Query 041505
Match_columns 248
No_of_seqs 144 out of 2074
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 13:07:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 3.4E-25 1.2E-29 182.3 14.4 199 22-229 80-294 (328)
2 1ogq_A PGIP-2, polygalacturona 99.9 5.4E-26 1.8E-30 186.0 9.5 214 8-227 58-283 (313)
3 4fcg_A Uncharacterized protein 99.9 3.2E-25 1.1E-29 182.5 13.9 214 5-227 86-316 (328)
4 1ogq_A PGIP-2, polygalacturona 99.9 2.2E-25 7.6E-30 182.3 11.7 209 9-223 86-302 (313)
5 3rgz_A Protein brassinosteroid 99.9 1.2E-24 4E-29 197.8 13.4 205 16-225 435-717 (768)
6 3rgz_A Protein brassinosteroid 99.9 1.5E-23 5.1E-28 190.5 17.5 233 9-247 403-714 (768)
7 4eco_A Uncharacterized protein 99.9 2E-24 6.9E-29 192.4 9.9 217 9-230 192-451 (636)
8 4eco_A Uncharacterized protein 99.9 5.1E-24 1.8E-28 189.8 9.1 176 15-195 239-443 (636)
9 3v47_A TOLL-like receptor 5B a 99.9 4.1E-23 1.4E-27 176.8 13.5 62 134-195 292-357 (455)
10 1ozn_A Reticulon 4 receptor; N 99.9 5.1E-22 1.7E-26 160.1 17.2 215 6-227 17-240 (285)
11 4ecn_A Leucine-rich repeat pro 99.9 4.8E-23 1.6E-27 188.0 12.2 216 10-231 435-692 (876)
12 3v47_A TOLL-like receptor 5B a 99.9 1.1E-22 3.7E-27 174.2 13.0 120 5-124 35-163 (455)
13 2id5_A Lingo-1, leucine rich r 99.9 6.5E-22 2.2E-26 170.5 15.7 217 9-229 20-265 (477)
14 3t6q_A CD180 antigen; protein- 99.9 4.6E-22 1.6E-26 176.2 14.9 185 8-195 262-459 (606)
15 4ecn_A Leucine-rich repeat pro 99.9 1.5E-22 5E-27 184.8 10.3 175 15-195 481-683 (876)
16 1wwl_A Monocyte differentiatio 99.9 3.3E-22 1.1E-26 163.4 11.2 198 21-227 93-311 (312)
17 3zyj_A Leucine-rich repeat-con 99.9 9.1E-22 3.1E-26 168.1 13.8 202 19-227 84-294 (440)
18 3t6q_A CD180 antigen; protein- 99.9 5.4E-21 1.9E-25 169.3 19.1 232 7-245 285-555 (606)
19 3o6n_A APL1; leucine-rich repe 99.9 2.7E-21 9.4E-26 162.5 16.4 181 9-195 78-305 (390)
20 3zyi_A Leucine-rich repeat-con 99.9 7.3E-22 2.5E-26 169.2 12.8 214 7-227 82-305 (452)
21 3zyi_A Leucine-rich repeat-con 99.9 2.9E-21 9.9E-26 165.5 16.4 229 9-246 63-299 (452)
22 2id5_A Lingo-1, leucine rich r 99.9 8.3E-22 2.8E-26 169.8 13.0 219 6-228 62-312 (477)
23 3oja_B Anopheles plasmodium-re 99.9 2.6E-21 8.9E-26 171.2 16.3 184 8-195 83-311 (597)
24 3zyj_A Leucine-rich repeat-con 99.9 2.8E-21 9.6E-26 165.0 15.4 229 9-246 52-288 (440)
25 2z66_A Variable lymphocyte rec 99.9 2E-21 6.8E-26 158.2 13.5 215 7-227 35-263 (306)
26 2z66_A Variable lymphocyte rec 99.9 4E-22 1.4E-26 162.3 9.2 213 8-229 15-240 (306)
27 1xku_A Decorin; proteoglycan, 99.9 5.9E-21 2E-25 157.0 16.3 216 5-226 57-307 (330)
28 3o6n_A APL1; leucine-rich repe 99.9 1.4E-20 4.7E-25 158.3 17.3 232 6-247 51-328 (390)
29 2z80_A TOLL-like receptor 2, v 99.9 6E-21 2.1E-25 158.4 14.6 216 6-228 58-317 (353)
30 2z7x_B TOLL-like receptor 1, v 99.9 3.1E-21 1.1E-25 167.9 13.1 117 5-124 26-147 (520)
31 3oja_B Anopheles plasmodium-re 99.9 1.2E-20 4.2E-25 166.9 17.0 233 6-247 57-334 (597)
32 2z81_A CD282 antigen, TOLL-lik 99.9 2.3E-21 8E-26 169.7 11.6 169 6-176 32-208 (549)
33 2z62_A TOLL-like receptor 4, v 99.9 2E-20 6.9E-25 150.0 16.0 211 11-228 18-240 (276)
34 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-20 3.8E-25 155.5 14.6 214 5-225 59-307 (332)
35 2z7x_B TOLL-like receptor 1, v 99.8 8.9E-21 3E-25 165.0 14.4 76 5-82 50-127 (520)
36 1ozn_A Reticulon 4 receptor; N 99.8 1.5E-20 5.2E-25 151.5 14.3 191 5-197 37-237 (285)
37 2z80_A TOLL-like receptor 2, v 99.8 4.3E-21 1.5E-25 159.3 11.2 234 6-247 37-311 (353)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.3E-21 1.1E-25 169.4 10.7 117 5-124 57-178 (562)
39 3j0a_A TOLL-like receptor 5; m 99.8 9.4E-21 3.2E-25 173.8 13.6 168 6-178 10-188 (844)
40 2ft3_A Biglycan; proteoglycan, 99.8 2.9E-20 9.8E-25 153.1 14.9 222 11-247 44-274 (332)
41 3vq2_A TLR4, TOLL-like recepto 99.8 7.7E-21 2.6E-25 168.3 11.5 130 44-176 348-485 (606)
42 3o53_A Protein LRIM1, AGAP0063 99.8 3.7E-21 1.3E-25 157.5 8.5 207 6-225 16-250 (317)
43 4glp_A Monocyte differentiatio 99.8 1.3E-20 4.3E-25 153.8 11.5 197 22-227 90-309 (310)
44 1ziw_A TOLL-like receptor 3; i 99.8 2.7E-20 9.2E-25 167.0 14.4 167 6-176 10-183 (680)
45 1xku_A Decorin; proteoglycan, 99.8 8.2E-20 2.8E-24 150.2 16.2 222 11-246 42-272 (330)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.6E-20 8.8E-25 163.7 13.8 77 5-83 81-159 (562)
47 4fmz_A Internalin; leucine ric 99.8 1.6E-19 5.6E-24 149.2 17.4 223 7-245 73-319 (347)
48 2o6q_A Variable lymphocyte rec 99.8 1.9E-19 6.6E-24 144.0 16.8 195 25-226 18-219 (270)
49 2ast_B S-phase kinase-associat 99.8 3.9E-21 1.3E-25 158.3 7.1 212 17-232 62-291 (336)
50 3j0a_A TOLL-like receptor 5; m 99.8 3.7E-20 1.3E-24 169.9 13.8 119 6-124 30-157 (844)
51 3oja_A Leucine-rich immune mol 99.8 4.1E-20 1.4E-24 159.7 12.7 174 13-195 20-201 (487)
52 3vq2_A TLR4, TOLL-like recepto 99.8 6.7E-20 2.3E-24 162.3 14.2 186 6-195 17-214 (606)
53 2z81_A CD282 antigen, TOLL-lik 99.8 1.7E-20 5.9E-25 164.1 9.8 220 6-231 11-242 (549)
54 2xwt_C Thyrotropin receptor; s 99.8 5.4E-20 1.8E-24 144.5 11.2 203 7-222 18-236 (239)
55 2z62_A TOLL-like receptor 4, v 99.8 1.5E-19 5E-24 145.0 13.5 190 5-196 33-235 (276)
56 4g8a_A TOLL-like receptor 4; l 99.8 9.9E-20 3.4E-24 161.5 13.0 101 5-106 57-160 (635)
57 3bz5_A Internalin-J, INLJ; leu 99.8 6.2E-19 2.1E-23 151.2 17.1 201 6-228 48-249 (457)
58 2z63_A TOLL-like receptor 4, v 99.8 6.2E-20 2.1E-24 161.2 11.2 102 6-107 34-137 (570)
59 3m19_A Variable lymphocyte rec 99.8 4.2E-19 1.4E-23 140.5 14.7 165 8-176 22-191 (251)
60 1ziw_A TOLL-like receptor 3; i 99.8 1.2E-18 4E-23 156.3 19.5 179 62-246 397-618 (680)
61 2o6q_A Variable lymphocyte rec 99.8 1.7E-18 5.9E-23 138.4 18.4 187 5-196 21-216 (270)
62 3rfs_A Internalin B, repeat mo 99.8 4E-19 1.4E-23 142.3 13.8 173 19-196 37-216 (272)
63 3bz5_A Internalin-J, INLJ; leu 99.8 3.8E-19 1.3E-23 152.5 14.4 92 6-107 91-183 (457)
64 4fmz_A Internalin; leucine ric 99.8 1.2E-18 4.3E-23 143.9 16.9 223 8-247 96-343 (347)
65 1p9a_G Platelet glycoprotein I 99.8 2E-18 7E-23 139.4 17.4 195 19-225 6-208 (290)
66 3rfs_A Internalin B, repeat mo 99.8 1.6E-18 5.5E-23 138.8 15.5 178 9-195 50-232 (272)
67 2ca6_A RAN GTPase-activating p 99.8 2.2E-20 7.5E-25 156.8 3.8 96 11-106 20-134 (386)
68 1wwl_A Monocyte differentiatio 99.8 1.6E-19 5.4E-24 147.5 8.3 184 6-195 101-306 (312)
69 2xwt_C Thyrotropin receptor; s 99.8 8.2E-19 2.8E-23 137.7 11.9 187 5-197 36-238 (239)
70 3goz_A Leucine-rich repeat-con 99.8 1.2E-19 4.2E-24 151.1 7.3 209 18-228 45-300 (362)
71 2z63_A TOLL-like receptor 4, v 99.8 7.3E-19 2.5E-23 154.4 12.7 200 22-228 324-534 (570)
72 4glp_A Monocyte differentiatio 99.8 2E-19 6.8E-24 146.7 8.3 185 8-196 99-305 (310)
73 1h6u_A Internalin H; cell adhe 99.8 2.7E-18 9.4E-23 139.9 14.7 191 20-228 38-233 (308)
74 1jl5_A Outer protein YOPM; leu 99.8 2.4E-18 8.3E-23 147.3 14.8 156 23-195 131-287 (454)
75 3o53_A Protein LRIM1, AGAP0063 99.8 9.6E-19 3.3E-23 143.1 11.6 207 5-222 39-272 (317)
76 3oja_A Leucine-rich immune mol 99.8 6.2E-19 2.1E-23 152.3 10.7 204 5-225 39-250 (487)
77 3m19_A Variable lymphocyte rec 99.8 1.5E-17 5.1E-22 131.5 17.0 169 23-195 14-189 (251)
78 1o6v_A Internalin A; bacterial 99.8 7.3E-18 2.5E-22 144.9 16.4 194 19-228 173-369 (466)
79 3goz_A Leucine-rich repeat-con 99.8 1.3E-19 4.3E-24 151.0 5.1 238 6-247 4-294 (362)
80 2ca6_A RAN GTPase-activating p 99.8 2.1E-19 7.2E-24 150.9 6.1 224 15-242 52-335 (386)
81 1p9a_G Platelet glycoprotein I 99.8 6.5E-18 2.2E-22 136.5 14.6 183 6-196 16-206 (290)
82 2ast_B S-phase kinase-associat 99.8 1.3E-19 4.4E-24 149.2 3.5 215 8-228 78-309 (336)
83 1o6v_A Internalin A; bacterial 99.8 1.1E-17 3.8E-22 143.7 15.3 91 10-107 56-147 (466)
84 3g06_A SSPH2 (leucine-rich rep 99.8 1.9E-17 6.6E-22 146.4 17.0 204 7-235 68-307 (622)
85 3cvr_A Invasion plasmid antige 99.8 3.3E-17 1.1E-21 143.4 17.9 188 23-235 59-253 (571)
86 1jl5_A Outer protein YOPM; leu 99.8 1.6E-17 5.5E-22 142.2 15.0 166 47-226 216-410 (454)
87 3g06_A SSPH2 (leucine-rich rep 99.8 9.9E-18 3.4E-22 148.3 13.8 216 5-247 45-294 (622)
88 4ay9_X Follicle-stimulating ho 99.7 5.2E-18 1.8E-22 140.6 11.1 202 10-222 19-256 (350)
89 1h6u_A Internalin H; cell adhe 99.7 3.5E-17 1.2E-21 133.3 15.0 178 7-196 48-228 (308)
90 2o6s_A Variable lymphocyte rec 99.7 2.6E-17 8.9E-22 126.4 12.4 165 10-184 17-185 (208)
91 4ezg_A Putative uncharacterize 99.7 1.8E-17 6.1E-22 126.4 11.1 148 20-175 41-192 (197)
92 1z7x_W Ribonuclease inhibitor; 99.7 1.7E-18 5.7E-23 148.4 5.3 214 16-232 49-304 (461)
93 2v9t_B SLIT homolog 2 protein 99.7 5.8E-17 2E-21 125.7 12.5 146 27-176 15-164 (220)
94 2v70_A SLIT-2, SLIT homolog 2 99.7 9.5E-17 3.2E-21 124.5 12.4 148 26-177 14-166 (220)
95 1z7x_W Ribonuclease inhibitor; 99.7 7.9E-18 2.7E-22 144.2 6.5 212 16-229 106-358 (461)
96 1h6t_A Internalin B; cell adhe 99.7 1.9E-16 6.5E-21 127.9 13.9 163 20-195 43-210 (291)
97 4g8a_A TOLL-like receptor 4; l 99.7 1.2E-16 4.2E-21 141.6 13.9 162 11-177 42-214 (635)
98 3e6j_A Variable lymphocyte rec 99.7 1.5E-16 5.2E-21 124.1 12.5 146 26-176 22-171 (229)
99 1h6t_A Internalin B; cell adhe 99.7 2.9E-16 9.9E-21 126.9 14.0 161 6-178 52-214 (291)
100 2o6s_A Variable lymphocyte rec 99.7 4.8E-16 1.6E-20 119.3 14.0 169 26-202 10-182 (208)
101 3cvr_A Invasion plasmid antige 99.7 4.3E-16 1.5E-20 136.4 12.7 179 5-207 64-252 (571)
102 4ay9_X Follicle-stimulating ho 99.7 3.8E-16 1.3E-20 129.4 11.8 195 26-228 12-218 (350)
103 1m9s_A Internalin B; cell inva 99.7 1.4E-15 4.8E-20 134.3 15.9 155 10-176 53-209 (605)
104 2xot_A Amphoterin-induced prot 99.7 5.6E-16 1.9E-20 128.9 12.4 166 6-176 24-201 (361)
105 3e6j_A Variable lymphocyte rec 99.7 2.5E-15 8.6E-20 117.1 15.3 147 45-196 18-170 (229)
106 1m9s_A Internalin B; cell inva 99.7 1.1E-15 3.7E-20 135.0 14.6 165 19-196 39-208 (605)
107 1xeu_A Internalin C; cellular 99.7 1.4E-15 4.9E-20 121.0 13.2 157 7-177 26-185 (263)
108 4ezg_A Putative uncharacterize 99.7 3.9E-16 1.3E-20 118.9 9.5 142 6-154 50-194 (197)
109 1xeu_A Internalin C; cellular 99.6 5.9E-16 2E-20 123.2 10.2 163 22-196 18-183 (263)
110 2ell_A Acidic leucine-rich nuc 99.6 1.6E-15 5.4E-20 112.5 10.4 133 20-176 21-159 (168)
111 2v9t_B SLIT homolog 2 protein 99.6 7.7E-15 2.6E-19 113.7 14.3 144 48-196 13-163 (220)
112 2je0_A Acidic leucine-rich nuc 99.6 1.3E-15 4.5E-20 110.7 9.3 128 21-172 15-148 (149)
113 2v70_A SLIT-2, SLIT homolog 2 99.6 1E-14 3.4E-19 113.0 14.4 144 48-196 13-164 (220)
114 2xot_A Amphoterin-induced prot 99.6 3.3E-15 1.1E-19 124.2 12.2 148 26-177 21-176 (361)
115 1dce_A Protein (RAB geranylger 99.6 4.1E-17 1.4E-21 143.2 0.0 164 6-177 355-546 (567)
116 1w8a_A SLIT protein; signaling 99.6 1.1E-14 3.7E-19 110.4 10.0 125 26-154 11-139 (192)
117 4b8c_D Glucose-repressible alc 99.6 3E-15 1E-19 135.0 7.8 149 38-195 215-369 (727)
118 1w8a_A SLIT protein; signaling 99.6 3.5E-14 1.2E-18 107.6 12.1 125 48-177 10-139 (192)
119 2wfh_A SLIT homolog 2 protein 99.5 9.8E-14 3.3E-18 105.2 13.4 125 26-176 13-138 (193)
120 3ogk_B Coronatine-insensitive 99.5 1.8E-15 6E-20 133.5 4.1 172 19-194 160-351 (592)
121 2je0_A Acidic leucine-rich nuc 99.5 2.6E-14 8.9E-19 103.7 9.4 123 45-193 16-148 (149)
122 2ell_A Acidic leucine-rich nuc 99.5 4.7E-14 1.6E-18 104.5 10.7 126 45-195 23-157 (168)
123 1a9n_A U2A', U2A'; complex (nu 99.5 3.3E-14 1.1E-18 106.2 9.7 130 19-176 15-152 (176)
124 4b8c_D Glucose-repressible alc 99.5 4.2E-15 1.5E-19 134.1 5.0 156 23-184 173-336 (727)
125 3ogk_B Coronatine-insensitive 99.5 9.5E-15 3.3E-19 128.8 4.3 172 20-193 109-326 (592)
126 2wfh_A SLIT homolog 2 protein 99.5 1.4E-13 4.7E-18 104.4 10.1 124 5-154 15-139 (193)
127 1dce_A Protein (RAB geranylger 99.5 2.9E-13 9.9E-18 118.8 12.5 118 48-171 443-567 (567)
128 2o6r_A Variable lymphocyte rec 99.5 7.6E-13 2.6E-17 98.8 13.1 126 25-175 9-135 (177)
129 2p1m_B Transport inhibitor res 99.5 1.7E-14 5.7E-19 127.2 2.9 128 20-149 102-243 (594)
130 2o6r_A Variable lymphocyte rec 99.4 7.5E-13 2.6E-17 98.8 11.2 125 7-156 14-139 (177)
131 1ds9_A Outer arm dynein; leuci 99.4 4.6E-15 1.6E-19 113.0 -2.2 136 13-154 8-153 (198)
132 2p1m_B Transport inhibitor res 99.4 1.7E-14 6E-19 127.1 1.1 220 20-242 286-536 (594)
133 1a9n_A U2A', U2A'; complex (nu 99.4 4.1E-12 1.4E-16 94.7 10.2 106 44-177 17-126 (176)
134 2r9u_A Variable lymphocyte rec 99.3 2.1E-11 7.1E-16 90.8 11.8 108 26-158 15-122 (174)
135 3g39_A Variable lymphocyte rec 99.3 2.5E-11 8.4E-16 90.0 11.8 107 25-156 11-117 (170)
136 3g39_A Variable lymphocyte rec 99.3 1.1E-11 3.9E-16 91.9 8.7 102 5-108 14-116 (170)
137 2r9u_A Variable lymphocyte rec 99.3 1.7E-11 5.7E-16 91.3 8.5 101 4-107 16-118 (174)
138 1ds9_A Outer arm dynein; leuci 99.3 1.2E-13 4.1E-18 105.1 -3.4 130 11-147 36-180 (198)
139 3sb4_A Hypothetical leucine ri 99.2 2.5E-11 8.6E-16 99.5 7.4 88 139-232 224-317 (329)
140 3un9_A NLR family member X1; l 99.2 1.5E-12 5.3E-17 108.5 0.1 153 22-176 71-251 (372)
141 3un9_A NLR family member X1; l 99.1 9.6E-12 3.3E-16 103.6 1.1 132 23-156 101-254 (372)
142 2ifg_A High affinity nerve gro 99.1 4.9E-10 1.7E-14 92.3 9.1 98 7-107 15-116 (347)
143 2ifg_A High affinity nerve gro 99.0 7E-10 2.4E-14 91.4 9.0 107 26-157 11-119 (347)
144 3sb4_A Hypothetical leucine ri 99.0 1.1E-09 3.9E-14 89.6 9.0 148 22-176 100-309 (329)
145 4fdw_A Leucine rich hypothetic 98.8 6.3E-08 2.1E-12 81.4 13.9 150 12-172 146-308 (401)
146 2ra8_A Uncharacterized protein 98.8 2E-09 6.8E-14 89.2 4.5 131 62-195 164-317 (362)
147 4fdw_A Leucine rich hypothetic 98.7 2.5E-07 8.5E-12 77.7 12.9 59 18-79 175-235 (401)
148 2ra8_A Uncharacterized protein 98.6 7.7E-08 2.6E-12 79.6 8.3 167 65-234 134-329 (362)
149 1io0_A Tropomodulin; LRR prote 98.5 4.7E-08 1.6E-12 73.2 3.1 64 18-81 31-104 (185)
150 1io0_A Tropomodulin; LRR prote 98.4 1E-07 3.5E-12 71.3 3.6 114 44-176 34-163 (185)
151 3e4g_A ATP synthase subunit S, 98.3 3.8E-07 1.3E-11 67.3 3.0 84 24-107 62-152 (176)
152 3rw6_A Nuclear RNA export fact 98.2 2.6E-06 8.9E-11 67.2 6.4 64 45-110 169-236 (267)
153 3e4g_A ATP synthase subunit S, 98.0 2.4E-06 8.3E-11 62.9 3.3 15 137-151 135-149 (176)
154 3rw6_A Nuclear RNA export fact 97.9 1.8E-05 6.3E-10 62.4 6.8 79 67-147 167-257 (267)
155 4fs7_A Uncharacterized protein 97.8 0.00056 1.9E-08 57.0 13.5 186 18-221 180-375 (394)
156 4gt6_A Cell surface protein; l 97.3 0.0014 4.7E-08 54.6 10.1 76 24-103 243-320 (394)
157 4gt6_A Cell surface protein; l 97.2 0.0044 1.5E-07 51.5 11.4 148 18-174 200-367 (394)
158 4fs7_A Uncharacterized protein 97.1 0.011 3.6E-07 49.2 13.5 62 160-228 293-358 (394)
159 4h09_A Hypothetical leucine ri 97.0 0.0087 3E-07 49.3 11.3 145 20-172 191-341 (379)
160 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00096 3.3E-08 50.0 4.0 13 161-173 154-166 (197)
161 4h09_A Hypothetical leucine ri 96.7 0.024 8.1E-07 46.7 12.1 168 17-193 152-341 (379)
162 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0014 5E-08 49.0 3.2 118 19-153 37-169 (197)
163 3rfe_A Platelet glycoprotein I 94.8 0.023 7.9E-07 39.4 3.4 55 26-83 11-68 (130)
164 3rfe_A Platelet glycoprotein I 94.6 0.098 3.3E-06 36.1 6.3 36 71-106 32-67 (130)
165 2lz0_A Uncharacterized protein 49.5 18 0.0006 23.3 3.4 39 64-103 14-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3.4e-25 Score=182.34 Aligned_cols=199 Identities=26% Similarity=0.359 Sum_probs=157.7
Q ss_pred CCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEe
Q 041505 22 NPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLT 100 (248)
Q Consensus 22 l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 100 (248)
..+++.|++++|. +..+|..+ .+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++.+++|++|+
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 5788889999887 55788877 8889999999777655 78888888899999999887655 7788888888999999
Q ss_pred ccCccCCcccccc------------cCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcce
Q 041505 101 LNCCSNLQRLPDE------------LGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGR 168 (248)
Q Consensus 101 l~~~~~~~~~~~~------------~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~ 168 (248)
+++|+..+.+|.. +++|+.|++++ |.+. .+|..++.+++|+.|++++|.++.+|..+..+++|++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~--n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW--TGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE--ECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcC--CCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCE
Confidence 9888888888764 55677888888 4455 5788888888999999999988888888888889999
Q ss_pred ecccCccccccCCCC---CcccceeccccccccccchhhcccccccccccccccccCcchhchH
Q 041505 169 LYLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRSE 229 (248)
Q Consensus 169 L~l~~n~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~~ 229 (248)
|++++|.+.+.+|.. +++|++|++++|.....++..+ ..+++|+.|++++|.+...-+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI---HRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG---GGCTTCCEEECTTCTTCCCCC
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh---hcCCCCCEEeCCCCCchhhcc
Confidence 999888877777754 4778888888887766666543 455688888888877654433
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=5.4e-26 Score=185.96 Aligned_cols=214 Identities=20% Similarity=0.229 Sum_probs=161.2
Q ss_pred hccchH---hhhhhhcCCCCccEEEccC-CCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcC
Q 041505 8 HALELF---SLYAFKQNNPHIVVLNLRD-CKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 8 ~~~~l~---~l~~~l~~l~~L~~L~l~~-~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
+.+.+. .+|+.++.+++|++|++++ |.+.+.+|..+ .+++|++|++++|.+.+.+|..+.++++|++|++++|.+
T Consensus 58 ~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 137 (313)
T 1ogq_A 58 SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137 (313)
T ss_dssp ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc
Confidence 344444 4677788888888888884 77667778777 888888888877777767888888888888888888877
Q ss_pred cCcCCccccCCCCCcEEeccCccCCcccccccC----CCCceEecccCCcccccccccccCCCCcCeEEccCCcCc-ccc
Q 041505 83 LNSLPSGLCKLKLLNYLTLNCCSNLQRLPDELG----NLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFE-RIP 157 (248)
Q Consensus 83 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp 157 (248)
.+.+|..+..+++|++|++++|.+.+.+|..+. +++.|+++. |.+.+.+|..++.++ |+.|++++|.++ ..|
T Consensus 138 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~--N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~ 214 (313)
T 1ogq_A 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR--NRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214 (313)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS--SEEEEECCGGGGGCC-CSEEECCSSEEEECCG
T ss_pred CCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC--CeeeccCChHHhCCc-ccEEECcCCcccCcCC
Confidence 778888888888888888888887777776554 456777877 667666777788776 888888888885 456
Q ss_pred hhhhccCCcceecccCccccccCCC--CCcccceeccccccccccchhhcccccccccccccccccCcchhc
Q 041505 158 ESVIQLSKLGRLYLRYWERLQSLPK--LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMR 227 (248)
Q Consensus 158 ~~l~~~~~L~~L~l~~n~~~~~l~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~ 227 (248)
..+..+++|++|++++|.+....+. .+++|++|+++++......+.. +..+++|+.|++++|.+...
T Consensus 215 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG---LTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG---GGGCTTCCEEECCSSEEEEE
T ss_pred HHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH---HhcCcCCCEEECcCCccccc
Confidence 6778888888888888876544443 3478888888887443344433 44566888888888888744
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3.2e-25 Score=182.47 Aligned_cols=214 Identities=24% Similarity=0.293 Sum_probs=181.5
Q ss_pred chhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCc
Q 041505 5 VDDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 5 ~~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
++++.+.+..+|+.++.+++|++|++++|.+. .+|..+ .+++|++|++++|.+. .+|..++++++|++|++++|...
T Consensus 86 L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 86 LELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp EEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC
T ss_pred EEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc
Confidence 35566778889988999999999999999855 899888 9999999999887765 88999999999999999999899
Q ss_pred CcCCccccC---------CCCCcEEeccCccCCccccccc---CCCCceEecccCCcccccccccccCCCCcCeEEccCC
Q 041505 84 NSLPSGLCK---------LKLLNYLTLNCCSNLQRLPDEL---GNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKN 151 (248)
Q Consensus 84 ~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n 151 (248)
+.+|..++. +++|++|++++|.+. .+|..+ ++|+.|++++ |.+.+ +|..++.+++|+.|++++|
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~--N~l~~-l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN--SPLSA-LGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEES--SCCCC-CCGGGGGCTTCCEEECTTC
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccC--CCCCc-CchhhccCCCCCEEECcCC
Confidence 999988765 999999999998766 777654 4677889988 55663 7778999999999999998
Q ss_pred cC-cccchhhhccCCcceecccCccccccCCCC---CcccceeccccccccccchhhcccccccccccccccccCcchhc
Q 041505 152 NF-ERIPESVIQLSKLGRLYLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMR 227 (248)
Q Consensus 152 ~l-~~lp~~l~~~~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~ 227 (248)
.+ +.+|..+..+++|++|++++|...+.+|.. +++|++|++++|.....+|..+. .+++++.+++..+.+...
T Consensus 240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~---~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA---QLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG---GSCTTCEEECCGGGSCC-
T ss_pred cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh---hccCceEEeCCHHHHHHH
Confidence 87 577888999999999999999988888864 48899999999988888876555 555889898888876554
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2.2e-25 Score=182.29 Aligned_cols=209 Identities=18% Similarity=0.165 Sum_probs=179.8
Q ss_pred ccchH-hhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcC
Q 041505 9 ALELF-SLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSL 86 (248)
Q Consensus 9 ~~~l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 86 (248)
++.+. .+|..++.+++|++|++++|.+.+.+|..+ .+++|++|++++|.+...+|..+..+++|++|++++|.+.+.+
T Consensus 86 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 165 (313)
T 1ogq_A 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165 (313)
T ss_dssp ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred CCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC
Confidence 45555 577889999999999999999777889888 9999999999888887788999999999999999999888899
Q ss_pred CccccCCC-CCcEEeccCccCCcccccccCC--CCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhcc
Q 041505 87 PSGLCKLK-LLNYLTLNCCSNLQRLPDELGN--LEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQL 163 (248)
Q Consensus 87 ~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~--l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~ 163 (248)
|..++.++ +|++|++++|.+.+..|..+.. ++.|++++ |.+.+..|..++.+++|+.|++++|.++..+..+..+
T Consensus 166 p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l 243 (313)
T 1ogq_A 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR--NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243 (313)
T ss_dssp CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCS--SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCC
T ss_pred CHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcC--CcccCcCCHHHhcCCCCCEEECCCCceeeecCccccc
Confidence 99999998 9999999999988888876654 66899988 7787778889999999999999999998666668889
Q ss_pred CCcceecccCccccccCCCC---CcccceeccccccccccchhhcccccccccccccccccCc
Q 041505 164 SKLGRLYLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNW 223 (248)
Q Consensus 164 ~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~ 223 (248)
++|++|++++|.+.+.+|.. +++|++|+++++.....++.. ..+++|+.+++.+|.
T Consensus 244 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~----~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG----GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS----TTGGGSCGGGTCSSS
T ss_pred CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC----ccccccChHHhcCCC
Confidence 99999999999887777764 478999999988544344432 567799999999997
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.2e-24 Score=197.78 Aligned_cols=205 Identities=20% Similarity=0.160 Sum_probs=105.8
Q ss_pred hhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCC
Q 041505 16 YAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLK 94 (248)
Q Consensus 16 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 94 (248)
|..++.+++|++|++++|.+.+.+|..+ .++.|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|.+++.++
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 3444444455555555554444444444 455555555555544444555555555555555555555555555555555
Q ss_pred CCcEEeccCccCCcccccccC---CCCceEecccCCcccccccc------------------------------------
Q 041505 95 LLNYLTLNCCSNLQRLPDELG---NLEALWISREAGVISRWLPE------------------------------------ 135 (248)
Q Consensus 95 ~L~~L~l~~~~~~~~~~~~~~---~l~~L~l~~~~n~~~~~~~~------------------------------------ 135 (248)
+|++|++++|.+.+.+|..+. +++.|++++ |.+.+.+|.
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~--N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT--NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCS--SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCC--CccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 555555555555555554333 333445544 223222222
Q ss_pred ----------------------------------cccCCCCcCeEEccCCcCc-ccchhhhccCCcceecccCccccccC
Q 041505 136 ----------------------------------NIGQLSSLGKLDLQKNNFE-RIPESVIQLSKLGRLYLRYWERLQSL 180 (248)
Q Consensus 136 ----------------------------------~l~~~~~L~~L~l~~n~l~-~lp~~l~~~~~L~~L~l~~n~~~~~l 180 (248)
.++.+++|+.|++++|+++ .+|..++.++.|+.|++++|.+.+.+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 2233445556666666653 55566666666666666666655555
Q ss_pred CCC---CcccceeccccccccccchhhcccccccccccccccccCcch
Q 041505 181 PKL---PCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIE 225 (248)
Q Consensus 181 ~~~---~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~ 225 (248)
|.. +++|++|+++++.-...+|..+. .++.|+.+++++|.+.
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~---~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMS---ALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEECCCGGGG---GCCCCSEEECCSSEEE
T ss_pred ChHHhCCCCCCEEECCCCcccCcCChHHh---CCCCCCEEECcCCccc
Confidence 543 25566666666543334443333 3346666666666664
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=1.5e-23 Score=190.52 Aligned_cols=233 Identities=23% Similarity=0.237 Sum_probs=177.1
Q ss_pred ccchH-hhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcC
Q 041505 9 ALELF-SLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSL 86 (248)
Q Consensus 9 ~~~l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 86 (248)
.+.+. .+|..++.+++|++|++++|.+.+.+|..+ .+++|++|++++|...+.+|..+..+++|++|++++|.+.+.+
T Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence 33344 567778888999999999988777788878 8889999999888887788888888999999999988888888
Q ss_pred CccccCCCCCcEEeccCccCCcccccccC---CCCceEecccCCcccccccccccCCCCcCeEEccCCcCc-ccchhh--
Q 041505 87 PSGLCKLKLLNYLTLNCCSNLQRLPDELG---NLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFE-RIPESV-- 160 (248)
Q Consensus 87 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp~~l-- 160 (248)
|..++.+++|++|++++|.+.+.+|..++ +++.|++++ |.+.+.+|..++.+++|+.|++++|.++ .+|..+
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~--N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN--NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS--SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC--CcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 88888899999999999888888887544 566888888 6677778888899999999999988774 555432
Q ss_pred --------------------------------------------------------------------hccCCcceeccc
Q 041505 161 --------------------------------------------------------------------IQLSKLGRLYLR 172 (248)
Q Consensus 161 --------------------------------------------------------------------~~~~~L~~L~l~ 172 (248)
..+++|+.|+++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 224677888898
Q ss_pred CccccccCCCC---CcccceeccccccccccchhhcccccccccccccccccCcchhchHHHHHHHHhhhhheecccC
Q 041505 173 YWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRSEEFLKMLCKKLNFWQLHYG 247 (248)
Q Consensus 173 ~n~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~~~~~~~l~~~l~~~~~~~~ 247 (248)
+|.+.+.+|.. ++.|+.|+++++.-...+|..+. .++.|+.|++++|.+....++.+..+ +.|+...+.|+
T Consensus 641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~---~L~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~L~ls~N 714 (768)
T 3rgz_A 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG---DLRGLNILDLSSNKLDGRIPQAMSAL-TMLTEIDLSNN 714 (768)
T ss_dssp SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG---GCTTCCEEECCSSCCEECCCGGGGGC-CCCSEEECCSS
T ss_pred CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHh---CCCCCCEEECCCCcccCcCChHHhCC-CCCCEEECcCC
Confidence 88887777764 47788888888754445554444 55588889999998876555444333 44555555554
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=2e-24 Score=192.39 Aligned_cols=217 Identities=13% Similarity=0.151 Sum_probs=141.1
Q ss_pred ccchHhhhhhhcCCCCccEEEccCCCCCcc-----------------cCCcc---ccCcccEEEcCCCCCccccChhhhc
Q 041505 9 ALELFSLYAFKQNNPHIVVLNLRDCKSLKS-----------------LPAGI---HLEFLKELDLLNGTAIEELPSAIEC 68 (248)
Q Consensus 9 ~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~-----------------~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~ 68 (248)
++.+..+|+.++.+++|++|++++|.+.+. +|..+ .+++|++|++++|...+.+|..+++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 345556777777788888888888775553 66665 3777888888777777777777777
Q ss_pred ccCCCEEeccCCc-CcC-cCCccccCC------CCCcEEeccCccCCccccc--ccC---CCCceEecccCCcccccccc
Q 041505 69 LYKLLHLDLEYCE-SLN-SLPSGLCKL------KLLNYLTLNCCSNLQRLPD--ELG---NLEALWISREAGVISRWLPE 135 (248)
Q Consensus 69 l~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~~---~l~~L~l~~~~n~~~~~~~~ 135 (248)
+++|++|++++|. +.+ .+|..++.+ ++|++|++++|.+. .+|. .++ +|+.|+++. |.+.+.+|
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~--N~l~g~ip- 347 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLY--NQLEGKLP- 347 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCS--CCCEEECC-
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcC--CcCccchh-
Confidence 8888888887776 555 677766665 77777777776666 6665 333 455667776 55665666
Q ss_pred cccCCCCcCeEEccCCcCcccchhhhccCC-cceecccCccccccCCCCC-----cccceeccccccccccchhhccccc
Q 041505 136 NIGQLSSLGKLDLQKNNFERIPESVIQLSK-LGRLYLRYWERLQSLPKLP-----CKLHELDAHHCTALESLSGLFSSFE 209 (248)
Q Consensus 136 ~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~-L~~L~l~~n~~~~~l~~~~-----~~L~~L~l~~~~~l~~~~~~~~~l~ 209 (248)
.++.+++|+.|++++|.++.+|..+..+++ |++|++++|.+. .+|..+ ++|++|+++++......+..+....
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 677777777777777777777777777777 777777777644 555432 2567777766633322222221000
Q ss_pred ----ccccccccccccCcchhchHH
Q 041505 210 ----ARTRYFDLRYNYNWIEMRSEE 230 (248)
Q Consensus 210 ----~l~~L~~l~l~~n~i~~~~~~ 230 (248)
.+++|+.|++++|.+...+..
