BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041503
(99 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|98961915|gb|ABF59287.1| unknown protein [Arabidopsis thaliana]
Length = 165
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 17 ECGGQIELFTSHTTKNPNRKFWKCRVCKN---FQWAEDRKFSNEKIDLL 62
+CG + +FTS T KNP R F++C+ C++ F+W ED + E ID L
Sbjct: 38 KCGLDVVMFTSSTAKNPGRPFFRCKSCEDDHLFKWVEDCMY-EEVIDAL 85
>gi|116831656|gb|ABK28780.1| unknown [Arabidopsis thaliana]
Length = 166
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 17 ECGGQIELFTSHTTKNPNRKFWKCRVCKN---FQWAEDRKFSNEKIDLL 62
+CG + +FTS T KNP R F++C+ C++ F+W ED + E ID L
Sbjct: 38 KCGLDVVMFTSSTAKNPGRPFFRCKSCEDDHLFKWVEDCMY-EEVIDAL 85
>gi|297792533|ref|XP_002864151.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297309986|gb|EFH40410.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 155
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 17 ECGGQIELFTSHTTKNPNRKFWKCRVCKN---FQWAEDRKFSNEKIDLL 62
+CG + + TS T KNP R F++C+ CK+ F+W ED + E +D L
Sbjct: 38 KCGLDVVMLTSSTAKNPGRPFFRCKSCKDDHFFKWVEDCMYE-EVVDAL 85
>gi|297812357|ref|XP_002874062.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297319899|gb|EFH50321.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 165
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 17 ECGGQIELFTSHTTKNPNRKFWKCRVCKN---FQWAEDRKFSNEKIDLL 62
+CG + + TS T KNP R F++C+ CK+ F+W ED + E +D L
Sbjct: 38 KCGLDVVMLTSSTPKNPGRPFFRCKSCKDDHLFKWVEDCMYE-EVVDAL 85
>gi|297815734|ref|XP_002875750.1| hypothetical protein ARALYDRAFT_347673 [Arabidopsis lyrata subsp.
lyrata]
gi|297321588|gb|EFH52009.1| hypothetical protein ARALYDRAFT_347673 [Arabidopsis lyrata subsp.
lyrata]
Length = 142
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 17 ECGGQIELFTSHTTKNPNRKFWKCRV--------CKNFQWAEDRKFSNEKIDLLVEEVRK 68
ECG ++F S+T KNPNR+F+ C++ CK F+W + K EKI+ L + +
Sbjct: 22 ECGLPAKVFKSNTDKNPNRRFFGCQLYKEGGNAHCKFFRWLNEEK--TEKIEELNATILE 79
Query: 69 LTLEIER 75
L ++ER
Sbjct: 80 LRGDLER 86
>gi|297853464|ref|XP_002894613.1| zinc knuckle (CCHC-type) family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340455|gb|EFH70872.1| zinc knuckle (CCHC-type) family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 352
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 15 CNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAEDRKFSN 56
CN G + TS T KNPNR+F+ C CK F+W D+ F +
Sbjct: 42 CN--AGACNILTSKTEKNPNRRFYTCPSCKFFKWC-DQGFGD 80
>gi|297831848|ref|XP_002883806.1| hypothetical protein ARALYDRAFT_899599 [Arabidopsis lyrata subsp.
lyrata]
gi|297329646|gb|EFH60065.1| hypothetical protein ARALYDRAFT_899599 [Arabidopsis lyrata subsp.
lyrata]
Length = 165
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 17 ECGGQIELFTSHTTKNPNRKFWKCRV--------CKNFQWAEDRKFSNEKIDLLVEE--V 66
ECG Q ++F S T KNPNR+F+ C++ CK F+W ++ K L + +
Sbjct: 22 ECGLQAKVFKSKTDKNPNRRFFGCQLYKEGGNAHCKFFRWLDEEVIGWPKRALAEAQSVI 81
Query: 67 RKLTLEIERLSDKFRLLHKELEHTQL 92
++ T +IE L+ L +LE L
Sbjct: 82 KEKTKKIEELNATILELRGDLERQNL 107
>gi|255551821|ref|XP_002516956.1| conserved hypothetical protein [Ricinus communis]
gi|223544044|gb|EEF45570.1| conserved hypothetical protein [Ricinus communis]
Length = 129
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 19 GGQIELFTSHTTKNPNRKFWKCRVCKNF----QWAEDRKFSNEKIDLLVEEVRKLTLEIE 74
G + ELF S + NPNR FW+C + +W ++ K +E+ L+ EVR + L +
Sbjct: 34 GARAELFVSMSENNPNRNFWRCSFRPSLYIYIKWHDEWK--SERSLALLNEVRTMNLHLH 91
Query: 75 RLSDKFRLLHKEL 87
R L K++
Sbjct: 92 RAMKDIEALRKQI 104
>gi|11994249|dbj|BAB01424.1| unnamed protein product [Arabidopsis thaliana]
Length = 156
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKN---FQWAEDRKF-----SNEKIDLLVEEVRKL 69
CG + ++TS KNP R +++C K+ F+W ED + S K+ ++ E+
Sbjct: 28 CGLDVVIYTSTYAKNPGRPYFRCPTRKDDHLFKWVEDGTYEVVVDSWPKLSVMDSELSAA 87
Query: 70 TLEIERLSDKFRLLHKELEHTQLRSK 95
E+ + + + KEL+ +RS+
Sbjct: 88 KSEVAVELEALQAMVKELKEKVMRSE 113
>gi|297794471|ref|XP_002865120.1| hypothetical protein ARALYDRAFT_916653 [Arabidopsis lyrata subsp.
lyrata]
gi|297310955|gb|EFH41379.1| hypothetical protein ARALYDRAFT_916653 [Arabidopsis lyrata subsp.
