEEEEESTT--TTTTTSTHHHHHHHHHH-
T ss_pred EEEEecCCCCCchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCCCCCeEEeCcccccCCCCCCccHHHHHHHHHHHhhC
Confidence 99999999888778888999999999999999999999999999999999999999999999999999999999999997
No 2
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-46 Score=374.03 Aligned_cols=431 Identities=16% Similarity=0.191 Sum_probs=307.6
Q ss_pred ceEEEEeCcccccccCCceeEEEeecCCCCcCCCCCCCCCCccccCCCcCcHHHHHHHHHcCCCEEe-ecccccceeeEe
Q 041499 15 DVKVTVQGVTSIANTDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLDLKNKILSNAIKAFQPLRIR-VGGSLQDQVLYK 93 (512)
Q Consensus 15 ~~~v~v~~~~~~~~i~~~f~g~sie~w~~~~~~y~~~~wg~~~~~~~~l~~~~l~~l~k~l~p~~lR-~GG~~~D~~~~~ 93 (512)
..+++|+++..++.||++++|+++| +.++|+|.|++.+.+.+++.+..++.|+.++|+|.+|+|| +|||+.|.|+|.
T Consensus 3 ~a~~~v~~d~~ig~I~k~iYG~F~E--HlGr~vY~Giyepd~p~~d~~G~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~We 80 (501)
T COG3534 3 KARAVVDTDYTIGKIDKRIYGHFIE--HLGRAVYEGIYEPDSPIADERGFRKDVLEALKDLKIPVLRWPGGNFVSGYHWE 80 (501)
T ss_pred ccceeechhhccCcchhhhhhHHHH--hhccceeeeeecCCCCCcchhhhHHHHHHHHHhcCCceeecCCcccccccccc
Confidence 3578899999999999999999999 9999999999778777888885566699999999999999 599999999999
Q ss_pred cCCCCCccCCcccC------CCCcccccccccchhhHHHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcCCCCChHHH
Q 041499 94 VGNSAKKCPHFKLR------KDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNA 167 (512)
Q Consensus 94 ~~~~~~~~~p~~~~------~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~~~w~~~~A 167 (512)
++++|.+.||.+.+ |++.||+ +||++||+++|+++++.+|+|++ ..++|
T Consensus 81 DGIGP~e~Rp~rldlaW~t~EtN~~Gt----------~EF~~~~e~iGaep~~avN~Gsr---------------gvd~a 135 (501)
T COG3534 81 DGIGPREERPRRLDLAWGTTETNEFGT----------HEFMDWCELIGAEPYIAVNLGSR---------------GVDEA 135 (501)
T ss_pred cCcCchhhCchhhcccccccccccccH----------HHHHHHHHHhCCceEEEEecCCc---------------cHHHH
Confidence 99999988987743 7888988 99999999999999999999987 36899
Q ss_pred HHHHHHHH----------------HcCceeeEeeeccccCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEEc
Q 041499 168 RDLMKYTI----------------SKGYKIESYELGNELCA-SGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLG 230 (512)
Q Consensus 168 ~~~~~y~~----------------~~g~~v~~wElGNEp~~-~~~~~~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~g 230 (512)
++|++||+ +++++|++|.||||.|| +++|+. ++.+|+.-..+++++++=+.|.+ +..++|
T Consensus 136 r~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G~~-~a~EY~~~A~e~~k~~k~~d~t~--e~~v~g 212 (501)
T COG3534 136 RNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGHK-TAPEYGRLANEYRKYMKYFDPTI--ENVVCG 212 (501)
T ss_pred HHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCcccccc-cCHHHHHHHHHHHHHHhhcCccc--cceEEe
Confidence 99999974 25889999999999988 456665 46677777777777777776664 445666
Q ss_pred cCC---CCchhHHHHHHhhhCCCCcceEEEEecCCCCCCCh-hhh-hccCChHHHHHHHHHHHHHHHHHHHhCCC--Cce
Q 041499 231 PAG---FFDKQWFNTFLEKSGQDVVDGLTHHIYNLGPGNDP-ELI-NRIQDPYYLDQIAQTYKDISETVKEFGPW--SGA 303 (512)
Q Consensus 231 p~~---~~~~~w~~~~l~~~~~~~id~vs~H~Y~~~~g~~~-~~~-~~~l~~~~l~~~~~~~~~~~~~~~~~~~~--~~~ 303 (512)
.++ ..++.|.+.+|+++.. .+|++|+|+|..+...+. ... ..+.-..+++.+... +.-+.+++.+. ..+
T Consensus 213 ~a~~~n~~~~~W~~~vl~~~~e-~vD~ISlH~Y~Gn~~~~t~ny~~~~~~~~~~i~~l~~~---~d~Vk~k~r~kk~v~l 288 (501)
T COG3534 213 SANGANPTDPNWEAVVLEEAYE-RVDYISLHYYKGNATDDTPNYWAKSLKLDRYIDDLIKK---IDYVKAKKRSKKRVGL 288 (501)
T ss_pred ecCCCCCCchHHHHHHHHHHhh-hcCeEEEEEecCccccCcHHHHHHHhhhhHHHHHHHHH---HHHHHhccccccceeE
Confidence 543 2467999999998874 899999999964321111 110 111111112222222 22233344443 356
Q ss_pred EEeccccccCCC------------------CCCcchHHHHHHH------HHHHHHHHhhccceeeeeecccCCccccccC
Q 041499 304 WVGEAGGAFNSG------------------GKYVSHTFADGFW------FLDQLGMTSTFNHKVFCRQALIGGNYALLNT 359 (512)
Q Consensus 304 wl~Etns~~~~G------------------~~~vsdtf~aalw------~lD~l~~~a~~g~~v~~~q~l~gg~Y~l~~~ 359 (512)
-++|||.||..- ..++.|+..+|.- ..|.+-+|. +++.|+..|..+ +-..
T Consensus 289 ~fDEWnvWy~~~~~d~~~~~w~~~p~~Le~~ytl~Dal~~g~~l~~f~k~sdrV~iAn-iAQlVNvi~ai~-----~ekg 362 (501)
T COG3534 289 SFDEWNVWYHVRKEDLDRIPWGTAPGLLEQIYTLEDALFAGSLLNIFHKHSDRVRIAN-IAQLVNVLAAIM-----TEKG 362 (501)
T ss_pred EEecccceeecchhhhccccCCCCCccccccchHHHHHHHHHHHHHHHhhcceeehhH-HHHHHHHhhhee-----ecCC
Confidence 889999998641 1234444433321 122222221 222333334332 2222
Q ss_pred CCCccCCcchHHHHHHHhcCCceEEeecCCC----------CceEEEEEEecCCCCEEEEEEeCCCCceeEEEEeeCCCC
Q 041499 360 TTFIPNPDYYGSLLWHRLMGKNVLATTQNAS----------PYLRVYSHCSKEKPGITVLLINLSNSTSFDVSVINDMNL 429 (512)
Q Consensus 360 ~~~~p~P~Yy~~ll~~~~~G~~vl~~~~~~~----------~~v~~YA~~~~~~g~v~l~liN~~~~~~~~v~l~~~~~~ 429 (512)
+....+|.||++.|++.+.+...|.+.++++ +.+.+.|++..+.|.|++.++|.+.+++..++|.+.|+
T Consensus 363 g~~~~~~~y~~~~~~~~~g~~~~l~~~v~~p~yd~~~~~~vp~ld~sas~~~~~~~l~i~vvN~~~~d~~~~~i~l~G~- 441 (501)
T COG3534 363 GPAWLTPIYYPFQMASVHGRGTALKVAVDSPTYDCELAEDVPYLDASASYDEEGGELTIFVVNRALEDALKLNISLNGL- 441 (501)
T ss_pred CcceeeehhhhhhheeeccCceEEEEEeccCceeccccccCcceeeeeeecccCCeEEEEEEeccccccccceEEeccc-
Confidence 3466789999999999998888888776532 56777777766458999999999999988999999886
Q ss_pred CCcccccccCCCCCceEEEEEecCCCCcccceEEECCeecccCCCCCCCCCCccccCC-CCceEEcCceEEEEEec
Q 041499 430 YPSQEQTQDSQGEKPREEYHLTPEGGNIQSDVVLLNGTPLKLTNSLDIPSMEPKLADR-YSPITVAPHSIVFATLR 504 (512)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~y~Lt~~~~~l~s~~v~lNg~~l~~~~~~~~p~l~~~~~~~-~~~i~lpp~S~~f~vl~ 504 (512)
...+.++.++||++ ++.+++.+--...+. +-.-+...+.. ..++.+||+|+.++.|.
T Consensus 442 ----------~~a~~~~~~~lt~~--~~~a~Nt~d~p~~V~------p~~~~~~~vs~~~l~~~~~~~S~~virl~ 499 (501)
T COG3534 442 ----------KKAKSAEHQVLTGD--DLNATNTFDAPENVV------PVPGKGATVSKNELTLDLPPLSVSVIRLK 499 (501)
T ss_pred ----------cccceeeEEEEecC--ccccccCCCCCCcee------cccCCCccccCCceeEecCCceEEEEEEe
Confidence 23478999999988 787876643121111 11112223333 46789999999999984
No 3
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.64 E-value=8e-15 Score=157.30 Aligned_cols=317 Identities=19% Similarity=0.253 Sum_probs=162.6
Q ss_pred HHHHHHHHHcCCCEEeecccccceee-EecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeec
Q 041499 66 KILSNAIKAFQPLRIRVGGSLQDQVL-YKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNA 144 (512)
Q Consensus 66 ~~l~~l~k~l~p~~lR~GG~~~D~~~-~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN~ 144 (512)
..|..+.+.+|.-+||+-|-+.|.+. +.... ++.. ..+.-...|++++|..+.|++|++-|-+
T Consensus 43 ~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~-----------~~~~-----~~Ynf~~lD~i~D~l~~~g~~P~vel~f 106 (486)
T PF01229_consen 43 EQLRELQEELGFRYVRFHGLFSDDMMVYSESD-----------EDGI-----PPYNFTYLDQILDFLLENGLKPFVELGF 106 (486)
T ss_dssp HHHHHHHCCS--SEEEES-TTSTTTT-EEEEE-----------TTEE-----EEE--HHHHHHHHHHHHCT-EEEEEE-S
T ss_pred HHHHHHHhccCceEEEEEeeccCchhhccccc-----------cCCC-----CcCChHHHHHHHHHHHHcCCEEEEEEEe
Confidence 34677777888999999998877443 33210 0100 0123357899999999999999999987
Q ss_pred cCCCccCCCC-CCCcC---------CCCChHHHHHHHHHH-HHcCc-ee--eEeeeccccCCCCCCCCCCHHHHHHHHHH
Q 041499 145 LIGRKKSKTD-DTLWE---------GDWNAQNARDLMKYT-ISKGY-KI--ESYELGNELCASGVSAKVSAEQYAKDIVA 210 (512)
Q Consensus 145 ~~~~~~~~~~-~~~~~---------~~w~~~~A~~~~~y~-~~~g~-~v--~~wElGNEp~~~~~~~~~s~~~Ya~d~~~ 210 (512)
....-..+.. .-.+. ..|. .-..++++.. ...|. .| .+|||.||||+..+...-+.++|.+-|+.
T Consensus 107 ~p~~~~~~~~~~~~~~~~~~pp~~~~~W~-~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~ 185 (486)
T PF01229_consen 107 MPMALASGYQTVFWYKGNISPPKDYEKWR-DLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDA 185 (486)
T ss_dssp B-GGGBSS--EETTTTEE-S-BS-HHHHH-HHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHH
T ss_pred chhhhcCCCCccccccCCcCCcccHHHHH-HHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHH
Confidence 5432100000 00010 1121 1123333332 12222 12 37899999998543333467889999999
Q ss_pred HHHHHHHHCCCCCCCCeEEccCCC-CchhHHHHHHhhhC--CCCcceEEEEecCCCCCCCh-hhhhccCChHHHHHHHHH
Q 041499 211 LKNLVREMYPDATTQPKVLGPAGF-FDKQWFNTFLEKSG--QDVVDGLTHHIYNLGPGNDP-ELINRIQDPYYLDQIAQT 286 (512)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~gp~~~-~~~~w~~~~l~~~~--~~~id~vs~H~Y~~~~g~~~-~~~~~~l~~~~l~~~~~~ 286 (512)
.+++||++.|.. ++.||+.+ ....|..+|++-+. ...+|++|+|.|+.+.+.+. ......+.. .+.....
T Consensus 186 ~~~~iK~~~p~~----~vGGp~~~~~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~~~~~~~--~~~~~~~ 259 (486)
T PF01229_consen 186 TARAIKAVDPEL----KVGGPAFAWAYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENMYERIED--SRRLFPE 259 (486)
T ss_dssp HHHHHHHH-TTS----EEEEEEEETT-THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-EEEEB----HHHHHHH
T ss_pred HHHHHHHhCCCC----cccCccccccHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhHHhhhhh--HHHHHHH
Confidence 999999998864 89999543 23478888765332 13699999999986432111 011111111 2223344
Q ss_pred HHHHHHHHH-HhCCCCceEEeccccccCCCCCCcchHHHHHHHHHHHHHHHhhccceeee-------------eecccCC
Q 041499 287 YKDISETVK-EFGPWSGAWVGEAGGAFNSGGKYVSHTFADGFWFLDQLGMTSTFNHKVFC-------------RQALIGG 352 (512)
Q Consensus 287 ~~~~~~~~~-~~~~~~~~wl~Etns~~~~G~~~vsdtf~aalw~lD~l~~~a~~g~~v~~-------------~q~l~gg 352 (512)
++.++.+++ +..|..|+.++|+|+... ....+.|+...|-..+..+........+.+. ....+.|
T Consensus 260 ~~~~~~~~~~e~~p~~~~~~tE~n~~~~-~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~sD~Fee~~~~~~pf~g 338 (486)
T PF01229_consen 260 LKETRPIINDEADPNLPLYITEWNASIS-PRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFSDRFEENGTPRKPFHG 338 (486)
T ss_dssp HHHHHHHHHTSSSTT--EEEEEEES-SS-TT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SBS---TTSS-SSSSSS
T ss_pred HHHHHHHHhhccCCCCceeecccccccC-CCcchhccccchhhHHHHHHHhhhhhhhhhhccchhhhhhccCCCCCceec
Confidence 555545554 445788999999998663 3344566544333334432221111112111 1122336
Q ss_pred ccccccCCCCccCCcchHHHHHHHhcCCceEEeecCCCCceEEEEEEecCCCCEEEEEEeCCC
Q 041499 353 NYALLNTTTFIPNPDYYGSLLWHRLMGKNVLATTQNASPYLRVYSHCSKEKPGITVLLINLSN 415 (512)
Q Consensus 353 ~Y~l~~~~~~~p~P~Yy~~ll~~~~~G~~vl~~~~~~~~~v~~YA~~~~~~g~v~l~liN~~~ 415 (512)
.+||+... -.+.|.||++.|.+++ |.+++... ...+. ..++++.+.|++-|...
T Consensus 339 gfGLlt~~-gI~KPa~~A~~~L~~l-g~~~~~~~---~~~~v----t~~~~~~~~il~~n~~~ 392 (486)
T PF01229_consen 339 GFGLLTKL-GIPKPAYYAFQLLNKL-GDRLVAKG---DHYIV----TSKDDGSVQILVWNHND 392 (486)
T ss_dssp -S-SEECC-CEE-HHHHHHHHHTT---SEEEEEE---TTEEE----EE-TTS-EEEEEEE--S
T ss_pred chhhhhcc-CCCchHHHHHHHHHhh-CceeEecC---CCcee----EEcCCCeEEEEEecCcC
Confidence 68888877 5789999999999998 66554432 12221 23446789999999643
No 4
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=99.12 E-value=4.6e-10 Score=105.51 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=83.1
Q ss_pred CCccCCcchHHHHHHHhcCCceEEeecCCC---------CceEEEEEEecCCCCEEEEEEeCCCCceeEEEEeeCCCCCC
Q 041499 361 TFIPNPDYYGSLLWHRLMGKNVLATTQNAS---------PYLRVYSHCSKEKPGITVLLINLSNSTSFDVSVINDMNLYP 431 (512)
Q Consensus 361 ~~~p~P~Yy~~ll~~~~~G~~vl~~~~~~~---------~~v~~YA~~~~~~g~v~l~liN~~~~~~~~v~l~~~~~~~~ 431 (512)
....+|.||++.||++++|.+++++.++++ +.+.+.|.+..+++.++|.++|.+.+++++++|.+.|+
T Consensus 63 ~~~~t~~Yyv~~lfs~~~g~~~l~~~v~~~~~~~~~~~~~~ld~sA~~~~~~~~~~v~vvN~~~~~~~~~~l~l~g~--- 139 (189)
T smart00813 63 QAWRTTTYYVFQLFSKHQGGTVLPVTISSPTYDGEDSDVPALDASASKDEDGGSLTVKVVNRSPEEAVTVTISLRGL--- 139 (189)
T ss_pred CEEECCcCHHHHHhhhhCCceEEEEEeeCCccccCcccCCcEEEEEEEeCCCCEEEEEEEeCCCCcCEEEEEEecCC---
Confidence 366789999999999999999999876532 45777776654335789999999988777899988885
Q ss_pred cccccccCCCCCceEEEEEecCCCCcccceEEECCeecccCCCCCCCCCCccccC-CCCceEEcCce
Q 041499 432 SQEQTQDSQGEKPREEYHLTPEGGNIQSDVVLLNGTPLKLTNSLDIPSMEPKLAD-RYSPITVAPHS 497 (512)
Q Consensus 432 ~~~~~~~~~~~~~~~~y~Lt~~~~~l~s~~v~lNg~~l~~~~~~~~p~l~~~~~~-~~~~i~lpp~S 497 (512)
..+.++.++|+++ ++.+.+.+-++..+... +....... ...+++|||+|
T Consensus 140 ---------~~~~~~~~~l~~~--~~~a~Nt~~~p~~V~p~------~~~~~~~~~~~~~~~lp~~S 189 (189)
T smart00813 140 ---------KAKSAEGTVLTSP--DLNAANTFEDPNKVVPV------TSTLAAVEGGTLTVTLPPHS 189 (189)
T ss_pred ---------ccceEEEEEEeCC--CCccccCCCCCCeeecc------ccCCceeeCCEEEEEeCCCC
Confidence 2235688899987 77787777665444311 11111122 23468999987
No 5
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.87 E-value=2.2e-08 Score=97.69 Aligned_cols=106 Identities=26% Similarity=0.333 Sum_probs=77.7
Q ss_pred CceeeEeeeccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEEccCCCC-------chhHHHHHHhhhC-C
Q 041499 178 GYKIESYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFF-------DKQWFNTFLEKSG-Q 249 (512)
Q Consensus 178 g~~v~~wElGNEp~~~~~~~~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~-------~~~w~~~~l~~~~-~ 249 (512)
+...+++..-||||... ..+++|+++++.|+++.+.+|. + +.++++|+... ...|+++|++.+. .