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~ 451 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKE 451 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTH
T ss_pred cccccCCCCCEEECcCCccCcCCHH
Confidence 334556666666665544433
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=5.1e-24 Score=189.77 Aligned_cols=176 Identities=18% Similarity=0.221 Sum_probs=144.9
Q ss_pred hhhhhc--CCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCC-Ccc-ccChhhhcc------cCCCEEeccCCcCc
Q 041505 15 LYAFKQ--NNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGT-AIE-ELPSAIECL------YKLLHLDLEYCESL 83 (248)
Q Consensus 15 l~~~l~--~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~ 83 (248)
+|+.++ .+++|++|++++|.+.+.+|..+ .+++|++|++++|. +.+ .+|..++.+ ++|++|++++|.+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 898888 99999999999999999999989 99999999999888 666 789888887 99999999998776
Q ss_pred CcCCc--cccCCCCCcEEeccCccCCcccccccC---CCCceEecccCCcccccccccccCCCC-cCeEEccCCcCcccc
Q 041505 84 NSLPS--GLCKLKLLNYLTLNCCSNLQRLPDELG---NLEALWISREAGVISRWLPENIGQLSS-LGKLDLQKNNFERIP 157 (248)
Q Consensus 84 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~---~l~~L~l~~~~n~~~~~~~~~l~~~~~-L~~L~l~~n~l~~lp 157 (248)
.+|. .++.+++|++|++++|.+.+.+| .++ +++.|++++ |.+. .+|..++.+++ |+.|++++|.++.+|
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~--N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp 393 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY--NQIT-EIPANFCGFTEQVENLSFAHNKLKYIP 393 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS--SEEE-ECCTTSEEECTTCCEEECCSSCCSSCC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC--Cccc-cccHhhhhhcccCcEEEccCCcCcccc
Confidence 8898 89999999999999998887888 544 566888888 5555 68888888888 999999999988888
Q ss_pred hhhhccC--CcceecccCccccccCCCCCc----------ccceeccccc
Q 041505 158 ESVIQLS--KLGRLYLRYWERLQSLPKLPC----------KLHELDAHHC 195 (248)
Q Consensus 158 ~~l~~~~--~L~~L~l~~n~~~~~l~~~~~----------~L~~L~l~~~ 195 (248)
..+...+ +|++|++++|.+....|..++ +|++|+++++
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC
Confidence 7665544 788888888776655544332 5666666655
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=4.1e-23 Score=176.83 Aligned_cols=62 Identities=21% Similarity=0.178 Sum_probs=31.1
Q ss_pred cccccCCCCcCeEEccCCcCccc-chhhhccCCcceecccCccccccCCCC---Ccccceeccccc
Q 041505 134 PENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLYLRYWERLQSLPKL---PCKLHELDAHHC 195 (248)
Q Consensus 134 ~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~~~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~ 195 (248)
|..++.+++|+.|++++|.++.+ |..+..+++|++|++++|.+....+.. +++|++|+++++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence 33455555666666666655443 335555555555555555443222221 245555555544
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=5.1e-22 Score=160.11 Aligned_cols=215 Identities=20% Similarity=0.128 Sum_probs=168.6
Q ss_pred hhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCc-Cc
Q 041505 6 DDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCE-SL 83 (248)
Q Consensus 6 ~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~ 83 (248)
+.+...++.+|..+ .+++++|++++|.+.+..+..+ .+++|++|++++|.+....|..+.++++|++|++++|. +.
T Consensus 17 ~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 17 SCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp ECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred EcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 34455677777544 5799999999998544444556 89999999998887666557889999999999999987 44
Q ss_pred CcCCccccCCCCCcEEeccCccCCcccccc---cCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-h
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNLQRLPDE---LGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-S 159 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~ 159 (248)
...|..+..+++|++|++++|.+.+..|.. +++|++|++++ |.+.+..+..++.+++|+.|++++|+++.+|. .
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD--NALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC--CcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 444778999999999999998887665654 45677889988 66665455668999999999999999988875 5
Q ss_pred hhccCCcceecccCccccccCCCC---CcccceeccccccccccchhhcccccccccccccccccCcchhc
Q 041505 160 VIQLSKLGRLYLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMR 227 (248)
Q Consensus 160 l~~~~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~ 227 (248)
+..+++|++|++++|.+....|.. +++|++|+++++. +...+. ..+..+++|+.+++++|.+..+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPT--EALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCH--HHHTTCTTCCEEECCSSCEECS
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCH--HHcccCcccCEEeccCCCccCC
Confidence 889999999999999876554543 4789999999873 333322 2345677999999999998754
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=4.8e-23 Score=187.95 Aligned_cols=216 Identities=16% Similarity=0.156 Sum_probs=160.0
Q ss_pred cchHhhhhhhcCCCCccEEEccCCCCCc-----------------ccCCcc---ccCcccEEEcCCCCCccccChhhhcc
Q 041505 10 LELFSLYAFKQNNPHIVVLNLRDCKSLK-----------------SLPAGI---HLEFLKELDLLNGTAIEELPSAIECL 69 (248)
Q Consensus 10 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~-----------------~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~l 69 (248)
+.+..+|..++.+++|++|++++|.+.+ .+|..+ .+++|++|++++|...+.+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4555588889999999999999998766 278775 68999999998888888899889999
Q ss_pred cCCCEEeccCCc-CcC-cCCccccCCC-------CCcEEeccCccCCccccc--cc---CCCCceEecccCCcccccccc
Q 041505 70 YKLLHLDLEYCE-SLN-SLPSGLCKLK-------LLNYLTLNCCSNLQRLPD--EL---GNLEALWISREAGVISRWLPE 135 (248)
Q Consensus 70 ~~L~~L~l~~~~-~~~-~~~~~l~~l~-------~L~~L~l~~~~~~~~~~~--~~---~~l~~L~l~~~~n~~~~~~~~ 135 (248)
++|++|++++|. +.+ .+|..++.++ +|++|++++|.+. .+|. .+ ++|+.|+++. |.+. .+|
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~--N~l~-~lp- 589 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVH--NKVR-HLE- 589 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTT--SCCC-BCC-
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCC--CCcc-cch-
Confidence 999999999987 666 6787666655 9999999998777 7777 44 4566888888 5555 577
Q ss_pred cccCCCCcCeEEccCCcCcccchhhhccCC-cceecccCccccccCCCCC-----cccceeccccccccccchhhccccc
Q 041505 136 NIGQLSSLGKLDLQKNNFERIPESVIQLSK-LGRLYLRYWERLQSLPKLP-----CKLHELDAHHCTALESLSGLFSSFE 209 (248)
Q Consensus 136 ~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~-L~~L~l~~n~~~~~l~~~~-----~~L~~L~l~~~~~l~~~~~~~~~l~ 209 (248)
.++.+++|+.|++++|.++.+|..+..+++ |++|++++|.+. .+|..+ ++|+.|+++++......+.....+.
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 888899999999999999888888888888 999999998755 666543 2378888877633222221111111
Q ss_pred --ccccccccccccCcchhchHHH
Q 041505 210 --ARTRYFDLRYNYNWIEMRSEEF 231 (248)
Q Consensus 210 --~l~~L~~l~l~~n~i~~~~~~~ 231 (248)
..++|+.|++++|.+...+..+
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~ 692 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTEL 692 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHH
T ss_pred cccCCCcCEEEccCCcCCccCHHH
Confidence 2335666666666666444433
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.1e-22 Score=174.24 Aligned_cols=120 Identities=18% Similarity=0.104 Sum_probs=74.5
Q ss_pred chhhccchHhh-hhhhcCCCCccEEEccCCCCCcccC-Ccc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCc
Q 041505 5 VDDHALELFSL-YAFKQNNPHIVVLNLRDCKSLKSLP-AGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCE 81 (248)
Q Consensus 5 ~~~~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 81 (248)
++++.+.+..+ |..++.+++|++|++++|.+.+.++ ..+ .+++|++|++++|.+....|..++++++|++|++++|.
T Consensus 35 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 114 (455)
T 3v47_A 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN 114 (455)
T ss_dssp EECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCC
Confidence 34455556665 3556777777777777776554553 334 67777777776666655556667777777777777766
Q ss_pred CcCcCCcc--ccCCCCCcEEeccCccCCccccc----ccCCCCceEecc
Q 041505 82 SLNSLPSG--LCKLKLLNYLTLNCCSNLQRLPD----ELGNLEALWISR 124 (248)
Q Consensus 82 ~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~l~~ 124 (248)
+.+..+.. +..+++|++|++++|.+.+..|. .++++++|++++
T Consensus 115 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 65544333 66667777777777666554443 234555666655
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=6.5e-22 Score=170.52 Aligned_cols=217 Identities=19% Similarity=0.119 Sum_probs=136.9
Q ss_pred ccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCC
Q 041505 9 ALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLP 87 (248)
Q Consensus 9 ~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 87 (248)
...+..+|..+ .+++++|++++|.+.+..+..+ .+++|++|++++|.+....|..+.++++|++|++++|.+....+
T Consensus 20 ~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 20 RKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp SCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred CCCcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc
Confidence 44566666544 3577888888877444445566 78888888887776655556777888888888888765554444
Q ss_pred ccccCCCCCcEEeccCccCCcccccc---cCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-hhhcc
Q 041505 88 SGLCKLKLLNYLTLNCCSNLQRLPDE---LGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-SVIQL 163 (248)
Q Consensus 88 ~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~~ 163 (248)
..+..+++|++|++++|.+.+..+.. +.+|++|++.. |.+.+..+..+..+++|+.|++++|.++.+|. .+..+
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD--NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC--TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC--CccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence 45677788888888877766554443 44566777777 55555456667777788888888887776654 56777
Q ss_pred CCcceecccCccccccCCC---CCcccceeccccccccccchhhc---------------------cccccccccccccc
Q 041505 164 SKLGRLYLRYWERLQSLPK---LPCKLHELDAHHCTALESLSGLF---------------------SSFEARTRYFDLRY 219 (248)
Q Consensus 164 ~~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~---------------------~~l~~l~~L~~l~l 219 (248)
++|+.|+++.|.+....+. .+++|+.|++++|..+..++... ..+..+++|+.|++
T Consensus 176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 255 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255 (477)
T ss_dssp TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence 7777777777754332221 23556666666554333332211 12234456666666
Q ss_pred ccCcchhchH
Q 041505 220 NYNWIEMRSE 229 (248)
Q Consensus 220 ~~n~i~~~~~ 229 (248)
++|.+...+.
T Consensus 256 s~n~l~~~~~ 265 (477)
T 2id5_A 256 SYNPISTIEG 265 (477)
T ss_dssp CSSCCCEECT
T ss_pred CCCcCCccCh
Confidence 6666655443
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=4.6e-22 Score=176.15 Aligned_cols=185 Identities=21% Similarity=0.125 Sum_probs=114.8
Q ss_pred hccchHhhhh-hhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCc
Q 041505 8 HALELFSLYA-FKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNS 85 (248)
Q Consensus 8 ~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 85 (248)
+.+.+..+++ .++.+++|++|++++|. +..+|..+ .+++|++|++++|.+....|..+.++++|++|++++|...+.
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred ecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence 3445555553 37778888888888886 55777777 788888888877766555566677788888888887766655
Q ss_pred CCcc-ccCCCCCcEEeccCccCCccc--cc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCccc-c-
Q 041505 86 LPSG-LCKLKLLNYLTLNCCSNLQRL--PD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERI-P- 157 (248)
Q Consensus 86 ~~~~-l~~l~~L~~L~l~~~~~~~~~--~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p- 157 (248)
+|.. +..+++|++|++++|...+.. +. .++++++|++++ |...+..|..++.+++|+.|++++|.++.. |
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY--NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS--CSCEEECTTTTTTCTTCSEEECTTCCEECCTTC
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC--CcCCcCCHHHhcCCccCCeEECCCCcCCCcccc
Confidence 5544 667777777777776665433 22 344555666666 444444455566666666666666665432 2
Q ss_pred hhhhccCCcceecccCccccccCCCC---Ccccceeccccc
Q 041505 158 ESVIQLSKLGRLYLRYWERLQSLPKL---PCKLHELDAHHC 195 (248)
Q Consensus 158 ~~l~~~~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~ 195 (248)
..+..+++|++|++++|.+....|.. +++|++|+++++
T Consensus 419 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence 23555566666666666543333322 345555555554
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=1.5e-22 Score=184.80 Aligned_cols=175 Identities=18% Similarity=0.212 Sum_probs=144.6
Q ss_pred hhhhhc--CCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCC-Ccc-ccChhhhccc-------CCCEEeccCCcC
Q 041505 15 LYAFKQ--NNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGT-AIE-ELPSAIECLY-------KLLHLDLEYCES 82 (248)
Q Consensus 15 l~~~l~--~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~ 82 (248)
+|+.++ .+++|++|++++|.+.+.+|..+ .+++|++|++++|. +.. .+|..++.++ +|++|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 888877 99999999999999899999888 99999999998887 665 6888888776 999999999877
Q ss_pred cCcCCc--cccCCCCCcEEeccCccCCcccccccC---CCCceEecccCCcccccccccccCCCC-cCeEEccCCcCccc
Q 041505 83 LNSLPS--GLCKLKLLNYLTLNCCSNLQRLPDELG---NLEALWISREAGVISRWLPENIGQLSS-LGKLDLQKNNFERI 156 (248)
Q Consensus 83 ~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~---~l~~L~l~~~~n~~~~~~~~~l~~~~~-L~~L~l~~n~l~~l 156 (248)
. .+|. .++.+++|++|++++|.+. .+| .++ +|+.|++++ |.+. .+|..+..+++ |+.|++++|.++.+
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~--N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l 634 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDY--NQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI 634 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCS--SCCS-CCCTTSCEECTTCCEEECCSSCCCSC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcC--Cccc-cchHHHhhccccCCEEECcCCCCCcC
Confidence 6 8898 8999999999999998876 777 555 455888888 5565 68888999998 99999999999988
Q ss_pred chhhhccC--CcceecccCccccccCCCCC--------cccceeccccc
Q 041505 157 PESVIQLS--KLGRLYLRYWERLQSLPKLP--------CKLHELDAHHC 195 (248)
Q Consensus 157 p~~l~~~~--~L~~L~l~~n~~~~~l~~~~--------~~L~~L~l~~~ 195 (248)
|..+...+ +|+.|++++|.+...+|..+ ++|+.|++++|
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 88776654 48888888887755444322 36777777665
No 16
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=3.3e-22 Score=163.37 Aligned_cols=198 Identities=20% Similarity=0.093 Sum_probs=158.4
Q ss_pred CCCCccEEEccCCCCCcccCCcc---ccCcccEEEcCCCCCccccChhhhcc-----cCCCEEeccCCcCcCcCCccccC
Q 041505 21 NNPHIVVLNLRDCKSLKSLPAGI---HLEFLKELDLLNGTAIEELPSAIECL-----YKLLHLDLEYCESLNSLPSGLCK 92 (248)
Q Consensus 21 ~l~~L~~L~l~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~ 92 (248)
.+++|++|++++|.+.+.+|..+ .+++|++|++++|.+... |..++.+ ++|++|++++|.+.+..|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 68999999999999777888763 799999999987776555 8778887 99999999999887777788999
Q ss_pred CCCCcEEeccCccCCcc--cc-----cccCCCCceEecccCCcccc--ccc-ccccCCCCcCeEEccCCcCcccc--hhh
Q 041505 93 LKLLNYLTLNCCSNLQR--LP-----DELGNLEALWISREAGVISR--WLP-ENIGQLSSLGKLDLQKNNFERIP--ESV 160 (248)
Q Consensus 93 l~~L~~L~l~~~~~~~~--~~-----~~~~~l~~L~l~~~~n~~~~--~~~-~~l~~~~~L~~L~l~~n~l~~lp--~~l 160 (248)
+++|++|++++|.+.+. +| ..++++++|++++ |.+.+ .++ ..+..+++|+.|++++|.++..+ ..+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN--AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT--SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC--CcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 99999999999887654 22 4567888999998 55552 233 33568899999999999997654 456
Q ss_pred hccCCcceecccCccccccCCCCC-cccceeccccccccccchhhcccccccccccccccccCcchhc
Q 041505 161 IQLSKLGRLYLRYWERLQSLPKLP-CKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMR 227 (248)
Q Consensus 161 ~~~~~L~~L~l~~n~~~~~l~~~~-~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~ 227 (248)
..+++|++|++++|.+. .+|..+ ++|++|+++++ .++..+. +..+++|+.+++++|.+...
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N-~l~~~p~----~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYN-RLDRNPS----PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSS-CCCSCCC----TTTSCEEEEEECTTCTTTCC
T ss_pred hhcCCCCEEECCCCccC-hhhhhccCCceEEECCCC-CCCCChh----HhhCCCCCEEeccCCCCCCC
Confidence 67899999999999765 666643 68999999987 4455433 56778999999999998754
No 17
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=9.1e-22 Score=168.06 Aligned_cols=202 Identities=21% Similarity=0.173 Sum_probs=90.5
Q ss_pred hcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCc
Q 041505 19 KQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLN 97 (248)
Q Consensus 19 l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 97 (248)
+..+++|++|++++|.+.+..+..+ .+++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|+
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 163 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence 4444444444444444222222233 444444444433332221122344444444444444433332233344444444
Q ss_pred EEeccCccCCccccc----ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCccc-chhhhccCCcceeccc
Q 041505 98 YLTLNCCSNLQRLPD----ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLYLR 172 (248)
Q Consensus 98 ~L~l~~~~~~~~~~~----~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~~~~L~~L~l~ 172 (248)
+|++++|+..+.++. .+.+|+.|++++ |.+. .+| .+..+++|+.|++++|.++.+ |..+..+++|+.|+++
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~--n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAM--CNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEECTT--SCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecCCC--CcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECC
Confidence 444444433333332 233344455544 2232 122 345555555555555555444 3455555666666666
Q ss_pred CccccccCCC---CCcccceeccccccccccchhhcccccccccccccccccCcchhc
Q 041505 173 YWERLQSLPK---LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMR 227 (248)
Q Consensus 173 ~n~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~ 227 (248)
+|.+....+. .+++|++|+++++ .+..++. ..+..+++|+.+++++|.+.-+
T Consensus 240 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 240 QSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPH--DLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp TCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCT--TTTSSCTTCCEEECCSSCEECS
T ss_pred CCceeEEChhhhcCCCCCCEEECCCC-CCCccCh--hHhccccCCCEEEcCCCCccCC
Confidence 5544332222 2355666666655 2232221 2233455677777777766543
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=5.4e-21 Score=169.28 Aligned_cols=232 Identities=20% Similarity=0.154 Sum_probs=117.2
Q ss_pred hhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccC----------------------
Q 041505 7 DHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELP---------------------- 63 (248)
Q Consensus 7 ~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~---------------------- 63 (248)
++.+.+..+|..++.+++|++|++++|.+.+..|..+ .++.|++|++++|.....+|
T Consensus 285 l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp CTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred ccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence 3444556666666666666666666665444334344 55555555555544433333
Q ss_pred -----hhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCccccc----ccCCCCceEecccCCccccccc
Q 041505 64 -----SAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPD----ELGNLEALWISREAGVISRWLP 134 (248)
Q Consensus 64 -----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~l~~~~n~~~~~~~ 134 (248)
..+.++++|++|++++|.+.+..|..+..+++|++|++++|...+..+. .+++++.|++++ |...+..|
T Consensus 365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~ 442 (606)
T 3t6q_A 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH--SLLDISSE 442 (606)
T ss_dssp EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT--CCCBTTCT
T ss_pred ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC--CccCCcCH
Confidence 3344444444444444444434444444455555555555444333222 233444555555 34444445
Q ss_pred ccccCCCCcCeEEccCCcCcc--cc--hhhhccCCcceecccCccccccCCCC---Ccccceeccccccccccchhhccc
Q 041505 135 ENIGQLSSLGKLDLQKNNFER--IP--ESVIQLSKLGRLYLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSS 207 (248)
Q Consensus 135 ~~l~~~~~L~~L~l~~n~l~~--lp--~~l~~~~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~~~ 207 (248)
..++.+++|+.|++++|.++. ++ ..+..+++|++|++++|.+....|.. +++|++|+++++......+ ..
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~ 519 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI---EA 519 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG---GG
T ss_pred HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh---hH
Confidence 556666666666666666542 11 34566666666666666554433332 3566667766653222222 22
Q ss_pred ccccccccccccccCcchhchHHHHHHHHhhhhheecc
Q 041505 208 FEARTRYFDLRYNYNWIEMRSEEFLKMLCKKLNFWQLH 245 (248)
Q Consensus 208 l~~l~~L~~l~l~~n~i~~~~~~~~~~l~~~l~~~~~~ 245 (248)
+..++.| .+++++|.+...+++.+..+ +.++...+.
T Consensus 520 l~~l~~L-~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~ 555 (606)
T 3t6q_A 520 LSHLKGI-YLNLASNHISIILPSLLPIL-SQQRTINLR 555 (606)
T ss_dssp GTTCCSC-EEECCSSCCCCCCGGGHHHH-HTSSEEECT
T ss_pred hCccccc-EEECcCCcccccCHhhcccC-CCCCEEeCC
Confidence 3344455 66666666665544444333 334444333
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=2.7e-21 Score=162.52 Aligned_cols=181 Identities=18% Similarity=0.107 Sum_probs=99.6
Q ss_pred ccchHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChh-hhcccCCCEEeccCCcCcCc
Q 041505 9 ALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSA-IECLYKLLHLDLEYCESLNS 85 (248)
Q Consensus 9 ~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~ 85 (248)
.+.+..++ ..++.+++|++|++++|.+.+..|..+ .+++|++|++++|.+. .+|.. +.++++|++|++++|.+.+.
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~ 156 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI 156 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCcc
Confidence 34444444 245555666666666655333333444 5666666666444433 44433 45666666666666555544
Q ss_pred CCccccCCCCCcEEeccCccCCcccccccCCCCc----------------------------------------eEeccc
Q 041505 86 LPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEA----------------------------------------LWISRE 125 (248)
Q Consensus 86 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~----------------------------------------L~l~~~ 125 (248)
.+..+..+++|++|++++|.+.+.-...+++++. |++++
T Consensus 157 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~- 235 (390)
T 3o6n_A 157 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH- 235 (390)
T ss_dssp CTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCS-
T ss_pred ChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCC-
Confidence 4555666666666666665544322222222222 22222
Q ss_pred CCcccccccccccCCCCcCeEEccCCcCccc-chhhhccCCcceecccCccccccCCC---CCcccceeccccc
Q 041505 126 AGVISRWLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLYLRYWERLQSLPK---LPCKLHELDAHHC 195 (248)
Q Consensus 126 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~~~~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~ 195 (248)
|.+.+ +..++.+++|+.|++++|.++.+ |..+..+++|++|++++|.+.. ++. .+++|++|+++++
T Consensus 236 -n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 236 -NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp -SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred -CCCcc--cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCC
Confidence 11221 13466677788888888887654 5677777888888888776432 222 3467777777766
No 20
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=7.3e-22 Score=169.20 Aligned_cols=214 Identities=22% Similarity=0.177 Sum_probs=130.1
Q ss_pred hhccchHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcC
Q 041505 7 DHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLN 84 (248)
Q Consensus 7 ~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 84 (248)
++.+.+..++ ..++.+++|++|++++|.+.+..+..+ .+++|++|++++|.+....+..+.++++|++|++++|.+..
T Consensus 82 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 82 LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred CcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 3444455543 445666666666666665443334445 56666666665555433223345666666666666655443
Q ss_pred cCCccccCCCCCcEEeccCccCCccccc----ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCccc-chh
Q 041505 85 SLPSGLCKLKLLNYLTLNCCSNLQRLPD----ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERI-PES 159 (248)
Q Consensus 85 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p~~ 159 (248)
..+..+..+++|++|++++|+..+.++. .+.+|+.|++++ |.+.+ +| .+..+++|+.|++++|.++.+ |..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~--n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~ 237 (452)
T 3zyi_A 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM--CNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGS 237 (452)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT--SCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGG
T ss_pred eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC--Ccccc-cc-cccccccccEEECcCCcCcccCccc
Confidence 3344556666666666666555555443 344566777766 44442 33 467777888888888887655 557
Q ss_pred hhccCCcceecccCccccccCCC---CCcccceeccccccccccchhhcccccccccccccccccCcchhc
Q 041505 160 VIQLSKLGRLYLRYWERLQSLPK---LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMR 227 (248)
Q Consensus 160 l~~~~~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~ 227 (248)
+..+++|+.|++++|.+....+. .+++|+.|+++++ .+..++. ..+..+++|+.+++++|.+.-+
T Consensus 238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPH--DLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT--TSSTTCTTCCEEECCSSCEECS
T ss_pred ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccCh--HHhccccCCCEEEccCCCcCCC
Confidence 77888888888888866544333 2467888888876 3343332 2344567888888888887654
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=2.9e-21 Score=165.47 Aligned_cols=229 Identities=17% Similarity=0.055 Sum_probs=172.7
Q ss_pred ccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCC
Q 041505 9 ALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLP 87 (248)
Q Consensus 9 ~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 87 (248)
...+..+|..+. +++++|++++|.+.+..+..+ .+++|++|++++|.+....+..+.++++|++|++++|.+....+
T Consensus 63 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 140 (452)
T 3zyi_A 63 RRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS 140 (452)
T ss_dssp SSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred CCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh
Confidence 345667776443 789999999998666667777 89999999998887766666789999999999999987766556
Q ss_pred ccccCCCCCcEEeccCccCCccccc---ccCCCCceEecccCCccccccc-ccccCCCCcCeEEccCCcCcccchhhhcc
Q 041505 88 SGLCKLKLLNYLTLNCCSNLQRLPD---ELGNLEALWISREAGVISRWLP-ENIGQLSSLGKLDLQKNNFERIPESVIQL 163 (248)
Q Consensus 88 ~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~lp~~l~~~ 163 (248)
..+..+++|++|++++|.+....+. .+++|+.|+++.+. ..+.++ ..+..+++|+.|++++|+++.+| .+..+
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l 217 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK--KLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPL 217 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTC
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC--CccccChhhccCCCCCCEEECCCCcccccc-ccccc
Confidence 6688899999999999876643333 45567788998742 333344 46899999999999999999887 47789
Q ss_pred CCcceecccCccccccCCC---CCcccceeccccccccccchhhcccccccccccccccccCcchhchHHHHHHHHhhhh
Q 041505 164 SKLGRLYLRYWERLQSLPK---LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRSEEFLKMLCKKLN 240 (248)
Q Consensus 164 ~~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~~~~~~~l~~~l~ 240 (248)
++|++|++++|.+....|. .+++|+.|+++++......+ ..+..+++|+.|++++|.+...+.+.+..+ +.|+
T Consensus 218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~ 293 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER---NAFDGLASLVELNLAHNNLSSLPHDLFTPL-RYLV 293 (452)
T ss_dssp TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCSCCCTTSSTTC-TTCC
T ss_pred ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH---HHhcCCCCCCEEECCCCcCCccChHHhccc-cCCC
Confidence 9999999999987655444 34789999999874332222 335567799999999999987765443332 4444
Q ss_pred heeccc
Q 041505 241 FWQLHY 246 (248)
Q Consensus 241 ~~~~~~ 246 (248)
...++.
T Consensus 294 ~L~L~~ 299 (452)
T 3zyi_A 294 ELHLHH 299 (452)
T ss_dssp EEECCS
T ss_pred EEEccC
Confidence 444443
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=8.3e-22 Score=169.85 Aligned_cols=219 Identities=19% Similarity=0.108 Sum_probs=125.4
Q ss_pred hhhccchHhh-hhhhcCCCCccEEEccCCCCCcccCC-cc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcC
Q 041505 6 DDHALELFSL-YAFKQNNPHIVVLNLRDCKSLKSLPA-GI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 6 ~~~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
+++.+.+..+ |..++.+++|++|++++|. +..+|. .+ .+++|++|++++|.+....|..+.++++|++|++++|.+
T Consensus 62 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 140 (477)
T 2id5_A 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC
T ss_pred ECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc
Confidence 3445566666 4668888888888888887 445554 44 788888888877776666666778888888888888776
Q ss_pred cCcCCccccCCCCCcEEeccCccCCccccc---ccCCCCceEecccC----------------------Ccccccccccc
Q 041505 83 LNSLPSGLCKLKLLNYLTLNCCSNLQRLPD---ELGNLEALWISREA----------------------GVISRWLPENI 137 (248)
Q Consensus 83 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~l~~~~----------------------n~~~~~~~~~l 137 (248)
.+..+..+..+++|++|++++|.+.+..+. .+++|+.|++..+. +...+.++...
T Consensus 141 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 220 (477)
T 2id5_A 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220 (477)
T ss_dssp CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT
T ss_pred ceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc
Confidence 666666677777777777777655433222 23334444444411 11222223222
Q ss_pred cCCCCcCeEEccCCcCcccch-hhhccCCcceecccCccccccCCC---CCcccceeccccccccccchhhccccccccc
Q 041505 138 GQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLYLRYWERLQSLPK---LPCKLHELDAHHCTALESLSGLFSSFEARTR 213 (248)
Q Consensus 138 ~~~~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~ 213 (248)
....+|+.|++++|.++.+|. .+..+++|++|++++|.+....+. .+++|++|+++++......+ ..+..+++
T Consensus 221 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~ 297 (477)
T 2id5_A 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP---YAFRGLNY 297 (477)
T ss_dssp TTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT---TTBTTCTT
T ss_pred ccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH---HHhcCccc
Confidence 233355555555566655553 456666777777766654322221 23456666665542211111 12223445
Q ss_pred ccccccccCcchhch
Q 041505 214 YFDLRYNYNWIEMRS 228 (248)
Q Consensus 214 L~~l~l~~n~i~~~~ 228 (248)
|+.|++++|.+...+
T Consensus 298 L~~L~L~~N~l~~~~ 312 (477)
T 2id5_A 298 LRVLNVSGNQLTTLE 312 (477)
T ss_dssp CCEEECCSSCCSCCC
T ss_pred CCEEECCCCcCceeC
Confidence 555555555554443
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2.6e-21 Score=171.23 Aligned_cols=184 Identities=17% Similarity=0.093 Sum_probs=103.5
Q ss_pred hccchHhhhh-hhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccCh-hhhcccCCCEEeccCCcCcC
Q 041505 8 HALELFSLYA-FKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPS-AIECLYKLLHLDLEYCESLN 84 (248)
Q Consensus 8 ~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~ 84 (248)
+.+.+..+++ .++.+++|++|++++|.+.+..|..+ .+++|++|++++|.+. .+|. .++++++|++|++++|.+.+
T Consensus 83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC
Confidence 3444555442 55566666666666665444334444 5666666666555443 3333 34666666666666665555
Q ss_pred cCCccccCCCCCcEEeccCccCCcccccccCCCCceEecccC--------------------------------------
Q 041505 85 SLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWISREA-------------------------------------- 126 (248)
Q Consensus 85 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~-------------------------------------- 126 (248)
..|..++.+++|++|++++|.+.+.-+..++++..|+++++.
T Consensus 162 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~ 241 (597)
T 3oja_B 162 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 241 (597)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCS
T ss_pred CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCC
Confidence 555556666666666666665543322233333222222100
Q ss_pred CcccccccccccCCCCcCeEEccCCcCccc-chhhhccCCcceecccCccccccCCC---CCcccceeccccc
Q 041505 127 GVISRWLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLYLRYWERLQSLPK---LPCKLHELDAHHC 195 (248)
Q Consensus 127 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~~~~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~ 195 (248)
|.+. -+..++.+++|+.|++++|.++.+ |..+..+++|+.|++++|.+.. +|. .+++|+.|++++|
T Consensus 242 n~l~--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 242 NNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp SCCC--CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred CCCC--CChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCC
Confidence 1122 124466777788888888877544 5677777888888887776533 222 2467777777766
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=2.8e-21 Score=165.01 Aligned_cols=229 Identities=18% Similarity=0.121 Sum_probs=172.7
Q ss_pred ccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCC
Q 041505 9 ALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLP 87 (248)
Q Consensus 9 ~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 87 (248)
...++.+|..+. ++++.|++++|.+.+..+..+ .+++|++|++++|.+....+..+.++++|++|++++|.+....+
T Consensus 52 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 52 RKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp SCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT
T ss_pred CCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH
Confidence 445677776553 789999999998555555677 89999999998887665556789999999999999987665555
Q ss_pred ccccCCCCCcEEeccCccCCccccc---ccCCCCceEecccCCccccccc-ccccCCCCcCeEEccCCcCcccchhhhcc
Q 041505 88 SGLCKLKLLNYLTLNCCSNLQRLPD---ELGNLEALWISREAGVISRWLP-ENIGQLSSLGKLDLQKNNFERIPESVIQL 163 (248)
Q Consensus 88 ~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~lp~~l~~~ 163 (248)
..+..+++|++|++++|.+....+. .+++|+.|++..+ .....++ ..+.++++|+.|++++|.++.+|. +..+
T Consensus 130 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~--~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l 206 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL--KRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPL 206 (440)
T ss_dssp TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC--TTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTC
T ss_pred hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC--CCcceeCcchhhcccccCeecCCCCcCccccc-cCCC
Confidence 6789999999999999876644333 4567778899874 3333344 468999999999999999999874 7889
Q ss_pred CCcceecccCccccccCCCC---CcccceeccccccccccchhhcccccccccccccccccCcchhchHHHHHHHHhhhh
Q 041505 164 SKLGRLYLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRSEEFLKMLCKKLN 240 (248)
Q Consensus 164 ~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~~~~~~~l~~~l~ 240 (248)
++|++|++++|.+....+.. +++|+.|+++++. +..+. ...+..+++|+.|++++|.+...+.+.+..+ +.|+
T Consensus 207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~ 282 (440)
T 3zyj_A 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIE--RNAFDNLQSLVEINLAHNNLTLLPHDLFTPL-HHLE 282 (440)
T ss_dssp SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEEC--TTSSTTCTTCCEEECTTSCCCCCCTTTTSSC-TTCC
T ss_pred cccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEC--hhhhcCCCCCCEEECCCCCCCccChhHhccc-cCCC
Confidence 99999999999766544443 4789999999874 33332 2345567799999999999987765444332 4444
Q ss_pred heeccc
Q 041505 241 FWQLHY 246 (248)
Q Consensus 241 ~~~~~~ 246 (248)
...++.
T Consensus 283 ~L~L~~ 288 (440)
T 3zyj_A 283 RIHLHH 288 (440)
T ss_dssp EEECCS
T ss_pred EEEcCC
Confidence 444443
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=2e-21 Score=158.18 Aligned_cols=215 Identities=20% Similarity=0.124 Sum_probs=140.8
Q ss_pred hhccchHhhhhh-hcCCCCccEEEccCCCCCc--ccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcC
Q 041505 7 DHALELFSLYAF-KQNNPHIVVLNLRDCKSLK--SLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 7 ~~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~--~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
++.+.+..+|.. ++.+++|++|++++|.+.. ..+..+ .+++|++|++++|.+ ..+|..+..+++|++|++++|.+
T Consensus 35 L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~l~~~~~~l~~L~~L~l~~n~l 113 (306)
T 2z66_A 35 LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNL 113 (306)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EEEEEEEETCTTCCEEECTTSEE
T ss_pred CCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-ccChhhcCCCCCCCEEECCCCcc
Confidence 344555566643 5666777777777765332 123334 566777777755543 34565567777777777777655
Q ss_pred cCcCC-ccccCCCCCcEEeccCccCCcccccc---cCCCCceEecccCCcccc-cccccccCCCCcCeEEccCCcCccc-
Q 041505 83 LNSLP-SGLCKLKLLNYLTLNCCSNLQRLPDE---LGNLEALWISREAGVISR-WLPENIGQLSSLGKLDLQKNNFERI- 156 (248)
Q Consensus 83 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~l~~L~l~~~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~l- 156 (248)
.+..+ ..+..+++|++|++++|...+..+.. ++++++|++++ |.+.+ .+|..++.+++|+.|++++|.++.+
T Consensus 114 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 191 (306)
T 2z66_A 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG--NSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191 (306)
T ss_dssp ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT--CEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC--CccccccchhHHhhCcCCCEEECCCCCcCCcC
Confidence 44333 45777788888888887766555543 34566777777 55554 4677788888888888888888766
Q ss_pred chhhhccCCcceecccCccccccCCC---CCcccceeccccccccccchhhccccccc-ccccccccccCcchhc
Q 041505 157 PESVIQLSKLGRLYLRYWERLQSLPK---LPCKLHELDAHHCTALESLSGLFSSFEAR-TRYFDLRYNYNWIEMR 227 (248)
Q Consensus 157 p~~l~~~~~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~l-~~L~~l~l~~n~i~~~ 227 (248)
|..+..+++|++|++++|.+....+. .+++|++|+++++......+. .+..+ ++|+.+++++|.+..+
T Consensus 192 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ---ELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS---SCCCCCTTCCEEECTTCCEECS
T ss_pred HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH---HHHhhhccCCEEEccCCCeecc
Confidence 56778888888888888865433221 247788888888743332222 23344 3899999999998765
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=4e-22 Score=162.28 Aligned_cols=213 Identities=24% Similarity=0.191 Sum_probs=167.0
Q ss_pred hccchHhhhhhhcCCCCccEEEccCCCCCcccCCc-c-ccCcccEEEcCCCCCcc--ccChhhhcccCCCEEeccCCcCc
Q 041505 8 HALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAG-I-HLEFLKELDLLNGTAIE--ELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 8 ~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
+...++.+|..+ .+++++|++++|. +..+|.. + .+++|++|++++|.+.. ..+..+.++++|++|++++|.+
T Consensus 15 ~~~~l~~ip~~~--~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i- 90 (306)
T 2z66_A 15 NSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV- 90 (306)
T ss_dssp CSSCCSSCCSCC--CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-
T ss_pred CCCCcccCCCCC--CCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-
Confidence 344577777644 3789999999998 5567665 4 89999999998877643 2367788899999999999754
Q ss_pred CcCCccccCCCCCcEEeccCccCCcccc----cccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcc--cc
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNLQRLP----DELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFER--IP 157 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~--lp 157 (248)
..+|..+..+++|++|++++|.+.+..+ ..++++++|++++ |...+..+..++.+++|+.|++++|.++. +|
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH--THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT--SCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC--CcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 4677789999999999999987665432 3456788999998 66766677889999999999999999964 78
Q ss_pred hhhhccCCcceecccCccccccCCCC---CcccceeccccccccccchhhcccccccccccccccccCcchhchH
Q 041505 158 ESVIQLSKLGRLYLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRSE 229 (248)
Q Consensus 158 ~~l~~~~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~~ 229 (248)
..+..+++|++|++++|.+....|.. +++|++|+++++. +...+. ..+..+++|+.+++++|.+....+
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDT--FPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCS--GGGTTCTTCCEEECTTSCCCBCSS
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccCh--hhccCcccCCEeECCCCCCcccCH
Confidence 88999999999999999876554543 4789999999874 333322 234567799999999999977654
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=5.9e-21 Score=157.01 Aligned_cols=216 Identities=18% Similarity=0.189 Sum_probs=146.0
Q ss_pred chhhccchHhhhh-hhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccC-------------------
Q 041505 5 VDDHALELFSLYA-FKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELP------------------- 63 (248)
Q Consensus 5 ~~~~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~------------------- 63 (248)
++++.+.+..++. .++.+++|++|++++|.+.+..|..+ .+++|++|++++|.+. .+|
T Consensus 57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~ 135 (330)
T 1xku_A 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITK 135 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCB
T ss_pred EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCcccc
Confidence 4556667777774 67788888888888887555557777 7888888888666532 333
Q ss_pred ---hhhhcccCCCEEeccCCcCcC--cCCccccCCCCCcEEeccCccCCccccc-ccCCCCceEecccCCcccccccccc
Q 041505 64 ---SAIECLYKLLHLDLEYCESLN--SLPSGLCKLKLLNYLTLNCCSNLQRLPD-ELGNLEALWISREAGVISRWLPENI 137 (248)
Q Consensus 64 ---~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~l~~~~n~~~~~~~~~l 137 (248)
..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+. .+|. ...++++|++++ |.+.+..+..+
T Consensus 136 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~L~~L~l~~--n~l~~~~~~~~ 212 (330)
T 1xku_A 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDG--NKITKVDAASL 212 (330)
T ss_dssp BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCCTTCSEEECTT--SCCCEECTGGG
T ss_pred cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccccccCCEEECCC--CcCCccCHHHh
Confidence 235566666666666655432 44555666777777777775544 3443 335677888877 55665556778
Q ss_pred cCCCCcCeEEccCCcCcccch-hhhccCCcceecccCccccccCCCC---Ccccceeccccccccccchhh-cccc---c
Q 041505 138 GQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLYLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGL-FSSF---E 209 (248)
Q Consensus 138 ~~~~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~-~~~l---~ 209 (248)
+.+++|+.|++++|.++.++. .+..+++|++|++++|.+. .+|.. .++|++|+++++. ++.++.. +... .