lyrata]
Length = 165
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 17 ECGGQIELFTSHTTKNPNRKFWKCRV--------CKNFQWAEDRKFSNEKIDLLVEE--V 66
ECG ++F S T KNPNR+F+ C++ CK F+W ++ K L + +
Sbjct: 22 ECGLPAKVFKSKTDKNPNRRFFGCQLYKEGGNAHCKFFRWLDEEVIGWPKRALAEAQSVI 81
Query: 67 RKLTLEIERLSDKFRLLHKELEHTQL 92
++ T +IE L+ L +LE +L
Sbjct: 82 KEKTEKIEELNATILELRGDLERQKL 107
>gi|224105439|ref|XP_002313812.1| predicted protein [Populus trichocarpa]
gi|222850220|gb|EEE87767.1| predicted protein [Populus trichocarpa]
Length = 495
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 15 CNECGGQIELFTSHTTKNPNRKFWKCRV-------CKNFQWAED 51
C GG + TS+T KNP RKF+ C V C F+W++D
Sbjct: 83 CPCGGGTCRVSTSNTVKNPGRKFYACPVDQRTSGSCGFFKWSDD 126
>gi|65372050|ref|YP_233107.1| polyprotein [Banana streak GF virus]
gi|40457271|gb|AAR86692.1| polyprotein III [Banana streak GF virus]
Length = 1832
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKC--RVCKNFQWAE 50
CG L TSHT++NP R+F++C C + WA+
Sbjct: 1740 CGENAVLLTSHTSRNPGRRFYRCGTNTCHVWYWAD 1774
>gi|297847392|ref|XP_002891577.1| hypothetical protein ARALYDRAFT_891979 [Arabidopsis lyrata subsp.
lyrata]
gi|297337419|gb|EFH67836.1| hypothetical protein ARALYDRAFT_891979 [Arabidopsis lyrata subsp.
lyrata]
Length = 165
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 17 ECGGQIELFTSHTTKNPNRKFWKCRV--------CKNFQWAEDRKFSNEKIDLLVEE--V 66
ECG ++F S T KNPNR+F+ C++ CK F+W ++ K L + +
Sbjct: 22 ECGLPAKVFKSKTDKNPNRRFFGCQLYKEGGNAHCKFFRWLDEEVIGWPKRALAEAQSVI 81
Query: 67 RKLTLEIERLSDKFRLLHKELEHTQL 92
++ T +IE L+ L +LE L
Sbjct: 82 KEKTEKIEELNATILELRGDLERQNL 107
>gi|7267236|emb|CAB80843.1| hypothetical protein [Arabidopsis thaliana]
Length = 381
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKN-------FQWAEDR-----KFSNEKIDLLVEE 65
CG +I FTS T +NP R+F++C + F+W ++ K NEK +VE
Sbjct: 28 CGEEIITFTSKTKENPYRRFYRCAIAMKRENEEHLFKWVDEALLDEIKMVNEKCKRVVEN 87
Query: 66 VRKLTLEI 73
+ L + +
Sbjct: 88 ISDLRMNV 95
>gi|334186356|ref|NP_001190673.1| zinc ion binding protein [Arabidopsis thaliana]
gi|332657024|gb|AEE82424.1| zinc ion binding protein [Arabidopsis thaliana]
Length = 150
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKN-------FQWAEDR-----KFSNEKIDLLVEE 65
CG +I FTS T +NP R+F++C + F+W ++ K NEK +VE
Sbjct: 28 CGEEIITFTSKTKENPYRRFYRCAIAMKRENEEHLFKWVDEALLDEIKMVNEKCKRVVEN 87
Query: 66 VRKLTLEI 73
+ L + +
Sbjct: 88 ISDLRMNV 95
>gi|297813197|ref|XP_002874482.1| hypothetical protein ARALYDRAFT_911026 [Arabidopsis lyrata subsp.
lyrata]
gi|297320319|gb|EFH50741.1| hypothetical protein ARALYDRAFT_911026 [Arabidopsis lyrata subsp.
lyrata]
Length = 165
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 8/43 (18%)
Query: 17 ECGGQIELFTSHTTKNPNRKFWKCRV--------CKNFQWAED 51
ECG ++F S T KNPNR+F+ C++ CK F+W ++
Sbjct: 22 ECGLPAKVFKSKTDKNPNRRFFGCQLYKEGGNAHCKFFRWLDE 64
>gi|89257458|gb|ABD64950.1| GRF zinc finger containing protein [Brassica oleracea]
Length = 180
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKN---FQWAEDRKF-----SNEKIDLLVEEVRKL 69
CG + ++TS T NP R F++C +N ++W ++ + + K++ +V K+
Sbjct: 58 CGRRTGIYTSKTKVNPGRTFFRCPTFQNDHLYKWVDEAVYEEVQDALPKVECFASDVMKI 117
Query: 70 TLEIERL 76
+EIE +
Sbjct: 118 KMEIESM 124
>gi|297831974|ref|XP_002883869.1| hypothetical protein ARALYDRAFT_899717 [Arabidopsis lyrata subsp.
lyrata]
gi|297329709|gb|EFH60128.1| hypothetical protein ARALYDRAFT_899717 [Arabidopsis lyrata subsp.
