Query 041503
Match_columns 99
No_of_seqs 110 out of 277
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 13:04:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qyp_A RNA polymerase II; tran 96.5 0.0021 7.3E-08 38.3 3.3 38 12-50 15-55 (57)
2 1tfi_A Transcriptional elongat 94.7 0.024 8.3E-07 33.4 2.8 36 10-45 7-45 (50)
3 3h0g_I DNA-directed RNA polyme 92.5 0.1 3.4E-06 35.0 3.2 36 13-49 73-111 (113)
4 1twf_I B12.6, DNA-directed RNA 92.3 0.17 5.7E-06 34.3 4.2 38 13-51 73-113 (122)
5 3j20_Y 30S ribosomal protein S 92.3 0.11 3.6E-06 30.6 2.8 30 13-49 20-49 (50)
6 3po3_S Transcription elongatio 92.1 0.08 2.7E-06 38.2 2.5 34 12-45 137-173 (178)
7 2yy0_A C-MYC-binding protein; 92.0 0.33 1.1E-05 28.9 4.8 32 57-88 19-50 (53)
8 2gai_A DNA topoisomerase I; zi 90.6 0.052 1.8E-06 45.8 0.2 34 14-51 574-611 (633)
9 1lv3_A Hypothetical protein YA 90.1 0.15 5.1E-06 32.2 2.0 37 10-52 7-47 (68)
10 1pqv_S STP-alpha, transcriptio 89.5 0.22 7.6E-06 38.5 3.0 34 12-45 268-304 (309)
11 3o9x_A Uncharacterized HTH-typ 87.2 0.24 8.1E-06 32.5 1.6 39 13-51 3-50 (133)
12 3cng_A Nudix hydrolase; struct 86.3 0.68 2.3E-05 31.8 3.6 34 13-49 4-37 (189)
13 3qt1_I DNA-directed RNA polyme 86.0 0.15 5E-06 35.5 0.0 36 13-49 93-131 (133)
14 1k1f_A Breakpoint cluster regi 85.8 1.9 6.4E-05 27.3 5.1 31 66-96 28-58 (72)
15 2epr_A POZ-, at HOOK-, and zin 85.3 0.25 8.7E-06 26.3 0.8 42 3-44 3-47 (48)
16 2yy0_A C-MYC-binding protein; 84.8 2.7 9.4E-05 24.8 5.3 31 64-94 19-49 (53)
17 1vq8_Z 50S ribosomal protein L 84.8 0.52 1.8E-05 30.4 2.2 26 13-45 28-53 (83)
18 4a17_Y RPL37A, 60S ribosomal p 83.6 6 0.0002 26.6 7.1 27 13-46 37-63 (103)
19 1go4_E MAD1 (mitotic arrest de 82.6 1.3 4.5E-05 29.6 3.6 43 55-97 10-52 (100)
20 3iz5_m 60S ribosomal protein L 80.3 7.8 0.00027 25.4 6.6 32 13-52 37-68 (92)
21 3izc_m 60S ribosomal protein R 79.6 8.7 0.0003 25.2 6.7 32 13-52 37-68 (92)
22 2fiy_A Protein FDHE homolog; F 79.6 0.94 3.2E-05 35.2 2.3 30 12-41 182-212 (309)
23 1ffk_W Ribosomal protein L37AE 79.4 0.89 3E-05 28.8 1.8 26 13-45 28-53 (73)
24 1x62_A C-terminal LIM domain p 78.5 1.7 5.8E-05 26.1 2.8 35 7-44 10-48 (79)
25 1k3x_A Endonuclease VIII; hydr 78.4 1.2 4E-05 33.4 2.5 27 13-44 235-261 (262)
26 2l5g_B Putative uncharacterize 78.4 5.4 0.00018 22.9 4.7 27 57-83 9-35 (42)
27 4dzn_A Coiled-coil peptide CC- 78.4 5.9 0.0002 21.2 4.6 25 59-83 4-28 (33)
28 3u6p_A Formamidopyrimidine-DNA 78.3 1.2 4.1E-05 33.7 2.5 27 13-44 246-272 (273)
29 2xzf_A Formamidopyrimidine-DNA 78.1 1.2 4.1E-05 33.6 2.4 27 13-44 243-269 (271)
30 2ep0_A Zinc finger protein 28 78.1 0.84 2.9E-05 23.7 1.2 34 10-43 10-46 (46)
31 1k82_A Formamidopyrimidine-DNA 78.0 1.2 4.2E-05 33.5 2.5 27 13-44 241-267 (268)
32 1t2k_D Cyclic-AMP-dependent tr 78.0 7.1 0.00024 23.0 5.5 30 59-88 24-53 (61)
33 1t6f_A Geminin; coiled-coil, c 77.9 3.8 0.00013 22.9 3.8 21 63-83 13-33 (37)
34 2eps_A POZ-, at HOOK-, and zin 77.9 0.61 2.1E-05 25.5 0.6 35 10-44 10-48 (54)
35 1dxg_A Desulforedoxin; non-hem 77.7 1.1 3.6E-05 24.3 1.5 14 35-48 4-17 (36)
36 1vd4_A Transcription initiatio 77.7 0.27 9.4E-06 28.0 -1.0 41 12-52 14-55 (62)
37 2wt7_A Proto-oncogene protein 77.5 7.3 0.00025 23.2 5.5 30 59-88 25-54 (63)
38 1ee8_A MUTM (FPG) protein; bet 77.4 1.3 4.6E-05 33.3 2.5 27 13-44 236-262 (266)
39 1ci6_A Transcription factor AT 76.9 7.1 0.00024 23.4 5.3 29 60-88 26-54 (63)
40 3cc2_Z 50S ribosomal protein L 76.5 1.4 4.9E-05 30.2 2.2 27 13-46 61-87 (116)
41 3kin_B Kinesin heavy chain; mo 76.4 5.1 0.00017 26.7 5.0 31 60-90 85-115 (117)
42 1dl6_A Transcription factor II 75.8 4.6 0.00016 23.9 4.1 33 10-48 9-41 (58)
43 1a93_B MAX protein, coiled coi 75.4 4.2 0.00015 22.3 3.6 26 58-83 8-33 (34)
44 2kdx_A HYPA, hydrogenase/ureas 75.1 0.95 3.3E-05 30.0 1.0 25 12-45 73-98 (119)
45 2cot_A Zinc finger protein 435 74.7 1.5 5.1E-05 25.2 1.7 33 12-44 18-53 (77)
46 1jnm_A Proto-oncogene C-JUN; B 74.3 9.3 0.00032 22.6 5.3 30 59-88 24-53 (62)
47 1zxa_A CGMP-dependent protein 73.2 4.7 0.00016 25.1 3.8 22 62-83 30-51 (67)
48 1pft_A TFIIB, PFTFIIBN; N-term 73.0 2.6 9E-05 23.7 2.5 30 12-47 5-34 (50)
49 4etp_A Kinesin-like protein KA 72.3 7.5 0.00026 30.8 5.8 32 58-89 4-35 (403)
50 1twf_I B12.6, DNA-directed RNA 72.1 2.7 9.2E-05 28.2 2.7 37 12-51 4-40 (122)
51 3j21_i 50S ribosomal protein L 71.5 2.5 8.6E-05 27.4 2.4 27 13-46 36-62 (83)
52 1k81_A EIF-2-beta, probable tr 71.4 2.6 9E-05 22.9 2.1 32 13-48 1-32 (36)
53 2k4x_A 30S ribosomal protein S 70.7 3.2 0.00011 24.5 2.5 31 13-50 19-49 (55)
54 1d0q_A DNA primase; zinc-bindi 70.5 2.1 7.3E-05 27.6 1.9 28 13-44 38-65 (103)
55 3a43_A HYPD, hydrogenase nicke 70.2 1.5 5E-05 30.2 1.1 35 12-46 70-116 (139)
56 1gd2_E Transcription factor PA 69.9 8.2 0.00028 23.9 4.4 21 68-88 47-67 (70)
57 1nlw_A MAD protein, MAX dimeri 69.6 12 0.0004 23.4 5.2 30 59-88 49-78 (80)
58 2epq_A POZ-, at HOOK-, and zin 69.6 0.51 1.8E-05 24.5 -1.1 34 11-44 9-45 (45)
59 1nkp_B MAX protein, MYC proto- 69.5 12 0.00041 23.0 5.2 26 62-87 52-77 (83)
60 2dgc_A Protein (GCN4); basic d 68.5 8.4 0.00029 23.2 4.2 27 61-87 34-60 (63)
61 2fiy_A Protein FDHE homolog; F 68.5 3.2 0.00011 32.1 2.8 41 12-52 222-269 (309)
62 1wt6_A Myotonin-protein kinase 68.2 21 0.00071 23.0 6.2 9 59-67 16-24 (81)
63 1x6e_A Zinc finger protein 24; 68.2 0.98 3.4E-05 25.8 -0.1 34 11-44 13-49 (72)
64 3jyw_9 60S ribosomal protein L 68.1 2.4 8.1E-05 26.8 1.6 26 13-45 27-52 (72)
65 3h0g_I DNA-directed RNA polyme 68.1 5 0.00017 26.5 3.4 37 13-52 5-41 (113)
66 3ga8_A HTH-type transcriptiona 67.2 3.5 0.00012 25.2 2.3 39 13-51 3-50 (78)
67 2w83_C C-JUN-amino-terminal ki 66.9 4.9 0.00017 25.8 3.0 20 69-88 56-75 (77)
68 2elz_A Zinc finger protein 224 66.7 1.9 6.3E-05 22.3 0.8 32 12-43 12-46 (46)
69 2yqq_A Zinc finger HIT domain- 66.4 5.3 0.00018 23.9 2.9 30 2-45 2-31 (56)
70 3twe_A Alpha4H; unknown functi 66.3 11 0.00036 19.4 3.6 20 68-87 5-24 (27)
71 1hjb_A Ccaat/enhancer binding 66.0 17 0.00057 23.4 5.5 24 65-88 44-67 (87)
72 4esj_A Type-2 restriction enzy 65.7 3.3 0.00011 31.9 2.3 28 13-44 35-63 (257)
73 2ct7_A Ring finger protein 31; 65.6 5.5 0.00019 24.8 3.0 25 13-44 26-50 (86)
74 2con_A RUH-035 protein, NIN on 65.4 4.1 0.00014 26.0 2.4 25 11-35 29-53 (79)
75 3nmd_A CGMP dependent protein 65.1 6.4 0.00022 24.8 3.2 21 67-87 43-63 (72)
76 2el6_A Zinc finger protein 268 65.0 1.6 5.6E-05 22.5 0.4 32 12-43 12-46 (46)
77 2epz_A Zinc finger protein 28 64.5 3.1 0.00011 21.3 1.4 32 12-43 12-46 (46)
78 4ayb_P DNA-directed RNA polyme 64.4 4.5 0.00016 23.8 2.2 14 11-24 22-35 (48)
79 2epu_A Zinc finger protein 32; 64.1 1.9 6.5E-05 22.2 0.5 10 12-21 12-21 (45)
80 3mq7_A Bone marrow stromal ant 63.8 14 0.00048 25.4 5.0 26 65-90 72-97 (121)
81 3nmd_A CGMP dependent protein 63.2 22 0.00075 22.3 5.5 24 65-88 34-57 (72)
82 2yf2_A C4B binding protein; im 63.2 12 0.00042 22.8 4.1 25 65-89 35-59 (65)
83 2wuj_A Septum site-determining 62.1 8.2 0.00028 22.7 3.2 21 68-88 31-51 (57)
84 2bzb_A Conserved domain protei 61.9 7.5 0.00026 23.6 3.0 23 74-98 4-26 (62)
85 3viq_B Mating-type switching p 61.7 8.9 0.00031 24.9 3.5 29 59-87 3-31 (85)
86 4gkw_A Spindle assembly abnorm 61.2 20 0.00068 25.5 5.5 33 63-95 104-136 (167)
87 2l5g_B Putative uncharacterize 60.8 21 0.00071 20.4 4.7 32 60-91 5-39 (42)
88 2au3_A DNA primase; zinc ribbo 60.4 3.8 0.00013 32.1 1.9 28 13-44 35-62 (407)
89 1dh3_A Transcription factor CR 59.7 7.6 0.00026 22.8 2.7 24 61-84 26-49 (55)
90 2ee8_A Protein ODD-skipped-rel 59.6 1.5 5E-05 26.5 -0.5 32 13-44 18-52 (106)
91 2ytq_A Zinc finger protein 268 59.1 4.6 0.00016 20.7 1.5 32 12-43 12-46 (46)
92 1gu4_A CAAT/enhancer binding p 58.8 28 0.00097 21.8 5.5 24 65-88 44-67 (78)
93 1uii_A Geminin; human, DNA rep 58.6 28 0.00096 22.4 5.5 25 65-89 47-71 (83)
94 2jee_A YIIU; FTSZ, septum, coi 58.5 28 0.00097 22.2 5.5 21 58-78 21-41 (81)
95 2dar_A PDZ and LIM domain prot 58.5 8.3 0.00028 23.5 2.9 29 13-44 26-58 (90)
96 1p91_A Ribosomal RNA large sub 57.7 6.1 0.00021 27.7 2.4 28 13-49 3-30 (269)
97 4etp_A Kinesin-like protein KA 56.9 29 0.00098 27.4 6.4 36 58-93 11-46 (403)
98 2zqm_A Prefoldin beta subunit 56.8 28 0.00096 22.0 5.4 25 65-89 78-102 (117)
99 1g6u_A Domain swapped dimer; d 56.5 22 0.00074 20.4 4.2 25 59-83 22-46 (48)
100 3u06_A Protein claret segregat 56.1 26 0.00089 27.9 6.1 31 60-90 6-36 (412)
101 3a7o_A Autophagy protein 16; c 56.1 32 0.0011 21.8 5.3 30 59-88 20-49 (75)
102 1l8d_A DNA double-strand break 55.5 30 0.001 21.9 5.3 27 61-87 68-94 (112)
103 1l8d_A DNA double-strand break 55.3 30 0.001 21.9 5.3 33 56-88 70-102 (112)
104 2wg5_A General control protein 55.3 12 0.00041 24.6 3.4 23 67-89 10-32 (109)
105 3v2d_5 50S ribosomal protein L 55.1 4.1 0.00014 24.6 1.0 24 12-47 30-53 (60)
106 2lce_A B-cell lymphoma 6 prote 54.9 1.7 5.8E-05 24.8 -0.8 34 11-44 16-52 (74)
107 2c0s_A Conserved domain protei 54.9 13 0.00045 22.6 3.3 24 74-99 4-27 (64)
108 2ene_A Zinc finger protein 347 54.6 2.6 8.8E-05 21.7 -0.0 31 13-43 13-46 (46)
109 2cor_A Pinch protein; LIM doma 54.5 17 0.00059 21.6 3.8 33 9-44 12-48 (79)
110 3h0g_L DNA-directed RNA polyme 54.1 7.1 0.00024 23.9 2.0 27 13-47 22-48 (63)
111 1fxk_C Protein (prefoldin); ar 54.1 31 0.0011 22.5 5.4 34 57-90 95-128 (133)
112 3mud_A DNA repair protein XRCC 54.0 28 0.00096 25.2 5.5 31 60-90 138-168 (175)
113 3pwf_A Rubrerythrin; non heme 53.8 6.5 0.00022 27.7 2.0 22 13-44 139-160 (170)
114 3trt_A Vimentin; cytoskeleton, 53.6 23 0.00078 21.3 4.3 25 65-89 50-74 (77)
115 2en8_A Zinc finger protein 224 53.3 2.5 8.6E-05 21.6 -0.2 31 13-43 13-46 (46)
116 1nkp_A C-MYC, MYC proto-oncoge 53.2 37 0.0013 21.3 5.4 27 62-88 57-83 (88)
117 2yf2_A C4B binding protein; im 53.2 33 0.0011 20.9 4.8 24 64-88 28-51 (65)
118 2zjr_Z 50S ribosomal protein L 52.8 4.1 0.00014 24.6 0.7 24 12-47 30-53 (60)
119 4e61_A Protein BIM1; EB1-like 52.5 34 0.0012 22.9 5.3 25 60-84 7-31 (106)
120 2ytr_A Zinc finger protein 347 52.4 6.7 0.00023 19.9 1.5 32 12-43 12-46 (46)
121 2epx_A Zinc finger protein 28 52.4 6.3 0.00021 20.0 1.3 32 12-43 12-47 (47)
122 2w6a_A ARF GTPase-activating p 52.3 35 0.0012 20.9 4.9 19 68-86 38-56 (63)
123 2ysp_A Zinc finger protein 224 52.1 4.4 0.00015 20.7 0.7 31 13-43 13-46 (46)
124 3v86_A De novo design helix; c 51.7 23 0.0008 18.1 3.8 19 70-88 6-24 (27)
125 2ytt_A Zinc finger protein 473 51.7 1.5 5E-05 22.7 -1.4 10 12-21 12-21 (46)
126 3ra3_A P1C; coiled coil domain 51.6 17 0.00059 18.7 2.9 25 60-84 3-27 (28)
127 1zke_A Hypothetical protein HP 51.6 12 0.00042 24.1 2.9 22 61-86 56-77 (83)
128 3s9g_A Protein hexim1; cyclin 51.6 26 0.0009 23.5 4.6 27 66-95 67-93 (104)
129 2lv2_A Insulinoma-associated p 51.6 4.7 0.00016 24.9 0.9 32 13-44 29-63 (85)
130 2wt7_B Transcription factor MA 51.5 38 0.0013 22.0 5.3 29 60-88 51-79 (90)
131 2em5_A ZFP-95, zinc finger pro 51.3 3 0.0001 21.5 -0.1 32 12-43 12-46 (46)
132 3hnw_A Uncharacterized protein 51.1 41 0.0014 23.0 5.7 21 72-92 83-103 (138)
133 2eop_A Zinc finger protein 268 50.9 3.3 0.00011 21.2 0.0 31 13-43 13-46 (46)
134 1jcd_A Major outer membrane li 50.4 36 0.0012 19.9 5.7 31 58-88 5-35 (52)
135 1vk6_A NADH pyrophosphatase; 1 50.4 8.6 0.00029 28.6 2.3 29 13-48 108-136 (269)
136 1fxk_A Prefoldin; archaeal pro 50.3 36 0.0012 21.1 5.0 29 63-91 71-99 (107)
137 2zkr_2 60S ribosomal protein L 50.3 10 0.00035 25.2 2.4 67 4-81 6-79 (97)
138 3u5e_g 60S ribosomal protein L 50.2 2.8 9.6E-05 28.9 -0.4 31 13-43 42-84 (121)
139 1x5w_A Zinc finger protein 64, 49.9 3.7 0.00013 23.0 0.2 33 12-44 9-44 (70)
140 3f2b_A DNA-directed DNA polyme 49.7 11 0.00039 33.7 3.3 24 29-52 494-517 (1041)
141 1t2k_D Cyclic-AMP-dependent tr 49.6 36 0.0012 19.7 5.1 19 68-86 26-44 (61)
142 2adr_A ADR1; transcription reg 49.1 2.9 9.9E-05 22.6 -0.4 33 13-45 3-38 (60)
143 2l5g_A GPS2 protein, G protein 49.1 27 0.00091 19.5 3.6 21 66-86 10-30 (38)
144 1dip_A Delta-sleep-inducing pe 49.1 5.5 0.00019 25.5 0.9 24 63-86 14-37 (78)
145 1yuz_A Nigerythrin; rubrythrin 49.0 7.4 0.00025 28.1 1.7 23 12-44 171-193 (202)
146 2lw1_A ABC transporter ATP-bin 49.0 31 0.0011 21.5 4.5 23 65-87 23-45 (89)
147 3w0f_A Endonuclease 8-like 3; 48.8 11 0.00039 28.9 2.8 28 14-44 253-280 (287)
148 2zqm_A Prefoldin beta subunit 48.8 48 0.0016 20.8 5.6 34 57-90 77-110 (117)
149 2ytn_A Zinc finger protein 347 48.7 3.3 0.00011 21.2 -0.2 31 13-43 13-46 (46)
150 2em7_A Zinc finger protein 224 48.6 5.3 0.00018 20.4 0.6 31 13-43 13-46 (46)
151 1wlq_A Geminin; coiled-coil; 2 48.3 42 0.0014 21.6 5.0 19 65-83 46-64 (83)
152 1wlq_A Geminin; coiled-coil; 2 47.9 53 0.0018 21.1 5.5 25 65-89 39-63 (83)
153 2eon_A ZFP-95, zinc finger pro 47.8 9.4 0.00032 19.5 1.6 30 12-41 12-44 (46)
154 2ytg_A ZFP-95, zinc finger pro 47.8 3.2 0.00011 21.2 -0.3 31 13-43 13-46 (46)
155 2eq0_A Zinc finger protein 347 47.7 3.6 0.00012 21.1 -0.2 8 13-20 13-20 (46)
156 1bbo_A Human enhancer-binding 47.5 2 7E-05 22.9 -1.2 32 13-44 2-36 (57)
157 2el4_A Zinc finger protein 268 47.3 3.1 0.00011 21.2 -0.4 8 13-20 13-20 (46)
158 2em9_A Zinc finger protein 224 47.1 2.8 9.5E-05 21.4 -0.7 31 13-43 13-46 (46)
159 1wle_A Seryl-tRNA synthetase; 46.8 32 0.0011 28.2 5.3 29 61-89 120-148 (501)
160 1ses_A Seryl-tRNA synthetase; 46.7 33 0.0011 27.2 5.3 31 60-90 67-97 (421)
161 2dmi_A Teashirt homolog 3; zin 46.5 13 0.00045 22.4 2.4 13 32-44 45-57 (115)
162 2xu6_A MDV1 coiled coil; prote 46.3 30 0.001 21.8 4.0 16 62-77 19-34 (72)
163 3ir9_A Peptide chain release f 45.9 13 0.00045 26.0 2.6 37 13-49 79-115 (166)
164 2emf_A Zinc finger protein 484 45.9 7.3 0.00025 19.8 1.0 31 13-43 13-46 (46)
165 2jee_A YIIU; FTSZ, septum, coi 45.9 56 0.0019 20.8 5.8 24 66-89 22-45 (81)
166 2e2z_A TIM15; protein import, 45.3 4.3 0.00015 27.1 -0.1 35 13-47 14-48 (100)
167 2qkd_A Zinc finger protein ZPR 45.2 13 0.00044 30.0 2.7 32 13-45 221-257 (404)
168 3m9b_A Proteasome-associated A 44.9 21 0.00072 27.2 3.7 22 68-89 72-93 (251)
169 2eme_A Zinc finger protein 473 44.8 2.7 9.3E-05 21.5 -0.9 9 13-21 13-21 (46)
170 1wep_A PHF8; structural genomi 44.6 26 0.00088 21.2 3.5 36 2-49 2-37 (79)
171 1g47_A Pinch protein; LIM doma 44.5 10 0.00036 22.0 1.6 18 6-23 5-22 (77)
172 2ctu_A Zinc finger protein 483 44.5 6.1 0.00021 21.7 0.5 28 13-44 19-46 (73)
173 2enh_A Zinc finger protein 28 44.4 8.3 0.00028 19.6 1.0 10 12-21 12-21 (46)
174 2zxx_A Geminin; coiled-coil, c 44.3 45 0.0015 21.2 4.7 19 65-83 42-60 (79)
175 2ve7_A Kinetochore protein HEC 44.2 54 0.0019 25.0 6.0 18 66-83 187-204 (315)
176 1twf_L ABC10-alpha, DNA-direct 44.2 8.2 0.00028 23.9 1.1 27 13-47 29-55 (70)
177 3mq9_A Bone marrow stromal ant 43.9 58 0.002 25.1 6.2 24 66-89 445-468 (471)
178 1fxk_A Prefoldin; archaeal pro 43.8 56 0.0019 20.2 5.6 31 58-88 73-103 (107)
179 2dmd_A Zinc finger protein 64, 43.4 7.6 0.00026 22.6 0.9 33 12-44 8-43 (96)
180 2aze_B Transcription factor E2 42.8 62 0.0021 21.2 5.4 29 59-87 8-36 (106)
181 3mq9_A Bone marrow stromal ant 42.8 50 0.0017 25.5 5.7 32 61-92 433-464 (471)
182 2wg5_A General control protein 42.7 32 0.0011 22.4 4.0 25 60-84 10-34 (109)
183 2em0_A Zinc finger protein 224 42.2 3.9 0.00013 20.9 -0.6 31 13-43 13-46 (46)
184 3uux_B Mitochondrial division 42.2 50 0.0017 25.1 5.4 18 61-78 174-191 (242)
185 1n0z_A ZNF265; zinc finger, RN 42.0 17 0.00057 20.5 2.1 20 1-20 3-24 (45)
186 3w03_C DNA repair protein XRCC 42.0 36 0.0012 24.7 4.4 31 65-95 153-183 (184)
187 2wvr_A Geminin; DNA replicatio 41.6 64 0.0022 24.0 5.8 24 65-88 116-139 (209)
188 3swk_A Vimentin; cytoskeleton, 41.4 41 0.0014 21.2 4.2 23 66-88 58-80 (86)
189 2ent_A Krueppel-like factor 15 41.3 11 0.00037 19.1 1.2 33 11-43 11-48 (48)
190 2d74_B Translation initiation 41.3 14 0.00046 26.0 2.0 34 13-50 105-138 (148)
191 3m91_A Proteasome-associated A 41.3 52 0.0018 19.1 5.4 22 68-89 27-48 (51)
192 4e61_A Protein BIM1; EB1-like 41.1 48 0.0016 22.2 4.6 22 65-86 19-40 (106)
193 2dq0_A Seryl-tRNA synthetase; 41.1 34 0.0012 27.5 4.6 31 60-90 72-102 (455)
194 3mtu_E Head morphogenesis prot 40.7 68 0.0023 20.3 5.2 29 63-91 43-71 (77)
195 1ic2_A Tropomyosin alpha chain 40.7 61 0.0021 19.8 6.4 27 68-94 38-64 (81)
196 4efa_E V-type proton ATPase su 40.6 7 0.00024 28.2 0.5 9 30-38 224-232 (233)
197 2oqq_A Transcription factor HY 39.8 52 0.0018 18.7 4.6 27 60-86 6-32 (42)
198 2d8y_A Eplin protein; LIM doma 39.8 20 0.00069 21.7 2.5 29 12-44 15-49 (91)
199 2gqj_A Zinc finger protein KIA 39.6 1.4 4.7E-05 26.9 -3.1 32 13-44 25-61 (98)
200 3mq7_A Bone marrow stromal ant 39.1 91 0.0031 21.3 6.0 29 60-88 74-102 (121)
201 2zdi_C Prefoldin subunit alpha 39.0 64 0.0022 21.6 5.2 35 57-91 105-139 (151)
202 1vzi_A Desulfoferrodoxin; ferr 38.8 13 0.00044 25.1 1.5 14 35-48 5-18 (126)
203 2x5c_A Hypothetical protein OR 38.6 89 0.003 21.0 6.3 58 13-80 53-114 (131)
204 2co8_A NEDD9 interacting prote 38.4 29 0.001 20.7 3.0 31 10-44 13-49 (82)
205 1wt6_A Myotonin-protein kinase 38.2 74 0.0025 20.4 5.0 25 65-89 46-70 (81)
206 1joc_A EEA1, early endosomal a 38.1 85 0.0029 20.7 6.2 17 72-88 19-35 (125)
207 3mly_P HIV-1 GP120 third varia 38.0 9.7 0.00033 18.1 0.6 8 32-39 10-17 (23)
208 2z5i_A TM, general control pro 37.9 58 0.002 18.8 5.5 30 61-90 16-45 (52)
209 3ol1_A Vimentin; structural ge 37.7 74 0.0025 20.9 5.2 15 73-87 85-99 (119)
210 1p9i_A Cortexillin I/GCN4 hybr 37.6 46 0.0016 17.5 3.6 16 62-77 11-26 (31)
211 3lay_A Zinc resistance-associa 37.6 79 0.0027 22.4 5.6 20 72-91 114-133 (175)
212 3qne_A Seryl-tRNA synthetase, 37.6 38 0.0013 27.8 4.4 28 62-89 76-103 (485)
213 2eoe_A Zinc finger protein 347 37.4 3.2 0.00011 21.2 -1.4 9 13-21 13-21 (46)
214 2e72_A POGO transposable eleme 37.3 22 0.00074 20.9 2.1 18 5-22 5-22 (49)
215 3u1c_A Tropomyosin alpha-1 cha 37.2 81 0.0028 20.2 6.4 26 68-93 41-66 (101)
216 3azd_A Short alpha-tropomyosin 37.2 12 0.00042 20.4 1.0 18 72-89 5-22 (37)
217 3uji_P Envelope glycoprotein G 37.1 10 0.00035 18.0 0.6 9 31-39 9-17 (23)
218 3viq_A SWI5-dependent recombin 36.9 61 0.0021 21.8 4.7 22 63-84 6-27 (122)
219 1yhn_B RILP, RAB interacting l 36.8 45 0.0015 20.5 3.6 24 65-88 4-27 (65)
220 3viq_B Mating-type switching p 36.8 46 0.0016 21.4 3.9 17 60-76 11-27 (85)
221 3w03_C DNA repair protein XRCC 36.6 1E+02 0.0035 22.3 6.1 34 55-88 150-183 (184)
222 1lko_A Rubrerythrin all-iron(I 36.6 9.3 0.00032 27.1 0.5 24 12-44 155-178 (191)
223 1p7a_A BF3, BKLF, kruppel-like 36.5 21 0.00072 16.8 1.8 12 33-44 7-18 (37)
224 3mlz_P HIV-1 GP120 third varia 36.4 10 0.00034 18.4 0.5 8 32-39 11-18 (25)
225 2csh_A Zinc finger protein 297 36.2 8.6 0.0003 23.1 0.3 7 13-20 11-17 (110)
226 1x64_A Alpha-actinin-2 associa 35.7 35 0.0012 20.5 3.1 31 11-44 24-58 (89)
227 2lcq_A Putative toxin VAPC6; P 35.6 12 0.00041 25.5 1.0 11 13-23 133-143 (165)
228 2elm_A Zinc finger protein 406 35.4 16 0.00054 17.6 1.2 12 33-44 5-16 (37)
229 1ci6_A Transcription factor AT 35.3 69 0.0024 18.8 5.5 22 66-87 25-46 (63)
230 2yt9_A Zinc finger-containing 35.0 6.3 0.00021 23.0 -0.5 32 13-44 8-42 (95)
231 2js5_A Uncharacterized protein 34.7 39 0.0013 21.1 3.2 22 66-87 5-26 (71)
232 4emc_A Monopolin complex subun 34.7 1.2E+02 0.004 22.3 6.2 13 71-83 41-53 (190)
233 3cw2_K Translation initiation 34.6 15 0.00052 25.4 1.4 31 13-47 104-134 (139)
234 1nee_A EIF-2-beta, probable tr 34.5 16 0.00053 25.3 1.4 31 13-47 103-133 (138)
235 3i00_A HIP-I, huntingtin-inter 34.5 59 0.002 21.9 4.3 17 74-90 43-59 (120)
236 1use_A VAsp, vasodilator-stimu 34.5 67 0.0023 18.4 4.3 9 81-89 33-41 (45)
237 2elv_A Zinc finger protein 406 34.3 25 0.00086 16.5 1.9 12 33-44 5-16 (36)
238 2xzm_9 RPS31E; ribosome, trans 34.3 18 0.00062 26.2 1.8 33 13-52 114-146 (189)
