Query 041508
Match_columns 854
No_of_seqs 330 out of 1698
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:53:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2058 Ypt/Rab GTPase activat 100.0 1.3E-51 2.8E-56 459.5 20.5 345 102-499 39-390 (436)
2 KOG2223 Uncharacterized conser 100.0 2.4E-37 5.2E-42 335.9 18.3 278 237-527 293-574 (586)
3 smart00164 TBC Domain in Tre-2 100.0 7.8E-37 1.7E-41 309.4 17.4 190 242-456 1-198 (199)
4 KOG4567 GTPase-activating prot 100.0 5.6E-36 1.2E-40 316.1 15.8 269 234-505 24-356 (370)
5 KOG1092 Ypt/Rab-specific GTPas 100.0 4.9E-36 1.1E-40 326.4 14.9 266 227-503 170-464 (484)
6 COG5210 GTPase-activating prot 100.0 8.5E-35 1.8E-39 335.3 20.1 236 233-491 200-442 (496)
7 KOG2222 Uncharacterized conser 100.0 3.8E-33 8.2E-38 304.7 16.1 249 233-507 157-416 (848)
8 PF00566 RabGAP-TBC: Rab-GTPas 100.0 1.1E-32 2.5E-37 279.8 17.4 169 307-476 44-214 (214)
9 KOG4347 GTPase-activating prot 100.0 1.7E-32 3.7E-37 311.4 17.8 268 235-529 192-489 (671)
10 KOG1093 Predicted protein kina 100.0 3.9E-31 8.5E-36 295.7 16.7 255 227-514 337-595 (725)
11 KOG4436 Predicted GTPase activ 99.9 2E-26 4.3E-31 265.3 17.4 230 234-493 566-808 (948)
12 KOG1102 Rab6 GTPase activator 99.9 3.3E-25 7.1E-30 249.1 13.6 240 234-504 134-380 (397)
13 KOG1091 Ypt/Rab-specific GTPas 99.9 4.5E-24 9.7E-29 239.7 17.0 258 248-507 27-360 (625)
14 KOG2224 Uncharacterized conser 99.9 1.3E-24 2.7E-29 236.2 9.7 247 237-491 426-712 (781)
15 KOG2221 PDZ-domain interacting 99.9 2.5E-23 5.3E-28 211.6 7.4 168 237-431 95-267 (267)
16 KOG2595 Predicted GTPase activ 99.9 2.5E-21 5.4E-26 207.4 17.9 248 236-516 49-307 (395)
17 KOG2197 Ypt/Rab-specific GTPas 99.8 9.2E-21 2E-25 217.6 11.6 258 240-507 172-439 (488)
18 KOG3636 Uncharacterized conser 99.8 4.8E-18 1E-22 186.5 13.9 222 245-506 36-268 (669)
19 KOG4436 Predicted GTPase activ 99.7 3.7E-17 8.1E-22 189.5 13.2 245 235-504 174-435 (948)
20 KOG2801 Probable Rab-GAPs [Int 99.3 9.5E-11 2E-15 124.3 15.8 261 221-510 18-294 (559)
21 PF14961 BROMI: Broad-minded p 97.7 0.00023 4.9E-09 88.4 12.5 187 334-522 1085-1290(1296)
22 KOG1648 Uncharacterized conser 97.7 2.8E-06 6E-11 95.9 -3.7 217 237-491 550-785 (813)
23 PF09726 Macoilin: Transmembra 90.3 11 0.00025 46.6 18.1 135 596-730 421-610 (697)
24 PF00769 ERM: Ezrin/radixin/mo 89.6 17 0.00036 39.5 16.8 83 596-680 8-90 (246)
25 PF04849 HAP1_N: HAP1 N-termin 87.1 23 0.00049 39.8 16.0 119 595-720 169-296 (306)
26 PTZ00121 MAEBL; Provisional 86.7 41 0.00088 44.5 19.4 25 680-704 1259-1283(2084)
27 COG1842 PspA Phage shock prote 86.2 53 0.0011 35.4 20.3 135 596-735 34-187 (225)
28 PF07111 HCR: Alpha helical co 82.8 78 0.0017 39.2 18.8 45 637-681 507-551 (739)
29 PF05701 WEMBL: Weak chloropla 82.3 82 0.0018 37.9 19.0 134 596-734 284-427 (522)
30 PF09726 Macoilin: Transmembra 80.8 48 0.001 41.3 16.7 66 642-717 543-611 (697)
31 KOG2072 Translation initiation 80.7 1.7E+02 0.0037 37.0 23.7 92 629-727 757-848 (988)
32 COG4942 Membrane-bound metallo 79.5 78 0.0017 37.1 16.8 84 595-678 156-244 (420)