T Consensus 63 ~~~~~~ll~fNEPD~~~-qsn~~p~~aa~~w~~~~~~~~~--~----~~~l~sPa~~~~~~~~~~g~~Wl~~F~~~~~~~ 135 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPG-QSNMSPEEAAALWKQYMNPLRS--P----GVKLGSPAVAFTNGGTPGGLDWLSQFLSACARG 135 (239)
T ss_pred ccCccceeeecCCCCCC-CCCCCHHHHHHHHHHHHhHhhc--C----CcEEECCeecccCCCCCCccHHHHHHHHhcccC
Confidence 56688999999999853 6789999999999999888874 3 45899998732 2479999999875 3
Q ss_pred CCcceEEEEecCCCCCCChhhhhccCChHHHHHHHHHHHHHHHHHHHhCCCCceEEeccccc
Q 041499 250 DVVDGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGA 311 (512)
Q Consensus 250 ~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Etns~ 311 (512)
..+|++++|.|. + +. +.+...++.+ .++++ +||||||.+-.
T Consensus 136 ~~~D~iavH~Y~---~-~~------------~~~~~~i~~~---~~~~~--kPIWITEf~~~ 176 (239)
T PF11790_consen 136 CRVDFIAVHWYG---G-DA------------DDFKDYIDDL---HNRYG--KPIWITEFGCW 176 (239)
T ss_pred CCccEEEEecCC---c-CH------------HHHHHHHHHH---HHHhC--CCEEEEeeccc
Confidence 489999999992 1 11 1122223333 33453 99999999854
No 6
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=98.79 E-value=1.1e-08 Score=95.17 Aligned_cols=112 Identities=19% Similarity=0.196 Sum_probs=75.3
Q ss_pred cCCCCccCCcchHHHHHHHhcCCceEEeecCCCCceEEEEEEecCCCCEEEEEEeCCCCceeEEEEeeCCCCCCcccccc
Q 041499 358 NTTTFIPNPDYYGSLLWHRLMGKNVLATTQNASPYLRVYSHCSKEKPGITVLLINLSNSTSFDVSVINDMNLYPSQEQTQ 437 (512)
Q Consensus 358 ~~~~~~p~P~Yy~~ll~~~~~G~~vl~~~~~~~~~v~~YA~~~~~~g~v~l~liN~~~~~~~~v~l~~~~~~~~~~~~~~ 437 (512)
+.+...++|.||++.||+++.|..+| +.+.+.|.+..+++.+.|.+||.+.+ +.+++|.+.|+
T Consensus 65 ~~~~~~~tpsY~v~~lf~~~~g~~~l-------~~l~~~As~d~~~~~l~v~vVN~~~~-~~~v~l~l~g~--------- 127 (177)
T PF06964_consen 65 DGDQVFGTPSYYVQKLFSNHRGDTVL-------PPLDVSASRDEDGGELYVKVVNRSSE-PQTVTLNLQGF--------- 127 (177)
T ss_dssp TTSEEEESHHHHHHHHHHHCTTSEEE-------ESEEEEEEEETTTTEEEEEEEE-SSS-BEEEEEEETTS---------
T ss_pred CCCCEEECchHHHHHHHHhcCCCeEe-------ccEEEEEEEECCCCEEEEEEEECCCC-CEEEEEEEcCC---------
Confidence 34456789999999999999999988 56777777765445799999999888 46899998885
Q ss_pred cCCCCCceEEEEEecCCCCcccceEEECCeecccCCCCCCCCCCccc-cCCCCceEEcCce
Q 041499 438 DSQGEKPREEYHLTPEGGNIQSDVVLLNGTPLKLTNSLDIPSMEPKL-ADRYSPITVAPHS 497 (512)
Q Consensus 438 ~~~~~~~~~~y~Lt~~~~~l~s~~v~lNg~~l~~~~~~~~p~l~~~~-~~~~~~i~lpp~S 497 (512)
......+.+.|+++ ++.+.+.+-|...+. |.-.... ......++|||+|
T Consensus 128 --~~~~~a~~~~Ltg~--~~~a~Nt~~~p~~V~-------p~~~~~~~~~~~~~~~lp~~S 177 (177)
T PF06964_consen 128 --SPAATATVTTLTGD--DPDAENTFENPENVV-------PVTSTVSAEGGTFTYTLPPYS 177 (177)
T ss_dssp --TS-EEEEEEEEETS--STT-B-CSSSTTSSE-------EEEEEEEEETTEEEEEE-SSE
T ss_pred --CCCceEEEEEEECC--CcccccCCCCCCEEE-------EEEeeEEecCCEEEEEeCCCC
Confidence 22467899999987 566666644443332 2211111 1223478999998
No 7
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=98.49 E-value=2e-05 Score=84.36 Aligned_cols=234 Identities=20% Similarity=0.189 Sum_probs=128.8
Q ss_pred HHHHHHHHH---HHcCceeeEeeeccccCCC-----CC-CCCCCHHHHHHHHHH-HHHHHHHHCCCCCCCCeEEccCCC-
Q 041499 166 NARDLMKYT---ISKGYKIESYELGNELCAS-----GV-SAKVSAEQYAKDIVA-LKNLVREMYPDATTQPKVLGPAGF- 234 (512)
Q Consensus 166 ~A~~~~~y~---~~~g~~v~~wElGNEp~~~-----~~-~~~~s~~~Ya~d~~~-~~~~~~~~~~~~~~~~~~~gp~~~- 234 (512)
=|.-+++|. +++|.+|.+.-+.|||+.. .+ ...|++++-++=.+. |.-.|++..+. .+.++++-+-.
T Consensus 206 yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g--~d~kI~~~D~n~ 283 (496)
T PF02055_consen 206 YADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLG--KDVKILIYDHNR 283 (496)
T ss_dssp HHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT---TTSEEEEEEEEG
T ss_pred HHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCC--CceEEEEEecCC
Confidence 366666665 4579999999999999851 12 346788776543333 66677765321 24567665432
Q ss_pred -CchhHHHHHHhh--hCCCCcceEEEEecCCCCCCChhhhhccCChHHHHHHHHHHHHHHHHHHHhCCCCceEEeccccc
Q 041499 235 -FDKQWFNTFLEK--SGQDVVDGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGA 311 (512)
Q Consensus 235 -~~~~w~~~~l~~--~~~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Etns~ 311 (512)
..++|...+|+. +. ..||++.+|.|-.. +. +..|+. +.+..|++.+|.+|....
T Consensus 284 ~~~~~~~~~il~d~~A~-~yv~GiA~HwY~g~----~~-------~~~l~~-----------~h~~~P~k~l~~TE~~~g 340 (496)
T PF02055_consen 284 DNLPDYADTILNDPEAA-KYVDGIAFHWYGGD----PS-------PQALDQ-----------VHNKFPDKFLLFTEACCG 340 (496)
T ss_dssp GGTTHHHHHHHTSHHHH-TTEEEEEEEETTCS-----H-------CHHHHH-----------HHHHSTTSEEEEEEEESS
T ss_pred cccchhhhhhhcChhhH-hheeEEEEECCCCC----ch-------hhHHHH-----------HHHHCCCcEEEeeccccC
Confidence 235788888863 22 38999999999621 10 111111 123468999999997432
Q ss_pred cCC-CCCCcchHHHHHHHHHHHHHHHhhccceeeeeeccc----CCc-----c----ccccC--CCCccCCcchHHHHHH
Q 041499 312 FNS-GGKYVSHTFADGFWFLDQLGMTSTFNHKVFCRQALI----GGN-----Y----ALLNT--TTFIPNPDYYGSLLWH 375 (512)
Q Consensus 312 ~~~-G~~~vsdtf~aalw~lD~l~~~a~~g~~v~~~q~l~----gg~-----Y----~l~~~--~~~~p~P~Yy~~ll~~ 375 (512)
... +.......+..+..+...+...-.++...++...|. ||. + ..++. +.+..+|.||.+-=|+
T Consensus 341 ~~~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~gw~~WNl~LD~~GGP~~~~n~~d~~iivd~~~~~~~~~p~yY~~gHfS 420 (496)
T PF02055_consen 341 SWNWDTSVDLGSWDRAERYAHDIIGDLNNWVSGWIDWNLALDENGGPNWVGNFCDAPIIVDSDTGEFYKQPEYYAMGHFS 420 (496)
T ss_dssp -STTS-SS-TTHHHHHHHHHHHHHHHHHTTEEEEEEEESEBETTS---TT---B--SEEEEGGGTEEEE-HHHHHHHHHH
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHHhhceeeeeeeeecCCCCCCcccCCCCCceeEEEcCCCeEEEcHHHHHHHHHh
Confidence 211 111111234445445444433334555544444442 322 1 11222 2456789999999999
Q ss_pred Hhc--CCceEEeecCCC-CceEEEEEEecCCCCEEEEEEeCCCCceeEEEEeeC
Q 041499 376 RLM--GKNVLATTQNAS-PYLRVYSHCSKEKPGITVLLINLSNSTSFDVSVIND 426 (512)
Q Consensus 376 ~~~--G~~vl~~~~~~~-~~v~~YA~~~~~~g~v~l~liN~~~~~~~~v~l~~~ 426 (512)
+++ |+..+.++.+.. ..|.+-|... .+|+++|+++|...++. .++|.+.
T Consensus 421 KFV~PGa~RI~st~~~~~~~l~~vAF~n-PDGs~vvVv~N~~~~~~-~~~v~v~ 472 (496)
T PF02055_consen 421 KFVRPGAVRIGSTSSSSDSGLEAVAFLN-PDGSIVVVVLNRGDSDQ-NFSVTVK 472 (496)
T ss_dssp TTS-TT-EEEEEEESSSTTTEEEEEEEE-TTSEEEEEEEE-SSS-E-EEEEEEE
T ss_pred cccCCCCEEEEeeccCCCCceeEEEEEC-CCCCEEEEEEcCCCCcc-ceEEEEe
Confidence 999 555566654422 3677767554 47999999999987764 4445543
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.43 E-value=1.2e-05 Score=79.79 Aligned_cols=218 Identities=16% Similarity=0.102 Sum_probs=112.0
Q ss_pred CcHHHHHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEee
Q 041499 64 KNKILSNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLN 143 (512)
Q Consensus 64 ~~~~l~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN 143 (512)
..+.....++++|.-.||+-=. |..-..+. | +...+ .-...+++++++.|++.|..+|+.+.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~------~~~~~~~~---~-----~~~~~----~~~~~~ld~~v~~a~~~gi~vild~h 83 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVG------WEAYQEPN---P-----GYNYD----ETYLARLDRIVDAAQAYGIYVILDLH 83 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEE------STSTSTTS---T-----TTSBT----HHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCC------HHHhcCCC---C-----Ccccc----HHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4556788889999999996222 21111010 0 00000 11135679999999999999999888
Q ss_pred ccCCCccCCCCCCCcCCCCChHHHHHH----HHH-HHHc--CceeeEeeeccccCCCCCCC---CCCHHHHHHHHHHHHH
Q 041499 144 ALIGRKKSKTDDTLWEGDWNAQNARDL----MKY-TISK--GYKIESYELGNELCASGVSA---KVSAEQYAKDIVALKN 213 (512)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~w~~~~A~~~----~~y-~~~~--g~~v~~wElGNEp~~~~~~~---~~s~~~Ya~d~~~~~~ 213 (512)
...+=.. ... .........++ ++. +... ...+.+|||.|||+....+. ..++..|.+-+++..+
T Consensus 84 ~~~~w~~----~~~--~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~ 157 (281)
T PF00150_consen 84 NAPGWAN----GGD--GYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAID 157 (281)
T ss_dssp ESTTCSS----STS--TTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHH
T ss_pred cCccccc----ccc--ccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHH
Confidence 7411000 000 11111212222 222 2222 23477999999999743221 2255788888999999
Q ss_pred HHHHHCCCCCCCCeEEccCCCCchhHHHHHHhhhC--CCCcceEEEEecCCCCCCChhhhhccCChHHHHHHHHHHHHHH
Q 041499 214 LVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSG--QDVVDGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDIS 291 (512)
Q Consensus 214 ~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~~--~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~ 291 (512)
+||++.|+. +.+++.... .......+.. .. ....+.+++|.|... ................+...++.+.
T Consensus 158 ~Ir~~~~~~---~i~~~~~~~-~~~~~~~~~~-~P~~~~~~~~~~~H~Y~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (281)
T PF00150_consen 158 AIRAADPNH---LIIVGGGGW-GADPDGAAAD-NPNDADNNDVYSFHFYDPY---DFSDQWNPGNWGDASALESSFRAAL 229 (281)
T ss_dssp HHHHTTSSS---EEEEEEHHH-HTBHHHHHHH-STTTTTTSEEEEEEEETTT---CHHTTTSTCSHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcc---eeecCCCcc-ccccchhhhc-CcccccCceeEEeeEeCCC---CcCCccccccchhhhHHHHHHHHHH
Confidence 999997753 344444221 1111111111 11 125789999999832 1110000001111112223333333
Q ss_pred HHHHHhCCCCceEEeccccccCCC
Q 041499 292 ETVKEFGPWSGAWVGEAGGAFNSG 315 (512)
Q Consensus 292 ~~~~~~~~~~~~wl~Etns~~~~G 315 (512)
..+.+ .++|+|+||++.....+
T Consensus 230 ~~~~~--~g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 230 NWAKK--NGKPVVVGEFGWSNNDG 251 (281)
T ss_dssp HHHHH--TTSEEEEEEEESSTTTS
T ss_pred HHHHH--cCCeEEEeCcCCcCCCC
Confidence 33332 46899999999875333
No 9
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=98.32 E-value=2.5e-06 Score=81.43 Aligned_cols=93 Identities=23% Similarity=0.395 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHc------CceeeEeeeccccCCC----C--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEEccCC
Q 041499 166 NARDLMKYTISK------GYKIESYELGNELCAS----G--VSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAG 233 (512)
Q Consensus 166 ~A~~~~~y~~~~------g~~v~~wElGNEp~~~----~--~~~~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~ 233 (512)
-..+|+++.+.+ +..|++|.|.|||++. . .+...+.+++.+.+.+++++||+++|++ +++||..
T Consensus 105 y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a----~v~GP~~ 180 (239)
T PF12891_consen 105 YMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDA----KVFGPVE 180 (239)
T ss_dssp EHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTS----EEEEEEE
T ss_pred HHHHHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCC----eEeechh
Confidence 466778886432 5679999999999982 1 4788899999999999999999999876 8999964
Q ss_pred C---------Cc------------hhHHHHHHhh-------hCCCCcceEEEEecCC
Q 041499 234 F---------FD------------KQWFNTFLEK-------SGQDVVDGLTHHIYNL 262 (512)
Q Consensus 234 ~---------~~------------~~w~~~~l~~-------~~~~~id~vs~H~Y~~ 262 (512)
. .+ ..|+.-||++ .|...+|++++|+||.
