Query 041505
Match_columns 248
No_of_seqs 144 out of 2074
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:51:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2.9E-22 6.2E-27 187.6 12.0 206 15-225 156-369 (968)
2 PLN00113 leucine-rich repeat r 99.9 5E-22 1.1E-26 185.9 11.8 235 8-245 172-436 (968)
3 PLN03210 Resistant to P. syrin 99.8 7.6E-18 1.7E-22 159.3 15.5 212 7-228 618-862 (1153)
4 KOG0444 Cytoskeletal regulator 99.7 1.5E-19 3.2E-24 153.6 -0.2 213 8-228 86-307 (1255)
5 KOG4194 Membrane glycoprotein 99.7 2.5E-19 5.4E-24 150.9 -0.4 222 7-235 180-439 (873)
6 KOG4194 Membrane glycoprotein 99.7 1.1E-17 2.3E-22 141.2 5.2 145 5-153 83-233 (873)
7 KOG0444 Cytoskeletal regulator 99.7 2.5E-18 5.4E-23 146.3 -0.3 174 4-183 107-286 (1255)
8 PLN03210 Resistant to P. syrin 99.7 3.9E-16 8.4E-21 147.9 13.9 196 2-202 660-910 (1153)
9 KOG0617 Ras suppressor protein 99.7 1.3E-18 2.8E-23 125.8 -2.5 173 12-195 23-200 (264)
10 KOG0472 Leucine-rich repeat pr 99.6 8.5E-18 1.9E-22 136.0 -4.5 213 5-231 96-316 (565)
11 KOG0617 Ras suppressor protein 99.6 1E-17 2.3E-22 121.2 -4.5 155 6-163 39-195 (264)
12 KOG0472 Leucine-rich repeat pr 99.6 6.6E-17 1.4E-21 130.9 -1.5 209 8-226 191-542 (565)
13 PRK15370 E3 ubiquitin-protein 99.6 6E-15 1.3E-19 132.6 10.4 155 24-195 221-377 (754)
14 PRK15387 E3 ubiquitin-protein 99.6 2.9E-14 6.3E-19 127.9 12.0 83 142-232 383-465 (788)
15 cd00116 LRR_RI Leucine-rich re 99.6 4.9E-15 1.1E-19 122.1 5.7 218 14-233 42-299 (319)
16 KOG4237 Extracellular matrix p 99.5 2.1E-16 4.5E-21 127.7 -3.3 220 4-227 71-361 (498)
17 cd00116 LRR_RI Leucine-rich re 99.5 6.3E-15 1.4E-19 121.5 4.2 237 8-247 6-288 (319)
18 PRK15370 E3 ubiquitin-protein 99.5 2.4E-14 5.1E-19 128.8 8.0 204 7-230 227-433 (754)
19 KOG0618 Serine/threonine phosp 99.5 7.1E-15 1.5E-19 129.9 -0.1 95 8-105 29-125 (1081)
20 KOG0618 Serine/threonine phosp 99.3 7.1E-14 1.5E-18 123.7 -1.7 211 3-223 244-487 (1081)
21 PRK15387 E3 ubiquitin-protein 99.3 4.4E-11 9.6E-16 107.7 12.0 195 5-227 206-417 (788)
22 KOG4237 Extracellular matrix p 99.2 6.4E-13 1.4E-17 107.8 -3.0 138 9-152 55-199 (498)
23 KOG0532 Leucine-rich repeat (L 99.1 5E-12 1.1E-16 107.0 -0.8 163 6-175 104-271 (722)
24 KOG1909 Ran GTPase-activating 99.0 7.3E-11 1.6E-15 94.5 2.1 210 15-228 22-286 (382)
25 KOG0532 Leucine-rich repeat (L 99.0 1.1E-11 2.5E-16 104.9 -3.6 165 5-178 80-248 (722)
26 PF14580 LRR_9: Leucine-rich r 99.0 5.8E-10 1.3E-14 83.2 5.5 125 22-172 18-148 (175)
27 KOG3207 Beta-tubulin folding c 99.0 1.5E-10 3.3E-15 95.2 2.3 205 18-227 116-341 (505)
28 PLN03150 hypothetical protein; 99.0 1.2E-09 2.7E-14 97.7 8.0 91 25-115 420-511 (623)
29 KOG4658 Apoptotic ATPase [Sign 99.0 2E-10 4.3E-15 105.4 2.7 92 12-104 559-652 (889)
30 COG4886 Leucine-rich repeat (L 99.0 5.2E-10 1.1E-14 95.1 4.1 148 20-174 113-265 (394)
31 PLN03150 hypothetical protein; 98.9 5.3E-09 1.2E-13 93.6 8.9 103 72-176 420-527 (623)
32 COG4886 Leucine-rich repeat (L 98.9 2.2E-09 4.7E-14 91.4 5.4 190 27-227 97-292 (394)
33 PF14580 LRR_9: Leucine-rich r 98.9 3.7E-09 8.1E-14 78.9 5.0 129 36-193 9-148 (175)
34 KOG1259 Nischarin, modulator o 98.8 1.4E-09 3.1E-14 86.0 1.8 127 94-228 284-415 (490)
35 KOG1909 Ran GTPase-activating 98.7 2.3E-09 5.1E-14 86.0 0.7 203 44-247 28-280 (382)
36 PF13855 LRR_8: Leucine rich r 98.7 2E-08 4.4E-13 61.7 3.9 57 47-104 2-59 (61)
37 KOG3207 Beta-tubulin folding c 98.7 1.1E-08 2.5E-13 84.5 3.4 156 19-176 142-313 (505)
38 KOG1259 Nischarin, modulator o 98.7 2.9E-09 6.3E-14 84.3 -1.0 126 44-176 282-411 (490)
39 PF13855 LRR_8: Leucine rich r 98.6 5.6E-08 1.2E-12 59.7 4.2 58 23-81 1-60 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.6 4.2E-08 9E-13 90.4 4.2 101 23-124 545-651 (889)
41 KOG2120 SCF ubiquitin ligase, 98.4 4.9E-09 1.1E-13 82.8 -4.9 41 66-106 206-246 (419)
42 KOG2120 SCF ubiquitin ligase, 98.4 1.5E-08 3.3E-13 80.1 -2.5 175 23-197 185-375 (419)
43 COG5238 RNA1 Ran GTPase-activa 98.4 1.1E-07 2.4E-12 74.4 1.7 214 10-227 17-287 (388)
44 KOG0531 Protein phosphatase 1, 98.4 7.2E-08 1.6E-12 82.5 0.5 101 19-124 91-195 (414)
45 COG5238 RNA1 Ran GTPase-activa 98.3 3.5E-07 7.6E-12 71.6 2.9 211 13-228 48-319 (388)
46 PRK15386 type III secretion pr 98.3 5.5E-06 1.2E-10 69.6 8.9 157 19-195 48-210 (426)
47 KOG0531 Protein phosphatase 1, 98.2 2.3E-07 5E-12 79.5 -0.3 217 4-227 99-320 (414)
48 PRK15386 type III secretion pr 98.1 1.2E-05 2.7E-10 67.5 8.1 135 44-195 50-187 (426)
49 PF12799 LRR_4: Leucine Rich r 98.0 6.1E-06 1.3E-10 46.8 3.2 36 141-176 1-36 (44)
50 KOG1859 Leucine-rich repeat pr 97.9 4.4E-07 9.4E-12 79.9 -4.1 153 16-176 102-291 (1096)
51 KOG2982 Uncharacterized conser 97.9 2.3E-06 5.1E-11 68.0 -0.5 179 44-225 69-290 (418)
52 KOG2982 Uncharacterized conser 97.8 4.1E-05 8.9E-10 61.1 5.4 46 136-181 219-266 (418)
53 KOG1859 Leucine-rich repeat pr 97.8 6E-06 1.3E-10 73.0 0.0 96 133-235 179-278 (1096)
54 KOG3665 ZYG-1-like serine/thre 97.7 2.7E-05 5.8E-10 70.4 3.2 133 94-228 122-266 (699)
55 KOG4579 Leucine-rich repeat (L 97.6 8.5E-06 1.8E-10 57.6 -0.9 82 19-103 49-132 (177)
56 PF12799 LRR_4: Leucine Rich r 97.6 8.8E-05 1.9E-09 42.0 3.4 33 47-80 2-34 (44)
57 KOG3665 ZYG-1-like serine/thre 97.6 3E-05 6.5E-10 70.1 1.7 147 23-171 122-282 (699)
58 KOG4341 F-box protein containi 97.5 1.2E-05 2.6E-10 66.6 -2.0 215 4-221 195-435 (483)
59 KOG1644 U2-associated snRNP A' 97.3 0.0007 1.5E-08 51.2 5.5 79 25-106 21-100 (233)
60 KOG1644 U2-associated snRNP A' 97.1 0.0008 1.7E-08 50.9 4.2 79 24-105 43-124 (233)
61 KOG4341 F-box protein containi 97.0 2.9E-05 6.3E-10 64.4 -4.0 84 139-224 292-384 (483)
62 KOG4579 Leucine-rich repeat (L 97.0 6.2E-05 1.3E-09 53.3 -1.9 82 5-89 58-141 (177)
63 KOG2739 Leucine-rich acidic nu 96.6 0.0012 2.6E-08 51.8 2.1 86 22-108 42-130 (260)
64 PF00560 LRR_1: Leucine Rich R 96.4 0.0016 3.6E-08 30.7 1.0 21 142-162 1-21 (22)
65 KOG3864 Uncharacterized conser 96.3 0.0018 3.8E-08 49.0 1.3 112 133-246 93-213 (221)
66 KOG1947 Leucine rich repeat pr 96.1 0.00086 1.9E-08 58.4 -1.5 35 45-79 187-223 (482)
67 PF13306 LRR_5: Leucine rich r 95.7 0.067 1.5E-06 37.5 7.3 56 19-78 8-66 (129)
68 KOG2123 Uncharacterized conser 95.7 0.00091 2E-08 53.1 -2.6 96 69-191 18-123 (388)
69 KOG2739 Leucine-rich acidic nu 95.6 0.011 2.4E-07 46.4 3.1 63 114-176 64-128 (260)
70 KOG1947 Leucine rich repeat pr 95.6 0.0023 5E-08 55.7 -0.9 106 2-107 191-308 (482)
71 PF13504 LRR_7: Leucine rich r 95.6 0.0086 1.9E-07 26.3 1.3 16 142-157 2-17 (17)
72 PF00560 LRR_1: Leucine Rich R 95.1 0.011 2.5E-07 27.8 1.0 17 96-113 2-18 (22)
73 KOG2123 Uncharacterized conser 94.8 0.0025 5.4E-08 50.7 -2.6 98 116-219 20-124 (388)
74 PF13306 LRR_5: Leucine rich r 94.8 0.14 3E-06 35.9 6.5 114 44-167 10-129 (129)
75 KOG0473 Leucine-rich repeat pr 94.1 0.0014 3E-08 50.8 -5.5 99 6-107 24-124 (326)
76 smart00369 LRR_TYP Leucine-ric 93.3 0.088 1.9E-06 25.7 2.1 20 140-159 1-20 (26)
77 smart00370 LRR Leucine-rich re 93.3 0.088 1.9E-06 25.7 2.1 20 140-159 1-20 (26)
78 KOG0473 Leucine-rich repeat pr 89.8 0.0057 1.2E-07 47.5 -6.6 77 4-82 46-123 (326)
79 KOG4308 LRR-containing protein 89.7 0.014 3.1E-07 50.9 -5.2 184 48-231 89-309 (478)
80 PF13516 LRR_6: Leucine Rich r 89.6 0.26 5.6E-06 23.4 1.5 21 212-232 2-22 (24)
81 KOG3864 Uncharacterized conser 89.4 0.095 2E-06 39.9 -0.3 80 24-103 102-185 (221)
82 smart00364 LRR_BAC Leucine-ric 84.8 0.62 1.4E-05 22.8 1.2 18 141-158 2-19 (26)
83 KOG4308 LRR-containing protein 84.4 0.03 6.5E-07 48.9 -6.1 163 12-176 104-302 (478)
84 smart00365 LRR_SD22 Leucine-ri 82.6 1.2 2.5E-05 21.9 1.7 16 141-156 2-17 (26)
85 smart00368 LRR_RI Leucine rich 77.0 2.2 4.7E-05 21.2 1.7 21 212-232 2-22 (28)
86 smart00367 LRR_CC Leucine-rich 74.3 2.5 5.4E-05 20.4 1.5 14 46-59 2-15 (26)
87 KOG3763 mRNA export factor TAP 62.7 3.7 8.1E-05 36.3 1.1 81 138-218 215-307 (585)
88 KOG3763 mRNA export factor TAP 36.2 20 0.00044 31.9 1.4 53 138-191 241-307 (585)
89 KOG4242 Predicted myosin-I-bin 35.0 1.5E+02 0.0032 26.3 6.2 87 142-228 355-456 (553)
90 smart00446 LRRcap occurring C- 22.0 50 0.0011 16.2 0.8 14 65-78 8-21 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=2.9e-22 Score=187.57 Aligned_cols=206 Identities=23% Similarity=0.255 Sum_probs=100.4
Q ss_pred hhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCC
Q 041505 15 LYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKL 93 (248)
Q Consensus 15 l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 93 (248)
+|..++.+++|++|++++|.+.+.+|..+ .+++|++|++++|.....+|..++++++|++|++++|.+.+..|..++.+
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 34445555555555555555444555544 55555555555555444455555555555555555555545555555555
Q ss_pred CCCcEEeccCccCCcccccccC---CCCceEecccCCcccccccccccCCCCcCeEEccCCcCc-ccchhhhccCCccee
Q 041505 94 KLLNYLTLNCCSNLQRLPDELG---NLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRL 169 (248)
Q Consensus 94 ~~L~~L~l~~~~~~~~~~~~~~---~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp~~l~~~~~L~~L 169 (248)
++|++|++++|.+.+.+|..++ +++.|++.. |.+.+.+|..++++++|+.|++++|.+. .+|..+..+++|+.|
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ--NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcC--CeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence 5555555555554444444332 233444444 3344444555555555555555555542 344445555555555
Q ss_pred cccCccccccCCCC---CcccceeccccccccccchhhcccccccccccccccccCcch
Q 041505 170 YLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIE 225 (248)
Q Consensus 170 ~l~~n~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~ 225 (248)
++++|.+....|.. +++|+.|++++|.....++.. +..+++|+.++++.|.+.
T Consensus 314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN---LGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH---HhCCCCCcEEECCCCeeE
Confidence 55555444333322 244555555544322222221 223335555555555443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=5e-22 Score=185.94 Aligned_cols=235 Identities=25% Similarity=0.239 Sum_probs=166.7
Q ss_pred hccch-HhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCc
Q 041505 8 HALEL-FSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNS 85 (248)
Q Consensus 8 ~~~~l-~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 85 (248)
+.+.+ ..+|..++.+++|++|++++|.+.+.+|..+ .+++|++|++++|.....+|..++++++|++|++++|.+.+.
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence 33443 4567788888999999999988778888888 888999999988887778888888899999999988888788
Q ss_pred CCccccCCCCCcEEeccCccCCccccccc---CCCCceEecccCCcccccccccccCCCCcCeEEccCCcCc-ccchhhh
Q 041505 86 LPSGLCKLKLLNYLTLNCCSNLQRLPDEL---GNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFE-RIPESVI 161 (248)
Q Consensus 86 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp~~l~ 161 (248)
+|..++.+++|++|++++|.+.+.+|..+ .+++.|+++. |...+.+|..+.++++|+.|++++|.++ .+|..+.
T Consensus 252 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~--n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD--NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC--CeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 88888888889999988888877777654 4566777777 5666667777888888888888888774 5667777
Q ss_pred ccCCcceecccCccccccCCCC---Ccccceeccccccccccchhhcc---------------------ccccccccccc
Q 041505 162 QLSKLGRLYLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFS---------------------SFEARTRYFDL 217 (248)
Q Consensus 162 ~~~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~~---------------------~l~~l~~L~~l 217 (248)
.+++|+.|++++|.+...+|.. .++|+.|+++++......+..+. .+..+++|+.+
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 8888888888888766566643 35677777766533222222111 12245567777
Q ss_pred ccccCcchhchHHHHHHHHhhhhheecc
Q 041505 218 RYNYNWIEMRSEEFLKMLCKKLNFWQLH 245 (248)
Q Consensus 218 ~l~~n~i~~~~~~~~~~l~~~l~~~~~~ 245 (248)
++.+|.+....+..+..+ +.++...+.