33 TIGR02680 conserved hypothetic 79.4 1.4E+02 0.0031 40.2 21.4 30 706-735 360-389 (1353)
34 PF12325 TMF_TATA_bd: TATA ele 79.0 28 0.0006 34.0 11.2 73 596-674 19-91 (120)
35 PF00038 Filament: Intermediat 78.8 36 0.00078 37.5 13.7 85 596-680 212-298 (312)
36 KOG0982 Centrosomal protein Nu 78.7 28 0.00062 40.4 12.7 27 659-685 347-373 (502)
37 TIGR02169 SMC_prok_A chromosom 78.1 1.4E+02 0.003 38.7 20.5 30 701-730 470-499 (1164)
38 TIGR02169 SMC_prok_A chromosom 76.8 1.5E+02 0.0032 38.4 20.3 16 709-724 394-409 (1164)
39 KOG0992 Uncharacterized conser 76.6 1.4E+02 0.0029 35.9 17.5 112 606-725 80-208 (613)
40 PF15070 GOLGA2L5: Putative go 75.6 1E+02 0.0022 37.9 17.3 95 596-694 25-138 (617)
41 PF00261 Tropomyosin: Tropomyo 75.2 67 0.0014 34.5 14.1 76 643-732 63-138 (237)
42 PF05701 WEMBL: Weak chloropla 75.1 1.7E+02 0.0037 35.3 18.8 131 596-726 44-191 (522)
43 COG1196 Smc Chromosome segrega 74.8 1.9E+02 0.0041 38.3 20.5 42 687-728 871-912 (1163)
44 TIGR02894 DNA_bind_RsfA transc 73.1 28 0.00061 35.6 9.8 37 640-676 114-150 (161)
45 PRK12704 phosphodiesterase; Pr 73.0 1.9E+02 0.0042 34.9 18.5 76 648-729 121-198 (520)
46 TIGR03319 YmdA_YtgF conserved 72.5 2E+02 0.0043 34.7 18.4 38 691-729 155-192 (514)
47 PTZ00121 MAEBL; Provisional 72.3 2.1E+02 0.0046 38.5 18.9 18 239-256 606-623 (2084)
48 PF13851 GAS: Growth-arrest sp 71.9 1.4E+02 0.003 31.6 16.6 55 608-664 27-82 (201)
49 KOG0612 Rho-associated, coiled 71.8 78 0.0017 41.4 15.2 130 596-735 633-770 (1317)
50 PF09304 Cortex-I_coil: Cortex 71.5 99 0.0021 29.7 14.1 68 596-665 12-79 (107)
51 PRK03947 prefoldin subunit alp 70.2 1E+02 0.0022 30.2 13.0 46 636-681 93-138 (140)
52 PRK04863 mukB cell division pr 69.6 2.6E+02 0.0057 38.1 20.1 93 639-732 378-474 (1486)
53 PRK09039 hypothetical protein; 69.3 2.1E+02 0.0046 32.6 17.0 111 596-715 77-187 (343)
54 PRK11637 AmiB activator; Provi 68.3 2.4E+02 0.0052 32.9 22.9 27 639-665 179-205 (428)
55 PF04012 PspA_IM30: PspA/IM30 68.2 1.6E+02 0.0035 30.9 18.9 97 637-738 84-189 (221)
56 TIGR02977 phageshock_pspA phag 67.9 1.7E+02 0.0037 31.0 18.5 40 694-733 145-185 (219)
57 PF05278 PEARLI-4: Arabidopsis 67.8 67 0.0014 35.5 11.9 79 596-680 162-243 (269)
58 PF08317 Spc7: Spc7 kinetochor 67.0 1.2E+02 0.0026 34.2 14.3 101 596-699 180-282 (325)
59 PRK00106 hypothetical protein; 66.9 3E+02 0.0065 33.5 18.5 33 696-729 181-213 (535)
60 PF15003 HAUS2: HAUS augmin-li 66.2 2.2E+02 0.0047 31.8 15.4 119 596-741 57-198 (277)
61 PHA02562 46 endonuclease subun 64.9 2.8E+02 0.0061 33.0 17.8 54 637-690 358-411 (562)
62 COG1196 Smc Chromosome segrega 63.4 4.7E+02 0.01 34.7 20.6 27 640-666 393-419 (1163)
63 PF15030 DUF4527: Protein of u 62.8 1.9E+02 0.0041 31.7 13.8 102 596-705 26-133 (277)
64 PF14931 IFT20: Intraflagellar 61.8 1.3E+02 0.0029 29.4 11.6 34 650-683 79-115 (120)
65 KOG0976 Rho/Rac1-interacting s 61.1 2.5E+02 0.0053 35.6 15.8 116 596-731 319-441 (1265)
66 KOG0994 Extracellular matrix g 60.8 5E+02 0.011 34.5 18.7 35 595-629 1417-1451(1758)