T Consensus 181 wgw~~y~~~~~d~~~~~d~~~~g~~~fl~wyL~qm~~~~~~~G~RLLDvlDiH~YPq 237 (239)
T PF12891_consen 181 WGWCGYFSSADDAPGWPDRAAHGNYDFLPWYLDQMKEAEKSTGKRLLDVLDIHYYPQ 237 (239)
T ss_dssp -SHHHHHHTTTHHTTHHHHHHTTT-SHHHHHHHHHHHHHHHHTS-S-SEEEEEE--S
T ss_pred hccceeeccCccccccccccccCCcchHHHHHHHHHHhhhhcCceeeeeeeeeecCC
Confidence 2 11 1256556653 2434899999999985
No 10
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=98.20 E-value=0.00013 Score=72.54 Aligned_cols=213 Identities=13% Similarity=0.117 Sum_probs=119.5
Q ss_pred HHHHHHHHcCceeeEeeeccccCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEEccCCCC-chhHHHHHHh
Q 041499 169 DLMKYTISKGYKIESYELGNELCAS--GVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFF-DKQWFNTFLE 245 (512)
Q Consensus 169 ~~~~y~~~~g~~v~~wElGNEp~~~--~~~~~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~-~~~w~~~~l~ 245 (512)
+.+.|.+..|.++++.-+=||||.- .-+..|+|++-.+=++++..-+.+ ..+++.|+.+. .++|-+..|+
T Consensus 157 ~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~qyl~si~~-------~~rV~~pes~~~~~~~~dp~ln 229 (433)
T COG5520 157 DFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQYLASINA-------EMRVIIPESFKDLPNMSDPILN 229 (433)
T ss_pred HHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHHhhhhhcc-------ccEEecchhccccccccccccc
Confidence 3444566789999999999999973 235678999887766666554432 34888998864 3466655554
Q ss_pred hhC-CCCcceEEEEecCCCCCCChhhhhccCChHHHHHHHHHHHHHHHHHHHhCCCCceEEeccccccCCCCCCcchHHH
Q 041499 246 KSG-QDVVDGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNSGGKYVSHTFA 324 (512)
Q Consensus 246 ~~~-~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Etns~~~~G~~~vsdtf~ 324 (512)
.-. -..||.+.+|.|... ++ ..|..+ . +....+|.+|++|.-.- ...++-.|+
T Consensus 230 Dp~a~a~~~ilg~H~Ygg~--v~-------~~p~~l----------a---k~~~~gKdlwmte~y~~--esd~~s~dr-- 283 (433)
T COG5520 230 DPKALANMDILGTHLYGGQ--VS-------DQPYPL----------A---KQKPAGKDLWMTECYPP--ESDPNSADR-- 283 (433)
T ss_pred CHhHhcccceeEeeecccc--cc-------cchhhH----------h---hCCCcCCceEEeecccC--CCCCCcchH--
Confidence 211 127999999999632 11 011111 1 12245899999996331 111222233
Q ss_pred HHHHHHHHHHHHhhcc-ceeeeeecccCCccccccCCCCccCCcchHHHHHHHhcCCceEEeecCCCCceEEEEE-EecC
Q 041499 325 DGFWFLDQLGMTSTFN-HKVFCRQALIGGNYALLNTTTFIPNPDYYGSLLWHRLMGKNVLATTQNASPYLRVYSH-CSKE 402 (512)
Q Consensus 325 aalw~lD~l~~~a~~g-~~v~~~q~l~gg~Y~l~~~~~~~p~P~Yy~~ll~~~~~G~~vl~~~~~~~~~v~~YA~-~~~~ 402 (512)
.++|...++..+...| ...+.-..+- .+|+......-.- -+=|.+--++.+.+...+.++...+++--+|++ |.+
T Consensus 284 ~~~~~~~hi~~gm~~gg~~ayv~W~i~-~~~~~~~~~gg~~-k~~y~ma~fskf~q~gy~rldat~sp~~nvyvsayvg- 360 (433)
T COG5520 284 EALHVALHIHIGMTEGGFQAYVWWNIR-LDYGGGPNHGGNS-KRGYCMAHFSKFVQNGYVRLDATKSPYGNVYVSAYVG- 360 (433)
T ss_pred HHHHHHHHHHhhccccCccEEEEEEEe-eccCCCcCCCccc-ccceeEeeeeeeccCCceEEecccCccceEEEEEEec-
Confidence 5677777766654433 3444333332 3443333221111 123444455666666633443333343333433 233
Q ss_pred CCCEEEEEEeCCCCc
Q 041499 403 KPGITVLLINLSNST 417 (512)
Q Consensus 403 ~g~v~l~liN~~~~~ 417 (512)
.++++|+.||+....
T Consensus 361 ~nkvvivaink~~~~ 375 (433)
T COG5520 361 PNKVVIVAINKGTYP 375 (433)
T ss_pred CCcEEEEeecccccc
Confidence 578999999997665
No 11
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.00 E-value=0.00013 Score=73.94 Aligned_cols=206 Identities=17% Similarity=0.155 Sum_probs=108.9
Q ss_pred CCcCcHHHHHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEE
Q 041499 61 LDLKNKILSNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTF 140 (512)
Q Consensus 61 ~~l~~~~l~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~ 140 (512)
.+.....+.+++|.-|...||+ -+|.+.. + . +..+.++.-++.+=+++.|.++++
T Consensus 22 ~~G~~~d~~~ilk~~G~N~vRl-------Rvwv~P~------------~--~----g~~~~~~~~~~akrak~~Gm~vll 76 (332)
T PF07745_consen 22 ENGQEKDLFQILKDHGVNAVRL-------RVWVNPY------------D--G----GYNDLEDVIALAKRAKAAGMKVLL 76 (332)
T ss_dssp TTSSB--HHHHHHHTT--EEEE-------EE-SS-T------------T--T----TTTSHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCCCCHHHHHHhcCCCeEEE-------EeccCCc------------c--c----ccCCHHHHHHHHHHHHHCCCeEEE
Confidence 3444566889999999877775 1343310 0 1 123444556777778889999998
Q ss_pred EeeccCCCccCCCCCCCc-CCCCCh----HHHHHHHHHH-------HHcCceeeEeeeccccCC---CCCCCCCCHHHHH
Q 041499 141 GLNALIGRKKSKTDDTLW-EGDWNA----QNARDLMKYT-------ISKGYKIESYELGNELCA---SGVSAKVSAEQYA 205 (512)
Q Consensus 141 glN~~~~~~~~~~~~~~~-~~~w~~----~~A~~~~~y~-------~~~g~~v~~wElGNEp~~---~~~~~~~s~~~Ya 205 (512)
.+-+..-=.. + .++. ...|.. +.+.++-+|+ +..|-....+|||||.+. ...|..-+...++
T Consensus 77 dfHYSD~WaD-P--g~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a 153 (332)
T PF07745_consen 77 DFHYSDFWAD-P--GKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLA 153 (332)
T ss_dssp EE-SSSS--B-T--TB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHH
T ss_pred eecccCCCCC-C--CCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHH
Confidence 8877421000 0 0000 134543 2333344443 356888999999999885 2234455678888
Q ss_pred HHHHHHHHHHHHHCCCCCCCCeEEccCCCCchhHHHHHHhhhCCCCcceEEEEecCCCCCCChhhhhccCChHHHHHHHH
Q 041499 206 KDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVVDGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQ 285 (512)
Q Consensus 206 ~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~~~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~ 285 (512)
+.+..=.+++|++.|+.+.-.-+..|+......|+-+.|.+.+ ...|.+.+++||.-.+ .++.+
T Consensus 154 ~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g-~d~DviGlSyYP~w~~-------------~l~~l-- 217 (332)
T PF07745_consen 154 KLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAG-VDFDVIGLSYYPFWHG-------------TLEDL-- 217 (332)
T ss_dssp HHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTT-GG-SEEEEEE-STTST--------------HHHH--
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcC-CCcceEEEecCCCCcc-------------hHHHH--
Confidence 8888888999998876421111112221112244444444555 3799999999995322 12222
Q ss_pred HHHHHHHHHHHhCCCCceEEeccccccC
Q 041499 286 TYKDISETVKEFGPWSGAWVGEAGGAFN 313 (512)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~wl~Etns~~~ 313 (512)
...++.+.++| +||++|.||+-.+.
T Consensus 218 -~~~l~~l~~ry--~K~V~V~Et~yp~t 242 (332)
T PF07745_consen 218 -KNNLNDLASRY--GKPVMVVETGYPWT 242 (332)
T ss_dssp -HHHHHHHHHHH--T-EEEEEEE---SB
T ss_pred -HHHHHHHHHHh--CCeeEEEecccccc
Confidence 23445555677 58999999986553
No 12
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=97.66 E-value=9.6e-05 Score=60.40 Aligned_cols=74 Identities=26% Similarity=0.256 Sum_probs=41.5
Q ss_pred ceeeEeeeccccCCC-C--C---CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEEccCCCCchhHHHHHHhhhCCCCc
Q 041499 179 YKIESYELGNELCAS-G--V---SAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVV 252 (512)
Q Consensus 179 ~~v~~wElGNEp~~~-~--~---~~~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~~~~~i 252 (512)
.+|.+|||+||+++. . . ......+.|.+-.++..++||+++|+. |..+|.... +... ++......+
T Consensus 9 ~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~---pvt~g~~~~-~~~~----~~~~~~~~~ 80 (88)
T PF12876_consen 9 PRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQ---PVTSGFWGG-DWED----LEQLQAENL 80 (88)
T ss_dssp GGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS----EE--B--S--TTH----HHHS--TT-
T ss_pred CCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCC---cEEeecccC-CHHH----HHHhchhcC
Confidence 468999999994442 1 1 123346788898999999999998864 444332222 1122 222221279
Q ss_pred ceEEEEec
Q 041499 253 DGLTHHIY 260 (512)
Q Consensus 253 d~vs~H~Y 260 (512)
|++|+|.|
T Consensus 81 DvisfH~Y 88 (88)
T PF12876_consen 81 DVISFHPY 88 (88)
T ss_dssp SSEEB-EE
T ss_pred CEEeeecC
Confidence 99999998
No 13
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.30 E-value=0.019 Score=56.47 Aligned_cols=212 Identities=14% Similarity=0.088 Sum_probs=101.9
Q ss_pred cchhhHHHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcCCCCChHH-HHHHHHHH----HHcCceeeEeeeccccCCC
Q 041499 119 LSMNRWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQN-ARDLMKYT----ISKGYKIESYELGNELCAS 193 (512)
Q Consensus 119 ~t~~~~d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~~~w~~~~-A~~~~~y~----~~~g~~v~~wElGNEp~~~ 193 (512)
+.-+..|++.++|++.|.++-.. .+.-... ...|.......+ ...+.+|. ...+..+..|+|.|||...
T Consensus 13 ~n~~~~D~~~~~a~~~gi~v~gH-~l~W~~~-----~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~wdV~NE~~~~ 86 (254)
T smart00633 13 FNFSGADAIVNFAKENGIKVRGH-TLVWHSQ-----TPDWVFNLSKETLLARLENHIKTVVGRYKGKIYAWDVVNEALHD 86 (254)
T ss_pred cChHHHHHHHHHHHHCCCEEEEE-EEeeccc-----CCHhhhcCCHHHHHHHHHHHHHHHHHHhCCcceEEEEeeecccC
Confidence 44466799999999999998532 1111110 112332222222 33445554 2355669999999999863
Q ss_pred CCC---C-CC---CHHHHHHHHHHHHHHHHHHCCCCCCCCeEEccCC--CCc-------hhHHHHHHhhhCCCCcceEEE
Q 041499 194 GVS---A-KV---SAEQYAKDIVALKNLVREMYPDATTQPKVLGPAG--FFD-------KQWFNTFLEKSGQDVVDGLTH 257 (512)
Q Consensus 194 ~~~---~-~~---s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~--~~~-------~~w~~~~l~~~~~~~id~vs~ 257 (512)
+.+ . .+ -+.+|. ....+++++++|+. +++==+- ... ..+.+.+.+ .+. .||+|-+
T Consensus 87 ~~~~~~~~~w~~~~G~~~i---~~af~~ar~~~P~a----~l~~Ndy~~~~~~~k~~~~~~~v~~l~~-~g~-~iDgiGl 157 (254)
T smart00633 87 NGSGLRRSVWYQILGEDYI---EKAFRYAREADPDA----KLFYNDYNTEEPNAKRQAIYELVKKLKA-KGV-PIDGIGL 157 (254)
T ss_pred CCcccccchHHHhcChHHH---HHHHHHHHHhCCCC----EEEEeccCCcCccHHHHHHHHHHHHHHH-CCC-ccceeee
Confidence 210 0 01 012343 24446777887864 3321110 000 123344443 332 5999987
Q ss_pred EecCCCCCCChhhhhccCChHHHHHHHHHHHHHHHHHHHhCCCCceEEeccccccCCCCCCcchHHHHHHHHHHHHHHHh
Q 041499 258 HIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNSGGKYVSHTFADGFWFLDQLGMTS 337 (512)
Q Consensus 258 H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Etns~~~~G~~~vsdtf~aalw~lD~l~~~a 337 (512)
+..... + .+ ++. .+...++.+. + .++||+++|....... +. =..|-++-+.+-.+.
T Consensus 158 Q~H~~~-~-~~-------~~~---~~~~~l~~~~----~--~g~pi~iTE~dv~~~~-----~~-~~qA~~~~~~l~~~~ 213 (254)
T smart00633 158 QSHLSL-G-SP-------NIA---EIRAALDRFA----S--LGLEIQITELDISGYP-----NP-QAQAADYEEVFKACL 213 (254)
T ss_pred eeeecC-C-CC-------CHH---HHHHHHHHHH----H--cCCceEEEEeecCCCC-----cH-HHHHHHHHHHHHHHH
Confidence 432110 1 01 111 1222222222 2 3899999999875421 11 222334445544443
Q ss_pred hc-cceeeeeecccCC-------ccccccCCCCccCCcchH
Q 041499 338 TF-NHKVFCRQALIGG-------NYALLNTTTFIPNPDYYG 370 (512)
Q Consensus 338 ~~-g~~v~~~q~l~gg-------~Y~l~~~~~~~p~P~Yy~ 370 (512)
++ ++..+.-.++..+ .-+|+|.+ +.|+|.|++
T Consensus 214 ~~p~v~gi~~Wg~~d~~~W~~~~~~~L~d~~-~~~kpa~~~ 253 (254)
T smart00633 214 AHPAVTGVTVWGVTDKYSWLDGGAPLLFDAN-YQPKPAYWA 253 (254)
T ss_pred cCCCeeEEEEeCCccCCcccCCCCceeECCC-CCCChhhhc
Confidence 33 2333333333321 12466666 788888764
No 14
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.056 Score=53.07 Aligned_cols=211 Identities=14% Similarity=0.119 Sum_probs=117.2
Q ss_pred CcCcHHHHHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEE
Q 041499 62 DLKNKILSNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFG 141 (512)
Q Consensus 62 ~l~~~~l~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~g 141 (512)
+...+...+.+|+-|..+||+ -+|.+.. ..+ ++.+|- +.-....--++..=++..|.++++.
T Consensus 62 ng~~qD~~~iLK~~GvNyvRl-------RvwndP~--------dsn-gn~ygg--GnnD~~k~ieiakRAk~~GmKVl~d 123 (403)
T COG3867 62 NGVRQDALQILKNHGVNYVRL-------RVWNDPY--------DSN-GNGYGG--GNNDLKKAIEIAKRAKNLGMKVLLD 123 (403)
T ss_pred CChHHHHHHHHHHcCcCeEEE-------EEecCCc--------cCC-CCccCC--CcchHHHHHHHHHHHHhcCcEEEee
Confidence 444556778889999988886 2565421 111 111221 1111112245666677889999987
Q ss_pred eeccCCCc-cCCCCCCCcCCCCChHHH----HHHHHH-------HHHcCceeeEeeeccccCCC---CCCCCCCHHHHHH
Q 041499 142 LNALIGRK-KSKTDDTLWEGDWNAQNA----RDLMKY-------TISKGYKIESYELGNELCAS---GVSAKVSAEQYAK 206 (512)
Q Consensus 142 lN~~~~~~-~~~~~~~~~~~~w~~~~A----~~~~~y-------~~~~g~~v~~wElGNEp~~~---~~~~~~s~~~Ya~ 206 (512)
+-+..-=. +. .+.-...|..-+- +++-+| .++.|....-.|+|||.++- ..|..-+-...++
T Consensus 124 FHYSDfwaDPa---kQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~ 200 (403)
T COG3867 124 FHYSDFWADPA---KQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAA 200 (403)
T ss_pred ccchhhccChh---hcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHH
Confidence 76641100 00 0000123432221 112222 24567888888999999862 2233335566777
Q ss_pred HHHHHHHHHHHHCCCCCCCCeEEccCCCCchhHHHHHHhhhCCCCcceEEEEecCCCCCCChhhhhccCChHHHHHHHHH
Q 041499 207 DIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVVDGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQT 286 (512)
Q Consensus 207 d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~~~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~ 286 (512)
.+.+=.+++|++.|+++.-.-+.-|....-..|.-+=|.+.+- ..|.+...+||.-.| ++. .+
T Consensus 201 L~n~g~~avrev~p~ikv~lHla~g~~n~~y~~~fd~ltk~nv-dfDVig~SyYpyWhg----tl~---------nL--- 263 (403)
T COG3867 201 LLNAGIRAVREVSPTIKVALHLAEGENNSLYRWIFDELTKRNV-DFDVIGSSYYPYWHG----TLN---------NL--- 263 (403)
T ss_pred HHHHHhhhhhhcCCCceEEEEecCCCCCchhhHHHHHHHHcCC-CceEEeeeccccccC----cHH---------HH---
Confidence 7777788888887765322223334444445676554555543 689999989986323 111 11
Q ss_pred HHHHHHHHHHhCCCCceEEecccccc
Q 041499 287 YKDISETVKEFGPWSGAWVGEAGGAF 312 (512)
Q Consensus 287 ~~~~~~~~~~~~~~~~~wl~Etns~~ 312 (512)
-..|..+.++| +|.+.+-|+.-.|
T Consensus 264 ~~nl~dia~rY--~K~VmV~Etay~y 287 (403)
T COG3867 264 TTNLNDIASRY--HKDVMVVETAYTY 287 (403)
T ss_pred HhHHHHHHHHh--cCeEEEEEeccee
Confidence 23455666777 5789999998765
No 15
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.029 Score=57.51 Aligned_cols=181 Identities=13% Similarity=0.173 Sum_probs=102.6
Q ss_pred eeEeeeccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEEccCCCCchhHHHHHHhhhCCCCcceEEEEec
Q 041499 181 IESYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVVDGLTHHIY 260 (512)
Q Consensus 181 v~~wElGNEp~~~~~~~~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~~~~~id~vs~H~Y 260 (512)
..-+++-|||+.. ..-.+|-+.|....+ +.+|.. .+-| .+.+.....|++.. +.||+++.|.|
T Consensus 105 kw~f~~~~~pn~~-----ad~~eyfk~y~~~a~---~~~p~i----~vg~---~w~~e~l~~~~k~~--d~idfvt~~a~ 167 (428)
T COG3664 105 KWPFYSPNEPNLL-----ADKQEYFKLYDATAR---QRAPSI----QVGG---SWNTERLHEFLKKA--DEIDFVTELAN 167 (428)
T ss_pred ecceeecCCCCcc-----cchHHHHHHHHhhhh---ccCcce----eecc---ccCcHHHhhhhhcc--Ccccceeeccc
Confidence 4467999999863 445566554444433 444432 2222 22223334555533 37999999999
Q ss_pred CCCCC-CChhhhhcc-CChHHHHHHHHHHHHHHHHHHHhCCCCceEEeccccccCCCCCCcchHHHHHHHHHHHHHHHhh
Q 041499 261 NLGPG-NDPELINRI-QDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNSGGKYVSHTFADGFWFLDQLGMTST 338 (512)
Q Consensus 261 ~~~~g-~~~~~~~~~-l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Etns~~~~G~~~vsdtf~aalw~lD~l~~~a~ 338 (512)
..... .+....+++ +.+. .......+.+.+.+++++-++|+.+.|||..+ ++..-+-++|++|--.+..|..+..