239 3tq7_B Microtubule-associated 34.2 19 0.00066 23.0 1.7 14 63-76 7-20 (82)
240 1y07_A Desulfoferrodoxin (RBO) 34.2 13 0.00045 25.1 1.0 18 32-49 2-20 (128)
241 2j5u_A MREC protein; bacterial 34.0 23 0.00079 26.2 2.4 21 63-83 25-45 (255)
242 3a7p_A Autophagy protein 16; c 33.6 84 0.0029 22.2 5.1 27 63-89 67-93 (152)
243 4e2x_A TCAB9; kijanose, tetron 33.3 37 0.0013 25.5 3.5 16 36-51 52-67 (416)
244 1zme_C Proline utilization tra 33.2 29 0.001 19.8 2.3 22 66-87 46-67 (70)
245 1rtm_1 Mannose-binding protein 33.0 52 0.0018 21.1 3.8 24 62-85 2-25 (149)
246 4ay9_A Glycoprotein hormones, 33.0 6 0.0002 26.1 -0.9 30 14-47 6-35 (92)
247 2els_A Zinc finger protein 406 32.7 21 0.00072 16.8 1.4 12 33-44 5-16 (36)
248 2kwq_A Protein MCM10 homolog; 32.5 20 0.00069 23.4 1.6 32 13-52 49-80 (92)
249 2elq_A Zinc finger protein 406 32.5 20 0.00067 16.9 1.3 12 33-44 5-16 (36)
250 1x6a_A LIMK-2, LIM domain kina 32.4 32 0.0011 20.1 2.4 29 13-44 16-48 (81)
251 2elt_A Zinc finger protein 406 32.2 20 0.00069 16.7 1.3 12 33-44 5-16 (36)
252 3vk8_A Probable formamidopyrim 32.1 36 0.0012 25.8 3.2 31 13-44 256-286 (295)
253 1zfo_A LAsp-1; LIM domain, zin 32.1 16 0.00054 18.7 0.9 10 13-22 4-13 (31)
254 1avy_A Fibritin, gpwac M; bact 31.9 93 0.0032 19.6 4.6 25 60-84 18-42 (74)
255 1nui_A DNA primase/helicase; z 31.7 24 0.00083 25.3 2.1 28 13-46 15-42 (255)
256 3j20_W 30S ribosomal protein S 31.1 26 0.00088 21.5 1.8 14 13-26 16-29 (63)
257 2elx_A Zinc finger protein 406 30.9 21 0.00071 16.5 1.2 11 34-44 4-14 (35)
258 1uix_A RHO-associated kinase; 30.8 98 0.0034 19.2 5.2 23 60-82 7-29 (71)
259 1kil_E Complexin I snare-compl 30.8 82 0.0028 18.4 5.8 22 77-98 26-49 (49)
260 3iz5_i 60S ribosomal protein L 30.7 21 0.00073 24.4 1.6 31 13-43 42-86 (119)
261 3u50_C Telomerase-associated p 30.7 20 0.00069 25.5 1.5 26 13-46 43-68 (172)
262 2wt7_A Proto-oncogene protein 30.6 84 0.0029 18.4 5.5 22 66-87 25-46 (63)
263 3rrk_A V-type ATPase 116 kDa s 30.6 1.2E+02 0.004 22.6 5.9 27 60-86 102-128 (357)
264 2dq3_A Seryl-tRNA synthetase; 30.5 32 0.0011 27.3 2.8 32 61-92 72-103 (425)
265 2ve7_C Kinetochore protein NUF 30.1 19 0.00064 26.8 1.3 18 70-87 161-178 (250)
266 1lwu_C Fibrinogen gamma chain; 30.0 1.2E+02 0.0039 23.6 5.9 23 65-87 27-49 (323)
267 3efg_A Protein SLYX homolog; x 29.9 1E+02 0.0034 19.1 5.3 22 66-87 30-51 (78)
268 3swf_A CGMP-gated cation chann 29.9 99 0.0034 19.4 4.5 31 66-96 9-39 (74)
269 1s1c_X RHO-associated, coiled- 29.6 1E+02 0.0035 19.1 5.2 16 62-77 11-26 (71)
270 1fzc_C Fibrin; blood coagulati 29.5 67 0.0023 24.9 4.4 27 60-86 14-40 (319)
271 2ve7_A Kinetochore protein HEC 29.3 75 0.0026 24.2 4.6 28 58-85 186-213 (315)
272 3vem_A Helicase protein MOM1; 29.2 73 0.0025 21.6 4.0 29 68-96 65-93 (115)
273 3swy_A Cyclic nucleotide-gated 29.1 84 0.0029 17.9 4.6 32 66-97 7-38 (46)
274 3f6n_A Virion-associated prote 29.0 1.2E+02 0.004 21.0 5.1 29 60-88 5-33 (129)
275 1nyp_A Pinch protein; LIM doma 28.9 23 0.00078 19.9 1.3 30 12-44 5-38 (66)
276 3a5c_G V-type ATP synthase sub 28.7 48 0.0016 24.1 3.3 39 47-92 121-159 (223)
277 1srk_A Zinc finger protein ZFP 28.7 24 0.00083 16.3 1.2 11 34-44 4-14 (35)
278 2ej4_A Zinc finger protein ZIC 28.7 40 0.0014 19.4 2.4 31 14-44 27-69 (95)
279 2gkw_A TNF receptor-associated 28.4 87 0.003 21.5 4.5 33 60-92 3-35 (192)
280 1wee_A PHD finger family prote 28.4 89 0.003 18.4 4.0 23 12-44 16-38 (72)
281 1qxf_A GR2, 30S ribosomal prot 28.4 20 0.00067 22.3 1.0 14 13-26 8-21 (66)
282 2elr_A Zinc finger protein 406 28.1 33 0.0011 15.9 1.7 12 33-44 5-16 (36)
283 3rvy_A ION transport protein; 28.0 12 0.00043 27.0 0.0 24 66-89 258-281 (285)
284 3k7a_M Transcription initiatio 28.0 33 0.0011 26.2 2.4 32 12-47 21-52 (345)
285 3u06_A Protein claret segregat 27.9 1.5E+02 0.005 23.5 6.2 27 65-91 18-44 (412)
286 2aze_A Transcription factor DP 27.8 1.6E+02 0.0055 20.8 5.8 14 56-69 4-17 (155)
287 1iml_A CRIP, cysteine rich int 27.7 27 0.00092 20.3 1.5 28 13-44 1-34 (76)
288 2elp_A Zinc finger protein 406 27.7 25 0.00085 16.6 1.2 11 34-44 6-16 (37)
289 1yf2_A Type I restriction-modi 27.6 1.6E+02 0.0055 21.3 6.0 28 65-93 177-204 (425)
290 3aon_A V-type sodium ATPase su 27.6 42 0.0014 24.3 2.8 29 65-93 145-173 (217)
291 2m0e_A Zinc finger and BTB dom 27.4 21 0.00071 15.4 0.8 8 37-44 2-9 (29)
292 2w6b_A RHO guanine nucleotide 27.2 1E+02 0.0036 18.4 5.9 22 73-94 19-40 (56)
293 1am9_A Srebp-1A, protein (ster 27.2 1.1E+02 0.0038 18.7 4.5 35 56-90 39-76 (82)
294 1uii_A Geminin; human, DNA rep 26.9 1.3E+02 0.0044 19.3 5.7 24 60-83 49-72 (83)
295 3s4r_A Vimentin; alpha-helix, 26.7 1.3E+02 0.0043 19.1 5.7 9 79-87 78-86 (93)
296 1lwu_C Fibrinogen gamma chain; 26.6 1.2E+02 0.0042 23.5 5.5 30 58-87 6-35 (323)
297 2wt7_B Transcription factor MA 26.5 1.3E+02 0.0045 19.3 5.0 27 65-91 49-75 (90)
298 3q8t_A Beclin-1; autophagy, AT 26.4 1.3E+02 0.0044 19.1 5.1 9 88-96 54-62 (96)
299 1lwu_B Fibrinogen beta chain; 26.3 73 0.0025 24.7 4.1 25 65-89 29-53 (323)
300 1x61_A Thyroid receptor intera 26.2 42 0.0014 19.0 2.2 29 12-44 5-40 (72)
301 2gd5_A Charged multivesicular 26.1 1.6E+02 0.0055 20.2 5.6 30 62-91 19-48 (179)
302 2jr7_A DPH3 homolog; DESR1, CS 25.9 14 0.00049 23.9 0.0 34 13-49 24-57 (89)
303 3u59_A Tropomyosin beta chain; 25.8 1.3E+02 0.0044 19.0 6.4 26 68-93 41-66 (101)
304 1gd2_E Transcription factor PA 25.7 1.2E+02 0.0041 18.5 5.3 27 63-89 35-61 (70)
305 3viq_A SWI5-dependent recombin 25.7 1.5E+02 0.0051 19.8 5.2 17 74-90 10-26 (122)
306 2l4z_A DNA endonuclease RBBP8, 25.6 34 0.0012 22.3 1.9 31 12-44 61-95 (123)
307 3kv5_D JMJC domain-containing 25.6 40 0.0014 27.5 2.6 32 5-48 30-61 (488)
308 1vq8_1 50S ribosomal protein L 25.5 11 0.00038 22.8 -0.5 23 13-45 18-40 (57)
309 2xdj_A Uncharacterized protein 25.4 1.3E+02 0.0044 18.9 6.2 23 66-88 29-51 (83)
310 4b4t_M 26S protease regulatory 25.3 79 0.0027 25.2 4.3 30 61-90 36-65 (434)
311 3i00_A HIP-I, huntingtin-inter 25.3 1.6E+02 0.0053 19.7 5.5 25 66-90 17-41 (120)
312 3vlc_E Golgi to ER traffic pro 25.2 1.1E+02 0.0039 19.9 4.3 45 47-91 17-76 (94)
313 2xzm_6 RPS27E; ribosome, trans 25.1 37 0.0013 21.8 1.9 14 13-26 33-46 (81)
314 3arc_I Photosystem II reaction 25.1 14 0.00047 20.7 -0.2 10 27-36 25-35 (38)
315 1t3j_A Mitofusin 1; coiled coi 24.9 1.5E+02 0.0051 19.3 5.2 16 68-83 51-66 (96)
316 1x3z_A Peptide: N-glycanase; h 24.8 46 0.0016 26.3 2.7 35 12-46 119-164 (335)
317 2dkt_A Ring finger and CHY zin 24.8 45 0.0015 23.3 2.4 9 38-46 84-92 (143)
318 1x4l_A Skeletal muscle LIM-pro 24.8 44 0.0015 19.0 2.1 29 12-44 5-42 (72)
319 3bci_A Disulfide bond protein 24.6 13 0.00044 24.8 -0.4 21 1-21 1-29 (186)
320 3rrk_A V-type ATPase 116 kDa s 24.6 1.4E+02 0.0047 22.2 5.3 33 60-92 95-127 (357)
321 2g2k_A EIF-5, eukaryotic trans 24.5 42 0.0014 24.1 2.2 38 13-52 97-134 (170)
322 3u5c_b RP61, YS20, 40S ribosom 24.5 38 0.0013 21.8 1.8 14 13-26 35-48 (82)
323 2elo_A Zinc finger protein 406 24.4 24 0.00083 16.6 0.7 11 34-44 6-16 (37)
324 3sjb_C Golgi to ER traffic pro 24.4 85 0.0029 20.5 3.6 17 74-90 52-68 (93)
325 3sjq_C Small conductance calci 24.3 1.2E+02 0.004 19.6 4.2 26 66-92 55-80 (87)
326 3aon_A V-type sodium ATPase su 24.2 1.3E+02 0.0046 21.5 5.0 26 58-83 39-64 (217)
327 2en2_A B-cell lymphoma 6 prote 24.1 51 0.0017 15.9 2.0 13 32-44 6-18 (42)
328 4b4t_K 26S protease regulatory 24.1 1.9E+02 0.0065 22.9 6.3 29 61-89 53-81 (428)
329 2wvr_A Geminin; DNA replicatio 24.0 1.8E+02 0.0063 21.5 5.7 26 59-84 117-142 (209)
330 1qp6_A Protein (alpha2D); de n 23.8 42 0.0014 18.0 1.6 14 71-84 20-33 (35)
331 1v5n_A PDI-like hypothetical p 23.8 42 0.0014 21.0 1.9 23 13-46 48-70 (89)
332 4ani_A Protein GRPE; chaperone 23.7 2.2E+02 0.0074 20.8 6.1 28 61-88 63-90 (213)
333 2lf0_A Uncharacterized protein 23.7 87 0.003 21.5 3.6 20 58-77 37-56 (123)
334 3j21_e 50S ribosomal protein L 23.6 23 0.00079 21.7 0.6 24 12-45 17-40 (62)
335 3rk3_E Complexin-1; snare prot 23.6 1.3E+02 0.0045 18.3 6.4 23 76-98 28-52 (63)
336 1c94_A Retro-GCN4 leucine zipp 23.5 39 0.0013 18.5 1.5 24 60-83 12-35 (38)
337 3j21_g 50S ribosomal protein L 23.5 26 0.00088 20.5 0.8 9 13-21 15-23 (51)
338 3csx_A Putative uncharacterize 23.5 46 0.0016 21.3 2.1 22 65-86 16-37 (81)
339 1whl_A Cylindromatosis tumor s 23.4 24 0.00083 22.7 0.7 16 34-49 66-82 (95)
340 1gh9_A 8.3 kDa protein (gene M 23.4 33 0.0011 21.1 1.4 31 13-52 5-35 (71)
341 2pk7_A Uncharacterized protein 23.4 71 0.0024 19.4 2.9 32 13-51 9-40 (69)
342 1l1o_C Replication protein A 7 23.3 27 0.00093 24.3 1.1 24 13-44 44-69 (181)
343 4a9a_A Ribosome-interacting GT 23.3 67 0.0023 25.0 3.4 37 56-92 12-54 (376)
344 1zhc_A Hypothetical protein HP 23.1 97 0.0033 18.9 3.5 10 85-94 47-56 (76)
345 2dfs_A Myosin-5A; myosin-V, in 23.0 1.2E+02 0.0041 27.0 5.3 19 68-86 988-1006(1080)
346 3m9b_A Proteasome-associated A 22.9 1.3E+02 0.0043 22.9 4.8 29 61-89 58-86 (251)
347 1wge_A Hypothetical protein 26 22.9 26 0.00088 22.3 0.8 34 13-49 31-64 (83)
348 2xv5_A Lamin-A/C; structural p 22.9 1.4E+02 0.0048 18.3 5.0 15 62-76 17-31 (74)
349 1hlo_A Protein (transcription 22.8 1.3E+02 0.0045 18.0 4.2 29 56-84 46-77 (80)
350 1got_B GT-beta; complex (GTP-b 22.8 60 0.0021 22.9 2.9 25 64-88 2-26 (340)
351 1cxz_B Protein (PKN); protein- 22.7 1.2E+02 0.004 19.4 4.0 21 69-89 61-81 (86)
352 2zvf_A Alanyl-tRNA synthetase; 22.7 1.7E+02 0.0059 19.3 5.6 24 66-89 34-57 (171)
353 2kvh_A Zinc finger and BTB dom 22.7 31 0.0011 14.9 0.9 8 37-44 3-10 (27)
354 2m0f_A Zinc finger and BTB dom 22.6 33 0.0011 14.7 1.0 8 37-44 2-9 (29)
355 3okq_A BUD site selection prot 22.5 1.7E+02 0.0059 20.3 5.1 30 62-91 19-48 (141)
356 1rik_A E6APC1 peptide; E6-bind 22.5 32 0.0011 14.9 0.9 8 37-44 2-9 (29)
357 2emb_A Zinc finger protein 473 22.4 57 0.0019 15.9 2.0 12 33-44 8-19 (44)
358 2gr7_A Adhesin; trimeric autot 22.4 1.5E+02 0.0051 19.9 4.7 25 65-89 33-57 (129)
359 2ept_A Zinc finger protein 32; 22.1 55 0.0019 15.7 1.9 12 33-44 6-17 (41)
360 2m0d_A Zinc finger and BTB dom 22.0 36 0.0012 14.6 1.0 9 36-44 2-10 (30)
361 3lss_A Seryl-tRNA synthetase; 22.0 1.1E+02 0.0037 25.1 4.5 29 63-91 109-138 (484)
362 2vkl_A RV0948C/MT0975; helical 21.9 1.5E+02 0.0052 18.4 5.2 31 58-88 13-43 (90)
363 1yf2_A Type I restriction-modi 21.9 2.1E+02 0.0073 20.6 5.8 26 66-92 388-413 (425)
364 1paa_A Yeast transcription fac 21.8 31 0.0011 15.1 0.8 8 37-44 2-9 (30)
365 1fv5_A First zinc finger of U- 21.7 28 0.00097 18.0 0.7 11 34-44 5-15 (36)
366 1ard_A Yeast transcription fac 21.6 33 0.0011 14.8 0.8 8 37-44 2-9 (29)
367 3twl_A Formamidopyrimidine-DNA 21.6 35 0.0012 26.1 1.4 28 13-45 248-277 (310)
368 1go4_E MAD1 (mitotic arrest de 21.3 1.8E+02 0.0062 19.0 5.3 31 65-95 13-43 (100)
369 2eom_A ZFP-95, zinc finger pro 21.1 53 0.0018 16.4 1.7 13 32-44 7-19 (46)
370 2e9h_A EIF-5, eukaryotic trans 21.0 90 0.0031 21.9 3.4 37 13-51 104-140 (157)
371 2js4_A UPF0434 protein BB2007; 20.6 69 0.0024 19.5 2.4 30 13-49 9-38 (70)
372 2czr_A TBP-interacting protein 20.6 32 0.0011 25.7 1.0 13 35-47 152-164 (226)
373 2epc_A Zinc finger protein 32; 20.6 41 0.0014 16.2 1.2 12 33-44 7-18 (42)
374 3err_A Fusion protein of micro 20.5 1.5E+02 0.0052 24.3 5.1 32 60-91 176-207 (536)
375 2kvg_A Zinc finger and BTB dom 20.5 29 0.001 15.2 0.5 8 37-44 3-10 (27)
376 2vpb_A Hpygo1, pygopus homolog 20.4 82 0.0028 18.6 2.7 24 12-44 8-32 (65)
377 2el5_A Zinc finger protein 268 20.4 40 0.0014 16.3 1.1 12 33-44 6-17 (42)
378 2epv_A Zinc finger protein 268 20.3 45 0.0015 16.5 1.3 12 33-44 8-19 (44)
379 2eoh_A Zinc finger protein 28 20.2 55 0.0019 16.2 1.7 12 33-44 8-19 (46)
380 2jrp_A Putative cytoplasmic pr 20.2 40 0.0014 21.4 1.3 15 13-27 32-46 (81)
381 2em4_A Zinc finger protein 28 20.2 66 0.0023 15.9 2.0 12 33-44 8-19 (46)
382 2e62_A Protein AT5G25060; CWF2 20.1 1.1E+02 0.0038 18.5 3.3 11 89-99 51-61 (61)
383 3na7_A HP0958; flagellar bioge 20.1 2.5E+02 0.0086 20.2 6.3 8 76-83 58-65 (256)
384 1r48_A Proline/betaine transpo 20.0 1.1E+02 0.0038 16.1 4.1 20 62-81 6-25 (33)
385 1kd8_B GABH BLL, GCN4 acid bas 20.0 1.2E+02 0.0042 16.6 4.1 13 71-83 8-20 (36)
No 1
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=96.52 E-value=0.0021 Score=38.29 Aligned_cols=38 Identities=24% Similarity=0.726 Sum_probs=28.1
Q ss_pred cccccCcccc-ceeeeec--CCCCCCcceeeCCCCCeeEecc
Q 041503 12 LQVCNECGGQ-IELFTSH--TTKNPNRKFWKCRVCKNFQWAE 50 (99)
Q Consensus 12 ~~~Cp~Cg~~-~~~~tS~--t~~NPgR~Fy~C~~C~fF~W~D 50 (99)
.+.||.||.. +.-+... +.++|--.||.|..|++ .|.+
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~-~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGH-TWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCC-EEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCC-Eecc
Confidence 4789999974 4444444 45789999999999986 4654
No 2
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=94.67 E-value=0.024 Score=33.41 Aligned_cols=36 Identities=22% Similarity=0.531 Sum_probs=27.3
Q ss_pred CCcccccCccc-cceeeee--cCCCCCCcceeeCCCCCe
Q 041503 10 NSLQVCNECGG-QIELFTS--HTTKNPNRKFWKCRVCKN 45 (99)
Q Consensus 10 ~~~~~Cp~Cg~-~~~~~tS--~t~~NPgR~Fy~C~~C~f 45 (99)
.....||.||. .+.-+.+ ++.+.|--.||.|..|++
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~ 45 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGN 45 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCC
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCC
Confidence 34578999996 4555554 445789999999999985
No 3
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=92.48 E-value=0.1 Score=34.98 Aligned_cols=36 Identities=14% Similarity=0.443 Sum_probs=27.8
Q ss_pred ccccCccc-cceeeeec--CCCCCCcceeeCCCCCeeEec
Q 041503 13 QVCNECGG-QIELFTSH--TTKNPNRKFWKCRVCKNFQWA 49 (99)
Q Consensus 13 ~~Cp~Cg~-~~~~~tS~--t~~NPgR~Fy~C~~C~fF~W~ 49 (99)
..||.||. .|.-+.+. +.+.|--.||+|..|++ .|.
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~-~w~ 111 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGF-AFE 111 (113)
T ss_dssp SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCC-CCC
T ss_pred cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCC-EEe
Confidence 78999997 45555544 56899999999999985 354
No 4
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=92.34 E-value=0.17 Score=34.29 Aligned_cols=38 Identities=21% Similarity=0.552 Sum_probs=29.6
Q ss_pred ccccCccc-cceeeee--cCCCCCCcceeeCCCCCeeEeccC
Q 041503 13 QVCNECGG-QIELFTS--HTTKNPNRKFWKCRVCKNFQWAED 51 (99)
Q Consensus 13 ~~Cp~Cg~-~~~~~tS--~t~~NPgR~Fy~C~~C~fF~W~De 51 (99)
..||.||. .+.-+.+ ++.+.|--.||.|..|++ .|.+.
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~-~w~~n 113 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSH-IFTSD 113 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCC-EEECC
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCC-EeccC
Confidence 78999997 4555554 456889999999999987 57655
No 5
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.28 E-value=0.11 Score=30.60 Aligned_cols=30 Identities=23% Similarity=0.764 Sum_probs=22.2
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEec
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWA 49 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~ 49 (99)
..||.||..+.+... ..-+.|+.|+|-.|.
T Consensus 20 k~CP~CG~~~fm~~~-------~~R~~C~kCG~t~~~ 49 (50)
T 3j20_Y 20 KFCPRCGPGVFMADH-------GDRWACGKCGYTEWK 49 (50)
T ss_dssp EECSSSCSSCEEEEC-------SSEEECSSSCCEEEC
T ss_pred ccCCCCCCceEEecC-------CCeEECCCCCCEEEC
Confidence 789999987654421 234789999998885
No 6
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=92.12 E-value=0.08 Score=38.23 Aligned_cols=34 Identities=24% Similarity=0.648 Sum_probs=26.1
Q ss_pred cccccCccc-cceeeeecC--CCCCCcceeeCCCCCe
Q 041503 12 LQVCNECGG-QIELFTSHT--TKNPNRKFWKCRVCKN 45 (99)
Q Consensus 12 ~~~Cp~Cg~-~~~~~tS~t--~~NPgR~Fy~C~~C~f 45 (99)
...||.||. .+.-+.+.+ .+.|--.||.|..|++
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~ 173 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGN 173 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCC
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCC
Confidence 478999997 455555444 4789999999999985
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=92.04 E-value=0.33 Score=28.87 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 57 EKIDLLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 57 ~k~~~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
.+.+.|..|+.++..+++.|++++.+++..|+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666777777777777777777666654
No 8
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=90.63 E-value=0.052 Score=45.79 Aligned_cols=34 Identities=9% Similarity=0.029 Sum_probs=18.2
Q ss_pred cccCcc-ccceeeeecCCCCCCcceeeCC---CCCeeEeccC
Q 041503 14 VCNECG-GQIELFTSHTTKNPNRKFWKCR---VCKNFQWAED 51 (99)
Q Consensus 14 ~Cp~Cg-~~~~~~tS~t~~NPgR~Fy~C~---~C~fF~W~De 51 (99)
.||.|| ..++.+.++ -|+.||.|. .|+|..|...
T Consensus 574 ~CP~Cg~g~l~~r~~k----~G~~f~gCs~yp~C~f~~~~~p 611 (633)
T 2gai_A 574 FYLKCECGKTRSVKND----EIAVIDDGKIFLGRKDSESGSP 611 (633)
T ss_dssp EEEECSSSCCEECCTT----SBCEEETTEEEC----------
T ss_pred cCcccCCCcceeeccc----CCCeEEeCCCCcCCCCeecCCc
Confidence 599999 777776543 367899996 7999999764
No 9
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=90.09 E-value=0.15 Score=32.16 Aligned_cols=37 Identities=27% Similarity=0.634 Sum_probs=28.7
Q ss_pred CCcccccCccccceeeeecCCCCCCcceeeCC-CCC---eeEeccCC
Q 041503 10 NSLQVCNECGGQIELFTSHTTKNPNRKFWKCR-VCK---NFQWAEDR 52 (99)
Q Consensus 10 ~~~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~-~C~---fF~W~De~ 52 (99)
...+.||-||+++. +..+||.|+| |. .|+ +-.|.++.
T Consensus 7 ~~~~~CP~Cgkp~~----W~~~~~~rPF--CSeRCr~iDLg~Wa~e~ 47 (68)
T 1lv3_A 7 TITVNCPTCGKTVV----WGEISPFRPF--CSKRCQLIDLGEWAAEE 47 (68)
T ss_dssp CCEEECTTTCCEEE----CSSSSSCCSS--SSHHHHHHHHSCSSSSS
T ss_pred CCcCcCCCCCCccc----ccccCCCCcc--cCHHHHhhhHHHHhcCC
Confidence 34589999999865 5667999998 55 554 88999886
No 10
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=89.48 E-value=0.22 Score=38.46 Aligned_cols=34 Identities=21% Similarity=0.653 Sum_probs=26.6
Q ss_pred cccccCccc-cceeeee--cCCCCCCcceeeCCCCCe
Q 041503 12 LQVCNECGG-QIELFTS--HTTKNPNRKFWKCRVCKN 45 (99)
Q Consensus 12 ~~~Cp~Cg~-~~~~~tS--~t~~NPgR~Fy~C~~C~f 45 (99)
...||.||. .+..+.. ++.+.|-..||.|..|++
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~ 304 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGN 304 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCC
Confidence 478999996 4555554 456889999999999985
No 11
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=87.23 E-value=0.24 Score=32.48 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=22.0
Q ss_pred ccccCccccceeeeecC--C--CC-----CCcceeeCCCCCeeEeccC
Q 041503 13 QVCNECGGQIELFTSHT--T--KN-----PNRKFWKCRVCKNFQWAED 51 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t--~--~N-----PgR~Fy~C~~C~fF~W~De 51 (99)
.+||.||.........+ - ++ ++=+.|.|+.|+=-.+.++
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d~e 50 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKE 50 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECCHH
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeecHH
Confidence 58999997532222111 1 11 1226788999986655544
No 12
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=86.31 E-value=0.68 Score=31.83 Aligned_cols=34 Identities=21% Similarity=0.665 Sum_probs=23.8
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEec
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWA 49 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~ 49 (99)
..||.||....... ++...+..+.|+.|++..|.
