BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041503
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZS96|Y4478_ARATH Uncharacterized protein At4g04775 OS=Arabidopsis thaliana
GN=At4g04775 PE=2 SV=1
Length = 160
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 18 CGGQIELFTSHTTKNPNRKFWKCRVCKN-------FQWAEDR-----KFSNEKIDLLVEE 65
CG +I FTS T +NP R+F++C + F+W ++ K NEK +VE
Sbjct: 28 CGEEIITFTSKTKENPYRRFYRCAIAMKRENEEHLFKWVDEALLDEIKMVNEKCKRVVEN 87
Query: 66 VRKLTLEI 73
+ L + +
Sbjct: 88 ISDLRMNV 95
>sp|B1L9E5|AROA_THESQ 3-phosphoshikimate 1-carboxyvinyltransferase OS=Thermotoga sp.
(strain RQ2) GN=aroA PE=3 SV=1
Length = 421
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 50 EDRKFSNEKIDLLVEEVRKLTLEIERLSDKFRLLHKE 86
E RK +++I +LVE ++L +EIE D F+++ K+
Sbjct: 330 ELRKKESDRIRVLVENFKRLGVEIEEFKDGFKIVGKQ 366
>sp|A5IK73|AROA_THEP1 3-phosphoshikimate 1-carboxyvinyltransferase OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=aroA PE=3 SV=1
Length = 421
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 50 EDRKFSNEKIDLLVEEVRKLTLEIERLSDKFRLLHKE 86
E RK +++I +LVE ++L +EIE D F+++ K+
Sbjct: 330 ELRKKESDRIRVLVENFKRLGVEIEEFKDGFKIVGKQ 366
>sp|B9KBV6|AROA_THENN 3-phosphoshikimate 1-carboxyvinyltransferase OS=Thermotoga
neapolitana (strain ATCC 49049 / DSM 4359 / NS-E)
GN=aroA PE=3 SV=1
Length = 421
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 50 EDRKFSNEKIDLLVEEVRKLTLEIERLSDKFRLLHKE 86
E RK +++I +LVE ++L +EIE D F+++ K+
Sbjct: 330 ELRKKESDRIRVLVENFKRLGVEIEEFKDGFKIVGKQ 366
>sp|Q9WYI0|AROA_THEMA 3-phosphoshikimate 1-carboxyvinyltransferase OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=aroA PE=3 SV=1
Length = 410
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 50 EDRKFSNEKIDLLVEEVRKLTLEIERLSDKFRLLHKE 86
E RK +++I +LVE ++L +EIE D F+++ K+
Sbjct: 319 ELRKKESDRIRVLVENFKRLGVEIEEFKDGFKIVGKQ 355
>sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1
SV=1
Length = 520
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 11/42 (26%)
Query: 19 GGQIELFTSHTTKNPNRKFWKCR-----------VCKNFQWA 49
G + L TS T+ NP RKFW C+ C FQW
Sbjct: 479 GEESMLKTSKTSANPGRKFWICKRSRGDSNNTESSCGFFQWV 520
>sp|Q9LFP5|PLY19_ARATH Probable pectate lyase 19 OS=Arabidopsis thaliana GN=At5g15110 PE=2
SV=1
Length = 472
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 1 MSSSTNESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAEDRK 53
+ SSTN +R SL+ + G +L T NP K W+CR WA+ RK
Sbjct: 92 LGSSTNSTRRSLRGKGK-GKWSKLKGPCTASNPIDKCWRCRS----DWAKRRK 139
>sp|Q8IYN0|ZN100_HUMAN Zinc finger protein 100 OS=Homo sapiens GN=ZNF100 PE=2 SV=2
Length = 542
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 15 CNECGGQIELF---TSHTTKNPNRKFWKCRVC-KNFQWA 49
C ECG F T H T + KF+KC C K F W+
Sbjct: 375 CEECGKAFYRFSYLTKHKTSHTGEKFYKCEECGKGFNWS 413
>sp|Q89WI2|SYFB_BRAJA Phenylalanine--tRNA ligase beta subunit OS=Bradyrhizobium
japonicum (strain USDA 110) GN=pheT PE=3 SV=1
Length = 802
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 46 FQWAEDRKFSNEKIDLLVEEVRKLTLEIERLSDKFRLL 83
W +D ++E +D L E++ + LE+E + DK + L
Sbjct: 5 LSWLKDHLETDEPLDRLAEKLTMIGLEVENIEDKAKAL 42
>sp|Q4A5S7|RPOB_MYCS5 DNA-directed RNA polymerase subunit beta OS=Mycoplasma synoviae
(strain 53) GN=rpoB PE=3 SV=2
Length = 1202
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 52 RKFSNEKIDLLVEEV-------RKLTLEIERLSDKFRLLHKELEHTQLRSK 95
+ F N+KI+ L+ E+ ++ +LE E+ S KF L K+ EH L+ K
Sbjct: 43 QDFINKKIEELLNEIYPIEASNKEASLEYEKKSVKFELPFKKAEHENLQIK 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,782,750
Number of Sequences: 539616
Number of extensions: 1265309
Number of successful extensions: 6564
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 6463
Number of HSP's gapped (non-prelim): 146
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)