T Consensus 168 ~~~av~~~~~~~~~~~l~~~--~~~l~~~r~~~d~i~~~~~~~pl~~~~wntlt-~~~~~~n~sy~raa~i~~~Lr~~g~ 244 (428)
T COG3664 168 SVDAVDFSTPGAEEVKLSEL--KRTLEDLRGLKDLIQHHSLGLPLLLTNWNTLT-GPREPTNGSYVRAAYIMRLLREAGS 244 (428)
T ss_pred ccccccccCCCchhhhhhhh--hhhhhHHHHHHHHHHhccCCCcceeecccccC-CCccccCceeehHHHHHHHHHhcCC
Confidence 75321 111111111 1221 23445667788888888889999999999977 4555566777775555554444322
Q ss_pred ccc--------eee---eeec--ccCCccccccCCCCccCCcchHHHHHHHhcCCceEE
Q 041499 339 FNH--------KVF---CRQA--LIGGNYALLNTTTFIPNPDYYGSLLWHRLMGKNVLA 384 (512)
Q Consensus 339 ~g~--------~v~---~~q~--l~gg~Y~l~~~~~~~p~P~Yy~~ll~~~~~G~~vl~ 384 (512)
.-. +.. +.+. ++ +..+|++.- ..-+|.|+.++++.++ |..++.
T Consensus 245 ~v~a~~yW~~sdl~e~~g~~~~~~~-~gfel~~~~-~~rrpa~~~~l~~n~L-g~~~l~ 300 (428)
T COG3664 245 PVDAFGYWTNSDLHEEHGPPEAPFV-GGFELFAPY-GGRRPAWMAALFFNRL-GRTLLS 300 (428)
T ss_pred hhhhhhhhhcccccccCCCcccccc-cceeeeccc-ccchhHHHHHHHHHHH-HHHhhh
Confidence 100 011 1111 11 233454444 3468999999999999 766554
No 16
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.80 E-value=0.17 Score=56.40 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=38.3
Q ss_pred eeeEeeeccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEEccCCCCchhHHHHHHhhhCCCCcceEEEEe
Q 041499 180 KIESYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVVDGLTHHI 259 (512)
Q Consensus 180 ~v~~wElGNEp~~~~~~~~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~~~~~id~vs~H~ 259 (512)
.|..|.+|||+... .+....-++++.+++|+.+|+ ++.-.+-..... ... .... ..+|.+++|.
T Consensus 408 SIi~Ws~gNE~~~~-------~~~~~~~~~~l~~~~k~~Dpt---R~vt~~~~~~~~--~~~---~~~~-~~~Dv~~~N~ 471 (604)
T PRK10150 408 SVVMWSIANEPASR-------EQGAREYFAPLAELTRKLDPT---RPVTCVNVMFAT--PDT---DTVS-DLVDVLCLNR 471 (604)
T ss_pred eEEEEeeccCCCcc-------chhHHHHHHHHHHHHHhhCCC---CceEEEecccCC--ccc---cccc-CcccEEEEcc
Confidence 37799999998641 122233457888899999875 233222110100 000 1111 2699999998
Q ss_pred cCC
Q 041499 260 YNL 262 (512)
Q Consensus 260 Y~~ 262 (512)
|+.
T Consensus 472 Y~~ 474 (604)
T PRK10150 472 YYG 474 (604)
T ss_pred cce
Confidence 863
No 17
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=95.71 E-value=0.12 Score=53.33 Aligned_cols=165 Identities=14% Similarity=0.080 Sum_probs=79.0
Q ss_pred HHHHHhhcCCEEEEEeeccCCCccCCCCCCCc----------CCCCChHHHHHHHHHH---HHcCceeeEeeeccccCCC
Q 041499 127 INDLFNQTGAMMTFGLNALIGRKKSKTDDTLW----------EGDWNAQNARDLMKYT---ISKGYKIESYELGNELCAS 193 (512)
Q Consensus 127 ~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~----------~~~w~~~~A~~~~~y~---~~~g~~v~~wElGNEp~~~ 193 (512)
|++-+++.|++.+..+.-.. +.-|+.++.. ...|-..-|.-|++++ ++.|.++.+.+-=|||+..
T Consensus 109 fL~~Ak~rGV~~f~aFSNSP--P~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 109 FLKAAKERGVNIFEAFSNSP--PWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHHTT---EEEE-SSS---GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHHcCCCeEEEeecCC--CHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCC
Confidence 88999999998877544211 1111101100 0112222344444443 4578999999999999973
Q ss_pred -----CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEEccCCC-C----c--------hhHHHHHHhhhC-------
Q 041499 194 -----GVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGF-F----D--------KQWFNTFLEKSG------- 248 (512)
Q Consensus 194 -----~~~~~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~-~----~--------~~w~~~~l~~~~------- 248 (512)
.-|+.+++++-++-.+.+++.+++.-. ..+|+.++.. . . ..=+..|+....
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL----~t~I~~~Ea~~~~~l~~~~~~~~~r~~~i~~ff~~~s~~yi~~l 262 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGL----STKISACEAGDWEYLYKTDKNDWGRGNQIEAFFNPDSSTYIGDL 262 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-----S-EEEEEEESSGGGGS---S-TTS---HHHHHHSTTSTT--TT-
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCC----CceEEecchhhHHHHhhccCCchhhhhhHHhhcCCCchhhhhcc
Confidence 136778898888889999999988732 2355555432 1 0 122355665332
Q ss_pred CCCcceEEEEecCCCCCCChhhhhccCChHHHHHHHHHHHHHHHHHHHhCCCCceEEeccccc
Q 041499 249 QDVVDGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGA 311 (512)
Q Consensus 249 ~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Etns~ 311 (512)
++.-..|+-|.|..... .+.+...-+.+.+.++++.|+.++|.+|+..-
T Consensus 263 ~~v~~~i~~HsYwt~~~--------------~~~l~~~R~~~~~~~~~~~~~~~~wqtE~~il 311 (384)
T PF14587_consen 263 PNVPNIISGHSYWTDSP--------------WDDLRDIRKQLADKLDKYSPGLKYWQTEYCIL 311 (384)
T ss_dssp TTEEEEEEE--TT-SSS--------------HHHHHHHHHHHHHHHHTTSS--EEEE----S-
T ss_pred ccchhheeecccccCCC--------------HHHHHHHHHHHHHHHHhhCcCCceeeeeeeec
Confidence 22456889999986421 12233344556677788889999999998764
No 18
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=91.78 E-value=1.4 Score=44.28 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=56.5
Q ss_pred HHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeecc-CC
Q 041499 69 SNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNAL-IG 147 (512)
Q Consensus 69 ~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN~~-~~ 147 (512)
+.++|++|.-.||... +-. + ++|+++|.+.|.-++-.+... .+
T Consensus 42 ~~l~k~~G~N~iR~~h-------~p~--------------~---------------~~~~~~cD~~GilV~~e~~~~~~~ 85 (298)
T PF02836_consen 42 LELMKEMGFNAIRTHH-------YPP--------------S---------------PRFYDLCDELGILVWQEIPLEGHG 85 (298)
T ss_dssp HHHHHHTT-SEEEETT-------S----------------S---------------HHHHHHHHHHT-EEEEE-S-BSCT
T ss_pred HHHHHhcCcceEEccc-------ccC--------------c---------------HHHHHHHhhcCCEEEEeccccccC
Confidence 5688999999999843 200 0 689999999999999877652 11
Q ss_pred CccCCCCCC-----CcCCCCC---hHHHHHHHHHHHHcCceeeEeeeccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q 041499 148 RKKSKTDDT-----LWEGDWN---AQNARDLMKYTISKGYKIESYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMY 219 (512)
Q Consensus 148 ~~~~~~~~~-----~~~~~w~---~~~A~~~~~y~~~~g~~v~~wElGNEp~~~~~~~~~s~~~Ya~d~~~~~~~~~~~~ 219 (512)
.... .+ .....|. ..+.+++++..+.++ .|..|.+|||+ .+...++++.+.+|+.+
T Consensus 86 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-SIi~W~~gNE~------------~~~~~~~~l~~~~k~~D 149 (298)
T PF02836_consen 86 SWQD---FGNCNYDADDPEFRENAEQELREMVRRDRNHP-SIIMWSLGNES------------DYREFLKELYDLVKKLD 149 (298)
T ss_dssp SSSS---TSCTSCTTTSGGHHHHHHHHHHHHHHHHTT-T-TEEEEEEEESS------------HHHHHHHHHHHHHHHH-
T ss_pred cccc---CCccccCCCCHHHHHHHHHHHHHHHHcCcCcC-chheeecCccC------------ccccchhHHHHHHHhcC
Confidence 1000 00 0001111 123334444333233 36699999999 34455677888899988
Q ss_pred CC
Q 041499 220 PD 221 (512)
Q Consensus 220 ~~ 221 (512)
|+
T Consensus 150 pt 151 (298)
T PF02836_consen 150 PT 151 (298)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 19
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=91.13 E-value=19 Score=37.21 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=40.1
Q ss_pred CccCCcchHHHHHHHhcCCceEEe--ecCCCCceEEEEEEecCCCCEEEEEEeCCCCceeEEEEe
Q 041499 362 FIPNPDYYGSLLWHRLMGKNVLAT--TQNASPYLRVYSHCSKEKPGITVLLINLSNSTSFDVSVI 424 (512)
Q Consensus 362 ~~p~P~Yy~~ll~~~~~G~~vl~~--~~~~~~~v~~YA~~~~~~g~v~l~liN~~~~~~~~v~l~ 424 (512)
+.-.|-||++--|++++-+....+ ..+.+..|.+-|.- +.+|+-++++.|++.-.. .+.|.
T Consensus 432 fYKQPmfya~~hFSkFl~pGs~Rv~~~i~~~~~ve~~afl-npdGskvvVllnk~s~~~-~~~I~ 494 (518)
T KOG2566|consen 432 FYKQPMFYALGHFSKFLPPGSVRVGHSINQNLDVEATAFL-NPDGSKVVVLLNKNSLDS-PLTIK 494 (518)
T ss_pred HhhccHHHHHHHHhhcCCCCceEeeeeeccccccceeEEE-cCCCcEEEEEeccCCCCC-ceEEe
Confidence 345788899888899984443333 33334455555543 347889999999998764 45554
No 20
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=90.11 E-value=4 Score=41.38 Aligned_cols=193 Identities=17% Similarity=0.232 Sum_probs=90.5
Q ss_pred CcHHHHHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEee
Q 041499 64 KNKILSNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLN 143 (512)
Q Consensus 64 ~~~~l~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN 143 (512)
.-..+++++|..+...+|+ |++. .+.++-...+|+++++++.
T Consensus 14 ~p~~vv~l~ks~~i~~vri---------~d~~-----------------------------~~iL~a~a~S~i~v~v~vp 55 (310)
T PF00332_consen 14 SPCKVVSLLKSNGITKVRI---------YDAD-----------------------------PSILRAFAGSGIEVMVGVP 55 (310)
T ss_dssp -HHHHHHHHHHTT--EEEE---------SS-------------------------------HHHHHHHTTS--EEEEEE-
T ss_pred CHHHHHHHHHhcccccEEe---------ecCc-----------------------------HHHHHHHhcCCceeeeccC
Confidence 5667899999999888874 3321 2344444568999998887
Q ss_pred ccCCCccCCCCCCCcCCCCChHHHHHHHHHHHH---cCceeeEeeeccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q 041499 144 ALIGRKKSKTDDTLWEGDWNAQNARDLMKYTIS---KGYKIESYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMYP 220 (512)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~---~g~~v~~wElGNEp~~~~~~~~~s~~~Ya~d~~~~~~~~~~~~~ 220 (512)
-..-... .-+...|..|++.-.. ..-++++.-+|||.-.. ........-.+.+++++++.-
T Consensus 56 N~~l~~l----------a~~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~-----~~~~~lvpAm~ni~~aL~~~~- 119 (310)
T PF00332_consen 56 NEDLASL----------ASSQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTG-----TDNAYLVPAMQNIHNALTAAG- 119 (310)
T ss_dssp GGGHHHH----------HHHHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCC-----SGGGGHHHHHHHHHHHHHHTT-
T ss_pred hHHHHHh----------ccCHHHHhhhhhhcccccCcccceeeeecccccccC-----ccceeeccHHHHHHHHHHhcC-
Confidence 2111000 0024567777774322 12369999999998642 111145566677888887651
Q ss_pred CCCCCCeEEcc------------CC-CCchhH------HHHHHhhhCCCCcceEEEEecCC-----CCCCCh---hhh--
Q 041499 221 DATTQPKVLGP------------AG-FFDKQW------FNTFLEKSGQDVVDGLTHHIYNL-----GPGNDP---ELI-- 271 (512)
Q Consensus 221 ~~~~~~~~~gp------------~~-~~~~~w------~~~~l~~~~~~~id~vs~H~Y~~-----~~g~~~---~~~-- 271 (512)
-..++++.-| +. .+...+ +.+||+..+. .+....||. ++..-+ +..
T Consensus 120 -L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~fL~~t~s----pf~vN~yPyfa~~~~~~~~~l~yAlf~~ 194 (310)
T PF00332_consen 120 -LSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLKFLDGTNS----PFMVNVYPYFAYQNNPQNISLDYALFQP 194 (310)
T ss_dssp --TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHHHHHHHT------EEEE--HHHHHHHSTTTS-HHHHTT-S
T ss_pred -cCCcceeccccccccccccCCCccCcccccchhhhhHHHHHhhccCC----CceeccchhhhccCCcccCCcccccccc
Confidence 1124455533 11 122333 3467776652 233333421 211000 000
Q ss_pred -hccCCh--HHHHHHHHHHHHHHHHHHHhC-CCCceEEeccccccCCC
Q 041499 272 -NRIQDP--YYLDQIAQTYKDISETVKEFG-PWSGAWVGEAGGAFNSG 315 (512)
Q Consensus 272 -~~~l~~--~~l~~~~~~~~~~~~~~~~~~-~~~~~wl~Etns~~~~G 315 (512)
....|+ .+-.-+..+++.+..++.+.+ +++++|++|||-.+.|+
T Consensus 195 ~~~~~D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~ 242 (310)
T PF00332_consen 195 NSGVVDGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPSAGD 242 (310)
T ss_dssp SS-SEETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---SSSS
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccccCCC
Confidence 000011 111123345666776666654 67899999999876444
No 21
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=89.70 E-value=17 Score=36.59 Aligned_cols=127 Identities=18% Similarity=0.275 Sum_probs=57.3
Q ss_pred HHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcCCCCChHHHHHHHHHHH-HcCc-eeeEeeeccccCCCCCCCCCCHH
Q 041499 125 DEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTI-SKGY-KIESYELGNELCASGVSAKVSAE 202 (512)
Q Consensus 125 d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~-~~g~-~v~~wElGNEp~~~~~~~~~s~~ 202 (512)
|++|+.+...|.=+|+.||.-... ++ ..+....|+...-....+-.. -.+| ++.++=+|||.-.. ..+..+.