67 PF07888 CALCOCO1: Calcium bin 60.0 4E+02 0.0086 32.5 25.0 81 645-726 372-457 (546)
68 KOG0161 Myosin class II heavy 59.8 4.7E+02 0.01 36.7 19.7 31 699-729 1075-1105(1930)
69 KOG0250 DNA repair protein RAD 59.3 4E+02 0.0086 34.9 17.9 123 595-719 663-802 (1074)
70 KOG0996 Structural maintenance 58.0 2E+02 0.0044 37.8 15.0 66 594-660 859-930 (1293)
71 KOG0994 Extracellular matrix g 56.7 5E+02 0.011 34.5 17.7 26 682-707 1672-1697(1758)
72 PF05911 DUF869: Plant protein 56.4 3.2E+02 0.0068 34.8 16.4 34 677-710 132-165 (769)
73 PF12718 Tropomyosin_1: Tropom 56.4 2.2E+02 0.0048 28.5 14.8 21 641-661 77-97 (143)
74 TIGR03752 conj_TIGR03752 integ 56.0 1E+02 0.0022 36.7 11.3 45 584-628 50-94 (472)
75 PRK11637 AmiB activator; Provi 55.7 3.9E+02 0.0085 31.1 20.6 9 773-781 314-322 (428)
76 PF06098 Radial_spoke_3: Radia 55.6 2.8E+02 0.0061 31.1 14.3 43 663-709 187-229 (291)
77 PF12718 Tropomyosin_1: Tropom 55.5 2.3E+02 0.0049 28.4 16.9 26 703-728 97-122 (143)
78 PF11068 YlqD: YlqD protein; 54.6 1.3E+02 0.0028 29.9 10.3 27 630-656 13-39 (131)
79 PRK02224 chromosome segregatio 54.5 5.6E+02 0.012 32.6 19.6 15 247-261 147-161 (880)
80 PF03962 Mnd1: Mnd1 family; I 54.3 1.8E+02 0.0039 30.4 11.9 65 608-672 70-138 (188)
81 PRK10884 SH3 domain-containing 54.2 1.3E+02 0.0029 32.0 11.1 26 705-730 137-162 (206)
82 KOG0612 Rho-associated, coiled 54.1 3E+02 0.0065 36.4 15.7 33 694-726 699-733 (1317)
83 KOG4673 Transcription factor T 53.9 5.4E+02 0.012 32.2 17.9 60 645-704 496-586 (961)
84 PRK10884 SH3 domain-containing 52.1 1.5E+02 0.0032 31.6 11.1 21 595-615 95-115 (206)
85 KOG1102 Rab6 GTPase activator 51.6 2.9 6.2E-05 48.3 -1.9 129 313-471 3-131 (397)
86 KOG2197 Ypt/Rab-specific GTPas 51.2 9 0.00019 45.6 2.1 33 234-266 66-98 (488)
87 PF07888 CALCOCO1: Calcium bin 51.0 5.5E+02 0.012 31.4 18.8 20 700-719 382-401 (546)
88 COG4913 Uncharacterized protei 50.7 2.7E+02 0.0059 35.0 13.9 108 596-717 298-411 (1104)
89 PRK02224 chromosome segregatio 50.5 5.4E+02 0.012 32.7 17.6 27 639-665 309-335 (880)
90 PHA02562 46 endonuclease subun 49.4 5.1E+02 0.011 30.8 16.4 43 645-694 359-401 (562)
91 KOG4196 bZIP transcription fac 49.0 2.2E+02 0.0047 28.4 10.6 68 580-657 26-94 (135)
92 TIGR03185 DNA_S_dndD DNA sulfu 48.8 5E+02 0.011 32.0 16.5 11 702-712 489-499 (650)
93 PF11932 DUF3450: Protein of u 48.8 3E+02 0.0066 29.6 13.1 70 610-681 45-114 (251)
94 PF13805 Pil1: Eisosome compon 48.0 4.3E+02 0.0094 29.4 14.1 114 596-728 106-220 (271)
95 PF00769 ERM: Ezrin/radixin/mo 47.1 4.1E+02 0.0089 28.9 17.0 119 603-735 4-124 (246)
96 cd00632 Prefoldin_beta Prefold 47.0 2.5E+02 0.0053 26.3 11.2 80 595-674 8-100 (105)
97 PF12128 DUF3584: Protein of u 46.2 8.8E+02 0.019 32.4 19.3 20 595-614 354-373 (1201)
98 PF04849 HAP1_N: HAP1 N-termin 46.2 1.5E+02 0.0034 33.4 10.5 70 595-666 229-298 (306)
99 PF14389 Lzipper-MIP1: Leucine 45.4 1.1E+02 0.0023 28.3 7.7 66 600-665 8-82 (88)
100 PF08614 ATG16: Autophagy prot 45.3 2.7E+02 0.0058 29.0 11.7 73 596-670 119-191 (194)