lyrata]
Length = 165
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 8/43 (18%)
Query: 17 ECGGQIELFTSHTTKNPNRKFWKCRV--------CKNFQWAED 51
ECG ++F S T KNPNR+F+ C++ CK F+W ++
Sbjct: 22 ECGLPAKVFKSKTDKNPNRRFFGCQLYKEGGNAHCKFFRWLDE 64
>gi|297790736|ref|XP_002863253.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309087|gb|EFH39512.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 165
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 8/43 (18%)
Query: 17 ECGGQIELFTSHTTKNPNRKFWKCRV--------CKNFQWAED 51
ECG ++F S T KNPNR+F+ C++ CK F+W ++
Sbjct: 22 ECGLPAKVFKSKTDKNPNRRFFGCQLYKEGGNAHCKFFRWLDE 64
>gi|219816434|gb|ACL37068.1| ribonuclease H [Banana streak virus]
Length = 127
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKNFQWA 49
CG L TSHT++NP R+F++C + WA
Sbjct: 67 CGENAVLLTSHTSRNPGRRFYRCGQADDEGWA 98
>gi|297815294|ref|XP_002875530.1| hypothetical protein ARALYDRAFT_905282 [Arabidopsis lyrata subsp.
lyrata]
gi|297815318|ref|XP_002875542.1| hypothetical protein ARALYDRAFT_905301 [Arabidopsis lyrata subsp.
lyrata]
gi|297321368|gb|EFH51789.1| hypothetical protein ARALYDRAFT_905282 [Arabidopsis lyrata subsp.
lyrata]
gi|297321380|gb|EFH51801.1| hypothetical protein ARALYDRAFT_905301 [Arabidopsis lyrata subsp.
lyrata]
Length = 165
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 8/43 (18%)
Query: 17 ECGGQIELFTSHTTKNPNRKFWKCRV--------CKNFQWAED 51
ECG ++F S T KNPNR+F+ C++ CK F+W ++
Sbjct: 22 ECGLPAKVFKSKTDKNPNRRFFGCQLYKEGGNAHCKFFRWLDE 64
>gi|219816432|gb|ACL37067.1| ribonuclease H [Banana streak virus]
Length = 158
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKC--RVCKNFQWAE 50
CG L TSHT++NP R+F++C C + WA+
Sbjct: 69 CGENAVLLTSHTSRNPGRRFYRCGTNTCHVWYWAD 103
>gi|297828778|ref|XP_002882271.1| hypothetical protein ARALYDRAFT_896293 [Arabidopsis lyrata subsp.
lyrata]
gi|297328111|gb|EFH58530.1| hypothetical protein ARALYDRAFT_896293 [Arabidopsis lyrata subsp.
lyrata]
Length = 164
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 13/71 (18%)
Query: 5 TNESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKCRV--------CKNFQWAEDRKFSN 56
TN R +VC+ CG +++ S T KNPNR+F+ C++ CK F+W E+
Sbjct: 14 TNGGR---KVCD-CGLPAKIYKSKTEKNPNRRFFGCQLYKEGGNAHCKFFRWFEEETVKG 69
Query: 57 -EKIDLLVEEV 66
KI L+ E
Sbjct: 70 LPKIGLIEAEA 80
>gi|15221941|ref|NP_175890.1| GRF zinc finger / Zinc knuckle protein [Arabidopsis thaliana]
gi|9857519|gb|AAG00874.1|AC064840_5 Hypothetical protein [Arabidopsis thaliana]
gi|12322160|gb|AAG51116.1|AC069144_13 hypothetical protein [Arabidopsis thaliana]
gi|332195043|gb|AEE33164.1| GRF zinc finger / Zinc knuckle protein [Arabidopsis thaliana]
Length = 353
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 15 CNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAE 50
CN G TS T KNPNR+F+ C C F+W +
Sbjct: 42 CN--AGPCNTVTSKTEKNPNRRFYTCPSCGYFKWCD 75
>gi|44894454|gb|AAS48724.1| ribonuclease H [Banana streak virus]
Length = 138
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKC--RVCKNFQWAE 50
CG L TSHT++NP R+F++C C + WA+
Sbjct: 49 CGENAVLLTSHTSRNPGRRFYRCGTNTCHVWYWAD 83
>gi|449438355|ref|XP_004136954.1| PREDICTED: uncharacterized protein LOC101219463 [Cucumis sativus]
gi|449438357|ref|XP_004136955.1| PREDICTED: uncharacterized protein LOC101219463 [Cucumis sativus]
Length = 150
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKC-----RVCKNFQWAEDRKFSNEK 58
CG +L SHT K P R F+ C + C F WA++R+ SN++
Sbjct: 16 CGVAAKLRMSHTEKGPFRLFYNCPKEISQQCGFFHWADEREPSNDR 61
>gi|9695316|gb|AAF97425.1|AF215814_1 ORF III polyprotein, partial [Banana streak virus]
Length = 279
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKC--RVCKNFQWAE 50
CG L TSHT++NP R+F++C C + WA+
Sbjct: 187 CGENAVLLTSHTSRNPGRRFYRCGTNTCHVWYWAD 221
>gi|219816428|gb|ACL37065.1| ribonuclease H [Banana streak virus]
Length = 114
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKC--RVCKNFQWAE 50
CG L TSHT++NP R+F++C C + WA+
Sbjct: 69 CGENAVLLTSHTSRNPGRRFYRCGTNTCHVWYWAD 103
>gi|304273293|gb|ADM18310.1| GRF zinc finger-containing protein-like protein [Gladiolus
grandiflorus]
Length = 158
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKNFQW--AEDRKFSNEKIDLLVE------EVRKL 69
CG L S T N R+F+KC +C F W E R ++ LLV+ EVR L
Sbjct: 17 CGFPSTLRISWTGSNLGRRFYKCNLCNFFMWLDPESRWYNYAMNALLVKKSNLQREVRGL 76
Query: 70 TLEIERLSDK 79
LE++ + ++
Sbjct: 77 KLELQLMGER 86
>gi|62327617|ref|YP_224289.1| ORF III polyprotein [Banana streak Mysore virus]
gi|58618162|gb|AAW80648.1| ORF III polyprotein [Banana streak Mysore virus]
Length = 1869
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 1774 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 1816
>gi|219816430|gb|ACL37066.1| ribonuclease H [Banana streak virus]
Length = 98
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKC--RVCKNFQWAE 50
CG L TSHT++NP R+F++C C + WA+
Sbjct: 9 CGENAVLLTSHTSRNPGRRFYRCGTNTCHVWYWAD 43
>gi|75216472|sp|Q9ZS96.1|Y4478_ARATH RecName: Full=Uncharacterized protein At4g04775
gi|4115932|gb|AAD03442.1| T4B21.8 gene product [Arabidopsis thaliana]
Length = 160
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKN-------FQWAEDR-----KFSNEKIDLLVEE 65