T Consensus 82 d~CM~~~~~aGIYvi~Dl~~p~~s-I~---r~~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~--~~~t~aa 155 (314)
T PF03198_consen 82 DECMSAFADAGIYVILDLNTPNGS-IN---RSDPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVIND--ASNTNAA 155 (314)
T ss_dssp HHHHHHHHHTT-EEEEES-BTTBS------TTS------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-S--TT-GGGH
T ss_pred HHHHHHHHhCCCEEEEecCCCCcc-cc---CCCCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecC--CCCcccH
Confidence 899999999999999999976332 21 122224676543332222111 1344 57799999998642 1233355
Q ss_pred HHHHH-HHHHHHHHHHHCCCCCCCCeEEccCCCCchhH---HHHHHhhhCC--CCcceEEEEecCC
Q 041499 203 QYAKD-IVALKNLVREMYPDATTQPKVLGPAGFFDKQW---FNTFLEKSGQ--DVVDGLTHHIYNL 262 (512)
Q Consensus 203 ~Ya~d-~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w---~~~~l~~~~~--~~id~vs~H~Y~~ 262 (512)
.|.+- .|..++.|++. ..+.+-+|-+.+...++ +..+|. ++. ..+|++.+-.|-+
T Consensus 156 p~vKAavRD~K~Yi~~~----~~R~IPVGYsaaD~~~~r~~~a~Yl~-Cg~~~~~iDf~g~N~Y~W 216 (314)
T PF03198_consen 156 PYVKAAVRDMKAYIKSK----GYRSIPVGYSAADDAEIRQDLANYLN-CGDDDERIDFFGLNSYEW 216 (314)
T ss_dssp HHHHHHHHHHHHHHHHS----SS----EEEEE---TTTHHHHHHHTT-BTT-----S-EEEEE---
T ss_pred HHHHHHHHHHHHHHHhc----CCCCCceeEEccCChhHHHHHHHHhc-CCCcccccceeeecccee
Confidence 56543 33445555543 12334455444322222 334443 332 2799999999975
No 22
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=89.20 E-value=11 Score=37.09 Aligned_cols=151 Identities=16% Similarity=0.190 Sum_probs=80.7
Q ss_pred HHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcCCCCChHHHHHHHHHHHHcCc-eeeEeeeccccCCCCCCCCCCHHH
Q 041499 125 DEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISKGY-KIESYELGNELCASGVSAKVSAEQ 203 (512)
Q Consensus 125 d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~~g~-~v~~wElGNEp~~~~~~~~~s~~~ 203 (512)
+.+...+.+.|.++++|+=....- ..+.+. ..+..|-...++ .|..+-+|||.=. +...++++
T Consensus 90 e~v~pAa~~~g~kv~lGiw~tdd~------------~~~~~~-til~ay~~~~~~d~v~~v~VGnEal~---r~~~tasq 153 (305)
T COG5309 90 ENVLPAAEASGFKVFLGIWPTDDI------------HDAVEK-TILSAYLPYNGWDDVTTVTVGNEALN---RNDLTASQ 153 (305)
T ss_pred hhhHHHHHhcCceEEEEEeeccch------------hhhHHH-HHHHHHhccCCCCceEEEEechhhhh---cCCCCHHH
Confidence 445556778898999888765321 001110 122333333344 4889999999743 34678999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCeEEccCCCCchhH--HHHHHhhhCCCCcceEE--EEecCCCCCCChhhhhccCChHH
Q 041499 204 YAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQW--FNTFLEKSGQDVVDGLT--HHIYNLGPGNDPELINRIQDPYY 279 (512)
Q Consensus 204 Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w--~~~~l~~~~~~~id~vs--~H~Y~~~~g~~~~~~~~~l~~~~ 279 (512)
.++...+.|.++++.-= .+ .++-.+... .| ..++.+ ..|++. .|.|..+.. ..+.. -.+
T Consensus 154 l~~~I~~vrsav~~agy---~g-pV~T~dsw~--~~~~np~l~~-----~SDfia~N~~aYwd~~~-----~a~~~-~~f 216 (305)
T COG5309 154 LIEYIDDVRSAVKEAGY---DG-PVTTVDSWN--VVINNPELCQ-----ASDFIAANAHAYWDGQT-----VANAA-GTF 216 (305)
T ss_pred HHHHHHHHHHHHHhcCC---CC-ceeecccce--eeeCChHHhh-----hhhhhhcccchhccccc-----hhhhh-hHH
Confidence 99988899999986411 11 222222210 11 122322 345554 466764311 11111 122
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEeccccccCC
Q 041499 280 LDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNS 314 (512)
Q Consensus 280 l~~~~~~~~~~~~~~~~~~~~~~~wl~Etns~~~~ 314 (512)
+ ..+++.++. ..+..+++|++|||--..|
T Consensus 217 ~---~~q~e~vqs---a~g~~k~~~v~EtGWPS~G 245 (305)
T COG5309 217 L---LEQLERVQS---ACGTKKTVWVTETGWPSDG 245 (305)
T ss_pred H---HHHHHHHHH---hcCCCccEEEeeccCCCCC
Confidence 2 233444443 3344589999999976654
No 23
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=73.30 E-value=39 Score=30.91 Aligned_cols=91 Identities=16% Similarity=0.296 Sum_probs=56.5
Q ss_pred hhHHHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcC---CCCChHHHHHHHHHH-HH--cCceeeEeeeccccCCCCC
Q 041499 122 NRWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWE---GDWNAQNARDLMKYT-IS--KGYKIESYELGNELCASGV 195 (512)
Q Consensus 122 ~~~d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~---~~w~~~~A~~~~~y~-~~--~g~~v~~wElGNEp~~~~~ 195 (512)
+-.+.+++.|++.|.++++||++... .|. ..|.......+++.. .. +.-.+++|=|-+|++..
T Consensus 65 d~l~~~L~~A~~~Gmkv~~Gl~~~~~---------~w~~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~-- 133 (166)
T PF14488_consen 65 DLLEMILDAADKYGMKVFVGLYFDPD---------YWDQGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDY-- 133 (166)
T ss_pred cHHHHHHHHHHHcCCEEEEeCCCCch---------hhhccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCc--
Confidence 45699999999999999999998632 122 112111111222211 11 12269999999999863
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEEcc
Q 041499 196 SAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGP 231 (512)
Q Consensus 196 ~~~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp 231 (512)
++.. .+.++.+.+.++++.+ .+|..+.|
T Consensus 134 --~~~~---~~~~~~l~~~lk~~s~---~~Pv~ISp 161 (166)
T PF14488_consen 134 --NWNA---PERFALLGKYLKQISP---GKPVMISP 161 (166)
T ss_pred --ccch---HHHHHHHHHHHHHhCC---CCCeEEec
Confidence 2222 4456778888988865 35677766
No 24
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=71.73 E-value=1.8e+02 Score=32.72 Aligned_cols=184 Identities=14% Similarity=0.158 Sum_probs=74.1
Q ss_pred HHcCceeeEeeeccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEEccCCCCchhHHHHHHhhh-CCCCcc
Q 041499 175 ISKGYKIESYELGNELCASGVSAKVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKS-GQDVVD 253 (512)
Q Consensus 175 ~~~g~~v~~wElGNEp~~~~~~~~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~-~~~~id 253 (512)
+.+|..|.|..+.||=. + ..+|. +.+|+.+++.- -.+.++++.+.... .+...++... -.+.||
T Consensus 168 ~~~gl~idYvg~~NEr~-------~-~~~~i---k~lr~~l~~~g---y~~vkiva~D~~~~-~~~~~m~~D~~l~~avd 232 (669)
T PF02057_consen 168 KTHGLDIDYVGIWNERG-------F-DVNYI---KWLRKALNSNG---YNKVKIVAADNNWE-SISDDMLSDPELRNAVD 232 (669)
T ss_dssp HHH-----EE-S-TTS-----------HHHH---HHHHHHHHHTT----TT-EEEEEEE-ST-THHHHHHH-HHHHHH--
T ss_pred HHhCCCceEechhhccC-------C-ChhHH---HHHHHHHhhcc---ccceEEEEeCCCcc-chhhhhhcCHHHHhccc
Confidence 45799999999999974 2 23564 45677777641 13569999886532 2333433211 012689
Q ss_pred eEEEEecCCCCCCChhhhhccCChHHHHHHHHHHHHHHHHHHHhCCCCceEEeccccccCCCCCCcchHHHHHHHHHHHH
Q 041499 254 GLTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNSGGKYVSHTFADGFWFLDQL 333 (512)
Q Consensus 254 ~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Etns~~~~G~~~vsdtf~aalw~lD~l 333 (512)
++..| |+.. +. .. . .+.. +||+|-.|-.+-++ +...++-| +..|
T Consensus 233 vig~H-Y~~~---~~-------~~--------~-------a~~~--~K~lW~SE~~s~~~-------~~~g~g~~-ar~l 276 (669)
T PF02057_consen 233 VIGYH-YPGT---YS-------SK--------N-------AKLT--GKPLWSSEDYSTFN-------YNVGAGCW-ARIL 276 (669)
T ss_dssp EEEEE-S-TT-------------H--------H-------HHHH--T-EEEEEEEE-S-T-------THHHHHHH-HHHH
T ss_pred Eeccc-cCCC---Cc-------HH--------H-------HHHh--CCCeEEcCCccccc-------CcCchHHH-HHHH
Confidence 99999 4421 10 00 0 0111 69999999655432 22233332 2222
Q ss_pred HHH-hhccceeeeeecccCCccccccCC-------------CCccCCcchHHHHHHHhcCC--ceEEeecCCCCceEEEE
Q 041499 334 GMT-STFNHKVFCRQALIGGNYALLNTT-------------TFIPNPDYYGSLLWHRLMGK--NVLATTQNASPYLRVYS 397 (512)
Q Consensus 334 ~~~-a~~g~~v~~~q~l~gg~Y~l~~~~-------------~~~p~P~Yy~~ll~~~~~G~--~vl~~~~~~~~~v~~YA 397 (512)
-.. ..-....++-|.+|++-|.-+... .+...+..|+..=+.+|.-. +.++.. ..-..-..|.
T Consensus 277 n~~yv~g~mT~~I~w~lVasyYp~lpy~~~gL~~A~ePWSG~Y~v~~~iWv~AHtTQFt~pGW~YL~~~-G~l~~gGSYV 355 (669)
T PF02057_consen 277 NRNYVNGRMTAYINWPLVASYYPGLPYSRKGLMTANEPWSGHYEVDSPIWVTAHTTQFTQPGWRYLDSV-GHLRGGGSYV 355 (669)
T ss_dssp HHHHHHH--SEEEEE-SEE-S-TTSTTTT-SSCE---TTT---B--HHHHHHHHHHTT--TT-EEES---EE-TTS-EEE
T ss_pred HhhhhccceEEEEeehhhhhhcCCCCCCCccceEecCCcccceEecceeeeeeehhccCCCCeEEccCc-cccCCCcceE
Confidence 111 111233566788888666322211 13456677887777777533 333321 0012223444
Q ss_pred EEecCCCCEEEEE
Q 041499 398 HCSKEKPGITVLL 410 (512)
Q Consensus 398 ~~~~~~g~v~l~l 410 (512)
..++..|.+++++
T Consensus 356 tLtd~~gn~tiii 368 (669)
T PF02057_consen 356 TLTDGTGNYTIII 368 (669)
T ss_dssp EEE-SSS-EEEEE
T ss_pred EeecCCCCceEEE
Confidence 4444345565554
No 25
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=71.22 E-value=98 Score=29.58 Aligned_cols=108 Identities=24% Similarity=0.295 Sum_probs=68.6
Q ss_pred HHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcCCCCChHHHHHHHHHHHHcCceeeEeeeccccCCCCCCCCCCHHHH
Q 041499 125 DEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISKGYKIESYELGNELCASGVSAKVSAEQY 204 (512)
Q Consensus 125 d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~~g~~v~~wElGNEp~~~~~~~~~s~~~Y 204 (512)
.++-..+++.|.. |+++|.++.= ..|... ...+|..+++|++.-|-+-.-..-=|. +++.+.....++.
T Consensus 52 a~vka~Aek~Gl~-IvSINAlypF-------n~wt~~-~~a~a~~la~yA~acGA~aLvlcPlNd--~s~~~~~vr~~~l 120 (272)
T COG4130 52 AEVKALAEKAGLT-IVSINALYPF-------NEWTEE-RVAEARGLADYAAACGAKALVLCPLND--GSWPGTAVRREDL 120 (272)
T ss_pred HHHHHHHHHcCcE-EEEeeccccc-------cccChH-HHHHHHHHHHHHHhcCCceEEEEeccC--CCCCCcccchHHH
Confidence 5677789999987 4589988752 122221 256788999999877766334444454 3334556678888
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCeEEccCCCC-----chhHHHHHHhhhC
Q 041499 205 AKDIVALKNLVREMYPDATTQPKVLGPAGFF-----DKQWFNTFLEKSG 248 (512)
Q Consensus 205 a~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~-----~~~w~~~~l~~~~ 248 (512)
..-.++++-++++..-. -++-|=++. ...|-.+.+.+.+
T Consensus 121 v~AlkaLkpil~~~gi~-----GLVEPLGF~~csLRsk~eA~~aI~aa~ 164 (272)
T COG4130 121 VEALKALKPILDEYGIT-----GLVEPLGFRVCSLRSKAEAAEAIRAAG 164 (272)
T ss_pred HHHHHHhhHHHHHhCcc-----ccccccCchhhhhhhHHHHHHHHHHhC
Confidence 88888888888876211 245554441 3457666666554
No 26
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=70.11 E-value=19 Score=37.51 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=33.6
Q ss_pred HHHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeec
Q 041499 68 LSNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNA 144 (512)
Q Consensus 68 l~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN~ 144 (512)
-+.++|++|.-.||+|=- .|.. .+|+ .+.|.| +.+|.+++.+++.|.++++++.-
T Consensus 15 d~~~m~~~G~n~vri~~~-----~W~~-lEP~---------eG~ydF-------~~lD~~l~~a~~~Gi~viL~~~~ 69 (374)
T PF02449_consen 15 DLRLMKEAGFNTVRIGEF-----SWSW-LEPE---------EGQYDF-------SWLDRVLDLAAKHGIKVILGTPT 69 (374)
T ss_dssp HHHHHHHHT-SEEEE-CC-----EHHH-H-SB---------TTB----------HHHHHHHHHHHCTT-EEEEEECT
T ss_pred HHHHHHHcCCCEEEEEEe-----chhh-ccCC---------CCeeec-------HHHHHHHHHHHhccCeEEEEecc
Confidence 356778899999998642 3422 1111 122444 45799999999999999998863
No 27
>TIGR03356 BGL beta-galactosidase.
Probab=69.18 E-value=10 Score=40.31 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=63.8
Q ss_pred HHHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEee-ccC
Q 041499 68 LSNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLN-ALI 146 (512)
Q Consensus 68 l~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN-~~~ 146 (512)
=+.++|.+|...+|++=.++-..- .+.+ . .++. .-+..+++.+-+++.|.++|++|. +..
T Consensus 59 Di~l~~~~G~~~~R~si~Wsri~p--~g~~----~---~n~~----------~~~~y~~~i~~l~~~gi~pivtL~Hfd~ 119 (427)
T TIGR03356 59 DVALMKELGVDAYRFSIAWPRIFP--EGTG----P---VNPK----------GLDFYDRLVDELLEAGIEPFVTLYHWDL 119 (427)
T ss_pred HHHHHHHcCCCeEEcccchhhccc--CCCC----C---cCHH----------HHHHHHHHHHHHHHcCCeeEEeeccCCc
Confidence 367888999999998765433211 0000 0 0000 124568999999999999999996 221
Q ss_pred CCccCCCCCCCcCCCCC-hHHHHHHHHHHH----HcCceeeEeeeccccCC
Q 041499 147 GRKKSKTDDTLWEGDWN-AQNARDLMKYTI----SKGYKIESYELGNELCA 192 (512)
Q Consensus 147 ~~~~~~~~~~~~~~~w~-~~~A~~~~~y~~----~~g~~v~~wElGNEp~~ 192 (512)
.... .+ .+.|. +.....+++|++ ..+..|++|+.=|||+.
T Consensus 120 P~~l-----~~-~gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 120 PQAL-----ED-RGGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred cHHH-----Hh-cCCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 1100 00 14554 455677888874 46778999999999995
No 28
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=67.82 E-value=1.5e+02 Score=30.67 Aligned_cols=27 Identities=11% Similarity=0.195 Sum_probs=20.8
Q ss_pred hhHHHHHHHHhhcCCEEEEEeeccCCC
Q 041499 122 NRWDEINDLFNQTGAMMTFGLNALIGR 148 (512)
Q Consensus 122 ~~~d~~~~f~~~~G~~~i~glN~~~~~ 148 (512)
.++.+=.+-|+..|.++++.|.-+.|.