101 PF06698 DUF1192: Protein of u 45.2 43 0.00093 28.9 4.7 30 640-669 24-53 (59)
102 PF09744 Jnk-SapK_ap_N: JNK_SA 45.0 3.6E+02 0.0078 27.6 13.4 20 638-657 90-109 (158)
103 KOG1916 Nuclear protein, conta 44.7 8.2E+02 0.018 31.9 16.8 56 626-681 914-981 (1283)
104 KOG4673 Transcription factor T 44.6 2.2E+02 0.0048 35.4 11.9 78 600-685 704-781 (961)
105 PF04111 APG6: Autophagy prote 44.1 4.9E+02 0.011 29.4 14.2 25 704-728 117-141 (314)
106 TIGR01010 BexC_CtrB_KpsE polys 43.6 3.1E+02 0.0067 31.1 12.8 20 714-733 278-297 (362)
107 PRK03918 chromosome segregatio 43.1 8E+02 0.017 31.1 20.1 19 642-660 264-282 (880)
108 PRK10698 phage shock protein P 41.9 4.7E+02 0.01 28.0 17.6 24 710-733 162-185 (222)
109 KOG1265 Phospholipase C [Lipid 40.7 9.5E+02 0.021 31.2 18.7 106 624-731 1062-1176(1189)
110 KOG2224 Uncharacterized conser 40.4 11 0.00024 43.6 0.5 12 371-382 561-572 (781)
111 TIGR01005 eps_transp_fam exopo 40.3 8.4E+02 0.018 30.5 18.1 21 714-734 376-396 (754)
112 TIGR01000 bacteriocin_acc bact 40.1 6.8E+02 0.015 29.4 16.9 23 596-618 100-122 (457)
113 PF05130 FlgN: FlgN protein; 39.6 3.3E+02 0.0071 25.6 12.0 116 597-743 9-124 (143)
114 KOG0288 WD40 repeat protein Ti 39.6 6.6E+02 0.014 29.7 14.2 37 708-744 108-144 (459)
115 PF12325 TMF_TATA_bd: TATA ele 39.5 3.8E+02 0.0082 26.3 11.9 77 597-679 34-116 (120)
116 PF12240 Angiomotin_C: Angiomo 38.5 3.4E+02 0.0075 29.0 11.0 74 651-725 57-147 (205)
117 KOG1854 Mitochondrial inner me 38.4 8.8E+02 0.019 30.2 16.9 131 596-733 332-477 (657)
118 PF08232 Striatin: Striatin fa 38.1 97 0.0021 30.7 6.7 42 639-681 27-68 (134)
119 TIGR01843 type_I_hlyD type I s 38.1 6.4E+02 0.014 28.5 20.0 14 597-610 85-98 (423)
120 KOG4010 Coiled-coil protein TP 37.8 93 0.002 32.7 6.6 29 640-668 47-75 (208)
121 PF10186 Atg14: UV radiation r 37.7 5.5E+02 0.012 27.6 18.9 20 645-664 71-90 (302)
122 PF04201 TPD52: Tumour protein 37.6 2.3E+02 0.005 29.2 9.3 28 639-666 31-58 (162)
123 PF15619 Lebercilin: Ciliary p 37.5 2.9E+02 0.0062 29.2 10.4 81 585-665 110-192 (194)
124 TIGR00570 cdk7 CDK-activating 37.4 6.7E+02 0.014 28.5 13.8 105 624-728 100-210 (309)
125 COG4942 Membrane-bound metallo 37.3 7.7E+02 0.017 29.2 14.8 31 600-630 38-68 (420)
126 KOG0579 Ste20-like serine/thre 36.8 9E+02 0.02 30.5 15.2 88 640-727 1020-1123(1187)
127 PF05622 HOOK: HOOK protein; 36.7 1.5E+02 0.0032 37.1 9.5 91 595-685 241-359 (713)
128 KOG0804 Cytoplasmic Zn-finger 36.4 7.8E+02 0.017 29.4 14.3 56 600-657 347-402 (493)
129 PF12128 DUF3584: Protein of u 36.3 1.2E+03 0.026 31.2 18.1 30 332-362 161-190 (1201)
130 PF10186 Atg14: UV radiation r 36.0 5.8E+02 0.013 27.4 20.3 19 596-614 30-48 (302)
131 PF10473 CENP-F_leu_zip: Leuci 35.8 4.1E+02 0.0089 26.8 10.6 71 595-674 54-124 (140)
132 PF11802 CENP-K: Centromere-as 35.5 6.7E+02 0.014 28.0 13.9 116 597-718 56-179 (268)
133 COG3132 Uncharacterized protei 35.3 39 0.00085 35.1 3.5 23 640-662 188-210 (215)
134 PF08614 ATG16: Autophagy prot 35.3 4.5E+02 0.0098 27.3 11.5 54 641-694 120-173 (194)