CG +I FTS T +NP R+F++C + F+W ++ K NEK +VE
Sbjct: 28 CGEEIITFTSKTKENPYRRFYRCAIAMKRENEEHLFKWVDEALLDEIKMVNEKCKRVVEN 87
Query: 66 VRKLTLEI 73
+ L + +
Sbjct: 88 ISDLRMNV 95
>gi|297596463|ref|NP_001042623.2| Os01g0255700 [Oryza sativa Japonica Group]
gi|255673071|dbj|BAF04537.2| Os01g0255700 [Oryza sativa Japonica Group]
Length = 501
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAEDRKFSNEKIDLLVEEVRKLTLEIERLS 77
C I F SHT +NPNR+F KC K ++ E R ++ L +++ K + IE +
Sbjct: 407 CEDPIRTFASHTARNPNRRFLKC--AKKYELEEKRN----QVHRLQDDIEKCHVLIEDNA 460
Query: 78 DKFR 81
K +
Sbjct: 461 AKLK 464
>gi|391225740|gb|AFM38069.1| RNase H, partial [Banana streak Mysore virus]
Length = 180
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 97 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 139
>gi|391225728|gb|AFM38063.1| RNase H, partial [Banana streak Mysore virus]
Length = 177
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 91 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 133
>gi|391225730|gb|AFM38064.1| RNase H, partial [Banana streak Mysore virus]
Length = 176
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 90 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 132
>gi|391225732|gb|AFM38065.1| RNase H, partial [Banana streak Mysore virus]
Length = 176
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 90 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 132
>gi|391225734|gb|AFM38066.1| RNase H, partial [Banana streak Mysore virus]
Length = 178
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 95 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 137
>gi|391225750|gb|AFM38074.1| RNase H, partial [Banana streak Mysore virus]
Length = 170
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 87 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 129
>gi|391225736|gb|AFM38067.1| RNase H, partial [Banana streak Mysore virus]
Length = 176
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 93 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 135
>gi|391225746|gb|AFM38072.1| RNase H, partial [Banana streak Mysore virus]
Length = 177
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 96 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 138
>gi|391225742|gb|AFM38070.1| RNase H, partial [Banana streak Mysore virus]
Length = 176
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 108 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 150
>gi|391225738|gb|AFM38068.1| RNase H, partial [Banana streak Mysore virus]
Length = 173
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 90 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 132
>gi|391225726|gb|AFM38062.1| RNase H, partial [Banana streak Mysore virus]
gi|391225744|gb|AFM38071.1| RNase H, partial [Banana streak Mysore virus]
Length = 177
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 110 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 152
>gi|297811507|ref|XP_002873637.1| zinc knuckle (CCHC-type) family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319474|gb|EFH49896.1| zinc knuckle (CCHC-type) family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 397
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 1 MSSSTNESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKCRV---CKNFQWAEDRKFSNE 57
+ S T++ C GG E+ ++T +NP RKF+KC CK F+W + K ++E
Sbjct: 21 LKSKTDDDPPPAIHCTCGGGFCEIKVANTRENPGRKFYKCPTAQNCKFFKWCD--KVTDE 78
Query: 58 KI 59
I
Sbjct: 79 DI 80
>gi|391225752|gb|AFM38075.1| RNase H, partial [Banana streak Mysore virus]
Length = 171
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 108 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 150
>gi|391225748|gb|AFM38073.1| RNase H, partial [Banana streak Mysore virus]
Length = 170
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 111 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 153
>gi|332308937|ref|YP_004442827.1| polyprotein [Banana streak UI virus]
gi|331029454|gb|AEC49877.1| polyprotein [Banana streak UI virus]
Length = 1837
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 15 CNECGGQIELFTSHTTKNPNRKFWKC--RVCKNFQWAED-RKFSNEKIDLLVEEVRK 68
CN CG L S T+KNP R+FW C R C + W + + + +I + +E+++K
Sbjct: 1741 CN-CGQPAVLKISQTSKNPGRRFWTCEQRKCHAWWWDDHLEDYIHARIKMKLEDIQK 1796
>gi|219816438|gb|ACL37070.1| ribonuclease H [Banana streak virus]
Length = 188
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 110 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 152
>gi|357469237|ref|XP_003604903.1| hypothetical protein MTR_4g021240 [Medicago truncatula]
gi|355505958|gb|AES87100.1| hypothetical protein MTR_4g021240 [Medicago truncatula]
Length = 168
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 2 SSSTNESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKCRV------CKNFQWAED 51
SS +N N +C C ++++ S+T +NP RKFW+CR C+ F W ++
Sbjct: 7 SSISNHDGNRPPICG-CEKVMKMWISNTDENPKRKFWRCRFSGAEYSCELFIWDDE 61
>gi|297822095|ref|XP_002878930.1| hypothetical protein ARALYDRAFT_901331 [Arabidopsis lyrata subsp.
lyrata]
gi|297324769|gb|EFH55189.1| hypothetical protein ARALYDRAFT_901331 [Arabidopsis lyrata subsp.