T Consensus 4 ~~C~~CG~~~~~~~---~~G~~~~~~~~~~~~~~~~~ 37 (189)
T 3cng_A 4 KFCSQCGGEVILRI---PEGDTLPRYICPKCHTIHYQ 37 (189)
T ss_dssp CBCTTTCCBCEEEC---CTTCSSCEEEETTTTEEECC
T ss_pred ccCchhCCcccccc---ccCCCCcceECCCCCCccCC
Confidence 57999999887654 33345566779999865553
No 13
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=86.00 E-value=0.15 Score=35.46 Aligned_cols=36 Identities=25% Similarity=0.780 Sum_probs=0.0
Q ss_pred ccccCccc-cceeeeec--CCCCCCcceeeCCCCCeeEec
Q 041503 13 QVCNECGG-QIELFTSH--TTKNPNRKFWKCRVCKNFQWA 49 (99)
Q Consensus 13 ~~Cp~Cg~-~~~~~tS~--t~~NPgR~Fy~C~~C~fF~W~ 49 (99)
..||.||. .|.-+... +.+.|--.||+|..|++ .|.
T Consensus 93 ~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~-~w~ 131 (133)
T 3qt1_I 93 RECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGH-RWK 131 (133)
T ss_dssp ----------------------------------------
T ss_pred CCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCC-EeC
Confidence 78999996 56555544 46889999999999985 354
No 14
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=85.83 E-value=1.9 Score=27.31 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041503 66 VRKLTLEIERLSDKFRLLHKELEHTQLRSKY 96 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El~~~~~~~~~ 96 (99)
+..+..++++-++.|+.|++||++++.+.+|
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIY 58 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVNQERFRMIY 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5566667888888899999999999999887
No 15
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=85.27 E-value=0.25 Score=26.29 Aligned_cols=42 Identities=14% Similarity=0.289 Sum_probs=22.6
Q ss_pred CCCCCCCCCcccccCccccce---eeeecCCCCCCcceeeCCCCC
Q 041503 3 SSTNESRNSLQVCNECGGQIE---LFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 3 SSs~~~~~~~~~Cp~Cg~~~~---~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
|++-........|+.||+... .+........+.+.|.|+.|+
T Consensus 3 ~~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~ 47 (48)
T 2epr_A 3 SGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47 (48)
T ss_dssp CCSCCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred CCCCCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence 333333444588999996422 112222233455678998774
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.77 E-value=2.7 Score=24.76 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 64 EEVRKLTLEIERLSDKFRLLHKELEHTQLRS 94 (99)
Q Consensus 64 ~ei~e~~~ei~~l~~k~~~l~~El~~~~~~~ 94 (99)
.+++.+..|..+|++++..|..++++..-++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999988876554
No 17
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=84.75 E-value=0.52 Score=30.37 Aligned_cols=26 Identities=23% Similarity=0.718 Sum_probs=21.3
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCe
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKN 45 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~f 45 (99)
..||.||...+.+.+.. =|.|+.|++
T Consensus 28 y~Cp~CG~~~v~r~atG-------iW~C~~Cg~ 53 (83)
T 1vq8_Z 28 HACPNCGEDRVDRQGTG-------IWQCSYCDY 53 (83)
T ss_dssp EECSSSCCEEEEEEETT-------EEEETTTCC
T ss_pred CcCCCCCCcceeccCCC-------eEECCCCCC
Confidence 68999999877776643 799999986
No 18
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=83.58 E-value=6 Score=26.59 Aligned_cols=27 Identities=30% Similarity=0.680 Sum_probs=22.1
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCee
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNF 46 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF 46 (99)
-.||.||...+.+++.. -|.|..|++-
T Consensus 37 y~CpfCgk~~vKR~a~G-------IW~C~kCg~~ 63 (103)
T 4a17_Y 37 YGCPFCGKVAVKRAAVG-------IWKCKPCKKI 63 (103)
T ss_dssp EECTTTCCEEEEEEETT-------EEEETTTTEE
T ss_pred CCCCCCCCceeeecCcc-------eEEcCCCCCE
Confidence 67999999988887743 6889999864
No 19
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=82.65 E-value=1.3 Score=29.61 Aligned_cols=43 Identities=35% Similarity=0.474 Sum_probs=34.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041503 55 SNEKIDLLVEEVRKLTLEIERLSDKFRLLHKELEHTQLRSKYG 97 (99)
Q Consensus 55 ~~~k~~~l~~ei~e~~~ei~~l~~k~~~l~~El~~~~~~~~~~ 97 (99)
+-.....|..+|++|..|-.+|+..+..|..+|++.-++..|.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~ 52 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYD 52 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 4455567778899999999999999999999998866666553
No 20
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=80.25 E-value=7.8 Score=25.45 Aligned_cols=32 Identities=22% Similarity=0.460 Sum_probs=24.2
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEeccCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAEDR 52 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~De~ 52 (99)
-.||.||...+.+++.. -|.|..|++ .+...+
T Consensus 37 y~CpfCgk~~vkR~a~G-------IW~C~~Cg~-~~AGGA 68 (92)
T 3iz5_m 37 YFCEFCGKFAVKRKAVG-------IWGCKDCGK-VKAGGA 68 (92)
T ss_dssp BCCTTTCSSCBEEEETT-------EEECSSSCC-EEECCS
T ss_pred ccCcccCCCeeEecCcc-------eEEcCCCCC-EEeCCc
Confidence 67999999988887743 688999986 444443
No 21
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=79.65 E-value=8.7 Score=25.24 Aligned_cols=32 Identities=25% Similarity=0.556 Sum_probs=24.2
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEeccCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAEDR 52 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~De~ 52 (99)
-.||.||...+.+++.. -|.|..|++ .+...+
T Consensus 37 y~CpfCgk~~vkR~a~G-------IW~C~~C~~-~~AGGA 68 (92)
T 3izc_m 37 YDCSFCGKKTVKRGAAG-------IWTCSCCKK-TVAGGA 68 (92)
T ss_dssp CCCSSSCSSCCEEEETT-------EEECTTTCC-EEECCS
T ss_pred CcCCCCCCceeeecccc-------eEEcCCCCC-EEeCCc
Confidence 67999999988887743 688999986 444443
No 22
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=79.59 E-value=0.94 Score=35.19 Aligned_cols=30 Identities=17% Similarity=0.383 Sum_probs=19.4
Q ss_pred cccccCccccceeeeec-CCCCCCcceeeCC
Q 041503 12 LQVCNECGGQIELFTSH-TTKNPNRKFWKCR 41 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~-t~~NPgR~Fy~C~ 41 (99)
...||-||...++-+.+ +..--|.||..|.
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs 212 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCS 212 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEET
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeC
Confidence 48999999865554433 3455688899887
No 23
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=79.44 E-value=0.89 Score=28.80 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=21.1
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCe
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKN 45 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~f 45 (99)
-.||.||...+.+++.. -|.|..|++
T Consensus 28 y~C~fCgk~~vkR~a~G-------IW~C~~C~~ 53 (73)
T 1ffk_W 28 YKCPVCGFPKLKRASTS-------IWVCGHCGY 53 (73)
T ss_pred ccCCCCCCceeEEEEeE-------EEECCCCCc
Confidence 68999999888887753 488999985
No 24
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.50 E-value=1.7 Score=26.08 Aligned_cols=35 Identities=23% Similarity=0.509 Sum_probs=20.9
Q ss_pred CCCCCcccccCccccceeeeecCCCCCCcce----eeCCCCC
Q 041503 7 ESRNSLQVCNECGGQIELFTSHTTKNPNRKF----WKCRVCK 44 (99)
Q Consensus 7 ~~~~~~~~Cp~Cg~~~~~~tS~t~~NPgR~F----y~C~~C~ 44 (99)
.+.....+|+.|++++.-.... =.|+.| |+|..|+
T Consensus 10 ~~~~~~~~C~~C~~~I~~~~~~---a~~~~~H~~CF~C~~C~ 48 (79)
T 1x62_A 10 GNAQKLPMCDKCGTGIVGVFVK---LRDRHRHPECYVCTDCG 48 (79)
T ss_dssp CCCCCCCCCSSSCCCCCSSCEE---CSSCEECTTTTSCSSSC
T ss_pred CCCCCCCccccCCCCccCcEEE---ECcceeCcCcCeeCCCC
Confidence 3344458999999876543221 124555 6777674
No 25
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=78.45 E-value=1.2 Score=33.44 Aligned_cols=27 Identities=37% Similarity=0.811 Sum_probs=21.9
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
..||.||.++...+-. ||.-|=||.|+
T Consensus 235 ~pC~~CG~~I~~~~~~-----gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLS-----SRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEET-----TEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEEC-----CCCeEECCCCC
Confidence 4699999887655544 89999999996
No 26
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=78.40 E-value=5.4 Score=22.88 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 57 EKIDLLVEEVRKLTLEIERLSDKFRLL 83 (99)
Q Consensus 57 ~k~~~l~~ei~e~~~ei~~l~~k~~~l 83 (99)
++++-+..||.....+|..|+.+.+.|
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666666666666444333
No 27
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=78.40 E-value=5.9 Score=21.25 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 59 IDLLVEEVRKLTLEIERLSDKFRLL 83 (99)
Q Consensus 59 ~~~l~~ei~e~~~ei~~l~~k~~~l 83 (99)
+++|..||-.++.||..|+-.+-+|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444444
No 28
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=78.33 E-value=1.2 Score=33.72 Aligned_cols=27 Identities=30% Similarity=0.623 Sum_probs=21.7
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
..||.||.++...+-. ||.-|=||.|+
T Consensus 246 ~pC~~CG~~I~~~~~~-----gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVA-----GRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEET-----TEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEEC-----CCCeEECCCCC
Confidence 5799999877655543 79999999996
No 29
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=78.14 E-value=1.2 Score=33.58 Aligned_cols=27 Identities=30% Similarity=0.749 Sum_probs=21.8
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
..||.||.++...+-. ||.-|=||.|+
T Consensus 243 ~pC~~CG~~I~~~~~~-----gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVA-----GRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEET-----TEEEEECTTTS
T ss_pred CCCCCCCCEeeEEEEC-----CCceEECCCCC
Confidence 5599999887655543 89999999996
No 30
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=78.11 E-value=0.84 Score=23.67 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=17.1
Q ss_pred CCcccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 10 NSLQVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 10 ~~~~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
.....|+.||+.... +........+-+.|+|+.|
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ep0_A 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred CCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence 334778888864221 1111223344556777654
No 31
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=78.05 E-value=1.2 Score=33.50 Aligned_cols=27 Identities=30% Similarity=0.696 Sum_probs=21.8
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
..||.||.++...+-. ||.-|=||.|+
T Consensus 241 ~pC~~CG~~I~~~~~~-----gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHA-----QRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEET-----TEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEEC-----CCceEECCCCC
Confidence 4599999887665553 89999999996
No 32
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.02 E-value=7.1 Score=22.98 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 59 IDLLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 59 ~~~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
+..|+.++..+..+...|..++..|+.|+.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777776664
No 33
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=77.95 E-value=3.8 Score=22.89 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041503 63 VEEVRKLTLEIERLSDKFRLL 83 (99)
Q Consensus 63 ~~ei~e~~~ei~~l~~k~~~l 83 (99)
-.+|.+.+++|.+|+..+..|
T Consensus 13 hk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 13 HKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 337888999999998887776
No 34
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=77.92 E-value=0.61 Score=25.47 Aligned_cols=35 Identities=20% Similarity=0.489 Sum_probs=20.3
Q ss_pred CCcccccCcccccee---eeecCC-CCCCcceeeCCCCC
Q 041503 10 NSLQVCNECGGQIEL---FTSHTT-KNPNRKFWKCRVCK 44 (99)
Q Consensus 10 ~~~~~Cp~Cg~~~~~---~tS~t~-~NPgR~Fy~C~~C~ 44 (99)
.....|+.||+.... +..... ...+.+.|+|+.|+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~ 48 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWV 48 (54)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCC
Confidence 344889999974221 111111 34456779999776
No 35
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=77.74 E-value=1.1 Score=24.31 Aligned_cols=14 Identities=21% Similarity=0.639 Sum_probs=11.1
Q ss_pred cceeeCCCCCeeEe
Q 041503 35 RKFWKCRVCKNFQW 48 (99)
Q Consensus 35 R~Fy~C~~C~fF~W 48 (99)
-.||+|+.|+...=
T Consensus 4 ~~fY~C~~CGnive 17 (36)
T 1dxg_A 4 GDVYKCELCGQVVK 17 (36)
T ss_dssp TCEEECTTTCCEEE
T ss_pred ccEEEcCCCCcEEE
Confidence 47999999986554
No 36
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=77.71 E-value=0.27 Score=27.98 Aligned_cols=41 Identities=15% Similarity=0.380 Sum_probs=24.4
Q ss_pred cccccCccccceeeeecCCCCCCcceeeCCCCC-eeEeccCC
Q 041503 12 LQVCNECGGQIELFTSHTTKNPNRKFWKCRVCK-NFQWAEDR 52 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~-fF~W~De~ 52 (99)
...|+.||........-.....|.+.|+|+.|+ -|...+..
T Consensus 14 ~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~~ 55 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESA 55 (62)
T ss_dssp EEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECTTC
T ss_pred CccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCccc
Confidence 378999997422111111234566789999997 46665544
No 37
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=77.49 E-value=7.3 Score=23.19 Aligned_cols=30 Identities=33% Similarity=0.272 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 59 IDLLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 59 ~~~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
+..|+.++..+..+-..|+.++..|+.|+.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777766666654
No 38
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=77.39 E-value=1.3 Score=33.31 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=21.5
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
..||.||.++...+-. ||.-|=||.|+
T Consensus 236 ~pC~~CG~~I~~~~~~-----gR~t~~CP~CQ 262 (266)
T 1ee8_A 236 LPCPACGRPVERRVVA-----GRGTHFCPTCQ 262 (266)
T ss_dssp SBCTTTCCBCEEEESS-----SCEEEECTTTT
T ss_pred CCCCCCCCEeeEEEEC-----CCceEECCCCC
Confidence 5599999887655543 89999999996
No 39
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=76.90 E-value=7.1 Score=23.38 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
..|+.++.++..+-..|+.++..|+.|+.
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666643
No 40
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=76.49 E-value=1.4 Score=30.21 Aligned_cols=27 Identities=22% Similarity=0.651 Sum_probs=22.2
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCee
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNF 46 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF 46 (99)
..||.||...+.+++. --|.|+.|++-
T Consensus 61 ytCPfCGk~~vKR~av-------GIW~C~~Cgk~ 87 (116)
T 3cc2_Z 61 HACPNCGEDRVDRQGT-------GIWQCSYCDYK 87 (116)
T ss_dssp EECSSSCCEEEEEEET-------TEEEETTTCCE
T ss_pred CcCCCCCCceeEecCc-------eeEECCCCCCE
Confidence 6799999988888875 27899999854
No 41
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=76.45 E-value=5.1 Score=26.74 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHKELEHT 90 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~El~~~ 90 (99)
+.+..++++...+++.|++++..|+.||+..
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555667777788899999999999998864
No 42
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=75.77 E-value=4.6 Score=23.87 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=22.5
Q ss_pred CCcccccCccccceeeeecCCCCCCcceeeCCCCCeeEe
Q 041503 10 NSLQVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQW 48 (99)
Q Consensus 10 ~~~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W 48 (99)
.....||.||..-.++ ++.+--+.|..|++..=
T Consensus 9 l~~~~Cp~C~~~~lv~------D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 9 LPRVTCPNHPDAILVE------DYRAGDMICPECGLVVG 41 (58)
T ss_dssp CSCCSBTTBSSSCCEE------CSSSCCEECTTTCCEEC
T ss_pred cccccCcCCCCCceeE------eCCCCeEEeCCCCCEEe
Confidence 3446899999844433 34555689999997653
No 43
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=75.40 E-value=4.2 Score=22.32 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 58 KIDLLVEEVRKLTLEIERLSDKFRLL 83 (99)
Q Consensus 58 k~~~l~~ei~e~~~ei~~l~~k~~~l 83 (99)
|..+.+.+|+++..+-.-|..+++.|
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 44555666766666666666555544
No 44
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=75.08 E-value=0.95 Score=29.97 Aligned_cols=25 Identities=20% Similarity=0.531 Sum_probs=17.9
Q ss_pred cccccCccccceeeeecCCCCCCccee-eCCCCCe
Q 041503 12 LQVCNECGGQIELFTSHTTKNPNRKFW-KCRVCKN 45 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy-~C~~C~f 45 (99)
..+|+.||..... ...++ .||.|+-
T Consensus 73 ~~~C~~CG~~~e~---------~~~~~~~CP~Cgs 98 (119)
T 2kdx_A 73 ELECKDCSHVFKP---------NALDYGVCEKCHS 98 (119)
T ss_dssp EEECSSSSCEECS---------CCSTTCCCSSSSS
T ss_pred eEEcCCCCCEEeC---------CCCCCCcCccccC
Confidence 3789999976554 23477 8998873
No 45
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=74.67 E-value=1.5 Score=25.20 Aligned_cols=33 Identities=27% Similarity=0.646 Sum_probs=20.6
Q ss_pred cccccCccccce---eeeecCCCCCCcceeeCCCCC
Q 041503 12 LQVCNECGGQIE---LFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 12 ~~~Cp~Cg~~~~---~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
...|+.||.... .+........+.+.|.|+.|+
T Consensus 18 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~ 53 (77)
T 2cot_A 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECG 53 (77)
T ss_dssp SSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSC
T ss_pred CEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCC
Confidence 388999997432 122222234456779999887
No 46
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.33 E-value=9.3 Score=22.56 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 59 IDLLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 59 ~~~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
+..|+.++.++..+-..|..++..|..|+.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777766653
No 47
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=73.20 E-value=4.7 Score=25.08 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041503 62 LVEEVRKLTLEIERLSDKFRLL 83 (99)
Q Consensus 62 l~~ei~e~~~ei~~l~~k~~~l 83 (99)
|+.++++.+.+|++|+.++.++
T Consensus 30 LE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 30 LEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555444443
No 48
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=73.02 E-value=2.6 Score=23.70 Aligned_cols=30 Identities=23% Similarity=0.562 Sum_probs=21.0
Q ss_pred cccccCccccceeeeecCCCCCCcceeeCCCCCeeE
Q 041503 12 LQVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQ 47 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~ 47 (99)
...||.||..-.++ ++.+.-+.|+.|++-.
T Consensus 5 ~~~CP~C~~~~l~~------d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIY------DPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEE------ETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEE------cCCCCeEECcccCCcc
Confidence 46899998843333 3456678999998754
No 49
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=72.29 E-value=7.5 Score=30.81 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 58 KIDLLVEEVRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 58 k~~~l~~ei~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
+++.+..||+++..+.++|+.++..++.|+++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 35 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKE 35 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665555555555555555555443
No 50
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=72.12 E-value=2.7 Score=28.20 Aligned_cols=37 Identities=24% Similarity=0.602 Sum_probs=27.6
Q ss_pred cccccCccccceeeeecCCCCCCcceeeCCCCCeeEeccC
Q 041503 12 LQVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAED 51 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~De 51 (99)
..-||.||-....... +.++...|.|+.|+|-.=.+.
T Consensus 4 ~~FCp~CgnlL~~~~~---~~~~~~~~~C~~C~y~~~~~~ 40 (122)
T 1twf_I 4 FRFCRDCNNMLYPRED---KENNRLLFECRTCSYVEEAGS 40 (122)
T ss_dssp CCBCSSSCCBCEEEEE---TTTTEEEEECSSSSCEEECSC
T ss_pred CCcccccCccCccccc---CcCCCCEEECCcCCCeeecCc
Confidence 4679999976655442 356788999999998776654
No 51
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=71.46 E-value=2.5 Score=27.35 Aligned_cols=27 Identities=26% Similarity=0.699 Sum_probs=21.5
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCee
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNF 46 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF 46 (99)
-.||.||...+.+++.. -|.|..|++-
T Consensus 36 y~CpfCGk~~vkR~a~G-------IW~C~kCg~~ 62 (83)
T 3j21_i 36 HTCPVCGRKAVKRISTG-------IWQCQKCGAT 62 (83)
T ss_dssp BCCSSSCSSCEEEEETT-------EEEETTTCCE
T ss_pred cCCCCCCCceeEecCcC-------eEEcCCCCCE
Confidence 67999999988887743 6889989853
No 52
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=71.44 E-value=2.6 Score=22.87 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=22.7
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEe
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQW 48 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W 48 (99)
+.||.|+.+=..++.. | +--|.+|..|+...=
T Consensus 1 VlC~~C~~peT~l~~~---~-~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 1 VICRECGKPDTKIIKE---G-RVHLLKCMACGAIRP 32 (36)
T ss_dssp CCCSSSCSCEEEEEEE---T-TEEEEEEETTTEEEE
T ss_pred CCCcCCCCCCcEEEEe---C-CcEEEEhhcCCCccc
Confidence 5799999876665553 2 566778999987643
No 53
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=70.74 E-value=3.2 Score=24.53 Aligned_cols=31 Identities=19% Similarity=0.553 Sum_probs=21.3
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEecc
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAE 50 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~D 50 (99)
..||.||..+.+- .. .-.|.|+.|++-.|..
T Consensus 19 ~fCPkCG~~~~ma--~~-----~dr~~C~kCgyt~~~~ 49 (55)
T 2k4x_A 19 RFCPRCGPGVFLA--EH-----ADRYSCGRCGYTEFKK 49 (55)
T ss_dssp CCCTTTTTTCCCE--EC-----SSEEECTTTCCCEECC
T ss_pred ccCcCCCCceeEe--cc-----CCEEECCCCCCEEEeC
Confidence 7899999755322 11 2378899999877754
No 54
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=70.49 E-value=2.1 Score=27.59 Aligned_cols=28 Identities=21% Similarity=0.619 Sum_probs=20.7
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
..||.|+....-+.. ||++..|.|-+|+
T Consensus 38 ~~CPfh~e~~pSf~V----~~~k~~~~Cf~cg 65 (103)
T 1d0q_A 38 GLCPFHGEKTPSFSV----SPEKQIFHCFGCG 65 (103)
T ss_dssp ECCSSSCCSSCCEEE----ETTTTEEEETTTC
T ss_pred EECCCCCCCCCcEEE----EcCCCEEEECCCC
Confidence 689999875433333 4678899999998
No 55
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=70.24 E-value=1.5 Score=30.17 Aligned_cols=35 Identities=17% Similarity=0.440 Sum_probs=20.2
Q ss_pred cccccCccccceeeeecCC--CCCCcc----------eeeCCCCCee
Q 041503 12 LQVCNECGGQIELFTSHTT--KNPNRK----------FWKCRVCKNF 46 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~t~--~NPgR~----------Fy~C~~C~fF 46 (99)
...|+.||.....--+... ..-... |++||.|+-.
T Consensus 70 ~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 70 VFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp EEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred cEECCCCCCEEecccccccccccccccccccccccccCCcCccccCC
Confidence 4899999976443221111 111224 8999999743
No 56
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.89 E-value=8.2 Score=23.94 Aligned_cols=21 Identities=43% Similarity=0.556 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041503 68 KLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 68 e~~~ei~~l~~k~~~l~~El~ 88 (99)
.+..+...|++++..|..||+
T Consensus 47 ~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 47 STTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666665
No 57
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=69.64 E-value=12 Score=23.41 Aligned_cols=30 Identities=33% Similarity=0.458 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 59 IDLLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 59 ~~~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
+..|+.+..++..+++.|+.+++.|+..|+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555666677777777777766664
No 58
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=69.58 E-value=0.51 Score=24.51 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=17.8
Q ss_pred CcccccCcccccee---eeecCCCCCCcceeeCCCCC
Q 041503 11 SLQVCNECGGQIEL---FTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 11 ~~~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C~ 44 (99)
....|+.||+.... +........+.+.|.|+.|+
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45 (45)
T ss_dssp CSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred CCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence 34788888864321 11111122355677888764
No 59
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=69.50 E-value=12 Score=23.03 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 62 LVEEVRKLTLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 62 l~~ei~e~~~ei~~l~~k~~~l~~El 87 (99)
|..++.++..+++.|+.++..|+..|
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555554444
No 60
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=68.51 E-value=8.4 Score=23.17 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 61 LLVEEVRKLTLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 61 ~l~~ei~e~~~ei~~l~~k~~~l~~El 87 (99)
.|+.++.+|..+-..|..++..|+.+|
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555554444
No 61
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=68.50 E-value=3.2 Score=32.15 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=27.7
Q ss_pred cccccCccccce-eeeecCC-----CCCCcceeeCCCCC-eeEeccCC
Q 041503 12 LQVCNECGGQIE-LFTSHTT-----KNPNRKFWKCRVCK-NFQWAEDR 52 (99)
Q Consensus 12 ~~~Cp~Cg~~~~-~~tS~t~-----~NPgR~Fy~C~~C~-fF~W~De~ 52 (99)
..+||.||..-. .+.+-.+ ..++-+.+.|..|+ |++=.|..
T Consensus 222 R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK~~~~~ 269 (309)
T 2fiy_A 222 RIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLE 269 (309)
T ss_dssp TTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEEEETT
T ss_pred CcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHhhhhhc
Confidence 389999997422 2222222 35889999999999 77766654
No 62
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=68.20 E-value=21 Score=22.99 Aligned_cols=9 Identities=44% Similarity=0.375 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 041503 59 IDLLVEEVR 67 (99)
Q Consensus 59 ~~~l~~ei~ 67 (99)
+++|++||+
T Consensus 16 QSALeaEIq 24 (81)
T 1wt6_A 16 QEALEEEVL 24 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555654
No 63
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=68.16 E-value=0.98 Score=25.76 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=19.6
Q ss_pred CcccccCcccccee---eeecCCCCCCcceeeCCCCC
Q 041503 11 SLQVCNECGGQIEL---FTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 11 ~~~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C~ 44 (99)
....|+.|++.... +........+.+.|+|+.|+
T Consensus 13 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~ 49 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECG 49 (72)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSC
T ss_pred CCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCC
Confidence 34889999974321 11111123345669999987
No 64
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=68.12 E-value=2.4 Score=26.79 Aligned_cols=26 Identities=27% Similarity=0.703 Sum_probs=19.7
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCe
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKN 45 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~f 45 (99)
-.||.||...+.+++. --|.|..|++
T Consensus 27 y~C~fCgk~~vkR~a~-------GIW~C~~C~~ 52 (72)
T 3jyw_9 27 YDCSFCGKKTVKRGAA-------GIWTCSCCKK 52 (72)
T ss_dssp BCCSSCCSSCBSBCSS-------SCBCCSSSCC
T ss_pred ccCCCCCCceeEecCC-------CeEECCCCCC
Confidence 6799999988777653 3577888873
No 65
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=68.10 E-value=5 Score=26.48 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=26.5
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEeccCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAEDR 52 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~De~ 52 (99)
.-||.||-...... +...++.-|.|+.|+|-.-.|..
T Consensus 5 ~FCp~Cgn~L~~~~---~~~~~~~~~~C~~C~y~~~~~~~ 41 (113)
T 3h0g_I 5 QYCIECNNMLYPRE---DKVDRVLRLACRNCDYSEIAATS 41 (113)
T ss_dssp CCCSSSCCCCEECC---CTTTCCCCEECSSSCCEECCSCS
T ss_pred eeCcCCCCEeeEcc---cCCCCeeEEECCCCCCeEEcCCC
Confidence 56999998765543 22346778999999987766653
No 66
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=67.18 E-value=3.5 Score=25.23 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=20.6
Q ss_pred ccccCcccc-ceeeee---cCCCC-----CCcceeeCCCCCeeEeccC
Q 041503 13 QVCNECGGQ-IELFTS---HTTKN-----PNRKFWKCRVCKNFQWAED 51 (99)
Q Consensus 13 ~~Cp~Cg~~-~~~~tS---~t~~N-----PgR~Fy~C~~C~fF~W~De 51 (99)
-+||.||.. ++.-+. -+-+. ++=+.|-|+.|+=-.+.++
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~~e 50 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKE 50 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECCHH
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEECHH
Confidence 579999864 221111 11111 2335688999985444433
No 67
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=66.91 E-value=4.9 Score=25.78 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041503 69 LTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 69 ~~~ei~~l~~k~~~l~~El~ 88 (99)
+..-..+++.++.+|.+||+
T Consensus 56 ~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 56 VKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33334444444445555544
No 68
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.71 E-value=1.9 Score=22.32 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=15.8
Q ss_pred cccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 12 LQVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
...|+.||+.... +........|.+.|+|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2elz_A 12 PYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG 46 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred CeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence 4778888864221 1111112234455777755
No 69
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.45 E-value=5.3 Score=23.93 Aligned_cols=30 Identities=27% Similarity=0.534 Sum_probs=18.5
Q ss_pred CCCCCCCCCCcccccCccccceeeeecCCCCCCcceeeCCCCCe
Q 041503 2 SSSTNESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKCRVCKN 45 (99)
Q Consensus 2 SSSs~~~~~~~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~f 45 (99)
|+++...+.+...|--|+.. ..|+||.|..
T Consensus 2 ~~~~~~~~~~~~~C~vC~~~--------------~kY~CPrC~~ 31 (56)
T 2yqq_A 2 SSGSSGLKCSTVVCVICLEK--------------PKYRCPACRV 31 (56)
T ss_dssp CCCCCCCCCCCCCCTTTCSC--------------CSEECTTTCC
T ss_pred CCcccccCCCCCccCcCcCC--------------CeeeCCCCCC
Confidence 45555555555677446652 2589998864
No 70
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=66.32 E-value=11 Score=19.42 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041503 68 KLTLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 68 e~~~ei~~l~~k~~~l~~El 87 (99)
++-.|++.|+...++|++-|
T Consensus 5 elykeledlqerlrklrkkl 24 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44455556666666665544
No 71
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=65.99 E-value=17 Score=23.39 Aligned_cols=24 Identities=46% Similarity=0.544 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
++.+|..|=..|++++..|+.|+.