T Consensus 213 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~ 290 (330)
T 1xku_A 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNT 290 (330)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCT
T ss_pred cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc-CCccChhhcCCccccc
Confidence 888899999999998876654 7788889999999988654 55543 3678888888773 3443322 2111 1
Q ss_pred ccccccccccccCcchh
Q 041505 210 ARTRYFDLRYNYNWIEM 226 (248)
Q Consensus 210 ~l~~L~~l~l~~n~i~~ 226 (248)
..+.+..+++.+|.+..
T Consensus 291 ~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TSCCCSEEECCSSSSCG
T ss_pred ccccccceEeecCcccc
Confidence 34678888888888764
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=1.4e-20 Score=158.27 Aligned_cols=232 Identities=18% Similarity=0.064 Sum_probs=157.5
Q ss_pred hhhccchHhhhhh-hcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCc
Q 041505 6 DDHALELFSLYAF-KQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 6 ~~~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
..+.+.+..+|.. +..+++|++|++++|.+.+..+..+ .+++|++|++++|.+....|..++++++|++|++++|.+.
T Consensus 51 ~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 130 (390)
T 3o6n_A 51 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130 (390)
T ss_dssp EEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC
Confidence 3455667788854 6789999999999998544444566 8999999999888766655677899999999999997655
Q ss_pred CcCCcc-ccCCCCCcEEeccCccCCcccccc---cCCCCceEecccCCcccccccccccC--------------------
Q 041505 84 NSLPSG-LCKLKLLNYLTLNCCSNLQRLPDE---LGNLEALWISREAGVISRWLPENIGQ-------------------- 139 (248)
Q Consensus 84 ~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~---~~~l~~L~l~~~~n~~~~~~~~~l~~-------------------- 139 (248)
.+|.. +..+++|++|++++|.+.+..|.. +++++.|++++ |.+.+.....+..
T Consensus 131 -~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L 207 (390)
T 3o6n_A 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS--NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 207 (390)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS--SCCSBCCGGGCTTCSEEECCSSCCSEEECCSSC
T ss_pred -cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC--CcCCccccccccccceeecccccccccCCCCcc
Confidence 55554 588999999999998877665554 45677888887 4443221111111
Q ss_pred -----------------CCCcCeEEccCCcCcccchhhhccCCcceecccCccccccCCC---CCcccceeccccccccc
Q 041505 140 -----------------LSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPK---LPCKLHELDAHHCTALE 199 (248)
Q Consensus 140 -----------------~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~~~l~ 199 (248)
.++|+.|++++|.++.. ..+..+++|++|++++|.+....|. .+++|++|+++++ .+.
T Consensus 208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~ 285 (390)
T 3o6n_A 208 EELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLV 285 (390)
T ss_dssp SEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCC
T ss_pred eEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCc
Confidence 12455555555555544 3567788888888888876554443 2478888888886 344
Q ss_pred cchhhcccccccccccccccccCcchhchHHHHHHHHhhhhheecccC
Q 041505 200 SLSGLFSSFEARTRYFDLRYNYNWIEMRSEEFLKMLCKKLNFWQLHYG 247 (248)
Q Consensus 200 ~~~~~~~~l~~l~~L~~l~l~~n~i~~~~~~~~~~l~~~l~~~~~~~~ 247 (248)
.++... ..+++|+.|++++|.+...+..+ .. ++.|+...+..+
T Consensus 286 ~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~-~~-l~~L~~L~L~~N 328 (390)
T 3o6n_A 286 ALNLYG---QPIPTLKVLDLSHNHLLHVERNQ-PQ-FDRLENLYLDHN 328 (390)
T ss_dssp EEECSS---SCCTTCCEEECCSSCCCCCGGGH-HH-HTTCSEEECCSS
T ss_pred ccCccc---CCCCCCCEEECCCCcceecCccc-cc-cCcCCEEECCCC
Confidence 443322 35678899999999887664432 22 345555554443
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=6e-21 Score=158.42 Aligned_cols=216 Identities=19% Similarity=0.096 Sum_probs=144.4
Q ss_pred hhhccchHhhhh-hhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccCh-hhhcccCCCEEeccCCcC
Q 041505 6 DDHALELFSLYA-FKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPS-AIECLYKLLHLDLEYCES 82 (248)
Q Consensus 6 ~~~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~ 82 (248)
+++.+.+..++. .++.+++|++|++++|.+.+..+..+ .+++|++|++++|.+. .+|. .++++++|++|++++|.+
T Consensus 58 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l 136 (353)
T 2z80_A 58 DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPY 136 (353)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCC
T ss_pred ECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCC
Confidence 445556666664 57777888888888877544445556 7788888888666544 4454 377788888888887654
Q ss_pred cCcCCc--cccCCCCCcEEeccCccCCccc-ccccC---CCCceEecccCCcccccccccccCCCCcCeEEccCCcCccc
Q 041505 83 LNSLPS--GLCKLKLLNYLTLNCCSNLQRL-PDELG---NLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERI 156 (248)
Q Consensus 83 ~~~~~~--~l~~l~~L~~L~l~~~~~~~~~-~~~~~---~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~l 156 (248)
. .+|. .+..+++|++|++++|+..+.+ +..+. ++++|++++ |.+.+..|..++.+++|+.|++++|.++.+
T Consensus 137 ~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 213 (353)
T 2z80_A 137 K-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA--SDLQSYEPKSLKSIQNVSHLILHMKQHILL 213 (353)
T ss_dssp S-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE--TTCCEECTTTTTTCSEEEEEEEECSCSTTH
T ss_pred c-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC--CCcCccCHHHHhccccCCeecCCCCccccc
Confidence 4 4444 5777888888888877544443 33343 455677777 556655677788888888888888888777
Q ss_pred chh-hhccCCcceecccCccccccCCC----------------------------------CCcccceeccccccccccc
Q 041505 157 PES-VIQLSKLGRLYLRYWERLQSLPK----------------------------------LPCKLHELDAHHCTALESL 201 (248)
Q Consensus 157 p~~-l~~~~~L~~L~l~~n~~~~~l~~----------------------------------~~~~L~~L~l~~~~~l~~~ 201 (248)
|.. +..+++|++|++++|.+....+. .+++|++|+++++ .++.+
T Consensus 214 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i 292 (353)
T 2z80_A 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSV 292 (353)
T ss_dssp HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCC
T ss_pred hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCcc
Confidence 654 44578888888888865432111 1356777887776 34444
Q ss_pred hhhcccccccccccccccccCcchhch
Q 041505 202 SGLFSSFEARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 202 ~~~~~~l~~l~~L~~l~l~~n~i~~~~ 228 (248)
+.. .+..+++|+.+++++|.+..+.
T Consensus 293 ~~~--~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 293 PDG--IFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CTT--TTTTCTTCCEEECCSSCBCCCH
T ss_pred CHH--HHhcCCCCCEEEeeCCCccCcC
Confidence 332 2345678888889888887664
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=3.1e-21 Score=167.93 Aligned_cols=117 Identities=13% Similarity=0.086 Sum_probs=78.8
Q ss_pred chhhccchHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcC
Q 041505 5 VDDHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 5 ~~~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
++++.+.+..++ ..++.+++|++|++++|.+.+..|..+ .+++|++|++++|.+. .+|.. .+++|++|++++|.+
T Consensus 26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l 102 (520)
T 2z7x_B 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAF 102 (520)
T ss_dssp EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCC
T ss_pred EECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCcc
Confidence 344555566665 467778888888888887555556666 7888888888666543 56654 778888888887766
Q ss_pred cC-cCCccccCCCCCcEEeccCccCCcccccccCCC--CceEecc
Q 041505 83 LN-SLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNL--EALWISR 124 (248)
Q Consensus 83 ~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~l~~ 124 (248)
.+ .+|..++.+++|++|++++|.+.+.....+.++ +.|++.+
T Consensus 103 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 103 DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp SSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEE
T ss_pred ccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeec
Confidence 65 467778888888888887776654333444444 4555544
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.2e-20 Score=166.90 Aligned_cols=233 Identities=16% Similarity=0.029 Sum_probs=158.3
Q ss_pred hhhccchHhhhhh-hcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCc
Q 041505 6 DDHALELFSLYAF-KQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 6 ~~~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
..+.+.+..+|+. +..+++|++|++++|.+.+..|..+ .+++|++|++++|.+....|..++++++|++|++++|.+.
T Consensus 57 ~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (597)
T 3oja_B 57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136 (597)
T ss_dssp EESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence 4455667778754 6779999999999998555555577 8999999999888766655667899999999999998666
Q ss_pred CcCCccccCCCCCcEEeccCccCCccccccc---CCCCceEecccCCcccccccccccC----------------C----
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNLQRLPDEL---GNLEALWISREAGVISRWLPENIGQ----------------L---- 140 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~l~~~~n~~~~~~~~~l~~----------------~---- 140 (248)
+..+..++.+++|++|++++|.+.+..|..+ ++|+.|++++ |.+.+..+..+.. .
T Consensus 137 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~ 214 (597)
T 3oja_B 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS--NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVE 214 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT--SCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCS
T ss_pred CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC--CCCCCcChhhhhhhhhhhcccCccccccCCchhh
Confidence 4444446889999999999988877766544 4566888888 4444321111111 1
Q ss_pred -----------------CCcCeEEccCCcCcccchhhhccCCcceecccCccccccCCCC---Ccccceecccccccccc
Q 041505 141 -----------------SSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPKL---PCKLHELDAHHCTALES 200 (248)
Q Consensus 141 -----------------~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~~~l~~ 200 (248)
++|+.|++++|.++.. ..+..+++|++|++++|.+....|.. +++|+.|+++++ .+..
T Consensus 215 ~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 292 (597)
T 3oja_B 215 ELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVA 292 (597)
T ss_dssp EEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCE
T ss_pred eeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCC
Confidence 2344445555554443 45677888888888888765554432 477888888876 3344
Q ss_pred chhhcccccccccccccccccCcchhchHHHHHHHHhhhhheecccC
Q 041505 201 LSGLFSSFEARTRYFDLRYNYNWIEMRSEEFLKMLCKKLNFWQLHYG 247 (248)
Q Consensus 201 ~~~~~~~l~~l~~L~~l~l~~n~i~~~~~~~~~~l~~~l~~~~~~~~ 247 (248)
++... ..+++|+.|++++|.+...+..+ .. ++.|+...+.++
T Consensus 293 l~~~~---~~l~~L~~L~Ls~N~l~~i~~~~-~~-l~~L~~L~L~~N 334 (597)
T 3oja_B 293 LNLYG---QPIPTLKVLDLSHNHLLHVERNQ-PQ-FDRLENLYLDHN 334 (597)
T ss_dssp EECSS---SCCTTCCEEECCSSCCCCCGGGH-HH-HTTCSEEECCSS
T ss_pred CCccc---ccCCCCcEEECCCCCCCccCccc-cc-CCCCCEEECCCC
Confidence 43322 35678999999999888664432 22 355555555443
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=2.3e-21 Score=169.66 Aligned_cols=169 Identities=17% Similarity=0.097 Sum_probs=102.2
Q ss_pred hhhccchHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCc
Q 041505 6 DDHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 6 ~~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
+++.+.+..++ ..++.+++|++|++++|.+.+..|..+ .+++|++|++++|.+....|..++++++|++|++++|.+.
T Consensus 32 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 111 (549)
T 2z81_A 32 DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111 (549)
T ss_dssp ECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS
T ss_pred ECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccc
Confidence 34445555554 456677777777777776444444555 6777777777666554444445777777777777776555
Q ss_pred C-cCCccccCCCCCcEEeccCccCCccccc-ccC---CCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch
Q 041505 84 N-SLPSGLCKLKLLNYLTLNCCSNLQRLPD-ELG---NLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE 158 (248)
Q Consensus 84 ~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~---~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~ 158 (248)
+ ..|..++.+++|++|++++|...+.+|. .+. ++++|++++ |.+.+..|..++.+++|+.|++++|.++.+|.
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 189 (549)
T 2z81_A 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA--LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189 (549)
T ss_dssp SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE--TTCCEECTTTTTTCSEEEEEEEECSBSTTHHH
T ss_pred ccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC--CcccccChhhhhccccCceEecccCcccccch
Confidence 4 3455677777777777777665555542 333 344666666 45555556666666666666666555554444
Q ss_pred hh-hccCCcceecccCccc
Q 041505 159 SV-IQLSKLGRLYLRYWER 176 (248)
Q Consensus 159 ~l-~~~~~L~~L~l~~n~~ 176 (248)
.+ ..+++|++|++++|.+
T Consensus 190 ~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 190 IFADILSSVRYLELRDTNL 208 (549)
T ss_dssp HHHHSTTTBSEEEEESCBC
T ss_pred hhHhhcccccEEEccCCcc
Confidence 32 3456666666666654
No 33
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=2e-20 Score=150.03 Aligned_cols=211 Identities=19% Similarity=0.103 Sum_probs=162.7
Q ss_pred chHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCcc
Q 041505 11 ELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSG 89 (248)
Q Consensus 11 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 89 (248)
.+..+|..+. +++++|++++|.+.+..+..+ .+++|++|++++|.+....+..+.++++|++|++++|.+.+..+..
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 4556666443 679999999998554444466 8999999999888765555567999999999999998877777788
Q ss_pred ccCCCCCcEEeccCccCCccccc---ccCCCCceEecccCCcccc-cccccccCCCCcCeEEccCCcCcccc-hhhhccC
Q 041505 90 LCKLKLLNYLTLNCCSNLQRLPD---ELGNLEALWISREAGVISR-WLPENIGQLSSLGKLDLQKNNFERIP-ESVIQLS 164 (248)
Q Consensus 90 l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~lp-~~l~~~~ 164 (248)
+..+++|++|++++|.+.+..+. .++++++|++++ |.+.+ .+|..++.+++|+.|++++|+++.++ ..+..++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH--NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS--SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcC--CccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 99999999999999887655443 455677999988 55654 36889999999999999999998775 4677777
Q ss_pred Ccc----eecccCccccccCCCC--CcccceeccccccccccchhhcccccccccccccccccCcchhch
Q 041505 165 KLG----RLYLRYWERLQSLPKL--PCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 165 ~L~----~L~l~~n~~~~~l~~~--~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~ 228 (248)
+++ .|++++|.+....+.. ..+|++|+++++. ++.++. ..+..+++|+.+++++|.+..+.
T Consensus 174 ~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPD--GIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCT--TTTTTCCSCCEEECCSSCBCCCT
T ss_pred hccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCH--hHhcccccccEEEccCCcccccC
Confidence 777 8899999765433332 2479999999874 454433 33456779999999999998664
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.1e-20 Score=155.50 Aligned_cols=214 Identities=18% Similarity=0.148 Sum_probs=137.6
Q ss_pred chhhccchHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcC
Q 041505 5 VDDHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 5 ~~~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
++++.+.+..++ ..++.+++|++|++++|.+.+..|..+ .+++|++|++++|.+ ..+|..+. ++|++|++++|.+
T Consensus 59 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~--~~L~~L~l~~n~i 135 (332)
T 2ft3_A 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLP--SSLVELRIHDNRI 135 (332)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-CSCCSSCC--TTCCEEECCSSCC
T ss_pred EECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-CccCcccc--ccCCEEECCCCcc
Confidence 445566677775 468888899999999988555556667 788899999866654 35565443 6777777777665
Q ss_pred cCcCCccccCCCCCcEEeccCccCCc--cccccc-----------------------CCCCceEecccCCcccccccccc
Q 041505 83 LNSLPSGLCKLKLLNYLTLNCCSNLQ--RLPDEL-----------------------GNLEALWISREAGVISRWLPENI 137 (248)
Q Consensus 83 ~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~-----------------------~~l~~L~l~~~~n~~~~~~~~~l 137 (248)
....+..+..+++|++|++++|.... ..+..+ .++++|++++ |.+.+..+..+
T Consensus 136 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~--n~i~~~~~~~l 213 (332)
T 2ft3_A 136 RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH--NKIQAIELEDL 213 (332)
T ss_dssp CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCS--SCCCCCCTTSS
T ss_pred CccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCC--CcCCccCHHHh
Confidence 54444456777777777777766532 223222 2455555555 44554445667
Q ss_pred cCCCCcCeEEccCCcCcccch-hhhccCCcceecccCccccccCCCC---Ccccceeccccccccccchhh-ccccc---
Q 041505 138 GQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLYLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGL-FSSFE--- 209 (248)
Q Consensus 138 ~~~~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~-~~~l~--- 209 (248)
..+++|+.|++++|.++.++. .+..+++|++|++++|.+. .+|.. +++|++|+++++. ++.++.. +....
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGV 291 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCS
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC-CCccChhHcccccccc
Confidence 777788888888887766653 6777788888888877544 55543 3667777777763 3333321 21111
Q ss_pred ccccccccccccCcch
Q 041505 210 ARTRYFDLRYNYNWIE 225 (248)
Q Consensus 210 ~l~~L~~l~l~~n~i~ 225 (248)
..+.|+.+++.+|.+.
T Consensus 292 ~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSCCBSEEECCSSSSC
T ss_pred ccccccceEeecCccc
Confidence 2456777788887765
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=8.9e-21 Score=165.04 Aligned_cols=76 Identities=18% Similarity=0.079 Sum_probs=56.4
Q ss_pred chhhccchHhh-hhhhcCCCCccEEEccCCCCCcccCCccccCcccEEEcCCCCCcc-ccChhhhcccCCCEEeccCCcC
Q 041505 5 VDDHALELFSL-YAFKQNNPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIE-ELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 5 ~~~~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
++++.+.+..+ |..++.+++|++|++++|. +..+|.. .+++|++|++++|.+.. .+|..++++++|++|++++|.+
T Consensus 50 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 50 LIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp EECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred EecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence 34556667776 4678888899999999887 4567666 78888888887777655 4677788888888888777654
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=1.5e-20 Score=151.48 Aligned_cols=191 Identities=23% Similarity=0.232 Sum_probs=154.6
Q ss_pred chhhccchHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCcccc-ChhhhcccCCCEEeccCCc
Q 041505 5 VDDHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEEL-PSAIECLYKLLHLDLEYCE 81 (248)
Q Consensus 5 ~~~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~ 81 (248)
++++.+.+..++ ..++.+++|++|++++|.+.+..|..+ .+++|++|++++|..+..+ |..+..+++|++|++++|.
T Consensus 37 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~ 116 (285)
T 1ozn_A 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116 (285)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc
Confidence 345667777877 468899999999999998665557777 8999999999888745555 6779999999999999988
Q ss_pred CcCcCCccccCCCCCcEEeccCccCCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCccc-c
Q 041505 82 SLNSLPSGLCKLKLLNYLTLNCCSNLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERI-P 157 (248)
Q Consensus 82 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p 157 (248)
+.+..|..+..+++|++|++++|.+.+..+. .+++++.|++++ |.+.+..+..+..+++|+.|++++|.++.+ |
T Consensus 117 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG--NRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC--CcccccCHHHhcCccccCEEECCCCcccccCH
Confidence 8777788899999999999999877655444 355778999998 556654445699999999999999999766 7
Q ss_pred hhhhccCCcceecccCccccccCCC---CCcccceeccccccc
Q 041505 158 ESVIQLSKLGRLYLRYWERLQSLPK---LPCKLHELDAHHCTA 197 (248)
Q Consensus 158 ~~l~~~~~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~~~ 197 (248)
..+..+++|++|++++|.+....+. ..++|++|++++++-
T Consensus 195 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 7899999999999999976543222 357899999988744
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=4.3e-21 Score=159.27 Aligned_cols=234 Identities=16% Similarity=0.198 Sum_probs=169.6
Q ss_pred hhhccchHhhhhhhcCCCCccEEEccCCCCCcccCC-cc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCc
Q 041505 6 DDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPA-GI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 6 ~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
+.+.+.++.+|..+. ++|++|++++|. +..++. .+ .+++|++|++++|.+....|..+.++++|++|++++|.+.
T Consensus 37 ~~~~~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 37 KGSSGSLNSIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp ECCSTTCSSCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eCCCCCccccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 445566777886554 589999999998 455554 66 8999999999888766655677999999999999998766
Q ss_pred CcCCccccCCCCCcEEeccCccCCccccc-----ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCccc-c
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNLQRLPD-----ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERI-P 157 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p 157 (248)
+..+..+..+++|++|++++|.+.+ +|. .++++++|+++++. ......+..++.+++|+.|++++|.++.+ |
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred cCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 4444448899999999999977663 443 45677899998831 34443466799999999999999999765 7
Q ss_pred hhhhccCCcceecccCccccccCCC----CCcccceeccccccccccch-hh----------------------------
Q 041505 158 ESVIQLSKLGRLYLRYWERLQSLPK----LPCKLHELDAHHCTALESLS-GL---------------------------- 204 (248)
Q Consensus 158 ~~l~~~~~L~~L~l~~n~~~~~l~~----~~~~L~~L~l~~~~~l~~~~-~~---------------------------- 204 (248)
..+..+++|++|++++|.+ +.+|. .+++|++|+++++.. ...+ ..
T Consensus 192 ~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDL-DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp TTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBC-TTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred HHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCcc-ccccccccccccccchhhccccccccccCcchhhh
Confidence 7899999999999999975 33333 257899999988732 2211 00
Q ss_pred cccccccccccccccccCcchhchHHHHHHHHhhhhheecccC
Q 041505 205 FSSFEARTRYFDLRYNYNWIEMRSEEFLKMLCKKLNFWQLHYG 247 (248)
Q Consensus 205 ~~~l~~l~~L~~l~l~~n~i~~~~~~~~~~l~~~l~~~~~~~~ 247 (248)
...+..+++|+.|++++|.+...+...+.. ++.|+...+.++
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~-l~~L~~L~L~~N 311 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDR-LTSLQKIWLHTN 311 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSS
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHHHhc-CCCCCEEEeeCC
Confidence 112335678888888888887665433332 345555555443
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=3.3e-21 Score=169.38 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=78.3
Q ss_pred chhhccchHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcC
Q 041505 5 VDDHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 5 ~~~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
++++.+.+..++ ..++.+++|++|++++|.+.+..|..+ .+++|++|++++|.+ ..+|.. .+++|++|++++|.+
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~--~l~~L~~L~Ls~N~l 133 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-QNISCC--PMASLRHLDLSFNDF 133 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC-CEECSC--CCTTCSEEECCSSCC
T ss_pred EECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC-CccCcc--ccccCCEEECCCCCc
Confidence 345566666666 467778888888888887555556666 788888888866664 466664 788888888888766
Q ss_pred cC-cCCccccCCCCCcEEeccCccCCcccccccCCC--CceEecc
Q 041505 83 LN-SLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNL--EALWISR 124 (248)
Q Consensus 83 ~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~l~~ 124 (248)
.+ ..|..++.+++|++|++++|.+.+.....+.++ +.|++..
T Consensus 134 ~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 134 DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178 (562)
T ss_dssp SBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEE
T ss_pred cccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeec
Confidence 55 345678888888888888876654333333334 4444433
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=9.4e-21 Score=173.78 Aligned_cols=168 Identities=20% Similarity=0.093 Sum_probs=123.1
Q ss_pred hhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCcccc-ChhhhcccCCCEEeccCCcCc
Q 041505 6 DDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEEL-PSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 6 ~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~ 83 (248)
+.+...++.+|. -.+++++|++++|.+.+..|..+ .+++|++|++++|..+..+ |..+.++++|++|++++|.+.
T Consensus 10 dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 10 FYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp EESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred EccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 444556777776 35788889999888655666777 8888999999888666666 567888888999999888777
Q ss_pred CcCCccccCCCCCcEEeccCccCCccccc-----ccCCCCceEecccCCccccccc-ccccCCCCcCeEEccCCcCcc-c
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNLQRLPD-----ELGNLEALWISREAGVISRWLP-ENIGQLSSLGKLDLQKNNFER-I 156 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----~~~~l~~L~l~~~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~-l 156 (248)
+..|..++.+++|++|++++|.+.+..|. .+++|++|++++ |.+.+..+ ..++++++|+.|++++|.++. .
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~--N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK--NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEES--CCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCC--CcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 77788888888899999988877765544 345667888888 55554333 568888888888888888754 3
Q ss_pred chhhhcc--CCcceecccCccccc
Q 041505 157 PESVIQL--SKLGRLYLRYWERLQ 178 (248)
Q Consensus 157 p~~l~~~--~~L~~L~l~~n~~~~ 178 (248)
+..+..+ ++|+.|+++.|.+..
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCC
T ss_pred HHHcccccCCccceEECCCCcccc
Confidence 4555554 666666666665443
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=2.9e-20 Score=153.05 Aligned_cols=222 Identities=18% Similarity=0.148 Sum_probs=116.3
Q ss_pred chHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCcc
Q 041505 11 ELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSG 89 (248)
Q Consensus 11 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 89 (248)
.+..+|..+ .+++++|++++|.+.+..+..+ .+++|++|++++|.+....|..+.++++|++|++++|.+. .+|..
T Consensus 44 ~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~ 120 (332)
T 2ft3_A 44 GLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPN 120 (332)
T ss_dssp CCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSS
T ss_pred CccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcc
Confidence 344444333 2456666666665333333344 5666666666555544444555666666666666654332 44444
Q ss_pred ccCCCCCcEEeccCccCCccccc---ccCCCCceEecccCCccc--ccccccccCCCCcCeEEccCCcCcccchhhhccC
Q 041505 90 LCKLKLLNYLTLNCCSNLQRLPD---ELGNLEALWISREAGVIS--RWLPENIGQLSSLGKLDLQKNNFERIPESVIQLS 164 (248)
Q Consensus 90 l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~--~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~ 164 (248)
+. ++|++|++++|.+.+..+. .+++++.|++++ |... +..+..++.+ +|+.|++++|+++.+|..+. +
T Consensus 121 ~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~ 193 (332)
T 2ft3_A 121 LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG--NPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--E 193 (332)
T ss_dssp CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS--CCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--S
T ss_pred cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCC--CccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--C
Confidence 33 5566666666554432222 233445555555 3332 2334445555 66666666666665654432 5
Q ss_pred CcceecccCccccccCCC---CCcccceeccccccccccchhhcccccccccccccccccCcchhchHHHHHHHHhhhhh
Q 041505 165 KLGRLYLRYWERLQSLPK---LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRSEEFLKMLCKKLNF 241 (248)
Q Consensus 165 ~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~~~~~~~l~~~l~~ 241 (248)
+|++|++++|.+....+. ..++|++|+++++. +...+ ...+..+++|+.|++++|.+...+.. +.. ++.|+.
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~--~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~-l~~L~~ 268 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIE--NGSLSFLPTLRELHLDNNKLSRVPAG-LPD-LKLLQV 268 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCC--TTGGGGCTTCCEEECCSSCCCBCCTT-GGG-CTTCCE
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCC--hhHhhCCCCCCEEECCCCcCeecChh-hhc-CccCCE
Confidence 677777777755433322 23567777777653 22222 12344566888888888888755432 111 345555
Q ss_pred eecccC
Q 041505 242 WQLHYG 247 (248)
Q Consensus 242 ~~~~~~ 247 (248)
..+.++
T Consensus 269 L~l~~N 274 (332)
T 2ft3_A 269 VYLHTN 274 (332)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 555443
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=7.7e-21 Score=168.31 Aligned_cols=130 Identities=21% Similarity=0.123 Sum_probs=59.7
Q ss_pred ccCcccEEEcCCCCCccc--cChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCcccc-c---ccCCC
Q 041505 44 HLEFLKELDLLNGTAIEE--LPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLP-D---ELGNL 117 (248)
Q Consensus 44 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~---~~~~l 117 (248)
.+++|++|++++|..... +|..+..+++|++|++++|.+ ..+|..+..+++|++|++++|...+..| . .++++
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 445555555544443322 244455555555555555432 2234445555555555555544443333 1 22334
Q ss_pred CceEecccCCcccccccccccCCCCcCeEEccCCcCcc--cchhhhccCCcceecccCccc
Q 041505 118 EALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFER--IPESVIQLSKLGRLYLRYWER 176 (248)
Q Consensus 118 ~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~--lp~~l~~~~~L~~L~l~~n~~ 176 (248)
+.|++++ |...+..|..++.+++|+.|++++|.++. +|..+..+++|++|++++|.+
T Consensus 427 ~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 427 LYLDISY--TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CEEECTT--SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CEEECcC--CCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 4444444 33333344444444444444444444432 344444444444444444443
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=3.7e-21 Score=157.46 Aligned_cols=207 Identities=15% Similarity=0.077 Sum_probs=117.7
Q ss_pred hhhccchHhhhhh-hcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCc
Q 041505 6 DDHALELFSLYAF-KQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 6 ~~~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
+.+...+...+.. +..+++|++|++++|.+.+..|..+ .+++|++|++++|.+....+ +..+++|++|++++|.+.
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence 3444555555533 4456688888888887544444556 78888888887776544333 778888888888887543
Q ss_pred CcCCccccCCCCCcEEeccCccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccc-hhh-h
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIP-ESV-I 161 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp-~~l-~ 161 (248)
+ ++ ..++|++|++++|.+.+..+..+++++.|++++ |.+.+..+..++.+++|+.|++++|.++.++ ..+ .
T Consensus 94 ~-l~----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~--N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 94 E-LL----VGPSIETLHAANNNISRVSCSRGQGKKNIYLAN--NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp E-EE----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCS--SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred c-cc----CCCCcCEEECCCCccCCcCccccCCCCEEECCC--CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 2 22 235666666666665555555555666666665 4444434445555666666666666654432 222 2
Q ss_pred ccCCcceecccCcccccc---------------------CCC---CCcccceeccccccccccchhhccccccccccccc
Q 041505 162 QLSKLGRLYLRYWERLQS---------------------LPK---LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDL 217 (248)
Q Consensus 162 ~~~~L~~L~l~~n~~~~~---------------------l~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l 217 (248)
.+++|++|++++|.+... +|. .+++|++|+++++ .+..++.. +..+++|+.+
T Consensus 167 ~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~---~~~l~~L~~L 242 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA---LRFSQNLEHF 242 (317)
T ss_dssp GTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTT---CCCCTTCCEE
T ss_pred ccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhH---hhcCCCCCEE
Confidence 455555555555543211 111 1244445555444 22333222 2345577777
Q ss_pred ccccCcch
Q 041505 218 RYNYNWIE 225 (248)
Q Consensus 218 ~l~~n~i~ 225 (248)
++++|.+.
T Consensus 243 ~l~~N~~~ 250 (317)
T 3o53_A 243 DLRGNGFH 250 (317)
T ss_dssp ECTTCCCB
T ss_pred EccCCCcc
Confidence 77777776
No 43
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=153.82 Aligned_cols=197 Identities=19% Similarity=0.098 Sum_probs=154.2
Q ss_pred CCCccEEEccCCCCCcccCCcc---ccCcccEEEcCCCCCccccC----hhhhcccCCCEEeccCCcCcCcCCccccCCC
Q 041505 22 NPHIVVLNLRDCKSLKSLPAGI---HLEFLKELDLLNGTAIEELP----SAIECLYKLLHLDLEYCESLNSLPSGLCKLK 94 (248)
Q Consensus 22 l~~L~~L~l~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 94 (248)
+++|++|++++|.+.+..|..+ .+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4679999999999777777764 58999999998888766544 3356799999999999988777778899999
Q ss_pred CCcEEeccCccCCcc-------cccccCCCCceEecccCCcccccccc----cccCCCCcCeEEccCCcCccc-chhhhc
Q 041505 95 LLNYLTLNCCSNLQR-------LPDELGNLEALWISREAGVISRWLPE----NIGQLSSLGKLDLQKNNFERI-PESVIQ 162 (248)
Q Consensus 95 ~L~~L~l~~~~~~~~-------~~~~~~~l~~L~l~~~~n~~~~~~~~----~l~~~~~L~~L~l~~n~l~~l-p~~l~~ 162 (248)
+|++|++++|.+.+. .+..+++|++|++++ |.+.. ++. .++.+++|+.|++++|+++.. |..+..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 246 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN--TGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR 246 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS--SCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC--CCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence 999999999886542 124677888999998 54542 232 257889999999999999766 766666
Q ss_pred c---CCcceecccCccccccCCC-CCcccceeccccccccccchhhcccccccccccccccccCcchhc
Q 041505 163 L---SKLGRLYLRYWERLQSLPK-LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMR 227 (248)
Q Consensus 163 ~---~~L~~L~l~~n~~~~~l~~-~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~ 227 (248)
+ ++|++|++++|.+. .+|. .+++|++|+++++ .++.++. +..+++|+.|++++|.+...
T Consensus 247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N-~l~~~~~----~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSN-RLNRAPQ----PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSC-CCCSCCC----TTSCCCCSCEECSSTTTSCC
T ss_pred ccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCC-cCCCCch----hhhCCCccEEECcCCCCCCC
Confidence 5 79999999999766 5665 4579999999987 4444432 45678999999999998754
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=2.7e-20 Score=166.96 Aligned_cols=167 Identities=23% Similarity=0.099 Sum_probs=88.2
Q ss_pred hhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcC
Q 041505 6 DDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLN 84 (248)
Q Consensus 6 ~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 84 (248)
+.+...++++|..+. +++++|++++|.+.+..+..+ .+++|++|++++|.+....|..++++++|++|++++|.+..
T Consensus 10 ~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 10 DCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp ECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred ECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc
Confidence 333445555554432 566666666665333222334 56666666665555544445556666666666666654433
Q ss_pred cCCccccCCCCCcEEeccCccCCccccccc---CCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-hh
Q 041505 85 SLPSGLCKLKLLNYLTLNCCSNLQRLPDEL---GNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-SV 160 (248)
Q Consensus 85 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l 160 (248)
..+..++.+++|++|++++|.+.+..|..+ .+|++|+++. |...+..+..++++++|+.|++++|.++.++. .+
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH--NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCS--SCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCC--CcccccCchhhcccccCCEEEccCCcccccCHHHh
Confidence 222345666666666666655543333332 3444555655 44444445555666666666666666654432 22
Q ss_pred h--ccCCcceecccCccc
Q 041505 161 I--QLSKLGRLYLRYWER 176 (248)
Q Consensus 161 ~--~~~~L~~L~l~~n~~ 176 (248)
. .+++|++|+++.|.+
T Consensus 166 ~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQI 183 (680)
T ss_dssp GGGTTCEESEEECTTCCC
T ss_pred hccccccccEEECCCCcc
Confidence 2 335566666655543
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=8.2e-20 Score=150.16 Aligned_cols=222 Identities=18% Similarity=0.142 Sum_probs=138.2
Q ss_pred chHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCcc
Q 041505 11 ELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSG 89 (248)
Q Consensus 11 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 89 (248)
.+..+|..+ .+++++|++++|.+.+..+..+ .+++|++|++++|.+....|..+.++++|++|++++|.+ ..+|..
T Consensus 42 ~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~ 118 (330)
T 1xku_A 42 GLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEK 118 (330)
T ss_dssp CCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-SBCCSS
T ss_pred CccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC-CccChh
Confidence 445555433 2567778888776444333355 777888888866666555566777778888888877643 355655
Q ss_pred ccCCCCCcEEeccCccCCccccc---ccCCCCceEecccCCccc--ccccccccCCCCcCeEEccCCcCcccchhhhccC
Q 041505 90 LCKLKLLNYLTLNCCSNLQRLPD---ELGNLEALWISREAGVIS--RWLPENIGQLSSLGKLDLQKNNFERIPESVIQLS 164 (248)
Q Consensus 90 l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~--~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~ 164 (248)
+. ++|++|++++|.+.+..+. .+.+++.|+++. |... +..+..++++++|+.|++++|.++.+|..+. +
T Consensus 119 ~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~ 192 (330)
T 1xku_A 119 MP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT--NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--P 192 (330)
T ss_dssp CC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS--SCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--T
T ss_pred hc--ccccEEECCCCcccccCHhHhcCCccccEEECCC--CcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--c
Confidence 44 6788888877666544433 345566777777 3332 2455667778888888888888777776543 6
Q ss_pred CcceecccCccccccCCC---CCcccceeccccccccccchhhcccccccccccccccccCcchhchHHHHHHHHhhhhh
Q 041505 165 KLGRLYLRYWERLQSLPK---LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRSEEFLKMLCKKLNF 241 (248)
Q Consensus 165 ~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~~~~~~~l~~~l~~ 241 (248)
+|++|++++|.+....+. .+++|++|+++++. +...+. ..+..+++|+.|++++|.+...+..+ .. ++.|+.
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~~~l~~L~~L~L~~N~l~~lp~~l-~~-l~~L~~ 267 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDN--GSLANTPHLRELHLNNNKLVKVPGGL-AD-HKYIQV 267 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECT--TTGGGSTTCCEEECCSSCCSSCCTTT-TT-CSSCCE
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeCh--hhccCCCCCCEEECCCCcCccCChhh-cc-CCCcCE
Confidence 788888888765443333 23678888887763 232221 23445668888888888887553321 11 344454
Q ss_pred eeccc
Q 041505 242 WQLHY 246 (248)
Q Consensus 242 ~~~~~ 246 (248)
..+..
T Consensus 268 L~l~~ 272 (330)
T 1xku_A 268 VYLHN 272 (330)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 44443
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=2.6e-20 Score=163.72 Aligned_cols=77 Identities=18% Similarity=0.100 Sum_probs=57.9
Q ss_pred chhhccchHhhh-hhhcCCCCccEEEccCCCCCcccCCccccCcccEEEcCCCCCcc-ccChhhhcccCCCEEeccCCcC
Q 041505 5 VDDHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIE-ELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 5 ~~~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
++++.+.++.++ ..++.+++|++|++++|. +..+|.. .+++|++|++++|.+.. .+|..++++++|++|++++|.+
T Consensus 81 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 81 LRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred EECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 345566777774 668888999999999987 5577766 78888999997777654 3456788888888888887755
Q ss_pred c
Q 041505 83 L 83 (248)
Q Consensus 83 ~ 83 (248)
.
T Consensus 159 ~ 159 (562)
T 3a79_B 159 R 159 (562)
T ss_dssp C
T ss_pred c
Confidence 3
No 47
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=1.6e-19 Score=149.24 Aligned_cols=223 Identities=19% Similarity=0.241 Sum_probs=119.3
Q ss_pred hhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCc
Q 041505 7 DHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNS 85 (248)
Q Consensus 7 ~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 85 (248)
++.+.+..++. +..+++|++|++++|. +..++ .+ .+++|++|++++|.+. .++. +..+++|++|++++|.....