T Consensus 90 Tqi~~di~~CQS~GiKVlLSLGG~~Gn 116 (568)
T KOG4701|consen 90 TQIETDIQVCQSNGIKVLLSLGGYNGN 116 (568)
T ss_pred chhhhHHHHHHhcCeEEEEeccCcccc
Confidence 345666778999999999988766554
No 29
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=67.24 E-value=9.1 Score=31.06 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=13.0
Q ss_pred CceEEcCceEEEEEe
Q 041499 489 SPITVAPHSIVFATL 503 (512)
Q Consensus 489 ~~i~lpp~S~~f~vl 503 (512)
..++|||+|..++.+
T Consensus 79 ~~~~lp~~s~~vl~~ 93 (95)
T PF02806_consen 79 ITVTLPPYSALVLKL 93 (95)
T ss_dssp EEEEESTTEEEEEEE
T ss_pred EEEEECCCEEEEEEE
Confidence 478999999998876
No 30
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=66.05 E-value=20 Score=28.39 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=19.0
Q ss_pred CceEEEEEEecCCCCEEEEEEeCCCCceeEEEE
Q 041499 391 PYLRVYSHCSKEKPGITVLLINLSNSTSFDVSV 423 (512)
Q Consensus 391 ~~v~~YA~~~~~~g~v~l~liN~~~~~~~~v~l 423 (512)
.++-+|+-+. ++.-.++++|.++.+. ++++
T Consensus 9 ~gvYvYfR~~--~~~tVmVilN~n~~~~-~ldl 38 (78)
T PF10438_consen 9 DGVYVYFRYY--DGKTVMVILNKNDKEQ-TLDL 38 (78)
T ss_dssp TTEEEEEEEE--SSEEEEEEEE-SSS-E-EEEG
T ss_pred CCEEEEEEEc--CCCEEEEEEcCCCCCe-EEcH
Confidence 5677787664 4667788999998773 3443
No 31
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=55.02 E-value=51 Score=39.26 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=45.0
Q ss_pred HHHHHHHhhcCCEEEEEeeccCCC-ccCCCCCCCc---CCCCCh---HHHHHHHHHHHHcCceeeEeeeccccCCCCCCC
Q 041499 125 DEINDLFNQTGAMMTFGLNALIGR-KKSKTDDTLW---EGDWNA---QNARDLMKYTISKGYKIESYELGNELCASGVSA 197 (512)
Q Consensus 125 d~~~~f~~~~G~~~i~glN~~~~~-~~~~~~~~~~---~~~w~~---~~A~~~~~y~~~~g~~v~~wElGNEp~~~~~~~ 197 (512)
..|+++|.+.|.-++=-.|+.... ... .+..+ ...|.. .+++++++.-+. .-.|..|.+|||... |
T Consensus 381 ~~fydlcDe~GllV~dE~~~e~~g~~~~--~~~~~~~~~p~~~~~~~~~~~~mV~RdrN-HPSIi~WslGNE~~~---g- 453 (1021)
T PRK10340 381 PRFYELCDIYGLFVMAETDVESHGFANV--GDISRITDDPQWEKVYVDRIVRHIHAQKN-HPSIIIWSLGNESGY---G- 453 (1021)
T ss_pred HHHHHHHHHCCCEEEECCcccccCcccc--cccccccCCHHHHHHHHHHHHHHHHhCCC-CCEEEEEECccCccc---c-
Confidence 689999999999888766643110 000 00000 011311 223333332211 224779999999832 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCC
Q 041499 198 KVSAEQYAKDIVALKNLVREMYPD 221 (512)
Q Consensus 198 ~~s~~~Ya~d~~~~~~~~~~~~~~ 221 (512)
..++++.+++|+.+|+
T Consensus 454 --------~~~~~~~~~~k~~Dpt 469 (1021)
T PRK10340 454 --------CNIRAMYHAAKALDDT 469 (1021)
T ss_pred --------HHHHHHHHHHHHhCCC
Confidence 2356788999999875
No 32
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=53.60 E-value=49 Score=39.36 Aligned_cols=82 Identities=16% Similarity=0.151 Sum_probs=44.5
Q ss_pred HHHHHHHhhcCCEEEEEeeccC-CCccCCCCCCCcCCCCChHHHHHHHHHHH--HcCc-eeeEeeeccccCCCCCCCCCC
Q 041499 125 DEINDLFNQTGAMMTFGLNALI-GRKKSKTDDTLWEGDWNAQNARDLMKYTI--SKGY-KIESYELGNELCASGVSAKVS 200 (512)
Q Consensus 125 d~~~~f~~~~G~~~i~glN~~~-~~~~~~~~~~~~~~~w~~~~A~~~~~y~~--~~g~-~v~~wElGNEp~~~~~~~~~s 200 (512)
++|+++|.+.|.-++=-+|+.. +-.... .......|.. ...+.++... .++. .|..|.+|||+.. +
T Consensus 397 p~fydlcDe~GilV~dE~~~e~hg~~~~~--~~~~dp~~~~-~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~---g---- 466 (1027)
T PRK09525 397 PLWYELCDRYGLYVVDEANIETHGMVPMN--RLSDDPRWLP-AMSERVTRMVQRDRNHPSIIIWSLGNESGH---G---- 466 (1027)
T ss_pred HHHHHHHHHcCCEEEEecCccccCCcccc--CCCCCHHHHH-HHHHHHHHHHHhCCCCCEEEEEeCccCCCc---C----
Confidence 6899999999998887776521 100000 0000011311 1222222221 1222 4779999999842 2
Q ss_pred HHHHHHHHHHHHHHHHHHCCC
Q 041499 201 AEQYAKDIVALKNLVREMYPD 221 (512)
Q Consensus 201 ~~~Ya~d~~~~~~~~~~~~~~ 221 (512)
..++++.+++|+.+|+
T Consensus 467 -----~~~~~l~~~~k~~Dpt 482 (1027)
T PRK09525 467 -----ANHDALYRWIKSNDPS 482 (1027)
T ss_pred -----hhHHHHHHHHHhhCCC
Confidence 1245677889998875
No 33
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=49.80 E-value=47 Score=35.87 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=64.5
Q ss_pred HHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEee-ccCC
Q 041499 69 SNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLN-ALIG 147 (512)
Q Consensus 69 ~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN-~~~~ 147 (512)
+.|+|.||-...|++=+++=- .|.... ..+ |+ -| -+..+++.+-+.+.|.+|+++|. +...
T Consensus 75 I~Lm~elG~~~yRfSIsWsRI---~P~G~~--~~~---N~---~g-------l~~Y~~lid~l~~~GI~P~vTL~H~dlP 136 (477)
T PRK15014 75 IKLFAEMGFKCFRTSIAWTRI---FPKGDE--AQP---NE---EG-------LKFYDDMFDELLKYNIEPVITLSHFEMP 136 (477)
T ss_pred HHHHHHcCCCEEEecccceee---ccCCCC--CCC---CH---HH-------HHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 688899999888887654321 111000 000 11 11 13458899999999999999987 2211
Q ss_pred CccCCCCCCCcCCCC-ChHHHHHHHHHH----HHcCceeeEeeeccccCC
Q 041499 148 RKKSKTDDTLWEGDW-NAQNARDLMKYT----ISKGYKIESYELGNELCA 192 (512)
Q Consensus 148 ~~~~~~~~~~~~~~w-~~~~A~~~~~y~----~~~g~~v~~wElGNEp~~ 192 (512)
-.. .+--+.| ++..+..+++|| +..|.+|++|--=|||+.
T Consensus 137 ~~L-----~~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~ 181 (477)
T PRK15014 137 LHL-----VQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINN 181 (477)
T ss_pred HHH-----HHhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCccc
Confidence 000 0001567 566678889997 457889999999999983
No 34
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=43.96 E-value=3.6e+02 Score=27.32 Aligned_cols=219 Identities=15% Similarity=0.097 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHhhcCCEEEEEeec-cCCCccCCCCCCCcCC---CCChHH---HHHH-HHHH----HHcC--ceeeEeee
Q 041499 121 MNRWDEINDLFNQTGAMMTFGLNA-LIGRKKSKTDDTLWEG---DWNAQN---ARDL-MKYT----ISKG--YKIESYEL 186 (512)
Q Consensus 121 ~~~~d~~~~f~~~~G~~~i~glN~-~~~~~~~~~~~~~~~~---~w~~~~---A~~~-~~y~----~~~g--~~v~~wEl 186 (512)
-+.-|++.+||++.|.++---.=+ ... ..+|.. .+++.+ .+.. .++. ...+ .+|..|.|
T Consensus 58 ~~~~D~~~~~a~~~g~~vrGH~LvW~~~-------~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDV 130 (320)
T PF00331_consen 58 FESADAILDWARENGIKVRGHTLVWHSQ-------TPDWVFNLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDV 130 (320)
T ss_dssp -HHHHHHHHHHHHTT-EEEEEEEEESSS-------S-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEE
T ss_pred ccchhHHHHHHHhcCcceeeeeEEEccc-------ccceeeeccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEE
Confidence 345699999999999987633222 111 122321 234332 2222 2332 2345 47999999
Q ss_pred ccccCCC-C--CCCCCCH--HHHHHHHHH-HHHHHHHHCCCCCCCCeEEccCCC--Cc------hhHHHHHHhhhCCCCc
Q 041499 187 GNELCAS-G--VSAKVSA--EQYAKDIVA-LKNLVREMYPDATTQPKVLGPAGF--FD------KQWFNTFLEKSGQDVV 252 (512)
Q Consensus 187 GNEp~~~-~--~~~~~s~--~~Ya~d~~~-~~~~~~~~~~~~~~~~~~~gp~~~--~~------~~w~~~~l~~~~~~~i 252 (512)
=|||=.. + .+-.-+. +.++.+|.+ ..++.++.+|+. +++-=+-. .. ....+.+. +.|- .|
T Consensus 131 vNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a----~L~~NDy~~~~~~k~~~~~~lv~~l~-~~gv-pI 204 (320)
T PF00331_consen 131 VNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREADPNA----KLFYNDYNIESPAKRDAYLNLVKDLK-ARGV-PI 204 (320)
T ss_dssp EES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHTTS----EEEEEESSTTSTHHHHHHHHHHHHHH-HTTH-CS
T ss_pred eeecccCCCccccccCChhhhcccHhHHHHHHHHHHHhCCCc----EEEeccccccchHHHHHHHHHHHHHH-hCCC-cc
Confidence 9998642 1 1111111 112222222 234455555654 44422111 01 12333333 3332 59
Q ss_pred ceEEEEecCCCCCCChhhhhccCChHHHHHHHHHHHHHHHHHHHhCCCCceEEeccccccCCCCCCcchHHHHHHHHHHH
Q 041499 253 DGLTHHIYNLGPGNDPELINRIQDPYYLDQIAQTYKDISETVKEFGPWSGAWVGEAGGAFNSGGKYVSHTFADGFWFLDQ 332 (512)
Q Consensus 253 d~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~wl~Etns~~~~G~~~vsdtf~aalw~lD~ 332 (512)
|+|-+...... + . .++ .+...++.+. .-++|++|||...............-..|-++-+.
T Consensus 205 dgIG~Q~H~~~-~-~--------~~~---~i~~~l~~~~------~~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~ 265 (320)
T PF00331_consen 205 DGIGLQSHFDA-G-Y--------PPE---QIWNALDRFA------SLGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDF 265 (320)
T ss_dssp -EEEEEEEEET-T-S--------SHH---HHHHHHHHHH------TTTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHH
T ss_pred ceechhhccCC-C-C--------CHH---HHHHHHHHHH------HcCCceEEEeeeecCCCCCcchHHHHHHHHHHHHH
Confidence 99986322211 1 1 011 1221222221 34799999998765432221111223445678888
Q ss_pred HHHHhhcc---ceeeeeecccC------C---cc-ccccCCCCccCCcchHHH
Q 041499 333 LGMTSTFN---HKVFCRQALIG------G---NY-ALLNTTTFIPNPDYYGSL 372 (512)
Q Consensus 333 l~~~a~~g---~~v~~~q~l~g------g---~Y-~l~~~~~~~p~P~Yy~~l 372 (512)
+-++.++. +..+.-.++.. . ++ .|+|.+ +.|+|-||+.+
T Consensus 266 ~~~~~~~~~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~-~~~Kpa~~~~~ 317 (320)
T PF00331_consen 266 LTACFSHPPAAVEGITWWGFTDGYSWRPDTPPDRPLLFDED-YQPKPAYDAIV 317 (320)
T ss_dssp HHHHHHTTHCTEEEEEESSSBTTGSTTGGHSEG--SSB-TT-SBB-HHHHHHH
T ss_pred HHHHHhCCccCCCEEEEECCCCCCcccCCCCCCCCeeECCC-cCCCHHHHHHH
Confidence 77776666 44443333322 1 12 355555 78999988753
No 35
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=40.90 E-value=66 Score=33.39 Aligned_cols=76 Identities=13% Similarity=0.088 Sum_probs=28.4
Q ss_pred HHhCCCCceEEeccccccCC-CC--CCcchHHHHHHHHHHHHHHHhhccceee-eeecccC---CccccccCCCCccCCc
Q 041499 295 KEFGPWSGAWVGEAGGAFNS-GG--KYVSHTFADGFWFLDQLGMTSTFNHKVF-CRQALIG---GNYALLNTTTFIPNPD 367 (512)
Q Consensus 295 ~~~~~~~~~wl~Etns~~~~-G~--~~vsdtf~aalw~lD~l~~~a~~g~~v~-~~q~l~g---g~Y~l~~~~~~~p~P~ 367 (512)
+....++|+|+.|+.+...+ +. ....+-.+ .+|..-.+...|+. +.-+ .|+...| ..+|+++.+...+++.
T Consensus 283 R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~~-~~~~~~~~A~Ga~~-i~~~~wr~~~~g~E~~~~g~~~~dg~~~~~~ 360 (374)
T PF02449_consen 283 RSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGEL-RLWSWQAIAHGADG-ILFWQWRQSRFGAEQFHGGLVDHDGREPTRR 360 (374)
T ss_dssp HHHTTT--EEEEEE--S--SSSSS-----TTHH-HHHHHHHHHTT-S--EEEC-SB--SSSTTTTS--SB-TTS--B-HH
T ss_pred HhhcCCCceEeecCCCCCCCCccCCCCCCCCHH-HHHHHHHHHHhCCe-eEeeeccCCCCCchhhhcccCCccCCCCCcH
Confidence 33357899999998663211 11 11111112 34544444333321 1111 3555665 4578999885477776
Q ss_pred chHHH
Q 041499 368 YYGSL 372 (512)
Q Consensus 368 Yy~~l 372 (512)
|.-..
T Consensus 361 ~~e~~ 365 (374)
T PF02449_consen 361 YREVA 365 (374)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 36
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=40.68 E-value=68 Score=34.65 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=62.8
Q ss_pred HHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeec-cCC
Q 041499 69 SNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNA-LIG 147 (512)
Q Consensus 69 ~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN~-~~~ 147 (512)
+.|+|.||....|++=+++=- .|... ....|+ -| -+..+++.+-+.+.|.+|+++|.= ...
T Consensus 73 i~Lm~~lG~~~yRfSIsWsRI-------~P~G~-~~~~N~---~g-------l~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 73 IALFAEMGFKCFRTSIAWTRI-------FPQGD-ELEPNE---EG-------LQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred HHHHHHcCCCEEEeccchhhc-------CcCCC-CCCCCH---HH-------HHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 688899999888876543321 11000 000011 11 134588899999999999999872 211
Q ss_pred CccCCCCCCCcCCCCC-hHHHHHHHHHHH----HcCceeeEeeeccccCC
Q 041499 148 RKKSKTDDTLWEGDWN-AQNARDLMKYTI----SKGYKIESYELGNELCA 192 (512)
Q Consensus 148 ~~~~~~~~~~~~~~w~-~~~A~~~~~y~~----~~g~~v~~wElGNEp~~ 192 (512)
-.. .+--+.|. .+.+..+++||+ ..|.+|++|--=|||+.
T Consensus 135 ~~L-----~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 135 YHL-----VTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred HHH-----HHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 000 00015674 455677889974 57899999999999984
No 37
>PLN02849 beta-glucosidase
Probab=39.30 E-value=71 Score=34.79 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=62.5
Q ss_pred HHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeec-cCC
Q 041499 69 SNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNA-LIG 147 (512)
Q Consensus 69 ~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN~-~~~ 147 (512)
+.|+|.||....|++=+++=-. |....+ .|+ -| -...+++.+-+.+.|.+|+++|.= ...
T Consensus 85 I~Lm~~lG~~aYRfSIsWsRI~-------P~G~g~--vN~---~g-------l~fY~~lid~l~~~GI~P~VTL~H~dlP 145 (503)
T PLN02849 85 VKLMVETGLDAFRFSISWSRLI-------PNGRGS--VNP---KG-------LQFYKNFIQELVKHGIEPHVTLFHYDHP 145 (503)
T ss_pred HHHHHHcCCCeEEEeccHHhcC-------cCCCCC--CCH---HH-------HHHHHHHHHHHHHcCCeEEEeecCCCCc
Confidence 6888899988888765433211 100000 011 11 134588999999999999999872 111
Q ss_pred CccCCCCCCCcCCCCC-hHHHHHHHHHHH----HcCceeeEeeeccccCC
Q 041499 148 RKKSKTDDTLWEGDWN-AQNARDLMKYTI----SKGYKIESYELGNELCA 192 (512)
Q Consensus 148 ~~~~~~~~~~~~~~w~-~~~A~~~~~y~~----~~g~~v~~wElGNEp~~ 192 (512)
-.. .+--|.|. .+.+..+++|++ ..|.+|++|--=|||+.
T Consensus 146 ~~L-----~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 146 QYL-----EDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred HHH-----HHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 000 00015564 455778889974 57899999999999994
No 38
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=34.10 E-value=98 Score=35.76 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeeccC
Q 041499 67 ILSNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNALI 146 (512)
Q Consensus 67 ~l~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN~~~ 146 (512)
+.+.++|..+...||..+ | +. + ++|+++|...|.=++=-.|+..
T Consensus 325 ~dl~lmk~~n~N~vRtsH-------y-P~-------------~---------------~~~ydLcDelGllV~~Ea~~~~ 368 (808)
T COG3250 325 RDLKLMKEANMNSVRTSH-------Y-PN-------------S---------------EEFYDLCDELGLLVIDEAMIET 368 (808)
T ss_pred HHHHHHHHcCCCEEEecC-------C-CC-------------C---------------HHHHHHHHHhCcEEEEecchhh
Confidence 346778888888999873 2 10 0 7899999999999997777643
Q ss_pred CCccCCCCCCCcCCCCChHHHHHHHHHHHH---cCceeeEeeeccccC
Q 041499 147 GRKKSKTDDTLWEGDWNAQNARDLMKYTIS---KGYKIESYELGNELC 191 (512)
Q Consensus 147 ~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~---~g~~v~~wElGNEp~ 191 (512)
-.- .....| .+++.+-+++... ..-.|.-|.+|||+.