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777777766665
No 72
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=65.68 E-value=3.3 Score=31.87 Aligned_cols=28 Identities=29% Similarity=0.931 Sum_probs=17.2
Q ss_pred ccccCcccc-ceeeeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQ-IELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~-~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
..||.||.. ...+-. ..|-.-|| |+.|+
T Consensus 35 ~yCPnCG~~~l~~f~n---N~PVaDF~-C~~C~ 63 (257)
T 4esj_A 35 SYCPNCGNNPLNHFEN---NRPVADFY-CNHCS 63 (257)
T ss_dssp CCCTTTCCSSCEEC-------CCCEEE-CTTTC
T ss_pred CcCCCCCChhhhhccC---CCcccccc-cCCcc
Confidence 789999974 433332 33667777 78774
No 73
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=65.64 E-value=5.5 Score=24.81 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=15.6
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
..||.|+..+..- |+..-..||.|+
T Consensus 26 ~wCP~C~~~~~~~-------~~~~~v~C~~C~ 50 (86)
T 2ct7_A 26 LWCAQCSFGFIYE-------REQLEATCPQCH 50 (86)
T ss_dssp ECCSSSCCCEECC-------CSCSCEECTTTC
T ss_pred eECcCCCchheec-------CCCCceEeCCCC
Confidence 5699998866432 122336888776
No 74
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=65.37 E-value=4.1 Score=25.99 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=20.9
Q ss_pred CcccccCccccceeeeecCCCCCCc
Q 041503 11 SLQVCNECGGQIELFTSHTTKNPNR 35 (99)
Q Consensus 11 ~~~~Cp~Cg~~~~~~tS~t~~NPgR 35 (99)
...-||.||.....+++-+.++.|.
T Consensus 29 ~k~FCp~CGn~TL~Rvsvsvd~~G~ 53 (79)
T 2con_A 29 NRVFCGHCGNKTLKKVSVTINDDGT 53 (79)
T ss_dssp SCCSCSSSCCSCCEEEECBCCSSCC
T ss_pred ccccccccCcccceEEEEEECCCCc
Confidence 3478999999999999998877674
No 75
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=65.14 E-value=6.4 Score=24.84 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041503 67 RKLTLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 67 ~e~~~ei~~l~~k~~~l~~El 87 (99)
+++..+|.+..+.|+.|+.||
T Consensus 43 ~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 43 DELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 76
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=65.02 E-value=1.6 Score=22.55 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=15.4
Q ss_pred cccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 12 LQVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
...|+.||+.... +........|-+.|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2el6_A 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG 46 (46)
T ss_dssp SEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred CeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 3678888863221 1111112234455777654
No 77
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.55 E-value=3.1 Score=21.33 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=17.0
Q ss_pred cccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 12 LQVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
...|+.||+.... +........|.+.|+|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2epz_A 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG 46 (46)
T ss_dssp SBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred CeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 3778888864221 1111223345566888755
No 78
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=64.43 E-value=4.5 Score=23.80 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=9.7
Q ss_pred CcccccCcccccee
Q 041503 11 SLQVCNECGGQIEL 24 (99)
Q Consensus 11 ~~~~Cp~Cg~~~~~ 24 (99)
+.++||.||..+..
T Consensus 22 P~IrCpyCGyrii~ 35 (48)
T 4ayb_P 22 PGVRCPYCGYKIIF 35 (48)
T ss_dssp SSSCCTTTCCSCEE
T ss_pred CCcccCccCcEEEE
Confidence 34888888876544
No 79
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.07 E-value=1.9 Score=22.16 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=6.7
Q ss_pred cccccCcccc
Q 041503 12 LQVCNECGGQ 21 (99)
Q Consensus 12 ~~~Cp~Cg~~ 21 (99)
...|+.||+.
T Consensus 12 ~~~C~~C~k~ 21 (45)
T 2epu_A 12 PFECTHCGKS 21 (45)
T ss_dssp SEEETTTTEE
T ss_pred CccCCCCCCc
Confidence 3677777753
No 80
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=63.79 E-value=14 Score=25.44 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELEHT 90 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~~~ 90 (99)
.|.++..||..|+.+++....|+++-
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888777777653
No 81
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.24 E-value=22 Score=22.33 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
||++.++.|+.|.+.++....++.
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666555555544443
No 82
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=63.24 E-value=12 Score=22.79 Aligned_cols=25 Identities=44% Similarity=0.588 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
||+++-.||.+|+.....|.+|.-+
T Consensus 35 Ei~KL~LEIQKL~~EL~glskefle 59 (65)
T 2yf2_A 35 EIRKLFLEIQKLKVELQGLSKEFLE 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcchhHHHHH
Confidence 6777777777777777777666544
No 83
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=62.05 E-value=8.2 Score=22.70 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041503 68 KLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 68 e~~~ei~~l~~k~~~l~~El~ 88 (99)
++..+++.|.+++..|+.+++
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445544443
No 84
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=61.85 E-value=7.5 Score=23.56 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 041503 74 ERLSDKFRLLHKELEHTQLRSKYGL 98 (99)
Q Consensus 74 ~~l~~k~~~l~~El~~~~~~~~~~~ 98 (99)
+.|..+|+..++||.+-+. +||+
T Consensus 4 ~~L~~~IE~kR~eL~~l~~--k~Gl 26 (62)
T 2bzb_A 4 GQLKNKIENKKKELIQLVA--RHGL 26 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHC
T ss_pred HHHHHHHHHHHHHHHHHHH--HcCC
Confidence 3455555556666666555 5565
No 85
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=61.70 E-value=8.9 Score=24.85 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 59 IDLLVEEVRKLTLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 59 ~~~l~~ei~e~~~ei~~l~~k~~~l~~El 87 (99)
...|+++|.+|..++..|.+++..+..+|
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567777777777777777776665543
No 86
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=61.17 E-value=20 Score=25.52 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041503 63 VEEVRKLTLEIERLSDKFRLLHKELEHTQLRSK 95 (99)
Q Consensus 63 ~~ei~e~~~ei~~l~~k~~~l~~El~~~~~~~~ 95 (99)
++.+.+.+.-.+.|..+|-.|++||+.+.+...
T Consensus 104 EADLKEKDsMVe~LT~TiG~LrKELEdEklK~~ 136 (167)
T 4gkw_A 104 EADLKEKDSMVESLTETIGILRKELENEKLKAA 136 (167)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555677788899999999999887643
No 87
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=60.83 E-value=21 Score=20.36 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHK---ELEHTQ 91 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~---El~~~~ 91 (99)
+.|..-|..++.||...+.+|-.+++ ||++.+
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566689999999999998887764 555544
No 88
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=60.45 E-value=3.8 Score=32.09 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=20.9
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
..||.|+....-+.. ||.+.+|.|-+|+
T Consensus 35 ~~CPfh~ektpSf~V----~~~k~~~~CFgCg 62 (407)
T 2au3_A 35 TNCPFHPDDTPSFYV----SPSKQIFKCFGCG 62 (407)
T ss_dssp ECCSSSCCSSCCEEE----ETTTTEEEETTTC
T ss_pred eeCcCCCCCCCeEEE----ECCCCEEEECCCC
Confidence 589999976543433 4667899999997
No 89
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=59.71 E-value=7.6 Score=22.77 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 61 LLVEEVRKLTLEIERLSDKFRLLH 84 (99)
Q Consensus 61 ~l~~ei~e~~~ei~~l~~k~~~l~ 84 (99)
.|+.+|..|..+-..|..++..|+
T Consensus 26 ~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 26 SLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 90
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=59.57 E-value=1.5 Score=26.51 Aligned_cols=32 Identities=19% Similarity=0.668 Sum_probs=17.3
Q ss_pred ccccCcccccee---eeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQIEL---FTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C~ 44 (99)
..|+.||..... +........+.+.|.|+.|+
T Consensus 18 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~ 52 (106)
T 2ee8_A 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICH 52 (106)
T ss_dssp CBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSC
T ss_pred eECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCcc
Confidence 789889864321 11111122344568888776
No 91
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.13 E-value=4.6 Score=20.68 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=17.0
Q ss_pred cccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 12 LQVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
...|+.||+.... +........|.+.|+|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ytq_A 12 PYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG 46 (46)
T ss_dssp SCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred CcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence 3778888864222 1111223445566888755
No 92
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=58.78 E-value=28 Score=21.82 Aligned_cols=24 Identities=46% Similarity=0.544 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
.+.+|..|=..|+.++..|..|+.
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666654
No 93
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=58.58 E-value=28 Score=22.43 Aligned_cols=25 Identities=36% Similarity=0.392 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
|.++|-..|+.++..+..|++|+++
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~e 71 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKE 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555443
No 94
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=58.50 E-value=28 Score=22.23 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 041503 58 KIDLLVEEVRKLTLEIERLSD 78 (99)
Q Consensus 58 k~~~l~~ei~e~~~ei~~l~~ 78 (99)
.+.+|+.||++++.+-..|.+
T Consensus 21 tI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666655554433
No 95
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.47 E-value=8.3 Score=23.47 Aligned_cols=29 Identities=21% Similarity=0.512 Sum_probs=18.1
Q ss_pred ccccCccccceeeeecCCCCCCcce----eeCCCCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKF----WKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~F----y~C~~C~ 44 (99)
.+|+.|++++...... --|+.| |+|..|+
T Consensus 26 ~~C~~C~~~I~~~~v~---a~~~~~H~~CF~C~~C~ 58 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLV---ALGKSWHPEEFNCAHCK 58 (90)
T ss_dssp CBBSSSCCBCCSCEEE---ETTEEECTTTCBCSSSC
T ss_pred CCCccCCCEecceEEE---ECCccccccCCccCCCC
Confidence 6799999876433222 235666 6777664
No 96
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=57.67 E-value=6.1 Score=27.68 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=19.9
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEec
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWA 49 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~ 49 (99)
..||.|+..... ....|.|+.|++|--.
T Consensus 3 ~~Cp~C~~~~~~---------~~~~~~C~~~~~~~~~ 30 (269)
T 1p91_A 3 FSCPLCHQPLSR---------EKNSYICPQRHQFDMA 30 (269)
T ss_dssp BBCTTTCCBCEE---------ETTEEECTTCCEEEBC
T ss_pred ccCCCCCcccee---------CCCEEECCCCCcCCcC
Confidence 579999875433 2357999999887643
No 97
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=56.85 E-value=29 Score=27.42 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 58 KIDLLVEEVRKLTLEIERLSDKFRLLHKELEHTQLR 93 (99)
Q Consensus 58 k~~~l~~ei~e~~~ei~~l~~k~~~l~~El~~~~~~ 93 (99)
++..|+.++.++..+|++++..++.+.+.|.++...
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 46 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETV 46 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777777766655443
No 98
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=56.79 E-value=28 Score=21.96 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
.++.+..+|+.|..++..+..++++
T Consensus 78 ~~e~ie~~i~~le~~~~~l~~~l~~ 102 (117)
T 2zqm_A 78 KIETLEVRLNALERQEKKLNEKLKE 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666565555555554
No 99
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=56.49 E-value=22 Score=20.41 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 59 IDLLVEEVRKLTLEIERLSDKFRLL 83 (99)
Q Consensus 59 ~~~l~~ei~e~~~ei~~l~~k~~~l 83 (99)
.++|+.|+..+...+..|+.+.++|
T Consensus 22 laaleselqalekklaalksklqal 46 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555544555555544444
No 100
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=56.09 E-value=26 Score=27.87 Aligned_cols=31 Identities=29% Similarity=0.164 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHKELEHT 90 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~El~~~ 90 (99)
+.|..|++++.++++++..+++.++.|++..
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655555555555555555443
No 101
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=56.08 E-value=32 Score=21.78 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 59 IDLLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 59 ~~~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
.++|+.|+.+.+.||.+|++.+.---+++|
T Consensus 20 l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~E 49 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRLKEVIALKNKNTE 49 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 355666777777777777655544434433
No 102
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=55.50 E-value=30 Score=21.91 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 61 LLVEEVRKLTLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 61 ~l~~ei~e~~~ei~~l~~k~~~l~~El 87 (99)
...+++.++..++..|+.++..+..++
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~ 94 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELEREL 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444554444444444443
No 103
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=55.28 E-value=30 Score=21.90 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 56 NEKIDLLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 56 ~~k~~~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
-.....+.+++.++..++..++.++..|..++.
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677888888888888888888888876
No 104
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=55.25 E-value=12 Score=24.55 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041503 67 RKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 67 ~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
.++..+++.++++++.++.||+.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~ 32 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVAR 32 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666654
No 105
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=55.14 E-value=4.1 Score=24.60 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=15.5
Q ss_pred cccccCccccceeeeecCCCCCCcceeeCCCCCeeE
Q 041503 12 LQVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQ 47 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~ 47 (99)
...||.||..- ++-..|+.|+|+.
T Consensus 30 l~~c~~cGe~~------------~~H~vc~~CG~Y~ 53 (60)
T 3v2d_5 30 LVPCPECKAMK------------PPHTVCPECGYYA 53 (60)
T ss_dssp CEECTTTCCEE------------CTTSCCTTTCEET
T ss_pred eeECCCCCCee------------cceEEcCCCCcCC
Confidence 48888888732 2233488888763
No 106
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=54.91 E-value=1.7 Score=24.77 Aligned_cols=34 Identities=24% Similarity=0.651 Sum_probs=19.5
Q ss_pred CcccccCcccccee---eeecCCCCCCcceeeCCCCC
Q 041503 11 SLQVCNECGGQIEL---FTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 11 ~~~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C~ 44 (99)
....|+.||+.... +........+.+.|+|+.|+
T Consensus 16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~ 52 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICG 52 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTC
T ss_pred CCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCC
Confidence 34889999974321 11111122345669999887
No 107
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=54.88 E-value=13 Score=22.55 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 041503 74 ERLSDKFRLLHKELEHTQLRSKYGLS 99 (99)
Q Consensus 74 ~~l~~k~~~l~~El~~~~~~~~~~~~ 99 (99)
..|..+|+..++||.+-+ .+||++
T Consensus 4 ~~L~~~IE~kR~eL~~l~--~k~Gl~ 27 (64)
T 2c0s_A 4 TKLNDRIEAKKKELIYLV--EKYGFT 27 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHTCTT
T ss_pred HHHHHHHHHHHHHHHHHH--HHcCCC
Confidence 345555666667776666 356663
No 108
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.62 E-value=2.6 Score=21.66 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=15.8
Q ss_pred ccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 13 QVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 13 ~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
..|+.||+.... +........|.+.|+|+.|
T Consensus 13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ene_A 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp EECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred eECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence 678788763221 1122223445566777654
No 109
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.49 E-value=17 Score=21.60 Aligned_cols=33 Identities=18% Similarity=0.441 Sum_probs=20.5
Q ss_pred CCCcccccCccccceeeeecCCCCCCcce----eeCCCCC
Q 041503 9 RNSLQVCNECGGQIELFTSHTTKNPNRKF----WKCRVCK 44 (99)
Q Consensus 9 ~~~~~~Cp~Cg~~~~~~tS~t~~NPgR~F----y~C~~C~ 44 (99)
.....+|+.|+.++.... ..--|+.| |+|..|+
T Consensus 12 ~~~~~~C~~C~~~I~~~~---v~a~~~~~H~~CF~C~~C~ 48 (79)
T 2cor_A 12 GLGKYICQKCHAIIDEQP---LIFKNDPYHPDHFNCANCG 48 (79)
T ss_dssp CCCCCBCTTTCCBCCSCC---CCCSSSCCCTTTSBCSSSC
T ss_pred ccCCCCCccCCCEecceE---EEECcceeCCCCCEeCCCC
Confidence 344589999999766322 22335655 6777664
No 110
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=54.10 E-value=7.1 Score=23.90 Aligned_cols=27 Identities=22% Similarity=0.714 Sum_probs=18.8
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeE
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQ 47 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~ 47 (99)
-+|..||....+. + +.-.+||.|++-+
T Consensus 22 Y~C~~Cg~~~~l~-------~-~~~iRC~~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARNTIQ-------A-KEVIRCRECGHRV 48 (63)
T ss_dssp CBCSSSCCBCCCC-------S-SSCCCCSSSCCCC
T ss_pred EECCCCCCeeecC-------C-CCceECCCCCcEE
Confidence 7899999877644 1 3457899887644
No 111
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=54.06 E-value=31 Score=22.53 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 57 EKIDLLVEEVRKLTLEIERLSDKFRLLHKELEHT 90 (99)
Q Consensus 57 ~k~~~l~~ei~e~~~ei~~l~~k~~~l~~El~~~ 90 (99)
.|...+...++++...+..+++++..+..+|.+.
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555567788888888888888887777654
No 112
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=54.04 E-value=28 Score=25.20 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHKELEHT 90 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~El~~~ 90 (99)
+.|+.+|+.|..++...+.++..++.||..+
T Consensus 138 ~kLqkeiD~LEDeL~~eKek~k~i~~eLDqT 168 (175)
T 3mud_A 138 AKNEKSIDDLEEKVAHAKEENLNMHQMLDQT 168 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666666666666554
No 113
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=53.76 E-value=6.5 Score=27.70 Aligned_cols=22 Identities=32% Similarity=0.794 Sum_probs=14.2
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
.+|+.||.... ..-|. +||.|+
T Consensus 139 ~~C~~CG~i~~------~~~p~----~CP~Cg 160 (170)
T 3pwf_A 139 YICPICGYTAV------DEAPE----YCPVCG 160 (170)
T ss_dssp EECTTTCCEEE------SCCCS----BCTTTC
T ss_pred eEeCCCCCeeC------CCCCC----CCCCCC
Confidence 66888886544 23444 788777
No 114
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=53.63 E-value=23 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
+++....||.+|+.+++.|+-||+-
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667888888888888888763
No 115
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.32 E-value=2.5 Score=21.61 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=15.1
Q ss_pred ccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 13 QVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 13 ~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
..|+.||+.... +........|.+.|+|+.|
T Consensus 13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2en8_A 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG 46 (46)
T ss_dssp EECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred eECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 667777753221 1111223344556777654
No 116
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=53.18 E-value=37 Score=21.34 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 62 LVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 62 l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
|+.+...+..+++.|+.+.+.|..+|.
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566667767777766664
No 117
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=53.16 E-value=33 Score=20.87 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 64 EEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 64 ~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
+|++.+ .|+.+|=..|++|++||-
T Consensus 28 ~~~rTL-LEi~KL~LEIQKL~~EL~ 51 (65)
T 2yf2_A 28 EDVKTL-LEIRKLFLEIQKLKVELQ 51 (65)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHc
Confidence 356666 788888889999988874
No 118
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=52.81 E-value=4.1 Score=24.56 Aligned_cols=24 Identities=25% Similarity=0.670 Sum_probs=15.2
Q ss_pred cccccCccccceeeeecCCCCCCcceeeCCCCCeeE
Q 041503 12 LQVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQ 47 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~ 47 (99)
...||.||..-. +-.-|+.|+|+.
T Consensus 30 l~~c~~cG~~~~------------pH~vc~~CG~Y~ 53 (60)
T 2zjr_Z 30 LTECPQCHGKKL------------SHHICPNCGYYD 53 (60)
T ss_dssp CEECTTTCCEEC------------TTBCCTTTCBSS
T ss_pred ceECCCCCCEeC------------CceEcCCCCcCC
Confidence 478989987521 223477788663
No 119
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=52.49 E-value=34 Score=22.92 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLH 84 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~ 84 (99)
.++.+|+.+.+.++..|++++..|+
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk 31 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYK 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455565555555555555554443
No 120
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.44 E-value=6.7 Score=19.86 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=16.9
Q ss_pred cccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 12 LQVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
...|+.||+.... +........|.+.|.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2ytr_A 12 PYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp TTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred CcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence 3678888864221 1111223345556888755
No 121
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.40 E-value=6.3 Score=20.00 Aligned_cols=32 Identities=19% Similarity=0.128 Sum_probs=16.2
Q ss_pred cccccCcccccee---eeecCC-CCCCcceeeCCCC
Q 041503 12 LQVCNECGGQIEL---FTSHTT-KNPNRKFWKCRVC 43 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~---~tS~t~-~NPgR~Fy~C~~C 43 (99)
...|+.||+.... +..... ...|.+.|.|+.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C 47 (47)
T 2epx_A 12 PYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG 47 (47)
T ss_dssp SBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred CEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence 3678888864221 111112 2345556777655
No 122
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=52.32 E-value=35 Score=20.93 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041503 68 KLTLEIERLSDKFRLLHKE 86 (99)
Q Consensus 68 e~~~ei~~l~~k~~~l~~E 86 (99)
.+..|++.|+.++++|+.|
T Consensus 38 ~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 38 SLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhh
Confidence 5667777788788887766
No 123
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.12 E-value=4.4 Score=20.67 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=14.9
Q ss_pred ccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 13 QVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 13 ~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
..|+.||+.... +........|.+.|.|+.|
T Consensus 13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2ysp_A 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG 46 (46)
T ss_dssp EEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred eECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence 677777763211 1111222334455777654
No 124
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=51.67 E-value=23 Score=18.10 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041503 70 TLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 70 ~~ei~~l~~k~~~l~~El~ 88 (99)
+.|..+|+-..++|+.|++
T Consensus 6 kdevgelkgevralkdevk 24 (27)
T 3v86_A 6 KDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHh
Confidence 3344444444445555554
No 125
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.66 E-value=1.5 Score=22.75 Aligned_cols=10 Identities=40% Similarity=0.923 Sum_probs=6.3
Q ss_pred cccccCcccc
Q 041503 12 LQVCNECGGQ 21 (99)
Q Consensus 12 ~~~Cp~Cg~~ 21 (99)
...|+.||+.
T Consensus 12 ~~~C~~C~k~ 21 (46)
T 2ytt_A 12 PYQCSECGKS 21 (46)
T ss_dssp TTCCSSSCCC
T ss_pred CeeCCCCCcc
Confidence 3667777753
No 126
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=51.62 E-value=17 Score=18.74 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLH 84 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~ 84 (99)
++|+-|-+.+...|..|+++|-.|+
T Consensus 3 dalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHhc
Confidence 3455555566666777777766553
No 127
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=51.59 E-value=12 Score=24.09 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 61 LLVEEVRKLTLEIERLSDKFRLLHKE 86 (99)
Q Consensus 61 ~l~~ei~e~~~ei~~l~~k~~~l~~E 86 (99)
.+..||+++++.|..|| ++++|
T Consensus 56 QideeV~~LKe~IdaLN----K~Kke 77 (83)
T 1zke_A 56 QLSEEVERLKELINALN----KIKKG 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHGG
T ss_pred HHHHHHHHHHHHHHHHH----HHHHH
Confidence 44557777777777777 55544
No 128
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=51.56 E-value=26 Score=23.46 Aligned_cols=27 Identities=37% Similarity=0.528 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041503 66 VRKLTLEIERLSDKFRLLHKELEHTQLRSK 95 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El~~~~~~~~ 95 (99)
|++|..++++|+..++.|..| ..||..
T Consensus 67 v~eLe~everL~~ENq~L~~e---~~~~~~ 93 (104)
T 3s9g_A 67 VRELELELDRLRAENLQLLTE---NELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhcc
Confidence 566777777777777766444 445554
No 129
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=51.55 E-value=4.7 Score=24.89 Aligned_cols=32 Identities=19% Similarity=0.534 Sum_probs=19.3
Q ss_pred ccccCcccccee---eeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQIEL---FTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C~ 44 (99)
-.|+.||+.-.. +......-.|-+.|.|+.|+
T Consensus 29 h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~ 63 (85)
T 2lv2_A 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCP 63 (85)
T ss_dssp EECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSS
T ss_pred EECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCC
Confidence 579999974221 22222223456679999987
No 130
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=51.49 E-value=38 Score=21.95 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
..|+.|+.++..+++.|+..+..+..|+.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d 79 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERD 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666655543
No 131
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.28 E-value=3 Score=21.48 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=16.2
Q ss_pred cccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 12 LQVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
...|+.||+.... +........|.+.|+|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2em5_A 12 SHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG 46 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred CeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 3678888863221 1112222345556777655
No 132
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.08 E-value=41 Score=22.97 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041503 72 EIERLSDKFRLLHKELEHTQL 92 (99)
Q Consensus 72 ei~~l~~k~~~l~~El~~~~~ 92 (99)
+++.+...+..|+.||...++
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~ 103 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQI 103 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444
No 133
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.87 E-value=3.3 Score=21.15 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=15.6
Q ss_pred ccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 13 QVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 13 ~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
..|+.||+.... +........|-+.|.|+.|
T Consensus 13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2eop_A 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG 46 (46)
T ss_dssp CBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred eeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 678888864221 1111122344556777755
No 134
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=50.39 E-value=36 Score=19.93 Aligned_cols=31 Identities=10% Similarity=0.151 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 58 KIDLLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 58 k~~~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
|.+-|-++|.+|..++..|...+..++.|+.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666665555555544
No 135
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=50.38 E-value=8.6 Score=28.62 Aligned_cols=29 Identities=17% Similarity=0.434 Sum_probs=19.5
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEe
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQW 48 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W 48 (99)
..||.||.+.... .++.=..|+.|++..|
T Consensus 108 ~fC~~CG~~~~~~-------~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 108 KYCGYCGHEMYPS-------KTEWAMLCSHCRERYY 136 (269)
T ss_dssp SBCTTTCCBEEEC-------SSSSCEEESSSSCEEC
T ss_pred CccccCCCcCccC-------CCceeeeCCCCCCEec
Confidence 6799999877652 2344446888876555
No 136
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=50.26 E-value=36 Score=21.12 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 63 VEEVRKLTLEIERLSDKFRLLHKELEHTQ 91 (99)
Q Consensus 63 ~~ei~e~~~ei~~l~~k~~~l~~El~~~~ 91 (99)
...++.+..+|+.|..++..++.++++-.
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777777777777766543
No 137
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=50.25 E-value=10 Score=25.18 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=26.9
Q ss_pred CCCCCCCCc--ccccCccccceeeeecCCCCCCcceeeCCCCCeeEeccCCccchhhHHHHHH-----HHHHHHHHHHHH
Q 041503 4 STNESRNSL--QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAEDRKFSNEKIDLLVE-----EVRKLTLEIERL 76 (99)
Q Consensus 4 Ss~~~~~~~--~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~De~~~~~~k~~~l~~-----ei~e~~~ei~~l 76 (99)
+|++-+..- ..||.||..+-- + .=+.|..|+|=.|-- -.|.|...+.-+. -++-|.....+.
T Consensus 6 ~SfGkr~~KtH~lCrRCG~~sfH-~---------qK~~CgkCGYpa~k~-R~ynWs~Ka~rr~ttgtGrmr~lk~v~rrf 74 (97)
T 2zkr_2 6 SSFGKRRNKTHTLCRRCGSKAYH-L---------QKSTCGKCGYPAKRK-RKYNWSAKAKRRNTTGTGRMRHLKIVYRRF 74 (97)
T ss_dssp SSCSCSCCCCEECCTTTCSSCEE-T---------TSCCBTTTCTTTSSC-CCCSSSSCC---------------------
T ss_pred CCcccccCCCCCcCCCCCCccCc-C---------ccccCcccCCchHhc-cCcchhhhhhhccCCCcceehHHHHHHHHH
Confidence 455554332 899999987651 1 123799999832221 1356755443332 345554444444
Q ss_pred HHHHH
Q 041503 77 SDKFR 81 (99)
Q Consensus 77 ~~k~~ 81 (99)
+.-|+
T Consensus 75 kngfr 79 (97)
T 2zkr_2 75 RHGFR 79 (97)
T ss_dssp -----
T ss_pred hcccc
Confidence 43333
No 138
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=50.20 E-value=2.8 Score=28.89 Aligned_cols=31 Identities=29% Similarity=0.694 Sum_probs=23.0
Q ss_pred ccccCccccc----------eeeeecCCCCCCcce--eeCCCC
Q 041503 13 QVCNECGGQI----------ELFTSHTTKNPNRKF--WKCRVC 43 (99)
Q Consensus 13 ~~Cp~Cg~~~----------~~~tS~t~~NPgR~F--y~C~~C 43 (99)
++|+.||.+. ....|++.+-|.|.| +.|+.|
T Consensus 42 pkCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~C 84 (121)
T 3u5e_g 42 PKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANC 84 (121)
T ss_dssp CBCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHH
T ss_pred CCCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHH
Confidence 8899998631 235789999999998 556555
No 139
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=49.85 E-value=3.7 Score=22.96 Aligned_cols=33 Identities=21% Similarity=0.493 Sum_probs=19.0
Q ss_pred cccccCcccccee---eeecCCCCCCcceeeCCCCC
Q 041503 12 LQVCNECGGQIEL---FTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C~ 44 (99)
...|+.||+.... +........+.+.|.|+.|+
T Consensus 9 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~ 44 (70)
T 1x5w_A 9 PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCS 44 (70)
T ss_dssp SEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSS
T ss_pred CeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCC
Confidence 4789999974221 11111123345569999886
No 140
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=49.68 E-value=11 Score=33.75 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.3
Q ss_pred CCCCCCcceeeCCCCCeeEeccCC
Q 041503 29 TTKNPNRKFWKCRVCKNFQWAEDR 52 (99)
Q Consensus 29 t~~NPgR~Fy~C~~C~fF~W~De~ 52 (99)
|+-||=++-|.||.|+|+.|.++.