T Consensus 73 l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~l~~n~~~~~ 147 (347)
T 4fmz_A 73 LNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNEDNIS-DISP-LANLTKMYSLNLGANHNLSD 147 (347)
T ss_dssp CCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECTTSCCC-CCGG-GTTCTTCCEEECTTCTTCCC
T ss_pred ccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEECcCCccc-Cchh-hccCCceeEEECCCCCCccc
Confidence 34445666655 6667777777777775 33343 34 6777777777555533 3333 56666666666666544433
Q ss_pred CCccccCCCCCcEEeccCccCCcccc-cccCCCCceEecccC--------------------CcccccccccccCCCCcC
Q 041505 86 LPSGLCKLKLLNYLTLNCCSNLQRLP-DELGNLEALWISREA--------------------GVISRWLPENIGQLSSLG 144 (248)
Q Consensus 86 ~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~l~~~~--------------------n~~~~~~~~~l~~~~~L~ 144 (248)
.+. +..+++|++|++++|...+..+ ..++++++|+++++. +...+ ++. +..+++|+
T Consensus 148 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~ 224 (347)
T 4fmz_A 148 LSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD-ITP-VANMTRLN 224 (347)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG-GGGCTTCC
T ss_pred ccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC-Cch-hhcCCcCC
Confidence 332 4555555555555544332211 123333344443311 22221 111 55666777
Q ss_pred eEEccCCcCcccchhhhccCCcceecccCccccccCCC--CCcccceeccccccccccchhhcccccccccccccccccC
Q 041505 145 KLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPK--LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYN 222 (248)
Q Consensus 145 ~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n 222 (248)
.|++++|.++.++. +..+++|++|++++|.+.. ++. .+++|++|++++| .+..+ ..+..+++|+.|++++|
T Consensus 225 ~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 225 SLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSN-QISDI----SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSS
T ss_pred EEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCC-ccCCC----hhhcCCCCCCEEECcCC
Confidence 77777777666654 6666777777777764432 221 2366777777666 23332 12445567777777777
Q ss_pred cchhchHHHHHHHHhhhhheecc
Q 041505 223 WIEMRSEEFLKMLCKKLNFWQLH 245 (248)
Q Consensus 223 ~i~~~~~~~~~~l~~~l~~~~~~ 245 (248)
.+...+++.+..+ +.|+...+.
T Consensus 298 ~l~~~~~~~l~~l-~~L~~L~L~ 319 (347)
T 4fmz_A 298 QLGNEDMEVIGGL-TNLTTLFLS 319 (347)
T ss_dssp CCCGGGHHHHHTC-TTCSEEECC
T ss_pred cCCCcChhHhhcc-ccCCEEEcc
Confidence 7665555444332 344444443
No 48
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.9e-19 Score=143.95 Aligned_cols=195 Identities=21% Similarity=0.155 Sum_probs=95.5
Q ss_pred ccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCc
Q 041505 25 IVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCC 104 (248)
Q Consensus 25 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 104 (248)
.+.++++++. +..+|..+. +.+++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 18 ~~~l~~~~~~-l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKK-LTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSC-CSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCC-CCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4555555554 334444332 34555555444433222234555555666665554433222223345555666665554
Q ss_pred cCCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-hhhccCCcceecccCccccccC
Q 041505 105 SNLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLYLRYWERLQSL 180 (248)
Q Consensus 105 ~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~l~~n~~~~~l 180 (248)
.+.+..+. .+.+|++|++++ |.+....+..++.+++|+.|++++|.++.+|. .+..+++|++|++++|.+....
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDR--NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCCcCCHhHcccccCCCEEECCC--CccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 44332222 233444555555 34443334445566666666666666655543 3555666666666666443222
Q ss_pred CC---CCcccceeccccccccccchhhcccccccccccccccccCcchh
Q 041505 181 PK---LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEM 226 (248)
Q Consensus 181 ~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~ 226 (248)
+. .+++|++|+++++ .++.++. ..+..+++|+.+++.+|.+..
T Consensus 174 ~~~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNN-QLKRVPE--GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSSCBCC
T ss_pred hhHhccCCCcCEEECCCC-cCCcCCH--HHhccccCCCEEEecCCCeeC
Confidence 21 1255666666655 2232221 123344566666666666543
No 49
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=3.9e-21 Score=158.26 Aligned_cols=212 Identities=16% Similarity=0.106 Sum_probs=161.2
Q ss_pred hhhcCC--CCccEEEccCCCCCcccCCccccCcccEEEcCCCCCccc-cChhhhcccCCCEEeccCCcCcCcCCccccCC
Q 041505 17 AFKQNN--PHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEE-LPSAIECLYKLLHLDLEYCESLNSLPSGLCKL 93 (248)
Q Consensus 17 ~~l~~l--~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 93 (248)
..+..+ ++++.|++++|.+.+..+..+.+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..++.+
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 334444 789999999988555555544899999999988886554 77788999999999999988777788889999
Q ss_pred CCCcEEeccCcc-CCc-cccc---ccCCCCceEecccCCccccc-ccccccCCC-CcCeEEccCCc--C--cccchhhhc
Q 041505 94 KLLNYLTLNCCS-NLQ-RLPD---ELGNLEALWISREAGVISRW-LPENIGQLS-SLGKLDLQKNN--F--ERIPESVIQ 162 (248)
Q Consensus 94 ~~L~~L~l~~~~-~~~-~~~~---~~~~l~~L~l~~~~n~~~~~-~~~~l~~~~-~L~~L~l~~n~--l--~~lp~~l~~ 162 (248)
++|++|++++|. ..+ .++. .+++|++|+++++. .+.+. ++..++.++ +|+.|++++|. + ..+|..+..
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF-DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC-CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 999999999984 443 2443 57788999999852 44432 567788999 99999999995 4 467778889
Q ss_pred cCCcceecccCcccc-ccCCC---CCcccceeccccccccccchhhcccccccccccccccccCcchhchHHHH
Q 041505 163 LSKLGRLYLRYWERL-QSLPK---LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRSEEFL 232 (248)
Q Consensus 163 ~~~L~~L~l~~n~~~-~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~~~~~ 232 (248)
+++|++|++++|..+ ...+. ..++|++|++++|.. ..+.....+..+++|+.|++.+| +.......+
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l 291 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD--IIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL 291 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT--CCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHH
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC--CCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHH
Confidence 999999999999843 22222 248899999999863 33333455667889999999999 555444443
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=169.87 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=67.0
Q ss_pred hhhccchHhhh-hhhcCCCCccEEEccCCCCCccc-CCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcC
Q 041505 6 DDHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSL-PAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 6 ~~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
+++.+.++.++ ..++.+++|++|++++|..++.+ |..+ .+++|++|++++|.+....|..++++++|++|++++|.+
T Consensus 30 dLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l 109 (844)
T 3j0a_A 30 LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL 109 (844)
T ss_dssp EEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC
T ss_pred ECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC
Confidence 44455555553 45666666666666666545555 3444 666666666666655555555666666666666666655
Q ss_pred cCcCCcc--ccCCCCCcEEeccCccCCcccc----cccCCCCceEecc
Q 041505 83 LNSLPSG--LCKLKLLNYLTLNCCSNLQRLP----DELGNLEALWISR 124 (248)
Q Consensus 83 ~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~l~~ 124 (248)
.+..|.. +..+++|++|++++|.+.+..+ ..+++|+.|+++.
T Consensus 110 ~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred CcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 5544443 5566666666666655544322 1233444555544
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=4.1e-20 Score=159.68 Aligned_cols=174 Identities=19% Similarity=0.101 Sum_probs=106.6
Q ss_pred HhhhhhhcCCC----CccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCC
Q 041505 13 FSLYAFKQNNP----HIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLP 87 (248)
Q Consensus 13 ~~l~~~l~~l~----~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 87 (248)
..+|..+..+. +|++|++++|.+.+..|..+ .+++|++|++++|.+....| +..+++|++|++++|.+.+ +|
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~ 96 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL 96 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC
Confidence 34455554443 78888888887555555566 78888888887777654444 7888888888888875432 22
Q ss_pred ccccCCCCCcEEeccCccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcc-cchhhh-ccCC
Q 041505 88 SGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFER-IPESVI-QLSK 165 (248)
Q Consensus 88 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~-lp~~l~-~~~~ 165 (248)
..++|++|++++|.+.+..+..+++++.|++++ |.+.+..|..++.+++|+.|++++|.++. .|..+. .+++
T Consensus 97 ----~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 97 ----VGPSIETLHAANNNISRVSCSRGQGKKNIYLAN--NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp ----ECTTCCEEECCSSCCCCEEECCCSSCEEEECCS--SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ----CCCCcCEEECcCCcCCCCCccccCCCCEEECCC--CCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 226677777777666655555666666666666 45555455566666666666666666653 333443 4566
Q ss_pred cceecccCccccccCCC-CCcccceeccccc
Q 041505 166 LGRLYLRYWERLQSLPK-LPCKLHELDAHHC 195 (248)
Q Consensus 166 L~~L~l~~n~~~~~l~~-~~~~L~~L~l~~~ 195 (248)
|++|++++|.+....+. .+++|+.|+++++
T Consensus 171 L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN 201 (487)
T ss_dssp CCEEECTTSCCCEEECCCCCTTCCEEECCSS
T ss_pred ccEEecCCCccccccccccCCCCCEEECCCC
Confidence 66666666654322111 1345555555544
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=6.7e-20 Score=162.27 Aligned_cols=186 Identities=18% Similarity=0.029 Sum_probs=136.7
Q ss_pred hhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcC
Q 041505 6 DDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLN 84 (248)
Q Consensus 6 ~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 84 (248)
+.+...++.+|..+. +++++|++++|.+.+..+..+ .+++|++|++++|.+....|..+.++++|++|++++|.+.+
T Consensus 17 ~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 17 QCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp ECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred EccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc
Confidence 344556778886553 789999999988555555566 89999999998887666667778999999999999988777
Q ss_pred cCCccccCCCCCcEEeccCccCCcccccc---cCCCCceEecccCCcccc-cccccccCCCCcCeEEccCCcCcccc-hh
Q 041505 85 SLPSGLCKLKLLNYLTLNCCSNLQRLPDE---LGNLEALWISREAGVISR-WLPENIGQLSSLGKLDLQKNNFERIP-ES 159 (248)
Q Consensus 85 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~l~~L~l~~~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~lp-~~ 159 (248)
..|..++.+++|++|++++|.+.+..+.. +.+|++|++++ |.+.+ .+|..++++++|+.|++++|+++.++ ..
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH--NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCS--SCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCC--CcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence 77888999999999999998776554444 44566888888 55553 57888999999999999999987654 45
Q ss_pred hhccCCcc----eecccCccccccCCCCC--cccceeccccc
Q 041505 160 VIQLSKLG----RLYLRYWERLQSLPKLP--CKLHELDAHHC 195 (248)
Q Consensus 160 l~~~~~L~----~L~l~~n~~~~~l~~~~--~~L~~L~l~~~ 195 (248)
++.+++++ +|+++.|.+....+..+ .+|++|+++++
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 66555544 68888876543222221 35677776655
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=1.7e-20 Score=164.15 Aligned_cols=220 Identities=18% Similarity=0.086 Sum_probs=168.4
Q ss_pred hhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcC
Q 041505 6 DDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLN 84 (248)
Q Consensus 6 ~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 84 (248)
+.+.+.++.+|+.+. ++|++|++++|.+.+..|..+ .+++|++|++++|.+....|..+.++++|++|++++|.+.+
T Consensus 11 ~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (549)
T 2z81_A 11 DGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88 (549)
T ss_dssp ECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS
T ss_pred ECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc
Confidence 344567788887554 799999999998665556777 89999999998888776666789999999999999988777
Q ss_pred cCCccccCCCCCcEEeccCccCCc-cccc---ccCCCCceEecccCCccccccc-ccccCCCCcCeEEccCCcCcc-cch
Q 041505 85 SLPSGLCKLKLLNYLTLNCCSNLQ-RLPD---ELGNLEALWISREAGVISRWLP-ENIGQLSSLGKLDLQKNNFER-IPE 158 (248)
Q Consensus 85 ~~~~~l~~l~~L~~L~l~~~~~~~-~~~~---~~~~l~~L~l~~~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~-lp~ 158 (248)
..|..++.+++|++|++++|.+.+ ..|. .++++++|++++ |...+.+| ..++++++|+.|++++|.++. .|.
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~--n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN--VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE--SSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCC--CccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 666679999999999999988765 3444 455677999988 54444455 579999999999999999964 678
Q ss_pred hhhccCCcceecccCccccccCCC----CCcccceeccccccccccchh-hcccccccccccccccccCcchhchHHH
Q 041505 159 SVIQLSKLGRLYLRYWERLQSLPK----LPCKLHELDAHHCTALESLSG-LFSSFEARTRYFDLRYNYNWIEMRSEEF 231 (248)
Q Consensus 159 ~l~~~~~L~~L~l~~n~~~~~l~~----~~~~L~~L~l~~~~~l~~~~~-~~~~l~~l~~L~~l~l~~n~i~~~~~~~ 231 (248)
.+..+++|++|+++.|... .+|. .+++|++|+++++.. ...+. .......+++|+.+++.+|.+.......
T Consensus 167 ~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNL-ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp TTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBC-TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred hhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcc-ccccccccchhhhhhcccceeccccccchhHHHH
Confidence 8999999999999998642 2332 357899999998733 33211 1112234678888999999887655433
No 54
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=5.4e-20 Score=144.54 Aligned_cols=203 Identities=17% Similarity=0.214 Sum_probs=147.0
Q ss_pred hhccchHhhhhhhcCCCCccEEEccCCCCCcccCC-cc-ccCcccEEEcCCCCCccccC-hhhhcccCCCEEeccC-CcC
Q 041505 7 DHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPA-GI-HLEFLKELDLLNGTAIEELP-SAIECLYKLLHLDLEY-CES 82 (248)
Q Consensus 7 ~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~-~~~ 82 (248)
+.|..++.+|. + ..++++|++++|. +..+|. .+ .+++|++|++++|..++.++ ..+.++++|++|++++ |.+
T Consensus 18 v~c~~l~~ip~-~--~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 18 VTCKDIQRIPS-L--PPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp EEECSCSSCCC-C--CTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred eEccCccccCC-C--CCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence 44666777876 3 3589999999998 455544 66 89999999998887455665 4688999999999998 666
Q ss_pred cCcCCccccCCCCCcEEeccCccCCccccc--ccCCCC---ceEecccCC-cccccccccccCCCCcC-eEEccCCcCcc
Q 041505 83 LNSLPSGLCKLKLLNYLTLNCCSNLQRLPD--ELGNLE---ALWISREAG-VISRWLPENIGQLSSLG-KLDLQKNNFER 155 (248)
Q Consensus 83 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~l~---~L~l~~~~n-~~~~~~~~~l~~~~~L~-~L~l~~n~l~~ 155 (248)
....+..+..+++|++|++++|.+.+ +|. .+.+++ .|++++ | .+....+..++.+++|+ .+++++|+++.
T Consensus 94 ~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~--N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 94 TYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITD--NPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170 (239)
T ss_dssp CEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEEEES--CTTCCEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred eEcCHHHhCCCCCCCEEeCCCCCCcc-ccccccccccccccEEECCC--CcchhhcCcccccchhcceeEEEcCCCCCcc
Confidence 65555678899999999999977654 664 444555 777877 5 45543445688899999 99999999988
Q ss_pred cchhhhccCCcceecccCccccccCCC----CC-cccceeccccccccccchhhcccccccccccccccccC
Q 041505 156 IPESVIQLSKLGRLYLRYWERLQSLPK----LP-CKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYN 222 (248)
Q Consensus 156 lp~~l~~~~~L~~L~l~~n~~~~~l~~----~~-~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n 222 (248)
+|......++|+.|++++|+.++.++. .. ++|++|+++++ .++.++.. .+++|+.|++.++
T Consensus 171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-----GLEHLKELIARNT 236 (239)
T ss_dssp ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-----TCTTCSEEECTTC
T ss_pred cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-----HhccCceeeccCc
Confidence 876544448899999999853333332 23 67888888875 34444332 3457777777665
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=1.5e-19 Score=145.01 Aligned_cols=190 Identities=21% Similarity=0.117 Sum_probs=148.8
Q ss_pred chhhccchHhhhh-hhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcC
Q 041505 5 VDDHALELFSLYA-FKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 5 ~~~~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
++++.+.+..++. .++.+++|++|++++|.+.+..+..+ .+++|++|++++|.+....+..+.++++|++|++++|.+
T Consensus 33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 112 (276)
T 2z62_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc
Confidence 4556677888875 78899999999999998554444566 899999999988887666667799999999999999877
Q ss_pred cCcCCccccCCCCCcEEeccCccCCc-ccccc---cCCCCceEecccCCcccccccccccCCCCcC----eEEccCCcCc
Q 041505 83 LNSLPSGLCKLKLLNYLTLNCCSNLQ-RLPDE---LGNLEALWISREAGVISRWLPENIGQLSSLG----KLDLQKNNFE 154 (248)
Q Consensus 83 ~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~---~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~----~L~l~~n~l~ 154 (248)
.+..+..++.+++|++|++++|.+.+ .+|.. +++++.|++++ |.+.+..+..+..+++|+ .+++++|.++
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS--NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS--SCCCEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC--CCCCcCCHHHhhhhhhccccceeeecCCCccc
Confidence 76666678999999999999988765 35654 45677899988 666655556676666666 8999999999
Q ss_pred ccchhhhccCCcceecccCccccccCCC---CCcccceecccccc
Q 041505 155 RIPESVIQLSKLGRLYLRYWERLQSLPK---LPCKLHELDAHHCT 196 (248)
Q Consensus 155 ~lp~~l~~~~~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~~ 196 (248)
.++.......+|+.|++++|.+....+. ..++|++|++++++
T Consensus 191 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 191 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 8877666667999999999975533222 24788999998653
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=9.9e-20 Score=161.47 Aligned_cols=101 Identities=21% Similarity=0.087 Sum_probs=64.1
Q ss_pred chhhccchHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccC-hhhhcccCCCEEeccCCc
Q 041505 5 VDDHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELP-SAIECLYKLLHLDLEYCE 81 (248)
Q Consensus 5 ~~~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 81 (248)
++++.+.++.++ .+|..+++|++|++++|.+.+..+.++ .+++|++|++++|.+ ..+| .+|.++++|++|++++|.
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCEEECTTSC
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCEEECCCCc
Confidence 456667777776 357777888888888877333334445 677888888866654 3343 456777777777777765
Q ss_pred CcCcCCccccCCCCCcEEeccCccC
Q 041505 82 SLNSLPSGLCKLKLLNYLTLNCCSN 106 (248)
Q Consensus 82 ~~~~~~~~l~~l~~L~~L~l~~~~~ 106 (248)
+.+..+..++.+++|++|++++|.+
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CCCCChhhhhcCcccCeeccccCcc
Confidence 5444344456666666666665544
No 57
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=6.2e-19 Score=151.16 Aligned_cols=201 Identities=17% Similarity=0.052 Sum_probs=124.9
Q ss_pred hhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcC
Q 041505 6 DDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLN 84 (248)
Q Consensus 6 ~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 84 (248)
+++.+.+..+| .++.+++|++|++++|.+.+ +| + .+++|++|++++|.+.. ++ ++++++|++|++++|.+.+
T Consensus 48 ~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 48 DCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK 120 (457)
T ss_dssp ECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred EccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe
Confidence 34445566665 56677777777777776333 43 4 67777777776665433 33 6777777777777765544
Q ss_pred cCCccccCCCCCcEEeccCccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccC
Q 041505 85 SLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLS 164 (248)
Q Consensus 85 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~ 164 (248)
++ ++.+++|++|++++|.+.+.-...+.++++|+++. |...+.+ .++.+++|+.|++++|+++.+| +..++
T Consensus 121 -l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~--n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~ 191 (457)
T 3bz5_A 121 -LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHL--NKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNK 191 (457)
T ss_dssp -CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTT--CSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCT
T ss_pred -ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCC--CCccccc--ccccCCcCCEEECCCCccceec--cccCC
Confidence 33 66777777777777766554333555666777766 3233333 3667777778888777777766 66677
Q ss_pred CcceecccCccccccCCCCCcccceeccccccccccchhhcccccccccccccccccCcchhch
Q 041505 165 KLGRLYLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 165 ~L~~L~l~~n~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~ 228 (248)
+|+.|++++|.+...--..+++|++|+++++ .+..++ +..+++|+.+++++|.+...+
T Consensus 192 ~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N-~l~~ip-----~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 192 LLNRLNCDTNNITKLDLNQNIQLTFLDCSSN-KLTEID-----VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp TCCEEECCSSCCSCCCCTTCTTCSEEECCSS-CCSCCC-----CTTCTTCSEEECCSSCCSCCC
T ss_pred CCCEEECcCCcCCeeccccCCCCCEEECcCC-cccccC-----ccccCCCCEEEeeCCcCCCcC
Confidence 7777777777554321223466777777665 233332 345556666666666665543
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=6.2e-20 Score=161.19 Aligned_cols=102 Identities=20% Similarity=0.029 Sum_probs=51.4
Q ss_pred hhhccchHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCc
Q 041505 6 DDHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 6 ~~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
+++.+.++.++ ..++.+++|++|++++|.+.+..+..+ .+++|++|++++|......|..+.++++|++|++++|.+.
T Consensus 34 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 113 (570)
T 2z63_A 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113 (570)
T ss_dssp ECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc
Confidence 44455555554 345666666666666665333333444 5666666666555543333344555555555555554333
Q ss_pred CcCCccccCCCCCcEEeccCccCC
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNL 107 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~ 107 (248)
...+..++.+++|++|++++|.+.
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~n~l~ 137 (570)
T 2z63_A 114 SLENFPIGHLKTLKELNVAHNLIQ 137 (570)
T ss_dssp CSTTCSCTTCTTCCEEECCSSCCC
T ss_pred cCCCccccccccccEEecCCCccc
Confidence 222223444455555555544433
No 59
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=4.2e-19 Score=140.51 Aligned_cols=165 Identities=18% Similarity=0.090 Sum_probs=103.1
Q ss_pred hccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcC
Q 041505 8 HALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSL 86 (248)
Q Consensus 8 ~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 86 (248)
+.+.+..+|..+. ++++.|++++|.+.+..+..+ .+++|++|++++|.+....+..+.++++|++|++++|.+....
T Consensus 22 ~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 99 (251)
T 3m19_A 22 QGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99 (251)
T ss_dssp TTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC
Confidence 3445555655443 567777777776544444455 6777777777666655544555677777777777776655554
Q ss_pred CccccCCCCCcEEeccCccCCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-hhhc
Q 041505 87 PSGLCKLKLLNYLTLNCCSNLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-SVIQ 162 (248)
Q Consensus 87 ~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~ 162 (248)
+..+..+++|++|++++|.+.+..+. .+.+|+.|++++ |.+.+..+..++.+++|+.|++++|+++.++. .+..
T Consensus 100 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 177 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT--NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC--CcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC
Confidence 55566777777777777655533332 234555666666 44554334456677777777777777765553 5666
Q ss_pred cCCcceecccCccc
Q 041505 163 LSKLGRLYLRYWER 176 (248)
Q Consensus 163 ~~~L~~L~l~~n~~ 176 (248)
+++|++|++++|++
T Consensus 178 l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 178 LGKLQTITLFGNQF 191 (251)
T ss_dssp CTTCCEEECCSCCB
T ss_pred CCCCCEEEeeCCce
Confidence 67777777777654
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=1.2e-18 Score=156.29 Aligned_cols=179 Identities=24% Similarity=0.198 Sum_probs=93.1
Q ss_pred cChhhhcccCCCEEeccCCcCcCcCC-ccccCCCCCcEEeccCccCCcc--------------------------ccccc
Q 041505 62 LPSAIECLYKLLHLDLEYCESLNSLP-SGLCKLKLLNYLTLNCCSNLQR--------------------------LPDEL 114 (248)
Q Consensus 62 ~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~--------------------------~~~~~ 114 (248)
.|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+.+. .|..+
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 34455566666666666655554443 3455556666666655543322 23222
Q ss_pred ---CCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch---------hhhccCCcceecccCccccccCCC
Q 041505 115 ---GNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE---------SVIQLSKLGRLYLRYWERLQSLPK 182 (248)
Q Consensus 115 ---~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~---------~l~~~~~L~~L~l~~n~~~~~l~~ 182 (248)
.+++.|++++ |.+.+..+..++.+++|+.|++++|.++.++. .+.++++|++|++++|.+. .+|.
T Consensus 477 ~~l~~L~~L~Ls~--N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~ 553 (680)
T 1ziw_A 477 QPLRNLTILDLSN--NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPV 553 (680)
T ss_dssp TTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred ccCCCCCEEECCC--CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCH
Confidence 2333445544 33443333445555555555555555543311 2445556666666655433 3332
Q ss_pred ----CCcccceeccccccccccchhhcccccccccccccccccCcchhchHHHHHHHHhhhhheeccc
Q 041505 183 ----LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRSEEFLKMLCKKLNFWQLHY 246 (248)
Q Consensus 183 ----~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~~~~~~~l~~~l~~~~~~~ 246 (248)
.+++|++|+++++ .++.++. ..+..+++|+.+++++|.+...++..+...++.++...+..
T Consensus 554 ~~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLN-NLNTLPA--SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred HHcccccCcceeECCCC-CCCcCCH--hHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence 2355666666554 3333322 22335668888888888888777666553334555555443
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.7e-18 Score=138.39 Aligned_cols=187 Identities=21% Similarity=0.128 Sum_probs=144.9
Q ss_pred chhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccC-hhhhcccCCCEEeccCCcC
Q 041505 5 VDDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELP-SAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 5 ~~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 82 (248)
++.+.+.++.+|..+. +++++|++++|.+.+..+..+ .+++|++|++++|.+. .+| ..+.++++|++|++++|.+
T Consensus 21 l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 21 VDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCC
T ss_pred EEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcC
Confidence 3445566777776543 689999999998544444466 8999999999777654 555 4568899999999999876
Q ss_pred cCcCCccccCCCCCcEEeccCccCCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-
Q 041505 83 LNSLPSGLCKLKLLNYLTLNCCSNLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE- 158 (248)
Q Consensus 83 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~- 158 (248)
....+..+..+++|++|++++|.+.+..+. .+++|+.|++++ |.+.+..+..++.+++|+.|++++|.++.++.
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY--NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC--CcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 665556678899999999999887765554 456778999998 66665445568999999999999999988875
Q ss_pred hhhccCCcceecccCccccccCCC---CCcccceecccccc
Q 041505 159 SVIQLSKLGRLYLRYWERLQSLPK---LPCKLHELDAHHCT 196 (248)
Q Consensus 159 ~l~~~~~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~~ 196 (248)
.+..+++|++|++++|.+....+. .+++|+.|++++++
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 588899999999999976533222 24789999998864
No 62
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=4e-19 Score=142.26 Aligned_cols=173 Identities=20% Similarity=0.114 Sum_probs=122.3
Q ss_pred hcCCCCccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcE
Q 041505 19 KQNNPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNY 98 (248)
Q Consensus 19 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 98 (248)
+..+++|+.|++++|. +..++....+++|++|++++|.+.. + ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 4456788888888876 5555432278888888887766543 3 35778888888888887766555566778888888
Q ss_pred EeccCccCCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-hhhccCCcceecccCc
Q 041505 99 LTLNCCSNLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLYLRYW 174 (248)
Q Consensus 99 L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~l~~n 174 (248)
|++++|.+.+..+. .+++|+.|++++ |.+.+..+..++.+++|+.|++++|+++.++. .+..+++|++|++++|
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAH--NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCC--CccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 88888776655443 345666788877 55655445557888888888888888876654 4577888888888888
Q ss_pred cccccCCC---CCcccceecccccc
Q 041505 175 ERLQSLPK---LPCKLHELDAHHCT 196 (248)
Q Consensus 175 ~~~~~l~~---~~~~L~~L~l~~~~ 196 (248)
.+....+. .+++|+.|++++++
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHHHHhCCcCCCEEEccCCC
Confidence 76544433 24678888877763
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=3.8e-19 Score=152.46 Aligned_cols=92 Identities=18% Similarity=0.131 Sum_probs=51.2
Q ss_pred hhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcC
Q 041505 6 DDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLN 84 (248)
Q Consensus 6 ~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 84 (248)
+++.+.+..++ ++.+++|++|++++|.+.+ ++ + .+++|++|++++|.+.. ++ ++.+++|++|++++|...+
T Consensus 91 ~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 91 ACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKIT 162 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCC
T ss_pred ECcCCCCceee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccc
Confidence 34445555553 6667777777777776333 43 4 66677777775555433 33 5555666666666554444
Q ss_pred cCCccccCCCCCcEEeccCccCC
Q 041505 85 SLPSGLCKLKLLNYLTLNCCSNL 107 (248)
Q Consensus 85 ~~~~~l~~l~~L~~L~l~~~~~~ 107 (248)
.+ .++.+++|++|++++|.+.
T Consensus 163 ~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 163 KL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CC--CCTTCTTCCEEECCSSCCC
T ss_pred cc--ccccCCcCCEEECCCCccc
Confidence 43 2444555555555554443
No 64
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.81 E-value=1.2e-18 Score=143.94 Aligned_cols=223 Identities=17% Similarity=0.155 Sum_probs=138.8
Q ss_pred hccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCc-
Q 041505 8 HALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNS- 85 (248)
Q Consensus 8 ~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~- 85 (248)
+.+.+..++ .+..+++|++|++++|. +..++. + .+++|++|++++|.....++. +..+++|++|++++|.....
T Consensus 96 ~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 96 GTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp CSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred cCCcccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCch
Confidence 344555554 46677777777777776 333333 4 666666666665544443332 45555555555554433221
Q ss_pred --------------------CCccccCCCCCcEEeccCccCCccc-ccccCCCCceEecccCCcccccccccccCCCCcC
Q 041505 86 --------------------LPSGLCKLKLLNYLTLNCCSNLQRL-PDELGNLEALWISREAGVISRWLPENIGQLSSLG 144 (248)
Q Consensus 86 --------------------~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~ 144 (248)
++. +..+++|+++++++|...+.. ...++++++|++++ |.+.+ ++. +..+++|+
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~--n~l~~-~~~-~~~l~~L~ 246 (347)
T 4fmz_A 172 PIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGN--NKITD-LSP-LANLSQLT 246 (347)
T ss_dssp GGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS--SCCCC-CGG-GTTCTTCC
T ss_pred hhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccC--CccCC-Ccc-hhcCCCCC
Confidence 221 344445555555554433222 23456777888888 44553 333 88999999
Q ss_pred eEEccCCcCcccchhhhccCCcceecccCccccccCCC--CCcccceeccccccccccchhhcccccccccccccccccC
Q 041505 145 KLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPK--LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYN 222 (248)
Q Consensus 145 ~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n 222 (248)
.|++++|.++.++ .+..+++|++|++++|.+.. ++. .+++|++|++++|......+ ..+..+++|+.+++++|
T Consensus 247 ~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 247 WLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDM---EVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp EEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCGGGH---HHHHTCTTCSEEECCSS
T ss_pred EEECCCCccCCCh-hHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcCCCcCh---hHhhccccCCEEEccCC
Confidence 9999999998874 57889999999999996543 342 35889999999885433332 33446679999999999
Q ss_pred cchhchHHHHHHHHhhhhheecccC
Q 041505 223 WIEMRSEEFLKMLCKKLNFWQLHYG 247 (248)
Q Consensus 223 ~i~~~~~~~~~~l~~~l~~~~~~~~ 247 (248)
.+....+ +.. ++.|+...+.++
T Consensus 322 ~l~~~~~--~~~-l~~L~~L~l~~N 343 (347)
T 4fmz_A 322 HITDIRP--LAS-LSKMDSADFANQ 343 (347)
T ss_dssp SCCCCGG--GGG-CTTCSEESSSCC
T ss_pred ccccccC--hhh-hhccceeehhhh
Confidence 9887654 221 456666665554
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=2e-18 Score=139.44 Aligned_cols=195 Identities=19% Similarity=0.119 Sum_probs=104.0
Q ss_pred hcCCCCccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcE
Q 041505 19 KQNNPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNY 98 (248)
Q Consensus 19 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 98 (248)
+..+++++.++++++. +..+|..+. +.+++|++++|.+....+..+.++++|++|++++|.+.+ ++.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCC-CCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCE
Confidence 3445566666666654 444554332 456666665555544444556666666666666654332 2221 45566666
Q ss_pred EeccCccCCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-hhhccCCcceecccCc
Q 041505 99 LTLNCCSNLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLYLRYW 174 (248)
Q Consensus 99 L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~l~~n 174 (248)
|++++|.+. .+|. .+++++.|++++ |.+.+..+..++.+++|+.|++++|+++.+|. .+..+++|+.|++++|
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~--N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSF--NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCS--SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCC--CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 666665443 3443 233455566655 44444334456666666666666666655543 3455666666666666
Q ss_pred cccccCCC----CCcccceeccccccccccchhhcccccccccccccccccCcch
Q 041505 175 ERLQSLPK----LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIE 225 (248)
Q Consensus 175 ~~~~~l~~----~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~ 225 (248)
.+. .+|. .+++|++|+++++ .++.++.... ..+.|+.+++.+|.+.
T Consensus 159 ~l~-~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~---~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLT-ELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF---GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCS-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT---TTCCCSEEECCSCCBC
T ss_pred cCC-ccCHHHhcCcCCCCEEECCCC-cCCccChhhc---ccccCCeEEeCCCCcc
Confidence 543 2332 2355666666654 3344433332 2335666666666554
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=1.6e-18 Score=138.77 Aligned_cols=178 Identities=20% Similarity=0.118 Sum_probs=121.4
Q ss_pred ccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCC
Q 041505 9 ALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLP 87 (248)
Q Consensus 9 ~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 87 (248)
.+.+..++ .++.+++|++|++++|.+. .++ .+ .+++|++|++++|.+....+..+.++++|++|++++|.+.+..+
T Consensus 50 ~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 126 (272)
T 3rfs_A 50 NSDIKSVQ-GIQYLPNVRYLALGGNKLH-DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126 (272)
T ss_dssp TSCCCCCT-TGGGCTTCCEEECTTSCCC-CCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCCccccc-ccccCCCCcEEECCCCCCC-Cch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH
Confidence 34445443 4677888888888888743 333 44 78888888887776554444556788888888888877665555
Q ss_pred ccccCCCCCcEEeccCccCCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-hhhcc
Q 041505 88 SGLCKLKLLNYLTLNCCSNLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-SVIQL 163 (248)
Q Consensus 88 ~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~~ 163 (248)
..+..+++|++|++++|.+.+..+. .+++|+.|++++ |.+.+..+..++.+++|+.|++++|+++.++. .+..+
T Consensus 127 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 204 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY--NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC--CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCC
Confidence 5577788888888888766644443 345666778877 55655445557788888888888888876654 46778
Q ss_pred CCcceecccCccccccCCCCCcccceeccccc
Q 041505 164 SKLGRLYLRYWERLQSLPKLPCKLHELDAHHC 195 (248)
Q Consensus 164 ~~L~~L~l~~n~~~~~l~~~~~~L~~L~l~~~ 195 (248)
++|++|++++|++... ++.|+.+++..+
T Consensus 205 ~~L~~L~l~~N~~~~~----~~~l~~l~~~~n 232 (272)
T 3rfs_A 205 TSLQYIWLHDNPWDCT----CPGIRYLSEWIN 232 (272)
T ss_dssp TTCCEEECCSSCBCCC----TTTTHHHHHHHH
T ss_pred cCCCEEEccCCCcccc----CcHHHHHHHHHH
Confidence 8888888888854432 345666665544
No 67
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=2.2e-20 Score=156.82 Aligned_cols=96 Identities=19% Similarity=0.064 Sum_probs=46.5
Q ss_pred chHhhhhhhcCCCCccEEEccCCCCCcc----cCCcc-ccCcccEEEcCCCC---CccccChhh-------hcccCCCEE
Q 041505 11 ELFSLYAFKQNNPHIVVLNLRDCKSLKS----LPAGI-HLEFLKELDLLNGT---AIEELPSAI-------ECLYKLLHL 75 (248)
Q Consensus 11 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~----~~~~~-~l~~L~~L~l~~~~---~~~~~~~~~-------~~l~~L~~L 75 (248)
.+..++..+..+++|++|++++|.+... ++..+ .+++|++|++++|. ....+|..+ ..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 3444555555555666666666553332 22223 45556666655432 111223222 455555555
Q ss_pred eccCCcCcC----cCCccccCCCCCcEEeccCccC
Q 041505 76 DLEYCESLN----SLPSGLCKLKLLNYLTLNCCSN 106 (248)
Q Consensus 76 ~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~ 106 (248)
++++|.+.. .+|..+..+++|++|++++|.+
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 555554443 2344455555555555555544
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=1.6e-19 Score=147.46 Aligned_cols=184 Identities=21% Similarity=0.179 Sum_probs=144.1
Q ss_pred hhhccchH-hhhhhh--cCCCCccEEEccCCCCCcccCCcc-cc-----CcccEEEcCCCCCccccChhhhcccCCCEEe
Q 041505 6 DDHALELF-SLYAFK--QNNPHIVVLNLRDCKSLKSLPAGI-HL-----EFLKELDLLNGTAIEELPSAIECLYKLLHLD 76 (248)
Q Consensus 6 ~~~~~~l~-~l~~~l--~~l~~L~~L~l~~~~~~~~~~~~~-~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 76 (248)
+++.+.+. .+|..+ +.+++|++|++++|.+.+. |..+ .+ ++|++|++++|.+....|..++++++|++|+
T Consensus 101 ~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 179 (312)
T 1wwl_A 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179 (312)
T ss_dssp EEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE
T ss_pred EccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE
Confidence 34455565 466655 7899999999999985555 7766 66 8999999988887666668899999999999
Q ss_pred ccCCcCcCc--CCccc--cCCCCCcEEeccCccCCc--cccc----ccCCCCceEecccCCccccccc-ccccCCCCcCe
Q 041505 77 LEYCESLNS--LPSGL--CKLKLLNYLTLNCCSNLQ--RLPD----ELGNLEALWISREAGVISRWLP-ENIGQLSSLGK 145 (248)
Q Consensus 77 l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~--~~~~----~~~~l~~L~l~~~~n~~~~~~~-~~l~~~~~L~~ 145 (248)
+++|.+.+. .+..+ +.+++|++|++++|.+.+ .++. .+++++.|++++ |.+.+..| ..+..+++|+.
T Consensus 180 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH--NSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT--SCCCSSCCCSCCCCCTTCCE
T ss_pred CCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC--CcCCcccchhhhhhcCCCCE
Confidence 999876654 34444 789999999999987763 2332 447899999999 66776554 45677899999
Q ss_pred EEccCCcCcccchhhhccCCcceecccCccccccCCC--CCcccceeccccc
Q 041505 146 LDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPK--LPCKLHELDAHHC 195 (248)
Q Consensus 146 L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~--~~~~L~~L~l~~~ 195 (248)
|++++|.++.+|..+. ++|++|++++|.+.. +|. .+++|++|+++++
T Consensus 258 L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~-~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 258 LNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDR-NPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp EECTTSCCSSCCSSCC--SEEEEEECCSSCCCS-CCCTTTSCEEEEEECTTC
T ss_pred EECCCCccChhhhhcc--CCceEEECCCCCCCC-ChhHhhCCCCCEEeccCC
Confidence 9999999999998765 899999999997643 354 3477888888776
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=8.2e-19 Score=137.75 Aligned_cols=187 Identities=18% Similarity=0.092 Sum_probs=142.1
Q ss_pred chhhccchHhhhh-hhcCCCCccEEEccCCCCCcccCC-cc-ccCcccEEEcCCCCCccccC-hhhhcccCCCEEeccCC
Q 041505 5 VDDHALELFSLYA-FKQNNPHIVVLNLRDCKSLKSLPA-GI-HLEFLKELDLLNGTAIEELP-SAIECLYKLLHLDLEYC 80 (248)
Q Consensus 5 ~~~~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~ 80 (248)
++++.+.++.+++ .++.+++|++|++++|..++.++. .+ .+++|++|++++|+.+..++ ..+.++++|++|++++|
T Consensus 36 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115 (239)
T ss_dssp EEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE
T ss_pred EEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC
Confidence 4556777888885 688999999999999964555655 56 89999999998734445555 56889999999999997
Q ss_pred cCcCcCCccccCCCCCc---EEeccCc-cCCcccccc---cCCCC-ceEecccCCcccccccccccCCCCcCeEEccCCc
Q 041505 81 ESLNSLPSGLCKLKLLN---YLTLNCC-SNLQRLPDE---LGNLE-ALWISREAGVISRWLPENIGQLSSLGKLDLQKNN 152 (248)
Q Consensus 81 ~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~---~~~l~-~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 152 (248)
.+.+ +|. +..+++|+ +|++++| .+.+..+.. +.+++ .|++++ |.+. .+|......++|+.|++++|+
T Consensus 116 ~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~--n~l~-~i~~~~~~~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 116 GLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN--NGFT-SVQGYAFNGTKLDAVYLNKNK 190 (239)
T ss_dssp CCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS--CCCC-EECTTTTTTCEEEEEECTTCT
T ss_pred CCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC--CCCc-ccCHhhcCCCCCCEEEcCCCC
Confidence 6554 776 88888888 9999998 544333333 44566 788877 5555 466554344899999999995
Q ss_pred -Ccccc-hhhhcc-CCcceecccCccccccCC-CCCcccceeccccccc
Q 041505 153 -FERIP-ESVIQL-SKLGRLYLRYWERLQSLP-KLPCKLHELDAHHCTA 197 (248)
Q Consensus 153 -l~~lp-~~l~~~-~~L~~L~l~~n~~~~~l~-~~~~~L~~L~l~~~~~ 197 (248)
++.+| ..+..+ ++|+.|++++|.+. .+| ..+++|+.|++.++..