lyrata]
Length = 85
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 8/43 (18%)
Query: 17 ECGGQIELFTSHTTKNPNRKFWKCRV--------CKNFQWAED 51
ECG ++F S T KNPNR+F+ C++ CK F+W ++
Sbjct: 22 ECGLPAKVFKSKTDKNPNRRFYGCQLYKEGGNAHCKFFRWLDE 64
>gi|9836908|gb|AAG00348.1|AF214005_1 polyprotein [banana streak virus]
Length = 543
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 448 CGKDAEIAVSHTSRNPDRPFYKCQRNLCHIWIWKDLVDDYFQN 490
>gi|219816436|gb|ACL37069.1| ribonuclease H [Banana streak virus]
Length = 117
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAE--DRKFSN 56
CG E+ SHT++NP+R F+KC+ +C + W + D F N
Sbjct: 31 CGKDAEIAVSHTSRNPDRPFYKCQRSLCHIWIWKDLVDDYFQN 73
>gi|15240751|ref|NP_196896.1| endonuclease VIII-like 3 [Arabidopsis thaliana]
gi|10177658|dbj|BAB11120.1| unnamed protein product [Arabidopsis thaliana]
gi|332004577|gb|AED91960.1| endonuclease VIII-like 3 [Arabidopsis thaliana]
Length = 415
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 1 MSSSTNESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKCRVCKN---FQWAEDRKFSNE 57
+ S T++ ++Q C GG E+ ++T +NP RKF+KC +N F+W + K ++E
Sbjct: 26 LKSYTDDPPPAIQ-CPCGGGFCEIKVANTRENPGRKFYKCPTAQNCCFFKWCD--KVTDE 82
Query: 58 KI 59
I
Sbjct: 83 DI 84
>gi|262392380|ref|YP_003284237.1| unnamed protein product [Sugarcane bacilliform virus]
gi|240114281|gb|ACS44708.1| ORF3 protein [Sugarcane bacilliform virus]
Length = 1792
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 10 NSLQVCNECGGQIELFTSHTTKNPNRKFWKCRV--CKNFQWAED-RKFSNEKIDLLVEEV 66
N L VC CG S T++NPNRKF CR C+ + W+++ ++ IDL EE
Sbjct: 1681 NPLLVCG-CGIPAVQRESRTSRNPNRKFVTCRDNRCRCWWWSDNIDDYTRRMIDLAQEEA 1739
Query: 67 RKLTLEIERLSDKFRLLHKELEHTQL 92
+ R H+EL+ +L
Sbjct: 1740 --------DYDEAMRRYHEELQEKKL 1757
>gi|297790628|ref|XP_002863199.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309033|gb|EFH39458.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 99
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 17 ECGGQIELFTSHTTKNPNRKFWKCRV--------CKNFQWAEDRKFSNEKIDLLVEE--V 66
ECG ++F S T KNPNR+F+ C++ CK F+W ++ K L+ + +
Sbjct: 22 ECGLPAKVFKSKTDKNPNRRFFGCQLYKEGGNAHCKFFRWLDEEVIGWPKRALVEAQSVI 81
Query: 67 RKLTLEIERLSDKF 80
++ +IE L+ F
Sbjct: 82 KEKAEKIEELNATF 95
>gi|15242367|ref|NP_197073.1| zinc ion binding protein [Arabidopsis thaliana]
gi|9755614|emb|CAC01768.1| putative protein [Arabidopsis thaliana]
gi|91806864|gb|ABE66159.1| hypothetical protein At5g15690 [Arabidopsis thaliana]
gi|332004809|gb|AED92192.1| zinc ion binding protein [Arabidopsis thaliana]
Length = 169
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKN-------FQWAEDR-----KFSNEKIDLLVEE 65
CG +I FTS T +NP R+F++C + F+W ++ K NEK + E
Sbjct: 28 CGEEIITFTSKTKENPYRRFYRCAIAMKRENEEHLFKWVDEALLDEIKMVNEKCKRVAEN 87
Query: 66 VRKLTLEI 73
+ L + +
Sbjct: 88 ISDLRMNV 95
>gi|116831489|gb|ABK28697.1| unknown [Arabidopsis thaliana]
Length = 170
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKN-------FQWAEDR-----KFSNEKIDLLVEE 65
CG +I FTS T +NP R+F++C + F+W ++ K NEK + E
Sbjct: 28 CGEEIITFTSKTKENPYRRFYRCAIAMKRENEEHLFKWVDEALLDEIKMVNEKCKRVAEN 87
Query: 66 VRKLTLEI 73
+ L + +
Sbjct: 88 ISDLRMNV 95
>gi|358347510|ref|XP_003637799.1| hypothetical protein MTR_103s0023 [Medicago truncatula]
gi|355503734|gb|AES84937.1| hypothetical protein MTR_103s0023 [Medicago truncatula]
Length = 143
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 3 SSTNESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKCRV------CKNFQWAED 51
S T S N L +C C + +F S++ +NP R++WKC CK + W ++
Sbjct: 5 SITQPSSNGLPMCG-CNKIMRMFISNSHENPKRRYWKCPTYMTASSCKLYIWDDE 58
>gi|332304384|ref|YP_004442824.1| polyprotein [Banana streak UA virus]
gi|331029450|gb|AEC49874.1| polyprotein [Banana streak UA virus]
Length = 1878
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRV--CKNFQWAE 50
CG + E SHT KNP+RKF++C+ C + W +
Sbjct: 1743 CGRKAEEVVSHTQKNPDRKFYRCKRSNCHTWVWKD 1777
>gi|357440655|ref|XP_003590605.1| hypothetical protein MTR_1g071660 [Medicago truncatula]
gi|355479653|gb|AES60856.1| hypothetical protein MTR_1g071660 [Medicago truncatula]
Length = 144
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 3 SSTNESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKCRV-------CKNFQWAED 51