T Consensus 410 ~L~~n~l~~~~p~~~~~l-~~L~~L~Ls 436 (968)
T PLN00113 410 RLQDNSFSGELPSEFTKL-PLVYFLDIS 436 (968)
T ss_pred ECcCCEeeeECChhHhcC-CCCCEEECc
Confidence 777776654433333322 334444443
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=7.6e-18 Score=159.34 Aligned_cols=212 Identities=31% Similarity=0.399 Sum_probs=154.3
Q ss_pred hhccchHhhhhhhcCCCCccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcC
Q 041505 7 DHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSL 86 (248)
Q Consensus 7 ~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 86 (248)
++.+.+..+|..+..+++|+.|+++++..++.+|....+++|++|++++|.....+|..++++++|+.|++++|.....+
T Consensus 618 L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 618 MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred CcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence 34556777777777788888888888776777775337888888888888878888888888888888888888777788
Q ss_pred CccccCCCCCcEEeccCccCCcccccccCCCCceEecccCCcccccccccc-----------------------------
Q 041505 87 PSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPENI----------------------------- 137 (248)
Q Consensus 87 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l----------------------------- 137 (248)
|..+ .+++|+.|++++|...+.+|....+++.|++.. +.+. .+|..+
T Consensus 698 p~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~--n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 698 PTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE--TAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred CCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCC--Cccc-cccccccccccccccccccchhhccccccccchhh
Confidence 7765 678888888888877777777667777777766 3222 233221
Q ss_pred -cCCCCcCeEEccCCcC-cccchhhhccCCcceecccCccccccCCCC--Ccccceeccccccccccchhhccccccccc
Q 041505 138 -GQLSSLGKLDLQKNNF-ERIPESVIQLSKLGRLYLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTR 213 (248)
Q Consensus 138 -~~~~~L~~L~l~~n~l-~~lp~~l~~~~~L~~L~l~~n~~~~~l~~~--~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~ 213 (248)
...++|+.|++++|.. ..+|..+.++++|+.|++++|...+.+|.. +++|+.|++++|..+..++.. ..+
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~------~~n 847 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI------STN 847 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc------ccc
Confidence 1234677888888754 678888888999999999988777777753 578888899888776655432 235
Q ss_pred ccccccccCcchhch
Q 041505 214 YFDLRYNYNWIEMRS 228 (248)
Q Consensus 214 L~~l~l~~n~i~~~~ 228 (248)
++.|++++|.++..+
T Consensus 848 L~~L~Ls~n~i~~iP 862 (1153)
T PLN03210 848 ISDLNLSRTGIEEVP 862 (1153)
T ss_pred cCEeECCCCCCccCh
Confidence 666666666665443
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=1.5e-19 Score=153.65 Aligned_cols=213 Identities=23% Similarity=0.248 Sum_probs=160.2
Q ss_pred hccchHh--hhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccCh-hhhcccCCCEEeccCCcCc
Q 041505 8 HALELFS--LYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPS-AIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 8 ~~~~l~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~ 83 (248)
+.++++. +|..+..+..|+.||+|+|+ ..+.|..+ ..+++-.|++|+|+ +..+|. .+-++..|-+||+++| ..
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rL 162 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RL 162 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hh
Confidence 3444433 67778888999999999987 88888888 88888999996655 566775 4678999999999985 67
Q ss_pred CcCCccccCCCCCcEEeccCccCCcccccccC---CCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhh
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNLQRLPDELG---NLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESV 160 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l 160 (248)
..+|+.+.++.+|++|++++|.+.-.-...++ +|..|++++.. .....+|.++..+.+|+.+|++.|.+..+|..+
T Consensus 163 e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecl 241 (1255)
T KOG0444|consen 163 EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENNLPIVPECL 241 (1255)
T ss_pred hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccCCCcchHHH
Confidence 78888899999999999999765432223444 44455665532 444568999999999999999999999999999
Q ss_pred hccCCcceecccCccccccCC--CCCcccceeccccccccccchhhcccccccccccccccccCcchhch
Q 041505 161 IQLSKLGRLYLRYWERLQSLP--KLPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 161 ~~~~~L~~L~l~~n~~~~~l~--~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~ 228 (248)
..+++|+.|++++|.+.+.-. +....|++|+++.+ +++.+|.... .+++|+.|..+.|.+..++
T Consensus 242 y~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avc---KL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAVC---KLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred hhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHHh---hhHHHHHHHhccCcccccC
Confidence 999999999999997543211 12367888888875 6677766554 4447777888888776554
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=2.5e-19 Score=150.89 Aligned_cols=222 Identities=21% Similarity=0.185 Sum_probs=110.4
Q ss_pred hhccchHhhh-hhhcCCCCccEEEccCCCCCcccCC-cc-ccCcccEEEcCCCCCcccc-ChhhhcccCCCEEeccCC--
Q 041505 7 DHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPA-GI-HLEFLKELDLLNGTAIEEL-PSAIECLYKLLHLDLEYC-- 80 (248)
Q Consensus 7 ~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~-- 80 (248)
++.+.+..+. ..|..+..|..|.|+.|+ +..+|. .| ++++|+.|++..|.+ ..+ -..|.++++|+.+.+.+|
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred eccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccce-eeehhhhhcCchhhhhhhhhhcCc
Confidence 3445555555 345556666666666665 444433 33 466666666644432 222 233445555555555444
Q ss_pred ----------------------cCcCcCCccccCCCCCcEEeccCccCCccccccc---CCCCceEecccCCcccccccc
Q 041505 81 ----------------------ESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPDEL---GNLEALWISREAGVISRWLPE 135 (248)
Q Consensus 81 ----------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~l~~~~n~~~~~~~~ 135 (248)
+....-..++.++++|+.|++++|.+....++.+ ++|++|+++. |.+..--+.
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~--N~i~~l~~~ 335 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS--NRITRLDEG 335 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc--cccccCChh
Confidence 3333333444455555555555544433333321 2344555555 444433344
Q ss_pred cccCCCCcCeEEccCCcCcccch-hhhccCCcceecccCccccccCC------CCCcccceeccccccccccchhhcccc
Q 041505 136 NIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLYLRYWERLQSLP------KLPCKLHELDAHHCTALESLSGLFSSF 208 (248)
Q Consensus 136 ~l~~~~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~l~~n~~~~~l~------~~~~~L~~L~l~~~~~l~~~~~~~~~l 208 (248)
++..+..|++|++++|+++.+.. .|.++++|++||+..|.+...+- ..+++|+.|++.++ +++.++. ..+
T Consensus 336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k--rAf 412 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK--RAF 412 (873)
T ss_pred HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecch--hhh
Confidence 45555555555555555554432 44555666666666665421111 12456666666665 3333322 223
Q ss_pred cccccccccccccCcchhchHHHHHHH
Q 041505 209 EARTRYFDLRYNYNWIEMRSEEFLKML 235 (248)
Q Consensus 209 ~~l~~L~~l~l~~n~i~~~~~~~~~~l 235 (248)
++++.|+.|++..|.|.-+.++.|+.+
T Consensus 413 sgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 413 SGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ccCcccceecCCCCcceeecccccccc
Confidence 355577777777777765555444443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.70 E-value=1.1e-17 Score=141.19 Aligned_cols=145 Identities=23% Similarity=0.246 Sum_probs=69.9
Q ss_pred chhhccchHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcC
Q 041505 5 VDDHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 5 ~~~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
++++.+.+.++. ..+.++++|+.+++.+|. ...+|... ...+|+.|++.+|.+...-.+.+.-++.|+.+|++.| .
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~ 160 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-L 160 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-h
Confidence 344455555544 345556666666666654 55555555 4445666666444433333344555666666666654 3
Q ss_pred cCcCCcc-ccCCCCCcEEeccCccCCcccc---cccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcC
Q 041505 83 LNSLPSG-LCKLKLLNYLTLNCCSNLQRLP---DELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNF 153 (248)
Q Consensus 83 ~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 153 (248)
+.++|.. +..-.++++|++++|.++..-. +.+.+|..|.++. |.+....+..|.++++|+.|++..|++
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr--NrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR--NRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc--CcccccCHHHhhhcchhhhhhccccce
Confidence 3333322 3233456666666554433222 2222333444444 444432333444455555555555544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=2.5e-18 Score=146.30 Aligned_cols=174 Identities=24% Similarity=0.284 Sum_probs=131.6
Q ss_pred cchhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc--ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCc
Q 041505 4 LVDDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI--HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCE 81 (248)
Q Consensus 4 l~~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 81 (248)
.++++.++++++|..+...+++-+|++|+|+ ++.+|..+ .+..|-+||+|+| ....+|+-+..+..|+.|++++|.
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCCh
Confidence 5788999999999999999999999999998 88888877 8999999999554 467889889999999999999886
Q ss_pred CcCcCCccccCCCCCcEEeccCccCC-ccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccc
Q 041505 82 SLNSLPSGLCKLKLLNYLTLNCCSNL-QRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIP 157 (248)
Q Consensus 82 ~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp 157 (248)
....-...+-.|++|++|++++.+.+ ..+|. .+.+|..++++. |... .+|..+-.+++|+.|++++|.++++.
T Consensus 185 L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~--N~Lp-~vPecly~l~~LrrLNLS~N~iteL~ 261 (1255)
T KOG0444|consen 185 LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE--NNLP-IVPECLYKLRNLRRLNLSGNKITELN 261 (1255)
T ss_pred hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc--cCCC-cchHHHhhhhhhheeccCcCceeeee
Confidence 65433333556777888888775443 34554 444566777776 4444 26777778888888888888887776
Q ss_pred hhhhccCCcceecccCccccccCCCC
Q 041505 158 ESVIQLSKLGRLYLRYWERLQSLPKL 183 (248)
Q Consensus 158 ~~l~~~~~L~~L~l~~n~~~~~l~~~ 183 (248)
...+.+.++++|+++.|+ ++.+|+.
T Consensus 262 ~~~~~W~~lEtLNlSrNQ-Lt~LP~a 286 (1255)
T KOG0444|consen 262 MTEGEWENLETLNLSRNQ-LTVLPDA 286 (1255)
T ss_pred ccHHHHhhhhhhccccch-hccchHH
Confidence 666677777777777775 3455554
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=3.9e-16 Score=147.88 Aligned_cols=196 Identities=28% Similarity=0.366 Sum_probs=133.5
Q ss_pred cccchhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccCh-----------------
Q 041505 2 KELVDDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPS----------------- 64 (248)
Q Consensus 2 ~~l~~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------------- 64 (248)
+.|...+|..+..+|..++.+++|+.|++++|...+.+|..+.++.|++|++++|.....+|.
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEE 739 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccc
Confidence 344445566677777777777777777777776666666655666666666666543322221
Q ss_pred ---hh------------------------------hcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCcccc
Q 041505 65 ---AI------------------------------ECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLP 111 (248)
Q Consensus 65 ---~~------------------------------~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 111 (248)
.+ ...++|+.|++++|.....+|.+++.+++|+.|++++|...+.+|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 10 012356666666666666677777788888888888877777777
Q ss_pred cc--cCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCccccccCCCC---Ccc
Q 041505 112 DE--LGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPKL---PCK 186 (248)
Q Consensus 112 ~~--~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~~---~~~ 186 (248)
.. +++|+.|++++|.+. ..+|.. .++|+.|++++|.++.+|.++..+++|+.|++.+|..+..+|.. ++.
T Consensus 820 ~~~~L~sL~~L~Ls~c~~L--~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 820 TGINLESLESLDLSGCSRL--RTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred CCCCccccCEEECCCCCcc--cccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 63 456777888775422 224432 35788899999999999999999999999999998777766653 467
Q ss_pred cceeccccccccccch
Q 041505 187 LHELDAHHCTALESLS 202 (248)
Q Consensus 187 L~~L~l~~~~~l~~~~ 202 (248)
|+.+++++|..+..++
T Consensus 895 L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 895 LETVDFSDCGALTEAS 910 (1153)
T ss_pred CCeeecCCCccccccc
Confidence 7788889998776543
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=1.3e-18 Score=125.83 Aligned_cols=173 Identities=30% Similarity=0.407 Sum_probs=144.1
Q ss_pred hHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccc
Q 041505 12 LFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGL 90 (248)
Q Consensus 12 l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 90 (248)
..+++ .+..+.+++.|.+++|. +..+|+.+ .+.+|+.|++ .|+.+.++|..++.+++|+.|++.-| .....|.+|
T Consensus 23 f~~~~-gLf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~-~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgf 98 (264)
T KOG0617|consen 23 FEELP-GLFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNL-SNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGF 98 (264)
T ss_pred Hhhcc-cccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhc-ccchhhhcChhhhhchhhhheecchh-hhhcCcccc
Confidence 33443 45668899999999997 88888888 9999999999 67778999999999999999999974 677899999
Q ss_pred cCCCCCcEEeccCccCC-cccccccCCCC---ceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCc
Q 041505 91 CKLKLLNYLTLNCCSNL-QRLPDELGNLE---ALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKL 166 (248)
Q Consensus 91 ~~l~~L~~L~l~~~~~~-~~~~~~~~~l~---~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L 166 (248)
+.++.|++||+..|++. ..+|..+..++ .|+++. |.+. -+|..++.+++|+.|.+.+|.+-.+|..++.+..|
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~d--ndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~l 175 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD--NDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRL 175 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC--CCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHH
Confidence 99999999999998875 46787776655 777877 5565 47899999999999999999999999999999999
Q ss_pred ceecccCccccccCCCCCcccceeccccc
Q 041505 167 GRLYLRYWERLQSLPKLPCKLHELDAHHC 195 (248)
Q Consensus 167 ~~L~l~~n~~~~~l~~~~~~L~~L~l~~~ 195 (248)
++|.+++|++ +.+| +.|..+++.+.
T Consensus 176 relhiqgnrl-~vlp---pel~~l~l~~~ 200 (264)
T KOG0617|consen 176 RELHIQGNRL-TVLP---PELANLDLVGN 200 (264)
T ss_pred HHHhccccee-eecC---hhhhhhhhhhh
Confidence 9999999953 3444 55666666543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=8.5e-18 Score=136.05 Aligned_cols=213 Identities=30% Similarity=0.344 Sum_probs=154.4
Q ss_pred chhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCc
Q 041505 5 VDDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 5 ~~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
++++.+.+.++|++++.+..++.++.++|. ...+|+++ .+..++.++- .++.+..+|..+.++.++..+++.+|. .
T Consensus 96 l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~-~~N~i~slp~~~~~~~~l~~l~~~~n~-l 172 (565)
T KOG0472|consen 96 LNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDA-TNNQISSLPEDMVNLSKLSKLDLEGNK-L 172 (565)
T ss_pred hhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhc-cccccccCchHHHHHHHHHHhhccccc-h
Confidence 345566777777777777777777777776 55566666 7777777777 444456777778888888888888754 4
Q ss_pred CcCCccccCCCCCcEEeccCccCCcccccccCCCCce---EecccCCcccccccccccCCCCcCeEEccCCcCcccchhh
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEAL---WISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESV 160 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L---~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l 160 (248)
...|+....++.|++||... +..+.+|+.++.+++| ++.. |.+. .+| .|++|..|.++++..|.+..+|+..
T Consensus 173 ~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~--Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~ 247 (565)
T KOG0472|consen 173 KALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRR--NKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEH 247 (565)
T ss_pred hhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhh--cccc-cCC-CCCccHHHHHHHhcccHHHhhHHHH
Confidence 45555555588899999887 6778899888877744 4555 4444 355 7889999999999999998888754
Q ss_pred -hccCCcceecccCccccccCCCC---CcccceeccccccccccchhhcccccccccccccccccCcchhchHHH
Q 041505 161 -IQLSKLGRLYLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRSEEF 231 (248)
Q Consensus 161 -~~~~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~~~~ 231 (248)
.+++++.+||+..|+ ++.+|+. +.+|+.||++++ .+..++.... .+ .|+.+-+.+|.+...-.+.
T Consensus 248 ~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN-~is~Lp~sLg---nl-hL~~L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNN-DISSLPYSLG---NL-HLKFLALEGNPLRTIRREI 316 (565)
T ss_pred hcccccceeeeccccc-cccCchHHHHhhhhhhhcccCC-ccccCCcccc---cc-eeeehhhcCCchHHHHHHH
Confidence 488999999999995 5567764 467888999875 5566655444 34 6888888888887664433
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1e-17 Score=121.19 Aligned_cols=155 Identities=26% Similarity=0.337 Sum_probs=130.8
Q ss_pred hhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcC
Q 041505 6 DDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLN 84 (248)
Q Consensus 6 ~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 84 (248)
-++++.+..+|+.++.+.+|++|++.+|+ ++++|..+ ++++|+.|++ +-+....+|..|+.+|.|+.||+.+|+...
T Consensus 39 tLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnv-gmnrl~~lprgfgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 39 TLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNV-GMNRLNILPRGFGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred hcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheec-chhhhhcCccccCCCchhhhhhcccccccc
Confidence 45678888999999999999999999987 99999999 9999999999 555567789999999999999999987654
Q ss_pred -cCCccccCCCCCcEEeccCccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhcc
Q 041505 85 -SLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQL 163 (248)
Q Consensus 85 -~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~ 163 (248)
.+|..|+.++-|+.|.++.|. ...+|..+++++.|.+-.......-++|..++.++.|++|.+.+|+++.+|..++.+
T Consensus 117 ~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 578889999999999999954 558899999888776544322223348999999999999999999999999876553
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=6.6e-17 Score=130.95 Aligned_cols=209 Identities=28% Similarity=0.342 Sum_probs=142.9
Q ss_pred hccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhh-cccCCCEEeccCCcCcCc
Q 041505 8 HALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIE-CLYKLLHLDLEYCESLNS 85 (248)
Q Consensus 8 ~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~ 85 (248)
..+.+..+|+.++.+..|..|++.+|. +..+| +| ++..|.++.+ +.+.+..+|.... .++++..||+.+| ...+
T Consensus 191 ~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~-g~N~i~~lpae~~~~L~~l~vLDLRdN-klke 266 (565)
T KOG0472|consen 191 NSNLLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCSLLKELHV-GENQIEMLPAEHLKHLNSLLVLDLRDN-KLKE 266 (565)
T ss_pred chhhhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccHHHHHHHh-cccHHHhhHHHHhcccccceeeecccc-cccc
Confidence 345678888889999999999999886 77777 45 7777777777 6666667776554 6778888888774 5667
Q ss_pred CCccccCCCCCcEEeccCccCCcccccccCCCC--ceEecccC-------------------------------------
Q 041505 86 LPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLE--ALWISREA------------------------------------- 126 (248)
Q Consensus 86 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~l~~~~------------------------------------- 126 (248)
+|+++..+.+|++||+++|.+ ..+|..+++++ .|.+.++.
T Consensus 267 ~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDI-SSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred CchHHHHhhhhhhhcccCCcc-ccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 777777777888888877443 35565555542 33333332
Q ss_pred ---------------------------------------------------------------------------Ccccc
Q 041505 127 ---------------------------------------------------------------------------GVISR 131 (248)
Q Consensus 127 ---------------------------------------------------------------------------n~~~~ 131 (248)
+...+
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is 425 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS 425 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc
Confidence 34444
Q ss_pred cccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCccccccCCC---------------------------CC
Q 041505 132 WLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPK---------------------------LP 184 (248)
Q Consensus 132 ~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~---------------------------~~ 184 (248)
.+|..+..+++|..|++++|-+..+|..++.+..|+.|+++.|++. .+|. ..