T Consensus 494 TeVDPl~phy~c~~c~~~ef~~~~ 517 (1041)
T 3f2b_A 494 TEVNPLPPHYVCPNCKHSEFFNDG 517 (1041)
T ss_dssp CSCCCSCSEEECTTTCCEEECCSS
T ss_pred CCcCCCcccccCcccccccccccc
Confidence 778999999999999999997643
No 141
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=49.60 E-value=36 Score=19.74 Aligned_cols=19 Identities=32% Similarity=0.237 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041503 68 KLTLEIERLSDKFRLLHKE 86 (99)
Q Consensus 68 e~~~ei~~l~~k~~~l~~E 86 (99)
++..+.+.|..++..|..|
T Consensus 26 ~Le~~~~~L~~~n~~L~~~ 44 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433
No 142
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=49.11 E-value=2.9 Score=22.56 Aligned_cols=33 Identities=24% Similarity=0.591 Sum_probs=18.7
Q ss_pred ccccCcccccee---eeecCCCCCCcceeeCCCCCe
Q 041503 13 QVCNECGGQIEL---FTSHTTKNPNRKFWKCRVCKN 45 (99)
Q Consensus 13 ~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C~f 45 (99)
..|+.||..... +........+.+.|.|+.|+.
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 38 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNR 38 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCC
T ss_pred CcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCC
Confidence 468888864321 111111234556799998873
No 143
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.11 E-value=27 Score=19.51 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLLHKE 86 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~E 86 (99)
+.+..++|..|+.+...|+.|
T Consensus 10 LeEtkeQi~~l~~kl~~LkeE 30 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEE 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346666788888777777554
No 144
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=49.08 E-value=5.5 Score=25.55 Aligned_cols=24 Identities=38% Similarity=0.410 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 63 VEEVRKLTLEIERLSDKFRLLHKE 86 (99)
Q Consensus 63 ~~ei~e~~~ei~~l~~k~~~l~~E 86 (99)
+.|++-|++.|.+|..++..|+.|
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~E 37 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERE 37 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777788888777777444
No 145
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=49.04 E-value=7.4 Score=28.06 Aligned_cols=23 Identities=30% Similarity=0.783 Sum_probs=15.5
Q ss_pred cccccCccccceeeeecCCCCCCcceeeCCCCC
Q 041503 12 LQVCNECGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
..+|+.||.... . . .+++||.|+
T Consensus 171 ~~~C~~CG~i~~---g---~----~p~~CP~C~ 193 (202)
T 1yuz_A 171 FHLCPICGYIHK---G---E----DFEKCPICF 193 (202)
T ss_dssp EEECSSSCCEEE---S---S----CCSBCTTTC
T ss_pred EEEECCCCCEEc---C---c----CCCCCCCCC
Confidence 478999997543 1 2 238899886
No 146
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=49.02 E-value=31 Score=21.51 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El 87 (99)
|+.++...|+.|.+++..|..+|
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444
No 147
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=48.80 E-value=11 Score=28.92 Aligned_cols=28 Identities=21% Similarity=0.597 Sum_probs=20.1
Q ss_pred cccCccccceeeeecCCCCCCcceeeCCCCC
Q 041503 14 VCNECGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 14 ~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
.||.||.++....-. -.||.-|=||.|.
T Consensus 253 pC~~CGt~I~~~~~g---~~gRsTyfCp~~~ 280 (287)
T 3w0f_A 253 NCDQCHSKITVCRFG---ENSRMTYFCPHCQ 280 (287)
T ss_dssp BCTTTCCBCEEECSS---TTCCCEEECTTTS
T ss_pred CCCCCCCEEEEEEec---CCCCCEEECCCcc
Confidence 799999866543222 1469999999885
No 148
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=48.76 E-value=48 Score=20.84 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 57 EKIDLLVEEVRKLTLEIERLSDKFRLLHKELEHT 90 (99)
Q Consensus 57 ~k~~~l~~ei~e~~~ei~~l~~k~~~l~~El~~~ 90 (99)
.+.+.+..+|..+...+..+..++..++..|...
T Consensus 77 ~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677788889888999998888888887653
No 149
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.73 E-value=3.3 Score=21.23 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=15.2
Q ss_pred ccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 13 QVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 13 ~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
..|+.||+.... +........|-+.|.|+.|
T Consensus 13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ytn_A 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG 46 (46)
T ss_dssp CBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred eECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence 678888863221 1111112334456777654
No 150
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.63 E-value=5.3 Score=20.36 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=14.6
Q ss_pred ccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 13 QVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 13 ~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
..|+.||+.... +........|-+.|.|+.|
T Consensus 13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2em7_A 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG 46 (46)
T ss_dssp EECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred ccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 677778763221 1111112334455777654
No 151
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=48.29 E-value=42 Score=21.61 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLL 83 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l 83 (99)
+|.+++.+|..|+..+..|
T Consensus 46 ~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 46 EIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554
No 152
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=47.91 E-value=53 Score=21.13 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
|.++|-.+|+.++..+..|++|.++
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~ 63 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888898888888888887764
No 153
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.83 E-value=9.4 Score=19.46 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=14.8
Q ss_pred cccccCcccccee---eeecCCCCCCcceeeCC
Q 041503 12 LQVCNECGGQIEL---FTSHTTKNPNRKFWKCR 41 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~ 41 (99)
...|+.||+.... +........+.+.|.|+
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eon_A 12 PYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred ccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence 3678888864222 11122223344557775
No 154
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.82 E-value=3.2 Score=21.25 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=14.9
Q ss_pred ccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 13 QVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 13 ~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
..|+.||+.... +........|-+.|+|+.|
T Consensus 13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ytg_A 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG 46 (46)
T ss_dssp EECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred eECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 677778763221 1111112334455777654
No 155
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.71 E-value=3.6 Score=21.06 Aligned_cols=8 Identities=50% Similarity=1.244 Sum_probs=5.4
Q ss_pred ccccCccc
Q 041503 13 QVCNECGG 20 (99)
Q Consensus 13 ~~Cp~Cg~ 20 (99)
..|+.||+
T Consensus 13 ~~C~~C~k 20 (46)
T 2eq0_A 13 YKCHECGK 20 (46)
T ss_dssp EECTTTCC
T ss_pred eECCCCCc
Confidence 56777775
No 156
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=47.54 E-value=2 Score=22.89 Aligned_cols=32 Identities=22% Similarity=0.682 Sum_probs=17.6
Q ss_pred ccccCcccccee---eeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQIEL---FTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C~ 44 (99)
..|+.||..... +........+.+.|.|+.|+
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~ 36 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCN 36 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSS
T ss_pred CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCC
Confidence 358888864221 11111123455679999886
No 157
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=47.30 E-value=3.1 Score=21.23 Aligned_cols=8 Identities=25% Similarity=0.833 Sum_probs=5.5
Q ss_pred ccccCccc
Q 041503 13 QVCNECGG 20 (99)
Q Consensus 13 ~~Cp~Cg~ 20 (99)
..|+.||+
T Consensus 13 ~~C~~C~k 20 (46)
T 2el4_A 13 YGCSQCAK 20 (46)
T ss_dssp EECSSSSC
T ss_pred eECCCCCc
Confidence 56777775
No 158
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=47.12 E-value=2.8 Score=21.43 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=14.4
Q ss_pred ccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 13 QVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 13 ~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
..|+.||+.... +........|.+.|+|+.|
T Consensus 13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2em9_A 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG 46 (46)
T ss_dssp EECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred eECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence 667777753211 1111112334455777654
No 159
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=46.81 E-value=32 Score=28.21 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 61 LLVEEVRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 61 ~l~~ei~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
.|.+++++++.+|+.|.++..+++.+|..
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555443
No 160
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=46.74 E-value=33 Score=27.17 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHKELEHT 90 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~El~~~ 90 (99)
+.|.++++++..+|+.+.++..++..+|...
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777776666666666543
No 161
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.51 E-value=13 Score=22.43 Aligned_cols=13 Identities=0% Similarity=-0.289 Sum_probs=7.6
Q ss_pred CCCcceeeCCCCC
Q 041503 32 NPNRKFWKCRVCK 44 (99)
Q Consensus 32 NPgR~Fy~C~~C~ 44 (99)
...++||+|+.|+
T Consensus 45 ~~~~~~~~C~~C~ 57 (115)
T 2dmi_A 45 YRDDNHETDNNNP 57 (115)
T ss_dssp CBCSCCCCCCCCC
T ss_pred cccCCCccCCCCC
Confidence 3445666677554
No 162
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=46.25 E-value=30 Score=21.77 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 041503 62 LVEEVRKLTLEIERLS 77 (99)
Q Consensus 62 l~~ei~e~~~ei~~l~ 77 (99)
-.+||++++.+|+.|+
T Consensus 19 a~sEI~EID~Ki~nL~ 34 (72)
T 2xu6_A 19 TMSEIRDIEVEVENLR 34 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3459999999999997
No 163
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=45.90 E-value=13 Score=26.00 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=22.2
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEec
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWA 49 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~ 49 (99)
.+||.||...+.....++.-+.+....||.|+--...
T Consensus 79 ~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~ 115 (166)
T 3ir9_A 79 TKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEV 115 (166)
T ss_dssp EEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEE
T ss_pred EECCCCCceeEEEeecChhhcccccccccccCccchh
Confidence 6899999755544433333244556679999854443
No 164
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.86 E-value=7.3 Score=19.84 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=15.1
Q ss_pred ccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 13 QVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 13 ~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
..|+.||+.... +........|.+.|.|+.|
T Consensus 13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c 46 (46)
T 2emf_A 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG 46 (46)
T ss_dssp EECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred eECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 678788864221 1111112234456777654
No 165
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=45.85 E-value=56 Score=20.82 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
|.-+..|+++|+.++..|..|.+.
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555777777777776665544
No 166
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=45.27 E-value=4.3 Score=27.15 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=31.5
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeE
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQ 47 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~ 47 (99)
..|.-|+......+|+..-+-|=-|-+||+|.-..
T Consensus 14 FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~H 48 (100)
T 2e2z_A 14 FTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRH 48 (100)
T ss_dssp EEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEE
T ss_pred EEccCCCCcchhhcCHHHhhCCEEEEEcCCCccce
Confidence 78989999999999999999999999999998543
No 167
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=45.22 E-value=13 Score=30.01 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=19.7
Q ss_pred ccccCccccceeeeecCCCCCC--c---ceeeCCCCCe
Q 041503 13 QVCNECGGQIELFTSHTTKNPN--R---KFWKCRVCKN 45 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPg--R---~Fy~C~~C~f 45 (99)
..||.||.....+.--+ +=|. . --+.|++|+|
T Consensus 221 s~Cp~C~~~~~t~~~~~-~IP~F~eViims~~C~~CGy 257 (404)
T 2qkd_A 221 TNCPECNAPAQTNMKLV-QIPHFKEVIIMATNCENCGH 257 (404)
T ss_dssp ECCTTTCCTTCEEEEEE-CCTTSCCEEEEEEECSSSCC
T ss_pred ccCccCCCccEEEEEEE-eCCCCCcEEEEEEECCCCCC
Confidence 68999998776655333 3342 1 1266888875
No 168
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=44.94 E-value=21 Score=27.20 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041503 68 KLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 68 e~~~ei~~l~~k~~~l~~El~~ 89 (99)
.+..+++++++++..|+.||++
T Consensus 72 ~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 72 KLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777765
No 169
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.77 E-value=2.7 Score=21.47 Aligned_cols=9 Identities=44% Similarity=1.091 Sum_probs=6.0
Q ss_pred ccccCcccc
Q 041503 13 QVCNECGGQ 21 (99)
Q Consensus 13 ~~Cp~Cg~~ 21 (99)
..|+.||..
T Consensus 13 ~~C~~C~k~ 21 (46)
T 2eme_A 13 YVCDYCGKA 21 (46)
T ss_dssp EECSSSCCE
T ss_pred eECCCCChh
Confidence 667777753
No 170
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.59 E-value=26 Score=21.24 Aligned_cols=36 Identities=25% Similarity=0.510 Sum_probs=26.3
Q ss_pred CCCCCCCCCCcccccCccccceeeeecCCCCCCcceeeCCCCCeeEec
Q 041503 2 SSSTNESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWA 49 (99)
Q Consensus 2 SSSs~~~~~~~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~ 49 (99)
|+.+++.+...+.| .|+.+- |++.....|-.|. .|.
T Consensus 2 ~~~~~~~~~~~~~C-~C~~~~---------d~~~~MIqCd~C~--~Wf 37 (79)
T 1wep_A 2 SSGSSGMALVPVYC-LCRQPY---------NVNHFMIECGLCQ--DWF 37 (79)
T ss_dssp CSCCCCCCCCCCCS-TTSCSC---------CSSSCEEEBTTTC--CEE
T ss_pred CCCccCccCCccEE-EcCCcc---------CCCCceEEcCCCC--CcE
Confidence 56677777777999 998763 5567777888887 553
No 171
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.49 E-value=10 Score=22.02 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=12.6
Q ss_pred CCCCCCcccccCccccce
Q 041503 6 NESRNSLQVCNECGGQIE 23 (99)
Q Consensus 6 ~~~~~~~~~Cp~Cg~~~~ 23 (99)
.........|+.|++++.
T Consensus 5 ~~~~~~~~~C~~C~~~I~ 22 (77)
T 1g47_A 5 MANALASATCERCKGGFA 22 (77)
T ss_dssp CCSCCCCCBCSSSCCBCC
T ss_pred hccCCCCCCchhcCCccC
Confidence 334445589999998763
No 172
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.47 E-value=6.1 Score=21.67 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=15.2
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
..|+.||........-.. .+.|.|+.|+
T Consensus 19 ~~C~~C~k~f~~~~~l~~----~~~~~C~~C~ 46 (73)
T 2ctu_A 19 QKCSKCGIIFIRRSTLSR----RKTPMCEKCR 46 (73)
T ss_dssp EECSSSCCEEECCCCCCC----SSSCCCHHHH
T ss_pred eeCCcccchhCCHHHhCc----CCCCCCCCCC
Confidence 678888864332222111 4557787554
No 173
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.43 E-value=8.3 Score=19.61 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=6.6
Q ss_pred cccccCcccc
Q 041503 12 LQVCNECGGQ 21 (99)
Q Consensus 12 ~~~Cp~Cg~~ 21 (99)
...|+.||+.
T Consensus 12 ~~~C~~C~k~ 21 (46)
T 2enh_A 12 PYECDVCRKA 21 (46)
T ss_dssp SCBCTTTCCB
T ss_pred CcCCCCcCch
Confidence 3677777763
No 174
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=44.33 E-value=45 Score=21.20 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLL 83 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l 83 (99)
+|.+++++|..|+..++.|
T Consensus 42 ~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 42 EIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555556666666555555
No 175
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=44.25 E-value=54 Score=24.96 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLL 83 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l 83 (99)
++.+.+++++|++++..|
T Consensus 187 ie~L~~~~~~L~eEi~~L 204 (315)
T 2ve7_A 187 LESLEAKNRALNEQIARL 204 (315)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444333333
No 176
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=44.18 E-value=8.2 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.673 Sum_probs=17.8
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeE
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQ 47 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~ 47 (99)
-+|+.||....+. ...+ -+||.|++-+
T Consensus 29 Y~C~~CG~~~e~~----~~d~----irCp~CG~RI 55 (70)
T 1twf_L 29 YICAECSSKLSLS----RTDA----VRCKDCGHRI 55 (70)
T ss_dssp EECSSSCCEECCC----TTST----TCCSSSCCCC
T ss_pred EECCCCCCcceeC----CCCC----ccCCCCCceE
Confidence 6899999876654 1122 3699888733
No 177
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.93 E-value=58 Score=25.10 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
|.|+..||..|+.+++.++-|+++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445444444444443
No 178
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=43.80 E-value=56 Score=20.21 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 58 KIDLLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 58 k~~~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
+.+.+..+|..+...+..++.++..++..|.
T Consensus 73 ~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 73 KLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677888888888888888888877664
No 179
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=43.43 E-value=7.6 Score=22.63 Aligned_cols=33 Identities=24% Similarity=0.607 Sum_probs=17.7
Q ss_pred cccccCccccce---eeeecCCCCCCcceeeCCCCC
Q 041503 12 LQVCNECGGQIE---LFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 12 ~~~Cp~Cg~~~~---~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
...|+.|+.... .+........+.+.|.|+.|+
T Consensus 8 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~ 43 (96)
T 2dmd_A 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCD 43 (96)
T ss_dssp CCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSC
T ss_pred CeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCC
Confidence 367888886322 111222233445667888776
No 180
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=42.77 E-value=62 Score=21.16 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 59 IDLLVEEVRKLTLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 59 ~~~l~~ei~e~~~ei~~l~~k~~~l~~El 87 (99)
...|.+||.+|..+-..|-..++.+++.|
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l 36 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQL 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666655544444444444443333
No 181
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=42.75 E-value=50 Score=25.45 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 61 LLVEEVRKLTLEIERLSDKFRLLHKELEHTQL 92 (99)
Q Consensus 61 ~l~~ei~e~~~ei~~l~~k~~~l~~El~~~~~ 92 (99)
.|+.++.+....|++|..++.+|..+|++..-
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 433 SLDAEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555445677777777777777766543
No 182
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=42.66 E-value=32 Score=22.38 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLH 84 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~ 84 (99)
..|+++++++..+++.+++++..|+
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467788888888888888888775
No 183
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=42.22 E-value=3.9 Score=20.91 Aligned_cols=31 Identities=16% Similarity=0.106 Sum_probs=14.7
Q ss_pred ccccCcccccee---eeecCCCCCCcceeeCCCC
Q 041503 13 QVCNECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 13 ~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
..|+.||+.... +........|-+.|.|+.|
T Consensus 13 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2em0_A 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG 46 (46)
T ss_dssp CCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred eECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence 678788764221 1111112234455777654
No 184
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=42.18 E-value=50 Score=25.10 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041503 61 LLVEEVRKLTLEIERLSD 78 (99)
Q Consensus 61 ~l~~ei~e~~~ei~~l~~ 78 (99)
...+||++++.+|++|+.
T Consensus 174 ma~sEI~EID~KI~~L~~ 191 (242)
T 3uux_B 174 STLSEIRDIEVEVENLRQ 191 (242)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345589999999998873
No 185
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=42.02 E-value=17 Score=20.49 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCccccc--Cccc
Q 041503 1 MSSSTNESRNSLQVCN--ECGG 20 (99)
Q Consensus 1 mSSSs~~~~~~~~~Cp--~Cg~ 20 (99)
||...+....+...|| .||.
T Consensus 3 m~~~~~~~~~GDW~C~~~~C~~ 24 (45)
T 1n0z_A 3 MSTKNFRVSDGDWICPDKKCGN 24 (45)
T ss_dssp SCCSSCSSCSSSCBCSSTTTCC
T ss_pred cccccCCCCCCCcCCCCCCCCC
Confidence 7777777778889998 6875
No 186
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=41.99 E-value=36 Score=24.72 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELEHTQLRSK 95 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~~~~~~~~ 95 (99)
-+.+|..++.+|+.+++.|+.|..+-.-+++
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3557778888888888888888877655543
No 187
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=41.59 E-value=64 Score=24.00 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
|.++|-.+|+.++..|..|++|++
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~ 139 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENK 139 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544443
No 188
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=41.37 E-value=41 Score=21.17 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El~ 88 (99)
+++....-..|..+++.|+.||.
T Consensus 58 vD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 58 VDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667777777777764
No 189
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.33 E-value=11 Score=19.10 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=16.3
Q ss_pred Cccccc--Ccccccee---eeecCCCCCCcceeeCCCC
Q 041503 11 SLQVCN--ECGGQIEL---FTSHTTKNPNRKFWKCRVC 43 (99)
Q Consensus 11 ~~~~Cp--~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C 43 (99)
....|+ .||+.... +........|.+.|+|+.|
T Consensus 11 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 48 (48)
T 2ent_A 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG 48 (48)
T ss_dssp CCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred CCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence 346785 68864221 1111222345556787655
No 190
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=41.31 E-value=14 Score=25.99 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=25.0
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEecc
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAE 50 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~D 50 (99)
+.||.|+.+=..++.. | +--|-+|..|+...=+|
T Consensus 105 VlC~~C~sPdT~L~k~---~-r~~~l~C~ACGa~~~V~ 138 (148)
T 2d74_B 105 VICPVCGSPDTKIIKR---D-RFHFLKCEACGAETPIQ 138 (148)
T ss_dssp SSCSSSCCTTCCCCBS---S-SSBCCCCSSSCCCCCCC
T ss_pred EECCCCCCcCcEEEEe---C-CEEEEEecCCCCCcccc
Confidence 8999999976666642 2 56788999998765444
No 191
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=41.29 E-value=52 Score=19.13 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041503 68 KLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 68 e~~~ei~~l~~k~~~l~~El~~ 89 (99)
.|...+.+-++++.+|+.||++
T Consensus 27 rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 27 KLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777777665
No 192
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=41.11 E-value=48 Score=22.16 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKE 86 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~E 86 (99)
+|.++..++..|+.+++.|.+|
T Consensus 19 ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777666665443
No 193
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=41.08 E-value=34 Score=27.47 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHKELEHT 90 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~El~~~ 90 (99)
..|.++++++..+|+.|.++..++..+|...
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666665443
No 194
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=40.73 E-value=68 Score=20.33 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 63 VEEVRKLTLEIERLSDKFRLLHKELEHTQ 91 (99)
Q Consensus 63 ~~ei~e~~~ei~~l~~k~~~l~~El~~~~ 91 (99)
+.+|+.+-.++...+.++..++.||..+-
T Consensus 43 EKTIDDLEDkL~~eKEK~k~i~eeLDqTL 71 (77)
T 3mtu_E 43 VSEYNDLEEKVAHAKEENLNMHQMLDQTL 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33577777777777778888888876553
No 195
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=40.66 E-value=61 Score=19.79 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 68 KLTLEIERLSDKFRLLHKELEHTQLRS 94 (99)
Q Consensus 68 e~~~ei~~l~~k~~~l~~El~~~~~~~ 94 (99)
+...++..|+.+|+.+..||++..-++
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555678888889999988888765443
No 196
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=40.62 E-value=7 Score=28.21 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=2.4
Q ss_pred CCCCCccee
Q 041503 30 TKNPNRKFW 38 (99)
Q Consensus 30 ~~NPgR~Fy 38 (99)
..||+|+||
T Consensus 224 G~~~~r~f~ 232 (233)
T 4efa_E 224 GPSKTRKFF 232 (233)
T ss_dssp CCC------
T ss_pred CcCCCCCCC
Confidence 589999998
No 197
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=39.80 E-value=52 Score=18.69 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHKE 86 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~E 86 (99)
..|+..++++.....+|+.++..|+-|
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666667777777777777777654
No 198
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.79 E-value=20 Score=21.70 Aligned_cols=29 Identities=21% Similarity=0.551 Sum_probs=18.3
Q ss_pred cccccCccccce--eeeecCCCCCCcce----eeCCCCC
Q 041503 12 LQVCNECGGQIE--LFTSHTTKNPNRKF----WKCRVCK 44 (99)
Q Consensus 12 ~~~Cp~Cg~~~~--~~tS~t~~NPgR~F----y~C~~C~ 44 (99)
...|+.|+.++. .++. -.|+.| |+|..|+
T Consensus 15 ~~~C~~C~~~I~~~~~v~----a~~~~~H~~CF~C~~C~ 49 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL----ANQQVFHISCFRCSYCN 49 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE----CSSSEEETTTCBCTTTC
T ss_pred CCcCccCCCccCCceeEE----ECCCEECCCCCeeCCCC
Confidence 489999998764 2232 235555 6777664
No 199
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.58 E-value=1.4 Score=26.93 Aligned_cols=32 Identities=22% Similarity=0.535 Sum_probs=17.2
Q ss_pred ccccCccccce-e---eeecCCCCCC-cceeeCCCCC
Q 041503 13 QVCNECGGQIE-L---FTSHTTKNPN-RKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~-~---~tS~t~~NPg-R~Fy~C~~C~ 44 (99)
..|+.||+... . +........+ .+.|.|+.|+
T Consensus 25 ~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~ 61 (98)
T 2gqj_A 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCR 61 (98)
T ss_dssp CCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSC
T ss_pred cCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCC
Confidence 67888887543 1 1111111123 4678888876
No 200
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=39.08 E-value=91 Score=21.33 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
..|+.||..++.++.+..++++.|+.+-+
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 34445555555544444444444444433
No 201
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=39.04 E-value=64 Score=21.61 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 57 EKIDLLVEEVRKLTLEIERLSDKFRLLHKELEHTQ 91 (99)
Q Consensus 57 ~k~~~l~~ei~e~~~ei~~l~~k~~~l~~El~~~~ 91 (99)
.|++.|...++.+...+..+++++..+...|.+-.
T Consensus 105 ~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 105 KRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777888888888888888877766543
No 202
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=38.78 E-value=13 Score=25.05 Aligned_cols=14 Identities=36% Similarity=0.748 Sum_probs=11.1
Q ss_pred cceeeCCCCCeeEe
Q 041503 35 RKFWKCRVCKNFQW 48 (99)
Q Consensus 35 R~Fy~C~~C~fF~W 48 (99)
-.||+|+.|+...-
T Consensus 5 ~~fYkC~~CGnive 18 (126)
T 1vzi_A 5 LQVYKCEVCGNIVE 18 (126)
T ss_dssp TCEEECTTTCCEEE
T ss_pred CcEEEcCCCCeEEE
Confidence 47999999986654
No 203
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=38.55 E-value=89 Score=21.03 Aligned_cols=58 Identities=14% Similarity=0.335 Sum_probs=31.9
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEec--cCCcc--chhhHHHHHHHHHHHHHHHHHHHHHH
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWA--EDRKF--SNEKIDLLVEEVRKLTLEIERLSDKF 80 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~--De~~~--~~~k~~~l~~ei~e~~~ei~~l~~k~ 80 (99)
.+||.||..-.+-+..|.+ | .+|..-. |..+. --.++++++.|+-+++..++-.-..+
T Consensus 53 akcprcgaegsvsivetkn--g--------ykylvirhpdggthtvpktdisailkelcevkkdleyvlkry 114 (131)
T 2x5c_A 53 AKCPRCGAEGSVSIVETKN--G--------YKYLVIRHPDGGTHTVPKTDISAILKELCEVKKDLEYVLKRY 114 (131)
T ss_dssp EECTTTSCEEEEEEEECTT--S--------CEEEEEECTTSCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCccceEEEEecC--C--------cEEEEEECCCCCccccccccHHHHHHHHHHHHHhHHHHHHHH
Confidence 6899999866666655532 1 2222222 22232 33456777777776666555544333
No 204
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.41 E-value=29 Score=20.66 Aligned_cols=31 Identities=19% Similarity=0.612 Sum_probs=19.6
Q ss_pred CCcccccCcccccee--eeecCCCCCCcce----eeCCCCC
Q 041503 10 NSLQVCNECGGQIEL--FTSHTTKNPNRKF----WKCRVCK 44 (99)
Q Consensus 10 ~~~~~Cp~Cg~~~~~--~tS~t~~NPgR~F----y~C~~C~ 44 (99)
.+..+|+.|++.+.. ++. =.|+.| |+|..|+
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~----a~~~~wH~~CF~C~~C~ 49 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC----VNGHFFHRSCFRCHTCE 49 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC----BTTBCCBTTTCBCSSSC
T ss_pred CCCCCCcccCCCcccceEEE----ECCCeeCCCcCEEcCCC
Confidence 445899999997631 222 135566 6787775
No 205
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=38.21 E-value=74 Score=20.36 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
++++.......|...++.|++++++
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555556555555
No 206
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=38.09 E-value=85 Score=20.70 Aligned_cols=17 Identities=41% Similarity=0.632 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041503 72 EIERLSDKFRLLHKELE 88 (99)
Q Consensus 72 ei~~l~~k~~~l~~El~ 88 (99)
|++.|+.++.+|+..|+
T Consensus 19 e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 19 EIEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 207
>3mly_P HIV-1 GP120 third variable region (V3) crown; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.70A {Human immunodeficiency virus 1} PDB: 2b1h_P 3mlu_P 3ujj_P
Probab=38.02 E-value=9.7 Score=18.08 Aligned_cols=8 Identities=25% Similarity=0.833 Sum_probs=6.7
Q ss_pred CCCcceee
Q 041503 32 NPNRKFWK 39 (99)
Q Consensus 32 NPgR~Fy~ 39 (99)
-|||.||.
T Consensus 10 GpG~~fy~ 17 (23)
T 3mly_P 10 RPRQAFYA 17 (26)
T ss_pred cCCeeEEe
Confidence 58999995
No 208
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=37.90 E-value=58 Score=18.75 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 61 LLVEEVRKLTLEIERLSDKFRLLHKELEHT 90 (99)
Q Consensus 61 ~l~~ei~e~~~ei~~l~~k~~~l~~El~~~ 90 (99)
-|+.+|+.+-.++..-+.++..+..||..+
T Consensus 16 KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 16 RLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345566666666666666777777776654
No 209
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=37.66 E-value=74 Score=20.91 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 041503 73 IERLSDKFRLLHKEL 87 (99)
Q Consensus 73 i~~l~~k~~~l~~El 87 (99)
.-.|..+++.|+.||
T Consensus 85 r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 85 RLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555555544
No 210
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=37.65 E-value=46 Score=17.46 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 041503 62 LVEEVRKLTLEIERLS 77 (99)
Q Consensus 62 l~~ei~e~~~ei~~l~ 77 (99)
|++|-.+++...++|-
T Consensus 11 leaenkqlkakveell 26 (31)
T 1p9i_A 11 LEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 211
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=37.64 E-value=79 Score=22.42 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041503 72 EIERLSDKFRLLHKELEHTQ 91 (99)
Q Consensus 72 ei~~l~~k~~~l~~El~~~~ 91 (99)
.|+.|.+++.+|+.+|...+
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 212
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=37.61 E-value=38 Score=27.78 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 62 LVEEVRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 62 l~~ei~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
|.+|++++..+|+.|.++..++..+|..