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCTTCTTCSEEECTTC--
T ss_pred CcccCCHHHhhccccCCcEEECCCCccc-cCChhHhccCceeeccCccC
Confidence 98886 467888 99999999999765 444 4578999999887653
No 70
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=1.2e-19 Score=151.08 Aligned_cols=209 Identities=13% Similarity=0.062 Sum_probs=98.8
Q ss_pred hhcCCC-CccEEEccCCCCCcccCCcc-cc-----CcccEEEcCCCCCccccChhhh----cc-cCCCEEeccCCcCcCc
Q 041505 18 FKQNNP-HIVVLNLRDCKSLKSLPAGI-HL-----EFLKELDLLNGTAIEELPSAIE----CL-YKLLHLDLEYCESLNS 85 (248)
Q Consensus 18 ~l~~l~-~L~~L~l~~~~~~~~~~~~~-~l-----~~L~~L~l~~~~~~~~~~~~~~----~l-~~L~~L~l~~~~~~~~ 85 (248)
.+..++ +|++|++++|.+.+..+..+ .+ +.|++|++++|.+....+..+. .+ ++|++|++++|.+...
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 344454 55555555554333222222 22 5555555555544333333222 22 5556666655544333
Q ss_pred CCccc----cC-CCCCcEEeccCccCCccccc-------cc-CCCCceEecccCCcccccccc----cccCC-CCcCeEE
Q 041505 86 LPSGL----CK-LKLLNYLTLNCCSNLQRLPD-------EL-GNLEALWISREAGVISRWLPE----NIGQL-SSLGKLD 147 (248)
Q Consensus 86 ~~~~l----~~-l~~L~~L~l~~~~~~~~~~~-------~~-~~l~~L~l~~~~n~~~~~~~~----~l~~~-~~L~~L~ 147 (248)
.+..+ .. .++|++|++++|.+....+. .. .++++|++++ |.+.+..+. .+..+ ++|+.|+
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~--n~l~~~~~~~l~~~l~~~~~~L~~L~ 202 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG--NNLASKNCAELAKFLASIPASVTSLD 202 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT--SCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC--CCCchhhHHHHHHHHHhCCCCCCEEE
Confidence 32222 22 13566666666554422211 11 2555666665 334333322 23333 3666666
Q ss_pred ccCCcCcc-----cchhhhc-cCCcceecccCccccccCC-------CCCcccceeccccccc--cc--cchhhcccccc
Q 041505 148 LQKNNFER-----IPESVIQ-LSKLGRLYLRYWERLQSLP-------KLPCKLHELDAHHCTA--LE--SLSGLFSSFEA 210 (248)
Q Consensus 148 l~~n~l~~-----lp~~l~~-~~~L~~L~l~~n~~~~~l~-------~~~~~L~~L~l~~~~~--l~--~~~~~~~~l~~ 210 (248)
+++|.++. ++..+.. .++|++|++++|.+...-+ ...++|++|++++|.. +. .+......+..
T Consensus 203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~ 282 (362)
T 3goz_A 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT
T ss_pred CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc
Confidence 66666644 4444444 3466666666665432111 2235566666666530 00 01111223345
Q ss_pred cccccccccccCcchhch
Q 041505 211 RTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 211 l~~L~~l~l~~n~i~~~~ 228 (248)
+++|+.+++++|.+....
T Consensus 283 l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 283 IQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp CCEEEEECTTSCBCCGGG
T ss_pred CCceEEEecCCCcCCCcc
Confidence 667777888888776654
No 71
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=7.3e-19 Score=154.37 Aligned_cols=200 Identities=22% Similarity=0.142 Sum_probs=147.7
Q ss_pred CCCccEEEccCCCCCcccCCccccCcccEEEcCCCCCcccc--ChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEE
Q 041505 22 NPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEEL--PSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYL 99 (248)
Q Consensus 22 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 99 (248)
+++|++|++++|...+..+. ..+++|++|++++|...... |..+.++++|++|++++|.+.+ .+..+..+++|++|
T Consensus 324 l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L 401 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred ccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEE
Confidence 34444444444442222221 36788888999777655432 6778899999999999876554 44448889999999
Q ss_pred eccCccCCcccc----cccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCc--ccchhhhccCCcceecccC
Q 041505 100 TLNCCSNLQRLP----DELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFE--RIPESVIQLSKLGRLYLRY 173 (248)
Q Consensus 100 ~l~~~~~~~~~~----~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~--~lp~~l~~~~~L~~L~l~~ 173 (248)
++++|...+..| ..++++++|++++ |...+..|..++.+++|+.|++++|.++ .+|..+..+++|++|++++
T Consensus 402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISH--THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp ECTTSEEESCTTSCTTTTCTTCCEEECTT--SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EccCCccccccchhhhhcCCCCCEEeCcC--CcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence 999987766544 3456778999988 5666667888999999999999999985 5888899999999999999
Q ss_pred ccccccCCCC---CcccceeccccccccccchhhcccccccccccccccccCcchhch
Q 041505 174 WERLQSLPKL---PCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 174 n~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~ 228 (248)
|.+....|.. +++|++|++++|. +...+ ...+..+++|+.+++.+|.+....
T Consensus 480 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 480 CQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVP--DGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSC-CSCCC--TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CccccCChhhhhcccCCCEEeCCCCc-CCCCC--HHHhhcccCCcEEEecCCcccCCC
Confidence 9876655543 4789999999873 34332 233456779999999999987653
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=146.70 Aligned_cols=185 Identities=16% Similarity=0.104 Sum_probs=143.0
Q ss_pred hccchH-hhhhhh--cCCCCccEEEccCCCCCcccCC----cc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccC
Q 041505 8 HALELF-SLYAFK--QNNPHIVVLNLRDCKSLKSLPA----GI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEY 79 (248)
Q Consensus 8 ~~~~l~-~l~~~l--~~l~~L~~L~l~~~~~~~~~~~----~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 79 (248)
+.+.+. ..|..+ +.+++|++|++++|.+.+..+. .+ .+++|++|++++|.+....|..+.++++|++|++++
T Consensus 99 ~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 178 (310)
T 4glp_A 99 EDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSD 178 (310)
T ss_dssp ESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCS
T ss_pred eCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCC
Confidence 344444 344555 7899999999999986664442 22 689999999988887666667889999999999999
Q ss_pred CcCcCc--C--CccccCCCCCcEEeccCccCCc--cc----ccccCCCCceEecccCCcccccccccccCC---CCcCeE
Q 041505 80 CESLNS--L--PSGLCKLKLLNYLTLNCCSNLQ--RL----PDELGNLEALWISREAGVISRWLPENIGQL---SSLGKL 146 (248)
Q Consensus 80 ~~~~~~--~--~~~l~~l~~L~~L~l~~~~~~~--~~----~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~---~~L~~L 146 (248)
|.+.+. + +..++.+++|++|++++|.+.. .. ...+++|++|++++ |.+.+..|..++.+ ++|+.|
T Consensus 179 N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~--N~l~~~~p~~~~~~~~~~~L~~L 256 (310)
T 4glp_A 179 NPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH--NSLRATVNPSAPRCMWSSALNSL 256 (310)
T ss_dssp CTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT--SCCCCCCCSCCSSCCCCTTCCCE
T ss_pred CCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC--CCCCccchhhHHhccCcCcCCEE
Confidence 876542 2 2334688999999999987752 11 12458899999999 77877667777777 699999
Q ss_pred EccCCcCcccchhhhccCCcceecccCccccc-cCCCCCcccceecccccc
Q 041505 147 DLQKNNFERIPESVIQLSKLGRLYLRYWERLQ-SLPKLPCKLHELDAHHCT 196 (248)
Q Consensus 147 ~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~-~l~~~~~~L~~L~l~~~~ 196 (248)
++++|+++.+|..+. ++|++|++++|.+.. ..+..+++|+.|++++++
T Consensus 257 ~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 257 NLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred ECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence 999999999988663 899999999998765 345566889999988763
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=2.7e-18 Score=139.86 Aligned_cols=191 Identities=17% Similarity=0.235 Sum_probs=138.1
Q ss_pred cCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcE
Q 041505 20 QNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNY 98 (248)
Q Consensus 20 ~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 98 (248)
..+++|++|++++|. +..++ .+ .+++|++|++++|.+ ..++. +..+++|++|++++|.+. .++ .+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCcC-CCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCE
Confidence 446788889998886 55565 45 788899999976654 44555 888889999999887644 343 5788888999
Q ss_pred EeccCccCCcccc--cccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCccc
Q 041505 99 LTLNCCSNLQRLP--DELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWER 176 (248)
Q Consensus 99 L~l~~~~~~~~~~--~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~ 176 (248)
|++++|.+.+ ++ ..+++|++|++++ |.+.+ ++. ++.+++|+.|++++|.++.++. +..+++|++|++++|.+
T Consensus 112 L~l~~n~l~~-~~~l~~l~~L~~L~l~~--n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITD-VTPLAGLSNLQVLYLDL--NQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCC-CGGGTTCTTCCEEECCS--SCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCC-chhhcCCCCCCEEECCC--CccCc-Ccc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence 9998877654 33 2455677888887 55553 333 7888889999999888887766 77888899999988865
Q ss_pred cccCCC--CCcccceeccccccccccchhhcccccccccccccccccCcchhch
Q 041505 177 LQSLPK--LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 177 ~~~l~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~ 228 (248)
. .++. .+++|++|++++| .+...+ .+..+++|+.+++++|.+...+
T Consensus 186 ~-~~~~l~~l~~L~~L~L~~N-~l~~~~----~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 186 S-DISPLASLPNLIEVHLKNN-QISDVS----PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp C-CCGGGGGCTTCCEEECTTS-CCCBCG----GGTTCTTCCEEEEEEEEEECCC
T ss_pred C-cChhhcCCCCCCEEEccCC-ccCccc----cccCCCCCCEEEccCCeeecCC
Confidence 3 3332 3478888888887 334333 2567778888888888886644
No 74
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=2.4e-18 Score=147.35 Aligned_cols=156 Identities=25% Similarity=0.305 Sum_probs=108.2
Q ss_pred CCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEec
Q 041505 23 PHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTL 101 (248)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 101 (248)
++|++|++++|.+. .+| .+ .+++|++|++++|.+. .+|.. .++|++|++++|.+.+ +| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcCc-ccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 46777777777633 466 35 7777777777666543 35543 2477778887765544 55 5788888888888
Q ss_pred cCccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCccccccCC
Q 041505 102 NCCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLP 181 (248)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~ 181 (248)
++|.+.+ +|...++++.|++++ |... .+| .++.+++|+.|++++|+++.+|.. .++|++|++++|.+. .+|
T Consensus 203 ~~N~l~~-l~~~~~~L~~L~l~~--n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~-~l~ 273 (454)
T 1jl5_A 203 DNNSLKK-LPDLPLSLESIVAGN--NILE-ELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLT-DLP 273 (454)
T ss_dssp CSSCCSS-CCCCCTTCCEEECCS--SCCS-SCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCS-CCC
T ss_pred CCCcCCc-CCCCcCcccEEECcC--CcCC-ccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCccc-ccC
Confidence 8876654 666667888888888 4454 466 488888999999999988877753 367777777777543 356
Q ss_pred CCCcccceeccccc
Q 041505 182 KLPCKLHELDAHHC 195 (248)
Q Consensus 182 ~~~~~L~~L~l~~~ 195 (248)
..+++|++|+++++
T Consensus 274 ~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 274 ELPQSLTFLDVSEN 287 (454)
T ss_dssp CCCTTCCEEECCSS
T ss_pred cccCcCCEEECcCC
Confidence 55666777776665
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=9.6e-19 Score=143.10 Aligned_cols=207 Identities=17% Similarity=0.065 Sum_probs=149.7
Q ss_pred chhhccchHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccCh-----------------h
Q 041505 5 VDDHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPS-----------------A 65 (248)
Q Consensus 5 ~~~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~-----------------~ 65 (248)
++++.+.+..++ ..++.+++|++|++++|.+.+..+ + .+++|++|++++|.+.. ++. .
T Consensus 39 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~~~~~L~~L~l~~n~l~~~~ 115 (317)
T 3o53_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANNNISRVS 115 (317)
T ss_dssp EECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EEECTTCCEEECCSSCCSEEE
T ss_pred EECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-ccCCCCcCEEECCCCccCCcC
Confidence 345566777776 578899999999999998544433 5 88889999987765432 110 0
Q ss_pred hhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCccccc----ccCCCCceEecccCCcccccccccccCCC
Q 041505 66 IECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPD----ELGNLEALWISREAGVISRWLPENIGQLS 141 (248)
Q Consensus 66 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~l~~~~n~~~~~~~~~l~~~~ 141 (248)
...+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+. .+.+++.|++++ |.+.+ ++ ....++
T Consensus 116 ~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~--N~l~~-~~-~~~~l~ 191 (317)
T 3o53_A 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY--NFIYD-VK-GQVVFA 191 (317)
T ss_dssp ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT--SCCCE-EE-CCCCCT
T ss_pred ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC--CcCcc-cc-cccccc
Confidence 12356788888888776666666788889999999999887765544 346788999988 55553 33 344589
Q ss_pred CcCeEEccCCcCcccchhhhccCCcceecccCccccccCCCC---Ccccceecccccccc-ccchhhccccccccccccc
Q 041505 142 SLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPKL---PCKLHELDAHHCTAL-ESLSGLFSSFEARTRYFDL 217 (248)
Q Consensus 142 ~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~~~l-~~~~~~~~~l~~l~~L~~l 217 (248)
+|+.|++++|.++.+|..+..+++|++|++++|.+. .+|.. +++|+.|++++++-. ...+ ..+..+++|+.+
T Consensus 192 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~---~~~~~~~~L~~l 267 (317)
T 3o53_A 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTV 267 (317)
T ss_dssp TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH---HHHHTCHHHHHH
T ss_pred cCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH---HHHhccccceEE
Confidence 999999999999999888999999999999999765 45543 478999999987543 2222 233355677777
Q ss_pred ccccC
Q 041505 218 RYNYN 222 (248)
Q Consensus 218 ~l~~n 222 (248)
++..+
T Consensus 268 ~l~~~ 272 (317)
T 3o53_A 268 AKQTV 272 (317)
T ss_dssp HHHHH
T ss_pred ECCCc
Confidence 77633
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=6.2e-19 Score=152.31 Aligned_cols=204 Identities=16% Similarity=0.036 Sum_probs=156.2
Q ss_pred chhhccchHhhh-hhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcC
Q 041505 5 VDDHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 5 ~~~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
++++.+.+..++ ..++.+++|++|++++|.+.+..| + .+++|++|++++|.+ ..+| ..++|++|++++|.+
T Consensus 39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l-~~l~----~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-QELL----VGPSIETLHAANNNI 111 (487)
T ss_dssp EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEE-EEEE----ECTTCCEEECCSSCC
T ss_pred EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcC-CCCC----CCCCcCEEECcCCcC
Confidence 445566777776 679999999999999998555544 6 899999999977764 3444 338999999999876
Q ss_pred cCcCCccccCCCCCcEEeccCccCCccccccc---CCCCceEecccCCccccccccccc-CCCCcCeEEccCCcCcccch
Q 041505 83 LNSLPSGLCKLKLLNYLTLNCCSNLQRLPDEL---GNLEALWISREAGVISRWLPENIG-QLSSLGKLDLQKNNFERIPE 158 (248)
Q Consensus 83 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~l~~~~n~~~~~~~~~l~-~~~~L~~L~l~~n~l~~lp~ 158 (248)
.+..+. .+++|+.|++++|.+.+..|..+ ++|+.|++++ |.+.+..|..+. .+++|+.|++++|.++.+|.
T Consensus 112 ~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 112 SRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL--NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp CCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT--SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC--CCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 655443 46889999999988887766544 5666888888 677776777765 78999999999999987765
Q ss_pred hhhccCCcceecccCccccccCCC--CCcccceeccccccccccchhhcccccccccccccccccCcch
Q 041505 159 SVIQLSKLGRLYLRYWERLQSLPK--LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIE 225 (248)
Q Consensus 159 ~l~~~~~L~~L~l~~n~~~~~l~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~ 225 (248)
. ..+++|++|++++|.+....+. .+++|+.|+++++ .+..++.. +..+++|+.+++++|.+.
T Consensus 187 ~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 187 Q-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA---LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp C-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTT---CCCCTTCCEEECTTCCBC
T ss_pred c-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC-cCcccchh---hccCCCCCEEEcCCCCCc
Confidence 3 3689999999999976543332 2478999999987 44555443 445679999999999987
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=1.5e-17 Score=131.53 Aligned_cols=169 Identities=20% Similarity=0.183 Sum_probs=131.6
Q ss_pred CCccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEecc
Q 041505 23 PHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLN 102 (248)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 102 (248)
...+.++++++. +..+|..+. +.+++|++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCC-ccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356789999986 777877663 589999998888776666779999999999999988887777778999999999999
Q ss_pred CccCCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-hhhccCCcceecccCccccc
Q 041505 103 CCSNLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLYLRYWERLQ 178 (248)
Q Consensus 103 ~~~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~l~~n~~~~ 178 (248)
+|.+.+..+. .+.+|+.|++++ |.+.+..+..++.+++|+.|++++|+++.+|. .+..+++|++|++++|.+..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGG--NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcccccChhHhcccCCCCEEEcCC--CcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 9877654444 345677888888 66665444557888999999999999988775 67888999999999987654
Q ss_pred cCCC---CCcccceeccccc
Q 041505 179 SLPK---LPCKLHELDAHHC 195 (248)
Q Consensus 179 ~l~~---~~~~L~~L~l~~~ 195 (248)
..+. .+++|++|+++++
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSC
T ss_pred cCHHHHhCCCCCCEEEeeCC
Confidence 3332 2366777777765
No 78
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.77 E-value=7.3e-18 Score=144.86 Aligned_cols=194 Identities=23% Similarity=0.215 Sum_probs=119.3
Q ss_pred hcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCc
Q 041505 19 KQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLN 97 (248)
Q Consensus 19 l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 97 (248)
++.+++|++|++++|. +..++. + .+++|++|++++|......| ++.+++|++|++++|.+.+ + ..+..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 246 (466)
T 1o6v_A 173 LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLT 246 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCS
T ss_pred hccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCC
Confidence 5566777777777776 333332 4 67777777776665443322 5667777777777765433 2 3466677777
Q ss_pred EEeccCccCCcccc-cccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCccc
Q 041505 98 YLTLNCCSNLQRLP-DELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWER 176 (248)
Q Consensus 98 ~L~l~~~~~~~~~~-~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~ 176 (248)
+|++++|...+..+ ..+++++.|++++ |.+.+ ++. +..+++|+.|++++|+++.++. +..+++|+.|++++|.+
T Consensus 247 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~--n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 247 DLDLANNQISNLAPLSGLTKLTELKLGA--NQISN-ISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp EEECCSSCCCCCGGGTTCTTCSEEECCS--SCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCC
T ss_pred EEECCCCccccchhhhcCCCCCEEECCC--CccCc-ccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcC
Confidence 77777766554432 2445666777776 44443 222 6677777777777777766654 66777777777777765
Q ss_pred cccCC-CCCcccceeccccccccccchhhcccccccccccccccccCcchhch
Q 041505 177 LQSLP-KLPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 177 ~~~l~-~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~ 228 (248)
....| ..+++|++|++++|. +... ..+..+++|+.+++++|.+....
T Consensus 322 ~~~~~~~~l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 322 SDISPVSSLTKLQRLFFYNNK-VSDV----SSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp SCCGGGGGCTTCCEEECCSSC-CCCC----GGGTTCTTCCEEECCSSCCCBCG
T ss_pred CCchhhccCccCCEeECCCCc-cCCc----hhhccCCCCCEEeCCCCccCccc
Confidence 43322 234667777777662 3332 23445667777777777766543
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=1.3e-19 Score=151.01 Aligned_cols=238 Identities=13% Similarity=0.050 Sum_probs=165.4
Q ss_pred hhhccchHhhh-hhhcCCCCccEEEccCCCCCcccC-----Ccc-ccC-cccEEEcCCCCCccccChhhhcc-----cCC
Q 041505 6 DDHALELFSLY-AFKQNNPHIVVLNLRDCKSLKSLP-----AGI-HLE-FLKELDLLNGTAIEELPSAIECL-----YKL 72 (248)
Q Consensus 6 ~~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~-----~~~-~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L 72 (248)
.++.+.+.... ..+...++|++|++++|. ++..+ ..+ .++ +|++|++++|.+....+..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 34556666544 455556679999999998 55444 445 677 89999998887766656666665 999
Q ss_pred CEEeccCCcCcCcCCcccc----CC-CCCcEEeccCccCCcccccc--------cCCCCceEecccCCcccc----cccc
Q 041505 73 LHLDLEYCESLNSLPSGLC----KL-KLLNYLTLNCCSNLQRLPDE--------LGNLEALWISREAGVISR----WLPE 135 (248)
Q Consensus 73 ~~L~l~~~~~~~~~~~~l~----~l-~~L~~L~l~~~~~~~~~~~~--------~~~l~~L~l~~~~n~~~~----~~~~ 135 (248)
++|++++|.+.+..+..+. .+ ++|++|++++|.+.+..+.. -.++++|++++ |.+.+ .++.
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~--N~l~~~~~~~l~~ 160 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG--NDLGIKSSDELIQ 160 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT--SCGGGSCHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC--CcCCHHHHHHHHH
Confidence 9999999887766655443 34 89999999998876554432 24788999999 55553 2444
Q ss_pred cccCCC-CcCeEEccCCcCcccc-h----hhhcc-CCcceecccCcccccc----CCC----CCcccceecccccccccc
Q 041505 136 NIGQLS-SLGKLDLQKNNFERIP-E----SVIQL-SKLGRLYLRYWERLQS----LPK----LPCKLHELDAHHCTALES 200 (248)
Q Consensus 136 ~l~~~~-~L~~L~l~~n~l~~lp-~----~l~~~-~~L~~L~l~~n~~~~~----l~~----~~~~L~~L~l~~~~~l~~ 200 (248)
.+...+ +|+.|++++|+++... . .+..+ ++|++|++++|.+... ++. ..++|++|+++++. +..
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~ 239 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHG 239 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCc
Confidence 556665 9999999999996543 3 33445 5999999999976542 222 23589999999873 333
Q ss_pred chh-h-cccccccccccccccccCcchhchHHHHHHH------HhhhhheecccC
Q 041505 201 LSG-L-FSSFEARTRYFDLRYNYNWIEMRSEEFLKML------CKKLNFWQLHYG 247 (248)
Q Consensus 201 ~~~-~-~~~l~~l~~L~~l~l~~n~i~~~~~~~~~~l------~~~l~~~~~~~~ 247 (248)
.+. . ...+..+++|+.|++++|.+.....+.+..+ ++.++...+.++
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 322 1 1333467799999999999777766655555 344555555443
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=2.1e-19 Score=150.85 Aligned_cols=224 Identities=15% Similarity=0.058 Sum_probs=163.0
Q ss_pred hhhhhcCCCCccEEEccCCC---CCcccCCc-------c-ccCcccEEEcCCCCCcc----ccChhhhcccCCCEEeccC
Q 041505 15 LYAFKQNNPHIVVLNLRDCK---SLKSLPAG-------I-HLEFLKELDLLNGTAIE----ELPSAIECLYKLLHLDLEY 79 (248)
Q Consensus 15 l~~~l~~l~~L~~L~l~~~~---~~~~~~~~-------~-~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~ 79 (248)
++..+..+++|++|++++|. +.+.+|.. + .+++|++|++++|.+.. .+|..+..+++|++|++++
T Consensus 52 l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 131 (386)
T 2ca6_A 52 LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 131 (386)
T ss_dssp HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcC
Confidence 34457789999999999974 22233332 3 67999999998888766 4777889999999999999
Q ss_pred CcCcCcCCcc----ccCC---------CCCcEEeccCccCC-cccc---c---ccCCCCceEecccCCcccc-----ccc
Q 041505 80 CESLNSLPSG----LCKL---------KLLNYLTLNCCSNL-QRLP---D---ELGNLEALWISREAGVISR-----WLP 134 (248)
Q Consensus 80 ~~~~~~~~~~----l~~l---------~~L~~L~l~~~~~~-~~~~---~---~~~~l~~L~l~~~~n~~~~-----~~~ 134 (248)
|.+....+.. +..+ ++|++|++++|.+. +.++ . ..++|++|++++ |.+.. ..+
T Consensus 132 n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~--n~l~~~g~~~l~~ 209 (386)
T 2ca6_A 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ--NGIRPEGIEHLLL 209 (386)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS--SCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC--CCCCHhHHHHHHH
Confidence 8775433333 3334 89999999998876 3444 2 456888999998 44442 234
Q ss_pred ccccCCCCcCeEEccCCcC-----cccchhhhccCCcceecccCcccccc----CCC-----CCcccceeccccccccc-
Q 041505 135 ENIGQLSSLGKLDLQKNNF-----ERIPESVIQLSKLGRLYLRYWERLQS----LPK-----LPCKLHELDAHHCTALE- 199 (248)
Q Consensus 135 ~~l~~~~~L~~L~l~~n~l-----~~lp~~l~~~~~L~~L~l~~n~~~~~----l~~-----~~~~L~~L~l~~~~~l~- 199 (248)
..+..+++|+.|++++|.+ ..+|..+..+++|++|++++|.+... ++. ..++|++|++++|..-.
T Consensus 210 ~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289 (386)
T ss_dssp TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred HHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence 4788999999999999999 56788889999999999999976432 232 15889999999984332
Q ss_pred ---cchhhcccccccccccccccccCcchhchH--HHHHHHHhhhhhe
Q 041505 200 ---SLSGLFSSFEARTRYFDLRYNYNWIEMRSE--EFLKMLCKKLNFW 242 (248)
Q Consensus 200 ---~~~~~~~~l~~l~~L~~l~l~~n~i~~~~~--~~~~~l~~~l~~~ 242 (248)
.++... ...+++|+.|++++|.+...+. ..+...++.++..
T Consensus 290 g~~~l~~~l--~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~ 335 (386)
T 2ca6_A 290 AVRTLKTVI--DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 335 (386)
T ss_dssp HHHHHHHHH--HHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHH--HhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcc
Confidence 133222 1346799999999999998763 5555555555543
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=6.5e-18 Score=136.48 Aligned_cols=183 Identities=22% Similarity=0.170 Sum_probs=140.9
Q ss_pred hhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcC
Q 041505 6 DDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLN 84 (248)
Q Consensus 6 ~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 84 (248)
+.+.+.++.+|..+. +++++|++++|.+.+..+..+ .+++|++|++++|.+. .++. ...+++|++|++++|. ..
T Consensus 16 ~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~-l~ 90 (290)
T 1p9a_G 16 NCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQ-LQ 90 (290)
T ss_dssp ECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSC-CS
T ss_pred ECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC-CCCCCcCCEEECCCCc-CC
Confidence 334566778876553 789999999998665556667 8999999999777654 4444 3789999999999875 45
Q ss_pred cCCccccCCCCCcEEeccCccCCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-hh
Q 041505 85 SLPSGLCKLKLLNYLTLNCCSNLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-SV 160 (248)
Q Consensus 85 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l 160 (248)
.+|..+..+++|++|++++|.+.+..+. .+++|+.|++++ |.+....+..+..+++|+.|++++|+++.+|. .+
T Consensus 91 ~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 168 (290)
T 1p9a_G 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168 (290)
T ss_dssp SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC--CCCCccChhhcccccCCCEEECCCCcCCccCHHHh
Confidence 7888888899999999999877655444 445677888888 66665555668889999999999999988876 46
Q ss_pred hccCCcceecccCccccccCCCC---Ccccceecccccc
Q 041505 161 IQLSKLGRLYLRYWERLQSLPKL---PCKLHELDAHHCT 196 (248)
Q Consensus 161 ~~~~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~~ 196 (248)
..+++|++|++++|.+. .+|.. ..+|+.+++.+++
T Consensus 169 ~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 169 NGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred cCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 78999999999999654 55543 2568888888653
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=1.3e-19 Score=149.19 Aligned_cols=215 Identities=16% Similarity=0.130 Sum_probs=158.7
Q ss_pred hccchHhhhhhhcCCCCccEEEccCCCCCcc-cCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcC-
Q 041505 8 HALELFSLYAFKQNNPHIVVLNLRDCKSLKS-LPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLN- 84 (248)
Q Consensus 8 ~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~- 84 (248)
+.+.+...+..+..+++|++|++++|.+.+. ++..+ .+++|++|++++|......+..+..+++|++|++++|...+
T Consensus 78 ~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 78 PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE 157 (336)
T ss_dssp TTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH
T ss_pred CCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH
Confidence 3444555555567789999999999985554 66666 89999999999888776778888999999999999984333
Q ss_pred -cCCccccCCCCCcEEeccCc-cCCcc-cc---cccC-CCCceEecccCCccc-ccccccccCCCCcCeEEccCCc-Cc-
Q 041505 85 -SLPSGLCKLKLLNYLTLNCC-SNLQR-LP---DELG-NLEALWISREAGVIS-RWLPENIGQLSSLGKLDLQKNN-FE- 154 (248)
Q Consensus 85 -~~~~~l~~l~~L~~L~l~~~-~~~~~-~~---~~~~-~l~~L~l~~~~n~~~-~~~~~~l~~~~~L~~L~l~~n~-l~- 154 (248)
.++..+..+++|++|++++| .+.+. ++ ..++ +|++|+++++..... ..++..++.+++|+.|++++|. ++
T Consensus 158 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 158 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH
Confidence 35666888999999999998 66542 33 3567 899999998531233 4567778899999999999999 54
Q ss_pred ccchhhhccCCcceecccCccccccC----CCCCcccceeccccccccccchhhcccccccccccccccccCcchhch
Q 041505 155 RIPESVIQLSKLGRLYLRYWERLQSL----PKLPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 155 ~lp~~l~~~~~L~~L~l~~n~~~~~l----~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~ 228 (248)
..+..+..+++|++|++++|...... -...++|++|++++| +.. ..+..+. ..+..|+++.|.+....
T Consensus 238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~--~~~~~l~--~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 238 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPD--GTLQLLK--EALPHLQINCSHFTTIA 309 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCT--TCHHHHH--HHSTTSEESCCCSCCTT
T ss_pred HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCH--HHHHHHH--hhCcceEEecccCcccc
Confidence 56678889999999999999532211 123588999999988 221 1112221 24677778888887653
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=1.1e-17 Score=143.74 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=56.0
Q ss_pred cchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCc
Q 041505 10 LELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPS 88 (248)
Q Consensus 10 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 88 (248)
..+..++ .+..+++|++|++++|. +..++. + .+++|++|++++|... .++. +.++++|++|++++|.+.+ ++.
T Consensus 56 ~~i~~l~-~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n~l~~-~~~ 129 (466)
T 1o6v_A 56 LGIKSID-GVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLFNNQITD-IDP 129 (466)
T ss_dssp SCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CGG
T ss_pred CCCccCc-chhhhcCCCEEECCCCc-cCCchh-hhccccCCEEECCCCccc-cChh-hcCCCCCCEEECCCCCCCC-ChH
Confidence 3445554 35667777777777776 333443 5 7777777777655543 3333 6777777777777764433 332
Q ss_pred cccCCCCCcEEeccCccCC
Q 041505 89 GLCKLKLLNYLTLNCCSNL 107 (248)
Q Consensus 89 ~l~~l~~L~~L~l~~~~~~ 107 (248)
+..+++|++|++++|.+.
T Consensus 130 -~~~l~~L~~L~l~~n~l~ 147 (466)
T 1o6v_A 130 -LKNLTNLNRLELSSNTIS 147 (466)
T ss_dssp -GTTCTTCSEEEEEEEEEC
T ss_pred -HcCCCCCCEEECCCCccC
Confidence 666677777777665543
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.9e-17 Score=146.42 Aligned_cols=204 Identities=25% Similarity=0.258 Sum_probs=121.5
Q ss_pred hhccchHhhhhhhcCCCCccEEEccCCCCCcccCCccccCcccEEEcCCCCCc-------------------cccChhhh
Q 041505 7 DHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAI-------------------EELPSAIE 67 (248)
Q Consensus 7 ~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-------------------~~~~~~~~ 67 (248)
++.+.++.+|. .+++|++|++++|. +..+|. .+++|++|++++|.+. ..+|.
T Consensus 68 L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~--- 138 (622)
T 3g06_A 68 IPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV--- 138 (622)
T ss_dssp ECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCC---
T ss_pred ecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCC---
Confidence 34445555554 35666666666665 344444 4455555555444322 22232
Q ss_pred cccCCCEEeccCCcCcCcCCccc---cCC--------------CCCcEEeccCccCCcccccccCCCCceEecccCCccc
Q 041505 68 CLYKLLHLDLEYCESLNSLPSGL---CKL--------------KLLNYLTLNCCSNLQRLPDELGNLEALWISREAGVIS 130 (248)
Q Consensus 68 ~l~~L~~L~l~~~~~~~~~~~~l---~~l--------------~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~ 130 (248)
.+++|++|++++|.+.+ +|..+ ..+ ++|+.|++++|.+. .+|..+++++.|++.+ |.+.
T Consensus 139 ~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~--N~l~ 214 (622)
T 3g06_A 139 LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYN--NRLT 214 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCS--SCCS
T ss_pred CCCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC-CCCCccchhhEEECcC--Cccc
Confidence 12556666666554332 22211 111 44555555554333 3444445555555555 3233
Q ss_pred ccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCccccccCCCCCcccceeccccccccccchhhcccccc
Q 041505 131 RWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEA 210 (248)
Q Consensus 131 ~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~ 210 (248)
.+|. .+++|+.|++++|.++.+| ..+++|+.|++++|.+ +.+|..+++|+.|++++| .+..++. .+..
T Consensus 215 -~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L-~~lp~~~~~L~~L~Ls~N-~L~~lp~---~l~~ 282 (622)
T 3g06_A 215 -SLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRL-TSLPMLPSGLLSLSVYRN-QLTRLPE---SLIH 282 (622)
T ss_dssp -SCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSS-CCCSCCG---GGGG
T ss_pred -ccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCC-CcCCcccccCcEEeCCCC-CCCcCCH---HHhh
Confidence 1332 2367888888888888887 4568899999999854 467777889999999987 4555554 3557
Q ss_pred cccccccccccCcchhchHHHHHHH
Q 041505 211 RTRYFDLRYNYNWIEMRSEEFLKML 235 (248)
Q Consensus 211 l~~L~~l~l~~n~i~~~~~~~~~~l 235 (248)
+++|+.+++++|.+....+..+..+
T Consensus 283 l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 283 LSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp SCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred ccccCEEEecCCCCCCcCHHHHHhc
Confidence 7799999999999987777666655
No 85
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=3.3e-17 Score=143.45 Aligned_cols=188 Identities=22% Similarity=0.210 Sum_probs=148.4
Q ss_pred CCccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEecc
Q 041505 23 PHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLN 102 (248)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 102 (248)
.+++.|++++|. +..+|..+ .++|++|++++|.+. .+| ..+++|++|++++|.+.+ +|. +.. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~l-~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDNL-PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSCC-CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCC-CCccCHhH-cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 489999999998 45577755 378999999777654 778 568999999999987665 777 655 99999999
Q ss_pred CccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCccccccCCC
Q 041505 103 CCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPK 182 (248)
Q Consensus 103 ~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~ 182 (248)
+|.+.+ +|..+++|+.|++++ |.+.+ +|. .+++|+.|++++|.++.+|. +. ++|+.|++++|.+. .+|.
T Consensus 129 ~N~l~~-lp~~l~~L~~L~Ls~--N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~ 197 (571)
T 3cvr_A 129 NNQLTM-LPELPALLEYINADN--NQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA 197 (571)
T ss_dssp SSCCSC-CCCCCTTCCEEECCS--SCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC
T ss_pred CCcCCC-CCCcCccccEEeCCC--CccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh
Confidence 987766 777778899999999 66664 665 57899999999999998988 55 99999999999654 6676
Q ss_pred CCccc-------ceeccccccccccchhhcccccccccccccccccCcchhchHHHHHHH
Q 041505 183 LPCKL-------HELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRSEEFLKML 235 (248)
Q Consensus 183 ~~~~L-------~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~~~~~~~l 235 (248)
...+| +.|++++| .+..++.... .+++|+.|++++|.+....+..+..+
T Consensus 198 ~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~---~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 VPVRNHHSEETEIFFRCREN-RITHIPENIL---SLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC--------CCEEEECCSS-CCCCCCGGGG---GSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HHHhhhcccccceEEecCCC-cceecCHHHh---cCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 54578 99999987 5566655443 46799999999999988766666555
No 86
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=1.6e-17 Score=142.25 Aligned_cols=166 Identities=23% Similarity=0.237 Sum_probs=70.4
Q ss_pred cccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCcccccccCCCCceEecccC
Q 041505 47 FLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWISREA 126 (248)
Q Consensus 47 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~ 126 (248)
.|++|++++|... .+|. ++.+++|++|++++|.+. .+|.. +++|++|++++|.+.+ +|....+++.|++++
T Consensus 216 ~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~-- 286 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTD-LPELPQSLTFLDVSE-- 286 (454)
T ss_dssp TCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCS--
T ss_pred cccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccc-cCcccCcCCEEECcC--
Confidence 4444444333322 3442 455555555555554332 23321 2445555555544332 444444555555555
Q ss_pred Ccccc--cccccc-------------cCC-CCcCeEEccCCcCcccchhhhccCCcceecccCccccccCCCCCccccee
Q 041505 127 GVISR--WLPENI-------------GQL-SSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPKLPCKLHEL 190 (248)
Q Consensus 127 n~~~~--~~~~~l-------------~~~-~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~~~~~L~~L 190 (248)
|.+.+ .+|..+ ... ++|+.|++++|+++.+|.. +++|++|++++|.+. .+|..+++|++|
T Consensus 287 N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~-~lp~~l~~L~~L 362 (454)
T 1jl5_A 287 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLA-EVPELPQNLKQL 362 (454)
T ss_dssp SCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCCCCCTTCCEE
T ss_pred CccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccc-cccchhhhccEE
Confidence 32332 111111 112 3566666666666555543 466777777776543 455556677777
Q ss_pred ccccccccccchhhccccccc-------------ccccccccccCcchh
Q 041505 191 DAHHCTALESLSGLFSSFEAR-------------TRYFDLRYNYNWIEM 226 (248)
Q Consensus 191 ~l~~~~~l~~~~~~~~~l~~l-------------~~L~~l~l~~n~i~~ 226 (248)
+++++.- ..++.....+..+ ++|+.|++++|.+..