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 5666778888888888888888888888888888888888888541 2221 12
Q ss_pred cccceeccccccccccchhhcccccccccccccccccCcchh
Q 041505 185 CKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEM 226 (248)
Q Consensus 185 ~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~ 226 (248)
.+|.+|++.++ .++.+|.... ++.+|+.|++.+|.|..
T Consensus 505 ~nL~tLDL~nN-dlq~IPp~Lg---nmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 505 RNLTTLDLQNN-DLQQIPPILG---NMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hhcceeccCCC-chhhCChhhc---cccceeEEEecCCccCC
Confidence 45666666554 4455544444 44478888888887773
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=6e-15 Score=132.60 Aligned_cols=155 Identities=27% Similarity=0.369 Sum_probs=70.2
Q ss_pred CccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccC
Q 041505 24 HIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNC 103 (248)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 103 (248)
+|+.|++++|. +..+|..+ ...|+.|++++|.+ ..+|..+. .+|++|++++|.+. .+|..+. ++|++|++++
T Consensus 221 nL~~L~Ls~N~-LtsLP~~l-~~~L~~L~Ls~N~L-~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 221 NIKTLYANSNQ-LTSIPATL-PDTIQEMELSINRI-TELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYD 292 (754)
T ss_pred CCCEEECCCCc-cccCChhh-hccccEEECcCCcc-CcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCC
Confidence 44444554444 22333322 12345555544332 24443332 34555555554332 3444332 3566666655
Q ss_pred ccCCcccccccC-CCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCccccccCCC
Q 041505 104 CSNLQRLPDELG-NLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPK 182 (248)
Q Consensus 104 ~~~~~~~~~~~~-~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~ 182 (248)
|++. .+|..++ ++..|+++. |.+.. +|..+ .++|+.|++++|.++.+|..+ .++|+.|++++|.+. .+|.
T Consensus 293 N~Lt-~LP~~lp~sL~~L~Ls~--N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~-~LP~ 363 (754)
T PRK15370 293 NSIR-TLPAHLPSGITHLNVQS--NSLTA-LPETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQIT-VLPE 363 (754)
T ss_pred Cccc-cCcccchhhHHHHHhcC--Ccccc-CCccc--cccceeccccCCccccCChhh--cCcccEEECCCCCCC-cCCh
Confidence 4433 2333222 244444444 22321 23222 135566666666665555443 246666666666432 3343
Q ss_pred -CCcccceeccccc
Q 041505 183 -LPCKLHELDAHHC 195 (248)
Q Consensus 183 -~~~~L~~L~l~~~ 195 (248)
.+++|+.|++++|
T Consensus 364 ~lp~~L~~LdLs~N 377 (754)
T PRK15370 364 TLPPTITTLDVSRN 377 (754)
T ss_pred hhcCCcCEEECCCC
Confidence 2345666666655
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=2.9e-14 Score=127.86 Aligned_cols=83 Identities=23% Similarity=0.195 Sum_probs=48.9
Q ss_pred CcCeEEccCCcCcccchhhhccCCcceecccCccccccCCCCCcccceeccccccccccchhhccccccccccccccccc
Q 041505 142 SLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNY 221 (248)
Q Consensus 142 ~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~ 221 (248)
+|+.|++++|.++.+|.. .++|+.|++++|.+ ..+|..+.+|+.|+++++ .++.+|.. +..+++|..+++++
T Consensus 383 ~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~L-ssIP~l~~~L~~L~Ls~N-qLt~LP~s---l~~L~~L~~LdLs~ 454 (788)
T PRK15387 383 GLKELIVSGNRLTSLPVL---PSELKELMVSGNRL-TSLPMLPSGLLSLSVYRN-QLTRLPES---LIHLSSETTVNLEG 454 (788)
T ss_pred ccceEEecCCcccCCCCc---ccCCCEEEccCCcC-CCCCcchhhhhhhhhccC-cccccChH---HhhccCCCeEECCC
Confidence 455666666666555532 24566666666643 345555556666666654 34444433 33556888888888
Q ss_pred CcchhchHHHH
Q 041505 222 NWIEMRSEEFL 232 (248)
Q Consensus 222 n~i~~~~~~~~ 232 (248)
|.+.......+
T Consensus 455 N~Ls~~~~~~L 465 (788)
T PRK15387 455 NPLSERTLQAL 465 (788)
T ss_pred CCCCchHHHHH
Confidence 88876544444
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.55 E-value=4.9e-15 Score=122.14 Aligned_cols=218 Identities=21% Similarity=0.177 Sum_probs=122.8
Q ss_pred hhhhhhcCCCCccEEEccCCCCCc------ccCCcc-ccCcccEEEcCCCCCccccChhhhcccC---CCEEeccCCcCc
Q 041505 14 SLYAFKQNNPHIVVLNLRDCKSLK------SLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYK---LLHLDLEYCESL 83 (248)
Q Consensus 14 ~l~~~l~~l~~L~~L~l~~~~~~~------~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~ 83 (248)
.+++.+...+.++.++++++.+.+ .++..+ .+++|++|++++|......+..+..+.+ |++|++++|...
T Consensus 42 ~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 42 ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 344555566667777777765331 122233 5667777777766665544555555554 777777776544
Q ss_pred C----cCCccccCC-CCCcEEeccCccCCccc----cc---ccCCCCceEecccCCcccc----cccccccCCCCcCeEE
Q 041505 84 N----SLPSGLCKL-KLLNYLTLNCCSNLQRL----PD---ELGNLEALWISREAGVISR----WLPENIGQLSSLGKLD 147 (248)
Q Consensus 84 ~----~~~~~l~~l-~~L~~L~l~~~~~~~~~----~~---~~~~l~~L~l~~~~n~~~~----~~~~~l~~~~~L~~L~ 147 (248)
. .+...+..+ ++|+.|++++|.+.+.. +. ...+++.|++++ +.+.+ .++..+...++|+.|+
T Consensus 122 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~--n~l~~~~~~~l~~~l~~~~~L~~L~ 199 (319)
T cd00116 122 DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN--NGIGDAGIRALAEGLKANCNLEVLD 199 (319)
T ss_pred hHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC--CCCchHHHHHHHHHHHhCCCCCEEe
Confidence 2 122334455 67777777777665321 11 233566777766 33332 1333455556777788
Q ss_pred ccCCcCc-----ccchhhhccCCcceecccCccccc----c----CCCCCcccceecccccccccc-chhhccccccccc
Q 041505 148 LQKNNFE-----RIPESVIQLSKLGRLYLRYWERLQ----S----LPKLPCKLHELDAHHCTALES-LSGLFSSFEARTR 213 (248)
Q Consensus 148 l~~n~l~-----~lp~~l~~~~~L~~L~l~~n~~~~----~----l~~~~~~L~~L~l~~~~~l~~-~~~~~~~l~~l~~ 213 (248)
+++|.++ .++..+..+++|++|++++|.+.. . ++...+.|++|++++|.-... .......+..+++
T Consensus 200 L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 279 (319)
T cd00116 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES 279 (319)
T ss_pred ccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence 8777764 233445566778888887775432 1 111125777787777632110 0011122334467
Q ss_pred ccccccccCcchhchHHHHH
Q 041505 214 YFDLRYNYNWIEMRSEEFLK 233 (248)
Q Consensus 214 L~~l~l~~n~i~~~~~~~~~ 233 (248)
|+.+++++|.+...+...+.
T Consensus 280 L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 280 LLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred ccEEECCCCCCcHHHHHHHH
Confidence 88888888888877654443
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.54 E-value=2.1e-16 Score=127.72 Aligned_cols=220 Identities=20% Similarity=0.142 Sum_probs=148.4
Q ss_pred cchhhccchHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccCh-hhhcccCCCEEeccCC
Q 041505 4 LVDDHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPS-AIECLYKLLHLDLEYC 80 (248)
Q Consensus 4 l~~~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~ 80 (248)
.+.+..++|+.+| .+|..+++|++|||++|.+....|++| +++.+..|-+.+++.++.+|. .|+++..++.|.+.-|
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 3456788999999 568899999999999998666778888 999999998878777888874 5777887777777666
Q ss_pred cCcCcCCccccCCCCCcEEeccCccCCccccc----ccCCCCceEecccC------------------------------
Q 041505 81 ESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPD----ELGNLEALWISREA------------------------------ 126 (248)
Q Consensus 81 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~l~~~~------------------------------ 126 (248)
.+.....+.+..+++|..|.+..|.. +.++. .+...+.+++..+.
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 55555455566666666655554322 11111 11111111111000
Q ss_pred ----------------------------Cc-cccccc-ccccCCCCcCeEEccCCcCcccc-hhhhccCCcceecccCcc
Q 041505 127 ----------------------------GV-ISRWLP-ENIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLYLRYWE 175 (248)
Q Consensus 127 ----------------------------n~-~~~~~~-~~l~~~~~L~~L~l~~n~l~~lp-~~l~~~~~L~~L~l~~n~ 175 (248)
+. ....-| ..|..+++|++|++++|+++.+. .+|.+..++++|.+..|+
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 11 111112 24889999999999999998885 589999999999999997
Q ss_pred ccc---cCCCCCcccceeccccccccccchhhcccccccccccccccccCcchhc
Q 041505 176 RLQ---SLPKLPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMR 227 (248)
Q Consensus 176 ~~~---~l~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~ 227 (248)
+.. .+.+....|++|++.++......+..+..+. .|..+.+-.|.+.-+
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~---~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF---SLSTLNLLSNPFNCN 361 (498)
T ss_pred HHHHHHHhhhccccceeeeecCCeeEEEecccccccc---eeeeeehccCcccCc
Confidence 532 2334568899999988866566666666555 666667777766543
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=6.3e-15 Score=121.50 Aligned_cols=237 Identities=19% Similarity=0.083 Sum_probs=158.3
Q ss_pred hccchH--hhhhhhcCCCCccEEEccCCCCCc----ccCCcc-ccCcccEEEcCCCCCc------cccChhhhcccCCCE
Q 041505 8 HALELF--SLYAFKQNNPHIVVLNLRDCKSLK----SLPAGI-HLEFLKELDLLNGTAI------EELPSAIECLYKLLH 74 (248)
Q Consensus 8 ~~~~l~--~l~~~l~~l~~L~~L~l~~~~~~~----~~~~~~-~l~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~ 74 (248)
++..+. .....+..+..|+++++++|.+.. .++..+ ..+.+++++++++... ..++..+..+++|++
T Consensus 6 ~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 85 (319)
T cd00116 6 KGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQE 85 (319)
T ss_pred ccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeE
Confidence 444443 333455667779999999998533 344445 6778999999877655 224556778899999
Q ss_pred EeccCCcCcCcCCccccCCCC---CcEEeccCccCCcc----cc---ccc-CCCCceEecccCCcccc----cccccccC
Q 041505 75 LDLEYCESLNSLPSGLCKLKL---LNYLTLNCCSNLQR----LP---DEL-GNLEALWISREAGVISR----WLPENIGQ 139 (248)
Q Consensus 75 L~l~~~~~~~~~~~~l~~l~~---L~~L~l~~~~~~~~----~~---~~~-~~l~~L~l~~~~n~~~~----~~~~~l~~ 139 (248)
|++++|.+....+..+..+.+ |++|++++|+..+. +. ... .+++.|+++++ .+.+ .++..+..
T Consensus 86 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n--~l~~~~~~~~~~~~~~ 163 (319)
T cd00116 86 LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN--RLEGASCEALAKALRA 163 (319)
T ss_pred EEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC--cCCchHHHHHHHHHHh
Confidence 999998776655555555555 99999999877631 11 233 67789999984 4442 24455777
Q ss_pred CCCcCeEEccCCcCc-----ccchhhhccCCcceecccCcccccc-------CCCCCcccceeccccccccccc-hhhc-
Q 041505 140 LSSLGKLDLQKNNFE-----RIPESVIQLSKLGRLYLRYWERLQS-------LPKLPCKLHELDAHHCTALESL-SGLF- 205 (248)
Q Consensus 140 ~~~L~~L~l~~n~l~-----~lp~~l~~~~~L~~L~l~~n~~~~~-------l~~~~~~L~~L~l~~~~~l~~~-~~~~- 205 (248)
+++|+.|++++|.++ .++..+...++|++|++++|.+... .....++|++|++++|.. ... ....
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l-~~~~~~~l~ 242 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL-TDAGAAALA 242 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC-chHHHHHHH
Confidence 889999999999986 2344556677999999999975321 112347899999998743 221 1111
Q ss_pred ccc-cccccccccccccCcchhchHHHHHHH---HhhhhheecccC
Q 041505 206 SSF-EARTRYFDLRYNYNWIEMRSEEFLKML---CKKLNFWQLHYG 247 (248)
Q Consensus 206 ~~l-~~l~~L~~l~l~~n~i~~~~~~~~~~l---~~~l~~~~~~~~ 247 (248)
..+ ...+.|+.+++.+|.+...+...+... ++.++...+.++
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 111 124799999999999987665444333 345565555544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=2.4e-14 Score=128.79 Aligned_cols=204 Identities=23% Similarity=0.280 Sum_probs=147.5
Q ss_pred hhccchHhhhhhhcCCCCccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcC
Q 041505 7 DHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSL 86 (248)
Q Consensus 7 ~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 86 (248)
++.+.++.+|..+. ..|+.|++++|. +..+|..+. ..|++|++++|.+ ..+|..+. ++|++|++++|.+. .+
T Consensus 227 Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~-s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~Lt-~L 298 (754)
T PRK15370 227 ANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLP-SALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNSIR-TL 298 (754)
T ss_pred CCCCccccCChhhh--ccccEEECcCCc-cCcCChhHh-CCCCEEECcCCcc-CccccccC--CCCcEEECCCCccc-cC
Confidence 34455666665443 579999999998 557776652 4799999966654 56776553 58999999997554 56
Q ss_pred CccccCCCCCcEEeccCccCCccccc-ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCC
Q 041505 87 PSGLCKLKLLNYLTLNCCSNLQRLPD-ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSK 165 (248)
Q Consensus 87 ~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~ 165 (248)
|..+. ++|+.|++++|.+. .+|. ...+|+.|++.. |.+.. +|..+. ++|+.|++++|+++.+|..+ .++
T Consensus 299 P~~lp--~sL~~L~Ls~N~Lt-~LP~~l~~sL~~L~Ls~--N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~ 368 (754)
T PRK15370 299 PAHLP--SGITHLNVQSNSLT-ALPETLPPGLKTLEAGE--NALTS-LPASLP--PELQVLDVSKNQITVLPETL--PPT 368 (754)
T ss_pred cccch--hhHHHHHhcCCccc-cCCccccccceeccccC--Ccccc-CChhhc--CcccEEECCCCCCCcCChhh--cCC
Confidence 65543 47999999997765 4554 345788999888 44543 666553 68999999999999888765 378
Q ss_pred cceecccCccccccCCC-CCcccceeccccccccccchhhcccc-cccccccccccccCcchhchHH
Q 041505 166 LGRLYLRYWERLQSLPK-LPCKLHELDAHHCTALESLSGLFSSF-EARTRYFDLRYNYNWIEMRSEE 230 (248)
Q Consensus 166 L~~L~l~~n~~~~~l~~-~~~~L~~L~l~~~~~l~~~~~~~~~l-~~l~~L~~l~l~~n~i~~~~~~ 230 (248)
|+.|++++|.+. .+|. .+..|+.|+++++ .+..++.....+ ..++.+..+++.+|.+......
T Consensus 369 L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~ 433 (754)
T PRK15370 369 ITTLDVSRNALT-NLPENLPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQ 433 (754)
T ss_pred cCEEECCCCcCC-CCCHhHHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCccHHHHH
Confidence 999999999755 5564 3467999999886 556666544333 2457888999999998754433
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=7.1e-15 Score=129.88 Aligned_cols=95 Identities=29% Similarity=0.454 Sum_probs=61.9
Q ss_pred hccchHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCc
Q 041505 8 HALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNS 85 (248)
Q Consensus 8 ~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 85 (248)
+.+.+-+.| +++.+..+|++||+++|. ++.+|..+ .+++|+.|++ .++.+..+|.....+.+|+++.+.. +....
T Consensus 29 ~~N~~l~~pl~~~~~~v~L~~l~lsnn~-~~~fp~~it~l~~L~~ln~-s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~ 105 (1081)
T KOG0618|consen 29 RRNSLLSRPLEFVEKRVKLKSLDLSNNQ-ISSFPIQITLLSHLRQLNL-SRNYIRSVPSSCSNMRNLQYLNLKN-NRLQS 105 (1081)
T ss_pred cccccccCchHHhhheeeeEEeeccccc-cccCCchhhhHHHHhhccc-chhhHhhCchhhhhhhcchhheecc-chhhc
Confidence 344444434 334444457777777775 77777777 6777777777 4445566676677777777777764 46666
Q ss_pred CCccccCCCCCcEEeccCcc
Q 041505 86 LPSGLCKLKLLNYLTLNCCS 105 (248)
Q Consensus 86 ~~~~l~~l~~L~~L~l~~~~ 105 (248)
.|.++..+++|++|++++|.
T Consensus 106 lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 106 LPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred CchhHHhhhcccccccchhc
Confidence 77777777777777777654
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=7.1e-14 Score=123.69 Aligned_cols=211 Identities=24% Similarity=0.278 Sum_probs=133.2
Q ss_pred ccchhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCc
Q 041505 3 ELVDDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCE 81 (248)
Q Consensus 3 ~l~~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 81 (248)
..++.+.+.++.+|.-++.+.+|+.+++.+|. ...+|..+ ....|+.+.+..|. ...+|+...++.+|++|++..|.