135 PF12777 MT: Microtubule-bindi 35.2 4.5E+02 0.0096 29.9 12.3 15 707-721 89-103 (344)
136 smart00502 BBC B-Box C-termina 35.2 3.6E+02 0.0078 24.8 10.7 6 686-691 93-98 (127)
137 PLN03229 acetyl-coenzyme A car 34.6 3.9E+02 0.0084 33.8 12.2 121 595-718 599-730 (762)
138 TIGR00606 rad50 rad50. This fa 34.3 1.3E+03 0.029 31.1 19.7 37 638-674 882-918 (1311)
139 COG4238 Murein lipoprotein [Ce 34.3 1.3E+02 0.0028 27.2 6.0 44 639-701 34-77 (78)
140 PF10168 Nup88: Nuclear pore c 33.8 4.8E+02 0.01 32.9 13.1 20 730-749 658-677 (717)
141 PLN03086 PRLI-interacting fact 32.5 2.3E+02 0.0049 34.7 9.7 45 642-699 5-49 (567)
142 PF11559 ADIP: Afadin- and alp 32.5 5E+02 0.011 25.7 15.1 70 608-679 39-108 (151)
143 PF09755 DUF2046: Uncharacteri 32.5 7.9E+02 0.017 28.0 16.5 114 595-720 144-295 (310)
144 PF15450 DUF4631: Domain of un 32.0 1E+03 0.022 29.0 17.4 75 639-717 169-246 (531)
145 KOG3003 Molecular chaperone of 31.9 2.9E+02 0.0062 30.2 9.3 73 660-734 89-171 (236)
146 KOG2891 Surface glycoprotein [ 31.9 7E+02 0.015 27.9 12.3 12 606-617 333-344 (445)
147 PF04156 IncA: IncA protein; 31.8 5.7E+02 0.012 26.1 15.3 59 596-656 84-142 (191)
148 COG2268 Uncharacterized protei 31.7 1E+03 0.023 29.1 16.6 16 479-494 115-130 (548)
149 PRK04863 mukB cell division pr 31.4 1.6E+03 0.034 31.1 19.2 21 706-726 441-461 (1486)
150 PF05266 DUF724: Protein of un 31.2 6.5E+02 0.014 26.5 13.4 58 596-659 89-146 (190)
151 PF05276 SH3BP5: SH3 domain-bi 31.0 6.6E+02 0.014 27.5 12.1 83 595-677 130-217 (239)
152 PF07227 DUF1423: Protein of u 30.9 2.8E+02 0.006 32.9 9.7 39 665-712 363-410 (446)
153 KOG3632 Peripheral benzodiazep 30.6 33 0.00071 43.6 2.4 118 595-712 163-295 (1335)
154 PF03148 Tektin: Tektin family 30.2 8.6E+02 0.019 28.2 13.7 46 640-685 320-365 (384)
155 PF05700 BCAS2: Breast carcino 29.9 3.5E+02 0.0075 28.9 9.7 40 625-666 179-218 (221)
156 PF04728 LPP: Lipoprotein leuc 29.8 3.4E+02 0.0074 23.3 7.6 20 641-660 14-33 (56)
157 PRK06975 bifunctional uroporph 29.6 3.6E+02 0.0079 33.5 11.2 57 597-658 343-399 (656)
158 KOG1853 LIS1-interacting prote 29.2 8.3E+02 0.018 27.1 19.9 39 641-679 102-140 (333)
159 PRK10929 putative mechanosensi 29.1 1.5E+03 0.032 30.3 16.7 32 639-670 210-241 (1109)
160 PF08826 DMPK_coil: DMPK coile 28.1 3.4E+02 0.0073 23.7 7.4 30 626-657 30-59 (61)
161 KOG3080 Nucleolar protein-like 28.1 4.5E+02 0.0097 29.7 10.2 110 672-799 187-303 (328)
162 COG2433 Uncharacterized conser 27.6 8.9E+02 0.019 30.0 13.3 31 502-533 347-377 (652)
163 PF04111 APG6: Autophagy prote 27.5 9.1E+02 0.02 27.3 12.9 22 642-663 48-69 (314)
164 PRK00409 recombination and DNA 26.7 1.4E+03 0.031 29.1 15.8 10 642-651 553-562 (782)
165 PRK10803 tol-pal system protei 26.7 7E+02 0.015 27.3 11.6 23 700-722 148-172 (263)
166 COG4372 Uncharacterized protei 26.6 1.1E+03 0.024 27.8 19.4 133 596-736 119-270 (499)
167 KOG4571 Activating transcripti 26.6 1.8E+02 0.004 32.5 7.0 43 621-665 248-290 (294)