S T S N L +C C + +F S++ +NP R++WKC CK + W ++
Sbjct: 5 SITQPSSNGLPMCG-CNKIMRMFISNSHENPKRRYWKCPTYMMSLLFCKLYIWDDE 59
>gi|9502160|gb|AAF88011.1| Hypothetical protein T10I18.4 [Arabidopsis thaliana]
Length = 156
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 17 ECGGQIELFTSHTTKNPNRKFWKCRVCKN---FQWAEDRKF-----SNEKIDLLVEEV-- 66
ECG + ++TS + NP R F++C ++ F+W ED + + K ++ E+
Sbjct: 27 ECGLDVVIYTSASKTNPGRPFFRCPTKQDDHLFKWVEDGVYEKVADALPKFSIIDSEINN 86
Query: 67 --RKLTLEIERL 76
++T+EIE L
Sbjct: 87 AKSEVTIEIEVL 98
>gi|225466079|ref|XP_002264670.1| PREDICTED: uncharacterized protein LOC100245024 [Vitis vinifera]
gi|296084189|emb|CBI24577.3| unnamed protein product [Vitis vinifera]
Length = 296
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 17 ECG-GQIELFTSHTTKNPNRKFWKCRV------CKNFQWAED-RKFSNEKIDLL 62
CG G + TS+T KNP RKF+KC + C FQW ++ SN+ +
Sbjct: 96 PCGLGTCLILTSNTQKNPGRKFYKCPLREENGGCGFFQWCDNSSGISNDAFGAI 149
>gi|90399131|emb|CAJ86060.1| H0821G03.11 [Oryza sativa Indica Group]
gi|125549983|gb|EAY95805.1| hypothetical protein OsI_17677 [Oryza sativa Indica Group]
Length = 173
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 5 TNESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKC 40
T S L C +CG Q + S + KNPNR ++KC
Sbjct: 36 TPSSSLPLVYCPDCGEQTVRYVSRSKKNPNRVYYKC 71
>gi|12322381|gb|AAG51213.1|AC051630_10 unknown protein; 62986-63538 [Arabidopsis thaliana]
Length = 160
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKN-------FQWAEDR-----KFSNEKIDLLVEE 65
CG +I FTS T +NP R+F++C + F+W ++ K NEK + E
Sbjct: 28 CGEEIITFTSKTKENPYRRFYRCAIAMKRENEEHLFKWVDEALLDEIKMVNEKCKRVAEN 87
Query: 66 VRKLTLEI 73
+ L + +
Sbjct: 88 ISDLRMNV 95
>gi|414873229|tpg|DAA51786.1| TPA: hypothetical protein ZEAMMB73_750935 [Zea mays]
Length = 369
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 18 CG-GQIELFTSHTTKNPNRKFWKCRV----CKNFQWAE 50
CG G + TS+T KNP RKF+KC + C F+W +
Sbjct: 148 CGVGSCLVLTSNTPKNPGRKFYKCPMRDGGCNFFEWCD 185
>gi|242042946|ref|XP_002459344.1| hypothetical protein SORBIDRAFT_02g002920 [Sorghum bicolor]
gi|241922721|gb|EER95865.1| hypothetical protein SORBIDRAFT_02g002920 [Sorghum bicolor]
Length = 140
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 2 SSSTNESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKCRV-----CKNFQWAED 51
SSS+ R +C C F S T KNPNR F KC C+ +QW ++
Sbjct: 5 SSSSYGGRVKRVLCPNCHVLANRFISRTEKNPNRAFHKCPYYAVGGCRYYQWEDE 59
>gi|218201738|gb|EEC84165.1| hypothetical protein OsI_30540 [Oryza sativa Indica Group]
Length = 897
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 2 SSSTNESRN-SLQV-CNECGGQIELFTSHTTKNPNRKFWKCR--VCKNFQWAED 51
S+ T S N S QV C CG L T++T N RKF+KC+ C F W +D
Sbjct: 762 STHTQSSGNASGQVHCTSCGEPCVLRTANTEANRGRKFYKCQDPSCGFFAWEDD 815
>gi|242044062|ref|XP_002459902.1| hypothetical protein SORBIDRAFT_02g014020 [Sorghum bicolor]
gi|241923279|gb|EER96423.1| hypothetical protein SORBIDRAFT_02g014020 [Sorghum bicolor]
Length = 140
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 2 SSSTNESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKCRV-----CKNFQWAED 51
SSS+ R +C C F S T KNPNR F KC C+ +QW ++
Sbjct: 5 SSSSYGGRVKRVLCPNCHVLANRFISRTEKNPNRTFHKCPYYAVGGCRYYQWEDE 59
>gi|224103685|ref|XP_002313153.1| predicted protein [Populus trichocarpa]
gi|222849561|gb|EEE87108.1| predicted protein [Populus trichocarpa]
Length = 305
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRV-----CKNFQWAED 51
CG +L S+TTKNP+R F+ C + C F+WA++
Sbjct: 171 CGRLAKLRVSNTTKNPSRLFYNCPMRIDSQCGYFEWADE 209
>gi|260828609|ref|XP_002609255.1| hypothetical protein BRAFLDRAFT_124758 [Branchiostoma floridae]
gi|229294611|gb|EEN65265.1| hypothetical protein BRAFLDRAFT_124758 [Branchiostoma floridae]
Length = 1898
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 52 RKFSNEKIDLLVEEVRKLTLEIERLSD----KFRLLHKELEHT 90
R S + L+ E +R L + I+R SD KFR+LH E++HT
Sbjct: 1586 RLLSTSHLQLMTESLRALDVYIQRCSDLDVTKFRVLHGEVQHT 1628
>gi|323450573|gb|EGB06454.1| hypothetical protein AURANDRAFT_65631 [Aureococcus anophagefferens]
Length = 2006
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 15 CNECGGQIELFTSHTTKNPNRKFWKCRVC 43
C CG E S + KNP RK++KC C
Sbjct: 1846 CGTCGAACEARVSRSEKNPGRKYYKCFPC 1874