T Consensus 244 ~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 244 QYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred eeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhcc
Confidence 34566777777788777778888888888876 45555555 56666666663333 34455555566666666666643
Q ss_pred CcCcCCccc--------------------------cCCCCCcEEeccCccCCccc-c--cccCCCCceEecccCCccccc
Q 041505 82 SLNSLPSGL--------------------------CKLKLLNYLTLNCCSNLQRL-P--DELGNLEALWISREAGVISRW 132 (248)
Q Consensus 82 ~~~~~~~~l--------------------------~~l~~L~~L~l~~~~~~~~~-~--~~~~~l~~L~l~~~~n~~~~~ 132 (248)
+..+|+.+ ..++.|+.|.+.+|.+.... | ..+.+|+.|++++ |... +
T Consensus 322 -L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy--NrL~-~ 397 (1081)
T KOG0618|consen 322 -LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY--NRLN-S 397 (1081)
T ss_pred -ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc--cccc-c
Confidence 33333221 11234556666665554332 2 2555677777777 4444 2
Q ss_pred ccc-cccCCCCcCeEEccCCcCcccchhhhccCCcceecccCccccccCCCC--Ccccceeccccccccccchhhccccc
Q 041505 133 LPE-NIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFE 209 (248)
Q Consensus 133 ~~~-~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~~--~~~L~~L~l~~~~~l~~~~~~~~~l~ 209 (248)
+|+ .+.++..|++|+++||+++.+|..+..++.|++|....|. +..+|.. .+.|+.+|++.+ +++..-.....
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~-- 473 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDLSCN-NLSEVTLPEAL-- 473 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEecccc-hhhhhhhhhhC--
Confidence 444 4777888888888888888888888888888888887774 3456653 477888888754 44443322211
Q ss_pred ccccccccccccCc
Q 041505 210 ARTRYFDLRYNYNW 223 (248)
Q Consensus 210 ~l~~L~~l~l~~n~ 223 (248)
..++|++||+++|.
T Consensus 474 p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNT 487 (1081)
T ss_pred CCcccceeeccCCc
Confidence 11689999999986
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.27 E-value=4.4e-11 Score=107.69 Aligned_cols=195 Identities=27% Similarity=0.247 Sum_probs=118.7
Q ss_pred chhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcC
Q 041505 5 VDDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLN 84 (248)
Q Consensus 5 ~~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 84 (248)
++++.+.++.+|+.+. .+|+.|++++|. +..+|. ..++|++|++++|+ +..+|.. .++|+.|++++|.+ .
T Consensus 206 LdLs~~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N~L-~ 275 (788)
T PRK15387 206 LNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSNPL-T 275 (788)
T ss_pred EEcCCCCCCcCCcchh--cCCCEEEccCCc-CCCCCC--CCCCCcEEEecCCc-cCcccCc---ccccceeeccCCch-h
Confidence 4566677788887664 478899999887 556665 35788899996664 4456642 46788888888653 3
Q ss_pred cCCccccCCCCCcEEeccCccCCcccccccCCCCceEecccCCcccccccccccC----------------C-CCcCeEE
Q 041505 85 SLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQ----------------L-SSLGKLD 147 (248)
Q Consensus 85 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~----------------~-~~L~~L~ 147 (248)
.+|.. .++|+.|++++|.+. .+|...++|+.|++++ |.+.+ +|..... + .+|+.|+
T Consensus 276 ~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~p~~L~~LdLS~--N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~Ld 348 (788)
T PRK15387 276 HLPAL---PSGLCKLWIFGNQLT-SLPVLPPGLQELSVSD--NQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELS 348 (788)
T ss_pred hhhhc---hhhcCEEECcCCccc-cccccccccceeECCC--Ccccc-CCCCcccccccccccCccccccccccccceEe
Confidence 45542 256888888886544 5677777888888888 54543 3331110 1 2455555
Q ss_pred ccCCcCcccchhhhccCCcceecccCccccccCCCCCcccceeccccccccccchhhcccccccccccccccccCcchhc
Q 041505 148 LQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMR 227 (248)
Q Consensus 148 l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~ 227 (248)
+++|+++.+|.. .++|+.|++++|.+. .+|..+.+|+.|+++++ .+..++.. .++|+.|++++|.+...
T Consensus 349 LS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l~~~L~~LdLs~N-~Lt~LP~l------~s~L~~LdLS~N~LssI 417 (788)
T PRK15387 349 VSDNQLASLPTL---PSELYKLWAYNNRLT-SLPALPSGLKELIVSGN-RLTSLPVL------PSELKELMVSGNRLTSL 417 (788)
T ss_pred cCCCccCCCCCC---Ccccceehhhccccc-cCcccccccceEEecCC-cccCCCCc------ccCCCEEEccCCcCCCC
Confidence 555555555532 234555555555432 45555556666666655 33333321 23566677777766654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.20 E-value=6.4e-13 Score=107.81 Aligned_cols=138 Identities=27% Similarity=0.288 Sum_probs=97.2
Q ss_pred ccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc--ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcC
Q 041505 9 ALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI--HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSL 86 (248)
Q Consensus 9 ~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 86 (248)
...+.++|..+ ...-+.++|..|. +..+|+.. .+++|+.||+++|++...-|.+|.+++++..|-+.+++.+..+
T Consensus 55 ~~GL~eVP~~L--P~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 55 GKGLTEVPANL--PPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred CCCcccCcccC--CCcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 34566666544 2566789999987 77777655 8999999999888877777888999999988877765566666
Q ss_pred Ccc-ccCCCCCcEEeccCccCCcccccccCCCCce---EecccCCcccccccc-cccCCCCcCeEEccCCc
Q 041505 87 PSG-LCKLKLLNYLTLNCCSNLQRLPDELGNLEAL---WISREAGVISRWLPE-NIGQLSSLGKLDLQKNN 152 (248)
Q Consensus 87 ~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L---~l~~~~n~~~~~~~~-~l~~~~~L~~L~l~~n~ 152 (248)
|.. |+.+..|+.|.+..|...-...+.+..+..+ .+-. |.+. .++. ++..+..++.+.++.|.
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD--n~~q-~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD--NKIQ-SICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc--hhhh-hhccccccchhccchHhhhcCc
Confidence 654 7889999999888776654444445545444 3333 3333 2444 67778888888777766
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=5e-12 Score=107.00 Aligned_cols=163 Identities=27% Similarity=0.272 Sum_probs=106.4
Q ss_pred hhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCc
Q 041505 6 DDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNS 85 (248)
Q Consensus 6 ~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 85 (248)
.+..+.+..+|.+++.+..|++++++.|+ +..+|..+..--|+.|.+ .|+..+.+|+.++..+.|..+|++.|. +..
T Consensus 104 iLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lpLkvli~-sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~s 180 (722)
T KOG0532|consen 104 ILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLPLKVLIV-SNNKLTSLPEEIGLLPTLAHLDVSKNE-IQS 180 (722)
T ss_pred HHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCcceeEEE-ecCccccCCcccccchhHHHhhhhhhh-hhh
Confidence 34455566677777777777777777776 666666664444777777 444456667767777777777777654 445
Q ss_pred CCccccCCCCCcEEeccCccCCcccccccCCCC--ceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhh---
Q 041505 86 LPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLE--ALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESV--- 160 (248)
Q Consensus 86 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l--- 160 (248)
+|..++.+.+|+.|.+..|++. .+|.++.+|. +|++++ |.+.. +|..|.+|+.|++|-+.+|.++.-|..+
T Consensus 181 lpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi~lDfSc--Nkis~-iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~k 256 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLIRLDFSC--NKISY-LPVDFRKMRHLQVLQLENNPLQSPPAQICEK 256 (722)
T ss_pred chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCceeeeeccc--Cceee-cchhhhhhhhheeeeeccCCCCCChHHHHhc
Confidence 5666777777777777774433 6666666655 666666 54542 6777777777777777777777666544
Q ss_pred hccCCcceecccCcc
Q 041505 161 IQLSKLGRLYLRYWE 175 (248)
Q Consensus 161 ~~~~~L~~L~l~~n~ 175 (248)
+...-.|+|+...|+
T Consensus 257 GkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 257 GKVHIFKYLSTQACQ 271 (722)
T ss_pred cceeeeeeecchhcc
Confidence 334555667776663
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.04 E-value=7.3e-11 Score=94.53 Aligned_cols=210 Identities=20% Similarity=0.162 Sum_probs=125.1
Q ss_pred hhhhhcCCCCccEEEccCCCCCcc----cCCcc-ccCcccEEEcCCCC---CccccChh-------hhcccCCCEEeccC
Q 041505 15 LYAFKQNNPHIVVLNLRDCKSLKS----LPAGI-HLEFLKELDLLNGT---AIEELPSA-------IECLYKLLHLDLEY 79 (248)
Q Consensus 15 l~~~l~~l~~L~~L~l~~~~~~~~----~~~~~-~l~~L~~L~l~~~~---~~~~~~~~-------~~~l~~L~~L~l~~ 79 (248)
+-+.+..+..++.+++++|.+... +.+.+ ..++|+..++++-- ...++|++ +-++|+|+++++|+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 334566788899999999885543 23333 56678888875422 22334433 45678899999998
Q ss_pred CcCcCcCCcc----ccCCCCCcEEeccCccCCccc-------------ccccC---CCCceEecccCCcccc----cccc
Q 041505 80 CESLNSLPSG----LCKLKLLNYLTLNCCSNLQRL-------------PDELG---NLEALWISREAGVISR----WLPE 135 (248)
Q Consensus 80 ~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~-------------~~~~~---~l~~L~l~~~~n~~~~----~~~~ 135 (248)
|-+....+.. +.+++.|++|.+.+|.+.-.- ....+ +|+.+..++ |.... .+..
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r--Nrlen~ga~~~A~ 179 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR--NRLENGGATALAE 179 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec--cccccccHHHHHH
Confidence 7665554443 455788999988887653111 11122 344555555 33332 1334
Q ss_pred cccCCCCcCeEEccCCcCc-----ccchhhhccCCcceecccCccccc--------cCCCCCcccceeccccccccccch
Q 041505 136 NIGQLSSLGKLDLQKNNFE-----RIPESVIQLSKLGRLYLRYWERLQ--------SLPKLPCKLHELDAHHCTALESLS 202 (248)
Q Consensus 136 ~l~~~~~L~~L~l~~n~l~-----~lp~~l~~~~~L~~L~l~~n~~~~--------~l~~~~~~L~~L~l~~~~~l~~~~ 202 (248)
.+...+.|+.+.+..|.+. .+...+.++++|+.||+..|.+.. .++.+ +.|+.+++++|. ++.-.
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~-~~L~El~l~dcl-l~~~G 257 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW-PHLRELNLGDCL-LENEG 257 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc-chheeecccccc-ccccc
Confidence 5777788889999888872 234567788999999998886532 23333 578888888872 11110
Q ss_pred h-h-ccccc-ccccccccccccCcchhch
Q 041505 203 G-L-FSSFE-ARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 203 ~-~-~~~l~-~l~~L~~l~l~~n~i~~~~ 228 (248)
. . ...+. ..|.|+.+.+.+|.|..+.
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 0 0 01111 2455666666666665554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=1.1e-11 Score=104.88 Aligned_cols=165 Identities=26% Similarity=0.287 Sum_probs=124.0
Q ss_pred chhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCc
Q 041505 5 VDDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 5 ~~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
.+++.+....+|..+..+..|..+.+.+|. +-.+|..+ .+..|++++++.|. ...+|..++.+| |+.|-+++ +..
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN-Nkl 155 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN-NKL 155 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec-Ccc
Confidence 455666677777666666777777777775 66677777 78888888885555 456677777776 78887776 467
Q ss_pred CcCCccccCCCCCcEEeccCccCCcccccccCCCC---ceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhh
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLE---ALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESV 160 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~---~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l 160 (248)
+.+|+.++....|..|+.+.|. ...+|..++.+. .|.+.. |.... +|..+. .-.|..||++.|++..+|-.|
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrR--n~l~~-lp~El~-~LpLi~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRR--NHLED-LPEELC-SLPLIRLDFSCNKISYLPVDF 230 (722)
T ss_pred ccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhh--hhhhh-CCHHHh-CCceeeeecccCceeecchhh
Confidence 7888888877888888888854 446676655544 555666 55553 777777 445899999999999999999
Q ss_pred hccCCcceecccCccccc
Q 041505 161 IQLSKLGRLYLRYWERLQ 178 (248)
Q Consensus 161 ~~~~~L~~L~l~~n~~~~ 178 (248)
.++++|++|-+.+|++..
T Consensus 231 r~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhheeeeeccCCCCC
Confidence 999999999999998643
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=5.8e-10 Score=83.20 Aligned_cols=125 Identities=26% Similarity=0.227 Sum_probs=38.5
Q ss_pred CCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCcccc-CCCCCcEE
Q 041505 22 NPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLC-KLKLLNYL 99 (248)
Q Consensus 22 l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L 99 (248)
..+++.|++.+|. +..+...- .+.+|+.|++++|.+ ..++ .+..+++|+.|++++|.+. .+.+.+. .+++|+.|
T Consensus 18 ~~~~~~L~L~~n~-I~~Ie~L~~~l~~L~~L~Ls~N~I-~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQ-ISTIENLGATLDKLEVLDLSNNQI-TKLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccc-cccccchhhhhcCCCEEECCCCCC-cccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 3456677777765 44333222 456677777744443 3333 2556666777777665433 3333332 35666666
Q ss_pred eccCccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch----hhhccCCcceeccc
Q 041505 100 TLNCCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE----SVIQLSKLGRLYLR 172 (248)
Q Consensus 100 ~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~----~l~~~~~L~~L~l~ 172 (248)
++++|.+. ... --..+..+++|+.|++.+|.+...+. .+..+|+|+.||-.
T Consensus 94 ~L~~N~I~--------------------~l~--~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKIS--------------------DLN--ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS-----------------------SCC--CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCC--------------------ChH--HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 66664332 111 11345667778888888887754432 35567777777643
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.5e-10 Score=95.22 Aligned_cols=205 Identities=20% Similarity=0.169 Sum_probs=132.2
Q ss_pred hhcCCCCccEEEccCCCCCcccCC--cc-ccCcccEEEcCCCCCcc--ccChhhhcccCCCEEeccCCcCcCcCCcc-cc
Q 041505 18 FKQNNPHIVVLNLRDCKSLKSLPA--GI-HLEFLKELDLLNGTAIE--ELPSAIECLYKLLHLDLEYCESLNSLPSG-LC 91 (248)
Q Consensus 18 ~l~~l~~L~~L~l~~~~~~~~~~~--~~-~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~ 91 (248)
.-.++.+|+...+.++. ++..+. .. .|++++.||+|.|-+.. .+......+|+|+.|+++.|......... -.
T Consensus 116 kQsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred HhhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 34567889999998876 555442 33 89999999997775432 33444678999999999987654332222 12
Q ss_pred CCCCCcEEeccCccCCc----ccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccc--hhhhccCC
Q 041505 92 KLKLLNYLTLNCCSNLQ----RLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIP--ESVIQLSK 165 (248)
Q Consensus 92 ~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp--~~l~~~~~ 165 (248)
.+++|+.|.++.|.+.+ .+...++++..|++..+.+... ......-+..|++|++++|.+-..+ ...+.++.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce--ecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 46789999999998864 3445778888888888431222 2222344557888899888886665 45677888
Q ss_pred cceecccCccccc-cCCC--------CCcccceeccccccccccchhhcccccccccccccccccCcchhc
Q 041505 166 LGRLYLRYWERLQ-SLPK--------LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMR 227 (248)
Q Consensus 166 L~~L~l~~n~~~~-~l~~--------~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~ 227 (248)
|..|+++.|.+.. ..|+ .+++|+.|++..++- ..+...+.+..+++|+.+.+..|.+...
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I--~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI--RDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc--ccccccchhhccchhhhhhccccccccc
Confidence 8888888875432 1222 257788888776532 1123334444556666666666665443
No 28
>PLN03150 hypothetical protein; Provisional
Probab=98.99 E-value=1.2e-09 Score=97.69 Aligned_cols=91 Identities=30% Similarity=0.391 Sum_probs=58.6
Q ss_pred ccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccC
Q 041505 25 IVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNC 103 (248)
Q Consensus 25 L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 103 (248)
++.|+|++|.+.+.+|..+ .+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|+.++.+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5566666666556666666 666666666666666556666666666666666666666666666666666666666666
Q ss_pred ccCCcccccccC
Q 041505 104 CSNLQRLPDELG 115 (248)
Q Consensus 104 ~~~~~~~~~~~~ 115 (248)
|++.+.+|..++
T Consensus 500 N~l~g~iP~~l~ 511 (623)
T PLN03150 500 NSLSGRVPAALG 511 (623)
T ss_pred CcccccCChHHh
Confidence 666666665443
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=2e-10 Score=105.39 Aligned_cols=92 Identities=37% Similarity=0.499 Sum_probs=74.0
Q ss_pred hHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCcc
Q 041505 12 LFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSG 89 (248)
Q Consensus 12 l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 89 (248)
+..++ +++..++.|++||+++|...+.+|..+ .+-+|++|+++++. +..+|..++++..|.+|++..+......|..
