BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041505
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 59 IEELPSAIECLYKLLHLDLEYCESLNSLPSGXXXXXXXXXXXXXXXSNLQRLP----DEL 114
+ +PS I K LDL+ L+SLPS + LQ LP EL
Sbjct: 28 LTAIPSNIPADTK--KLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84
Query: 115 GNLEALWISREAGVISRWLPENI-GQLSSLGKLDLQKNNFERIPESVIQ-LSKLGRLYLR 172
NLE LW++ + LP + QL +L +L L +N + +P V L+KL L L
Sbjct: 85 KNLETLWVTDNK---LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141
Query: 173 YWERLQSLPK 182
Y E LQSLPK
Sbjct: 142 YNE-LQSLPK 150
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 16/162 (9%)
Query: 26 VVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNS 85
++ N D KS++ + ++ +L L G + ++ SA++ L L +L L L S
Sbjct: 46 IIANNSDIKSVQGIQYLPNVRYLA----LGGNKLHDI-SALKELTNLTYLILT-GNQLQS 99
Query: 86 LPSGXXXXXXXXXXXXXXXSNLQRLPD----ELGNLEALWISREAGVISRWLPENI-GQL 140
LP+G + LQ LPD +L NL L++ + LP+ + +L
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQ---LQSLPKGVFDKL 156
Query: 141 SSLGKLDLQKNNFERIPESVI-QLSKLGRLYLRYWERLQSLP 181
++L +LDL N + +PE V +L++L +L L +L+S+P
Sbjct: 157 TNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND-NQLKSVP 197
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 16/162 (9%)
Query: 26 VVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNS 85
++ N D KS++ + ++ +L L G + ++ SA++ L L +L L L S
Sbjct: 46 IIANNSDIKSVQGIQYLPNVRYLA----LGGNKLHDI-SALKELTNLTYLILT-GNQLQS 99
Query: 86 LPSGXXXXXXXXXXXXXXXSNLQRLPD----ELGNLEALWISREAGVISRWLPENI-GQL 140
LP+G + LQ LPD +L NL L ++ + LP+ + +L
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ---LQSLPKGVFDKL 156
Query: 141 SSLGKLDLQKNNFERIPESVI-QLSKLGRLYLRYWERLQSLP 181
++L +LDL N + +PE V +L++L L L Y +L+S+P
Sbjct: 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL-YQNQLKSVP 197
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 110 LPDELGNLEALWI-SREAGVISRWLPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLG 167
+P E+G++ L+I + IS +P+ +G L L LDL N + RIP+++ L+ L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 168 RLYLRYWERLQSLPKL 183
+ L +P++
Sbjct: 705 EIDLSNNNLSGPIPEM 720
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 110 LPDELGNLEALWI-SREAGVISRWLPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLG 167
+P E+G++ L+I + IS +P+ +G L L LDL N + RIP+++ L+ L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 168 RLYLRYWERLQSLPKL 183
+ L +P++
Sbjct: 708 EIDLSNNNLSGPIPEM 723
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 27 VLNLRDCKSLKSL--------PAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLE 78
+ NL++ KSLK PA HL L+ELDL TA+ P L L L+
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261
Query: 79 YCESLNSLPSGXXXXXXXXXXXXXXXSNLQRLPDELGNLEA 119
C +L +LP NL RLP + L A
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 133 LPENI-GQLSSLGKLDLQKNNFERIPESVI-QLSKLGRLYLRYWERLQSLP 181
LP + +L+ L KL L +N + +P+ V +L+KL LYL + +LQSLP
Sbjct: 43 LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL-HENKLQSLP 92
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 46 EFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPS 88
+FL L LNG ++ ELP+ I+ L L LDL + L SLP+
Sbjct: 247 DFLTRL-YLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPA 287
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 32 DCKSLK--SLPAGIHLEFLKELDLLNGTAIEEL-PSAIECLYKLLHLDLEYCESLNSLPS 88
DC+S + S+PAGI ++ L+ I +L P + L L L L L +LP
Sbjct: 25 DCRSKRHASVPAGIPTN--AQILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPV 81
Query: 89 GXXXXXXXXXXXXXXXSNLQRLP----DELGNLEALWISREAGVISRWLPENIGQLSSLG 144
G + L LP D L +L+ L++ LP I +L+ L
Sbjct: 82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT---ELPRGIERLTHLT 138
Query: 145 KLDLQKNNFERIPESVI-QLSKLGRLYL 171
L L +N + IP +LS L YL
Sbjct: 139 HLALDQNQLKSIPHGAFDRLSSLTHAYL 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,866,191
Number of Sequences: 62578
Number of extensions: 241451
Number of successful extensions: 462
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 17
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)