T Consensus 363 ~L~~N~l-~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 363 HVEYNPL-REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp ECCSSCC-SSCCCCCTTCCEEECCC------------------------
T ss_pred ECCCCCC-CcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 7776532 2222111222222 678888888887765
No 87
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=9.9e-18 Score=148.29 Aligned_cols=216 Identities=25% Similarity=0.197 Sum_probs=127.2
Q ss_pred chhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcC
Q 041505 5 VDDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLN 84 (248)
Q Consensus 5 ~~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 84 (248)
++++.+.++.+|..+. ++|++|++++|. +..+|. .+++|++|++++|.+ +.+|. .+++|++|++++|.+.
T Consensus 45 L~ls~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~l~- 114 (622)
T 3g06_A 45 LNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQL-TSLPV---LPPGLLELSIFSNPLT- 114 (622)
T ss_dssp EECCSSCCSCCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCCC-SCCCC---CCTTCCEEEECSCCCC-
T ss_pred EEecCCCcCccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCcC-CcCCC---CCCCCCEEECcCCcCC-
Confidence 4556677788887654 789999999987 556766 678999999977764 56675 7788999999887544
Q ss_pred cCCccccCCCCCcEEeccCccCCcccccccCCCCceEecccCCcccccccc---cc--------------cCCCCcCeEE
Q 041505 85 SLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPE---NI--------------GQLSSLGKLD 147 (248)
Q Consensus 85 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~---~l--------------~~~~~L~~L~ 147 (248)
.+|. .+++|+.|++++|.+. .+|..+++|+.|+++. |.+.+ +|. .+ ..+++|+.|+
T Consensus 115 ~l~~---~l~~L~~L~L~~N~l~-~lp~~l~~L~~L~Ls~--N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~ 187 (622)
T 3g06_A 115 HLPA---LPSGLCKLWIFGNQLT-SLPVLPPGLQELSVSD--NQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELS 187 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCS--SCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred CCCC---CCCCcCEEECCCCCCC-cCCCCCCCCCEEECcC--CcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEE
Confidence 3444 3456667776665433 3555556666666665 33332 221 11 1225666677
Q ss_pred ccCCcCcccchhhhc-----------------cCCcceecccCccccccCCCCCcccceeccccccccccchhhcccccc
Q 041505 148 LQKNNFERIPESVIQ-----------------LSKLGRLYLRYWERLQSLPKLPCKLHELDAHHCTALESLSGLFSSFEA 210 (248)
Q Consensus 148 l~~n~l~~lp~~l~~-----------------~~~L~~L~l~~n~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~ 210 (248)
+++|.++.+|..+.. +++|+.|++++|.+ +.+|..+++|+.|+++++ .+..++. .
T Consensus 188 Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L-~~lp~~l~~L~~L~Ls~N-~L~~lp~------~ 259 (622)
T 3g06_A 188 VSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL-TSLPVLPSELKELMVSGN-RLTSLPM------L 259 (622)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSS-CCSCCCC------C
T ss_pred CCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCcc-CcCCCCCCcCcEEECCCC-CCCcCCc------c
Confidence 777766655432210 13444455554432 234444455555555554 2333322 3
Q ss_pred cccccccccccCcchhchHHHHHHHHhhhhheecccC
Q 041505 211 RTRYFDLRYNYNWIEMRSEEFLKMLCKKLNFWQLHYG 247 (248)
Q Consensus 211 l~~L~~l~l~~n~i~~~~~~~~~~l~~~l~~~~~~~~ 247 (248)
+++|+.|++++|.|...+.. +.. ++.|+...+.++
T Consensus 260 ~~~L~~L~Ls~N~L~~lp~~-l~~-l~~L~~L~L~~N 294 (622)
T 3g06_A 260 PSGLLSLSVYRNQLTRLPES-LIH-LSSETTVNLEGN 294 (622)
T ss_dssp CTTCCEEECCSSCCCSCCGG-GGG-SCTTCEEECCSC
T ss_pred cccCcEEeCCCCCCCcCCHH-Hhh-ccccCEEEecCC
Confidence 45777888888877755432 222 355555555544
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=5.2e-18 Score=140.61 Aligned_cols=202 Identities=18% Similarity=0.198 Sum_probs=120.4
Q ss_pred cchHhhhhhhcCCCCccEEEccCCCCCcccCC-cc-ccCcccEEEcCCCCCccccCh-hhhcccCCCEEe-ccCCcCcCc
Q 041505 10 LELFSLYAFKQNNPHIVVLNLRDCKSLKSLPA-GI-HLEFLKELDLLNGTAIEELPS-AIECLYKLLHLD-LEYCESLNS 85 (248)
Q Consensus 10 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~-l~~~~~~~~ 85 (248)
+.++++|..+ .+++++|++++|. +..+|. .+ ++++|++|++++|.+.+.+|. +|.++++++++. +..|.+...
T Consensus 19 ~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 19 SKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 3456666544 3566777777766 445554 34 677777777766665555543 456666655533 333344333
Q ss_pred CCccccCCCCCcEEeccCccCCcc------------------------ccc-ccC----CCCceEecccCCccccccccc
Q 041505 86 LPSGLCKLKLLNYLTLNCCSNLQR------------------------LPD-ELG----NLEALWISREAGVISRWLPEN 136 (248)
Q Consensus 86 ~~~~l~~l~~L~~L~l~~~~~~~~------------------------~~~-~~~----~l~~L~l~~~~n~~~~~~~~~ 136 (248)
.|..+..+++|++|++++|.+... ++. .+. .++.|++++ |.+. .++..
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~--N~i~-~i~~~ 172 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK--NGIQ-EIHNS 172 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS--SCCC-EECTT
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc--cccc-CCChh
Confidence 455566666666666666544322 221 111 122445555 4343 35555
Q ss_pred ccCCCCcCeEEccC-CcCcccch-hhhccCCcceecccCccccccCCC-CCcccceeccccccccccchhhccccccccc
Q 041505 137 IGQLSSLGKLDLQK-NNFERIPE-SVIQLSKLGRLYLRYWERLQSLPK-LPCKLHELDAHHCTALESLSGLFSSFEARTR 213 (248)
Q Consensus 137 l~~~~~L~~L~l~~-n~l~~lp~-~l~~~~~L~~L~l~~n~~~~~l~~-~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~ 213 (248)
....++|+.+++.+ |.++.+|. .|..+++|++|++++|++ +.+|. .+.+|+.|.+.++..++.++. +..+++
T Consensus 173 ~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l-~~lp~~~~~~L~~L~~l~~~~l~~lP~----l~~l~~ 247 (350)
T 4ay9_X 173 AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNLKKLPT----LEKLVA 247 (350)
T ss_dssp SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC-CCCCSSSCTTCCEEECTTCTTCCCCCC----TTTCCS
T ss_pred hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc-CccChhhhccchHhhhccCCCcCcCCC----chhCcC
Confidence 55566778888764 66777775 567888888899888864 45554 567888888888877777663 445567
Q ss_pred ccccccccC
Q 041505 214 YFDLRYNYN 222 (248)
Q Consensus 214 L~~l~l~~n 222 (248)
|+.+++.++
T Consensus 248 L~~l~l~~~ 256 (350)
T 4ay9_X 248 LMEASLTYP 256 (350)
T ss_dssp CCEEECSCH
T ss_pred hhhCcCCCC
Confidence 777776543
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=3.5e-17 Score=133.30 Aligned_cols=178 Identities=22% Similarity=0.254 Sum_probs=138.9
Q ss_pred hhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCc
Q 041505 7 DHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNS 85 (248)
Q Consensus 7 ~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 85 (248)
++.+.+..++ .+..+++|++|++++|. +..++. + .+++|++|++++|.+ ..++ .+..+++|++|++++|.+.+
T Consensus 48 l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~~L~l~~n~l~~- 121 (308)
T 1h6u_A 48 AFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPL-KNVS-AIAGLQSIKTLDLTSTQITD- 121 (308)
T ss_dssp CTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCEEECTTSCCCC-
T ss_pred eeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcC-CCch-hhcCCCCCCEEECCCCCCCC-
Confidence 3444566776 57889999999999998 555555 6 899999999977775 4444 58899999999999987554
Q ss_pred CCccccCCCCCcEEeccCccCCcccc-cccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccC
Q 041505 86 LPSGLCKLKLLNYLTLNCCSNLQRLP-DELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLS 164 (248)
Q Consensus 86 ~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~ 164 (248)
++. +..+++|++|++++|.+.+..+ ..+++|+.|++++ |.+.+ ++. +..+++|+.|++++|.++.++. +..++
T Consensus 122 ~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~--n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~ 195 (308)
T 1h6u_A 122 VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN--AQVSD-LTP-LANLSKLTTLKADDNKISDISP-LASLP 195 (308)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS--SCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCT
T ss_pred chh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccC--CcCCC-Chh-hcCCCCCCEEECCCCccCcChh-hcCCC
Confidence 443 8899999999999987764332 3567788999998 55654 444 8999999999999999988875 78999
Q ss_pred CcceecccCccccccCC-CCCcccceecccccc
Q 041505 165 KLGRLYLRYWERLQSLP-KLPCKLHELDAHHCT 196 (248)
Q Consensus 165 ~L~~L~l~~n~~~~~l~-~~~~~L~~L~l~~~~ 196 (248)
+|++|++++|.+....+ ..+++|+.|+++++.
T Consensus 196 ~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 196 NLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred CCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 99999999997643222 234789999988873
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=2.6e-17 Score=126.43 Aligned_cols=165 Identities=16% Similarity=0.023 Sum_probs=95.1
Q ss_pred cchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCc
Q 041505 10 LELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPS 88 (248)
Q Consensus 10 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 88 (248)
+.+..+|..+ .+++++|++++|.+.+..+..+ .+++|++|++++|.+....+..+.++++|++|++++|.+.+..+.
T Consensus 17 ~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 17 QGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 3445555433 4577888888877443333344 778888888866655433334467778888888887765544444
Q ss_pred cccCCCCCcEEeccCccCCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCC
Q 041505 89 GLCKLKLLNYLTLNCCSNLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSK 165 (248)
Q Consensus 89 ~l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~ 165 (248)
.+..+++|++|++++|.+.+..+. .+++++.|++++ |.+.+..+..+..+++|+.|++++|.+. ..+++
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~--N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~ 166 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ--NQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPG 166 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTT
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC--CccceeCHHHhccCCCccEEEecCCCee------cCCCC
Confidence 567777888888877655433332 233445555555 4444333333555666666666666432 22345
Q ss_pred cceecccCccccccCCCCC
Q 041505 166 LGRLYLRYWERLQSLPKLP 184 (248)
Q Consensus 166 L~~L~l~~n~~~~~l~~~~ 184 (248)
++.|++..|.+.+.+|..+
T Consensus 167 l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp THHHHHHHHHCTTTBBCTT
T ss_pred HHHHHHHHHhCCceeeccC
Confidence 5556665555555555443
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.8e-17 Score=126.36 Aligned_cols=148 Identities=17% Similarity=0.183 Sum_probs=97.0
Q ss_pred cCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcE
Q 041505 20 QNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNY 98 (248)
Q Consensus 20 ~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 98 (248)
+.+++|++|++++|. +..+| .+ .+++|++|++++|. +..+ ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 445678888888876 55666 45 78888888887663 3333 35778888888888887777667777888888888
Q ss_pred EeccCccCCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCcc
Q 041505 99 LTLNCCSNLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWE 175 (248)
Q Consensus 99 L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~ 175 (248)
|++++|.+.+..|. .+++|+.|++++ |.....++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~--n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSY--NGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCS--CTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccC--CCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 88888766554443 333455666665 33222233 4666666666666666666554 45566666666666664
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=1.7e-18 Score=148.35 Aligned_cols=214 Identities=20% Similarity=0.132 Sum_probs=95.7
Q ss_pred hhhhcCCCCccEEEccCCCCCcccCCcc--ccC----cccEEEcCCCCCcc----ccChhhhcccCCCEEeccCCcCcCc
Q 041505 16 YAFKQNNPHIVVLNLRDCKSLKSLPAGI--HLE----FLKELDLLNGTAIE----ELPSAIECLYKLLHLDLEYCESLNS 85 (248)
Q Consensus 16 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~l~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~ 85 (248)
+..+..+++|++|++++|.+.+..+..+ .++ +|++|++++|.+.. .++..+..+++|++|++++|.+...
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 3444444555555555554322222111 222 35555554444332 2344445555555555555443322
Q ss_pred CCcccc-----CCCCCcEEeccCccCCccc----cc---ccCCCCceEecccCCccccccccccc-----CCCCcCeEEc
Q 041505 86 LPSGLC-----KLKLLNYLTLNCCSNLQRL----PD---ELGNLEALWISREAGVISRWLPENIG-----QLSSLGKLDL 148 (248)
Q Consensus 86 ~~~~l~-----~l~~L~~L~l~~~~~~~~~----~~---~~~~l~~L~l~~~~n~~~~~~~~~l~-----~~~~L~~L~l 148 (248)
.+..+. ..++|++|++++|.+.+.. +. ..+++++|++++ |.+.+..+..+. ..++|+.|++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~--n~i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN--NDINEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS--SBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC--CCcchHHHHHHHHHHhcCCCCceEEEc
Confidence 221111 1234555555554443321 11 124455555555 333322222221 2345666666
Q ss_pred cCCcCcc-----cchhhhccCCcceecccCcccccc--------CCCCCcccceeccccccccccchh--hccccccccc
Q 041505 149 QKNNFER-----IPESVIQLSKLGRLYLRYWERLQS--------LPKLPCKLHELDAHHCTALESLSG--LFSSFEARTR 213 (248)
Q Consensus 149 ~~n~l~~-----lp~~l~~~~~L~~L~l~~n~~~~~--------l~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~l~~ 213 (248)
++|.++. ++..+..+++|++|++++|.+... +....++|++|++++| .+..... -...+..+++
T Consensus 207 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~ 285 (461)
T 1z7x_W 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKES 285 (461)
T ss_dssp TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTT
T ss_pred cCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCC
Confidence 6666543 345555667777777776653221 1112356677777666 2222110 0111223456
Q ss_pred ccccccccCcchhchHHHH
Q 041505 214 YFDLRYNYNWIEMRSEEFL 232 (248)
Q Consensus 214 L~~l~l~~n~i~~~~~~~~ 232 (248)
|+.|++++|.+...+...+
T Consensus 286 L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 286 LKELSLAGNELGDEGARLL 304 (461)
T ss_dssp CCEEECTTCCCHHHHHHHH
T ss_pred cceEECCCCCCchHHHHHH
Confidence 6666666666655544333
No 93
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=5.8e-17 Score=125.69 Aligned_cols=146 Identities=21% Similarity=0.221 Sum_probs=75.8
Q ss_pred EEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccC
Q 041505 27 VLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSN 106 (248)
Q Consensus 27 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 106 (248)
.++.+++. +..+|..+. +.+++|++++|.+....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 15 ~v~c~~~~-l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKG-LTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSC-CSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCC-cCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 34444443 333443322 3445555544433322223444555555555555444444444455555555555555443
Q ss_pred Cccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-hhhccCCcceecccCccc
Q 041505 107 LQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLYLRYWER 176 (248)
Q Consensus 107 ~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~l~~n~~ 176 (248)
...-+. .+.+|+.|++++ |.+.+..+..+..+++|+.|++++|.++.++. .+..+++|++|++++|++
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNA--NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CccCHhHccCCCCCCEEECCC--CCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 321111 223344444544 44554455667777778888888887776654 466777788888877754
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=9.5e-17 Score=124.48 Aligned_cols=148 Identities=18% Similarity=0.130 Sum_probs=97.9
Q ss_pred cEEEccCCCCCcccCCccccCcccEEEcCCCCCccccC-hhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCc
Q 041505 26 VVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELP-SAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCC 104 (248)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 104 (248)
+.+++++|. ++.+|..+ ...+++|++++|.+....+ ..+.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~-l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSC-CSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCC-cccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 467777765 55566544 1235677776665444323 33667777777777776655555556777777777777776
Q ss_pred cCCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCccc-chhhhccCCcceecccCcccc
Q 041505 105 SNLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLYLRYWERL 177 (248)
Q Consensus 105 ~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~~~~L~~L~l~~n~~~ 177 (248)
.+.+..+. .+.+|++|++++ |.+.+..|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRS--NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTT--SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCC--CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 66544443 334555666766 556655567788888888888888888766 567788888888888888653
No 95
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=7.9e-18 Score=144.16 Aligned_cols=212 Identities=17% Similarity=0.106 Sum_probs=100.8
Q ss_pred hhhhcCCCCccEEEccCCCCCcccCCcc------ccCcccEEEcCCCCCccc----cChhhhcccCCCEEeccCCcCcCc
Q 041505 16 YAFKQNNPHIVVLNLRDCKSLKSLPAGI------HLEFLKELDLLNGTAIEE----LPSAIECLYKLLHLDLEYCESLNS 85 (248)
Q Consensus 16 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~------~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~ 85 (248)
+..+..+++|++|++++|.+.+..+..+ ..++|++|++++|.+... ++..+..+++|++|++++|.+...
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 4444445555555555554222111111 123455555544443321 233344556666666665543332
Q ss_pred CCcccc-----CCCCCcEEeccCccCCcc----ccc---ccCCCCceEecccCCcccccc-----cccccCCCCcCeEEc
Q 041505 86 LPSGLC-----KLKLLNYLTLNCCSNLQR----LPD---ELGNLEALWISREAGVISRWL-----PENIGQLSSLGKLDL 148 (248)
Q Consensus 86 ~~~~l~-----~l~~L~~L~l~~~~~~~~----~~~---~~~~l~~L~l~~~~n~~~~~~-----~~~l~~~~~L~~L~l 148 (248)
.+..+. ..++|++|++++|.+... ++. ..+++++|++++ |.+.+.. +.....+++|+.|++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~--n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS--NKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS--SBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC--CcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 222221 134566666666554432 222 234566666666 3333211 112234667777777
Q ss_pred cCCcCcc-----cchhhhccCCcceecccCcccccc--------CCCCCcccceeccccccccccchh-hcccccccccc
Q 041505 149 QKNNFER-----IPESVIQLSKLGRLYLRYWERLQS--------LPKLPCKLHELDAHHCTALESLSG-LFSSFEARTRY 214 (248)
Q Consensus 149 ~~n~l~~-----lp~~l~~~~~L~~L~l~~n~~~~~--------l~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~l~~L 214 (248)
++|.++. ++..+..+++|++|++++|.+... +....++|++|++++|.-...... -...+..+++|
T Consensus 264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence 7777754 556666677777777777754221 111224677777766632111000 01122234555
Q ss_pred cccccccCcchhchH
Q 041505 215 FDLRYNYNWIEMRSE 229 (248)
Q Consensus 215 ~~l~l~~n~i~~~~~ 229 (248)
+.|++++|.+...+.
T Consensus 344 ~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 344 LELQISNNRLEDAGV 358 (461)
T ss_dssp CEEECCSSBCHHHHH
T ss_pred cEEEccCCccccccH
Confidence 666666665555443
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.9e-16 Score=127.92 Aligned_cols=163 Identities=23% Similarity=0.246 Sum_probs=108.6
Q ss_pred cCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcE
Q 041505 20 QNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNY 98 (248)
Q Consensus 20 ~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 98 (248)
..+++|+.|++++|. +..++. + .+++|++|++++|.+. .++. +.++++|++|++++|.+.+ ++ .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 446677888888876 555543 4 7788888888666544 3444 7778888888888765433 33 3777788888
Q ss_pred EeccCccCCcccc--cccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCccc
Q 041505 99 LTLNCCSNLQRLP--DELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWER 176 (248)
Q Consensus 99 L~l~~~~~~~~~~--~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~ 176 (248)
|++++|.+.+ ++ ..+++|+.|++++ |.+.+ + ..++.+++|+.|++++|.++.++. +..+++|++|++++|.+
T Consensus 117 L~L~~n~i~~-~~~l~~l~~L~~L~l~~--n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISD-INGLVHLPQLESLYLGN--NKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCC-CGGGGGCTTCCEEECCS--SCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCC-ChhhcCCCCCCEEEccC--CcCCc-c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence 8888766554 22 2455667777777 44543 2 567777788888888887776655 77778888888887754
Q ss_pred cccCCC--CCcccceeccccc
Q 041505 177 LQSLPK--LPCKLHELDAHHC 195 (248)
Q Consensus 177 ~~~l~~--~~~~L~~L~l~~~ 195 (248)
. .++. .+++|+.|+++++
T Consensus 191 ~-~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 191 S-DLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp C-BCGGGTTCTTCSEEEEEEE
T ss_pred C-CChhhccCCCCCEEECcCC
Confidence 3 2332 2366777777665
No 97
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=1.2e-16 Score=141.56 Aligned_cols=162 Identities=20% Similarity=0.121 Sum_probs=121.4
Q ss_pred chHhhhhhhcCCCCccEEEccCCCCCcccC-Ccc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCc
Q 041505 11 ELFSLYAFKQNNPHIVVLNLRDCKSLKSLP-AGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPS 88 (248)
Q Consensus 11 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 88 (248)
.++++|+.+ .+++++|++++|. +..+| ..+ .+++|++|++++|.+....|.+|.++++|++|++++|.+.+..+.
T Consensus 42 ~l~~vP~~l--p~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 42 NFYKIPDNL--PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp CCSSCCSSS--CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CcCccCCCC--CcCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 566777654 2589999999998 55554 567 899999999988776544456799999999999999876555556
Q ss_pred cccCCCCCcEEeccCccCCccccc---ccCCCCceEecccCCcccc-cccccccCCCCcCeEEccCCcCcccc-hhhhcc
Q 041505 89 GLCKLKLLNYLTLNCCSNLQRLPD---ELGNLEALWISREAGVISR-WLPENIGQLSSLGKLDLQKNNFERIP-ESVIQL 163 (248)
Q Consensus 89 ~l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~l~~~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~lp-~~l~~~ 163 (248)
.|..+++|++|++++|++.+..+. .+++|++|++++ |.+.. ..|..++.+++|+.|++++|+++.++ ..+..+
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~--N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH--NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS--SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc--CccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 688999999999999877654443 345677888888 55543 46778899999999999999997664 466665
Q ss_pred CCcc----eecccCcccc
Q 041505 164 SKLG----RLYLRYWERL 177 (248)
Q Consensus 164 ~~L~----~L~l~~n~~~ 177 (248)
.+++ .++++.|.+.
T Consensus 197 ~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp HTCTTCCCEEECTTCCCC
T ss_pred hhhhhhhhhhhcccCccc
Confidence 5544 4566666543
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=1.5e-16 Score=124.07 Aligned_cols=146 Identities=24% Similarity=0.242 Sum_probs=83.8
Q ss_pred cEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCcc
Q 041505 26 VVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCS 105 (248)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 105 (248)
+.++.+++. ++.+|..+. ++|++|++++|.+....|..+.++++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 22 ~~v~c~~~~-l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKR-HASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSC-CSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCC-cCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 445555544 445554332 456666665555544445555666666666666654433223334556666666666654
Q ss_pred CCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-hhhccCCcceecccCccc
Q 041505 106 NLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLYLRYWER 176 (248)
Q Consensus 106 ~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~l~~n~~ 176 (248)
+.+..+. .+++|+.|++++ |.+. .+|..+..+++|+.|++++|.++.+|. .+..+++|+.|++.+|++
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~--N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCC--NKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCS--SCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCccChhHhCcchhhCeEeccC--Cccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 4433222 233444555555 3344 466667777778888888887776663 566777788888777754
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=2.9e-16 Score=126.86 Aligned_cols=161 Identities=25% Similarity=0.221 Sum_probs=128.1
Q ss_pred hhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcC
Q 041505 6 DDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLN 84 (248)
Q Consensus 6 ~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 84 (248)
.++.+.+..++ .+..+++|++|++++|.+ ..++. + .+++|++|++++|.+ ..+|. +..+++|++|++++|.+.+
T Consensus 52 ~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~L~~n~i~~ 126 (291)
T 1h6t_A 52 IANNSDIKSVQ-GIQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENKV-KDLSS-LKDLKKLKSLSLEHNGISD 126 (291)
T ss_dssp ECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCC-CCGGG-GTTCTTCCEEECTTSCCCC
T ss_pred EccCCCcccCh-hHhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCcC-CCChh-hccCCCCCEEECCCCcCCC
Confidence 34455666675 478899999999999984 44544 6 899999999977765 44454 8999999999999986654
Q ss_pred cCCccccCCCCCcEEeccCccCCccc-ccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhcc
Q 041505 85 SLPSGLCKLKLLNYLTLNCCSNLQRL-PDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQL 163 (248)
Q Consensus 85 ~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~ 163 (248)
+ ..+..+++|++|++++|.+.+.- ...+++|+.|++++ |.+.+. +. +..+++|+.|++++|.++.++. +..+
T Consensus 127 -~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~--N~l~~~-~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l 199 (291)
T 1h6t_A 127 -I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLED--NQISDI-VP-LAGLTKLQNLYLSKNHISDLRA-LAGL 199 (291)
T ss_dssp -C-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS--SCCCCC-GG-GTTCTTCCEEECCSSCCCBCGG-GTTC
T ss_pred -C-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccC--Cccccc-hh-hcCCCccCEEECCCCcCCCChh-hccC
Confidence 3 46889999999999998776541 13567788999998 566653 33 8999999999999999998875 8899
Q ss_pred CCcceecccCccccc
Q 041505 164 SKLGRLYLRYWERLQ 178 (248)
Q Consensus 164 ~~L~~L~l~~n~~~~ 178 (248)
++|+.|++++|++..
T Consensus 200 ~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 200 KNLDVLELFSQECLN 214 (291)
T ss_dssp TTCSEEEEEEEEEEC
T ss_pred CCCCEEECcCCcccC
Confidence 999999999997643
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=4.8e-16 Score=119.34 Aligned_cols=169 Identities=18% Similarity=0.122 Sum_probs=124.8
Q ss_pred cEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCcc
Q 041505 26 VVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCS 105 (248)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 105 (248)
+.++.+++. ...+|..+ .++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~-l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQG-RTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSC-CSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCC-ccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 567777765 56666544 3589999998887654444567899999999999987765555557889999999999987
Q ss_pred CCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-hhhccCCcceecccCccccccCC
Q 041505 106 NLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLYLRYWERLQSLP 181 (248)
Q Consensus 106 ~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~l~~n~~~~~l~ 181 (248)
+.+..+. .+.++++|+++. |.+.+..+..++.+++|+.|++++|.++.++. .+..+++|++|++++|.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNT--NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CCccCHhHhcCccCCCEEEcCC--CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 7654443 355677888888 66665455568899999999999999987775 47889999999999996543
Q ss_pred CCCcccceeccccccccccch
Q 041505 182 KLPCKLHELDAHHCTALESLS 202 (248)
Q Consensus 182 ~~~~~L~~L~l~~~~~l~~~~ 202 (248)
..+.|+.|+++.+.....++
T Consensus 163 -~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 163 -TCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp -CTTTTHHHHHHHHHCTTTBB
T ss_pred -CCCCHHHHHHHHHhCCceee
Confidence 23466777666553333333
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=4.3e-16 Score=136.40 Aligned_cols=179 Identities=25% Similarity=0.259 Sum_probs=134.7
Q ss_pred chhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcC
Q 041505 5 VDDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLN 84 (248)
Q Consensus 5 ~~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 84 (248)
++++.+.+..+|..+ +++|++|++++|. +..+| -.+++|++|++++|.+.. +|. +.+ +|++|++++|.+.+
T Consensus 64 L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 64 LQLNRLNLSSLPDNL--PPQITVLEITQNA-LISLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp EECCSSCCSCCCSCC--CTTCSEEECCSSC-CSCCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred EEeCCCCCCccCHhH--cCCCCEEECcCCC-Ccccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence 344556677777655 3789999999998 55777 347899999997776554 777 554 99999999986655
Q ss_pred cCCccccCCCCCcEEeccCccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccC
Q 041505 85 SLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLS 164 (248)
Q Consensus 85 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~ 164 (248)
+|. .+++|++|++++|.+.+ +|..+++|+.|++++ |.+.+ +|. +. ++|+.|++++|.++.+|. +..
T Consensus 135 -lp~---~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~--N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~-- 200 (571)
T 3cvr_A 135 -LPE---LPALLEYINADNNQLTM-LPELPTSLEVLSVRN--NQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV-- 200 (571)
T ss_dssp -CCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCS--SCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC---
T ss_pred -CCC---cCccccEEeCCCCccCc-CCCcCCCcCEEECCC--CCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--
Confidence 666 67899999999977664 777778899999998 66665 666 65 899999999999998887 544
Q ss_pred Cc-------ceecccCccccccCCCC---Ccccceeccccccccccchhhccc
Q 041505 165 KL-------GRLYLRYWERLQSLPKL---PCKLHELDAHHCTALESLSGLFSS 207 (248)
Q Consensus 165 ~L-------~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~~~ 207 (248)
+| +.|++++|.+. .+|.. +++|+.|+++++.-....+..+..
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 77 99999999654 56653 478999999988554544444433
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=3.8e-16 Score=129.38 Aligned_cols=195 Identities=19% Similarity=0.164 Sum_probs=113.3
Q ss_pred cEEEccCCCCCcccCCccccCcccEEEcCCCCCccccC-hhhhcccCCCEEeccCCcCcCcCCc-cccCCCCCcEEec-c
Q 041505 26 VVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELP-SAIECLYKLLHLDLEYCESLNSLPS-GLCKLKLLNYLTL-N 102 (248)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l-~ 102 (248)
+.++-++++ +..+|..+ .+++++|++++|.+ +.+| .+|.++++|++|++++|.+.+.+|. .+..+++++.+.+ .
T Consensus 12 ~~v~C~~~~-Lt~iP~~l-~~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDL-PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTT-CCSCCTTC-CTTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCC-CCccCcCc-CCCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 567777766 67788765 25799999977664 5666 4689999999999999988776664 4678888876554 4
Q ss_pred CccCCcccccc---cCCCCceEecccCCcccccccccccCCCCcCeEEccC-CcCcccch-hhhcc-CCcceecccCccc
Q 041505 103 CCSNLQRLPDE---LGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQK-NNFERIPE-SVIQL-SKLGRLYLRYWER 176 (248)
Q Consensus 103 ~~~~~~~~~~~---~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~-n~l~~lp~-~l~~~-~~L~~L~l~~n~~ 176 (248)
.|++....|.. +++|+.|++.+ |.+....+..+....++..+++.+ +.++.++. .+..+ ..++.|++++|.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~--n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISN--TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEE--ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred CCcccccCchhhhhccccccccccc--cccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 44444443444 45677888877 444432333344444555555543 34444442 23333 3455566665543
Q ss_pred cccCCC-C--CcccceeccccccccccchhhcccccccccccccccccCcchhch
Q 041505 177 LQSLPK-L--PCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 177 ~~~l~~-~--~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~ 228 (248)
. .++. . ..+|+++++.++..++.++.. .+..+++|+.|++++|+|+..+
T Consensus 167 ~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~--~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPND--VFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp C-EECTTSSTTEEEEEEECTTCTTCCCCCTT--TTTTEECCSEEECTTSCCCCCC
T ss_pred c-CCChhhccccchhHHhhccCCcccCCCHH--HhccCcccchhhcCCCCcCccC
Confidence 2 2222 1 134555555554444444321 1233445555555555555443
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=1.4e-15 Score=134.30 Aligned_cols=155 Identities=26% Similarity=0.239 Sum_probs=74.6
Q ss_pred cchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCc
Q 041505 10 LELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPS 88 (248)
Q Consensus 10 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 88 (248)
+.+..++ .+..+++|+.|++++|.+. .++. + .+++|++|++++|.+. .+| .+..+++|++|++++|.+.+ + .
T Consensus 53 n~i~~l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~-l-~ 125 (605)
T 1m9s_A 53 SDIKSVQ-GIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISD-I-N 125 (605)
T ss_dssp CCCCCCT-TGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCCC-C-G
T ss_pred CCCCCCh-HHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCCC-C-c
Confidence 3344443 3455555555555555422 2222 3 5555555555444332 223 35555555555555544332 2 2
Q ss_pred cccCCCCCcEEeccCccCCccc-ccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcc
Q 041505 89 GLCKLKLLNYLTLNCCSNLQRL-PDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLG 167 (248)
Q Consensus 89 ~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~ 167 (248)
.+..+++|+.|++++|.+.+.- ...+++|+.|+++. |.+.+..| +..+++|+.|++++|.++.+| .+..+++|+
T Consensus 126 ~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~--N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~ 200 (605)
T 1m9s_A 126 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLED--NQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLD 200 (605)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCS--SCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCS
T ss_pred cccCCCccCEEECCCCccCCchhhcccCCCCEEECcC--CcCCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCCCC
Confidence 3555555555555555443320 11334445555555 33433222 555555555555555555543 345555555
Q ss_pred eecccCccc
Q 041505 168 RLYLRYWER 176 (248)
Q Consensus 168 ~L~l~~n~~ 176 (248)
.|++++|.+
T Consensus 201 ~L~L~~N~l 209 (605)
T 1m9s_A 201 VLELFSQEC 209 (605)
T ss_dssp EEECCSEEE
T ss_pred EEEccCCcC
Confidence 555555544
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=5.6e-16 Score=128.90 Aligned_cols=166 Identities=21% Similarity=0.155 Sum_probs=106.5
Q ss_pred hhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc--ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCc
Q 041505 6 DDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI--HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 6 ~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
+.+.+.++.+|..+. ..++.|++++|.+.+..+..+ .+++|++|++++|.+....+..+.++++|++|++++|.+.
T Consensus 24 ~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 24 SCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101 (361)
T ss_dssp ECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC
Confidence 334455666665442 457788888877444333334 6778888888666655444456778888888888887665
Q ss_pred CcCCccccCCCCCcEEeccCccCCcccccc---cCCCCceEecccCCccccccccc-c---cCCCCcCeEEccCCcCccc
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNLQRLPDE---LGNLEALWISREAGVISRWLPEN-I---GQLSSLGKLDLQKNNFERI 156 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~l~~L~l~~~~n~~~~~~~~~-l---~~~~~L~~L~l~~n~l~~l 156 (248)
...+..+..+++|++|++++|.+.+..|.. +.+|+.|++++ |.+.. +|.. + ..+++|+.|++++|+++.+
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~--N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ--NQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--SCCCS-CCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC--CcCCe-eCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 555556777888888888887766544443 34556777777 44553 3433 3 5677788888888887777
Q ss_pred ch-hhhccCC--cceecccCccc
Q 041505 157 PE-SVIQLSK--LGRLYLRYWER 176 (248)
Q Consensus 157 p~-~l~~~~~--L~~L~l~~n~~ 176 (248)
|. .+..++. ++.|++.+|++
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCE
T ss_pred CHHHhhhccHhhcceEEecCCCc
Confidence 63 5566665 36677777653
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=2.5e-15 Score=117.13 Aligned_cols=147 Identities=16% Similarity=0.034 Sum_probs=112.2
Q ss_pred cCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCccccc---ccCCCCceE
Q 041505 45 LEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPD---ELGNLEALW 121 (248)
Q Consensus 45 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~ 121 (248)
....+.++.++ +....+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+....+. .+++|+.|+
T Consensus 18 ~Cs~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 18 SCSGTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp EEETTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEeCCEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 34577889844 44567776443 8999999999988887788899999999999999877543333 455677888
Q ss_pred ecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCccccccCCC---CCcccceecccccc
Q 041505 122 ISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSLPK---LPCKLHELDAHHCT 196 (248)
Q Consensus 122 l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~~ 196 (248)
+++ |.+....+..+..+++|+.|++++|+++.+|..+..+++|++|++++|.+....+. .+++|+.|++++++
T Consensus 95 Ls~--N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 95 LGT--NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCC--CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 988 66765455567899999999999999999998889999999999999965432222 23667777776653
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=1.1e-15 Score=134.98 Aligned_cols=165 Identities=23% Similarity=0.244 Sum_probs=131.1
Q ss_pred hcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCc
Q 041505 19 KQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLN 97 (248)
Q Consensus 19 l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 97 (248)
+..+.+|+.|++++|. +..++. + .+++|+.|++++|.+.. ++. +..+++|++|++++|.+.+ +| .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 4567889999999987 666664 5 89999999997777544 444 8999999999999986543 44 688999999
Q ss_pred EEeccCccCCcccc--cccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCcc
Q 041505 98 YLTLNCCSNLQRLP--DELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWE 175 (248)
Q Consensus 98 ~L~l~~~~~~~~~~--~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~ 175 (248)
.|++++|.+.+ ++ ..+++|+.|+++. |.+.+ + ..++.+++|+.|++++|.++.++. +..+++|+.|++++|.
T Consensus 113 ~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~--N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISD-INGLVHLPQLESLYLGN--NKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCC-CGGGGGCTTCSEEECCS--SCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCC-CccccCCCccCEEECCC--CccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC
Confidence 99999987764 33 2566788999988 55664 3 678899999999999999987766 8899999999999996
Q ss_pred ccccCCC--CCcccceecccccc
Q 041505 176 RLQSLPK--LPCKLHELDAHHCT 196 (248)
Q Consensus 176 ~~~~l~~--~~~~L~~L~l~~~~ 196 (248)
+. .++. .+++|+.|++++|.
T Consensus 187 i~-~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 187 IS-DLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CC-BCGGGTTCTTCSEEECCSEE
T ss_pred CC-CChHHccCCCCCEEEccCCc
Confidence 54 3343 34788999988774
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=1.4e-15 Score=120.99 Aligned_cols=157 Identities=24% Similarity=0.221 Sum_probs=107.5
Q ss_pred hhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCc
Q 041505 7 DHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNS 85 (248)
Q Consensus 7 ~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 85 (248)
++.+.+.+++ .+..+++|++|++++|. +..++ .+ .+++|++|++++|.+ ..++. +.++++|++|++++|.+.+
T Consensus 26 l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~~N~l~~- 99 (263)
T 1xeu_A 26 LGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVNRNRLKN- 99 (263)
T ss_dssp HTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEECCSSCCSC-
T ss_pred hcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEECCCCccCC-
Confidence 3445555555 45667888888888876 55566 45 788888888866654 44454 7788888888888865443
Q ss_pred CCccccCCCCCcEEeccCccCCcccc--cccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhcc
Q 041505 86 LPSGLCKLKLLNYLTLNCCSNLQRLP--DELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQL 163 (248)
Q Consensus 86 ~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~ 163 (248)
+|.. .. ++|++|++++|.+.+ ++ ..+++++.|++++ |.+.+ ++ .++.+++|+.|++++|.++.+ ..+..+
T Consensus 100 l~~~-~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~--N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l 171 (263)
T 1xeu_A 100 LNGI-PS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRN--NKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRL 171 (263)
T ss_dssp CTTC-CC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTT--SCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTC
T ss_pred cCcc-cc-CcccEEEccCCccCC-ChhhcCcccccEEECCC--CcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccC
Confidence 4442 23 788888888876654 33 2455666777777 55553 33 577788888888888888766 567778
Q ss_pred CCcceecccCcccc
Q 041505 164 SKLGRLYLRYWERL 177 (248)
Q Consensus 164 ~~L~~L~l~~n~~~ 177 (248)
++|+.|++++|.+.