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccch
Confidence 44555 447779999999999988788999988 79999999995444 6688999999999999999887766666666
Q ss_pred ccCCCCCcEEeccCc
Q 041505 90 LCKLKLLNYLTLNCC 104 (248)
Q Consensus 90 l~~l~~L~~L~l~~~ 104 (248)
...+++|++|.+..-
T Consensus 638 ~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRS 652 (889)
T ss_pred hhhcccccEEEeecc
Confidence 666899999988653
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=5.2e-10 Score=95.13 Aligned_cols=148 Identities=36% Similarity=0.469 Sum_probs=64.2
Q ss_pred cCCCCccEEEccCCCCCcccCCcc-ccC-cccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCc
Q 041505 20 QNNPHIVVLNLRDCKSLKSLPAGI-HLE-FLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLN 97 (248)
Q Consensus 20 ~~l~~L~~L~l~~~~~~~~~~~~~-~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 97 (248)
...+.++.|++.+|. +..+++.. .+. +|+.|++++|. +..+|..++.+++|+.|++++|+ ..++|...+..++|+
T Consensus 113 ~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCcc-cccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 334455555555554 44444444 332 55555553333 33343345555555555555542 333344333455555
Q ss_pred EEeccCccCCcccccc--cC-CCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCc
Q 041505 98 YLTLNCCSNLQRLPDE--LG-NLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYW 174 (248)
Q Consensus 98 ~L~l~~~~~~~~~~~~--~~-~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n 174 (248)
.|++++|.+ ..+|.. .. .+.++.++. |... ..+..+..+.++..+.+.+|++..++..+..++.++.|++++|
T Consensus 190 ~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~--N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 190 NLDLSGNKI-SDLPPEIELLSALEELDLSN--NSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred heeccCCcc-ccCchhhhhhhhhhhhhhcC--Ccce-ecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence 555555332 233332 22 244444444 2111 1233333444444444444444333333444444444444444
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.91 E-value=5.3e-09 Score=93.64 Aligned_cols=103 Identities=26% Similarity=0.343 Sum_probs=55.7
Q ss_pred CCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCcccccccC---CCCceEecccCCcccccccccccCCCCcCeEEc
Q 041505 72 LLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPDELG---NLEALWISREAGVISRWLPENIGQLSSLGKLDL 148 (248)
Q Consensus 72 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l 148 (248)
++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++ +|+.|+++. |.+.+.+|..++++++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~--N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY--NSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCC--CCCCCCCchHHhcCCCCCEEEC
Confidence 34445555444445555555555555555555444444443222 233444444 4555556666777777777777
Q ss_pred cCCcCc-ccchhhhcc-CCcceecccCccc
Q 041505 149 QKNNFE-RIPESVIQL-SKLGRLYLRYWER 176 (248)
Q Consensus 149 ~~n~l~-~lp~~l~~~-~~L~~L~l~~n~~ 176 (248)
++|.++ .+|..+... .++..+++.+|..
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcc
Confidence 777764 666655442 3455666666643
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=2.2e-09 Score=91.35 Aligned_cols=190 Identities=29% Similarity=0.315 Sum_probs=138.2
Q ss_pred EEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhccc-CCCEEeccCCcCcCcCCccccCCCCCcEEeccCcc
Q 041505 27 VLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLY-KLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCS 105 (248)
Q Consensus 27 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 105 (248)
.++...+...........+..++.+++ .++.+.+++....... +|+.|++++|. ...+|..++.+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l-~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDL-DNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEec-CCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch
Confidence 467776653233333336678999999 5555677777677774 99999999864 55666678899999999999976
Q ss_pred CCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCccccc--cC
Q 041505 106 NLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQ--SL 180 (248)
Q Consensus 106 ~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~--~l 180 (248)
.. .+|. ....+..|++++ |.+. .+|........|+++.+++|.+...+..+..+..+..+.+..|+... ..
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~--N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 250 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSG--NKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES 250 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccC--Cccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccch
Confidence 65 4444 667788899988 5555 36766667777999999999776777778888999999988887654 33
Q ss_pred CCCCcccceeccccccccccchhhcccccccccccccccccCcchhc
Q 041505 181 PKLPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMR 227 (248)
Q Consensus 181 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~ 227 (248)
...+++++.|+++++ .+..++. +..+.+++.+++++|.+...
T Consensus 251 ~~~l~~l~~L~~s~n-~i~~i~~----~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 251 IGNLSNLETLDLSNN-QISSISS----LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hccccccceeccccc-ccccccc----ccccCccCEEeccCcccccc
Confidence 445577999998876 4444443 44566999999999877544
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=3.7e-09 Score=78.87 Aligned_cols=129 Identities=26% Similarity=0.263 Sum_probs=40.8
Q ss_pred CcccCCccccCcccEEEcCCCCCccccChhhh-cccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCccccccc
Q 041505 36 LKSLPAGIHLEFLKELDLLNGTAIEELPSAIE-CLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPDEL 114 (248)
Q Consensus 36 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 114 (248)
+...+.......+++|++++|.+ +.+.. ++ .+.+|+.|++++|.+. .+ +.+..+++|++|++++|
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I-~~Ie~-L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N---------- 74 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQI-STIEN-LGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNN---------- 74 (175)
T ss_dssp ----------------------------S---TT-TT--EEE-TTS--S----TT----TT--EEE--SS----------
T ss_pred ccccccccccccccccccccccc-ccccc-hhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCC----------
Confidence 44444444455677777755443 33332 44 4667777777776543 23 23556677777777664
Q ss_pred CCCCceEecccCCcccccccccc-cCCCCcCeEEccCCcCcccc--hhhhccCCcceecccCccccccCCC-------CC
Q 041505 115 GNLEALWISREAGVISRWLPENI-GQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLYLRYWERLQSLPK-------LP 184 (248)
Q Consensus 115 ~~l~~L~l~~~~n~~~~~~~~~l-~~~~~L~~L~l~~n~l~~lp--~~l~~~~~L~~L~l~~n~~~~~l~~-------~~ 184 (248)
.+.. +...+ ..+++|++|++++|++..+. ..+..+++|++|++.+|+.... +. .+
T Consensus 75 -------------~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~l 139 (175)
T PF14580_consen 75 -------------RISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKL 139 (175)
T ss_dssp ----------------S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-
T ss_pred -------------CCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHc
Confidence 3332 32233 35788999999999886543 4567889999999999976532 22 13
Q ss_pred cccceeccc
Q 041505 185 CKLHELDAH 193 (248)
Q Consensus 185 ~~L~~L~l~ 193 (248)
|+|+.||-.
T Consensus 140 P~Lk~LD~~ 148 (175)
T PF14580_consen 140 PSLKVLDGQ 148 (175)
T ss_dssp TT-SEETTE
T ss_pred ChhheeCCE
Confidence 556666543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=1.4e-09 Score=85.99 Aligned_cols=127 Identities=21% Similarity=0.161 Sum_probs=85.3
Q ss_pred CCCcEEeccCccCCcccc---cccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceec
Q 041505 94 KLLNYLTLNCCSNLQRLP---DELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLY 170 (248)
Q Consensus 94 ~~L~~L~l~~~~~~~~~~---~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~ 170 (248)
+.|+.+|+++|.+. .+. .-+++++.|+++. |.+. ...+++.+++|+.||+++|.++.+..|-.++.++++|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~--N~i~--~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQ--NRIR--TVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccc--ccee--eehhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 45777777775443 222 2355666777777 5555 34557788888888888888887777777788888888
Q ss_pred ccCccccccCCCC--CcccceeccccccccccchhhcccccccccccccccccCcchhch
Q 041505 171 LRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 171 l~~n~~~~~l~~~--~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~ 228 (248)
+.+|.+ +.+... +-+|..||+.++ +++.+ ...+++..+|.|..+.+.+|.+....
T Consensus 359 La~N~i-E~LSGL~KLYSLvnLDl~~N-~Ie~l-deV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 359 LAQNKI-ETLSGLRKLYSLVNLDLSSN-QIEEL-DEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhhH-hhhhhhHhhhhheecccccc-chhhH-HHhcccccccHHHHHhhcCCCccccc
Confidence 888843 333221 356777787775 44444 34566778888888888888877653
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.74 E-value=2.3e-09 Score=86.04 Aligned_cols=203 Identities=17% Similarity=0.092 Sum_probs=136.9
Q ss_pred ccCcccEEEcCCCCCccc----cChhhhcccCCCEEeccCCcCcCcC----Cc-------cccCCCCCcEEeccCccCCc
Q 041505 44 HLEFLKELDLLNGTAIEE----LPSAIECLYKLLHLDLEYCESLNSL----PS-------GLCKLKLLNYLTLNCCSNLQ 108 (248)
Q Consensus 44 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~----~~-------~l~~l~~L~~L~l~~~~~~~ 108 (248)
....++++++++|++..+ +...+.+.++|+..++++ -+++.. |+ .+-.+++|++++++.|.+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 678899999999988764 345567788999999986 556543 33 34456799999999988765
Q ss_pred cccccc-------CCCCceEecccCCccc-cc----------ccccccCCCCcCeEEccCCcCc-----ccchhhhccCC
Q 041505 109 RLPDEL-------GNLEALWISREAGVIS-RW----------LPENIGQLSSLGKLDLQKNNFE-----RIPESVIQLSK 165 (248)
Q Consensus 109 ~~~~~~-------~~l~~L~l~~~~n~~~-~~----------~~~~l~~~~~L~~L~l~~n~l~-----~lp~~l~~~~~ 165 (248)
..+..+ ..|.+|++.+|+-... +. .....+.-++|+++....|++. .+...+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 555433 3455888877642111 11 1112456679999999999884 34446677899
Q ss_pred cceecccCccccccCC-------CCCcccceeccccccccccchhh-cccccccccccccccccCcchhchH-HHHHHH-
Q 041505 166 LGRLYLRYWERLQSLP-------KLPCKLHELDAHHCTALESLSGL-FSSFEARTRYFDLRYNYNWIEMRSE-EFLKML- 235 (248)
Q Consensus 166 L~~L~l~~n~~~~~l~-------~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~l~~L~~l~l~~n~i~~~~~-~~~~~l- 235 (248)
|+.+.+++|.+...-. ...+.|++|++.++.--..-... -..++.++.|++++++++-++..+. .+++++
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 9999999997543211 12477888888776332222111 1333466789999999999998884 555666
Q ss_pred --HhhhhheecccC
Q 041505 236 --CKKLNFWQLHYG 247 (248)
Q Consensus 236 --~~~l~~~~~~~~ 247 (248)
.+.++...|.|+
T Consensus 267 ~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 267 ESAPSLEVLELAGN 280 (382)
T ss_pred ccCCCCceeccCcc
Confidence 556777777665
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=2e-08 Score=61.75 Aligned_cols=57 Identities=32% Similarity=0.392 Sum_probs=25.9
Q ss_pred cccEEEcCCCCCccccC-hhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCc
Q 041505 47 FLKELDLLNGTAIEELP-SAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCC 104 (248)
Q Consensus 47 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 104 (248)
+|++|++++|.+ ..+| .+|.++++|++|++++|.+....|..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344555543322 2333 33445555555555544443333344455555555555544
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.1e-08 Score=84.46 Aligned_cols=156 Identities=20% Similarity=0.160 Sum_probs=76.0
Q ss_pred hcCCCCccEEEccCCCCCcc--cCCcc-ccCcccEEEcCCCCCccccCh-hhhcccCCCEEeccCCcCcCc-CCccccCC
Q 041505 19 KQNNPHIVVLNLRDCKSLKS--LPAGI-HLEFLKELDLLNGTAIEELPS-AIECLYKLLHLDLEYCESLNS-LPSGLCKL 93 (248)
Q Consensus 19 l~~l~~L~~L~l~~~~~~~~--~~~~~-~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l 93 (248)
...+++++.||+++|-+... +.+.. .+|+|+.|+++.|....-... .-..+++|+.|.++.|.+.-. +......+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 34466777777777643332 12222 667777777766654332211 122456666666666655422 11223345
Q ss_pred CCCcEEeccCccCC--cccc-cccCCCCceEecccCCcccc-cccccccCCCCcCeEEccCCcCccc--chh-----hhc
Q 041505 94 KLLNYLTLNCCSNL--QRLP-DELGNLEALWISREAGVISR-WLPENIGQLSSLGKLDLQKNNFERI--PES-----VIQ 162 (248)
Q Consensus 94 ~~L~~L~l~~~~~~--~~~~-~~~~~l~~L~l~~~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~l--p~~-----l~~ 162 (248)
|+|+.|.+..|... ...+ +.+..+++|+++++ ...+ ......+.++.|+.++++.+++..+ |.. ...
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N--~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNN--NLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCC--cccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 66666666655321 1111 12334556666652 2221 1123455566666666666655422 211 234
Q ss_pred cCCcceecccCccc
Q 041505 163 LSKLGRLYLRYWER 176 (248)
Q Consensus 163 ~~~L~~L~l~~n~~ 176 (248)
+++|++|++..|++
T Consensus 300 f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 300 FPKLEYLNISENNI 313 (505)
T ss_pred cccceeeecccCcc
Confidence 56666666666654
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.66 E-value=2.9e-09 Score=84.25 Aligned_cols=126 Identities=25% Similarity=0.239 Sum_probs=93.7
Q ss_pred ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCcc--cccccCCCCceE
Q 041505 44 HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQR--LPDELGNLEALW 121 (248)
Q Consensus 44 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~ 121 (248)
....|+++|+++|. ++.+.+++.-.|+++.|++++|.+... +++..+++|+.||+++|.+... .-..+++.+.|.
T Consensus 282 TWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 35678888996665 566777788889999999998765432 3377788999999998655422 234677788888
Q ss_pred ecccCCcccccccccccCCCCcCeEEccCCcCcccc--hhhhccCCcceecccCccc
Q 041505 122 ISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLYLRYWER 176 (248)
Q Consensus 122 l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp--~~l~~~~~L~~L~l~~n~~ 176 (248)
++. |.+. --+.++.+.+|..||+.+|++..+. ..+++++.|+++.+.+|++
T Consensus 359 La~--N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQ--NKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhh--hhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 888 5555 3456788888899999999887654 4788889999988888864
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.61 E-value=5.6e-08 Score=59.73 Aligned_cols=58 Identities=33% Similarity=0.437 Sum_probs=47.7
Q ss_pred CCccEEEccCCCCCcccCC-cc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCc
Q 041505 23 PHIVVLNLRDCKSLKSLPA-GI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCE 81 (248)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 81 (248)
++|++|++++|. +..+|+ .+ .+++|++|++++|.+...-|..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999997 666665 55 89999999998777654445679999999999999875
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.58 E-value=4.2e-08 Score=90.39 Aligned_cols=101 Identities=36% Similarity=0.546 Sum_probs=73.3
Q ss_pred CCccEEEccCCCC-CcccCCc-c-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEE
Q 041505 23 PHIVVLNLRDCKS-LKSLPAG-I-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYL 99 (248)
Q Consensus 23 ~~L~~L~l~~~~~-~~~~~~~-~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 99 (248)
++|+.|-+.+|.. ...++.. + .++.|++||+++|....++|..++++.+||+|+++++ ....+|.++++++.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence 3677777777652 3444443 3 7888888888888877888888888888888888874 556888888888888888
Q ss_pred eccCccCCccccc---ccCCCCceEecc
Q 041505 100 TLNCCSNLQRLPD---ELGNLEALWISR 124 (248)
Q Consensus 100 ~l~~~~~~~~~~~---~~~~l~~L~l~~ 124 (248)
++..+.....+|. .+.+|++|.+..
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccccccccccchhhhcccccEEEeec
Confidence 8877665555544 355666666654
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=4.9e-09 Score=82.79 Aligned_cols=41 Identities=27% Similarity=0.254 Sum_probs=17.6
Q ss_pred hhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccC
Q 041505 66 IECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSN 106 (248)
Q Consensus 66 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 106 (248)
+..|.+|+.|.+.++.....+...+.+-.+|+.++++.|+.
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG 246 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG 246 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc
Confidence 34444444444444333333333344444444444444433
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.5e-08 Score=80.07 Aligned_cols=175 Identities=19% Similarity=0.170 Sum_probs=121.4
Q ss_pred CCccEEEccCCCCCcc-cCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCc--cccCCCCCcE
Q 041505 23 PHIVVLNLRDCKSLKS-LPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPS--GLCKLKLLNY 98 (248)
Q Consensus 23 ~~L~~L~l~~~~~~~~-~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~ 98 (248)
..|++||++...+... +-..+ .|.+|+.|.+.++.....+...+..-.+|+.++++.|...++... -+.+++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3588899998654332 22333 788999999977777776777788888999999998876665432 3567899999
Q ss_pred EeccCccCCccccc-----ccCCCCceEecccCCcccc-cccccccCCCCcCeEEccCCcC-c-ccchhhhccCCcceec
Q 041505 99 LTLNCCSNLQRLPD-----ELGNLEALWISREAGVISR-WLPENIGQLSSLGKLDLQKNNF-E-RIPESVIQLSKLGRLY 170 (248)
Q Consensus 99 L~l~~~~~~~~~~~-----~~~~l~~L~l~~~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l-~-~lp~~l~~~~~L~~L~ 170 (248)
|++++|........ --..++.|+++++.-.+.. .+..-..++++|..||+++|-. + ..-..+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99999987654322 1224668888876533322 2333467889999999998854 2 3334677889999999
Q ss_pred ccCccccccC----CCCCcccceeccccccc
Q 041505 171 LRYWERLQSL----PKLPCKLHELDAHHCTA 197 (248)
Q Consensus 171 l~~n~~~~~l----~~~~~~L~~L~l~~~~~ 197 (248)
++.|..+..- -...|+|.+|++.+|-.
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 9999754210 12347888898888743
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.40 E-value=1.1e-07 Score=74.41 Aligned_cols=214 Identities=15% Similarity=0.104 Sum_probs=134.6
Q ss_pred cchHhhhhhhcCCCCccEEEccCCCCCcccCC----cc-ccCcccEEEcCCCCCc---cccC-------hhhhcccCCCE
Q 041505 10 LELFSLYAFKQNNPHIVVLNLRDCKSLKSLPA----GI-HLEFLKELDLLNGTAI---EELP-------SAIECLYKLLH 74 (248)
Q Consensus 10 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~----~~-~l~~L~~L~l~~~~~~---~~~~-------~~~~~l~~L~~ 74 (248)
..++.+-..+..+..++.+++|+|.+.+.... .+ .-.+|+..++++--.. .+++ .++-+||+|+.