T Consensus 369 ~~~-------~~~~~~-~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 369 HGM-------PDDPEW-RKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred cCC-------CCCcch-hHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 210 001223 3444444444321 222466999999975
No 39
>PLN02998 beta-glucosidase
Probab=33.51 E-value=95 Score=33.74 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=62.2
Q ss_pred HHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEee-ccCC
Q 041499 69 SNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLN-ALIG 147 (512)
Q Consensus 69 ~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN-~~~~ 147 (512)
+.++|.||...-|++=+++=-. |. +. .. .|+ -| -+..+++.+-+.+.|.+|+++|. +...
T Consensus 88 i~lmk~lG~~~YRfSIsWsRI~---P~-G~--g~---vN~---~g-------l~~Y~~lid~L~~~GIeP~VTL~H~dlP 148 (497)
T PLN02998 88 VKLMADMGLEAYRFSISWSRLL---PS-GR--GP---INP---KG-------LQYYNNLIDELITHGIQPHVTLHHFDLP 148 (497)
T ss_pred HHHHHHcCCCeEEeeccHHhcC---cC-CC--CC---cCH---HH-------HHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 6788889988888765433211 10 00 00 011 11 13458889999999999999987 2211
Q ss_pred CccCCCCCCCcCCCCC-hHHHHHHHHHHH----HcCceeeEeeeccccCC
Q 041499 148 RKKSKTDDTLWEGDWN-AQNARDLMKYTI----SKGYKIESYELGNELCA 192 (512)
Q Consensus 148 ~~~~~~~~~~~~~~w~-~~~A~~~~~y~~----~~g~~v~~wElGNEp~~ 192 (512)
-.. .+--+.|. .+.+..+++|++ ..|.+|++|--=|||+.
T Consensus 149 ~~L-----~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 149 QAL-----EDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred HHH-----HHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 000 00015564 455677888874 57999999999999995
No 40
>smart00632 Aamy_C Aamy_C domain.
Probab=32.89 E-value=2.4e+02 Score=22.07 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=16.5
Q ss_pred EEEEEecCCCCEEEEEEeCCCCceeEEEEe
Q 041499 395 VYSHCSKEKPGITVLLINLSNSTSFDVSVI 424 (512)
Q Consensus 395 ~YA~~~~~~g~v~l~liN~~~~~~~~v~l~ 424 (512)
+||.+ + |...+++||++... .++++.
T Consensus 10 ~laF~-R--g~~g~VaiN~~~~~-~~~~~~ 35 (81)
T smart00632 10 QIAFE-R--GSKGFVAINRSDSD-LTITLQ 35 (81)
T ss_pred EEEEE-C--CCeEEEEEECCCCc-eEEEEe
Confidence 45544 2 56778899998764 345553
No 41
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=32.63 E-value=1.1e+02 Score=30.48 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=62.3
Q ss_pred ccchhhHHHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcCCCCChHHHHHHHHHHHHcCceeeEeeeccccCCCCCCC
Q 041499 118 CLSMNRWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISKGYKIESYELGNELCASGVSA 197 (512)
Q Consensus 118 ~~t~~~~d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~~g~~v~~wElGNEp~~~~~~~ 197 (512)
.++.+....|.+||.+.|++-++- |.+=.....+ ...+....+......++++|++++|..|..|---+.-
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlv-D~GW~~~~~~-~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~------- 98 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLV-DAGWYGWEKD-DDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETG------- 98 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEE-BTTCCGS--T-TT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHT-------
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEe-cccccccccc-ccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcc-------
Confidence 456677899999999999998874 4432100000 0001112223456788999999999998777443332
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEEccCCCCchhHHHHHHhhhCCCCcceEEEE
Q 041499 198 KVSAEQYAKDIVALKNLVREMYPDATTQPKVLGPAGFFDKQWFNTFLEKSGQDVVDGLTHH 258 (512)
Q Consensus 198 ~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~~~~~id~vs~H 258 (512)
.+...|-++.+++-+.+++. +-...+..+++-+.-.-..|.+++++.+.... =.|.+|
T Consensus 99 -~~~~~~~~~~~~~f~~~~~~-Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~-LmvnfH 156 (273)
T PF10566_consen 99 -GNVANLEKQLDEAFKLYAKW-GVKGVKIDFMDRDDQEMVNWYEDILEDAAEYK-LMVNFH 156 (273)
T ss_dssp -TBHHHHHCCHHHHHHHHHHC-TEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT--EEEET
T ss_pred -hhhHhHHHHHHHHHHHHHHc-CCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcC-cEEEec
Confidence 22333444333333444432 10001222332222112357777777654321 245667
No 42
>PRK14706 glycogen branching enzyme; Provisional
Probab=32.41 E-value=2.4e+02 Score=31.75 Aligned_cols=26 Identities=4% Similarity=0.019 Sum_probs=21.5
Q ss_pred chhhHHHHHHHHhhcCCEEEEEeecc
Q 041499 120 SMNRWDEINDLFNQTGAMMTFGLNAL 145 (512)
Q Consensus 120 t~~~~d~~~~f~~~~G~~~i~glN~~ 145 (512)
|++.+..|.+-|.+.|.++|+-+=+.
T Consensus 215 ~~~~~~~lv~~~H~~gi~VilD~v~n 240 (639)
T PRK14706 215 TPEDFKYLVNHLHGLGIGVILDWVPG 240 (639)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 36788999999999999999876553
No 43
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=32.13 E-value=1.2e+02 Score=32.92 Aligned_cols=101 Identities=9% Similarity=-0.029 Sum_probs=62.6
Q ss_pred HHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEee-ccCC
Q 041499 69 SNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLN-ALIG 147 (512)
Q Consensus 69 ~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN-~~~~ 147 (512)
+.|+|.||...-|++=+++= +.|... +...|+ -| -...+++.+-+.+.|.+|+++|. ....
T Consensus 79 i~Lm~~lG~~aYRfSIsWsR-------I~P~G~-~~~~N~---~g-------l~~Y~~lId~L~~~GI~P~VTL~H~dlP 140 (478)
T PRK09593 79 IALFAEMGFKTYRMSIAWTR-------IFPKGD-ELEPNE---AG-------LQFYEDIFKECHKYGIEPLVTITHFDCP 140 (478)
T ss_pred HHHHHHcCCCEEEEecchhh-------cccCCC-CCCCCH---HH-------HHHHHHHHHHHHHcCCEEEEEecccCCC
Confidence 68889999888887654321 111000 000011 11 13458899999999999999987 2111
Q ss_pred CccCCCCCCCcCCCCCh-HHHHHHHHHHH----HcCceeeEeeeccccCC
Q 041499 148 RKKSKTDDTLWEGDWNA-QNARDLMKYTI----SKGYKIESYELGNELCA 192 (512)
Q Consensus 148 ~~~~~~~~~~~~~~w~~-~~A~~~~~y~~----~~g~~v~~wElGNEp~~ 192 (512)
... .+--+.|.. +.+..+++||+ ..|.+|++|--=|||+.
T Consensus 141 ~~L-----~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 185 (478)
T PRK09593 141 MHL-----IEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINM 185 (478)
T ss_pred HHH-----HhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhh
Confidence 000 000156654 44677888874 57999999999999995
No 44
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=31.90 E-value=1.8e+02 Score=26.47 Aligned_cols=68 Identities=12% Similarity=0.006 Sum_probs=42.7
Q ss_pred ccchhhHHHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcCCCC---ChHHHHHHHHHHHHcCceeeEeeec
Q 041499 118 CLSMNRWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDW---NAQNARDLMKYTISKGYKIESYELG 187 (512)
Q Consensus 118 ~~t~~~~d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~~~w---~~~~A~~~~~y~~~~g~~v~~wElG 187 (512)
.+++++|++.++-.+++|.+-++-...+.++.....+.. ....| ...--+.+++.|.+.|.+| +..|+
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~-~~~~~~~~~~d~l~~~L~~A~~~Gmkv-~~Gl~ 86 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKL-SPGGFYMPPVDLLEMILDAADKYGMKV-FVGLY 86 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccc-cCccccCCcccHHHHHHHHHHHcCCEE-EEeCC
Confidence 688999999999999999988876666655421100000 00000 0122445667778899998 77776
No 45
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=30.29 E-value=96 Score=33.21 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=59.2
Q ss_pred HHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccc---hhhHHHHHHHHhhcCCEEEEEeecc
Q 041499 69 SNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLS---MNRWDEINDLFNQTGAMMTFGLNAL 145 (512)
Q Consensus 69 ~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t---~~~~d~~~~f~~~~G~~~i~glN~~ 145 (512)
+.++|.||....|++=+++= +.|.. ..+.+. -...+++.+-+++.|.+|+++|.=-
T Consensus 64 i~l~~~lg~~~yRfsi~W~R-------i~P~g--------------~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~ 122 (455)
T PF00232_consen 64 IALMKELGVNAYRFSISWSR-------IFPDG--------------FEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHF 122 (455)
T ss_dssp HHHHHHHT-SEEEEE--HHH-------HSTTS--------------SSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHhhccceeeeecchhh-------eeecc--------------cccccCHhHhhhhHHHHHHHHhhccceeeeeeec
Confidence 68889999988887644221 11110 001122 1345888888999999999999832
Q ss_pred -CCCccCCCCCCCcCCCCC-hHHHHHHHHHHH----HcCceeeEeeeccccCC
Q 041499 146 -IGRKKSKTDDTLWEGDWN-AQNARDLMKYTI----SKGYKIESYELGNELCA 192 (512)
Q Consensus 146 -~~~~~~~~~~~~~~~~w~-~~~A~~~~~y~~----~~g~~v~~wElGNEp~~ 192 (512)
...-. .+ .|.|. +..+..+++|++ ..|..|++|---|||+.
T Consensus 123 ~~P~~l-----~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~ 169 (455)
T PF00232_consen 123 DLPLWL-----ED-YGGWLNRETVDWFARYAEFVFERFGDRVKYWITFNEPNV 169 (455)
T ss_dssp --BHHH-----HH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEEEETHHH
T ss_pred ccccce-----ee-cccccCHHHHHHHHHHHHHHHHHhCCCcceEEeccccce
Confidence 11000 00 25564 455677888874 57889999999999985
No 46
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=29.86 E-value=1.1e+02 Score=33.01 Aligned_cols=102 Identities=9% Similarity=-0.007 Sum_probs=64.7
Q ss_pred HHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeeccCCC
Q 041499 69 SNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNALIGR 148 (512)
Q Consensus 69 ~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN~~~~~ 148 (512)
+.+++.||....|++=+++= ..|.... ..+ ++ -| -+..+++.+.+++.|.+|+++|+--.-.
T Consensus 77 i~l~~~lG~~~yR~si~WsR---i~P~g~~--~~~---n~---~~-------~~~Y~~~i~~l~~~gi~p~VtL~H~~~P 138 (474)
T PRK09852 77 IALMAEMGFKVFRTSIAWSR---LFPQGDE--LTP---NQ---QG-------IAFYRSVFEECKKYGIEPLVTLCHFDVP 138 (474)
T ss_pred HHHHHHcCCCeEEeeceeee---eeeCCCC--CCC---CH---HH-------HHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 57889999999998765432 2121000 000 11 11 2456899999999999999999943211
Q ss_pred ccCCCCCCCcCCCCCh-HHHHHHHHHHH----HcCceeeEeeeccccCC
Q 041499 149 KKSKTDDTLWEGDWNA-QNARDLMKYTI----SKGYKIESYELGNELCA 192 (512)
Q Consensus 149 ~~~~~~~~~~~~~w~~-~~A~~~~~y~~----~~g~~v~~wElGNEp~~ 192 (512)
.. -.+--+.|.. ..+..+++|++ ..|..|++|--=|||+.
T Consensus 139 -~~---l~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~ 183 (474)
T PRK09852 139 -MH---LVTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINI 183 (474)
T ss_pred -HH---HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhh
Confidence 00 0000156765 44566788863 57889999999999994
No 47
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=29.81 E-value=51 Score=28.58 Aligned_cols=31 Identities=16% Similarity=0.330 Sum_probs=26.6
Q ss_pred CcCcHHHHHHHHHcCCCEEeecccccceeeEe
Q 041499 62 DLKNKILSNAIKAFQPLRIRVGGSLQDQVLYK 93 (512)
Q Consensus 62 ~l~~~~l~~l~k~l~p~~lR~GG~~~D~~~~~ 93 (512)
..++-+|....++||| |||=+=|..|+++||
T Consensus 6 ~~~~~RLlk~f~alGP-YlRE~qc~e~~ffFD 36 (127)
T PRK10984 6 GHPKSRLIKKFTALGP-YLREGQCEENRFFFD 36 (127)
T ss_pred CCCchHHHHHHHHhCc-hhchhcccCCCEEee
Confidence 3556778888999995 999999999999997
No 48
>PF07417 Crl: Transcriptional regulator Crl; InterPro: IPR009986 This family contains the bacterial transcriptional regulator Crl (approximately 130 residues long). This is a transcriptional regulator of the csgA curlin subunit gene for curli fibres that are found on the surface of certain bacteria [].These proteins bind to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. They also stimulate RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32.; GO: 0016987 sigma factor activity, 0045893 positive regulation of transcription, DNA-dependent, 0005737 cytoplasm; PDB: 3RPJ_A.
Probab=27.21 E-value=43 Score=28.93 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=22.6
Q ss_pred cCcHHHHHHHHHcCCCEEeecccccceeeEe
Q 041499 63 LKNKILSNAIKAFQPLRIRVGGSLQDQVLYK 93 (512)
Q Consensus 63 l~~~~l~~l~k~l~p~~lR~GG~~~D~~~~~ 93 (512)
.++-+|....++||| |||=+=|..|+++||
T Consensus 5 ~~~~RLlk~f~alGP-YlRE~qc~e~~ffFD 34 (125)
T PF07417_consen 5 PTHSRLLKKFAALGP-YLREGQCQEDRFFFD 34 (125)
T ss_dssp S-HHHHHHHHHTT-T-TB-GGG-BTTEEEEE
T ss_pred CchHHHHHHHHhhCc-hhcccccccCcEeee
Confidence 456678888899995 999999999999998
No 49
>PLN02814 beta-glucosidase
Probab=26.06 E-value=1.1e+02 Score=33.19 Aligned_cols=100 Identities=12% Similarity=0.087 Sum_probs=62.4
Q ss_pred HHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEee-ccCC
Q 041499 69 SNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLN-ALIG 147 (512)
Q Consensus 69 ~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN-~~~~ 147 (512)
+.++|.||....|++=+++=-.- .+.+ . .|+ -| -...+++.+-+.+.|.+|+++|. ....
T Consensus 83 I~L~k~lG~~ayRfSIsWsRI~P--~G~g----~---~N~---~G-------l~fY~~lId~l~~~GI~P~VTL~H~dlP 143 (504)
T PLN02814 83 VKLMAEMGLESFRFSISWSRLIP--NGRG----L---INP---KG-------LLFYKNLIKELRSHGIEPHVTLYHYDLP 143 (504)
T ss_pred HHHHHHcCCCEEEEeccHhhcCc--CCCC----C---CCH---HH-------HHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 67889999888887654432111 0000 0 011 11 14458899999999999999987 2111
Q ss_pred CccCCCCCCCcCCCCCh-HHHHHHHHHHH----HcCceeeEeeeccccCC
Q 041499 148 RKKSKTDDTLWEGDWNA-QNARDLMKYTI----SKGYKIESYELGNELCA 192 (512)
Q Consensus 148 ~~~~~~~~~~~~~~w~~-~~A~~~~~y~~----~~g~~v~~wElGNEp~~ 192 (512)
-.. .+--+.|.. +.+..+++||+ ..|.+|++|--=|||+.
T Consensus 144 ~~L-----~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~ 188 (504)
T PLN02814 144 QSL-----EDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATI 188 (504)
T ss_pred HHH-----HHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccch
Confidence 000 000155654 45667888874 57899999999999995
No 50
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=25.75 E-value=3.8e+02 Score=22.06 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcCCCCChHHHHHHHHHHHHcCceeeEeeeccccCCCCCCCCCC
Q 041499 121 MNRWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISKGYKIESYELGNELCASGVSAKVS 200 (512)
Q Consensus 121 ~~~~d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~~g~~v~~wElGNEp~~~~~~~~~s 200 (512)
.+.+..++++.++.|++..|.+.-.. ..+-.+.++...+. .|||||--+.+..-...+
T Consensus 17 ~~~~~~~~~~l~~~~i~at~fv~~~~-----------------~~~~~~~l~~l~~~-----G~ei~~H~~~H~~~~~~~ 74 (123)
T PF01522_consen 17 RDNYDRLLPLLKKYGIPATFFVIGSW-----------------VERYPDQLRELAAA-----GHEIGNHGWSHPNLSTLS 74 (123)
T ss_dssp HTHHHHHHHHHHHTT--EEEEE-HHH-----------------HHHHHHHHHHHHHT-----T-EEEEE-SSSSCGGGS-
T ss_pred hhhHHHHHHHHHhcccceeeeecccc-----------------cccccccchhHHHH-----HHHHHhcCCcccccccCC
Confidence 35569999999999999998766432 12223444444433 477888877543334567
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCeEEccCCC
Q 041499 201 AEQYAKDIVALKNLVREMYPDATTQPKVLGPAGF 234 (512)
Q Consensus 201 ~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~ 234 (512)
.++..++..+-++.|++..+.. -.-+..|.+.