T Consensus 172 ~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 172 KKVNWIDLTGQKCV 185 (263)
T ss_dssp CCCCEEEEEEEEEE
T ss_pred CCCCEEeCCCCccc
Confidence 88888888887654
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=3.9e-16 Score=118.88 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=115.6
Q ss_pred hhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcC
Q 041505 6 DDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLN 84 (248)
Q Consensus 6 ~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 84 (248)
+++.+.+..++ .+..+++|++|++++|. +..++ .+ .+++|++|++++|.+....+..+..+++|++|++++|.+.+
T Consensus 50 ~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 50 TLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp EEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred eccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 44556777777 68889999999999995 55444 45 89999999998888777678889999999999999998888
Q ss_pred cCCccccCCCCCcEEeccCccCCccccc--ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCc
Q 041505 85 SLPSGLCKLKLLNYLTLNCCSNLQRLPD--ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFE 154 (248)
Q Consensus 85 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 154 (248)
..|..++.+++|++|++++|...+.+|. .+++|+.|++++ |.+.+ ++ .+..+++|+.|++++|.++
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~--n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQF--DGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTT--BCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred HhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCC--CCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 7888899999999999999875666653 566788999998 55554 44 7889999999999999875
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=5.9e-16 Score=123.24 Aligned_cols=163 Identities=20% Similarity=0.149 Sum_probs=128.8
Q ss_pred CCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEe
Q 041505 22 NPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLT 100 (248)
Q Consensus 22 l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 100 (248)
+.++..++++++. +..++ .+ .+++|++|++++|. +..+| .+..+++|++|++++|.+.+ ++. +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEE
Confidence 5667788899887 55555 45 89999999997775 45666 58999999999999986554 444 88999999999
Q ss_pred ccCccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCccccccC
Q 041505 101 LNCCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQSL 180 (248)
Q Consensus 101 l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~l 180 (248)
+++|.+.+.-+....+++.|++++ |.+.+ + +.++.+++|+.|++++|+++.++ .+..+++|++|++++|.+...
T Consensus 92 L~~N~l~~l~~~~~~~L~~L~L~~--N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 92 VNRNRLKNLNGIPSACLSRLFLDN--NELRD-T-DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CCSSCCSCCTTCCCSSCCEEECCS--SCCSB-S-GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCCccCCcCccccCcccEEEccC--CccCC-C-hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-
Confidence 999877652222227888999999 55664 3 46899999999999999999886 688999999999999976543
Q ss_pred CC--CCcccceecccccc
Q 041505 181 PK--LPCKLHELDAHHCT 196 (248)
Q Consensus 181 ~~--~~~~L~~L~l~~~~ 196 (248)
+. .+++|+.|+++++.
T Consensus 166 ~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTSTTCCCCCEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCc
Confidence 32 34789999998763
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.6e-15 Score=112.47 Aligned_cols=133 Identities=25% Similarity=0.176 Sum_probs=99.6
Q ss_pred cCCCCccEEEccCCCCC-cccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCc
Q 041505 20 QNNPHIVVLNLRDCKSL-KSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLN 97 (248)
Q Consensus 20 ~~l~~L~~L~l~~~~~~-~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 97 (248)
...++|+.|++++|.+. +.+|..+ .+++|++|++++|.+. .+ ..+..+++|++|++++|.+.+.+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34578888888888854 4777777 7888888888777644 33 5577888888888888777666676666688888
Q ss_pred EEeccCccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch----hhhccCCcceecccC
Q 041505 98 YLTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE----SVIQLSKLGRLYLRY 173 (248)
Q Consensus 98 ~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~----~l~~~~~L~~L~l~~ 173 (248)
+|++++|.+.+. . .+..++.+++|+.|++++|.++.+|. .+..+++|++|+++.
T Consensus 99 ~L~Ls~N~l~~~--------------------~--~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 99 HLNLSGNKLKDI--------------------S--TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EEECBSSSCCSS--------------------G--GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred EEeccCCccCcc--------------------h--hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 888887543210 0 12567788899999999999987775 678889999999988
Q ss_pred ccc
Q 041505 174 WER 176 (248)
Q Consensus 174 n~~ 176 (248)
|..
T Consensus 157 n~~ 159 (168)
T 2ell_A 157 RED 159 (168)
T ss_dssp TTS
T ss_pred CCh
Confidence 853
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=7.7e-15 Score=113.66 Aligned_cols=144 Identities=17% Similarity=0.130 Sum_probs=106.5
Q ss_pred ccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCccccccc---CCCCceEecc
Q 041505 48 LKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPDEL---GNLEALWISR 124 (248)
Q Consensus 48 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~l~~ 124 (248)
-+.++.+++ ....+|..+. +++++|++++|.+....+..+..+++|++|++++|.+.+..|..+ .+|+.|++++
T Consensus 13 ~~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 13 NNIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CCEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 357888544 4566776543 789999999987776666678999999999999988776656544 4566888888
Q ss_pred cCCcccccccccccCCCCcCeEEccCCcCccc-chhhhccCCcceecccCccccccCCC---CCcccceecccccc
Q 041505 125 EAGVISRWLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLYLRYWERLQSLPK---LPCKLHELDAHHCT 196 (248)
Q Consensus 125 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~~~~L~~L~l~~n~~~~~l~~---~~~~L~~L~l~~~~ 196 (248)
|.+....+..+..+++|+.|++++|+++.+ |..+..+++|++|++++|.+....+. .+++|++|++++++
T Consensus 90 --N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 90 --NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp --SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 566643344578889999999999998776 45788889999999999876543332 23667777777653
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=1.3e-15 Score=110.68 Aligned_cols=128 Identities=21% Similarity=0.128 Sum_probs=97.2
Q ss_pred CCCCccEEEccCCCCC-cccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcE
Q 041505 21 NNPHIVVLNLRDCKSL-KSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNY 98 (248)
Q Consensus 21 ~l~~L~~L~l~~~~~~-~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 98 (248)
..++++.|++++|.+. +.+|..+ .+++|++|++++|.+.. + ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3477889999998855 4777777 88889999987776544 3 55778888888888887776667776767888888
Q ss_pred EeccCccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch----hhhccCCcceeccc
Q 041505 99 LTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE----SVIQLSKLGRLYLR 172 (248)
Q Consensus 99 L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~----~l~~~~~L~~L~l~ 172 (248)
|++++|.+.+ . ..+..++.+++|+.|++++|.++.+|. .+..+++|++|+++
T Consensus 93 L~ls~N~i~~--------------------~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKD--------------------L--STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCS--------------------H--HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCC--------------------h--HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888754321 0 123567888999999999999987765 67889999999875
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=1e-14 Score=113.02 Aligned_cols=144 Identities=17% Similarity=0.101 Sum_probs=106.0
Q ss_pred ccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCC-ccccCCCCCcEEeccCccCCcccccc---cCCCCceEec
Q 041505 48 LKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLP-SGLCKLKLLNYLTLNCCSNLQRLPDE---LGNLEALWIS 123 (248)
Q Consensus 48 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~l~~L~l~ 123 (248)
-+.++++++. ++.+|..+ .+.+++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+.. +.+++.|+++
T Consensus 13 ~~~l~~s~n~-l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQK-LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCC-cccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 4689996555 45677644 3457899999987766544 34788999999999998776555443 4456688888
Q ss_pred ccCCcccccccccccCCCCcCeEEccCCcCccc-chhhhccCCcceecccCccccccCCCC---Ccccceecccccc
Q 041505 124 REAGVISRWLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLYLRYWERLQSLPKL---PCKLHELDAHHCT 196 (248)
Q Consensus 124 ~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~~~~L~~L~l~~n~~~~~l~~~---~~~L~~L~l~~~~ 196 (248)
+ |.+.+..+..++.+++|+.|++++|+++.+ |..+..+++|++|++++|.+....|.. +++|++|++++++
T Consensus 90 ~--N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 S--NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp S--SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred C--CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 8 667665666788889999999999988766 567888889999999888765544443 3567777777653
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=3.3e-15 Score=124.24 Aligned_cols=148 Identities=21% Similarity=0.144 Sum_probs=115.7
Q ss_pred cEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhh-cccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCc
Q 041505 26 VVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIE-CLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCC 104 (248)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 104 (248)
+.++.+++. +..+|..+ ...++.|++++|.+....+..+. ++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~-l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSC-CSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCC-cCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 689999986 77788765 23589999988776554455566 8999999999998777666677999999999999998
Q ss_pred cCCccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhh----hccCCcceecccCcccc
Q 041505 105 SNLQRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESV----IQLSKLGRLYLRYWERL 177 (248)
Q Consensus 105 ~~~~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l----~~~~~L~~L~l~~n~~~ 177 (248)
.+....+. .+.+|+.|++++ |.+....+..+..+++|+.|++++|+++.+|..+ ..+++|+.|++++|.+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~--N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYN--NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCC--CcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 77654443 455677888888 6676656778899999999999999998888654 56889999999988643
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=4.1e-17 Score=143.15 Aligned_cols=164 Identities=19% Similarity=0.142 Sum_probs=84.5
Q ss_pred hhhccchHhhhhhhcCCCCccEEEccCCC-------------CCcccCCcc-ccCcccEEE-cCCCCCccccCh------
Q 041505 6 DDHALELFSLYAFKQNNPHIVVLNLRDCK-------------SLKSLPAGI-HLEFLKELD-LLNGTAIEELPS------ 64 (248)
Q Consensus 6 ~~~~~~l~~l~~~l~~l~~L~~L~l~~~~-------------~~~~~~~~~-~l~~L~~L~-l~~~~~~~~~~~------ 64 (248)
+++.+.++.+|..++.+++|+.|++++|. ..+..|..+ .+++|+.|+ ++.+. ...++.
T Consensus 355 ~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~L~~l~l~~n 433 (567)
T 1dce_A 355 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDDLRSKFLLEN 433 (567)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHH
T ss_pred cCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cchhhhhhhhcc
Confidence 34455556666666666666666665442 233334444 555555555 32221 111111
Q ss_pred hhhc--ccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCcccccccC---CCCceEecccCCcccccccccccC
Q 041505 65 AIEC--LYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPDELG---NLEALWISREAGVISRWLPENIGQ 139 (248)
Q Consensus 65 ~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~l~~L~l~~~~n~~~~~~~~~l~~ 139 (248)
.+.. ...|++|++++|.+. .+|. ++.+++|+.|++++|.+. .+|..++ +|+.|++++ |.+.+ +| .++.
T Consensus 434 ~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~--N~l~~-lp-~l~~ 506 (567)
T 1dce_A 434 SVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD--NALEN-VD-GVAN 506 (567)
T ss_dssp HHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS--SCCCC-CG-GGTT
T ss_pred cccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC--CCCCC-Cc-ccCC
Confidence 1111 124666666665433 3454 666666666666665544 4554333 344555555 44443 44 5666
Q ss_pred CCCcCeEEccCCcCccc--chhhhccCCcceecccCcccc
Q 041505 140 LSSLGKLDLQKNNFERI--PESVIQLSKLGRLYLRYWERL 177 (248)
Q Consensus 140 ~~~L~~L~l~~n~l~~l--p~~l~~~~~L~~L~l~~n~~~ 177 (248)
+++|+.|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 507 l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 66666666666666555 556666666666666666543
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=1.1e-14 Score=110.45 Aligned_cols=125 Identities=22% Similarity=0.193 Sum_probs=82.5
Q ss_pred cEEEccCCCCCcccCCccccCcccEEEcCCCCCccccCh-hhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCc
Q 041505 26 VVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPS-AIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCC 104 (248)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 104 (248)
+.++++++. ++.+|..+. ..+++|++++|.+....+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~-l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSC-CSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCC-cCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 678888876 577776552 2788888866665433332 3788888888888888777777778888888888888886
Q ss_pred cCCcccccc---cCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCc
Q 041505 105 SNLQRLPDE---LGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFE 154 (248)
Q Consensus 105 ~~~~~~~~~---~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 154 (248)
.+.+..+.. +++|+.|++++ |.+.+..|..++.+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYD--NQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCS--SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCC--CcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 665443332 23344555555 4454444555666666666666666654
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=3e-15 Score=135.05 Aligned_cols=149 Identities=23% Similarity=0.211 Sum_probs=98.8
Q ss_pred ccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCcccccccC-
Q 041505 38 SLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPDELG- 115 (248)
Q Consensus 38 ~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~- 115 (248)
..+..+ .++.|+.|++++|.+ ..+|..+.++++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 335555 788888888866664 477777778888888888887655 78888888888888888887766 6676544
Q ss_pred --CCCceEecccCCcccccccccccCCCCcCeEEccCCcCc-ccchhhhccC-CcceecccCccccccCCCCCcccceec
Q 041505 116 --NLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFE-RIPESVIQLS-KLGRLYLRYWERLQSLPKLPCKLHELD 191 (248)
Q Consensus 116 --~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~-~lp~~l~~~~-~L~~L~l~~n~~~~~l~~~~~~L~~L~ 191 (248)
+|+.|+++. |.+. .+|..++.+++|+.|++++|.++ .+|..+.... ....+++.+|.+...+| ..|+.|+
T Consensus 292 l~~L~~L~L~~--N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p---~~l~~l~ 365 (727)
T 4b8c_D 292 CFQLKYFYFFD--NMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP---HERRFIE 365 (727)
T ss_dssp GTTCSEEECCS--SCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CC-----
T ss_pred CCCCCEEECCC--CCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc---cccceeE
Confidence 556777777 5554 58888999999999999999996 4455554432 22346788887665555 4456666
Q ss_pred cccc
Q 041505 192 AHHC 195 (248)
Q Consensus 192 l~~~ 195 (248)
++.+
T Consensus 366 l~~n 369 (727)
T 4b8c_D 366 INTD 369 (727)
T ss_dssp ----
T ss_pred eecc
Confidence 6554
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=3.5e-14 Score=107.63 Aligned_cols=125 Identities=20% Similarity=0.133 Sum_probs=100.1
Q ss_pred ccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCc-cccCCCCCcEEeccCccCCccccccc---CCCCceEec
Q 041505 48 LKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPS-GLCKLKLLNYLTLNCCSNLQRLPDEL---GNLEALWIS 123 (248)
Q Consensus 48 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~l~ 123 (248)
-++++++++.+ +.+|..+. +++++|++++|.+.+..+. .++.+++|++|++++|.+.+..|..+ .++++|+++
T Consensus 10 ~~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 47899966654 67786553 3899999999876555544 38899999999999988887767655 456688888
Q ss_pred ccCCcccccccccccCCCCcCeEEccCCcCccc-chhhhccCCcceecccCcccc
Q 041505 124 REAGVISRWLPENIGQLSSLGKLDLQKNNFERI-PESVIQLSKLGRLYLRYWERL 177 (248)
Q Consensus 124 ~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~l-p~~l~~~~~L~~L~l~~n~~~ 177 (248)
+ |.+.+..+..++++++|+.|++++|+++.+ |..+..+++|++|++++|.+.
T Consensus 87 ~--N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 E--NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp S--CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred C--CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8 677766667799999999999999999765 668889999999999999764
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=9.8e-14 Score=105.25 Aligned_cols=125 Identities=24% Similarity=0.223 Sum_probs=86.5
Q ss_pred cEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCcc
Q 041505 26 VVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCS 105 (248)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 105 (248)
++++++++. +..+|..+ .+.|++|++++|.+ ..+|..+.++++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~-l~~ip~~~-~~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGI-PRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSC-CSSCCSCC-CTTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCC-CCcCCCCC-CCCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 578888876 66777655 25788999966654 5778888889999999999887776666778888899999888865
Q ss_pred CCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-hhhccCCcceecccCccc
Q 041505 106 NLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLYLRYWER 176 (248)
Q Consensus 106 ~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~l~~n~~ 176 (248)
+.+. .+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|++
T Consensus 90 l~~i-----------------------~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCI-----------------------PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBC-----------------------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEe-----------------------CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 4322 23345555666666666666655554 355566666666666543
No 120
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=1.8e-15 Score=133.47 Aligned_cols=172 Identities=16% Similarity=0.012 Sum_probs=92.5
Q ss_pred hcCCCCccEEEccCCCCCcc----cCCcc-ccCcccEEEcCCCCCc----cccChhhhcccCCCEEeccCCcCcCcCCcc
Q 041505 19 KQNNPHIVVLNLRDCKSLKS----LPAGI-HLEFLKELDLLNGTAI----EELPSAIECLYKLLHLDLEYCESLNSLPSG 89 (248)
Q Consensus 19 l~~l~~L~~L~l~~~~~~~~----~~~~~-~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 89 (248)
...+++|++|++++|.+.+. ++... .++.|++|++++|... ..++..+.++++|++|++++|... .+|..
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~ 238 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGF 238 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHH
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHH
Confidence 34567777777777753332 22222 5677777777666553 234455566777777777775433 35555
Q ss_pred ccCCCCCcEEeccCccCC---ccccc---ccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCc--ccchhhh
Q 041505 90 LCKLKLLNYLTLNCCSNL---QRLPD---ELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFE--RIPESVI 161 (248)
Q Consensus 90 l~~l~~L~~L~l~~~~~~---~~~~~---~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~--~lp~~l~ 161 (248)
+..+++|+.|+++..... ...+. ...+++.+++..+ ....+|..+..+++|+.|++++|.++ .++..+.
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~ 315 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM---GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC---CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc---chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH
Confidence 666677777776542221 11111 2234445555442 22235556666777777777777653 2223455
Q ss_pred ccCCcceecccCccccccCC---CCCcccceecccc
Q 041505 162 QLSKLGRLYLRYWERLQSLP---KLPCKLHELDAHH 194 (248)
Q Consensus 162 ~~~~L~~L~l~~n~~~~~l~---~~~~~L~~L~l~~ 194 (248)
.+++|++|++..+-....++ ...++|++|++++
T Consensus 316 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 316 KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp TCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred hCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 66777777666331111111 1235566666663
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=2.6e-14 Score=103.74 Aligned_cols=123 Identities=25% Similarity=0.171 Sum_probs=83.5
Q ss_pred cCcccEEEcCCCCCc-cccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCcccccccCCCCceEec
Q 041505 45 LEFLKELDLLNGTAI-EELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWIS 123 (248)
Q Consensus 45 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~ 123 (248)
.+++++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n------------------- 74 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDN------------------- 74 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSS-------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCC-------------------
Confidence 356777777666654 35666666777777777777654433 45666677777777664
Q ss_pred ccCCcccccccccccCCCCcCeEEccCCcCcccc--hhhhccCCcceecccCccccccCCC-------CCcccceeccc
Q 041505 124 REAGVISRWLPENIGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLYLRYWERLQSLPK-------LPCKLHELDAH 193 (248)
Q Consensus 124 ~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp--~~l~~~~~L~~L~l~~n~~~~~l~~-------~~~~L~~L~l~ 193 (248)
.+.+.+|..++.+++|+.|++++|.++.+| ..+..+++|++|++++|.+.. .+. .+++|+.|+++
T Consensus 75 ----~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 75 ----RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ----CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTB
T ss_pred ----cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCC
Confidence 333335666777889999999999998765 678889999999999986543 332 13556666554
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=4.7e-14 Score=104.48 Aligned_cols=126 Identities=26% Similarity=0.168 Sum_probs=83.9
Q ss_pred cCcccEEEcCCCCCc-cccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCcccccccCCCCceEec
Q 041505 45 LEFLKELDLLNGTAI-EELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWIS 123 (248)
Q Consensus 45 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~ 123 (248)
.+.|++|++++|.+. ..+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~------------------ 82 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENR------------------ 82 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCC------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCc------------------
Confidence 356777777666544 35666667777777777777654433 556666777777776643
Q ss_pred ccCCcccccccccccCCCCcCeEEccCCcCcccc--hhhhccCCcceecccCccccccCC------CCCcccceeccccc
Q 041505 124 REAGVISRWLPENIGQLSSLGKLDLQKNNFERIP--ESVIQLSKLGRLYLRYWERLQSLP------KLPCKLHELDAHHC 195 (248)
Q Consensus 124 ~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp--~~l~~~~~L~~L~l~~n~~~~~l~------~~~~~L~~L~l~~~ 195 (248)
+.+.+|..++.+++|+.|++++|.++.+| ..+..+++|++|++++|.+....+ ..+++|++|++++|
T Consensus 83 -----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 83 -----IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp -----CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred -----CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 33335566667889999999999998776 678888999999999886543222 12355666666655
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=3.3e-14 Score=106.23 Aligned_cols=130 Identities=18% Similarity=0.124 Sum_probs=92.6
Q ss_pred hcCCCCccEEEccCCCCCcccCCcccc-CcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCcc-ccCCCCC
Q 041505 19 KQNNPHIVVLNLRDCKSLKSLPAGIHL-EFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSG-LCKLKLL 96 (248)
Q Consensus 19 l~~l~~L~~L~l~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L 96 (248)
+..+.+|+.|++++|. +..++....+ ++|++|++++|.+.. + ..+..+++|++|++++|.+.+ +|.. +..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccc-cCcchhhcCCCC
Confidence 4567788888888887 4455543344 488888887766543 3 457778888888888876543 4433 4677888
Q ss_pred cEEeccCccCCcccccccCCCCceEecccCCcccccccc--cccCCCCcCeEEccCCcCcccchh----hhccCCcceec
Q 041505 97 NYLTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPE--NIGQLSSLGKLDLQKNNFERIPES----VIQLSKLGRLY 170 (248)
Q Consensus 97 ~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~--~l~~~~~L~~L~l~~n~l~~lp~~----l~~~~~L~~L~ 170 (248)
++|++++|.+. .+|. .++.+++|+.|++++|.++.+|.. +..+++|+.|+
T Consensus 91 ~~L~L~~N~i~------------------------~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 91 TELILTNNSLV------------------------ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp CEEECCSCCCC------------------------CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred CEEECCCCcCC------------------------cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeC
Confidence 88888775431 1333 577788899999999999888764 78889999999
Q ss_pred ccCccc
Q 041505 171 LRYWER 176 (248)
Q Consensus 171 l~~n~~ 176 (248)
++.|..
T Consensus 147 ~~~n~~ 152 (176)
T 1a9n_A 147 FQKVKL 152 (176)
T ss_dssp TEECCH
T ss_pred CCcCCH
Confidence 888754
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=4.2e-15 Score=134.05 Aligned_cols=156 Identities=19% Similarity=0.143 Sum_probs=96.3
Q ss_pred CCccEEEccCCCCCcccCCcc-ccCcccEEEcCC----CCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCc
Q 041505 23 PHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLN----GTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLN 97 (248)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~----~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 97 (248)
+.++.|++.+|. +...+... ....|+.+.+.. ++.....|..+..++.|+.|++++|.+. .+|..++.+++|+
T Consensus 173 ~~~~~l~L~~n~-~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANG-KDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred CccceEEeeCCC-CCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence 568889998877 54455544 444444444322 2223344677899999999999997654 8888888999999
Q ss_pred EEeccCccCCccccccc---CCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchhhhccCCcceecccCc
Q 041505 98 YLTLNCCSNLQRLPDEL---GNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYW 174 (248)
Q Consensus 98 ~L~l~~~~~~~~~~~~~---~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n 174 (248)
+|++++|.+. .+|..+ .+|+.|++++ |.+. .+|..++.+++|+.|++++|.++.+|..++.+++|++|++++|
T Consensus 251 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~--N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 251 RLYLNGNSLT-ELPAEIKNLSNLRVLDLSH--NRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CCBCTTSCCS-CCCGGGGGGTTCCEEECTT--SCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred EEEeeCCcCc-ccChhhhCCCCCCEEeCcC--CcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence 9999998776 778754 4667888988 6666 6899999999999999999999999988999999999999999
Q ss_pred cccccCCCCC
Q 041505 175 ERLQSLPKLP 184 (248)
Q Consensus 175 ~~~~~l~~~~ 184 (248)
.+....|..+
T Consensus 327 ~l~~~~p~~~ 336 (727)
T 4b8c_D 327 PLEKQFLKIL 336 (727)
T ss_dssp CCCSHHHHHH
T ss_pred ccCCCChHHH
Confidence 8766655543
No 125
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=9.5e-15 Score=128.78 Aligned_cols=172 Identities=15% Similarity=0.012 Sum_probs=98.1
Q ss_pred cCCCCccEEEccCCCCCcccCCcc-c-cCc-ccEEEcCCCCCcc--ccChhhhcccCCCEEeccCCcCcCc----CCccc
Q 041505 20 QNNPHIVVLNLRDCKSLKSLPAGI-H-LEF-LKELDLLNGTAIE--ELPSAIECLYKLLHLDLEYCESLNS----LPSGL 90 (248)
Q Consensus 20 ~~l~~L~~L~l~~~~~~~~~~~~~-~-l~~-L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l 90 (248)
..+++|++|++++|.+.+..+..+ . ++. |++|++++|.... .++..+.++++|++|++++|.+.+. ++..+
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 367788888888876554444444 2 344 7777776665322 1233344677777777777654333 22223
Q ss_pred cCCCCCcEEeccCccCCc----ccc---cccCCCCceEecccCCccc--------------------------ccccccc
Q 041505 91 CKLKLLNYLTLNCCSNLQ----RLP---DELGNLEALWISREAGVIS--------------------------RWLPENI 137 (248)
Q Consensus 91 ~~l~~L~~L~l~~~~~~~----~~~---~~~~~l~~L~l~~~~n~~~--------------------------~~~~~~l 137 (248)
..+++|++|++++|...+ .++ ...++|+.|++..+ ... ...+..+
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF--EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC--BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc--cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 345666666666655431 111 13345555555552 121 1233345
Q ss_pred cCCCCcCeEEccCCcCcccchhhhccCCcceecccCcccccc-C---CCCCcccceeccc
Q 041505 138 GQLSSLGKLDLQKNNFERIPESVIQLSKLGRLYLRYWERLQS-L---PKLPCKLHELDAH 193 (248)
Q Consensus 138 ~~~~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~l~~n~~~~~-l---~~~~~~L~~L~l~ 193 (248)
..+++|+.++++++....+|..+..+++|++|++++|.+... + ...+++|++|+++
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 556666666666655566777777888999999988873221 1 1345788888875
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=1.4e-13 Score=104.42 Aligned_cols=124 Identities=21% Similarity=0.151 Sum_probs=99.6
Q ss_pred chhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCc
Q 041505 5 VDDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 5 ~~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
++.+.+.+..+|..+ .+++++|++++|. +..+|..+ .+++|++|++++|.+....+..|.++++|++|++++|.+.
T Consensus 15 l~~~~~~l~~ip~~~--~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGI--PRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EECTTSCCSSCCSCC--CTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEcCCCCCCcCCCCC--CCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 455667788888654 3689999999998 66888777 8999999999888776655677999999999999999887
Q ss_pred CcCCccccCCCCCcEEeccCccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCc
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFE 154 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 154 (248)
+..+..+..+++|++|++++|.+. ...+..+..+++|+.|++++|.+.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDIS-----------------------VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCC-----------------------BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCC-----------------------eeChhhhhcCccccEEEeCCCCee
Confidence 777778999999999999986443 112234667788899999998874
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=2.9e-13 Score=118.76 Aligned_cols=118 Identities=20% Similarity=0.206 Sum_probs=65.5
Q ss_pred ccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCccccc--ccCCCCceEeccc
Q 041505 48 LKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPD--ELGNLEALWISRE 125 (248)
Q Consensus 48 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~l~~~ 125 (248)
|++|++++|.+ ..+|. ++.+++|++|++++|.+. .+|..++.+++|++|++++|.+.+ +|. .+++|+.|++++
T Consensus 443 L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~- 517 (567)
T 1dce_A 443 VRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCN- 517 (567)
T ss_dssp CSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCS-
T ss_pred ceEEEecCCCC-CCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCC-
Confidence 44455533332 22343 444555555555544332 444444445555555555444332 331 122333444444
Q ss_pred CCcccccc-cccccCCCCcCeEEccCCcCcccchh----hhccCCcceecc
Q 041505 126 AGVISRWL-PENIGQLSSLGKLDLQKNNFERIPES----VIQLSKLGRLYL 171 (248)
Q Consensus 126 ~n~~~~~~-~~~l~~~~~L~~L~l~~n~l~~lp~~----l~~~~~L~~L~l 171 (248)
|.+.+.. |..++.+++|+.|++++|.++.+|.. +..+++|+.|++
T Consensus 518 -N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 -NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 4555444 78899999999999999999877643 345788888753
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=7.6e-13 Score=98.77 Aligned_cols=126 Identities=20% Similarity=0.195 Sum_probs=70.7
Q ss_pred ccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCc
Q 041505 25 IVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCC 104 (248)
Q Consensus 25 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 104 (248)
.+.++++++. +..+|..+ .+.|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~-l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCC-CccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3567777765 55555433 256777777666544333344677777777777776555444444567777777777775
Q ss_pred cCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccchh-hhccCCcceecccCcc
Q 041505 105 SNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPES-VIQLSKLGRLYLRYWE 175 (248)
Q Consensus 105 ~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~~-l~~~~~L~~L~l~~n~ 175 (248)
.+.+. .+..++.+++|+.|++++|.++.+|.. +..+++|++|++++|+
T Consensus 87 ~l~~~-----------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSL-----------------------PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCC-----------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred Ccccc-----------------------CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 44322 122234455555555555555544432 3445555555555553
No 129
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.45 E-value=1.7e-14 Score=127.23 Aligned_cols=128 Identities=17% Similarity=0.127 Sum_probs=67.2
Q ss_pred cCCCCccEEEccCCCCCcccCCcc--ccCcccEEEcCCCCCccc--cChhhhcccCCCEEeccCCcCcCcCCccc----c
Q 041505 20 QNNPHIVVLNLRDCKSLKSLPAGI--HLEFLKELDLLNGTAIEE--LPSAIECLYKLLHLDLEYCESLNSLPSGL----C 91 (248)
Q Consensus 20 ~~l~~L~~L~l~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~ 91 (248)
..+++|++|++++|.+.+..+..+ .+++|++|++++|...+. ++..+.++++|++|++++|.+.+..+..+ .
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 345667777777766444443333 466777777766643333 34444567777777777665433322222 2
Q ss_pred CCCCCcEEeccCcc--CCcc----cccccCCCCceEecccCCcccccccccccCCCCcCeEEcc
Q 041505 92 KLKLLNYLTLNCCS--NLQR----LPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQ 149 (248)
Q Consensus 92 ~l~~L~~L~l~~~~--~~~~----~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~ 149 (248)
.+++|++|++++|. .... +....++|++|++.++. ... .++..+..+++|+.+++.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~-~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV-PLE-KLATLLQRAPQLEELGTG 243 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS-CHH-HHHHHHHHCTTCSEEECS
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC-cHH-HHHHHHhcCCcceEcccc
Confidence 45567777776654 1100 11123566666666642 122 144455555555555543
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.45 E-value=7.5e-13 Score=98.80 Aligned_cols=125 Identities=20% Similarity=0.054 Sum_probs=93.0
Q ss_pred hhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCc
Q 041505 7 DHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNS 85 (248)
Q Consensus 7 ~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 85 (248)
.+.+.+..+|..+ .++|++|++++|.+.+..+..+ .+++|++|++++|.+....+..+.++++|++|++++|.+.+.
T Consensus 14 ~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 91 (177)
T 2o6r_A 14 CNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91 (177)
T ss_dssp CCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc
Confidence 3455677777544 4799999999998554444455 899999999987776544445578999999999999877766
Q ss_pred CCccccCCCCCcEEeccCccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCccc
Q 041505 86 LPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERI 156 (248)
Q Consensus 86 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~l 156 (248)
.+..+..+++|++|++++|.+. +..+..+..+++|+.|++++|.+...
T Consensus 92 ~~~~~~~l~~L~~L~l~~N~l~-----------------------~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 92 PNGVFDKLTQLKELALDTNQLK-----------------------SVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCS-----------------------CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CHHHhhCCcccCEEECcCCcce-----------------------EeCHHHhcCCcccCEEEecCCCeecc
Confidence 5666788999999999985432 11223356788899999999987543
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=4.6e-15 Score=113.02 Aligned_cols=136 Identities=18% Similarity=0.193 Sum_probs=85.1
Q ss_pred HhhhhhhcCCCCccEEEccCCCCCcccCC------cc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCc
Q 041505 13 FSLYAFKQNNPHIVVLNLRDCKSLKSLPA------GI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNS 85 (248)
Q Consensus 13 ~~l~~~l~~l~~L~~L~l~~~~~~~~~~~------~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 85 (248)
.+.-+.+.....++.++++.+.+.+..|. .+ .+++|++|++++|.+ ..+| .+..+++|++|++++|.+. .
T Consensus 8 ~~~~~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~l~-~ 84 (198)
T 1ds9_A 8 KDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIK-K 84 (198)
T ss_dssp HHHHHHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEEEC-S
T ss_pred HHHHHHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCCcc-c
Confidence 33333455566777777777766666655 66 788888888866654 4467 6888888888888886544 6
Q ss_pred CCccccCCCCCcEEeccCccCCccccc--ccCCCCceEecccCCcccccc-cccccCCCCcCeEEccCCcCc
Q 041505 86 LPSGLCKLKLLNYLTLNCCSNLQRLPD--ELGNLEALWISREAGVISRWL-PENIGQLSSLGKLDLQKNNFE 154 (248)
Q Consensus 86 ~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~l~~~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l~ 154 (248)
+|..+..+++|++|++++|.+.+ +|. .+++++.|++++ |.+.+.. ...+..+++|+.|++++|.+.
T Consensus 85 l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~--N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 85 IENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSN--NKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp CSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESE--EECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred ccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEEECCC--CcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 77766677888888888865543 331 233455555555 3333211 124555566666666666553
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.43 E-value=1.7e-14 Score=127.10 Aligned_cols=220 Identities=12% Similarity=0.021 Sum_probs=128.0
Q ss_pred cCCCCccEEEccCCCCCcccCCc-c-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCC---------cCcCcCCc
Q 041505 20 QNNPHIVVLNLRDCKSLKSLPAG-I-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYC---------ESLNSLPS 88 (248)
Q Consensus 20 ~~l~~L~~L~l~~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~---------~~~~~~~~ 88 (248)
..+++|++|++++|.+.+..... + .+++|++|++++|.....++.....+++|++|++.++ .+......
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 34677777788777733322222 2 6777888887665211122333445778888877332 11111111
Q ss_pred cc-cCCCCCcEEeccCccCCcccc----cccCCCCceEecccC----Cccc-----ccccccccCCCCcCeEEccCCcCc
Q 041505 89 GL-CKLKLLNYLTLNCCSNLQRLP----DELGNLEALWISREA----GVIS-----RWLPENIGQLSSLGKLDLQKNNFE 154 (248)
Q Consensus 89 ~l-~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~l~~~~----n~~~-----~~~~~~l~~~~~L~~L~l~~n~l~ 154 (248)
.+ ..+++|+.|.+..+++.+..+ ...++|+.|++..+. +.+. ..++..+..+++|+.|++++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 22 236788888776655543322 245678888887211 2222 12333367788899999977 553
Q ss_pred -ccchhhhc-cCCcceecccCccccccCC----CCCcccceeccccccccccchhhcccccccccccccccccCcchhch
Q 041505 155 -RIPESVIQ-LSKLGRLYLRYWERLQSLP----KLPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 155 -~lp~~l~~-~~~L~~L~l~~n~~~~~l~----~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~ 228 (248)
..+..+.. +++|++|++++|.+..... ..+++|++|++++|.. .... ......++++|+.|++++|.+...+
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~ 522 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKA-LLANASKLETMRSLWMSSCSVSFGA 522 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHH-HHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHH-HHHHHHhCCCCCEEeeeCCCCCHHH
Confidence 22334443 8899999999987532211 2358899999999864 2211 1122345789999999999986666
Q ss_pred HHHHHHHHhhhhhe
Q 041505 229 EEFLKMLCKKLNFW 242 (248)
Q Consensus 229 ~~~~~~l~~~l~~~ 242 (248)
.+.+..-++.+++.
T Consensus 523 ~~~l~~~lp~l~i~ 536 (594)
T 2p1m_B 523 CKLLGQKMPKLNVE 536 (594)
T ss_dssp HHHHHHHCTTEEEE
T ss_pred HHHHHHhCCCCEEE
Confidence 65554434555443
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=4.1e-12 Score=94.71 Aligned_cols=106 Identities=19% Similarity=0.121 Sum_probs=76.8
Q ss_pred ccCcccEEEcCCCCCccccChhhhcc-cCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCcccccccCCCCceEe
Q 041505 44 HLEFLKELDLLNGTAIEELPSAIECL-YKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWI 122 (248)
Q Consensus 44 ~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l 122 (248)
.+.+|++|++++|.+. .+|. +..+ ++|++|++++|.+.+. ..+..+++|++|++++|.+
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l---------------- 76 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI---------------- 76 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCC----------------
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcc----------------
Confidence 6778888888666544 5554 4444 4888888888765543 4577777888888877433
Q ss_pred cccCCccccccc-ccccCCCCcCeEEccCCcCcccch--hhhccCCcceecccCcccc
Q 041505 123 SREAGVISRWLP-ENIGQLSSLGKLDLQKNNFERIPE--SVIQLSKLGRLYLRYWERL 177 (248)
Q Consensus 123 ~~~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~lp~--~l~~~~~L~~L~l~~n~~~ 177 (248)
.+ +| ..++.+++|+.|++++|.++.+|. .+..+++|++|++++|.+.
T Consensus 77 -------~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 77 -------CR-IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp -------CE-ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred -------cc-cCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 22 33 334778899999999999988886 7888999999999998653
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=2.1e-11 Score=90.80 Aligned_cols=108 Identities=23% Similarity=0.192 Sum_probs=71.2
Q ss_pred cEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCcc
Q 041505 26 VVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCS 105 (248)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 105 (248)
+.+++++|. ++.+|..+. +.|++|++++|.+....|..+.++++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 15 ~~l~~~~n~-l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCC-CCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 677887776 566666553 677788886666555446667778888888887765544333345677777777777743
Q ss_pred CCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch
Q 041505 106 NLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE 158 (248)
Q Consensus 106 ~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~ 158 (248)
+ .+..+..++.+++|+.|++++|.+...+.
T Consensus 93 l-----------------------~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 93 L-----------------------KSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp C-----------------------CCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred c-----------------------ceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 3 22122346777888888888888765554
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.31 E-value=2.5e-11 Score=90.04 Aligned_cols=107 Identities=22% Similarity=0.193 Sum_probs=71.7
Q ss_pred ccEEEccCCCCCcccCCccccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCc
Q 041505 25 IVVLNLRDCKSLKSLPAGIHLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCC 104 (248)
Q Consensus 25 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 104 (248)
.+.+++++|. +..+|..+. +.|++|++++|.+....|..+.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~-l~~ip~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSC-CSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCC-cCccCccCC-CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677888876 555665542 67778888666655554666777888888888877655444445667777888777774
Q ss_pred cCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCccc
Q 041505 105 SNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERI 156 (248)
Q Consensus 105 ~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~l 156 (248)
.+ .+..+..++.+++|+.|++++|.++..