T Consensus 17 eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~ 96 (388)
T COG5238 17 EDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQK 96 (388)
T ss_pred chhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence 34445555566789999999999985554333 23 5567888887543211 1222 34668999999
Q ss_pred EeccCCcCcCcCCcc----ccCCCCCcEEeccCccCCccccc-----------------ccCCCCceEecccCCccc-cc
Q 041505 75 LDLEYCESLNSLPSG----LCKLKLLNYLTLNCCSNLQRLPD-----------------ELGNLEALWISREAGVIS-RW 132 (248)
Q Consensus 75 L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~-----------------~~~~l~~L~l~~~~n~~~-~~ 132 (248)
.++++|-+..+.|+. +.+.+.|.+|.+++|.+ |.+.. .-+.|.....++ |... +.
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgr--NRlengs 173 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR--NRLENGS 173 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEecc--chhccCc
Confidence 999999888777754 45568999999998654 33321 112344555555 3332 11
Q ss_pred ---ccccccCCCCcCeEEccCCcCc-c----c-chhhhccCCcceecccCccccc--------cCCCCCcccceeccccc
Q 041505 133 ---LPENIGQLSSLGKLDLQKNNFE-R----I-PESVIQLSKLGRLYLRYWERLQ--------SLPKLPCKLHELDAHHC 195 (248)
Q Consensus 133 ---~~~~l~~~~~L~~L~l~~n~l~-~----l-p~~l~~~~~L~~L~l~~n~~~~--------~l~~~~~~L~~L~l~~~ 195 (248)
....+.....|.++.+..|.|. + + -..+..+.+|+.||++.|.+.. .++.| +.|+.|.+.+|
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W-~~lrEL~lnDC 252 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW-NLLRELRLNDC 252 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc-chhhhccccch
Confidence 1223555578999999999884 1 1 1245678999999999997642 23334 45899998888
Q ss_pred cccc-cchhhccccc--ccccccccccccCcchhc
Q 041505 196 TALE-SLSGLFSSFE--ARTRYFDLRYNYNWIEMR 227 (248)
Q Consensus 196 ~~l~-~~~~~~~~l~--~l~~L~~l~l~~n~i~~~ 227 (248)
-.-. -...-+..++ ..|+|..|...+|.+...
T Consensus 253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred hhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 2211 1111112222 567888999999977654
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.39 E-value=7.2e-08 Score=82.54 Aligned_cols=101 Identities=26% Similarity=0.196 Sum_probs=63.1
Q ss_pred hcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCc
Q 041505 19 KQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLN 97 (248)
Q Consensus 19 l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 97 (248)
+..+++++.|++.+|. +..+...+ .+++|++|++++|.+.+..+ +..++.|+.|++.+|.+.. + ..+..+++|+
T Consensus 91 l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD-I-SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccc-hhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchh-c-cCCccchhhh
Confidence 5667778888888876 55555534 67888888886666544322 5666668888887765432 2 2344577777
Q ss_pred EEeccCccCCcccc---cccCCCCceEecc
Q 041505 98 YLTLNCCSNLQRLP---DELGNLEALWISR 124 (248)
Q Consensus 98 ~L~l~~~~~~~~~~---~~~~~l~~L~l~~ 124 (248)
.++++.|.....-+ ..+.++..+++..
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGG 195 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccC
Confidence 88877766654444 4444555555555
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.32 E-value=3.5e-07 Score=71.64 Aligned_cols=211 Identities=21% Similarity=0.148 Sum_probs=135.4
Q ss_pred HhhhhhhcCCCCccEEEccCCCCCc----c-------cCCcc-ccCcccEEEcCCCCCccccChh----hhcccCCCEEe
Q 041505 13 FSLYAFKQNNPHIVVLNLRDCKSLK----S-------LPAGI-HLEFLKELDLLNGTAIEELPSA----IECLYKLLHLD 76 (248)
Q Consensus 13 ~~l~~~l~~l~~L~~L~l~~~~~~~----~-------~~~~~-~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~ 76 (248)
++++..++.-++|++.++++- +++ . +.+.+ .||.|+.+++|+|-+....|+. +.....|.+|.
T Consensus 48 e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~ 126 (388)
T COG5238 48 EELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLK 126 (388)
T ss_pred HHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEE
Confidence 446667888889999999983 455 2 22234 8899999999999887776654 55677899999
Q ss_pred ccCCcCcCcCCc-cc-------------cCCCCCcEEeccCccCCccccc--------ccCCCCceEecccCCccccc--
Q 041505 77 LEYCESLNSLPS-GL-------------CKLKLLNYLTLNCCSNLQRLPD--------ELGNLEALWISREAGVISRW-- 132 (248)
Q Consensus 77 l~~~~~~~~~~~-~l-------------~~l~~L~~L~l~~~~~~~~~~~--------~~~~l~~L~l~~~~n~~~~~-- 132 (248)
+++|. .+.+.. -+ ..-|.|++.....|++. ..+. .-..++.+.+-. |.+..+
T Consensus 127 l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~q--NgIrpegv 202 (388)
T COG5238 127 LNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQ--NGIRPEGV 202 (388)
T ss_pred eecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeee--cCcCcchh
Confidence 99864 443321 12 23478999999887654 2222 223566777776 444422
Q ss_pred ---ccccccCCCCcCeEEccCCcCcc-----cchhhhccCCcceecccCccccccCC---------CCCcccceeccccc
Q 041505 133 ---LPENIGQLSSLGKLDLQKNNFER-----IPESVIQLSKLGRLYLRYWERLQSLP---------KLPCKLHELDAHHC 195 (248)
Q Consensus 133 ---~~~~l~~~~~L~~L~l~~n~l~~-----lp~~l~~~~~L~~L~l~~n~~~~~l~---------~~~~~L~~L~l~~~ 195 (248)
+...+..+.+|+.||+.+|.++. +...+..++.|+.|.+..|-+...-. ...++|..|...++
T Consensus 203 ~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 203 TMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 22245677899999999998853 22344567889999999884322111 12366777765544
Q ss_pred cccc--cchhhccccc--ccccccccccccCcchhch
Q 041505 196 TALE--SLSGLFSSFE--ARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 196 ~~l~--~~~~~~~~l~--~l~~L~~l~l~~n~i~~~~ 228 (248)
..-. ......+.+. +.|-|..+.+++|+|....
T Consensus 283 e~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 283 ERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred hhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 1111 1111122222 7789999999999997653
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.27 E-value=5.5e-06 Score=69.58 Aligned_cols=157 Identities=22% Similarity=0.343 Sum_probs=87.8
Q ss_pred hcCCCCccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcE
Q 041505 19 KQNNPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNY 98 (248)
Q Consensus 19 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 98 (248)
+..+.+++.|++++|. +..+|. + -..|++|.+++|.....+|..+ .++|++|.+++|.....+|.. |+.
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~-L-P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV-L-PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC-C-CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cce
Confidence 4456788888888885 666662 1 1258888887777777777544 257888888887555555543 555
Q ss_pred EeccCccC--CcccccccCCCCceEecccCCcccccccccccCC-CCcCeEEccCCcCcccchhhhccCCcceecccCcc
Q 041505 99 LTLNCCSN--LQRLPDELGNLEALWISREAGVISRWLPENIGQL-SSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWE 175 (248)
Q Consensus 99 L~l~~~~~--~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~-~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~ 175 (248)
|++..+.. .+.+|.. |+.|.+..........+|. .+ ++|+.|++++|....+|..+. .+|+.|+++.+.
T Consensus 117 L~L~~n~~~~L~~LPss---Lk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 117 LEIKGSATDSIKNVPNG---LTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred EEeCCCCCcccccCcch---Hhheecccccccccccccc---ccCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 66654222 3344443 4455553211000000111 12 478888888877655554432 577777776552
Q ss_pred ccc---cCCCCCcccceeccccc
Q 041505 176 RLQ---SLPKLPCKLHELDAHHC 195 (248)
Q Consensus 176 ~~~---~l~~~~~~L~~L~l~~~ 195 (248)
... .....++++ .|.+.+|
T Consensus 189 ~~sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 189 KTTWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred cccccCccccccccc-Eechhhh
Confidence 111 111233455 6666665
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.22 E-value=2.3e-07 Score=79.48 Aligned_cols=217 Identities=24% Similarity=0.145 Sum_probs=133.4
Q ss_pred cchhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCc
Q 041505 4 LVDDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 4 l~~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
.+++..+.++.+...+..+++|++|++++|. ++.+...-.++.|+.|++++|.+.. +.. +..++.|+.+++++|.+.
T Consensus 99 ~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N~i~~-~~~-~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 99 ALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGNLISD-ISG-LESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccCcchh-ccC-CccchhhhcccCCcchhh
Confidence 3456677788886558889999999999997 7766554477789999997777643 332 556899999999997654
Q ss_pred CcCCccccCCCCCcEEeccCccCCcccc-cccCCCCceEecccCCcccccccccccCCC--CcCeEEccCCcCcccchhh
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNLQRLP-DELGNLEALWISREAGVISRWLPENIGQLS--SLGKLDLQKNNFERIPESV 160 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~--~L~~L~l~~n~l~~lp~~l 160 (248)
..-+.....+.+++.+.+.+|....... .....+..+.+.. |.+. ....+.... +|+.+++++|++...+..+
T Consensus 176 ~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~--n~i~--~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~ 251 (414)
T KOG0531|consen 176 DIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLD--NKIS--KLEGLNELVMLHLRELYLSGNRISRSPEGL 251 (414)
T ss_pred hhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhccc--ccce--eccCcccchhHHHHHHhcccCccccccccc
Confidence 4333104678899999998865542221 1222233334444 3333 112233333 3889999999998776677
Q ss_pred hccCCcceecccCccccccC-CCCCcccceeccccccccccc-hhhcccccccccccccccccCcchhc
Q 041505 161 IQLSKLGRLYLRYWERLQSL-PKLPCKLHELDAHHCTALESL-SGLFSSFEARTRYFDLRYNYNWIEMR 227 (248)
Q Consensus 161 ~~~~~L~~L~l~~n~~~~~l-~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~l~~L~~l~l~~n~i~~~ 227 (248)
..+..+..+++..|+....- ....+.+..+........... ..........+.+....+..|.+...
T Consensus 252 ~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 252 ENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cccccccccchhhccccccccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 78888889998888653211 112233344433333211111 11111133566777777777766554
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=1.2e-05 Score=67.52 Aligned_cols=135 Identities=25% Similarity=0.326 Sum_probs=85.2
Q ss_pred ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCcccccccCCCCceEec
Q 041505 44 HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWIS 123 (248)
Q Consensus 44 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~ 123 (248)
.+.+++.|++++| .+..+|. --.+|+.|.+++|.....+|+.+ .++|++|++++|.....+|.. ++.|++.
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s---Le~L~L~ 120 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES---VRSLEIK 120 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc---cceEEeC
Confidence 4788999999777 4566662 12359999998877777777654 257999999988666666654 5555665
Q ss_pred ccCCcccccccccccCCCCcCeEEccCCcC---cccchhhhccCCcceecccCccccccCCCCCcccceeccccc
Q 041505 124 REAGVISRWLPENIGQLSSLGKLDLQKNNF---ERIPESVIQLSKLGRLYLRYWERLQSLPKLPCKLHELDAHHC 195 (248)
Q Consensus 124 ~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l---~~lp~~l~~~~~L~~L~l~~n~~~~~l~~~~~~L~~L~l~~~ 195 (248)
.......+.+|. +|+.|.+.++.. ..+|.. -.++|++|++++|.....-+..+.+|+.|.++.+
T Consensus 121 ~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 121 GSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred CCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 421111223443 466666644321 112211 1268999999998755422336688999998764
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=6.1e-06 Score=46.81 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=28.2
Q ss_pred CCcCeEEccCCcCcccchhhhccCCcceecccCccc
Q 041505 141 SSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWER 176 (248)
Q Consensus 141 ~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~ 176 (248)
++|+.|++++|+++.+|..++++++|++|++++|++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 468888888888888887788888888888888854
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.93 E-value=4.4e-07 Score=79.88 Aligned_cols=153 Identities=21% Similarity=0.160 Sum_probs=96.1
Q ss_pred hhhhcCCCCccEEEccCCCCCc--------------------------------ccCCccccCcccEEEcCCCCCccccC
Q 041505 16 YAFKQNNPHIVVLNLRDCKSLK--------------------------------SLPAGIHLEFLKELDLLNGTAIEELP 63 (248)
Q Consensus 16 ~~~l~~l~~L~~L~l~~~~~~~--------------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~ 63 (248)
|-.+.-++.|++|.+.+|.+.. ++..+...-.|...+.+ +|....+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fs-yN~L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFS-YNRLVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcc-hhhHHhHH
Confidence 3456678899999999886322 11111122234444552 33334455
Q ss_pred hhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCccccc---ccCCCCceEecccCCcccccccccccCC
Q 041505 64 SAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPD---ELGNLEALWISREAGVISRWLPENIGQL 140 (248)
Q Consensus 64 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~ 140 (248)
.++.-++.++.|++++|+.... +.+..+++|++||++.|.+ ..+|. .-.+|..|.+++ |... --..+.++
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~L~~L~lrn--N~l~--tL~gie~L 253 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCL-RHVPQLSMVGCKLQLLNLRN--NALT--TLRGIENL 253 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchh-ccccccchhhhhheeeeecc--cHHH--hhhhHHhh
Confidence 5677788888888888765543 2677888899999888554 34443 222355666766 4444 23457778
Q ss_pred CCcCeEEccCCcCcccc--hhhhccCCcceecccCccc
Q 041505 141 SSLGKLDLQKNNFERIP--ESVIQLSKLGRLYLRYWER 176 (248)
Q Consensus 141 ~~L~~L~l~~n~l~~lp--~~l~~~~~L~~L~l~~n~~ 176 (248)
.+|+.||++.|-+.... ..++.+..|+.|.+.+|++
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 88888888888663221 3466778888888888865
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=2.3e-06 Score=67.96 Aligned_cols=179 Identities=19% Similarity=0.088 Sum_probs=82.7
Q ss_pred ccCcccEEEcCCCCCcc--ccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCc----ccccccCCC
Q 041505 44 HLEFLKELDLLNGTAIE--ELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQ----RLPDELGNL 117 (248)
Q Consensus 44 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~l 117 (248)
.+..++.+|+..|.++. ++...+.++|.|+.|+++.|.....+...-....+|++|-+.+..+.+ +..+.++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45566666665554432 333445566666666666654433322111234456666555533221 222334444
Q ss_pred CceEecccC--------Ccccc-------------------cccccccCCCCcCeEEccCCcCcccc--hhhhccCCcce
Q 041505 118 EALWISREA--------GVISR-------------------WLPENIGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGR 168 (248)
Q Consensus 118 ~~L~l~~~~--------n~~~~-------------------~~~~~l~~~~~L~~L~l~~n~l~~lp--~~l~~~~~L~~ 168 (248)
++|+++.+. +.... .+......+++++.+.++.|.++... .....++.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 444444421 00000 01111133455555566666553322 23334555556
Q ss_pred ecccCccccccCC-----CCCcccceeccccccccccchhhcc---cccccccccccccccCcch
Q 041505 169 LYLRYWERLQSLP-----KLPCKLHELDAHHCTALESLSGLFS---SFEARTRYFDLRYNYNWIE 225 (248)
Q Consensus 169 L~l~~n~~~~~l~-----~~~~~L~~L~l~~~~~l~~~~~~~~---~l~~l~~L~~l~l~~n~i~ 225 (248)
|+++.+.+- .+. ..+++|.-|.+++.+.++.+..... -+.++++++.|+-+ .|.
T Consensus 229 LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIs 290 (418)
T KOG2982|consen 229 LNLGANNID-SWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KIS 290 (418)
T ss_pred hhhcccccc-cHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccc
Confidence 666665432 111 1246667777766665554433221 12277777776644 554
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=4.1e-05 Score=61.08 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=35.7
Q ss_pred cccCCCCcCeEEccCCcCcccc--hhhhccCCcceecccCccccccCC
Q 041505 136 NIGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLYLRYWERLQSLP 181 (248)
Q Consensus 136 ~l~~~~~L~~L~l~~n~l~~lp--~~l~~~~~L~~L~l~~n~~~~~l~ 181 (248)
....++.+--|+++.+++..+. ..+++++.|+.|.+..+++...+.
T Consensus 219 ~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 219 GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 4566677778888888886554 367899999999999998876554
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=6e-06 Score=72.98 Aligned_cols=96 Identities=29% Similarity=0.457 Sum_probs=67.0
Q ss_pred ccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCccccccCCC---CCcccceeccccccccccchhhccccc
Q 041505 133 LPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPK---LPCKLHELDAHHCTALESLSGLFSSFE 209 (248)
Q Consensus 133 ~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~ 209 (248)
+-.++.-++.++.|++++|+++... .+..+++|++||+++|.+ ..+|. .-..|..|.++++ .++.+. .+.