T Consensus 75 ~~~~~~ei~~~~~~l~~~~g~~--~~~f~~P~g~ 106 (123)
T PF01522_consen 75 PEELRREIERSREILEEITGRP--PKGFRYPFGS 106 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSE--ESEEE-GGGE
T ss_pred HHHHHHHHHHHHHHHHHHhCCC--CcEEECCCCC
Confidence 8889999999999999874321 1234455543
No 51
>PRK12568 glycogen branching enzyme; Provisional
Probab=25.60 E-value=4.1e+02 Score=30.39 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHhhcCCEEEEEeecc
Q 041499 121 MNRWDEINDLFNQTGAMMTFGLNAL 145 (512)
Q Consensus 121 ~~~~d~~~~f~~~~G~~~i~glN~~ 145 (512)
++.+..|.+-|.+.|.++|+-+-+.
T Consensus 318 ~~dfk~lV~~~H~~Gi~VIlD~V~n 342 (730)
T PRK12568 318 PDGFAQFVDACHRAGIGVILDWVSA 342 (730)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccc
Confidence 6788999999999999999877653
No 52
>PF13539 Peptidase_M15_4: D-alanyl-D-alanine carboxypeptidase
Probab=24.56 E-value=1e+02 Score=23.36 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=32.6
Q ss_pred ccCCceeEEEeecCCCCcCCCCCCCCCCccccCCCcCcHHHHHHHHHcCCCEEeecccc--cceeeEe
Q 041499 28 NTDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLDLKNKILSNAIKAFQPLRIRVGGSL--QDQVLYK 93 (512)
Q Consensus 28 ~i~~~f~g~sie~w~~~~~~y~~~~wg~~~~~~~~l~~~~l~~l~k~l~p~~lR~GG~~--~D~~~~~ 93 (512)
..|.+.+|..||+=+... ..+.|.+..-.........++++++++| +|.||.+ .|.+||+
T Consensus 5 ~~S~H~~G~AiDin~~~n---p~~~~~~~~~~~~~~~~~~~~~~~~~~G---~~WGG~W~~~D~~HFe 66 (67)
T PF13539_consen 5 KLSNHSYGLAIDINPDEN---PYIQWNGDVDGYKIADYKEVVAIFEKLG---FRWGGDWKFKDYMHFE 66 (67)
T ss_pred cccccccEEEEEEccccC---CeeeeCCccchhhhhhHHHHHHHHHhCC---CEeCCCCCCCCCcCCc
Confidence 478899999999643211 0111211100011122334667777666 5999986 5777764
No 53
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=24.15 E-value=1.4e+02 Score=32.13 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=62.6
Q ss_pred HHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEee-ccCC
Q 041499 69 SNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLN-ALIG 147 (512)
Q Consensus 69 ~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN-~~~~ 147 (512)
+.|+|.||....|++=+++=-.- .+.+ . .|+ -| -+..+++.+-+.+.|.+|+++|. +...
T Consensus 60 i~L~~~lG~~~yRfSIsWsRI~P--~G~g----~---vN~---~g-------l~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (469)
T PRK13511 60 LKLAEEFGVNGIRISIAWSRIFP--DGYG----E---VNP---KG-------VEYYHRLFAECHKRHVEPFVTLHHFDTP 120 (469)
T ss_pred HHHHHHhCCCEEEeeccHhhcCc--CCCC----C---cCH---HH-------HHHHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 68889999988888654332111 0000 0 011 11 14568999999999999999988 2211
Q ss_pred CccCCCCCCCcCCCCCh-HHHHHHHHHHH----HcCceeeEeeeccccCC
Q 041499 148 RKKSKTDDTLWEGDWNA-QNARDLMKYTI----SKGYKIESYELGNELCA 192 (512)
Q Consensus 148 ~~~~~~~~~~~~~~w~~-~~A~~~~~y~~----~~g~~v~~wElGNEp~~ 192 (512)
... .+ .+.|.. +.+..+++||+ ..|. |++|--=|||+.
T Consensus 121 ~~L-----~~-~GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~ 163 (469)
T PRK13511 121 EAL-----HS-NGDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGP 163 (469)
T ss_pred HHH-----HH-cCCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhh
Confidence 100 01 266654 45677888873 5788 999999999985
No 54
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=23.34 E-value=3.3e+02 Score=29.40 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=76.4
Q ss_pred cCCceeEEEeecCCCCcCCCCCCCCCCccccCCCcCcHHHHHHHHHcCCCEEee----cccccceeeEecCCCCCccCCc
Q 041499 29 TDDNFVCATIDWWPINKCDYNQCPWGKSGVLNLDLKNKILSNAIKAFQPLRIRV----GGSLQDQVLYKVGNSAKKCPHF 104 (512)
Q Consensus 29 i~~~f~g~sie~w~~~~~~y~~~~wg~~~~~~~~l~~~~l~~l~k~l~p~~lR~----GG~~~D~~~~~~~~~~~~~~p~ 104 (512)
+...=.-+|+||+||-- ...+ .||... +..|.+.+-|.++-+ ||.+++....-.+...+.|.-
T Consensus 12 ~~~g~~~~S~EfFpPkT---------~~Gv--~NL~~R-~dRm~~~g~P~FvdvTWgagG~ta~~s~~ias~~q~~~~v- 78 (590)
T KOG0564|consen 12 LVSGKTAFSFEFFPPKT---------EAGV--PNLYER-MDRMSEGGPPTFVDVTWGAGGSTAELSLGIASSAQNVCGL- 78 (590)
T ss_pred ccccCceeEEEecCccc---------cccc--ccHHHH-HHHHHhcCCCeEEEEEecCCCCcccccHHHHHHHHHhcCc-
Confidence 33344557889998631 0112 235443 556665544766664 666664333322211111100
Q ss_pred ccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcCCCCChH-----HHHHHHHHHHH-cC
Q 041499 105 KLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQ-----NARDLMKYTIS-KG 178 (512)
Q Consensus 105 ~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~~~w~~~-----~A~~~~~y~~~-~g 178 (512)
+.-+ =.+-.....+..|.-++-|+..|++=|+.| .|++.. +. +.|... -|.++++|.++ .|
T Consensus 79 ---~t~m-HlTCtn~~~~~Id~aLe~a~~~GirNILAL---RGDpP~---g~---d~~~~~e~gF~yA~DLVr~Irs~YG 145 (590)
T KOG0564|consen 79 ---ETCM-HLTCTNMPKEMIDKALEQAKALGIRNILAL---RGDPPI---GQ---DKWVEEEGGFRYAVDLVRYIRSKYG 145 (590)
T ss_pred ---ccee-eeeccCccHHHHHHHHHHHHHhCchhhhhh---cCCCCC---Cc---cccccccCCchhHHHHHHHHHHHhC
Confidence 0000 000012334567888888999999988744 333211 11 234444 49999999975 45
Q ss_pred ceeeEeeeccccCCCCCCCCCCHHHHHHHHHHHHHHH
Q 041499 179 YKIESYELGNELCASGVSAKVSAEQYAKDIVALKNLV 215 (512)
Q Consensus 179 ~~v~~wElGNEp~~~~~~~~~s~~~Ya~d~~~~~~~~ 215 (512)
..+ ...+.=-|.++ +. .-..+|.+|..-+.+-+
T Consensus 146 DyF-~IgVAgYPEgh--pe-~~~~~~~~Dl~yLk~Kv 178 (590)
T KOG0564|consen 146 DYF-CIGVAGYPEGH--PE-APSHDYLADLPYLKEKV 178 (590)
T ss_pred CeE-EEEeccCCCCC--cC-CcccchhhhhHHHHHhh
Confidence 533 44454445543 21 11123555555554444
No 55
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=23.09 E-value=2.8e+02 Score=30.39 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHhhcCCEEEEEeeccC
Q 041499 121 MNRWDEINDLFNQTGAMMTFGLNALI 146 (512)
Q Consensus 121 ~~~~d~~~~f~~~~G~~~i~glN~~~ 146 (512)
.+.+.+|.+-|++.|.++|+-+-+.+
T Consensus 75 ~~df~~Lv~~ah~~Gi~vilD~V~NH 100 (539)
T TIGR02456 75 IDDFKDFVDEAHARGMRVIIDLVLNH 100 (539)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 46788899999999999998776654
No 56
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=22.43 E-value=7.5e+02 Score=24.33 Aligned_cols=100 Identities=19% Similarity=0.255 Sum_probs=65.4
Q ss_pred HHHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcCCCCChHHHHHHHHHHHHcCceeeEeeeccccCCCCCCCCCCHHH
Q 041499 124 WDEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISKGYKIESYELGNELCASGVSAKVSAEQ 203 (512)
Q Consensus 124 ~d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~~g~~v~~wElGNEp~~~~~~~~~s~~~ 203 (512)
.+.+++..++.|++..|=++-.... ..+ ++++...+. .+||||=-+.+..-..+++++
T Consensus 30 t~riL~lL~~~gikATFFv~g~~~e-------------~~p----~lir~i~~~-----GhEIgsHg~sH~~l~~ls~ee 87 (265)
T TIGR03006 30 TDRILDLLDRHGVKATFFTLGWVAE-------------RYP----ELVRRIVAA-----GHELASHGYGHERVTTQTPEA 87 (265)
T ss_pred HHHHHHHHHHcCCcEEEEEeccchh-------------hCH----HHHHHHHHc-----CCEeeeccccCcCchhCCHHH
Confidence 4789999999999999977632110 123 334444433 468887766543334678999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCC-eEEccCCCC--chhHHHHHHhhhC
Q 041499 204 YAKDIVALKNLVREMYPDATTQP-KVLGPAGFF--DKQWFNTFLEKSG 248 (512)
Q Consensus 204 Ya~d~~~~~~~~~~~~~~~~~~~-~~~gp~~~~--~~~w~~~~l~~~~ 248 (512)
..++..+-.+.|+++.+. .+ -+..|+... ...|..+.|.+.|
T Consensus 88 ~~~eI~~s~~~Le~itG~---~~~gfRaP~~s~~~~t~~a~~iL~e~G 132 (265)
T TIGR03006 88 FRADIRRSKALLEDLSGQ---PVRGYRAPSFSIGKKNLWALDVLAEAG 132 (265)
T ss_pred HHHHHHHHHHHHHHHhCC---CceEEECCCCCCCCCcHHHHHHHHHCC
Confidence 999999999999987432 22 344565432 3367778887775
No 57
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=21.81 E-value=2.5e+02 Score=30.11 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=62.7
Q ss_pred HHHHHHHcCCCEEeecccccceeeEecCCCCCccCCcccCCCCcccccccccchhhHHHHHHHHhhcCCEEEEEee-ccC
Q 041499 68 LSNAIKAFQPLRIRVGGSLQDQVLYKVGNSAKKCPHFKLRKDGLFGFSKGCLSMNRWDEINDLFNQTGAMMTFGLN-ALI 146 (512)
Q Consensus 68 l~~l~k~l~p~~lR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~t~~~~d~~~~f~~~~G~~~i~glN-~~~ 146 (512)
=+.|++.+|--..|++=.++= ++-.+.+. +.+.-| -...+++.+=|.+.|.+++++|. +-.
T Consensus 64 Di~L~~emG~~~~R~SI~WsR--IfP~g~~~---------e~N~~g-------l~fY~~l~del~~~gIep~vTL~Hfd~ 125 (460)
T COG2723 64 DIALAKEMGLNAFRTSIEWSR--IFPNGDGG---------EVNEKG-------LRFYDRLFDELKARGIEPFVTLYHFDL 125 (460)
T ss_pred HHHHHHHcCCCEEEeeeeEEE--eecCCCCC---------CcCHHH-------HHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 378999999988887643221 11111110 111111 13458899999999999999987 221
Q ss_pred CCccCCCCCCCcCCCCChHH-HHHHHHHHH----HcCceeeEeeeccccCC
Q 041499 147 GRKKSKTDDTLWEGDWNAQN-ARDLMKYTI----SKGYKIESYELGNELCA 192 (512)
Q Consensus 147 ~~~~~~~~~~~~~~~w~~~~-A~~~~~y~~----~~g~~v~~wElGNEp~~ 192 (512)
.-.. ...-|.|...+ ...+++||+ ..+.+|++|-.=|||+.
T Consensus 126 P~~L-----~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~ 171 (460)
T COG2723 126 PLWL-----QKPYGGWENRETVDAFARYAATVFERFGDKVKYWFTFNEPNV 171 (460)
T ss_pred cHHH-----hhccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhh
Confidence 1100 01115676555 445677764 57889999999999985
No 58
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=21.69 E-value=6.2e+02 Score=23.06 Aligned_cols=97 Identities=22% Similarity=0.306 Sum_probs=59.0
Q ss_pred HHHHHHHhhcCCEEEEEeeccCCCccCCCCCCCcCCCCChHHHHHHHHHHHHcCceeeEeeeccccCCCCCCCCCCHHHH
Q 041499 125 DEINDLFNQTGAMMTFGLNALIGRKKSKTDDTLWEGDWNAQNARDLMKYTISKGYKIESYELGNELCASGVSAKVSAEQY 204 (512)
Q Consensus 125 d~~~~f~~~~G~~~i~glN~~~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~~g~~v~~wElGNEp~~~~~~~~~s~~~Y 204 (512)
..+.+..++.|.+..|=++ +.. ..+-.++++...+.| +||||=-+.+..-..+++++.
T Consensus 22 ~~~l~~L~~~~ikaTfFv~---g~~--------------~~~~~~~~~~i~~~G-----heig~Ht~~H~~~~~~~~~~~ 79 (191)
T TIGR02764 22 EPILDTLKEYDVKATFFLS---GSW--------------AERHPELVKEIVKDG-----HEIGSHGYRHKNYTTLEDEKI 79 (191)
T ss_pred HHHHHHHHHcCCCEEEEec---cHH--------------HHHCHHHHHHHHhCC-----CEEEECCcCCCCcccCCHHHH
Confidence 6788889999999888544 211 111123444444444 688998876432345788999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCC-eEEccCCCCchhHHHHHHhhh
Q 041499 205 AKDIVALKNLVREMYPDATTQP-KVLGPAGFFDKQWFNTFLEKS 247 (512)
Q Consensus 205 a~d~~~~~~~~~~~~~~~~~~~-~~~gp~~~~~~~w~~~~l~~~ 247 (512)
.++..+-.+.|++..+. .+ .+.-|.+..+ .-....+.+.
T Consensus 80 ~~ei~~~~~~l~~~~g~---~~~~fr~P~G~~~-~~~~~~l~~~ 119 (191)
T TIGR02764 80 KKDILRAQEIIEKLTGK---KPTLFRPPSGAFN-KAVLKAAESL 119 (191)
T ss_pred HHHHHHHHHHHHHHhCC---CCCEEECCCcCCC-HHHHHHHHHc
Confidence 99999999999887432 23 3455555433 2334445444
No 59
>PF02156 Glyco_hydro_26: Glycosyl hydrolase family 26; InterPro: IPR022790 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 26 GH26 from CAZY encompasses mainly mannan endo-1,4-beta-mannosidases (3.2.1.78 from EC). Mannan endo-1,4-beta-mannosidase hydrolyses mannan and galactomannan, but displays little activity towards other plant cell wall polysaccharides []. The enzyme randomly hydrolyses 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans and galactoglucomannans. This entry also incoporates the enzyme Endogluconase H 3.2.1.4 from EC catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. ; GO: 0008810 cellulase activity, 0016985 mannan endo-1,4-beta-mannosidase activity, 0006080 substituted mannan metabolic process; PDB: 2QHA_A 3CBW_A 2WHK_A 2VI0_A 2BVD_A 2BV9_A 2CIT_A 2V3G_A 2CIP_A 2X2Y_B ....
Probab=21.37 E-value=2.8e+02 Score=28.16 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=48.7
Q ss_pred HHHcCceeeEeeeccccCCCC--CCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCCeEE--ccCCCC--chhHHHHHHh
Q 041499 174 TISKGYKIESYELGNELCASG--VSA--KVSAEQYAKDIVALKNLVREMYPDATTQPKVL--GPAGFF--DKQWFNTFLE 245 (512)
Q Consensus 174 ~~~~g~~v~~wElGNEp~~~~--~~~--~~s~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~--gp~~~~--~~~w~~~~l~ 245 (512)
.+..+..| .|-.+.|.+|.. .|. ..+|++|.+.|+...+.+++..+- ...+. .|.... ..+|.
T Consensus 146 l~~~~vPV-l~Rp~HE~nG~WfwWg~~~~~~~~~y~~lwr~~~~~l~~~~g~---~Nliwvw~~~~~~~~~~~yY----- 216 (311)
T PF02156_consen 146 LKDAGVPV-LFRPFHEMNGGWFWWGAKGHCTPEQYKALWRHMVDYLRNVKGL---HNLIWVWSPNGSRDDAAEYY----- 216 (311)
T ss_dssp HHCTTS-E-EEEESTSTTSSSSTTSTTSTCHHHHHHHHHHHHHHHHHTTST----TSEEEEE-EBTTSSCTCTT------
T ss_pred hhcCCCeE-EEeehhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHHhccCC---ceEEEEecCCCCCCCccccC-----
Confidence 34467788 999999999842 332 256999999999999999875321 11222 343321 12331
Q ss_pred hhCCCCcceEEEEecCC
Q 041499 246 KSGQDVVDGLTHHIYNL 262 (512)
Q Consensus 246 ~~~~~~id~vs~H~Y~~ 262 (512)
-|.++||.|.+=.|..
T Consensus 217 -PGD~yVDivG~D~Y~~ 232 (311)
T PF02156_consen 217 -PGDDYVDIVGVDVYND 232 (311)
T ss_dssp ---TTT-SEEEEEEEES
T ss_pred -CCCCeEEEEEEeCCCC
Confidence 1234899999999975
Done!