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555444443
No 213
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.38 E-value=3.2 Score=21.20 Aligned_cols=9 Identities=56% Similarity=1.147 Sum_probs=6.0
Q ss_pred ccccCcccc
Q 041503 13 QVCNECGGQ 21 (99)
Q Consensus 13 ~~Cp~Cg~~ 21 (99)
..|+.||+.
T Consensus 13 ~~C~~C~k~ 21 (46)
T 2eoe_A 13 YKCNECGKV 21 (46)
T ss_dssp SEETTTTEE
T ss_pred eECCCcChh
Confidence 667777753
No 214
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.32 E-value=22 Score=20.92 Aligned_cols=18 Identities=17% Similarity=0.589 Sum_probs=11.3
Q ss_pred CCCCCCCcccccCccccc
Q 041503 5 TNESRNSLQVCNECGGQI 22 (99)
Q Consensus 5 s~~~~~~~~~Cp~Cg~~~ 22 (99)
......+...||.|+..-
T Consensus 5 ~~~~~~~~~~CPrCn~~f 22 (49)
T 2e72_A 5 SSGQDGGRKICPRCNAQF 22 (49)
T ss_dssp SSSCCSSCCCCTTTCCCC
T ss_pred cccccCCceeCCcccccc
Confidence 334444568898888643
No 215
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=37.23 E-value=81 Score=20.17 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 68 KLTLEIERLSDKFRLLHKELEHTQLR 93 (99)
Q Consensus 68 e~~~ei~~l~~k~~~l~~El~~~~~~ 93 (99)
++..++..|+.+++.+..||++..-.
T Consensus 41 ~~E~Ei~sL~kk~~~lE~eld~~ee~ 66 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVTEDSRDQVLEE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567888888888888888765543
No 216
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=37.15 E-value=12 Score=20.36 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041503 72 EIERLSDKFRLLHKELEH 89 (99)
Q Consensus 72 ei~~l~~k~~~l~~El~~ 89 (99)
+++.++.||+.|+.|+++
T Consensus 5 ~i~avKkKiq~lq~q~d~ 22 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYH 22 (37)
T ss_dssp -CHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555666666655543
No 217
>3uji_P Envelope glycoprotein GP160; IG domains, antibody FAB, antigen binding, the third variabl of HIV-1 GP120, immune system; HET: NAG FUC; 1.60A {Hiv-1 M} PDB: 3mlw_P 1f58_P 3mlx_P* 1ai1_P 1acy_P 2b1a_P 3mlt_P
Probab=37.12 E-value=10 Score=18.00 Aligned_cols=9 Identities=33% Similarity=0.807 Sum_probs=7.0
Q ss_pred CCCCcceee
Q 041503 31 KNPNRKFWK 39 (99)
Q Consensus 31 ~NPgR~Fy~ 39 (99)
--|||.||.
T Consensus 9 iGpG~~fy~ 17 (23)
T 3uji_P 9 IGPGRAFYT 17 (26)
T ss_pred ecCCeeEEe
Confidence 358999995
No 218
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=36.91 E-value=61 Score=21.82 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041503 63 VEEVRKLTLEIERLSDKFRLLH 84 (99)
Q Consensus 63 ~~ei~e~~~ei~~l~~k~~~l~ 84 (99)
..+.++|..+|..++.+++.++
T Consensus 6 ~~~~~~L~~~i~~l~~~L~~lk 27 (122)
T 3viq_A 6 LSRRLKLEKEVRNLQEQLITAE 27 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 219
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=36.78 E-value=45 Score=20.55 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
|++++--|-.+|+++.-.++.||.
T Consensus 4 Elr~iLqERNELKa~vf~lqeEL~ 27 (65)
T 1yhn_B 4 EFEQILQERNELKAKVFLLKEELA 27 (65)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666664
No 220
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=36.76 E-value=46 Score=21.41 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERL 76 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l 76 (99)
+.|.+++.++..+|..+
T Consensus 11 ~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 11 HLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 221
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=36.62 E-value=1e+02 Score=22.28 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=22.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 55 SNEKIDLLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 55 ~~~k~~~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
...++..|.+++..+..+.++|+.......+.||
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666777777777777776666666665
No 222
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=36.61 E-value=9.3 Score=27.10 Aligned_cols=24 Identities=33% Similarity=0.668 Sum_probs=15.3
Q ss_pred cccccCccccceeeeecCCCCCCcceeeCCCCC
Q 041503 12 LQVCNECGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
..+|+.||.... ...-|. +||.|+
T Consensus 155 ~~~C~~CG~~~~-----g~~~p~----~CP~C~ 178 (191)
T 1lko_A 155 KWRCRNCGYVHE-----GTGAPE----LCPACA 178 (191)
T ss_dssp EEEETTTCCEEE-----EEECCS----BCTTTC
T ss_pred eEEECCCCCEee-----CCCCCC----CCCCCc
Confidence 377999997543 113344 799776
No 223
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=36.47 E-value=21 Score=16.81 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=9.1
Q ss_pred CCcceeeCCCCC
Q 041503 33 PNRKFWKCRVCK 44 (99)
Q Consensus 33 PgR~Fy~C~~C~ 44 (99)
.|.+.|+|+.|+
T Consensus 7 ~~~k~~~C~~C~ 18 (37)
T 1p7a_A 7 TGIKPFQCPDCD 18 (37)
T ss_dssp CCSSSBCCTTTC
T ss_pred CCCCCccCCCCC
Confidence 355679999886
No 224
>3mlz_P HIV-1 GP120 third variable region (V3) crown; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 2.99A {Human immunodeficiency virus 1}
Probab=36.37 E-value=10 Score=18.36 Aligned_cols=8 Identities=38% Similarity=0.974 Sum_probs=6.6
Q ss_pred CCCcceee
Q 041503 32 NPNRKFWK 39 (99)
Q Consensus 32 NPgR~Fy~ 39 (99)
-|||.||.
T Consensus 11 GpG~~fy~ 18 (25)
T 3mlz_P 11 GPGRAFYA 18 (26)
T ss_dssp CTTCCCCC
T ss_pred cCCeeEEE
Confidence 58999985
No 225
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.18 E-value=8.6 Score=23.12 Aligned_cols=7 Identities=43% Similarity=1.270 Sum_probs=3.6
Q ss_pred ccccCccc
Q 041503 13 QVCNECGG 20 (99)
Q Consensus 13 ~~Cp~Cg~ 20 (99)
..| .||.
T Consensus 11 ~~C-~C~~ 17 (110)
T 2csh_A 11 YPC-QCGK 17 (110)
T ss_dssp EEC-TTSC
T ss_pred Eec-cCCC
Confidence 455 5554
No 226
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.74 E-value=35 Score=20.46 Aligned_cols=31 Identities=19% Similarity=0.572 Sum_probs=18.8
Q ss_pred CcccccCccccceeeeecCCCCCCcce----eeCCCCC
Q 041503 11 SLQVCNECGGQIELFTSHTTKNPNRKF----WKCRVCK 44 (99)
Q Consensus 11 ~~~~Cp~Cg~~~~~~tS~t~~NPgR~F----y~C~~C~ 44 (99)
...+|..|++.+.-..... -|+.| |+|..|+
T Consensus 24 ~~~~C~~C~~~I~~~~~~a---~~~~~H~~CF~C~~C~ 58 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKA---RDKYRHPECFVCADCN 58 (89)
T ss_dssp SCCBCTTTCCBCCSCCEES---SSCEECTTTCCCSSSC
T ss_pred cCCCcccCCCEecccEEEE---CCceECccCCEecCCC
Confidence 3489999998765433221 34555 5777663
No 227
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=35.58 E-value=12 Score=25.46 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=6.3
Q ss_pred ccccCccccce
Q 041503 13 QVCNECGGQIE 23 (99)
Q Consensus 13 ~~Cp~Cg~~~~ 23 (99)
..|+.||..-.
T Consensus 133 y~C~~Cg~~~~ 143 (165)
T 2lcq_A 133 YVCIGCGRKFS 143 (165)
T ss_dssp EEESSSCCEES
T ss_pred EECCCCCCccc
Confidence 56666665443
No 228
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.43 E-value=16 Score=17.64 Aligned_cols=12 Identities=17% Similarity=0.744 Sum_probs=9.3
Q ss_pred CCcceeeCCCCC
Q 041503 33 PNRKFWKCRVCK 44 (99)
Q Consensus 33 PgR~Fy~C~~C~ 44 (99)
.|.+.|+|+.|+
T Consensus 5 ~~~k~~~C~~C~ 16 (37)
T 2elm_A 5 SSGHLYYCSQCH 16 (37)
T ss_dssp SSSCEEECSSSS
T ss_pred CCCcCeECCCCC
Confidence 356779999886
No 229
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.29 E-value=69 Score=18.85 Aligned_cols=22 Identities=27% Similarity=0.210 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El 87 (99)
+.++..+.+.|..++..|..++
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i 46 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERA 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 230
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=35.03 E-value=6.3 Score=22.97 Aligned_cols=32 Identities=25% Similarity=0.609 Sum_probs=15.9
Q ss_pred ccccCcccccee---eeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQIEL---FTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~---~tS~t~~NPgR~Fy~C~~C~ 44 (99)
..|+.|+..... +........+.+.|.|+.|+
T Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~ 42 (95)
T 2yt9_A 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCG 42 (95)
T ss_dssp EECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSC
T ss_pred eECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCC
Confidence 677777753221 11111123345567777775
No 231
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=34.72 E-value=39 Score=21.10 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El 87 (99)
|++++.++++|+.+--.+..+|
T Consensus 5 i~eLkkevkKL~~~A~q~kmdL 26 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDL 26 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 4555555555555444444443
No 232
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.65 E-value=1.2e+02 Score=22.27 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 041503 71 LEIERLSDKFRLL 83 (99)
Q Consensus 71 ~ei~~l~~k~~~l 83 (99)
.||+.|+.++..+
T Consensus 41 ~ei~~L~~ql~sl 53 (190)
T 4emc_A 41 TEIKQLQKQIDSL 53 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444333333
No 233
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=34.59 E-value=15 Score=25.42 Aligned_cols=31 Identities=13% Similarity=0.388 Sum_probs=19.7
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeE
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQ 47 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~ 47 (99)
+.||.|+.+=..++.. | +--|-+|..|+...
T Consensus 104 VlC~~C~sPdT~l~k~---~-r~~~l~C~ACGa~~ 134 (139)
T 3cw2_K 104 VECSTCKSLDTILKKE---K-KSWYIVCLACGAQT 134 (139)
T ss_dssp SSCCSSSSSCCCSCSS---C-STTTSSCCC-----
T ss_pred eECCCCCCcCcEEEEe---C-CeEEEEecCCCCCC
Confidence 8999999986665542 2 56788999998643
No 234
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=34.50 E-value=16 Score=25.32 Aligned_cols=31 Identities=19% Similarity=0.481 Sum_probs=23.3
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeE
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQ 47 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~ 47 (99)
+.||.|+.+=..++.. | +--|-+|..|+...
T Consensus 103 VlC~~C~sPdT~l~k~---~-r~~~l~C~ACGa~~ 133 (138)
T 1nee_A 103 VICHECNRPDTRIIRE---G-RISLLKCEACGAKA 133 (138)
T ss_dssp HHHTCCSSCSSCCEEE---T-TTTEEECSTTSCCC
T ss_pred EECCCCCCcCcEEEEc---C-CeEEEEccCCCCCc
Confidence 8999999986666642 2 66788999998643
No 235
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=34.50 E-value=59 Score=21.85 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041503 74 ERLSDKFRLLHKELEHT 90 (99)
Q Consensus 74 ~~l~~k~~~l~~El~~~ 90 (99)
..|+.++-.|+.||.+.
T Consensus 43 ~ql~~~i~~Le~eL~e~ 59 (120)
T 3i00_A 43 LQLKGHVSELEADLAEQ 59 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555554
No 236
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=34.46 E-value=67 Score=18.43 Aligned_cols=9 Identities=22% Similarity=0.346 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 041503 81 RLLHKELEH 89 (99)
Q Consensus 81 ~~l~~El~~ 89 (99)
.+++.||.+
T Consensus 33 eAi~~El~~ 41 (45)
T 1use_A 33 EAFVQELRK 41 (45)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 455555544
No 237
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.30 E-value=25 Score=16.46 Aligned_cols=12 Identities=17% Similarity=0.908 Sum_probs=9.3
Q ss_pred CCcceeeCCCCC
Q 041503 33 PNRKFWKCRVCK 44 (99)
Q Consensus 33 PgR~Fy~C~~C~ 44 (99)
.+.+.|.|+.|+
T Consensus 5 ~~~k~~~C~~C~ 16 (36)
T 2elv_A 5 SSGLLYDCHICE 16 (36)
T ss_dssp CCCCCEECSSSC
T ss_pred CCCCCeECCCCC
Confidence 456679999887
No 238
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=34.25 E-value=18 Score=26.19 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=22.1
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEeccCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAEDR 52 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~De~ 52 (99)
..||.||..+.+. ...+ | |.|..|++..|.+..
T Consensus 114 ~~Cp~Cg~g~fma--~h~d---R--~~CGkC~~t~~~~~~ 146 (189)
T 2xzm_9 114 KGCPKCGPGIFMA--KHYD---R--HYCGKCHLTLKIDXX 146 (189)
T ss_dssp EECSTTCSSCEEE--ECSS---C--EEETTTCCCBCCHHH
T ss_pred ccCCccCCCcccc--CccC---C--CccCCceeEEEeecc
Confidence 7899999765554 2211 3 379999988875443
No 239
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=34.24 E-value=19 Score=22.96 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 041503 63 VEEVRKLTLEIERL 76 (99)
Q Consensus 63 ~~ei~e~~~ei~~l 76 (99)
.++|.+++..++.|
T Consensus 7 ~~ei~eLk~~ve~l 20 (82)
T 3tq7_B 7 NQQLVDLKLTVDGL 20 (82)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444433333
No 240
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=34.18 E-value=13 Score=25.15 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=9.3
Q ss_pred CCCcceeeCCC-CCeeEec
Q 041503 32 NPNRKFWKCRV-CKNFQWA 49 (99)
Q Consensus 32 NPgR~Fy~C~~-C~fF~W~ 49 (99)
++.-.||+|+. |+...-.
T Consensus 2 ~~~~~fYkC~~~CGnivev 20 (128)
T 1y07_A 2 GRELSFFLQKESAGFFLGM 20 (128)
T ss_dssp -CCEEEECC-----CEEEE
T ss_pred CccCcEEECCCCCCCEEEE
Confidence 45678999998 9765543
No 241
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=33.96 E-value=23 Score=26.22 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041503 63 VEEVRKLTLEIERLSDKFRLL 83 (99)
Q Consensus 63 ~~ei~e~~~ei~~l~~k~~~l 83 (99)
..|.++|..|+.+|+.+...+
T Consensus 25 ~~eN~~Lk~e~~~l~~~~~~~ 45 (255)
T 2j5u_A 25 YTENQHLKERLEELAQLESEV 45 (255)
T ss_dssp -CTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555554444333
No 242
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=33.58 E-value=84 Score=22.22 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 63 VEEVRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 63 ~~ei~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
...|+.+..++..++.++..+..||+.
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~e 93 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIAL 93 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666666666666555543
No 243
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=33.34 E-value=37 Score=25.51 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=11.7
Q ss_pred ceeeCCCCCeeEeccC
Q 041503 36 KFWKCRVCKNFQWAED 51 (99)
Q Consensus 36 ~Fy~C~~C~fF~W~De 51 (99)
..+.|+.|++..-.+.
T Consensus 52 ~~~~C~~Cg~v~~~~~ 67 (416)
T 4e2x_A 52 AVGRCDSCEMVQLTEE 67 (416)
T ss_dssp EEEEETTTCCEEESSC
T ss_pred eEEECCCCCceeecCc
Confidence 4578999998776543
No 244
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=33.21 E-value=29 Score=19.80 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El 87 (99)
|.+|...+..|++.+..|...|
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 245
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=32.98 E-value=52 Score=21.12 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 62 LVEEVRKLTLEIERLSDKFRLLHK 85 (99)
Q Consensus 62 l~~ei~e~~~ei~~l~~k~~~l~~ 85 (99)
|..+|..|..++..|+.++..|+.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666666666666655543
No 246
>4ay9_A Glycoprotein hormones, alpha polypeptide; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1dz7_A 1e9j_A* 1fl7_A* 1hcn_A* 1hd4_A* 1xwd_A* 1hrp_A* 1qfw_A*
Probab=32.97 E-value=6 Score=26.08 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=21.0
Q ss_pred cccCccccceeeeecCCCCCCcceeeCCCCCeeE
Q 041503 14 VCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQ 47 (99)
Q Consensus 14 ~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~ 47 (99)
-||.|...-..+.|+ |||+-|.|-+|-|-.
T Consensus 6 gC~EC~L~~N~~FS~----~~~PiyQC~GCCFSr 35 (92)
T 4ay9_A 6 DCPECTLQENPLFSQ----PGAPILQCMGCCFSR 35 (92)
T ss_dssp CCCBSEEEECTTTCB----TTBCCEEEEEEEEEE
T ss_pred CCCccCcccCccccC----CCCceEEecceeecc
Confidence 466666555544444 799999999887754
No 247
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.70 E-value=21 Score=16.78 Aligned_cols=12 Identities=25% Similarity=0.869 Sum_probs=9.0
Q ss_pred CCcceeeCCCCC
Q 041503 33 PNRKFWKCRVCK 44 (99)
Q Consensus 33 PgR~Fy~C~~C~ 44 (99)
.+.+.|.|+.|+
T Consensus 5 ~~~k~~~C~~C~ 16 (36)
T 2els_A 5 SSGKIFTCEYCN 16 (36)
T ss_dssp SCCCCEECTTTC
T ss_pred CCCCCEECCCCC
Confidence 355679999886
No 248
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=32.54 E-value=20 Score=23.35 Aligned_cols=32 Identities=25% Similarity=0.752 Sum_probs=17.1
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEeccCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAEDR 52 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~De~ 52 (99)
..|+ |+...+.+ ..=|... |++|+-+.|+-..
T Consensus 49 FkC~-C~~Rt~sl----~r~P~~~---C~~Cg~~~wer~~ 80 (92)
T 2kwq_A 49 FKCP-CGNRTISL----DRLPKKH---CSTCGLFKWERVG 80 (92)
T ss_dssp EECT-TSCEEEES----SSSCCSC---CTTTCSCCCEEEC
T ss_pred EECC-CCCceeEe----eeCCCCC---CCCCCCCceEEee
Confidence 5663 66655444 1222222 6678888787544
No 249
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.45 E-value=20 Score=16.88 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=9.2
Q ss_pred CCcceeeCCCCC
Q 041503 33 PNRKFWKCRVCK 44 (99)
Q Consensus 33 PgR~Fy~C~~C~ 44 (99)
.+.+.|.|+.|+
T Consensus 5 ~~~k~~~C~~C~ 16 (36)
T 2elq_A 5 SSGKPFKCSLCE 16 (36)
T ss_dssp CCCCSEECSSSS
T ss_pred CCCCCccCCCCC
Confidence 456679999886
No 250
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.38 E-value=32 Score=20.13 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=18.8
Q ss_pred ccccCccccceeeeecCCCCCCcce----eeCCCCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKF----WKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~F----y~C~~C~ 44 (99)
++|+.|++++.... ..--|+.| |+|..|+
T Consensus 16 ~~C~~C~~~I~~~~---~~a~~~~~H~~CF~C~~C~ 48 (81)
T 1x6a_A 16 EFCHGCSLLMTGPF---MVAGEFKYHPECFACMSCK 48 (81)
T ss_dssp CBCTTTCCBCCSCC---BCCTTCCBCTTSCBCTTTC
T ss_pred CcCccCCCCcCceE---EEECCceeccccCCccCCC
Confidence 78999999776322 22335666 6777665
No 251
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.18 E-value=20 Score=16.71 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=9.0
Q ss_pred CCcceeeCCCCC
Q 041503 33 PNRKFWKCRVCK 44 (99)
Q Consensus 33 PgR~Fy~C~~C~ 44 (99)
.+.+.|.|+.|+
T Consensus 5 ~~~k~~~C~~C~ 16 (36)
T 2elt_A 5 SSGKPYKCPQCS 16 (36)
T ss_dssp CCCCSEECSSSS
T ss_pred CCCCCCCCCCCC
Confidence 345679999886
No 252
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=32.10 E-value=36 Score=25.83 Aligned_cols=31 Identities=6% Similarity=-0.035 Sum_probs=19.4
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
.-|| ||.++...+--.+..-||.-|=||.|+
T Consensus 256 ~g~P-CG~~I~~~~~~~~~~~~R~t~~CP~CQ 286 (295)
T 3vk8_A 256 KKDP-NGNKVIADKIIGSGKNKRTTYWAPAIQ 286 (295)
T ss_dssp SBCT-TSCBCEEEECSCCTTCCCEEEECTTTC
T ss_pred CCCC-CCCcEEEEEecCCCCCCCccEECCCCC
Confidence 4464 665554443323333579999999997
No 253
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=32.10 E-value=16 Score=18.66 Aligned_cols=10 Identities=30% Similarity=0.913 Sum_probs=8.2
Q ss_pred ccccCccccc
Q 041503 13 QVCNECGGQI 22 (99)
Q Consensus 13 ~~Cp~Cg~~~ 22 (99)
.+||.||+.+
T Consensus 4 ~~C~~C~k~V 13 (31)
T 1zfo_A 4 PNCARCGKIV 13 (31)
T ss_dssp CBCSSSCSBC
T ss_pred CcCCccCCEE
Confidence 5899999864
No 254
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=31.86 E-value=93 Score=19.55 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLH 84 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~ 84 (99)
+++..||+.+..-|..++.++++|+
T Consensus 18 aa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 18 ASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhheeeccccchhhhhhhhhHHHH
Confidence 4555577777777777777777774
No 255
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=31.69 E-value=24 Score=25.32 Aligned_cols=28 Identities=21% Similarity=0.460 Sum_probs=19.0
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCee
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNF 46 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF 46 (99)
..||.||..-..++-.+ | .|.|.+|+..
T Consensus 15 ~~CP~Cg~~d~~~~~~d----g--~~~C~~Cg~~ 42 (255)
T 1nui_A 15 IPCDNCGSSDGNSLFSD----G--HTFCYVCEKW 42 (255)
T ss_dssp ECCSSSCCSSCEEEETT----S--CEEETTTCCE
T ss_pred CcCCCCCCCCCceEeCC----C--CeecccCCCc
Confidence 78999998323444422 3 4899999963
No 256
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.07 E-value=26 Score=21.49 Aligned_cols=14 Identities=29% Similarity=0.812 Sum_probs=11.1
Q ss_pred ccccCccccceeee
Q 041503 13 QVCNECGGQIELFT 26 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~t 26 (99)
++||+|+...++|-
T Consensus 16 VkCp~C~~~q~VFS 29 (63)
T 3j20_W 16 VKCIDCGNEQIVFS 29 (63)
T ss_dssp EECSSSCCEEEEES
T ss_pred EECCCCCCeeEEEe
Confidence 89999998776653
No 257
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.87 E-value=21 Score=16.47 Aligned_cols=11 Identities=18% Similarity=0.594 Sum_probs=8.4
Q ss_pred CcceeeCCCCC
Q 041503 34 NRKFWKCRVCK 44 (99)
Q Consensus 34 gR~Fy~C~~C~ 44 (99)
|.+.|.|+.|+
T Consensus 4 ~~k~~~C~~C~ 14 (35)
T 2elx_A 4 GSSGYVCALCL 14 (35)
T ss_dssp CCCSEECSSSC
T ss_pred CCCCeECCCCc
Confidence 45669999886
No 258
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=30.85 E-value=98 Score=19.23 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRL 82 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~ 82 (99)
+.+..|.+++...+..+.+.+..
T Consensus 7 ~~l~~E~eel~~klk~~~ee~~~ 29 (71)
T 1uix_A 7 ANLANEKEELNNKLKEAQEQLSR 29 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444433333
No 259
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=30.85 E-value=82 Score=18.35 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHH--HHHHHHhhcC
Q 041503 77 SDKFRLLHKELE--HTQLRSKYGL 98 (99)
Q Consensus 77 ~~k~~~l~~El~--~~~~~~~~~~ 98 (99)
+++.++|..|-+ .++++.||||
T Consensus 26 k~Kh~kmE~eRE~mRq~IRdKY~i 49 (49)
T 1kil_E 26 KAKYAKMEAEREVMRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455556654433 4678899986
No 260
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=30.68 E-value=21 Score=24.35 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=22.3
Q ss_pred ccccCcccc-----c----e---eeeecCCCCCCcce--eeCCCC
Q 041503 13 QVCNECGGQ-----I----E---LFTSHTTKNPNRKF--WKCRVC 43 (99)
Q Consensus 13 ~~Cp~Cg~~-----~----~---~~tS~t~~NPgR~F--y~C~~C 43 (99)
++|+.||.+ + . ...|++.+-|.|.| +.|+.|
T Consensus 42 pkC~~cg~~L~GI~~~Rp~e~~~~rlsK~~KtvsRaYGG~lC~~C 86 (119)
T 3iz5_i 42 PKCPVTGKKIQGIPHLRPTEYKRPRLSRNRRTVNRPYGGVLSGPA 86 (119)
T ss_dssp CCSTTSSCCSSSCCSSCSSTTCCCCCCSCCCCCBCCSCCCCHHHH
T ss_pred CCCCCCCCccCCccCCCchhhhhhhccccCCCcccCCCccchHHH
Confidence 889999852 1 1 46789999999998 444444
No 261
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=30.67 E-value=20 Score=25.50 Aligned_cols=26 Identities=19% Similarity=0.535 Sum_probs=18.7
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCee
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNF 46 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF 46 (99)
+-||.|++.++.. +-.-|+|+.|+-.
T Consensus 43 ~ACp~CnKKV~~~--------~~g~~~CekC~~~ 68 (172)
T 3u50_C 43 YRCTCQGKSVLKY--------HGDSFFCESCQQF 68 (172)
T ss_dssp EECTTSCCCEEEE--------TTTEEEETTTTEE
T ss_pred hhchhhCCEeeeC--------CCCeEECCCCCCC
Confidence 7899999987631 1135889999865
No 262
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.58 E-value=84 Score=18.35 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El 87 (99)
+.++..+.+.|..++..|..|+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555444
No 263
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=30.56 E-value=1.2e+02 Score=22.62 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHKE 86 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~E 86 (99)
+.+..+++++..++.+|++++.+++..
T Consensus 102 ~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 102 RPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344446666667777777777777666
No 264
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=30.53 E-value=32 Score=27.28 Aligned_cols=32 Identities=34% Similarity=0.567 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 61 LLVEEVRKLTLEIERLSDKFRLLHKELEHTQL 92 (99)
Q Consensus 61 ~l~~ei~e~~~ei~~l~~k~~~l~~El~~~~~ 92 (99)
.|.++++++..+|+.|.++..++..+|....+
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 2dq3_A 72 EIQNRVKELKEEIDRLEEELRKVEEELKNTLL 103 (425)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777777777777777755443
No 265
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=30.06 E-value=19 Score=26.84 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041503 70 TLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 70 ~~ei~~l~~k~~~l~~El 87 (99)
..++.++++++++|+.++
T Consensus 161 ~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 161 NAAHQEALMKLERLEKEV 178 (250)
T ss_dssp HHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 266
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.04 E-value=1.2e+02 Score=23.62 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El 87 (99)
+|+.|...++.++++|..|+..|
T Consensus 27 ~i~~L~~~l~~~~~~i~~l~~~i 49 (323)
T 1lwu_C 27 QIQELSEMWRVNQQFVTRLQQQL 49 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566555433
No 267
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.94 E-value=1e+02 Score=19.07 Aligned_cols=22 Identities=5% Similarity=-0.117 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El 87 (99)
|++|+..+-+...+|..|+..|
T Consensus 30 IeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 30 LTELSEALADARLTGARNAELI 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554555555555554444
No 268
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=29.86 E-value=99 Score=19.39 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041503 66 VRKLTLEIERLSDKFRLLHKELEHTQLRSKY 96 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El~~~~~~~~~ 96 (99)
|..+..-++-|+.+|-.|-.|.+..+.+.|.
T Consensus 9 v~~LE~sld~LQTrfARLLaEy~ssQ~KLKq 39 (74)
T 3swf_A 9 VTRMESSVDLLQTRFARILAEYESMQQKLKQ 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555565555555554
No 269
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=29.64 E-value=1e+02 Score=19.10 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 041503 62 LVEEVRKLTLEIERLS 77 (99)
Q Consensus 62 l~~ei~e~~~ei~~l~ 77 (99)
+..|.+++...+..+.
T Consensus 11 l~~E~eel~~klk~~~ 26 (71)
T 1s1c_X 11 LRRENEELTEKMKKAE 26 (71)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444333333
No 270
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=29.52 E-value=67 Score=24.92 Aligned_cols=27 Identities=15% Similarity=-0.004 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHKE 86 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~E 86 (99)
..++++|..|...++.++++|..|+..
T Consensus 14 l~~~~~i~~L~~~l~~~~~ki~~L~~~ 40 (319)
T 1fzc_C 14 LTHDSSIRYLQEIYNSNNQKIVNLKEK 40 (319)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666677777777766543
No 271
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.28 E-value=75 Score=24.15 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 58 KIDLLVEEVRKLTLEIERLSDKFRLLHK 85 (99)
Q Consensus 58 k~~~l~~ei~e~~~ei~~l~~k~~~l~~ 85 (99)
.++.|+++++++.+||++|+.+..++.+
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445555666666666666555555444
No 272
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=29.18 E-value=73 Score=21.63 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041503 68 KLTLEIERLSDKFRLLHKELEHTQLRSKY 96 (99)
Q Consensus 68 e~~~ei~~l~~k~~~l~~El~~~~~~~~~ 96 (99)
+...|+++++.|++.+-+|++-+-++.+.