>gi|268321248|gb|ACZ02411.1| polyprotein [Sugarcane bacilliform virus]
Length = 1837
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAEDRKFSNEKIDLLVEE 65
C +L TS T++NPNR+F+ C F W ++ID V+E
Sbjct: 1745 CNKPAKLMTSRTSRNPNRQFYSCDTKSCFTWV-----WKDQIDTFVQE 1787
>gi|116831115|gb|ABK28512.1| unknown [Arabidopsis thaliana]
Length = 157
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKN---FQWAEDRKF-----SNEKIDLLVEEVRKL 69
CG + ++TS + KNP R +++C + F+W ED + S K+ E+
Sbjct: 28 CGLDVVIYTSSSAKNPGRPYFRCPTRLDDHLFKWVEDGTYEVVVDSWPKLAGFDSELSAA 87
Query: 70 TLEIERLSDKFRLLHKELEHTQLRSK 95
E+ + + + KEL+ +RS+
Sbjct: 88 KSEVSVELEALQAMVKELKEEVMRSE 113
>gi|98961903|gb|ABF59281.1| hypothetical protein [Arabidopsis thaliana]
Length = 156
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKN---FQWAEDRKF-----SNEKIDLLVEEVRKL 69
CG + ++TS + KNP R +++C + F+W ED + S K+ E+
Sbjct: 28 CGLDVVIYTSSSAKNPGRPYFRCPTRLDDHLFKWVEDGTYEVVVDSWPKLAGFDSELSAA 87
Query: 70 TLEIERLSDKFRLLHKELEHTQLRSK 95
E+ + + + KEL+ +RS+
Sbjct: 88 KSEVSVELEALQAMVKELKEEVMRSE 113
>gi|317056962|ref|YP_004105429.1| DNA methylase N-4/N-6 domain-containing protein [Ruminococcus albus
7]
gi|315449231|gb|ADU22795.1| DNA methylase N-4/N-6 domain protein [Ruminococcus albus 7]
Length = 597
Score = 35.0 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 14 VCNECGGQIELFTSHTTKNPN--RKFWKCRVCKNFQWAEDRKFSNEK 58
VC ECG +I+ FT+ T++NP +K +C C+ ++ F+ E+
Sbjct: 161 VCPECGAEIDYFTNGTSRNPATFKKSVECHHCRKTCSVDEMTFATEE 207
>gi|403216708|emb|CCK71204.1| hypothetical protein KNAG_0G01460 [Kazachstania naganishii CBS
8797]
Length = 526
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 11/42 (26%)
Query: 19 GGQIELFTSHTTKNPNRKFWKCR-----------VCKNFQWA 49
G + L TS T+ NP +KFW CR CK FQWA
Sbjct: 485 GEEATLKTSKTSSNPGKKFWICRRSRGDDRNKEASCKFFQWA 526
>gi|242032759|ref|XP_002463774.1| hypothetical protein SORBIDRAFT_01g005940 [Sorghum bicolor]
gi|241917628|gb|EER90772.1| hypothetical protein SORBIDRAFT_01g005940 [Sorghum bicolor]
Length = 366
Score = 35.0 bits (79), Expect = 6.3, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 18 CG-GQIELFTSHTTKNPNRKFWKCRV----CKNFQWAE 50
CG G + TS+T KNP RKF+KC C F+W +
Sbjct: 142 CGAGTCLVLTSNTLKNPGRKFYKCPTRDGGCNFFEWCD 179
>gi|357476897|ref|XP_003608734.1| hypothetical protein MTR_4g101150 [Medicago truncatula]
gi|355509789|gb|AES90931.1| hypothetical protein MTR_4g101150 [Medicago truncatula]
Length = 170
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 4 STNESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKC-------RVCKNFQWAED 51
+N S + CN CG + +F ++TTKNP R F+ C R C F W ++
Sbjct: 33 DSNRSTIPVPDCN-CGLRTTMFKANTTKNPGRPFYTCPFHKNDPRNCGYFIWFDE 86
>gi|303389042|ref|XP_003072754.1| DNA topoisomerase III [Encephalitozoon intestinalis ATCC 50506]
gi|303301896|gb|ADM11394.1| DNA topoisomerase III [Encephalitozoon intestinalis ATCC 50506]
Length = 622
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKC----RVCKNFQWAE 50
CG + +L ++T N RKF+KC + CK FQW E
Sbjct: 586 CGFEPQLLVANTENNKGRKFFKCKKAYKPCKFFQWEE 622
>gi|15225743|ref|NP_178758.1| zinc ion binding protein [Arabidopsis thaliana]
gi|20197831|gb|AAM15270.1| hypothetical protein [Arabidopsis thaliana]
gi|20198267|gb|AAM15486.1| hypothetical protein [Arabidopsis thaliana]
gi|330250960|gb|AEC06054.1| zinc ion binding protein [Arabidopsis thaliana]
Length = 143
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAEDRKFSNEKIDLLVEEVRKLTLEIERLS 77
CG + L TS T KNP R F+ CR + + ++E ++VEE+ + +I+ L
Sbjct: 14 CGEDVVLRTSKTVKNPRRLFYACRCGEENGSGHLFRLTDE---VMVEEMEDILPKIDELE 70
Query: 78 DKFRLLHKELEHTQ 91
L K L+ +
Sbjct: 71 GASLTLQKGLQALE 84
>gi|22002133|gb|AAM88617.1| hypothetical protein [Oryza sativa Japonica Group]
gi|22213184|gb|AAM94524.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31433230|gb|AAP54772.1| GRF zinc finger family protein [Oryza sativa Japonica Group]
Length = 132
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 12 LQVCNECGGQIELFTSHTTKNPNRKFWKCR-------VCKNFQW 48
L C CG Q+ TS T KNPN+ F KC C+ F W
Sbjct: 19 LGKCPLCGTQLVARTSRTPKNPNKNFVKCPNLENTPYACRFFMW 62
>gi|297790518|ref|XP_002863144.1| hypothetical protein ARALYDRAFT_497055 [Arabidopsis lyrata subsp.