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~L~~L~lrnN-~l~tL~----gie 251 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCL-RHVPQLSMVGCKLQLLNLRNN-ALTTLR----GIE 251 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchh-ccccccchhhhhheeeeeccc-HHHhhh----hHH
Confidence 4445667788999999999998774 778899999999999964 34443 3356888888775 334432 244
Q ss_pred ccccccccccccCcchhc-hHHHHHHH
Q 041505 210 ARTRYFDLRYNYNWIEMR-SEEFLKML 235 (248)
Q Consensus 210 ~l~~L~~l~l~~n~i~~~-~~~~~~~l 235 (248)
++.+|.-||+++|-+..- ..+++-++
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsL 278 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSL 278 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHH
Confidence 667888888888877543 23444444
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=2.7e-05 Score=70.45 Aligned_cols=133 Identities=18% Similarity=0.116 Sum_probs=75.1
Q ss_pred CCCcEEeccCccCCcc-cc----cccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcce
Q 041505 94 KLLNYLTLNCCSNLQR-LP----DELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGR 168 (248)
Q Consensus 94 ~~L~~L~l~~~~~~~~-~~----~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~ 168 (248)
.+|++|++++...... .| .-+|.|++|.+.+.. -..+++.....++++|..||++++.++.+ ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 4566666665333211 11 134556666666532 22223444566777888888888877766 56777777777
Q ss_pred ecccCccccc--cCCC--CCcccceeccccccccccc---hhhcccccccccccccccccCcchhch
Q 041505 169 LYLRYWERLQ--SLPK--LPCKLHELDAHHCTALESL---SGLFSSFEARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 169 L~l~~n~~~~--~l~~--~~~~L~~L~l~~~~~l~~~---~~~~~~l~~l~~L~~l~l~~n~i~~~~ 228 (248)
|.+.+-.+.. .+-+ .+.+|++||+|.-...... .+-......+|+|+.||.+++.+...-
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 7766543321 1111 1377788887764333222 111233336888888888887766543
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.61 E-value=8.5e-06 Score=57.60 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=44.7
Q ss_pred hcCCCCccEEEccCCCCCcccCCcc--ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCC
Q 041505 19 KQNNPHIVVLNLRDCKSLKSLPAGI--HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLL 96 (248)
Q Consensus 19 l~~l~~L~~L~l~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 96 (248)
+....+|+..++++|. ...+|+.+ .++..+.+++ .++.+.++|..+..++.|+.+++++|. ....|.-+..+.++
T Consensus 49 l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl-~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNL-ANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKL 125 (177)
T ss_pred HhCCceEEEEecccch-hhhCCHHHhhccchhhhhhc-chhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhH
Confidence 3334555556666654 55555555 4456666666 333345556556666666666666543 33444445555555
Q ss_pred cEEeccC
Q 041505 97 NYLTLNC 103 (248)
Q Consensus 97 ~~L~l~~ 103 (248)
.+|+..+
T Consensus 126 ~~Lds~~ 132 (177)
T KOG4579|consen 126 DMLDSPE 132 (177)
T ss_pred HHhcCCC
Confidence 5555544
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.60 E-value=8.8e-05 Score=42.01 Aligned_cols=33 Identities=36% Similarity=0.459 Sum_probs=13.5
Q ss_pred cccEEEcCCCCCccccChhhhcccCCCEEeccCC
Q 041505 47 FLKELDLLNGTAIEELPSAIECLYKLLHLDLEYC 80 (248)
Q Consensus 47 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 80 (248)
+|++|++++|.+ ..+|..++++++|++|++++|
T Consensus 2 ~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQI-TDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCC-cccCchHhCCCCCCEEEecCC
Confidence 344444433332 233433444444444444444
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=3e-05 Score=70.13 Aligned_cols=147 Identities=20% Similarity=0.172 Sum_probs=81.6
Q ss_pred CCccEEEccCCCCCcc-cCCcc--ccCcccEEEcCCCCCcc-ccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcE
Q 041505 23 PHIVVLNLRDCKSLKS-LPAGI--HLEFLKELDLLNGTAIE-ELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNY 98 (248)
Q Consensus 23 ~~L~~L~l~~~~~~~~-~~~~~--~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 98 (248)
.+|+.|++++...... =|..+ .+|.|+.|.+++-.... ++-....++|+|+.||++++++. .+ .+++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 5788888887543321 12222 57888888885544432 22334567888888888885443 33 56778888888
Q ss_pred EeccCccCCccc-c---cccCCCCceEecccCCccccccc----ccccCCCCcCeEEccCCcCc-c-cchhhhccCCcce
Q 041505 99 LTLNCCSNLQRL-P---DELGNLEALWISREAGVISRWLP----ENIGQLSSLGKLDLQKNNFE-R-IPESVIQLSKLGR 168 (248)
Q Consensus 99 L~l~~~~~~~~~-~---~~~~~l~~L~l~~~~n~~~~~~~----~~l~~~~~L~~L~l~~n~l~-~-lp~~l~~~~~L~~ 168 (248)
|.+.+-.+.... - -.+.+|+.|+++...+.....+. +.-..+++|+.||.+++.+. . +...+..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 877653333210 0 13555666776663322111111 12234678888888877763 2 2223344455555
Q ss_pred ecc
Q 041505 169 LYL 171 (248)
Q Consensus 169 L~l 171 (248)
+.+
T Consensus 280 i~~ 282 (699)
T KOG3665|consen 280 IAA 282 (699)
T ss_pred hhh
Confidence 443
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.47 E-value=1.2e-05 Score=66.65 Aligned_cols=215 Identities=17% Similarity=0.161 Sum_probs=101.2
Q ss_pred cchhhccchHhhh-hhh-cCCCCccEEEccCCCCCcc--cCCcc-ccCcccEEEcCCCCCcccc--ChhhhcccCCCEEe
Q 041505 4 LVDDHALELFSLY-AFK-QNNPHIVVLNLRDCKSLKS--LPAGI-HLEFLKELDLLNGTAIEEL--PSAIECLYKLLHLD 76 (248)
Q Consensus 4 l~~~~~~~l~~l~-~~l-~~l~~L~~L~l~~~~~~~~--~~~~~-~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~ 76 (248)
+...+|..++... +.+ ..+++|.+|++++|.-+.. +.... ++..++.+..++|.....- -..-..++.+..++
T Consensus 195 l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 195 LNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN 274 (483)
T ss_pred hhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccc
Confidence 3334444444433 222 2355566666666543322 11111 4444555544444332210 00112233445555
Q ss_pred ccCCcCcCcCCc--cccCCCCCcEEeccCccCCcccc-----cccCCCCceEecccCCccccc-ccccccCCCCcCeEEc
Q 041505 77 LEYCESLNSLPS--GLCKLKLLNYLTLNCCSNLQRLP-----DELGNLEALWISREAGVISRW-LPENIGQLSSLGKLDL 148 (248)
Q Consensus 77 l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~-----~~~~~l~~L~l~~~~n~~~~~-~~~~l~~~~~L~~L~l 148 (248)
+..|...++.-- .-..+..||+++.++|...+..+ +.-.+++.+.+..|.. +.+. +-.--.++..|+.+++
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-FSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch-hhhhhhhhhhcCChhhhhhcc
Confidence 445433332210 01225667777777776644332 1223455566666542 2221 1112244567777777
Q ss_pred cCCcCc---ccchhhhccCCcceecccCccccccCC--------CCCcccceeccccccccccchhhccccccccccccc
Q 041505 149 QKNNFE---RIPESVIQLSKLGRLYLRYWERLQSLP--------KLPCKLHELDAHHCTALESLSGLFSSFEARTRYFDL 217 (248)
Q Consensus 149 ~~n~l~---~lp~~l~~~~~L~~L~l~~n~~~~~l~--------~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l 217 (248)
-++... ++.+--.+++.++.+.++.|..++..+ .....|+.+.+.+|+.+++. ....++.+++|+.+
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~--~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA--TLEHLSICRNLERI 431 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH--HHHHHhhCccccee
Confidence 666542 233333467778888777776654431 22355667777777665543 23334455566665
Q ss_pred cccc
Q 041505 218 RYNY 221 (248)
Q Consensus 218 ~l~~ 221 (248)
++-.
T Consensus 432 ~l~~ 435 (483)
T KOG4341|consen 432 ELID 435 (483)
T ss_pred eeec
Confidence 4443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.27 E-value=0.0007 Score=51.17 Aligned_cols=79 Identities=24% Similarity=0.182 Sum_probs=43.7
Q ss_pred ccEEEccCCCCCcccCC-ccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccC
Q 041505 25 IVVLNLRDCKSLKSLPA-GIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNC 103 (248)
Q Consensus 25 L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 103 (248)
=+.+++.+.. +..+.. ..-+.+...+|+++|.+.. ++. +..++.|.+|.+++|.+...-|.--..+++|+.|.+.+
T Consensus 21 e~e~~LR~lk-ip~ienlg~~~d~~d~iDLtdNdl~~-l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLK-IPVIENLGATLDQFDAIDLTDNDLRK-LDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccc-ccchhhccccccccceecccccchhh-ccc-CCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 3556666654 222211 1134566677776666543 222 55677777777777655544444333456677777777
Q ss_pred ccC
Q 041505 104 CSN 106 (248)
Q Consensus 104 ~~~ 106 (248)
|++
T Consensus 98 Nsi 100 (233)
T KOG1644|consen 98 NSI 100 (233)
T ss_pred cch
Confidence 543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.08 E-value=0.0008 Score=50.85 Aligned_cols=79 Identities=28% Similarity=0.284 Sum_probs=40.4
Q ss_pred CccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhh-cccCCCEEeccCCcCcC--cCCccccCCCCCcEEe
Q 041505 24 HIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIE-CLYKLLHLDLEYCESLN--SLPSGLCKLKLLNYLT 100 (248)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~ 100 (248)
....+|+++|. +..++..-.++.|.+|.+ +++.+..+.+.+. -+++|..|.+.+|.+.. ++ +-+..++.|++|.
T Consensus 43 ~~d~iDLtdNd-l~~l~~lp~l~rL~tLll-~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLDNLPHLPRLHTLLL-NNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccc-hhhcccCCCccccceEEe-cCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceee
Confidence 44556666665 443333225666666666 4444444443333 35556666666554321 11 2244566666666
Q ss_pred ccCcc
Q 041505 101 LNCCS 105 (248)
Q Consensus 101 l~~~~ 105 (248)
+-+|.
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 65543
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.05 E-value=2.9e-05 Score=64.44 Aligned_cols=84 Identities=15% Similarity=0.039 Sum_probs=43.7
Q ss_pred CCCCcCeEEccCCcC-cccc--hhhhccCCcceecccCcccccc-----CCCCCcccceeccccccccccchhhccccc-
Q 041505 139 QLSSLGKLDLQKNNF-ERIP--ESVIQLSKLGRLYLRYWERLQS-----LPKLPCKLHELDAHHCTALESLSGLFSSFE- 209 (248)
Q Consensus 139 ~~~~L~~L~l~~n~l-~~lp--~~l~~~~~L~~L~l~~n~~~~~-----l~~~~~~L~~L~l~~~~~l~~~~~~~~~l~- 209 (248)
.+.+|+.++.+++.- +..+ +--.++++|+.+-+..|+..+. +....+.|+.+++..|....+- .+.++.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls~ 369 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLSR 369 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhhcc
Confidence 345566666655432 2211 1123556777777776654322 2233466777777666443332 122222
Q ss_pred ccccccccccccCcc
Q 041505 210 ARTRYFDLRYNYNWI 224 (248)
Q Consensus 210 ~l~~L~~l~l~~n~i 224 (248)
.++.|+.+++++.+.
T Consensus 370 ~C~~lr~lslshce~ 384 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCEL 384 (483)
T ss_pred CCchhccCChhhhhh
Confidence 667777777776643
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.03 E-value=6.2e-05 Score=53.35 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=64.8
Q ss_pred chhhccchHhhhhhhc-CCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcC
Q 041505 5 VDDHALELFSLYAFKQ-NNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 5 ~~~~~~~l~~l~~~l~-~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
..++.+.++++|+.+. .++.++.|++++|. +..+|.++ .++.|+.++++.|.+. ..|..+..+.++-+|+...|.
T Consensus 58 i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na- 134 (177)
T KOG4579|consen 58 ISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA- 134 (177)
T ss_pred EecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc-
Confidence 5667888899996654 46789999999997 88899989 9999999999666654 557777779999999998764
Q ss_pred cCcCCcc
Q 041505 83 LNSLPSG 89 (248)
Q Consensus 83 ~~~~~~~ 89 (248)
..++|-.
T Consensus 135 ~~eid~d 141 (177)
T KOG4579|consen 135 RAEIDVD 141 (177)
T ss_pred cccCcHH
Confidence 3444443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.63 E-value=0.0012 Score=51.77 Aligned_cols=86 Identities=23% Similarity=0.142 Sum_probs=48.0
Q ss_pred CCCccEEEccCCCCCcccCCccccCcccEEEcCCC--CCccccChhhhcccCCCEEeccCCcCcC-cCCccccCCCCCcE
Q 041505 22 NPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNG--TAIEELPSAIECLYKLLHLDLEYCESLN-SLPSGLCKLKLLNY 98 (248)
Q Consensus 22 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~ 98 (248)
+..++.+.+.++.. ..+...-.+++|++|.++.| .....++..+..+|+|++++++.|++.. ..-..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gl-tt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGL-TTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccce-eecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 45555566655442 22211115777888888777 3344455445566888888887765542 11112344566777
Q ss_pred EeccCccCCc
Q 041505 99 LTLNCCSNLQ 108 (248)
Q Consensus 99 L~l~~~~~~~ 108 (248)
|++.+|...+
T Consensus 121 Ldl~n~~~~~ 130 (260)
T KOG2739|consen 121 LDLFNCSVTN 130 (260)
T ss_pred hhcccCCccc
Confidence 7777765543
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.39 E-value=0.0016 Score=30.74 Aligned_cols=21 Identities=43% Similarity=0.574 Sum_probs=15.4
Q ss_pred CcCeEEccCCcCcccchhhhc
Q 041505 142 SLGKLDLQKNNFERIPESVIQ 162 (248)
Q Consensus 142 ~L~~L~l~~n~l~~lp~~l~~ 162 (248)
+|+.|++++|+++.+|..|.+
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477888888888877766543
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.0018 Score=49.01 Aligned_cols=112 Identities=15% Similarity=0.083 Sum_probs=72.1
Q ss_pred ccccccCCCCcCeEEccCCcCc-ccchhhhccCCcceecccCcccc-----ccCCCCCcccceeccccccccccchhhcc
Q 041505 133 LPENIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRLYLRYWERL-----QSLPKLPCKLHELDAHHCTALESLSGLFS 206 (248)
Q Consensus 133 ~~~~l~~~~~L~~L~l~~n~l~-~lp~~l~~~~~L~~L~l~~n~~~-----~~l~~~~~~L~~L~l~~~~~l~~~~~~~~ 206 (248)
.|.....-..++.+|.++..|. +--..+..++.++.|.+.+|.-. +.+....++|+.|++++|+.+++- +..
T Consensus 93 lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~--GL~ 170 (221)
T KOG3864|consen 93 LPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG--GLA 170 (221)
T ss_pred CCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh--HHH
Confidence 4444344456788888887763 22245667778888888887643 334556799999999999987764 344
Q ss_pred cccccccccccccccCcchhchH---HHHHHHHhhhhheeccc
Q 041505 207 SFEARTRYFDLRYNYNWIEMRSE---EFLKMLCKKLNFWQLHY 246 (248)
Q Consensus 207 ~l~~l~~L~~l~l~~n~i~~~~~---~~~~~l~~~l~~~~~~~ 246 (248)
.+.++++|+.|.+..-....... ..++..++++++.-..+
T Consensus 171 ~L~~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~d~ 213 (221)
T KOG3864|consen 171 CLLKLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIVGPDV 213 (221)
T ss_pred HHHHhhhhHHHHhcCchhhhchHHHHHHHHHhCcccceechhh
Confidence 55677788888776543333222 23444467777665544
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.09 E-value=0.00086 Score=58.36 Aligned_cols=35 Identities=29% Similarity=0.226 Sum_probs=15.4
Q ss_pred cCcccEEEcCCCCCccc--cChhhhcccCCCEEeccC
Q 041505 45 LEFLKELDLLNGTAIEE--LPSAIECLYKLLHLDLEY 79 (248)
Q Consensus 45 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~ 79 (248)
++.|+.+.+.++..+.. +......+++|+.|+++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 34444444444444333 223334455555555443
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.73 E-value=0.067 Score=37.52 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=19.1
Q ss_pred hcCCCCccEEEccCCCCCcccCCc-c-ccCcccEEEcCCCCCccccC-hhhhcccCCCEEecc
Q 041505 19 KQNNPHIVVLNLRDCKSLKSLPAG-I-HLEFLKELDLLNGTAIEELP-SAIECLYKLLHLDLE 78 (248)
Q Consensus 19 l~~l~~L~~L~l~~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~ 78 (248)
+..+.+|+.+.+.. . +..++.. + .+..|+.+.+..+ ...++ ..+.++++++.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-C-eeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 34444555555543 2 3333322 2 4445555555332 22222 234445455555554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.00091 Score=53.12 Aligned_cols=96 Identities=26% Similarity=0.224 Sum_probs=56.8
Q ss_pred ccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEc
Q 041505 69 LYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDL 148 (248)
Q Consensus 69 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l 148 (248)
+.+.+.|+.++|.+... ....+|+.|++|.++-| .+. --..+.+|++|++|++
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvN-----------------------kIs--sL~pl~rCtrLkElYL 70 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVN-----------------------KIS--SLAPLQRCTRLKELYL 70 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeecc-----------------------ccc--cchhHHHHHHHHHHHH
Confidence 45566666666543221 22445677777777663 333 2234667777888888
Q ss_pred cCCcCcccc--hhhhccCCcceecccCccccccCCC--------CCcccceec
Q 041505 149 QKNNFERIP--ESVIQLSKLGRLYLRYWERLQSLPK--------LPCKLHELD 191 (248)
Q Consensus 149 ~~n~l~~lp--~~l~~~~~L~~L~l~~n~~~~~l~~--------~~~~L~~L~ 191 (248)
..|.|..+. ..+.++++|+.|.+..|+=.+..+. .+|+|+.||
T Consensus 71 RkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 71 RKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777775553 3566777888888777754433332 246666665
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.64 E-value=0.011 Score=46.42 Aligned_cols=63 Identities=22% Similarity=0.187 Sum_probs=35.3
Q ss_pred cCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccc--hhhhccCCcceecccCccc
Q 041505 114 LGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLYLRYWER 176 (248)
Q Consensus 114 ~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp--~~l~~~~~L~~L~l~~n~~ 176 (248)
+++|+.|.++.+.-.....++.....+++|+.+++++|++..+. ..+..+.+|..|++..|..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 34444555554111344445555555677888888888775321 1344566677777777753
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.59 E-value=0.0023 Score=55.68 Aligned_cols=106 Identities=25% Similarity=0.258 Sum_probs=67.5
Q ss_pred cccchhhccchHh--hhhhhcCCCCccEEEccCC-CCCcccC----Ccc-ccCcccEEEcCCCCCccccC-hhh-hcccC
Q 041505 2 KELVDDHALELFS--LYAFKQNNPHIVVLNLRDC-KSLKSLP----AGI-HLEFLKELDLLNGTAIEELP-SAI-ECLYK 71 (248)
Q Consensus 2 ~~l~~~~~~~l~~--l~~~l~~l~~L~~L~l~~~-~~~~~~~----~~~-~l~~L~~L~l~~~~~~~~~~-~~~-~~l~~ 71 (248)
+++...+|..+.. +.+.....++|+.|+++++ ......+ ... .+++|+.++++.+..+.+.. ..+ ..+++
T Consensus 191 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~ 270 (482)
T KOG1947|consen 191 KRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPN 270 (482)
T ss_pred hHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCC
Confidence 3444455655555 3355667899999999873 2233222 222 67999999998888554332 223 34899
Q ss_pred CCEEeccCCcC-cCcC-CccccCCCCCcEEeccCccCC
Q 041505 72 LLHLDLEYCES-LNSL-PSGLCKLKLLNYLTLNCCSNL 107 (248)
Q Consensus 72 L~~L~l~~~~~-~~~~-~~~l~~l~~L~~L~l~~~~~~ 107 (248)
|+.|.+..|.. ...- .....++++|++|+++.|...