T Consensus 65 e~e~E~ae~k~KYD~~lqe~ese~~~kkK 93 (115)
T 3vem_A 65 ELERKMAEVQAEFRRKFHEVEAEHNTRTT 93 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888988888888876665554
No 273
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=29.07 E-value=84 Score=17.91 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041503 66 VRKLTLEIERLSDKFRLLHKELEHTQLRSKYG 97 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El~~~~~~~~~~ 97 (99)
|..+..-++-|+.++-.|-.|.+..+.+.|..
T Consensus 7 v~~Le~~ld~LqTr~ArLlae~~ssq~KlKqR 38 (46)
T 3swy_A 7 VEQLGSSLDTLQTRFARLLAEYNATQMKMKQR 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556667777777777777777766643
No 274
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=28.99 E-value=1.2e+02 Score=20.96 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
+-|..||+++..++..|...+..+...+.
T Consensus 5 ~~i~~ei~e~~~~i~~l~~~Ik~il~~~~ 33 (129)
T 3f6n_A 5 NQIQKEVSEILSDQKSMKADIKAILELLG 33 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555677776667777666666554443
No 275
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=28.91 E-value=23 Score=19.93 Aligned_cols=30 Identities=20% Similarity=0.612 Sum_probs=19.0
Q ss_pred cccccCccccceeeeecCCCCCCcce----eeCCCCC
Q 041503 12 LQVCNECGGQIELFTSHTTKNPNRKF----WKCRVCK 44 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~t~~NPgR~F----y~C~~C~ 44 (99)
.+.|+.|+.++..... .=.|+.| |+|..|+
T Consensus 5 ~~~C~~C~~~I~~~~~---~a~~~~~H~~CF~C~~C~ 38 (66)
T 1nyp_A 5 VPICGACRRPIEGRVV---NAMGKQWHVEHFVCAKCE 38 (66)
T ss_dssp CCEETTTTEECCSCEE---CCTTSBEETTTCBCTTTC
T ss_pred CCCCcccCCEecceEE---EECccccccCcCEECCCC
Confidence 3789999987653222 2235666 6787775
No 276
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=28.70 E-value=48 Score=24.13 Aligned_cols=39 Identities=5% Similarity=0.179 Sum_probs=15.0
Q ss_pred EeccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 47 QWAEDRKFSNEKIDLLVEEVRKLTLEIERLSDKFRLLHKELEHTQL 92 (99)
Q Consensus 47 ~W~De~~~~~~k~~~l~~ei~e~~~ei~~l~~k~~~l~~El~~~~~ 92 (99)
.|.|+..-.+.+ +-++-.++..++..+..|-.|+++|.-
T Consensus 121 ~~ld~a~~~~~~-------~l~~lvelA~le~~~~~L~~eIkkT~R 159 (223)
T 3a5c_G 121 AYTLEASRAFRR-------YAEALIRVANTETRLKKIGEEIKKTTR 159 (223)
T ss_dssp -----------C-------HHHHHHTHHHHHHHHHHHTHHHHHHTH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 577776433333 334445555555566666666665543
No 277
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=28.67 E-value=24 Score=16.33 Aligned_cols=11 Identities=27% Similarity=0.987 Sum_probs=8.4
Q ss_pred CcceeeCCCCC
Q 041503 34 NRKFWKCRVCK 44 (99)
Q Consensus 34 gR~Fy~C~~C~ 44 (99)
|.+.|.|+.|+
T Consensus 4 ~~k~~~C~~C~ 14 (35)
T 1srk_A 4 GKRPFVCRICL 14 (35)
T ss_dssp CCSCEECSSSC
T ss_pred CCcCeeCCCCC
Confidence 45669999886
No 278
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.67 E-value=40 Score=19.36 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=16.3
Q ss_pred cccCccccce--------eeeecCCCCCCcce----eeCCCCC
Q 041503 14 VCNECGGQIE--------LFTSHTTKNPNRKF----WKCRVCK 44 (99)
Q Consensus 14 ~Cp~Cg~~~~--------~~tS~t~~NPgR~F----y~C~~C~ 44 (99)
.|+.||.... +.+..+...|.+.| |.|+.|+
T Consensus 27 ~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~ 69 (95)
T 2ej4_A 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREG 69 (95)
T ss_dssp SCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTT
T ss_pred cccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCC
Confidence 3778886422 11223334344444 8888775
No 279
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=28.41 E-value=87 Score=21.54 Aligned_cols=33 Identities=6% Similarity=0.054 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHKELEHTQL 92 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~El~~~~~ 92 (99)
..|+..++++...+..++.++.+|+..+.+..+
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345666777777777777777777766665544
No 280
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=28.36 E-value=89 Score=18.37 Aligned_cols=23 Identities=22% Similarity=0.710 Sum_probs=17.8
Q ss_pred cccccCccccceeeeecCCCCCCcceeeCCCCC
Q 041503 12 LQVCNECGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
.+.| -||.+ .+.|+....|-.|.
T Consensus 16 ~~~C-~C~~~---------~~~g~~mI~Cd~C~ 38 (72)
T 1wee_A 16 KVDC-KCGTK---------DDDGERMLACDGCG 38 (72)
T ss_dssp EECC-TTCCC---------SCCSSCEEECSSSC
T ss_pred ceEe-eCCCc---------cCCCCcEEECCCCC
Confidence 4899 89875 35677788888886
No 281
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=28.36 E-value=20 Score=22.26 Aligned_cols=14 Identities=21% Similarity=0.646 Sum_probs=11.8
Q ss_pred ccccCccccceeee
Q 041503 13 QVCNECGGQIELFT 26 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~t 26 (99)
++||+|+...++|-
T Consensus 8 VKCp~C~niq~VFS 21 (66)
T 1qxf_A 8 VKCPDCEHEQVIFD 21 (66)
T ss_dssp EECTTTCCEEEEES
T ss_pred EECCCCCCceEEEe
Confidence 89999998777764
No 282
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.07 E-value=33 Score=15.88 Aligned_cols=12 Identities=25% Similarity=0.601 Sum_probs=8.9
Q ss_pred CCcceeeCCCCC
Q 041503 33 PNRKFWKCRVCK 44 (99)
Q Consensus 33 PgR~Fy~C~~C~ 44 (99)
.+.+.|.|+.|+
T Consensus 5 ~~~~~~~C~~C~ 16 (36)
T 2elr_A 5 SSGKTHLCDMCG 16 (36)
T ss_dssp CCCSSCBCTTTC
T ss_pred CCCCCeecCcCC
Confidence 455678999886
No 283
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=27.98 E-value=12 Score=27.04 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
.+++..+++++++++++|++++++
T Consensus 258 ~~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 258 EDNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp ------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555666666666666655554
No 284
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=27.98 E-value=33 Score=26.20 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=20.3
Q ss_pred cccccCccccceeeeecCCCCCCcceeeCCCCCeeE
Q 041503 12 LQVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQ 47 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~ 47 (99)
...||.||.... .-..++.+-.+.|..|++..
T Consensus 21 ~~~Cp~Cg~~~~----~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 21 VLTCPECKVYPP----KIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCCSTTCCSCC----CCCCCSSSCSCCCSSSCCCC
T ss_pred CCcCcCCCCCCC----ceEEECCCCCEecCCCCeEc
Confidence 367999987421 11124567788899888644
No 285
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.86 E-value=1.5e+02 Score=23.50 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELEHTQ 91 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~~~~ 91 (99)
.++++..+++++++.+..+.+.|.++.
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~l~~~~ 44 (412)
T 3u06_A 18 RTEELLRCNEQQAAELETCKEQLFQSN 44 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554433
No 286
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=27.76 E-value=1.6e+02 Score=20.78 Aligned_cols=14 Identities=14% Similarity=0.079 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHHHH
Q 041503 56 NEKIDLLVEEVRKL 69 (99)
Q Consensus 56 ~~k~~~l~~ei~e~ 69 (99)
++.+..|+.|-..+
T Consensus 4 ~qe~~~Le~Ek~~~ 17 (155)
T 2aze_A 4 AQECQNLEVERQRR 17 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555543333
No 287
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=27.71 E-value=27 Score=20.25 Aligned_cols=28 Identities=18% Similarity=0.565 Sum_probs=16.0
Q ss_pred ccccCccccce-e-eeecCCCCCCcce----eeCCCCC
Q 041503 13 QVCNECGGQIE-L-FTSHTTKNPNRKF----WKCRVCK 44 (99)
Q Consensus 13 ~~Cp~Cg~~~~-~-~tS~t~~NPgR~F----y~C~~C~ 44 (99)
++|+.|++++. . .+.- .|+.| |+|..|+
T Consensus 1 p~C~~C~~~I~~~~~v~a----~~~~~H~~CF~C~~C~ 34 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTS----LGKDWHRPCLKCEKCG 34 (76)
T ss_dssp CBCTTTSSBCCGGGEEEE----TTEEEETTTCBCTTTC
T ss_pred CcCCCCCCEEECceEEEE----CCccccCCCCCccccC
Confidence 46888998654 2 2211 15555 5677664
No 288
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.68 E-value=25 Score=16.59 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=8.5
Q ss_pred CcceeeCCCCC
Q 041503 34 NRKFWKCRVCK 44 (99)
Q Consensus 34 gR~Fy~C~~C~ 44 (99)
+.+.|.|+.|+
T Consensus 6 ~~k~~~C~~C~ 16 (37)
T 2elp_A 6 SGRAMKCPYCD 16 (37)
T ss_dssp CCCCEECSSSS
T ss_pred CCCCeECCCCC
Confidence 45569999886
No 289
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=27.61 E-value=1.6e+02 Score=21.30 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELEHTQLR 93 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~~~~~~ 93 (99)
-+++++..|+.+++++++| +|+++.-|.
T Consensus 177 ~l~~ld~~i~~~~~~i~~l-~~~k~~l~~ 204 (425)
T 1yf2_A 177 ILTKIDEGIEIIEKSINKL-ERIKKGLMH 204 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3456777777777777666 556655443
No 290
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=27.58 E-value=42 Score=24.29 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELEHTQLR 93 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~~~~~~ 93 (99)
++-++-.++..++..+..|-.|+++|.-+
T Consensus 145 ~~l~~lvelA~le~~~~~L~~eIkkT~RR 173 (217)
T 3aon_A 145 QLLPKLLKLAEVEKTCQLMAEEIEKTRRR 173 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45566678888888888888888887654
No 291
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.42 E-value=21 Score=15.39 Aligned_cols=8 Identities=38% Similarity=0.796 Sum_probs=6.0
Q ss_pred eeeCCCCC
Q 041503 37 FWKCRVCK 44 (99)
Q Consensus 37 Fy~C~~C~ 44 (99)
.|.|+.|+
T Consensus 2 ~~~C~~C~ 9 (29)
T 2m0e_A 2 EHKCPHCD 9 (29)
T ss_dssp CCCCSSCC
T ss_pred CCcCCCCC
Confidence 57888776
No 292
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=27.25 E-value=1e+02 Score=18.38 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041503 73 IERLSDKFRLLHKELEHTQLRS 94 (99)
Q Consensus 73 i~~l~~k~~~l~~El~~~~~~~ 94 (99)
+..|++.+..|.+=|++++...
T Consensus 19 V~eL~qe~k~m~k~lEeEqkAR 40 (56)
T 2w6b_A 19 VQELRQDNKKMKKSLEEEQRAR 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555554433
No 293
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=27.18 E-value=1.1e+02 Score=18.66 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=20.4
Q ss_pred hhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 56 NEKIDLLVE---EVRKLTLEIERLSDKFRLLHKELEHT 90 (99)
Q Consensus 56 ~~k~~~l~~---ei~e~~~ei~~l~~k~~~l~~El~~~ 90 (99)
+.|...|.. =|++|..+...|..++..|+.++...
T Consensus 39 ~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 39 LNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444433 24566666777777777776666543
No 294
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=26.94 E-value=1.3e+02 Score=19.28 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLL 83 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l 83 (99)
.-|-.+|.+++.+|..|+..++.|
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445557778888887777666666
No 295
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=26.65 E-value=1.3e+02 Score=19.09 Aligned_cols=9 Identities=11% Similarity=0.172 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 041503 79 KFRLLHKEL 87 (99)
Q Consensus 79 k~~~l~~El 87 (99)
++..|..++
T Consensus 78 e~dnl~~~~ 86 (93)
T 3s4r_A 78 ERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 296
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.59 E-value=1.2e+02 Score=23.45 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 58 KIDLLVEEVRKLTLEIERLSDKFRLLHKEL 87 (99)
Q Consensus 58 k~~~l~~ei~e~~~ei~~l~~k~~~l~~El 87 (99)
|...|+.||.++...|.....+++.|+..|
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l 35 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMW 35 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 334445555444444444444444444333
No 297
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=26.51 E-value=1.3e+02 Score=19.31 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELEHTQ 91 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~~~~ 91 (99)
++.+|..+...|..++..|..|+.+..
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLA 75 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666667777777666543
No 298
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=26.43 E-value=1.3e+02 Score=19.15 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=4.6
Q ss_pred HHHHHHHhh
Q 041503 88 EHTQLRSKY 96 (99)
Q Consensus 88 ~~~~~~~~~ 96 (99)
++.+.|..|
T Consensus 54 eE~~~w~ey 62 (96)
T 3q8t_A 54 EEAQYQREY 62 (96)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555554
No 299
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=26.32 E-value=73 Score=24.66 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
.|+.|...++.|++||..|+..|..
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~~ 53 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIKT 53 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777788888888888776653
No 300
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.16 E-value=42 Score=19.03 Aligned_cols=29 Identities=24% Similarity=0.589 Sum_probs=18.4
Q ss_pred cccccCcccccee---eeecCCCCCCcce----eeCCCCC
Q 041503 12 LQVCNECGGQIEL---FTSHTTKNPNRKF----WKCRVCK 44 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~---~tS~t~~NPgR~F----y~C~~C~ 44 (99)
.++|+.|+.++.. .+.- .|+.| |+|..|+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a----~~~~~H~~CF~C~~C~ 40 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA----LDRVFHVGCFVCSTCR 40 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC----SSSEECTTTCBCSSSC
T ss_pred CCCCccCCCccCCCceEEEE----CCCeEcccCCcccccC
Confidence 4789999987652 2222 24555 7788775
No 301
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=26.10 E-value=1.6e+02 Score=20.21 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 62 LVEEVRKLTLEIERLSDKFRLLHKELEHTQ 91 (99)
Q Consensus 62 l~~ei~e~~~ei~~l~~k~~~l~~El~~~~ 91 (99)
|...+++|+-++.+|+..-.+++.++++.+
T Consensus 19 L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~ 48 (179)
T 2gd5_A 19 IRKEMRVVDRQIRDIQREEEKVKRSVKDAA 48 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666665543
No 302
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=25.94 E-value=14 Score=23.93 Aligned_cols=34 Identities=15% Similarity=0.381 Sum_probs=21.4
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEec
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWA 49 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~ 49 (99)
--| .||..-. ++...-.-|---..|++|.+++.+
T Consensus 24 ypC-rCGd~F~--IteedLe~ge~iv~C~sCSL~IkV 57 (89)
T 2jr7_A 24 YPC-PCGDNFS--ITKEDLENGEDVATCPSCSLIIKV 57 (89)
T ss_dssp EEC-TTSSEEE--EEHHHHHHTCCEEECTTTCCEEEE
T ss_pred EcC-CCCCEEE--ECHHHHhCCCEEEECCCCccEEEE
Confidence 569 5987632 222222224467889999988876
No 303
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=25.82 E-value=1.3e+02 Score=18.99 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 68 KLTLEIERLSDKFRLLHKELEHTQLR 93 (99)
Q Consensus 68 e~~~ei~~l~~k~~~l~~El~~~~~~ 93 (99)
++..++..|+.+++.+..||++....
T Consensus 41 ~~E~ei~sL~kKiq~lE~eld~~~e~ 66 (101)
T 3u59_A 41 QLEEEQQGLQKKLKGTEDEVEKYSES 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777888887777765443
No 304
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.66 E-value=1.2e+02 Score=18.50 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 63 VEEVRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 63 ~~ei~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
+..|.++..+...+...+..|+.++..
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555444443
No 305
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=25.66 E-value=1.5e+02 Score=19.84 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041503 74 ERLSDKFRLLHKELEHT 90 (99)
Q Consensus 74 ~~l~~k~~~l~~El~~~ 90 (99)
.+|..++++++.+|...
T Consensus 10 ~~L~~~i~~l~~~L~~l 26 (122)
T 3viq_A 10 LKLEKEVRNLQEQLITA 26 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 306
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=25.61 E-value=34 Score=22.27 Aligned_cols=31 Identities=26% Similarity=0.550 Sum_probs=18.5
Q ss_pred cccccCccccceeeeecCCCCCCcce----eeCCCCC
Q 041503 12 LQVCNECGGQIELFTSHTTKNPNRKF----WKCRVCK 44 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~t~~NPgR~F----y~C~~C~ 44 (99)
..+|+.|++++.-... ..-.|+.| |+|..|+
T Consensus 61 ~~~C~~C~~~I~~~~~--v~a~~~~wH~~CF~C~~C~ 95 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFL--LYAMDSYWHSRCLKCSSCQ 95 (123)
T ss_dssp CSBBSSSSSBCCSSSE--EEETTEEEETTTSBCTTTC
T ss_pred CCcCcCCCCCcCCcEE--EEeCCcEEcccccCcCcCC
Confidence 3899999987653210 01135566 6787664
No 307
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=25.58 E-value=40 Score=27.46 Aligned_cols=32 Identities=25% Similarity=0.664 Sum_probs=21.8
Q ss_pred CCCCCCCcccccCccccceeeeecCCCCCCcceeeCCCCCeeEe
Q 041503 5 TNESRNSLQVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQW 48 (99)
Q Consensus 5 s~~~~~~~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W 48 (99)
++..+.....| -|+.+- ++++....|-.|. .|
T Consensus 30 s~~~~~~~~yC-~C~~~~---------d~~~~MIqCd~C~--~W 61 (488)
T 3kv5_D 30 SAPPPPPPVYC-VCRQPY---------DVNRFMIECDICK--DW 61 (488)
T ss_dssp --CCCCCCEET-TTTEEC---------CTTSCEEEBTTTC--CE
T ss_pred CCcCCCCCeEE-eCCCcC---------CCCCCeEEccCCC--Cc
Confidence 34445556899 999753 6677788888887 55
No 308
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=25.54 E-value=11 Score=22.77 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=14.7
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCe
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKN 45 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~f 45 (99)
..|..||..+--..-. .|..|+|
T Consensus 18 ~~CrRCG~~syH~qK~----------~Ca~CGy 40 (57)
T 1vq8_1 18 TKCRRCGEKSYHTKKK----------VCSSCGF 40 (57)
T ss_dssp EECTTTCSEEEETTTT----------EETTTCT
T ss_pred ccccccCChhhhcccc----------ccccccC
Confidence 7788888765433333 2777776
No 309
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.42 E-value=1.3e+02 Score=18.86 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El~ 88 (99)
|.++..||.+|+-+++.+.-+|+
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l~ 51 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQLN 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444444444444444444443
No 310
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.34 E-value=79 Score=25.18 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 61 LLVEEVRKLTLEIERLSDKFRLLHKELEHT 90 (99)
Q Consensus 61 ~l~~ei~e~~~ei~~l~~k~~~l~~El~~~ 90 (99)
.|++|++.+..++.++......+..++++.
T Consensus 36 ~le~e~~~l~~e~~r~~~e~~~~~~~~~~~ 65 (434)
T 4b4t_M 36 LLDNEIRIFRSELQRLSHENNVMLEKIKDN 65 (434)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665555555555543
No 311
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=25.28 E-value=1.6e+02 Score=19.71 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLLHKELEHT 90 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El~~~ 90 (99)
|+.|..+++.|+..+..++.|--..
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~ 41 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRV 41 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333
No 312
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=25.19 E-value=1.1e+02 Score=19.88 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=24.0
Q ss_pred EeccCCcc---chhhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 041503 47 QWAEDRKF---SNEKIDLLVEEVRKLTLEI------------ERLSDKFRLLHKELEHTQ 91 (99)
Q Consensus 47 ~W~De~~~---~~~k~~~l~~ei~e~~~ei------------~~l~~k~~~l~~El~~~~ 91 (99)
+|.|-..- ...+...|..|+.++..|+ .+|+.++.+|..||++..
T Consensus 17 ~~~~~v~p~s~~~~~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~ 76 (94)
T 3vlc_E 17 KWISKFAPGNELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLK 76 (94)
T ss_dssp ---------CCTTHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHhCcccHhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56655421 2344455566766666543 567888888888887653
No 313
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=25.14 E-value=37 Score=21.75 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=11.2
Q ss_pred ccccCccccceeee
Q 041503 13 QVCNECGGQIELFT 26 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~t 26 (99)
++||+|+...++|-
T Consensus 33 VkCp~C~n~q~VFS 46 (81)
T 2xzm_6 33 VKCAQCQNIQMIFS 46 (81)
T ss_dssp EECSSSCCEEEEET
T ss_pred eECCCCCCeeEEEe
Confidence 89999998777664
No 314
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=25.09 E-value=14 Score=20.72 Aligned_cols=10 Identities=50% Similarity=0.790 Sum_probs=6.8
Q ss_pred ecCC-CCCCcc
Q 041503 27 SHTT-KNPNRK 36 (99)
Q Consensus 27 S~t~-~NPgR~ 36 (99)
|+.+ +||||+
T Consensus 25 snDP~RNP~rk 35 (38)
T 3arc_I 25 SGDPARNPKRK 35 (38)
T ss_dssp TTGGGCSSSCC
T ss_pred CCCCCCCCCcc
Confidence 4444 899986
No 315
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.86 E-value=1.5e+02 Score=19.34 Aligned_cols=16 Identities=44% Similarity=0.522 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 041503 68 KLTLEIERLSDKFRLL 83 (99)
Q Consensus 68 e~~~ei~~l~~k~~~l 83 (99)
++..||++|..++..|
T Consensus 51 eL~~EI~~L~~eI~~L 66 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQL 66 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666655
No 316
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=24.84 E-value=46 Score=26.27 Aligned_cols=35 Identities=26% Similarity=0.597 Sum_probs=20.5
Q ss_pred cccccCccccce--ee-eecCCCCC-------Cc-ceeeCCCCCee
Q 041503 12 LQVCNECGGQIE--LF-TSHTTKNP-------NR-KFWKCRVCKNF 46 (99)
Q Consensus 12 ~~~Cp~Cg~~~~--~~-tS~t~~NP-------gR-~Fy~C~~C~fF 46 (99)
.|.|+.||.... .. +-....+| +| .-|+|+.|+..
T Consensus 119 ~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~ 164 (335)
T 1x3z_A 119 KPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNI 164 (335)
T ss_dssp SCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCE
T ss_pred CCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcc
Confidence 489999997641 22 12222333 23 34999999743
No 317
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=24.83 E-value=45 Score=23.28 Aligned_cols=9 Identities=33% Similarity=1.202 Sum_probs=5.1
Q ss_pred eeCCCCCee
Q 041503 38 WKCRVCKNF 46 (99)
Q Consensus 38 y~C~~C~fF 46 (99)
|-|..|+||
T Consensus 84 Y~C~~C~l~ 92 (143)
T 2dkt_A 84 YYCSICHLF 92 (143)
T ss_dssp EECSSSCCE
T ss_pred eEeceeecc
Confidence 335566666
No 318
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.75 E-value=44 Score=18.98 Aligned_cols=29 Identities=24% Similarity=0.700 Sum_probs=18.5
Q ss_pred cccccCcccccee-----eeecCCCCCCcce----eeCCCCC
Q 041503 12 LQVCNECGGQIEL-----FTSHTTKNPNRKF----WKCRVCK 44 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~-----~tS~t~~NPgR~F----y~C~~C~ 44 (99)
..+|+.|++++.- .+.- .|+.| |+|..|+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a----~~~~wH~~CF~C~~C~ 42 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF----EERQWHNDCFNCKKCS 42 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC----SSCEECTTTCBCSSSC
T ss_pred CCCCcCCCccccCCCCcceEEE----CCcccCcccCEeccCC
Confidence 4789999997763 2222 34555 6777675
No 319
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=24.62 E-value=13 Score=24.78 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCc--------ccccCcccc
Q 041503 1 MSSSTNESRNSL--------QVCNECGGQ 21 (99)
Q Consensus 1 mSSSs~~~~~~~--------~~Cp~Cg~~ 21 (99)
|+|..++..++. +.||+|...
T Consensus 1 ~~~~~~G~~~a~~~i~~f~D~~Cp~C~~~ 29 (186)
T 3bci_A 1 MASATTSSKNGKPLVVVYGDYKCPYCKEL 29 (186)
T ss_dssp ----------CCCEEEEEECTTCHHHHHH
T ss_pred CCCcCcCCCCCCeEEEEEECCCChhHHHH
Confidence 677777766553 899999863
No 320
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.55 E-value=1.4e+02 Score=22.23 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHKELEHTQL 92 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~El~~~~~ 92 (99)
+.+++.+.++..++..+.+++.+|+.++.+-..
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~ 127 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIEL 127 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666778888888888888888777765543
No 321
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=24.52 E-value=42 Score=24.05 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=28.0
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEeccCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAEDR 52 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~De~ 52 (99)
+.||.|+.+=..++..+. -+.-|-+|..|+...=+|..
T Consensus 97 VlC~~C~sPdT~L~k~~~--~r~~~l~C~ACGa~~~V~~~ 134 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPK--KQTIGNSCKACGYRGMLDTH 134 (170)
T ss_dssp HSCTTTSSSCEEEEEETT--TTEEEEEETTTCCCCCSCSS
T ss_pred EECCCCCCCccEEEEecC--CCEEEEEccccCCccccccc
Confidence 899999998666665321 25577889999988777753
No 322
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=24.51 E-value=38 Score=21.77 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=11.4
Q ss_pred ccccCccccceeee
Q 041503 13 QVCNECGGQIELFT 26 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~t 26 (99)
++||+|+...++|-
T Consensus 35 VkCp~C~~~q~VFS 48 (82)
T 3u5c_b 35 VKCPGCLNITTVFS 48 (82)
T ss_dssp EECTTSCSCEEEES
T ss_pred EECCCCCCeeEEEe
Confidence 89999998777664
No 323
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.45 E-value=24 Score=16.56 Aligned_cols=11 Identities=27% Similarity=0.930 Sum_probs=8.5
Q ss_pred CcceeeCCCCC
Q 041503 34 NRKFWKCRVCK 44 (99)
Q Consensus 34 gR~Fy~C~~C~ 44 (99)
|.+.|.|+.|+
T Consensus 6 ~~k~~~C~~C~ 16 (37)
T 2elo_A 6 SGRSYSCPVCE 16 (37)
T ss_dssp CCCCCEETTTT
T ss_pred CCCCcCCCCCC
Confidence 45669999887
No 324
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=24.39 E-value=85 Score=20.48 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041503 74 ERLSDKFRLLHKELEHT 90 (99)
Q Consensus 74 ~~l~~k~~~l~~El~~~ 90 (99)
.+|+.++.+|..||++.
T Consensus 52 aKL~Rk~DKl~~ele~l 68 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNL 68 (93)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566666666666654
No 325
>3sjq_C Small conductance calcium-activated potassium CHA protein 2; protein-protein complex, EF hand, calmodulin, calcium bindin binding protein; HET: PHU; 1.90A {Rattus norvegicus}
Probab=24.27 E-value=1.2e+02 Score=19.64 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLLHKELEHTQL 92 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El~~~~~ 92 (99)
+|.+..|.+.|+++--.| .||.++++
T Consensus 55 lR~vk~eqRkL~DqaNtl-vDlaK~~~ 80 (87)
T 3sjq_C 55 LRSVKMEQRKLNDQANTL-VDLAKTQL 80 (87)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHTTS
T ss_pred HHHHHHHHHHHhhhhHHH-HHHHHHHH
Confidence 778899999999999999 88888765
No 326
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=24.21 E-value=1.3e+02 Score=21.50 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 58 KIDLLVEEVRKLTLEIERLSDKFRLL 83 (99)
Q Consensus 58 k~~~l~~ei~e~~~ei~~l~~k~~~l 83 (99)
|.++|..|++++..++.+++.++...
T Consensus 39 Krd~L~~ef~~i~~~~~~~r~~~~~~ 64 (217)
T 3aon_A 39 KQDELMRQFILLIRKNNELRQAIEKE 64 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666655555555444443
No 327
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.13 E-value=51 Score=15.86 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=9.8
Q ss_pred CCCcceeeCCCCC
Q 041503 32 NPNRKFWKCRVCK 44 (99)
Q Consensus 32 NPgR~Fy~C~~C~ 44 (99)
..|.+.|.|+.|+
T Consensus 6 H~~~k~~~C~~C~ 18 (42)
T 2en2_A 6 SGGEKPYKCETCG 18 (42)
T ss_dssp CCSSCSEECTTTC
T ss_pred cCCCCCEeCCCcC
Confidence 3466779999886
No 328
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.10 E-value=1.9e+02 Score=22.86 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 61 LLVEEVRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 61 ~l~~ei~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
.|+.|++-+..+.+.++++++.++.|+++
T Consensus 53 ~le~~~~~L~~e~e~l~~~~~~~~~e~~~ 81 (428)
T 4b4t_K 53 KLEKEYELLTLQEDYIKDEQRHLKRELKR 81 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544444444455555555555433
No 329
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.02 E-value=1.8e+02 Score=21.52 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 59 IDLLVEEVRKLTLEIERLSDKFRLLH 84 (99)
Q Consensus 59 ~~~l~~ei~e~~~ei~~l~~k~~~l~ 84 (99)
..-|-.+|.++++||..|+..+..|+
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888888876666663
No 330
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=23.84 E-value=42 Score=18.04 Aligned_cols=14 Identities=50% Similarity=0.508 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHH
Q 041503 71 LEIERLSDKFRLLH 84 (99)
Q Consensus 71 ~ei~~l~~k~~~l~ 84 (99)
.||++|..+|.+|.