lyrata]
gi|297851918|ref|XP_002893840.1| hypothetical protein ARALYDRAFT_473620 [Arabidopsis lyrata subsp.
lyrata]
gi|297308978|gb|EFH39403.1| hypothetical protein ARALYDRAFT_497055 [Arabidopsis lyrata subsp.
lyrata]
gi|297339682|gb|EFH70099.1| hypothetical protein ARALYDRAFT_473620 [Arabidopsis lyrata subsp.
lyrata]
Length = 142
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAEDRKFSNEKIDLLVEEVRKLTLEIERLS 77
CG + L TS T KNP R F+ CR + K+++E +VEE+ + +I+ L
Sbjct: 14 CGEDVVLRTSKTIKNPGRLFYACRYGEENGRGHLFKWTDET---MVEEMEDIIPKIDELE 70
Query: 78 DKFRLLHKELE 88
L K L+
Sbjct: 71 RASLTLQKGLQ 81
>gi|395332969|gb|EJF65347.1| hypothetical protein DICSQDRAFT_159493 [Dichomitus squalens
LYAD-421 SS1]
Length = 641
Score = 34.7 bits (78), Expect = 7.9, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 14 VCNECGGQIELFTSHTTKNPNRKFWKC-------RVCKNFQWAED 51
VC + + FTSHT NP R+F+ C C F WA+D
Sbjct: 26 VCYRHWERAQQFTSHTVANPGREFYVCGKPRDDLERCSFFVWADD 70
>gi|300706240|ref|XP_002995407.1| hypothetical protein NCER_101713 [Nosema ceranae BRL01]
gi|239604490|gb|EEQ81736.1| hypothetical protein NCER_101713 [Nosema ceranae BRL01]
Length = 805
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 15 CNECGGQIELFTSHTTKNPNRKFWKC----RVCKNFQWAE 50
CN C + ++ S T N NRKF+KC + CK F+WAE
Sbjct: 763 CN-CNFEPKILMSFTEANKNRKFFKCKKAYKPCKFFKWAE 801
>gi|357465305|ref|XP_003602934.1| hypothetical protein MTR_3g100540 [Medicago truncatula]
gi|355491982|gb|AES73185.1| hypothetical protein MTR_3g100540 [Medicago truncatula]
Length = 193
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 10/44 (22%)
Query: 15 CNECGGQIELFTSHTTKNPNRKFWKCRV-------CKNFQWAED 51
CNE ++L+ S+T +NP RKFW+CR CK F W ++
Sbjct: 22 CNEV---MKLWVSNTDENPKRKFWRCRNFWENDYHCKLFIWDDE 62
>gi|4680186|gb|AAD27554.1|AF111709_8 unknown [Oryza sativa Indica Group]
Length = 314
Score = 34.3 bits (77), Expect = 9.0, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 1 MSSSTN--ESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKCRV-----CKNFQWAED 51
MS ++N + R +C CG F S T KN NR F KC C+ +QW ++
Sbjct: 25 MSQASNSYDGRVKRVLCPNCGVLANRFMSTTEKNNNRVFHKCPYFAIGGCQYYQWEDE 82
>gi|396081254|gb|AFN82872.1| DNA topoisomerase II [Encephalitozoon romaleae SJ-2008]
Length = 622
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 8 SRNSLQVCNECGGQIELFTSHTTKNPNRKFWKC----RVCKNFQW 48
SR +V CG + +L ++T N RKF+KC + CK FQW
Sbjct: 576 SRKDEEVKCFCGFEPQLLVANTENNRGRKFYKCKKAYKPCKFFQW 620
>gi|297832476|ref|XP_002884120.1| hypothetical protein ARALYDRAFT_900202 [Arabidopsis lyrata subsp.
lyrata]
gi|297329960|gb|EFH60379.1| hypothetical protein ARALYDRAFT_900202 [Arabidopsis lyrata subsp.
lyrata]
Length = 164
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 19/84 (22%)
Query: 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRV--------CKNFQWAEDRKFSNEKIDLLVE 64
+VC+ G +++ S T KNPNR+F+ C++ CK F+W E+ + L+E
Sbjct: 19 KVCDY-GLPAKIYKSKTEKNPNRRFFGCQLYKEGSNAHCKFFRWFEEEELKRLPKSSLIE 77
Query: 65 E----------VRKLTLEIERLSD 78
+ +LT+ I+ L D
Sbjct: 78 AEAEINAKNKMIDQLTVTIKELRD 101
>gi|242087561|ref|XP_002439613.1| hypothetical protein SORBIDRAFT_09g016590 [Sorghum bicolor]
gi|241944898|gb|EES18043.1| hypothetical protein SORBIDRAFT_09g016590 [Sorghum bicolor]
Length = 140
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 2 SSSTNESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKCRV-----CKNFQWAED 51
SSS+ + +C C F S T KNPNR F KC C+ +QW ++
Sbjct: 5 SSSSYGGKVKRVLCPNCHVLANRFISRTEKNPNRAFHKCPYYAVGGCRYYQWEDE 59
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.130 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,469,413,690
Number of Sequences: 23463169
Number of extensions: 50383498
Number of successful extensions: 226162
Number of sequences better than 100.0: 141
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 226093
Number of HSP's gapped (non-prelim): 150
length of query: 99
length of database: 8,064,228,071
effective HSP length: 68
effective length of query: 31
effective length of database: 6,468,732,579
effective search space: 200530709949
effective search space used: 200530709949
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)