168 PF07106 TBPIP: Tat binding pr 26.6 3.4E+02 0.0074 27.4 8.7 35 596-630 82-118 (169)
169 KOG0976 Rho/Rac1-interacting s 25.8 1.5E+03 0.033 29.1 14.8 13 641-653 274-286 (1265)
170 KOG3990 Uncharacterized conser 25.3 2.8E+02 0.006 30.6 7.8 24 698-721 272-295 (305)
171 KOG0639 Transducin-like enhanc 25.1 1.8E+02 0.0038 35.0 6.8 41 594-634 31-88 (705)
172 KOG0971 Microtubule-associated 24.5 1.7E+03 0.037 29.2 18.2 80 635-714 267-346 (1243)
173 COG4026 Uncharacterized protei 24.4 7.5E+02 0.016 27.0 10.7 71 596-666 131-206 (290)
174 PF15619 Lebercilin: Ciliary p 24.4 8.5E+02 0.019 25.7 18.5 138 596-737 15-162 (194)
175 KOG4360 Uncharacterized coiled 24.3 4.8E+02 0.01 31.6 10.1 69 595-665 228-296 (596)
176 TIGR02338 gimC_beta prefoldin, 24.0 6.2E+02 0.013 23.9 11.4 73 596-668 13-98 (110)
177 PF10168 Nup88: Nuclear pore c 23.9 6.6E+02 0.014 31.8 11.9 35 639-677 588-622 (717)
178 PF11932 DUF3450: Protein of u 23.8 9.3E+02 0.02 25.9 14.7 11 645-655 85-95 (251)
179 KOG0163 Myosin class VI heavy 23.3 1.7E+03 0.036 28.7 14.9 85 596-680 864-959 (1259)
180 smart00787 Spc7 Spc7 kinetocho 22.8 1.1E+03 0.025 26.6 14.2 99 595-696 174-274 (312)
181 KOG1899 LAR transmembrane tyro 22.6 8.7E+02 0.019 30.3 11.8 57 596-659 128-189 (861)
182 KOG0161 Myosin class II heavy 22.3 2.4E+03 0.053 30.2 20.1 43 688-730 1034-1078(1930)
183 KOG0250 DNA repair protein RAD 22.2 1.2E+03 0.026 30.8 13.7 63 596-658 347-415 (1074)
184 PF06657 Cep57_MT_bd: Centroso 22.2 3.6E+02 0.0077 24.5 6.9 24 595-618 19-45 (79)
185 TIGR01069 mutS2 MutS2 family p 22.1 1.6E+03 0.034 28.7 14.9 17 604-620 508-524 (771)
186 PRK04778 septation ring format 21.9 1.5E+03 0.032 27.6 17.0 127 596-731 278-407 (569)
187 COG1579 Zn-ribbon protein, pos 21.9 1.1E+03 0.023 25.9 13.7 112 593-704 45-163 (239)
188 KOG4403 Cell surface glycoprot 21.8 1.4E+03 0.031 27.3 15.4 65 645-709 303-377 (575)
189 PF15463 ECM11: Extracellular 21.8 4.7E+02 0.01 25.9 8.3 39 636-674 93-131 (139)
190 PF05667 DUF812: Protein of un 21.7 1.6E+03 0.034 27.8 15.3 111 595-722 344-480 (594)
191 PF06098 Radial_spoke_3: Radia 21.7 6.4E+02 0.014 28.4 10.2 32 686-717 202-233 (291)
192 PTZ00266 NIMA-related protein 21.5 1.2E+03 0.026 30.8 13.8 7 716-722 530-536 (1021)
193 KOG3990 Uncharacterized conser 21.4 2.9E+02 0.0063 30.5 7.1 64 595-658 227-295 (305)
194 KOG0163 Myosin class VI heavy 21.0 1.8E+03 0.038 28.5 14.1 50 640-689 892-947 (1259)
195 PRK11239 hypothetical protein; 21.0 1.2E+02 0.0026 32.5 4.2 27 640-666 186-212 (215)
196 PF09731 Mitofilin: Mitochondr 20.9 1.5E+03 0.033 27.3 19.6 143 579-721 228-373 (582)
197 PRK00409 recombination and DNA 20.8 1.1E+03 0.023 30.2 13.0 7 712-718 612-618 (782)
198 TIGR01843 type_I_hlyD type I s 20.7 1.2E+03 0.027 26.2 19.5 20 596-615 77-96 (423)
199 PF14662 CCDC155: Coiled-coil 20.5 1E+03 0.023 25.3 12.1 36 595-630 17-52 (193)
200 PF09787 Golgin_A5: Golgin sub 20.2 1.5E+03 0.034 27.1 15.5 68 596-663 105-174 (511)
201 TIGR02680 conserved hypothetic 20.1 2.3E+03 0.05 29.1 19.3 24 715-738 471-494 (1353)