T Consensus 20 geieelhkkfheli 33 (35)
T 1qp6_A 20 GEIEELHKKFHELI 33 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHh
Confidence 47888887877764
No 331
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=23.79 E-value=42 Score=21.04 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=15.7
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCee
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNF 46 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF 46 (99)
..|-.|++. ....||+|..|+|-
T Consensus 48 ~~C~~C~~~-----------~~~~~Y~C~~C~f~ 70 (89)
T 1v5n_A 48 YTCDKCEEE-----------GTIWSYHCDECDFD 70 (89)
T ss_dssp CCCTTTSCC-----------CCSCEEECTTTCCC
T ss_pred eEeCCCCCc-----------CCCcEEEcCCCCCe
Confidence 457666643 23578999999873
No 332
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=23.73 E-value=2.2e+02 Score=20.82 Aligned_cols=28 Identities=11% Similarity=0.300 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 61 LLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 61 ~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
.+..+|.++..+++.+++++.-+.-|.+
T Consensus 63 ~l~~~l~~l~~e~~el~d~~lR~~AEfe 90 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHRYLRLYADFE 90 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555544444443
No 333
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=23.73 E-value=87 Score=21.48 Aligned_cols=20 Identities=40% Similarity=0.383 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 041503 58 KIDLLVEEVRKLTLEIERLS 77 (99)
Q Consensus 58 k~~~l~~ei~e~~~ei~~l~ 77 (99)
.++.+..|+..+..+|++|+
T Consensus 37 ~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 37 KYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777775
No 334
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.59 E-value=23 Score=21.71 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=16.5
Q ss_pred cccccCccccceeeeecCCCCCCcceeeCCCCCe
Q 041503 12 LQVCNECGGQIELFTSHTTKNPNRKFWKCRVCKN 45 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~f 45 (99)
-..|..||..+--..-.+ |..|+|
T Consensus 17 H~lCrRCG~~syH~qK~~----------Ca~CGy 40 (62)
T 3j21_e 17 HIRCRRCGRVSYNVKKGY----------CAACGF 40 (62)
T ss_dssp CCBCSSSCSBCEETTTTE----------ETTTCT
T ss_pred eeeecccCcchhcccccc----------ccccCC
Confidence 378989998654444333 888887
No 335
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=23.57 E-value=1.3e+02 Score=18.27 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHH--HHHHHHhhcC
Q 041503 76 LSDKFRLLHKELE--HTQLRSKYGL 98 (99)
Q Consensus 76 l~~k~~~l~~El~--~~~~~~~~~~ 98 (99)
-+++.++|..|-+ .+.++.||||
T Consensus 28 Rk~Kh~kME~ERE~mRQ~IRdKY~i 52 (63)
T 3rk3_E 28 RKAKYAKMEAEREAVRQGIRDKYGI 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3556667755544 5678899997
No 336
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=23.50 E-value=39 Score=18.49 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLL 83 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l 83 (99)
-++++|+---+..+++.++..++|
T Consensus 12 ravenelhynkslleevkdelqkm 35 (38)
T 1c94_A 12 RAVENELHYNKSLLEEVKDELQKM 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344555544444455555544444
No 337
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.50 E-value=26 Score=20.48 Aligned_cols=9 Identities=44% Similarity=1.080 Sum_probs=7.1
Q ss_pred ccccCcccc
Q 041503 13 QVCNECGGQ 21 (99)
Q Consensus 13 ~~Cp~Cg~~ 21 (99)
..||.||..
T Consensus 15 ~iCpkC~a~ 23 (51)
T 3j21_g 15 YVCLRCGAT 23 (51)
T ss_dssp EECTTTCCE
T ss_pred ccCCCCCCc
Confidence 678888876
No 338
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=23.47 E-value=46 Score=21.28 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKE 86 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~E 86 (99)
+|++++.++++|+.+--.+..+
T Consensus 16 di~eLkkevkKL~~~A~q~kmd 37 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMD 37 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566655544444433
No 339
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=23.40 E-value=24 Score=22.66 Aligned_cols=16 Identities=19% Similarity=0.602 Sum_probs=12.2
Q ss_pred CcceeeCC-CCCeeEec
Q 041503 34 NRKFWKCR-VCKNFQWA 49 (99)
Q Consensus 34 gR~Fy~C~-~C~fF~W~ 49 (99)
|++||.|+ .++.|.=.
T Consensus 66 G~rYF~C~~~~G~Fv~~ 82 (95)
T 1whl_A 66 GKQLFQCDEDCGVFVAL 82 (95)
T ss_dssp TEECCCCCTTTEEEECG
T ss_pred CEEEeecCCCeEEEEcH
Confidence 38999998 78777643
No 340
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=23.39 E-value=33 Score=21.15 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=18.8
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEeccCC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAEDR 52 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~De~ 52 (99)
+.|| ||....+.- +-+--+|| |+--.=.+..
T Consensus 5 v~C~-C~~~~~~~~-------~~kT~~C~-CG~~~~~~k~ 35 (71)
T 1gh9_A 5 FRCD-CGRALYSRE-------GAKTRKCV-CGRTVNVKDR 35 (71)
T ss_dssp EEET-TSCCEEEET-------TCSEEEET-TTEEEECCSS
T ss_pred EECC-CCCEEEEcC-------CCcEEECC-CCCeeeeceE
Confidence 6798 997633221 33456798 9865555554
No 341
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.38 E-value=71 Score=19.38 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=21.5
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEeccC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAED 51 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~De 51 (99)
..||.|+.+...- .......|+.|+...=..+
T Consensus 9 L~CP~ck~~L~~~-------~~~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 9 LACPICKGPLKLS-------ADKTELISKGAGLAYPIRD 40 (69)
T ss_dssp CCCTTTCCCCEEC-------TTSSEEEETTTTEEEEEET
T ss_pred eeCCCCCCcCeEe-------CCCCEEEcCCCCcEecCcC
Confidence 7899999876542 2356778999985444433
No 342
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=23.33 E-value=27 Score=24.35 Aligned_cols=24 Identities=21% Similarity=0.703 Sum_probs=16.9
Q ss_pred ccccC--ccccceeeeecCCCCCCcceeeCCCCC
Q 041503 13 QVCNE--CGGQIELFTSHTTKNPNRKFWKCRVCK 44 (99)
Q Consensus 13 ~~Cp~--Cg~~~~~~tS~t~~NPgR~Fy~C~~C~ 44 (99)
+-||. |++.+..- .+| -|+|+.|+
T Consensus 44 ~aC~~~~CnKKv~~~------~~g--~~~CekC~ 69 (181)
T 1l1o_C 44 QACPTQDCNKKVIDQ------QNG--LYRCEKCD 69 (181)
T ss_dssp EBCCSTTCCCBCEEE------TTT--EEEETTTT
T ss_pred CCCCchhcCCccccC------CCC--eEECCCCC
Confidence 78998 99976521 223 58999886
No 343
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=23.26 E-value=67 Score=25.03 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 041503 56 NEKIDLLVEEVRKL------TLEIERLSDKFRLLHKELEHTQL 92 (99)
Q Consensus 56 ~~k~~~l~~ei~e~------~~ei~~l~~k~~~l~~El~~~~~ 92 (99)
-+|+.+|+.|+... ..-+..|++++-+|+.||++.+-
T Consensus 12 ~eki~~ie~~~~~~~k~k~Te~~~~~lk~kla~lr~el~~~~~ 54 (376)
T 4a9a_A 12 VEKIKAIEDEMARTQKNKATSFHLGQLKAKLAKLRRELLTSAS 54 (376)
T ss_dssp HHHHHHHHHHHHHSCCSTTTHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 46777888877521 12467789999999999986443
No 344
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=23.07 E-value=97 Score=18.90 Aligned_cols=10 Identities=10% Similarity=0.375 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 041503 85 KELEHTQLRS 94 (99)
Q Consensus 85 ~El~~~~~~~ 94 (99)
.+|+++.+.+
T Consensus 47 ~~LKk~KL~L 56 (76)
T 1zhc_A 47 SHMKKQKLKL 56 (76)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 345
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.99 E-value=1.2e+02 Score=27.03 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041503 68 KLTLEIERLSDKFRLLHKE 86 (99)
Q Consensus 68 e~~~ei~~l~~k~~~l~~E 86 (99)
++.++++.|+++++++.+|
T Consensus 988 ~L~~e~~~l~~~~~~~~ke 1006 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTE 1006 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333
No 346
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.95 E-value=1.3e+02 Score=22.89 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 61 LLVEEVRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 61 ~l~~ei~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
.++.+++.+....+.|.+..+.++.||.+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~ 86 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLA 86 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544
No 347
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=22.94 E-value=26 Score=22.33 Aligned_cols=34 Identities=15% Similarity=0.356 Sum_probs=20.8
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEec
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWA 49 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~ 49 (99)
--| .||..- .++...-.-|---..|++|.+++.+
T Consensus 31 y~C-rCGd~F--~it~edL~~ge~iv~C~sCSL~I~V 64 (83)
T 1wge_A 31 YPC-PCGDNF--AITKEDLENGEDVATCPSCSLIIKV 64 (83)
T ss_dssp ECC-SSSSCE--EEEHHHHHTTCCEEECTTTCCEEEE
T ss_pred EeC-CCCCEE--EECHHHHhCCCEEEECCCCceEEEE
Confidence 558 588763 2222222234467889999987765
No 348
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=22.88 E-value=1.4e+02 Score=18.31 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 041503 62 LVEEVRKLTLEIERL 76 (99)
Q Consensus 62 l~~ei~e~~~ei~~l 76 (99)
+++++.++..++++.
T Consensus 17 lE~eL~~~r~e~~~q 31 (74)
T 2xv5_A 17 KEREMAEMRARMQQQ 31 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 349
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.83 E-value=1.3e+02 Score=18.03 Aligned_cols=29 Identities=7% Similarity=0.121 Sum_probs=13.3
Q ss_pred hhhHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 041503 56 NEKIDLLVEE---VRKLTLEIERLSDKFRLLH 84 (99)
Q Consensus 56 ~~k~~~l~~e---i~e~~~ei~~l~~k~~~l~ 84 (99)
+.|.+.|..= |..|..++..|..++..|+
T Consensus 46 ~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 46 ASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454444332 3455455555554444443
No 350
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=22.79 E-value=60 Score=22.88 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 64 EEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 64 ~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
+|+.++..+++.|..+++..++++.
T Consensus 2 ~e~~~l~~~~~~l~~~~~~~~~~~~ 26 (340)
T 1got_B 2 SELDQLRQEAEQLKNQIRDARKACA 26 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3556666666666666666655544
No 351
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=22.73 E-value=1.2e+02 Score=19.42 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041503 69 LTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 69 ~~~ei~~l~~k~~~l~~El~~ 89 (99)
+..++...+.++..|+.||.+
T Consensus 61 V~~eL~~sn~kl~~L~~eL~e 81 (86)
T 1cxz_B 61 VELLLRGSSRRLDLLHQQLQE 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566666677777777654
No 352
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.71 E-value=1.7e+02 Score=19.33 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
|..+..++++++.+++.|+.++..
T Consensus 34 v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 34 VERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 353
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.70 E-value=31 Score=14.89 Aligned_cols=8 Identities=25% Similarity=0.995 Sum_probs=6.1
Q ss_pred eeeCCCCC
Q 041503 37 FWKCRVCK 44 (99)
Q Consensus 37 Fy~C~~C~ 44 (99)
.|.|+.|+
T Consensus 3 ~~~C~~C~ 10 (27)
T 2kvh_A 3 PFSCSLCP 10 (27)
T ss_dssp CEECSSSS
T ss_pred CccCCCcC
Confidence 57888776
No 354
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.55 E-value=33 Score=14.68 Aligned_cols=8 Identities=50% Similarity=0.974 Sum_probs=6.0
Q ss_pred eeeCCCCC
Q 041503 37 FWKCRVCK 44 (99)
Q Consensus 37 Fy~C~~C~ 44 (99)
.|.|+.|+
T Consensus 2 ~~~C~~C~ 9 (29)
T 2m0f_A 2 PLKCRECG 9 (29)
T ss_dssp CEECTTTS
T ss_pred CccCCCCC
Confidence 47888776
No 355
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=22.52 E-value=1.7e+02 Score=20.34 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 62 LVEEVRKLTLEIERLSDKFRLLHKELEHTQ 91 (99)
Q Consensus 62 l~~ei~e~~~ei~~l~~k~~~l~~El~~~~ 91 (99)
|..+...+-..+..|++.++.|++++-+.+
T Consensus 19 L~~~sd~LvtkVDDLQD~VE~LRkDV~~Rg 48 (141)
T 3okq_A 19 LGDLSDTLLSKVDDLQDVIEIMRKDVAERR 48 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 333455555666666666666666665543
No 356
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=22.52 E-value=32 Score=14.90 Aligned_cols=8 Identities=25% Similarity=0.812 Sum_probs=6.0
Q ss_pred eeeCCCCC
Q 041503 37 FWKCRVCK 44 (99)
Q Consensus 37 Fy~C~~C~ 44 (99)
.|.|+.|+
T Consensus 2 ~~~C~~C~ 9 (29)
T 1rik_A 2 KFACPECP 9 (29)
T ss_dssp CEECSSSS
T ss_pred CccCCCCC
Confidence 47888876
No 357
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.38 E-value=57 Score=15.91 Aligned_cols=12 Identities=33% Similarity=0.888 Sum_probs=9.2
Q ss_pred CCcceeeCCCCC
Q 041503 33 PNRKFWKCRVCK 44 (99)
Q Consensus 33 PgR~Fy~C~~C~ 44 (99)
.|.+.|.|+.|+
T Consensus 8 ~~~k~~~C~~C~ 19 (44)
T 2emb_A 8 HTRKRYECSKCQ 19 (44)
T ss_dssp CCCSSEECTTTC
T ss_pred CCCCCeECCCCC
Confidence 456679999886
No 358
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=22.35 E-value=1.5e+02 Score=19.95 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELEH 89 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~~ 89 (99)
.|.+++..|..|+.+|.++.+|+..
T Consensus 33 ~v~~~~~~in~L~~~I~~~~k~a~a 57 (129)
T 2gr7_A 33 GVTNLAGQVNNLEGKVNKVGKRADA 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888877653
No 359
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.11 E-value=55 Score=15.69 Aligned_cols=12 Identities=17% Similarity=0.886 Sum_probs=8.9
Q ss_pred CCcceeeCCCCC
Q 041503 33 PNRKFWKCRVCK 44 (99)
Q Consensus 33 PgR~Fy~C~~C~ 44 (99)
.|.+.|.|+.|+
T Consensus 6 ~~~k~~~C~~C~ 17 (41)
T 2ept_A 6 SGQRVYECQECG 17 (41)
T ss_dssp CCCCCEECSSSC
T ss_pred CCCCCeECCCCC
Confidence 455678999886
No 360
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.98 E-value=36 Score=14.63 Aligned_cols=9 Identities=33% Similarity=0.944 Sum_probs=6.6
Q ss_pred ceeeCCCCC
Q 041503 36 KFWKCRVCK 44 (99)
Q Consensus 36 ~Fy~C~~C~ 44 (99)
+.|.|+.|+
T Consensus 2 k~~~C~~C~ 10 (30)
T 2m0d_A 2 KPYQCDYCG 10 (30)
T ss_dssp CCEECTTTC
T ss_pred cCccCCCCC
Confidence 358888876
No 361
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=21.96 E-value=1.1e+02 Score=25.06 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=22.0
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 63 VEE-VRKLTLEIERLSDKFRLLHKELEHTQ 91 (99)
Q Consensus 63 ~~e-i~e~~~ei~~l~~k~~~l~~El~~~~ 91 (99)
.++ +++++.+|+.|.++..++..+|....
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556 77888888888888888877776543
No 362
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=21.91 E-value=1.5e+02 Score=18.38 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 58 KIDLLVEEVRKLTLEIERLSDKFRLLHKELE 88 (99)
Q Consensus 58 k~~~l~~ei~e~~~ei~~l~~k~~~l~~El~ 88 (99)
..+.++++|++++.+|-.|-++=..+..++-
T Consensus 13 ~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig 43 (90)
T 2vkl_A 13 EIDTLREEIDRLDAEILALVKRRAEVSKAIG 43 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999988887655444444443
No 363
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=21.91 E-value=2.1e+02 Score=20.62 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 66 VRKLTLEIERLSDKFRLLHKELEHTQL 92 (99)
Q Consensus 66 i~e~~~ei~~l~~k~~~l~~El~~~~~ 92 (99)
++.++..|+.+++++++| +++++.-|
T Consensus 388 l~~ld~~i~~~~~~~~~l-~~~k~~Ll 413 (425)
T 1yf2_A 388 LSSVDKSIELKKQKKEKL-QRMKKKIM 413 (425)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456666677666666666 45554433
No 364
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.82 E-value=31 Score=15.08 Aligned_cols=8 Identities=25% Similarity=1.082 Sum_probs=6.0
Q ss_pred eeeCCCCC
Q 041503 37 FWKCRVCK 44 (99)
Q Consensus 37 Fy~C~~C~ 44 (99)
.|.|+.|+
T Consensus 2 ~~~C~~C~ 9 (30)
T 1paa_A 2 AYACGLCN 9 (30)
T ss_dssp CSBCTTTC
T ss_pred CcCCcccC
Confidence 47888776
No 365
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=21.66 E-value=28 Score=18.02 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=8.4
Q ss_pred CcceeeCCCCC
Q 041503 34 NRKFWKCRVCK 44 (99)
Q Consensus 34 gR~Fy~C~~C~ 44 (99)
|.+.|.|+.|+
T Consensus 5 gekp~~C~~Cg 15 (36)
T 1fv5_A 5 KPARFMCLPCG 15 (36)
T ss_dssp SCCCCEETTTT
T ss_pred CccCeECCCCC
Confidence 45678999886
No 366
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.62 E-value=33 Score=14.78 Aligned_cols=8 Identities=38% Similarity=1.082 Sum_probs=5.7
Q ss_pred eeeCCCCC
Q 041503 37 FWKCRVCK 44 (99)
Q Consensus 37 Fy~C~~C~ 44 (99)
.|.|+.|+
T Consensus 2 ~~~C~~C~ 9 (29)
T 1ard_A 2 SFVCEVCT 9 (29)
T ss_dssp CCBCTTTC
T ss_pred CeECCCCC
Confidence 47788775
No 367
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=21.57 E-value=35 Score=26.15 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=15.6
Q ss_pred cccc--CccccceeeeecCCCCCCcceeeCCCCCe
Q 041503 13 QVCN--ECGGQIELFTSHTTKNPNRKFWKCRVCKN 45 (99)
Q Consensus 13 ~~Cp--~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~f 45 (99)
.-|+ .||.++...+-. ||.-|=||.|+-
T Consensus 248 ~pC~~~~CG~~I~~~~~~-----gR~t~~CP~CQ~ 277 (310)
T 3twl_A 248 KPGKAFVDGKKIDFITAG-----GRTTAYVPELQK 277 (310)
T ss_dssp CTTSCEETTEECEECCE-----------ECTTTCC
T ss_pred CCCCCCCCCCeEEEEEEC-----CcccEECCCCcC
Confidence 3476 899876554432 699999999983
No 368
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.28 E-value=1.8e+02 Score=19.02 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041503 65 EVRKLTLEIERLSDKFRLLHKELEHTQLRSK 95 (99)
Q Consensus 65 ei~e~~~ei~~l~~k~~~l~~El~~~~~~~~ 95 (99)
++..+..+|+.|+.....|.++.+.--++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888899998888888888777666554
No 369
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.11 E-value=53 Score=16.35 Aligned_cols=13 Identities=15% Similarity=0.470 Sum_probs=9.5
Q ss_pred CCCcceeeCCCCC
Q 041503 32 NPNRKFWKCRVCK 44 (99)
Q Consensus 32 NPgR~Fy~C~~C~ 44 (99)
..+.+.|.|+.|+
T Consensus 7 h~~~k~~~C~~C~ 19 (46)
T 2eom_A 7 GHGERGHRCSDCG 19 (46)
T ss_dssp CCCCSSCCCSSSC
T ss_pred CCCCCCcCCCCCC
Confidence 3456679999886
No 370
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.98 E-value=90 Score=21.95 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=27.2
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEeccC
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWAED 51 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~De 51 (99)
+.||.|+.+=..++-... -+--|-+|..|+...=+|.
T Consensus 104 VlC~~C~sPdT~L~~~~~--~r~~~l~C~ACGa~~~V~~ 140 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPK--KQTIGNSCKACGYRGMLDT 140 (157)
T ss_dssp TSCTTTCCSCCEEEEETT--TTEEEEECSSSCCEEECCC
T ss_pred EECCCCCCCccEEEEecC--CCEEEEEccCCCCCCcccc
Confidence 899999997666664211 2356788999998887775
No 371
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.59 E-value=69 Score=19.48 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=20.8
Q ss_pred ccccCccccceeeeecCCCCCCcceeeCCCCCeeEec
Q 041503 13 QVCNECGGQIELFTSHTTKNPNRKFWKCRVCKNFQWA 49 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~~C~fF~W~ 49 (99)
..||.|+.+...-. ......|+.|+...=.
T Consensus 9 L~CP~ck~~L~~~~-------~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 9 LVCPVCKGRLEFQR-------AQAELVCNADRLAFPV 38 (70)
T ss_dssp CBCTTTCCBEEEET-------TTTEEEETTTTEEEEE
T ss_pred eECCCCCCcCEEeC-------CCCEEEcCCCCceecC
Confidence 78999999765432 3466789989854433
No 372
>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1
Probab=20.56 E-value=32 Score=25.66 Aligned_cols=13 Identities=31% Similarity=0.999 Sum_probs=10.4
Q ss_pred cceeeCCCCCeeE
Q 041503 35 RKFWKCRVCKNFQ 47 (99)
Q Consensus 35 R~Fy~C~~C~fF~ 47 (99)
.+||+|..|+-+.
T Consensus 152 WQFYKCe~CgKYv 164 (226)
T 2czr_A 152 WQFYKCEECGKYV 164 (226)
T ss_dssp EEEEECTTTCCEE
T ss_pred EEEEehhhcCcee
Confidence 5799999998554
No 373
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=20.56 E-value=41 Score=16.17 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=9.1
Q ss_pred CCcceeeCCCCC
Q 041503 33 PNRKFWKCRVCK 44 (99)
Q Consensus 33 PgR~Fy~C~~C~ 44 (99)
.|.+.|.|+.|+
T Consensus 7 ~~~~~~~C~~C~ 18 (42)
T 2epc_A 7 GGETPYLCGQCG 18 (42)
T ss_dssp CSSCCEECSSSC
T ss_pred CCCCCeECCCCC
Confidence 355679999886
No 374
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=20.46 E-value=1.5e+02 Score=24.28 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041503 60 DLLVEEVRKLTLEIERLSDKFRLLHKELEHTQ 91 (99)
Q Consensus 60 ~~l~~ei~e~~~ei~~l~~k~~~l~~El~~~~ 91 (99)
..+..++..+..+|+.++++..+++.+|.+..
T Consensus 176 ~~l~~eV~pLk~eLk~lE~eL~e~e~eL~~ll 207 (536)
T 3err_A 176 ADMLKRVEPLRNELQKLEDDAKDNQQKLEALL 207 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556777777788888877777777776543
No 375
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.45 E-value=29 Score=15.21 Aligned_cols=8 Identities=25% Similarity=1.231 Sum_probs=6.2
Q ss_pred eeeCCCCC
Q 041503 37 FWKCRVCK 44 (99)
Q Consensus 37 Fy~C~~C~ 44 (99)
.|.|+.|+
T Consensus 3 ~~~C~~C~ 10 (27)
T 2kvg_A 3 PYRCPLCR 10 (27)
T ss_dssp TEEETTTT
T ss_pred CcCCCCCC
Confidence 47888886
No 376
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=20.43 E-value=82 Score=18.59 Aligned_cols=24 Identities=21% Similarity=0.602 Sum_probs=17.6
Q ss_pred cccccCccccceeeeecCCCCCCcceeeCC-CCC
Q 041503 12 LQVCNECGGQIELFTSHTTKNPNRKFWKCR-VCK 44 (99)
Q Consensus 12 ~~~Cp~Cg~~~~~~tS~t~~NPgR~Fy~C~-~C~ 44 (99)
...||.|+++ -||++..-.|- .|.
T Consensus 8 ~~~C~~C~~p---------~~~~~~mI~CD~~C~ 32 (65)
T 2vpb_A 8 VYPCGICTNE---------VNDDQDAILCEASCQ 32 (65)
T ss_dssp -CBCTTTCSB---------CCTTSCEEEBTTTTC
T ss_pred cCcCccCCCc---------cCCCCCeEecccCcc
Confidence 3567777765 45788888998 898
No 377
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=20.42 E-value=40 Score=16.27 Aligned_cols=12 Identities=17% Similarity=0.648 Sum_probs=8.9
Q ss_pred CCcceeeCCCCC
Q 041503 33 PNRKFWKCRVCK 44 (99)
Q Consensus 33 PgR~Fy~C~~C~ 44 (99)
.|.+.|.|+.|+
T Consensus 6 ~~~k~~~C~~C~ 17 (42)
T 2el5_A 6 SGENPYECSECG 17 (42)
T ss_dssp SSCCSEECSSSC
T ss_pred CCCCCccCCCcC
Confidence 355679999886
No 378
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.32 E-value=45 Score=16.46 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=9.4
Q ss_pred CCcceeeCCCCC
Q 041503 33 PNRKFWKCRVCK 44 (99)
Q Consensus 33 PgR~Fy~C~~C~ 44 (99)
.+.+.|.|+.|+
T Consensus 8 ~~~k~~~C~~C~ 19 (44)
T 2epv_A 8 SGEKPYECNECG 19 (44)
T ss_dssp CCCCSEECSSSC
T ss_pred CCCcCeECCCCC
Confidence 456779999886
No 379
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.20 E-value=55 Score=16.20 Aligned_cols=12 Identities=25% Similarity=0.963 Sum_probs=8.9
Q ss_pred CCcceeeCCCCC
Q 041503 33 PNRKFWKCRVCK 44 (99)
Q Consensus 33 PgR~Fy~C~~C~ 44 (99)
.+.+.|.|+.|+
T Consensus 8 ~~~k~~~C~~C~ 19 (46)
T 2eoh_A 8 SGKKPYECKECR 19 (46)
T ss_dssp CCSCSCCCSSSC
T ss_pred CCCCCcCCCCcC
Confidence 456679999886
No 380
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.17 E-value=40 Score=21.44 Aligned_cols=15 Identities=13% Similarity=0.749 Sum_probs=11.8
Q ss_pred ccccCccccceeeee
Q 041503 13 QVCNECGGQIELFTS 27 (99)
Q Consensus 13 ~~Cp~Cg~~~~~~tS 27 (99)
..||.||.++.++.+
T Consensus 32 afCPeCgq~Le~lkA 46 (81)
T 2jrp_A 32 ALCPDCRQPLQVLKA 46 (81)
T ss_dssp EECSSSCSCCCEEEE
T ss_pred ccCcchhhHHHHHHh
Confidence 689999998877543
No 381
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.16 E-value=66 Score=15.88 Aligned_cols=12 Identities=17% Similarity=0.661 Sum_probs=9.2
Q ss_pred CCcceeeCCCCC
Q 041503 33 PNRKFWKCRVCK 44 (99)
Q Consensus 33 PgR~Fy~C~~C~ 44 (99)
.|.+.|.|+.|+
T Consensus 8 ~~~k~~~C~~C~ 19 (46)
T 2em4_A 8 TGQRPYECIECG 19 (46)
T ss_dssp CCSSSEECSSSC
T ss_pred CCCcCcCCCCCC
Confidence 456679999886
No 382
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=20.14 E-value=1.1e+02 Score=18.48 Aligned_cols=11 Identities=45% Similarity=0.809 Sum_probs=6.8
Q ss_pred HHHHHHhhcCC
Q 041503 89 HTQLRSKYGLS 99 (99)
Q Consensus 89 ~~~~~~~~~~~ 99 (99)
+..|-..|||+
T Consensus 51 RkkL~~~~~~~ 61 (61)
T 2e62_A 51 RKRLEVDYGLS 61 (61)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHhcCCC
Confidence 34455778875
No 383
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.09 E-value=2.5e+02 Score=20.19 Aligned_cols=8 Identities=13% Similarity=-0.147 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 041503 76 LSDKFRLL 83 (99)
Q Consensus 76 l~~k~~~l 83 (99)
++.++..+
T Consensus 58 ~~~~~~~~ 65 (256)
T 3na7_A 58 LKLQVSKN 65 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 384
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1
Probab=20.02 E-value=1.1e+02 Score=16.11 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041503 62 LVEEVRKLTLEIERLSDKFR 81 (99)
Q Consensus 62 l~~ei~e~~~ei~~l~~k~~ 81 (99)
++..|+.++.+|..|+++-+
T Consensus 6 ie~~iedi~~ei~~l~~kr~ 25 (33)
T 1r48_A 6 IEQKIDDIDHEIADLQAKRT 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 34456677777777764433
No 385
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=20.01 E-value=1.2e+02 Score=16.56 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 041503 71 LEIERLSDKFRLL 83 (99)
Q Consensus 71 ~ei~~l~~k~~~l 83 (99)
...++|-.+...|
T Consensus 8 ~KVEeLl~~~~~L 20 (36)
T 1kd8_B 8 AKVEELKSKLWHL 20 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHH
Confidence 3333443333333
Done!