T Consensus 89 ~l-----------------------~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QL-----------------------KSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CC-----------------------CCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cc-----------------------CEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 33 222233467778888888888877533
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=1.1e-11 Score=91.86 Aligned_cols=102 Identities=24% Similarity=0.076 Sum_probs=82.3
Q ss_pred chhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCc
Q 041505 5 VDDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 5 ~~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
++.+.+.++.+|..+ .+++++|++++|.+.+..|..+ .+++|++|++++|.+....+..+.++++|++|++++|.+.
T Consensus 14 l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 14 VDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp EECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC
Confidence 456677888888765 4899999999998666657777 8999999999877765444455789999999999998776
Q ss_pred CcCCccccCCCCCcEEeccCccCCc
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNLQ 108 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~~ 108 (248)
+..+..+..+++|++|++++|.+..
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 92 SIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 6556668899999999999976643
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=1.7e-11 Score=91.32 Aligned_cols=101 Identities=23% Similarity=0.149 Sum_probs=80.9
Q ss_pred cchhhccchHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccCh-hhhcccCCCEEeccCCc
Q 041505 4 LVDDHALELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPS-AIECLYKLLHLDLEYCE 81 (248)
Q Consensus 4 l~~~~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 81 (248)
.++.+.+.+..+|..+. ++|++|++++|.+.+..|..+ .+++|++|++++|.+. .+|. .+.++++|++|++++|.
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCCc
Confidence 34566777888887664 899999999999666667777 8999999999777654 4554 57899999999999987
Q ss_pred CcCcCCccccCCCCCcEEeccCccCC
Q 041505 82 SLNSLPSGLCKLKLLNYLTLNCCSNL 107 (248)
Q Consensus 82 ~~~~~~~~l~~l~~L~~L~l~~~~~~ 107 (248)
+.+..+..+..+++|++|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 66544455889999999999997654
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=1.2e-13 Score=105.13 Aligned_cols=130 Identities=21% Similarity=0.180 Sum_probs=100.0
Q ss_pred chHhhhhhhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCcc
Q 041505 11 ELFSLYAFKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSG 89 (248)
Q Consensus 11 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 89 (248)
.++.+|..+..+++|++|++++|. +..+| .+ .+++|++|++++|.+ ..+|..+..+++|++|++++|.+.+ +| .
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~ 110 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIAS-LS-G 110 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEECCC-HH-H
T ss_pred cHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCcCCc-CC-c
Confidence 456677788999999999999998 55577 66 899999999977765 4788888889999999999986654 55 5
Q ss_pred ccCCCCCcEEeccCccCCccc----ccccCCCCceEecccCCccccccccc----------ccCCCCcCeEE
Q 041505 90 LCKLKLLNYLTLNCCSNLQRL----PDELGNLEALWISREAGVISRWLPEN----------IGQLSSLGKLD 147 (248)
Q Consensus 90 l~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~l~~~~n~~~~~~~~~----------l~~~~~L~~L~ 147 (248)
+..+++|++|++++|.+.+.- ...+++++.|++++ |.+.+..|.. +..+++|+.|+
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~--N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG--NPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS--CHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC--CccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 888999999999998776422 23566788999998 6565444432 55566666655
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=2.5e-11 Score=99.47 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=66.1
Q ss_pred CCCCcCeEEccCCcCcccch-hhhccCCcceecccCccccccCCC----CCcccc-eeccccccccccchhhcccccccc
Q 041505 139 QLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLYLRYWERLQSLPK----LPCKLH-ELDAHHCTALESLSGLFSSFEART 212 (248)
Q Consensus 139 ~~~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~l~~n~~~~~l~~----~~~~L~-~L~l~~~~~l~~~~~~~~~l~~l~ 212 (248)
.+++|+.+++++|+++.+|. .|.++.+|+.+++..| ++.++. ...+|+ .+.+.+ .++.+ ....|.+++
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I--~~~aF~~c~ 297 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAI--EFGAFMGCD 297 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEE--CTTTTTTCT
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEE--chhhhhCCc
Confidence 37899999999999998875 6889999999999887 444543 246687 888876 33433 334566777
Q ss_pred cccccccccCcchhchHHHH
Q 041505 213 RYFDLRYNYNWIEMRSEEFL 232 (248)
Q Consensus 213 ~L~~l~l~~n~i~~~~~~~~ 232 (248)
+|+.+++..|.+...+...|
T Consensus 298 ~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 298 NLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp TEEEEEECSSCCCEECTTTT
T ss_pred cCCEEEeCCCccCccchhhh
Confidence 99999998998887765433
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=1.5e-12 Score=108.47 Aligned_cols=153 Identities=14% Similarity=0.046 Sum_probs=91.6
Q ss_pred CCCccEEEccCCCCCcccCCcc------ccCcccEEEcCCCCCccccC-hhhhcccCCCEEeccCCcCcCcCCccc----
Q 041505 22 NPHIVVLNLRDCKSLKSLPAGI------HLEFLKELDLLNGTAIEELP-SAIECLYKLLHLDLEYCESLNSLPSGL---- 90 (248)
Q Consensus 22 l~~L~~L~l~~~~~~~~~~~~~------~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l---- 90 (248)
++.|+.|++++|.+.......+ ..+.|++|++++|.+...-. .....+++|++|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678899999988544322222 23689999998887654332 223457788999999886654333333
Q ss_pred -cCCCCCcEEeccCccCCcc----cc---cccCCCCceEecccCCccccc----ccccccCCCCcCeEEccCCcCcc---
Q 041505 91 -CKLKLLNYLTLNCCSNLQR----LP---DELGNLEALWISREAGVISRW----LPENIGQLSSLGKLDLQKNNFER--- 155 (248)
Q Consensus 91 -~~l~~L~~L~l~~~~~~~~----~~---~~~~~l~~L~l~~~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~--- 155 (248)
...++|++|++++|.+... ++ ...+++++|++++ |.+.+. ++..+...++|+.|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~--N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH--TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT--SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC--CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 2357788888888765421 11 1234566666666 333321 23445556667777777776642
Q ss_pred --cchhhhccCCcceecccCccc
Q 041505 156 --IPESVIQLSKLGRLYLRYWER 176 (248)
Q Consensus 156 --lp~~l~~~~~L~~L~l~~n~~ 176 (248)
++..+...++|++|++++|.+
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHhCCCCCEEeccCCCC
Confidence 233444556677777766653
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.11 E-value=9.6e-12 Score=103.64 Aligned_cols=132 Identities=17% Similarity=0.077 Sum_probs=95.8
Q ss_pred CCccEEEccCCCCCcccCCcc--ccCcccEEEcCCCCCccccChhh-----hcccCCCEEeccCCcCcC----cCCcccc
Q 041505 23 PHIVVLNLRDCKSLKSLPAGI--HLEFLKELDLLNGTAIEELPSAI-----ECLYKLLHLDLEYCESLN----SLPSGLC 91 (248)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~----~~~~~l~ 91 (248)
.+|++|++++|.+.......+ .+++|++|++++|.+...-...+ ...++|++|++++|.+.. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 699999999998655433334 67899999998887654433333 246889999999987654 2445557
Q ss_pred CCCCCcEEeccCccCCcc----cc---cccCCCCceEecccCCccccc----ccccccCCCCcCeEEccCCcCccc
Q 041505 92 KLKLLNYLTLNCCSNLQR----LP---DELGNLEALWISREAGVISRW----LPENIGQLSSLGKLDLQKNNFERI 156 (248)
Q Consensus 92 ~l~~L~~L~l~~~~~~~~----~~---~~~~~l~~L~l~~~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~l 156 (248)
.+++|++|++++|.+... ++ ....+++.|++++ |.+.+. ++..+...++|+.|++++|.++..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~--N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY--NGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS--SCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC--CCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 789999999999876532 12 2345788999999 545432 445566788999999999998643
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=4.9e-10 Score=92.32 Aligned_cols=98 Identities=19% Similarity=0.111 Sum_probs=76.6
Q ss_pred hhcc-chHhhhhhhcCCCCccEEEccC-CCCCcccC-Ccc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcC
Q 041505 7 DHAL-ELFSLYAFKQNNPHIVVLNLRD-CKSLKSLP-AGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 7 ~~~~-~l~~l~~~l~~l~~L~~L~l~~-~~~~~~~~-~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
.+.+ .+..+|. +..+++|+.|+|++ |. +..++ ..+ .+++|++|+|++|.+....|..|.++++|++|++++|.+
T Consensus 15 ~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 15 CTRDGALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CCSSCCCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred cCCCCCCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 3444 7888998 99999999999996 77 55555 566 899999999988877666667789999999999999766
Q ss_pred cCcCCccccCCCCCcEEeccCccCC
Q 041505 83 LNSLPSGLCKLKLLNYLTLNCCSNL 107 (248)
Q Consensus 83 ~~~~~~~l~~l~~L~~L~l~~~~~~ 107 (248)
. .+|..+.....|+.|++.+|.+.
T Consensus 93 ~-~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 93 E-SLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp S-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred c-eeCHHHcccCCceEEEeeCCCcc
Confidence 5 45544444344999999997765
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=7e-10 Score=91.38 Aligned_cols=107 Identities=22% Similarity=0.136 Sum_probs=77.8
Q ss_pred cEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccC-hhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccC
Q 041505 26 VVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELP-SAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNC 103 (248)
Q Consensus 26 ~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 103 (248)
..++.+++..+..+|. + .+.+|++|++++++.+..+| ..|.++++|++|++++|.+.+..|..|..+++|++|++++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3467777623667888 8 88899999997534445554 6788999999999999887777777888899999999988
Q ss_pred ccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccc
Q 041505 104 CSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIP 157 (248)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp 157 (248)
|.+. .+| +..+..+. |+.|++.+|.+....
T Consensus 90 N~l~-~~~----------------------~~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 90 NALE-SLS----------------------WKTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp SCCS-CCC----------------------STTTCSCC-CCEEECCSSCCCCCG
T ss_pred Cccc-eeC----------------------HHHcccCC-ceEEEeeCCCccCCC
Confidence 6543 111 22233333 999999999986443
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=1.1e-09 Score=89.57 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=94.7
Q ss_pred CCCccEEEccCCCCCcccCC-cc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcC---cC------------
Q 041505 22 NPHIVVLNLRDCKSLKSLPA-GI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCES---LN------------ 84 (248)
Q Consensus 22 l~~L~~L~l~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---~~------------ 84 (248)
+++|+.+++.+ . +..+++ ++ ++++|+.+++++|.....-+.+|.++.++..+....... ..
T Consensus 100 ~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 88899999988 5 555554 45 889999999977665443345566666666665443110 00
Q ss_pred -----------cCCcc---------------------------c-cCCCCCcEEeccCccCCccccc-cc---CCCCceE
Q 041505 85 -----------SLPSG---------------------------L-CKLKLLNYLTLNCCSNLQRLPD-EL---GNLEALW 121 (248)
Q Consensus 85 -----------~~~~~---------------------------l-~~l~~L~~L~l~~~~~~~~~~~-~~---~~l~~L~ 121 (248)
.++.. + ..+++|+.++++.|+.. .+|. .+ .+|++++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEE
Confidence 00000 0 02678999999886544 4443 33 3566777
Q ss_pred ecccCCcccccccccccCCCCcC-eEEccCCcCcccc-hhhhccCCcceecccCccc
Q 041505 122 ISREAGVISRWLPENIGQLSSLG-KLDLQKNNFERIP-ESVIQLSKLGRLYLRYWER 176 (248)
Q Consensus 122 l~~~~n~~~~~~~~~l~~~~~L~-~L~l~~n~l~~lp-~~l~~~~~L~~L~l~~n~~ 176 (248)
+.. | ....-..+|.++++|+ .+++.+ .++.++ ..|.++++|+.+++..|.+
T Consensus 257 l~~--n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 257 LPH--N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp CCT--T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred CCc--c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence 766 4 3322345688999999 999987 677775 5788899999999877753
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.84 E-value=6.3e-08 Score=81.38 Aligned_cols=150 Identities=14% Similarity=0.094 Sum_probs=77.1
Q ss_pred hHhhh-hhhcCCCCccEEEccCCCCCcccC-Ccc-ccCcccEEEcCCCCCccccCh-hhhcccCCCEEeccCCcCcCcCC
Q 041505 12 LFSLY-AFKQNNPHIVVLNLRDCKSLKSLP-AGI-HLEFLKELDLLNGTAIEELPS-AIECLYKLLHLDLEYCESLNSLP 87 (248)
Q Consensus 12 l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 87 (248)
++.++ .++.. .+|+.+.+.. . +..++ ..+ .+++|+.+++..|. +..++. +|. +.+|+.+.+.. .....-.
T Consensus 146 i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~ 219 (401)
T 4fdw_A 146 LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFV-YAGIEEVLLPV-TLKEIGS 219 (401)
T ss_dssp CCEECTTTTTT-CCCCEEECCT-T-CCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTT-TCCCSEEECCT-TCCEECT
T ss_pred ccEECHHhcCC-CCceEEEeCC-C-ccEehHHHhhCcccCCeeecCCCc-ceEechhhEe-ecccCEEEeCC-chheehh
Confidence 44444 23444 3577777775 3 34443 344 67777777774444 334443 333 46677777764 3333334
Q ss_pred ccccCCCCCcEEeccCccCCccccc-cc--CCCCceEecccCCcccccccccccCCCCcCeEEccCCcCc-----ccc-h
Q 041505 88 SGLCKLKLLNYLTLNCCSNLQRLPD-EL--GNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFE-----RIP-E 158 (248)
Q Consensus 88 ~~l~~l~~L~~L~l~~~~~~~~~~~-~~--~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~-----~lp-~ 158 (248)
..+..+++|+.+++.. +.. .++. .+ .+++.+.+.. .....-..+|.++++|+.+.+.++.+. .++ .
T Consensus 220 ~aF~~~~~L~~l~l~~-~l~-~I~~~aF~~~~L~~i~lp~---~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~ 294 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIPE-NVS-TIGQEAFRESGITTVKLPN---GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY 294 (401)
T ss_dssp TTTTTCTTCCCEECCT-TCC-EECTTTTTTCCCSEEEEET---TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT
T ss_pred hHhhCCCCCCEEecCC-Ccc-CccccccccCCccEEEeCC---CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH
Confidence 4466666777777655 221 2221 12 2344555522 222212345666666666666655443 333 3
Q ss_pred hhhccCCcceeccc
Q 041505 159 SVIQLSKLGRLYLR 172 (248)
Q Consensus 159 ~l~~~~~L~~L~l~ 172 (248)
.|.++++|+.+++.
T Consensus 295 aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 295 CLEGCPKLARFEIP 308 (401)
T ss_dssp TTTTCTTCCEECCC
T ss_pred HhhCCccCCeEEeC
Confidence 55566666666665
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=2e-09 Score=89.16 Aligned_cols=131 Identities=14% Similarity=0.067 Sum_probs=66.4
Q ss_pred cChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccCccCCcccc-----cccCCCCceEecccCCcccc-----
Q 041505 62 LPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSNLQRLP-----DELGNLEALWISREAGVISR----- 131 (248)
Q Consensus 62 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~~l~~L~l~~~~n~~~~----- 131 (248)
++..+..+|+|+.|.+++|.. ..++. + .+++|+.|++..|.+..... ..+++|++|++....+...+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 334455566666666665421 12222 2 25666666666554432211 13556666665431111110
Q ss_pred cccccc--cCCCCcCeEEccCCcCcc-cchhhh---ccCCcceecccCcccccc----CCC---CCcccceeccccc
Q 041505 132 WLPENI--GQLSSLGKLDLQKNNFER-IPESVI---QLSKLGRLYLRYWERLQS----LPK---LPCKLHELDAHHC 195 (248)
Q Consensus 132 ~~~~~l--~~~~~L~~L~l~~n~l~~-lp~~l~---~~~~L~~L~l~~n~~~~~----l~~---~~~~L~~L~l~~~ 195 (248)
.+...+ ..+++|+.|++.+|.++. .+..+. .+++|++|+++.|.+... ++. .+++|+.|++++|
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 111112 346778888887777642 222222 467788888877754331 222 2367777777766
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.69 E-value=2.5e-07 Score=77.74 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=27.3
Q ss_pred hhcCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCcccc-ChhhhcccCCCEEeccC
Q 041505 18 FKQNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEEL-PSAIECLYKLLHLDLEY 79 (248)
Q Consensus 18 ~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~ 79 (248)
++..+.+|+.+++++|. +..++... .+..|+.+.+. ++ +..+ ..+|.++++|+.+++..
T Consensus 175 aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp-~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLP-VT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECC-TT-CCEECTTTTTTCTTCCCEECCT
T ss_pred HhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeC-Cc-hheehhhHhhCCCCCCEEecCC
Confidence 34445555555555544 33344333 44555555553 22 2222 23455555555555544
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=7.7e-08 Score=79.64 Aligned_cols=167 Identities=19% Similarity=0.122 Sum_probs=103.4
Q ss_pred hhhcccCCCEEeccCCcCc---------CcCCccccCCCCCcEEeccCccCCcccccccCCCCceEecccCCcccccccc
Q 041505 65 AIECLYKLLHLDLEYCESL---------NSLPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPE 135 (248)
Q Consensus 65 ~~~~l~~L~~L~l~~~~~~---------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~ 135 (248)
+...+++|+.|.+...... +.+...+..+++|+.|++++|.....-+-..++|++|++..+ ........
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~--~l~~~~l~ 211 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISG--GLPDSVVE 211 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECS--BCCHHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecC--CCChHHHH
Confidence 3556788888877543211 123344566799999999886322221224678899999873 33332333
Q ss_pred ccc--CCCCcCeEEccC--Cc------Ccccchhh--hccCCcceecccCccccccC----C--CCCcccceeccccccc
Q 041505 136 NIG--QLSSLGKLDLQK--NN------FERIPESV--IQLSKLGRLYLRYWERLQSL----P--KLPCKLHELDAHHCTA 197 (248)
Q Consensus 136 ~l~--~~~~L~~L~l~~--n~------l~~lp~~l--~~~~~L~~L~l~~n~~~~~l----~--~~~~~L~~L~l~~~~~ 197 (248)
.+. .+++|+.|+++. +. +..+...+ ..+++|++|++..|.+.... . ...++|++|+++.+ .
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~ 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-V 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-C
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-C
Confidence 343 789999999853 11 22222222 35799999999988653211 1 23578999999765 4
Q ss_pred cccchh--hcccccccccccccccccCcchhchHHHHHH
Q 041505 198 LESLSG--LFSSFEARTRYFDLRYNYNWIEMRSEEFLKM 234 (248)
Q Consensus 198 l~~~~~--~~~~l~~l~~L~~l~l~~n~i~~~~~~~~~~ 234 (248)
+..... ....+..+++|+.|+++.|.|+..+.+.+..
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 443221 1223346789999999999988776665554
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=4.7e-08 Score=73.23 Aligned_cols=64 Identities=14% Similarity=0.254 Sum_probs=27.9
Q ss_pred hhcCCCCccEEEccCC-CCCcc----cCCcc-ccCcccEEEcCCCCCccc----cChhhhcccCCCEEeccCCc
Q 041505 18 FKQNNPHIVVLNLRDC-KSLKS----LPAGI-HLEFLKELDLLNGTAIEE----LPSAIECLYKLLHLDLEYCE 81 (248)
Q Consensus 18 ~l~~l~~L~~L~l~~~-~~~~~----~~~~~-~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~ 81 (248)
.+...+.|++|++++| .+... +...+ ..+.|++|++++|.+... +...+...++|++|++++|.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3444555666666665 42221 12222 344555555554443321 22223333445555554443
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=1e-07 Score=71.34 Aligned_cols=114 Identities=16% Similarity=0.037 Sum_probs=67.0
Q ss_pred ccCcccEEEcCCC-CCccc----cChhhhcccCCCEEeccCCcCcCc----CCccccCCCCCcEEeccCccCCccccccc
Q 041505 44 HLEFLKELDLLNG-TAIEE----LPSAIECLYKLLHLDLEYCESLNS----LPSGLCKLKLLNYLTLNCCSNLQRLPDEL 114 (248)
Q Consensus 44 ~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 114 (248)
..+.|++|++++| .+... +...+...++|++|++++|.+... +...+...+.|++|++++|.+...
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~----- 108 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS----- 108 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH-----
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH-----
Confidence 4667777777666 44322 334455566777777777655432 223344446677777766543211
Q ss_pred CCCCceEecccCCcccccccccccCCCCcCeEEc--cCCcCcc-----cchhhhccCCcceecccCccc
Q 041505 115 GNLEALWISREAGVISRWLPENIGQLSSLGKLDL--QKNNFER-----IPESVIQLSKLGRLYLRYWER 176 (248)
Q Consensus 115 ~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l--~~n~l~~-----lp~~l~~~~~L~~L~l~~n~~ 176 (248)
-...+...+...++|+.|++ ++|.++. +...+...++|++|++++|.+
T Consensus 109 --------------g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 --------------GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp --------------HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred --------------HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 11124455666777888888 7787742 344556667788888777753
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=3.8e-07 Score=67.27 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=51.1
Q ss_pred CccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccC-hhhhc----ccCCCEEeccCCcCcCc-CCccccCCCCC
Q 041505 24 HIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELP-SAIEC----LYKLLHLDLEYCESLNS-LPSGLCKLKLL 96 (248)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-~~~~~----l~~L~~L~l~~~~~~~~-~~~~l~~l~~L 96 (248)
.|+.||+++|.+...--..+ ++++|++|++++|..++.-. ..+.. +++|++|++++|...++ --..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 57778888877444333334 67778888887776554321 22333 24677888877754332 23345667777
Q ss_pred cEEeccCccCC
Q 041505 97 NYLTLNCCSNL 107 (248)
Q Consensus 97 ~~L~l~~~~~~ 107 (248)
++|++++|...
T Consensus 142 ~~L~L~~c~~I 152 (176)
T 3e4g_A 142 KYLFLSDLPGV 152 (176)
T ss_dssp CEEEEESCTTC
T ss_pred CEEECCCCCCC
Confidence 77777776544
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=2.6e-06 Score=67.25 Aligned_cols=64 Identities=25% Similarity=0.180 Sum_probs=30.7
Q ss_pred cCcccEEEcCCCCCcc--ccChhhhcccCCCEEeccCCcCcCcCCccccCCC--CCcEEeccCccCCccc
Q 041505 45 LEFLKELDLLNGTAIE--ELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLK--LLNYLTLNCCSNLQRL 110 (248)
Q Consensus 45 l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~ 110 (248)
++.|+.|++++|.+.. .+|..+..+++|+.|++++|.+.+. ..+..+. +|++|++.+|.+.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 4555555555554433 3344445555555555555544332 1122222 5555555555554433
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=2.4e-06 Score=62.94 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=8.5
Q ss_pred ccCCCCcCeEEccCC
Q 041505 137 IGQLSSLGKLDLQKN 151 (248)
Q Consensus 137 l~~~~~L~~L~l~~n 151 (248)
+.++++|+.|++++|
T Consensus 135 L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDL 149 (176)
T ss_dssp GGGCTTCCEEEEESC
T ss_pred HhcCCCCCEEECCCC
Confidence 445555666666555
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=1.8e-05 Score=62.39 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=56.6
Q ss_pred hcccCCCEEeccCCcCcC--cCCccccCCCCCcEEeccCccCCcc-cccccC--CCCceEecccCCccccccc-------
Q 041505 67 ECLYKLLHLDLEYCESLN--SLPSGLCKLKLLNYLTLNCCSNLQR-LPDELG--NLEALWISREAGVISRWLP------- 134 (248)
Q Consensus 67 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~--~l~~L~l~~~~n~~~~~~~------- 134 (248)
.++++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+.+. ..+.+. +|++|++.+ |.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~--Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG--NSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTT--STTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccC--CcCccccCcchhHHH
Confidence 568899999999987766 4556677889999999999877653 123344 777888888 55654443
Q ss_pred ccccCCCCcCeEE
Q 041505 135 ENIGQLSSLGKLD 147 (248)
Q Consensus 135 ~~l~~~~~L~~L~ 147 (248)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2367788888876
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.77 E-value=0.00056 Score=56.99 Aligned_cols=186 Identities=13% Similarity=0.057 Sum_probs=89.7
Q ss_pred hhcCCCCccEEEccCCCCCcccCC-cc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCC
Q 041505 18 FKQNNPHIVVLNLRDCKSLKSLPA-GI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKL 95 (248)
Q Consensus 18 ~l~~l~~L~~L~l~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 95 (248)
++..+.+|+.+++..+ +..++. .+ .+..|+.+.+..+.. .+........+|+.+.+.. .....-...+..+.+
T Consensus 180 ~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~ 254 (394)
T 4fs7_A 180 LFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPD-SFTELGKSVFYGCTD 254 (394)
T ss_dssp TTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECT-TCCEECSSTTTTCSS
T ss_pred cccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce--EeehhhcccCCCceEEECC-Cceeccccccccccc
Confidence 4666788999998875 444443 34 778888887744321 2233334456677777654 232222334556667
Q ss_pred CcEEeccCccCCcccccccCCCC---ceEecccCCcccccccccccCCCCcCeEEccCCcCcccc-hhhhccCCcceecc
Q 041505 96 LNYLTLNCCSNLQRLPDELGNLE---ALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIP-ESVIQLSKLGRLYL 171 (248)
Q Consensus 96 L~~L~l~~~~~~~~~~~~~~~l~---~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp-~~l~~~~~L~~L~l 171 (248)
++.+.+..+ ........+.... ...... ... ....+..+.+|+.+.+..+ ++.++ ..|.++.+|+.+++
T Consensus 255 l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~---~~i--~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~l 327 (394)
T 4fs7_A 255 LESISIQNN-KLRIGGSLFYNCSGLKKVIYGS---VIV--PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDL 327 (394)
T ss_dssp CCEEEECCT-TCEECSCTTTTCTTCCEEEECS---SEE--CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECC
T ss_pred ceeEEcCCC-cceeeccccccccccceeccCc---eee--ccccccccccccccccccc-cceechhhhcCCCCCCEEEe
Confidence 777776552 2211112222222 222211 111 1123555666666666443 44443 24555666666665
Q ss_pred cCccccccCCC----CCcccceeccccccccccchhhccccccccccccccccc
Q 041505 172 RYWERLQSLPK----LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNY 221 (248)
Q Consensus 172 ~~n~~~~~l~~----~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~ 221 (248)
..+ ++.++. ...+|+.+.+... ++.+ +...|.++.+|+.+++..
T Consensus 328 p~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I--~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 328 PYL--VEEIGKRSFRGCTSLSNINFPLS--LRKI--GANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTT--CCEECTTTTTTCTTCCEECCCTT--CCEE--CTTTBTTCTTCCEEEEEG
T ss_pred CCc--ccEEhHHhccCCCCCCEEEECcc--ccEe--hHHHhhCCCCCCEEEECC
Confidence 432 222222 1244555555431 2222 223344555666666543
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.34 E-value=0.0014 Score=54.63 Aligned_cols=76 Identities=7% Similarity=0.045 Sum_probs=45.2
Q ss_pred CccEEEccCCCCCccc-CCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEec
Q 041505 24 HIVVLNLRDCKSLKSL-PAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTL 101 (248)
Q Consensus 24 ~L~~L~l~~~~~~~~~-~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 101 (248)
.+..+.+... +..+ ..++ .+..|+.+.+..+ ....-..++.+++.|+.+.+.. .....-...|..+.+|+.+.+
T Consensus 243 ~~~~~~ip~~--v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~l 318 (394)
T 4gt6_A 243 EDPAFKIPNG--VARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDI 318 (394)
T ss_dssp CCSEEECCTT--EEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEC
T ss_pred ccceEEcCCc--ceEcccceeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEe
Confidence 4445555442 2333 3345 7788888888433 2222235577888888888864 333333344667788888877
Q ss_pred cC
Q 041505 102 NC 103 (248)
Q Consensus 102 ~~ 103 (248)
..
T Consensus 319 p~ 320 (394)
T 4gt6_A 319 PE 320 (394)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.16 E-value=0.0044 Score=51.51 Aligned_cols=148 Identities=9% Similarity=0.101 Sum_probs=76.2
Q ss_pred hhcCCCCccEEEccCCCCCcccCCcc---------------ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcC
Q 041505 18 FKQNNPHIVVLNLRDCKSLKSLPAGI---------------HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCES 82 (248)
Q Consensus 18 ~l~~l~~L~~L~l~~~~~~~~~~~~~---------------~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (248)
++..+..+......... .......+ ....+..+.+ .+.....-..+|.++..|+.+.+.. ..
T Consensus 200 af~~c~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-p~~v~~i~~~aF~~c~~L~~i~lp~-~~ 276 (394)
T 4gt6_A 200 AFSECFALSTITSDSES-YPAIDNVLYEKSANGDYALIRYPSQREDPAFKI-PNGVARIETHAFDSCAYLASVKMPD-SV 276 (394)
T ss_dssp TTTTCTTCCEEEECCSS-SCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC-CTTEEEECTTTTTTCSSCCEEECCT-TC
T ss_pred hhhhccccceecccccc-cccccceeecccccccccccccccccccceEEc-CCcceEcccceeeecccccEEeccc-cc
Confidence 45667778777766543 22222211 1223334444 2221112235688999999999976 34
Q ss_pred cCcCCccccCCCCCcEEeccCccCCccccc-cc---CCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccc-
Q 041505 83 LNSLPSGLCKLKLLNYLTLNCCSNLQRLPD-EL---GNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIP- 157 (248)
Q Consensus 83 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~---~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp- 157 (248)
...-...+..+++|+.+.+.. .. ..+++ .+ .+|+.+.+.. + ....-..+|.+|.+|+.+.+..+ ++.+.
T Consensus 277 ~~I~~~aF~~c~~L~~i~l~~-~i-~~I~~~aF~~c~~L~~i~lp~--~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 277 VSIGTGAFMNCPALQDIEFSS-RI-TELPESVFAGCISLKSIDIPE--G-ITQILDDAFAGCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp CEECTTTTTTCTTCCEEECCT-TC-CEECTTTTTTCTTCCEEECCT--T-CCEECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred ceecCcccccccccccccCCC-cc-cccCceeecCCCCcCEEEeCC--c-ccEehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence 433445577788999998864 22 22222 22 2344444433 1 11111234566666666666432 44443
Q ss_pred hhhhccCCcceecccCc
Q 041505 158 ESVIQLSKLGRLYLRYW 174 (248)
Q Consensus 158 ~~l~~~~~L~~L~l~~n 174 (248)
..|.++.+|+.+++.++
T Consensus 351 ~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp GGGTTCTTCCEEEESSC
T ss_pred hHhhCCCCCCEEEECCc
Confidence 24555666666655544
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.13 E-value=0.011 Score=49.18 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=32.0
Q ss_pred hhccCCcceecccCccccccCCC----CCcccceeccccccccccchhhcccccccccccccccccCcchhch
Q 041505 160 VIQLSKLGRLYLRYWERLQSLPK----LPCKLHELDAHHCTALESLSGLFSSFEARTRYFDLRYNYNWIEMRS 228 (248)
Q Consensus 160 l~~~~~L~~L~l~~n~~~~~l~~----~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~l~l~~n~i~~~~ 228 (248)
+..+.+|+.+.+..+ ++.+++ ...+|+.+++.+ .++.+ +...|.++.+|+.+++..+ +...+
T Consensus 293 F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I--~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEI--GKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEE--CTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred ccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEE--hHHhccCCCCCCEEEECcc-ccEeh
Confidence 445566666655433 222222 235666666643 22322 2234556778888888765 44443
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.96 E-value=0.0087 Score=49.33 Aligned_cols=145 Identities=12% Similarity=0.046 Sum_probs=79.8
Q ss_pred cCCCCccEEEccCCCCCcccCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCcCcCCccccCCCCCcE
Q 041505 20 QNNPHIVVLNLRDCKSLKSLPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNY 98 (248)
Q Consensus 20 ~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 98 (248)
.....+..+.+.... .......+ .+..|+.+.+. ......-..++.++..|+.+.+..+ ....-...+..+.+|+.
T Consensus 191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~-~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITIT-SGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECC-TTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccccccccce-eEEeecccccccccceeeec-cceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 334555666665532 33333344 67788888873 3332222355778888888888763 33333445666778888
Q ss_pred EeccCccCCcccc----cccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccch-hhhccCCcceeccc
Q 041505 99 LTLNCCSNLQRLP----DELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIPE-SVIQLSKLGRLYLR 172 (248)
Q Consensus 99 L~l~~~~~~~~~~----~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~l~ 172 (248)
+.+.. +.. .++ ....+|+.+.+.. +.....-..+|.++.+|+.+.+..+ ++.+.. .|.++.+|+.+.+.
T Consensus 268 i~l~~-~i~-~i~~~aF~~c~~L~~i~l~~--~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 268 LNFYA-KVK-TVPYLLCSGCSNLTKVVMDN--SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECC-CCS-EECTTTTTTCTTCCEEEECC--TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccc-cce-eccccccccccccccccccc--cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 87754 221 222 1223444555543 2222212345677777777777543 555543 56667777766653
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.84 E-value=0.00096 Score=49.95 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=5.6
Q ss_pred hccCCcceecccC
Q 041505 161 IQLSKLGRLYLRY 173 (248)
Q Consensus 161 ~~~~~L~~L~l~~ 173 (248)
...+.|+.|+++.
T Consensus 154 ~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 154 EENESLLRVGISF 166 (197)
T ss_dssp HHCSSCCEEECCC
T ss_pred HhCCCcCeEeccC
Confidence 3344444444433
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.71 E-value=0.024 Score=46.66 Aligned_cols=168 Identities=10% Similarity=0.001 Sum_probs=101.5
Q ss_pred hhhcCCCCccEEEccCCCCCcc------------cCCcc-ccCcccEEEcCCCCCccccChhhhcccCCCEEeccCCcCc
Q 041505 17 AFKQNNPHIVVLNLRDCKSLKS------------LPAGI-HLEFLKELDLLNGTAIEELPSAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 17 ~~l~~l~~L~~L~l~~~~~~~~------------~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (248)
.++.....++...+..+..... ....+ ....+..+.+. ..........+..+.+|+.+.+.. ...
T Consensus 152 ~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~f~~~~~l~~i~~~~-~~~ 229 (379)
T 4h09_A 152 GIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIP-STVKTVTAYGFSYGKNLKKITITS-GVT 229 (379)
T ss_dssp CTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECC-TTCCEECTTTTTTCSSCSEEECCT-TCC
T ss_pred chhcccccccccccccccceeecccceecccccceeccccccccccccccc-cceeEEeecccccccccceeeecc-cee
Confidence 3466678888887766432211 11112 34455555552 222223345577888999998875 344
Q ss_pred CcCCccccCCCCCcEEeccCccCCcccc-cc---cCCCCceEecccCCcccccccccccCCCCcCeEEccCCcCcccc-h
Q 041505 84 NSLPSGLCKLKLLNYLTLNCCSNLQRLP-DE---LGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNFERIP-E 158 (248)
Q Consensus 84 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~---~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~lp-~ 158 (248)
......+..+.+|+.+.+..+ .. .+. .. ..+++.+.+.. + ....-..++..+++|+.+.+.++.++.++ .
T Consensus 230 ~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~--~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~ 304 (379)
T 4h09_A 230 TLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYA--K-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPR 304 (379)
T ss_dssp EECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECC--C-CSEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred EEccccccCCccceEEEcCCC-cc-EeCccccceeehhccccccc--c-ceeccccccccccccccccccccccceehhh
Confidence 444455777899999998763 22 222 22 33455666644 2 22222346889999999999988888776 4
Q ss_pred hhhccCCcceecccCccccccCCC----CCcccceeccc
Q 041505 159 SVIQLSKLGRLYLRYWERLQSLPK----LPCKLHELDAH 193 (248)
Q Consensus 159 ~l~~~~~L~~L~l~~n~~~~~l~~----~~~~L~~L~l~ 193 (248)
.|.++.+|+.+.+..+ ++.++. ...+|+.+.+.
T Consensus 305 aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 305 VFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred hhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 7888999999988644 233332 22456666554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.56 E-value=0.0014 Score=48.97 Aligned_cols=118 Identities=12% Similarity=0.093 Sum_probs=66.2
Q ss_pred hcCCCCccEEEccCC-CCCcc-----cCCcc-ccCcccEEEcCCCCCccc----cChhhhcccCCCEEeccCCcCcCc--
Q 041505 19 KQNNPHIVVLNLRDC-KSLKS-----LPAGI-HLEFLKELDLLNGTAIEE----LPSAIECLYKLLHLDLEYCESLNS-- 85 (248)
Q Consensus 19 l~~l~~L~~L~l~~~-~~~~~-----~~~~~-~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~-- 85 (248)
+..-+.|+.|+++++ . ++. +.+.+ .-..|+.|++++|.+... +...+..-+.|++|++++|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~-igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKR-VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCS-SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCC-CCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 344567888888875 4 432 22333 456788888866665432 344455566788888877765442
Q ss_pred --CCccccCCCCCcEEeccCccCCcccccccCCCCceEecccCCcccccccccccCCCCcCeEEccCCcC
Q 041505 86 --LPSGLCKLKLLNYLTLNCCSNLQRLPDELGNLEALWISREAGVISRWLPENIGQLSSLGKLDLQKNNF 153 (248)
Q Consensus 86 --~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~l~~~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 153 (248)
+.+.+..-+.|+.|++++|..... .+.....+...+..-+.|+.|+++.|.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~i----------------g~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVL----------------GNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCC----------------CHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCc----------------CHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 223344445577777764311000 0111112445566667888888887765
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.76 E-value=0.023 Score=39.37 Aligned_cols=55 Identities=22% Similarity=0.181 Sum_probs=33.5
Q ss_pred cEEEccCCCCCc--ccCCccccCcccEEEcCCCCCccccC-hhhhcccCCCEEeccCCcCc
Q 041505 26 VVLNLRDCKSLK--SLPAGIHLEFLKELDLLNGTAIEELP-SAIECLYKLLHLDLEYCESL 83 (248)
Q Consensus 26 ~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 83 (248)
..++-+++. +. .+|..+. ++|++|+|++|.+ ..+| ..|..+++|++|++.+|.+.
T Consensus 11 ~~v~Cs~~~-L~~~~vP~~lp-~~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRG-LTWASLPTAFP-VDTTELVLTGNNL-TALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSC-CCTTTSCSCCC-TTCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCC-CccccCCCCCC-cCCCEEECCCCcC-CccChhhhhhccccCEEEecCCCee
Confidence 356666655 43 5665431 2477788855554 4444 45677888888888776543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.61 E-value=0.098 Score=36.13 Aligned_cols=36 Identities=19% Similarity=-0.022 Sum_probs=20.7
Q ss_pred CCCEEeccCCcCcCcCCccccCCCCCcEEeccCccC
Q 041505 71 KLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNCCSN 106 (248)
Q Consensus 71 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 106 (248)
+|++|++++|.+...-+..+..+++|++|++.+|..
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 466666666554433334455566666666666543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=49.46 E-value=18 Score=23.30 Aligned_cols=39 Identities=10% Similarity=-0.078 Sum_probs=23.3
Q ss_pred hhhhcccCCCEEeccCCcCcCcCCccccCCCCCcEEeccC
Q 041505 64 SAIECLYKLLHLDLEYCESLNSLPSGLCKLKLLNYLTLNC 103 (248)
Q Consensus 64 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 103 (248)
.+|.+|.+|+.+.+.. .....-...|..+.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 3466677777776665 33333344566677777776654
Done!