BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041503
         (99 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2F9Z|C Chain C, Complex Between The Chemotaxis Deamidase Ched And The
          Chemotaxis Phosphatase Chec From Thermotoga Maritima
 pdb|2F9Z|D Chain D, Complex Between The Chemotaxis Deamidase Ched And The
          Chemotaxis Phosphatase Chec From Thermotoga Maritima
          Length = 159

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 53 KFSNEKIDLLVEEVRKLTLEIERLSDKF 80
          K+++  +  LVEE++K+  ++ERL  K 
Sbjct: 61 KYADTAVKTLVEELKKMGAKVERLEAKI 88


>pdb|1GO4|E Chain E, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
          Binding Motif In Mad1 And Cdc20.
 pdb|1GO4|F Chain F, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
          Binding Motif In Mad1 And Cdc20.
 pdb|1GO4|G Chain G, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
          Binding Motif In Mad1 And Cdc20.
 pdb|1GO4|H Chain H, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
          Binding Motif In Mad1 And Cdc20
          Length = 100

 Score = 25.4 bits (54), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 54 FSNEKIDLLVEEVRKLTLEIERLSDKFRLLHKELEHTQLRSKY 96
          FS E+ D L  +V +L  E  RL ++ R+L  +LE   L+  Y
Sbjct: 9  FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDY 51


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.130    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,851,374
Number of Sequences: 62578
Number of extensions: 97116
Number of successful extensions: 314
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 14
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)