T Consensus 271 L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 271 LETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 99999877653 2221 222345788999999988765
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.57 E-value=0.0086 Score=26.28 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=8.1
Q ss_pred CcCeEEccCCcCcccc
Q 041505 142 SLGKLDLQKNNFERIP 157 (248)
Q Consensus 142 ~L~~L~l~~n~l~~lp 157 (248)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5667777777766554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.10 E-value=0.011 Score=27.78 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=7.3
Q ss_pred CcEEeccCccCCcccccc
Q 041505 96 LNYLTLNCCSNLQRLPDE 113 (248)
Q Consensus 96 L~~L~l~~~~~~~~~~~~ 113 (248)
|++|++++|++. .+|..
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 444455444333 34433
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=0.0025 Score=50.72 Aligned_cols=98 Identities=17% Similarity=0.090 Sum_probs=65.3
Q ss_pred CCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCccccccCC-----CCCccccee
Q 041505 116 NLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLP-----KLPCKLHEL 190 (248)
Q Consensus 116 ~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~-----~~~~~L~~L 190 (248)
+.+.|+.++|+ ..+ ......|+.|+.|.++-|+|+.+ +.+..|.+|++|.+..|.+ ..+. ..+++|+.|
T Consensus 20 ~vkKLNcwg~~--L~D--Isic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCG--LDD--ISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCC--ccH--HHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhhH
Confidence 44566666654 221 13356789999999999999888 4578999999999999854 2222 124777888
Q ss_pred ccccccccccchhhccccc--cccccccccc
Q 041505 191 DAHHCTALESLSGLFSSFE--ARTRYFDLRY 219 (248)
Q Consensus 191 ~l~~~~~l~~~~~~~~~l~--~l~~L~~l~l 219 (248)
.+..++.-...+....... .+|+|+.||-
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccC
Confidence 7777666554444332222 6778887773
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.80 E-value=0.14 Score=35.87 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=52.7
Q ss_pred ccCcccEEEcCCCCCccccC-hhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCccccc-c---cCCCC
Q 041505 44 HLEFLKELDLLNGTAIEELP-SAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPD-E---LGNLE 118 (248)
Q Consensus 44 ~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~---~~~l~ 118 (248)
.+.+|+.+.+.. . +..++ ..|.++++|+.+.+.. .....-...+..+++++.+.+.. ... .++. . ..+++
T Consensus 10 ~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPN-NLTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESS-TTSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC-C-eeEeChhhcccccccccccccc-cccccceeeeecccccccccccc-ccc-cccccccccccccc
Confidence 677899999853 3 34444 5688898999999986 33333333466677899999965 322 2222 3 34556
Q ss_pred ceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-hhhccCCcc
Q 041505 119 ALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLG 167 (248)
Q Consensus 119 ~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~~~~L~ 167 (248)
.+.+.. + ....-...+.++ +++.+.+.. .+..++. .|.++++|+
T Consensus 85 ~i~~~~--~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPS--N-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETT--T--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccCc--c-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 666654 3 221123457777 899888875 4555543 566666654
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.05 E-value=0.0014 Score=50.79 Aligned_cols=99 Identities=18% Similarity=0.078 Sum_probs=77.0
Q ss_pred hhhccchHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCc
Q 041505 6 DDHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 6 ~~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
+++...+..+| ..++.+...+.||++.|+ ...+...+ -+..+..|+++ -+.+..+|..++....++.++... +..
T Consensus 24 ~~s~s~~s~~~v~ei~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~s-knq~~~~~~d~~q~~e~~~~~~~~-n~~ 100 (326)
T KOG0473|consen 24 DLSLSELSEIPVREIASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLS-KNQIKFLPKDAKQQRETVNAASHK-NNH 100 (326)
T ss_pred CCCHHHhcccchhhhhccceeeeehhhhhH-HHhhccchHHHHHHHHHhcc-HhhHhhChhhHHHHHHHHHHHhhc-cch
Confidence 34445556677 568889999999999988 55555556 67788889995 444677898899999999998876 457
Q ss_pred CcCCccccCCCCCcEEeccCccCC
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNL 107 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~ 107 (248)
...|.+.+..+.+++++.-.+.+.
T Consensus 101 ~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 101 SQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hhCCccccccCCcchhhhccCcch
Confidence 788999999999999998776543
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.28 E-value=0.088 Score=25.68 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=16.3
Q ss_pred CCCcCeEEccCCcCcccchh
Q 041505 140 LSSLGKLDLQKNNFERIPES 159 (248)
Q Consensus 140 ~~~L~~L~l~~n~l~~lp~~ 159 (248)
+++|+.|++++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46788999999999888864
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.28 E-value=0.088 Score=25.68 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=16.3
Q ss_pred CCCcCeEEccCCcCcccchh
Q 041505 140 LSSLGKLDLQKNNFERIPES 159 (248)
Q Consensus 140 ~~~L~~L~l~~n~l~~lp~~ 159 (248)
+++|+.|++++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46788999999999888864
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.83 E-value=0.0057 Score=47.51 Aligned_cols=77 Identities=14% Similarity=0.031 Sum_probs=64.5
Q ss_pred cchhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcC
Q 041505 4 LVDDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 4 l~~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
.++++.+++..+...+.-++.+..|+++.|. +...|+.+ ....++.++. +++.....|.+++..+++++++.-.+.+
T Consensus 46 vld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~-~~n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 46 VLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAAS-HKNNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred eehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHh-hccchhhCCccccccCCcchhhhccCcc
Confidence 4567777788888777778899999999987 88899989 8899999999 6666677899999999999999877653
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.72 E-value=0.014 Score=50.89 Aligned_cols=184 Identities=24% Similarity=0.152 Sum_probs=83.5
Q ss_pred ccEEEcCCCCCcc----ccChhhhcccCCCEEeccCCcCcCcCC----ccccCC-CCCcEEeccCccCCcc----ccccc
Q 041505 48 LKELDLLNGTAIE----ELPSAIECLYKLLHLDLEYCESLNSLP----SGLCKL-KLLNYLTLNCCSNLQR----LPDEL 114 (248)
Q Consensus 48 L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l-~~L~~L~l~~~~~~~~----~~~~~ 114 (248)
+..+.+..|..-. .+...+...+.|..|++++|.+...-. ..+... ..+++|.+..|..... +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4555554444332 233345556666667776665543211 111111 3455566655554322 11222
Q ss_pred C---CCCceEecccCCcccc--ccccccc----CCCCcCeEEccCCcCccc-----chhhhccCC-cceecccCcccccc
Q 041505 115 G---NLEALWISREAGVISR--WLPENIG----QLSSLGKLDLQKNNFERI-----PESVIQLSK-LGRLYLRYWERLQS 179 (248)
Q Consensus 115 ~---~l~~L~l~~~~n~~~~--~~~~~l~----~~~~L~~L~l~~n~l~~l-----p~~l~~~~~-L~~L~l~~n~~~~~ 179 (248)
. .++.+++..+.-...+ .++..+. ...+++.+++++|.++.. ...+...++ +..+++..|.+...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 2 2223334332100000 1222233 355677777777766411 122334444 55577777654322
Q ss_pred --------CCCCCcccceeccccccccccchhh-cccccccccccccccccCcchhchHHH
Q 041505 180 --------LPKLPCKLHELDAHHCTALESLSGL-FSSFEARTRYFDLRYNYNWIEMRSEEF 231 (248)
Q Consensus 180 --------l~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~l~~L~~l~l~~n~i~~~~~~~ 231 (248)
++..-+.++++++..|+....-... ...+..++.++.+.++.|.+.......
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~ 309 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVEL 309 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHH
Confidence 1111144566666665433222221 233335567777777777776665443
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.64 E-value=0.26 Score=23.44 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=14.9
Q ss_pred ccccccccccCcchhchHHHH
Q 041505 212 TRYFDLRYNYNWIEMRSEEFL 232 (248)
Q Consensus 212 ~~L~~l~l~~n~i~~~~~~~~ 232 (248)
++|++|++++|.|+..+.+.+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 578889999999888776554
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.41 E-value=0.095 Score=39.91 Aligned_cols=80 Identities=24% Similarity=0.218 Sum_probs=50.5
Q ss_pred CccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccC-hhhh-cccCCCEEeccCCcCcCcC-CccccCCCCCcEE
Q 041505 24 HIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELP-SAIE-CLYKLLHLDLEYCESLNSL-PSGLCKLKLLNYL 99 (248)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-~~~~-~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L 99 (248)
.++.+|.+++.+-.+--+-+ .++.++.|.+.+|....... ..++ -.++|+.|+++.|..+++. ...+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46677777766433322333 66777777776666554322 1122 4678888888888776654 3446778888888
Q ss_pred eccC
Q 041505 100 TLNC 103 (248)
Q Consensus 100 ~l~~ 103 (248)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 8765
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.79 E-value=0.62 Score=22.83 Aligned_cols=18 Identities=33% Similarity=0.665 Sum_probs=13.6
Q ss_pred CCcCeEEccCCcCcccch
Q 041505 141 SSLGKLDLQKNNFERIPE 158 (248)
Q Consensus 141 ~~L~~L~l~~n~l~~lp~ 158 (248)
.+|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357788888888887775
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.41 E-value=0.03 Score=48.90 Aligned_cols=163 Identities=23% Similarity=0.239 Sum_probs=97.0
Q ss_pred hHhhhhhhcCCCCccEEEccCCCCCcc----cCCcc-cc-CcccEEEcCCCCCccc----cChhhhcccCCCEEeccCCc
Q 041505 12 LFSLYAFKQNNPHIVVLNLRDCKSLKS----LPAGI-HL-EFLKELDLLNGTAIEE----LPSAIECLYKLLHLDLEYCE 81 (248)
Q Consensus 12 l~~l~~~l~~l~~L~~L~l~~~~~~~~----~~~~~-~l-~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~ 81 (248)
...+...+....+|..|++++|.+... +...+ .. +.+++|++..|..... ++..+.....++.++++.|.
T Consensus 104 ~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 104 AEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc
Confidence 344556677778888899999874431 12222 21 4567777766665442 34556567788888888776
Q ss_pred CcC----cCCcccc----CCCCCcEEeccCccCCcccc----ccc---CC-CCceEecccCCccccc----ccccccCC-
Q 041505 82 SLN----SLPSGLC----KLKLLNYLTLNCCSNLQRLP----DEL---GN-LEALWISREAGVISRW----LPENIGQL- 140 (248)
Q Consensus 82 ~~~----~~~~~l~----~l~~L~~L~l~~~~~~~~~~----~~~---~~-l~~L~l~~~~n~~~~~----~~~~l~~~- 140 (248)
+.. ..+..+. ...++++|++.+|....... ..+ +. +.++++.. |...+. +...+..+
T Consensus 184 l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~--n~l~d~g~~~L~~~l~~~~ 261 (478)
T KOG4308|consen 184 LIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS--NKLGDVGVEKLLPCLSVLS 261 (478)
T ss_pred cchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh--cCcchHHHHHHHHHhcccc
Confidence 542 1122233 46678888888876553211 111 12 33555555 333322 23334555
Q ss_pred CCcCeEEccCCcCc-----ccchhhhccCCcceecccCccc
Q 041505 141 SSLGKLDLQKNNFE-----RIPESVIQLSKLGRLYLRYWER 176 (248)
Q Consensus 141 ~~L~~L~l~~n~l~-----~lp~~l~~~~~L~~L~l~~n~~ 176 (248)
..++.+++..|.++ .+...+..++.++.+.+..|++
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 67788888888874 3445566777888888888764
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.63 E-value=1.2 Score=21.89 Aligned_cols=16 Identities=38% Similarity=0.723 Sum_probs=11.5
Q ss_pred CCcCeEEccCCcCccc
Q 041505 141 SSLGKLDLQKNNFERI 156 (248)
Q Consensus 141 ~~L~~L~l~~n~l~~l 156 (248)
++|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5677888888877554
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.00 E-value=2.2 Score=21.16 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=16.8
Q ss_pred ccccccccccCcchhchHHHH
Q 041505 212 TRYFDLRYNYNWIEMRSEEFL 232 (248)
Q Consensus 212 ~~L~~l~l~~n~i~~~~~~~~ 232 (248)
++|++|+++.|.|...+...+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 478999999999988876443
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.31 E-value=2.5 Score=20.41 Aligned_cols=14 Identities=50% Similarity=0.522 Sum_probs=7.2
Q ss_pred CcccEEEcCCCCCc
Q 041505 46 EFLKELDLLNGTAI 59 (248)
Q Consensus 46 ~~L~~L~l~~~~~~ 59 (248)
++|++|++++|..+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 44555555555443
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.69 E-value=3.7 Score=36.25 Aligned_cols=81 Identities=19% Similarity=0.101 Sum_probs=42.1
Q ss_pred cCCCCcCeEEccCCcCccc---chhhhccCCcceecccCccccc----cCCCC-Ccccceeccccccccccchhhccccc
Q 041505 138 GQLSSLGKLDLQKNNFERI---PESVIQLSKLGRLYLRYWERLQ----SLPKL-PCKLHELDAHHCTALESLSGLFSSFE 209 (248)
Q Consensus 138 ~~~~~L~~L~l~~n~l~~l---p~~l~~~~~L~~L~l~~n~~~~----~l~~~-~~~L~~L~l~~~~~l~~~~~~~~~l~ 209 (248)
.+.+.+..+.+++|++..+ ...-...++|+.|+|+.|.... +++.. ...|++|.+.+++..+.....-....
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 3445677777888876433 2233456788888888772211 11211 13466666666654443322221111
Q ss_pred ----ccccccccc
Q 041505 210 ----ARTRYFDLR 218 (248)
Q Consensus 210 ----~l~~L~~l~ 218 (248)
.+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 455665555
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.16 E-value=20 Score=31.88 Aligned_cols=53 Identities=25% Similarity=0.156 Sum_probs=28.6
Q ss_pred cCCCCcCeEEccCC--cCcccchhhh--ccCCcceecccCccccccCC----------CCCcccceec
Q 041505 138 GQLSSLGKLDLQKN--NFERIPESVI--QLSKLGRLYLRYWERLQSLP----------KLPCKLHELD 191 (248)
Q Consensus 138 ~~~~~L~~L~l~~n--~l~~lp~~l~--~~~~L~~L~l~~n~~~~~l~----------~~~~~L~~L~ 191 (248)
...++|..|++++| .+...+ ++. +...|++|.+.+|++.+... +.+|+|..||
T Consensus 241 q~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 241 QIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred Hhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 44467777777777 332111 222 33456667777776654332 2356666665
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=35.05 E-value=1.5e+02 Score=26.33 Aligned_cols=87 Identities=15% Similarity=-0.012 Sum_probs=42.7
Q ss_pred CcCeEEccCCcCc-ccch--hhhccCCcceecccCcccccc------CC------CCCcccceeccccccccccchhhcc
Q 041505 142 SLGKLDLQKNNFE-RIPE--SVIQLSKLGRLYLRYWERLQS------LP------KLPCKLHELDAHHCTALESLSGLFS 206 (248)
Q Consensus 142 ~L~~L~l~~n~l~-~lp~--~l~~~~~L~~L~l~~n~~~~~------l~------~~~~~L~~L~l~~~~~l~~~~~~~~ 206 (248)
.++++...+|... +.-. .+...++.+.+++.+...... .+ ....-+..+.++.|.--..+....+
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 3778887777652 2211 223345555555543321000 00 0112345555555544444444445
Q ss_pred cccccccccccccccCcchhch
Q 041505 207 SFEARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 207 ~l~~l~~L~~l~l~~n~i~~~~ 228 (248)
.+..-+.+..+++++|.....+
T Consensus 435 ~l~stqtl~kldisgn~mgd~g 456 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGG 456 (553)
T ss_pred hhccCcccccccccCCCcccCC
Confidence 5556667777777777655443
No 90
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=22.04 E-value=50 Score=16.17 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=9.8
Q ss_pred hhhcccCCCEEecc
Q 041505 65 AIECLYKLLHLDLE 78 (248)
Q Consensus 65 ~~~~l~~L~~L~l~ 78 (248)
.+..+|+|+.||..
T Consensus 8 Vi~~LPqL~~LD~~ 21 (26)
T smart00446 8 VIRLLPQLRKLDXX 21 (26)
T ss_pred HHHHCCccceeccc
Confidence 35667888888754
Done!