202 TIGR03319 YmdA_YtgF conserved 20.1 1.6E+03 0.034 27.2 18.7 23 598-620 56-78 (514)
No 1
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-51 Score=459.46 Aligned_cols=345 Identities=42% Similarity=0.675 Sum_probs=274.3
Q ss_pred ccccCCCCCCCCCCCchhhHhhhhcccccccceeeeeccccccHHHHHHHHHHHHhhcCCCCCCCc-CCCCCCCCCCccc
Q 041508 102 DDSSVKKPGSDSSSENATEKEEILSTTEKKTHRIIIWSEIRPSLRAIEDMMSVRVKKKGSIPKGEQ-TGRGKPSPPSDES 180 (854)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 180 (854)
.....+..+++.+..+... |.+... ..++++..|. ||+.|.+++++|+ +...-...+.+ -....+....+..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~--e~~~~~-~~~~~~~~~~-~~e~l~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~k~ 111 (436)
T KOG2058|consen 39 DGLCISKEGDDVTLGNKYE--ESKEDL-KLVQKVISWA-IRELLQAIEDLMS---KNNGFDQYSLQKLIGLPPSDGYLKW 111 (436)
T ss_pred hhccccccccccccccchh--ccccch-hcccccchhh-hhhhhhhhhhhhh---ccCcccccchhhcccCCcchhhhHH
Confidence 4455556666666444333 444444 5889999999 9999999999999 33222222222 2222222333333
Q ss_pred ccccCCCCCCCCcccccccCCCCCCCCCCCCCCCccchhhhhhhhhcccccCCCHHHHHHHHhCCCCchhHHHHHHHHhc
Q 041508 181 KSLKGASEEDSDDEFYDVEKSDPTQDSPSHDSVSASVTGAVAIDATTLQSLFPWKEELEVLVRGGLPMALRGELWQAFVG 260 (854)
Q Consensus 181 ~~~~~~~~~~s~e~fy~~~~~dp~~~~ps~~~~s~e~~s~l~~~~~~le~~~~~~ekLk~Lir~GIP~~LR~~VW~lLLG 260 (854)
-+..+..++.+...|+.....+ .... .+....++.++|+.++|+|||+.+|+.||..++|
T Consensus 112 ~s~~~~~~~r~~~~~~l~~~~~-~~~~-------------------~~~~~~~~s~elk~liRkGiP~~~R~~VW~~~~g 171 (436)
T KOG2058|consen 112 LSSYLAYEERRQLRWELELQSN-IKLH-------------------SPNDFPPRSDELKRLIRKGIPPELRGEVWWVLSG 171 (436)
T ss_pred HHHhhhhhhhHHHHHHHHhhhh-hccc-------------------ccccccCCcHHHHHHHHcCCChhhhhHHHHHHhc
Confidence 3444444444444444444333 1110 0345667889999999999999999999999999
Q ss_pred CccCCC-hHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhhhhhhhhcCCcCCCCC-CCCC---hhhHHHH
Q 041508 261 VRARRV-DKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQIEKDLPRTFPGH-PALD---NDGRNAL 335 (854)
Q Consensus 261 i~~~~~-e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~~qIekDV~RTfp~~-~~F~---e~g~~~L 335 (854)
...... +.+|+.++...... .....++|+.|+.||||++ ++|. +.++..|
T Consensus 172 ~~~~~~~~~~yq~ll~~~~~~-------------------------~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~L 226 (436)
T KOG2058|consen 172 ARRQLNYPGYYQELLRKGDEK-------------------------KSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTL 226 (436)
T ss_pred chhhccCchhHHHHHhcCCCc-------------------------cchHHHHHHhccccccCCCcccCCCCCchHHHHH
Confidence 433333 78999888765321 0146799999999999999 7884 3458999
Q ss_pred HHHHHHHHhhCCCCCccccchHHHHHHhhcCC-hHHHHHHHHHhhHhhhcCCCCchhHHHHHHHHHHHHHHHhhccchhh
Q 041508 336 RRLLTAYARHNPSVGYCQAMNFFAALLLLLMP-EENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVN 414 (854)
Q Consensus 336 rrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~-EedAFw~f~~Lm~~~l~~yfs~~~~~l~~~~~vLe~LLk~~dPeL~~ 414 (854)
+|||.||++|||.||||||||+|||+||++|+ |++|||||+.++++|+|.||++++.+.++++.+|+.||+..+|+|+.
T Consensus 227 rRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~ 306 (436)
T KOG2058|consen 227 RRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSL 306 (436)
T ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHCHHHHH
Confidence 99999999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhHHhhcCCCHHHHHHHHHhccCC
Q 041508 415 HLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQTLAGS 494 (854)
Q Consensus 415 HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~LFrvaLAIL~~~re~LL~~~D~~Eil~lLq~Lp~~ 494 (854)
||..++++..+|++.||+|+|++.+|.++++||||++|++|.++ +|++|+|+++..++.|+.+.+..+++.+|..+...
T Consensus 307 ~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskv-lfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~~ 385 (436)
T KOG2058|consen 307 HLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKV-LFRVALAILKKHEEEILKEDSSKEILRVLPDLTKR 385 (436)
T ss_pred hhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHH-HHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 99999999999999999999999999999877655
Q ss_pred CCCHH
Q 041508 495 TFDSS 499 (854)
Q Consensus 495 ~~D~~ 499 (854)
.+|.+
T Consensus 386 ~~~~~ 390 (436)
T KOG2058|consen 386 SIDPD 390 (436)
T ss_pred hhhhh
Confidence 55443
No 2
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=335.94 Aligned_cols=278 Identities=27% Similarity=0.447 Sum_probs=235.4
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhcCccCCChHHHHHHHHHhhhc-cCccccccCCCCCCCCCCCCCCCCCchhhhhhhhh
Q 041508 237 ELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNF-GNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQIEK 315 (854)
Q Consensus 237 kLk~Lir~GIP~~LR~~VW~lLLGi~~~~~e~~Y~~LL~k~~~~-~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~~qIek 315 (854)
..+.|+|.|||+.+||+||.+..|.......+.|..++.+..+. ...+.. +. .++....+....+|+.
T Consensus 293 R~relWwQGiP~~VRGkvW~laIGNel~it~elfd~~la~Aker~ak~~ae---q~--------~~sa~~re~sv~~i~L 361 (586)
T KOG2223|consen 293 RVRELWWQGIPPSVRGKVWSLAIGNELNITYELFDIALARAKEREAKSLAE---QM--------SNSAADREASVELIKL 361 (586)
T ss_pred HHHHHHHccCChhhcchhhHhhhCcccccCHHHHHHHHHHHHHHHHHHHHh---hc--------ccchhhhhcchhheee
Confidence 57889999999999999999999999888888998888776543 111111 00 1123344566789999
Q ss_pred cCCcCCCCCCCCChhh--HHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcCChHHHHHHHHHhhHhhh-cCCCCchhH
Q 041508 316 DLPRTFPGHPALDNDG--RNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYF-DGYYSEEMI 392 (854)
Q Consensus 316 DV~RTfp~~~~F~e~g--~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~EedAFw~f~~Lm~~~l-~~yfs~~~~ 392 (854)
|+.||||...+|+.+| ++.|..||.||+.|.|++||+|||.+|+++|++.|+..+||.||..|+++-+ ..||..+..
T Consensus 362 DisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd~~~AFiafANLLdkp~q~Aff~~d~s 441 (586)
T KOG2223|consen 362 DISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMDLADAFIAFANLLDKPCQQAFFRVDHS 441 (586)
T ss_pred chhccCcceeeeccCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcCCcHHHHHHHHHHhccHHHHHHHhcCcH
Confidence 9999999999998665 8999999999999999999999999999999999999999999999999874 568888888
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 041508 393 ESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYG 472 (854)
Q Consensus 393 ~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~LFrvaLAIL~~~r 472 (854)
.+...+..|+..|+...|+|+.||.++.+.|++|.+.|+.+||+..+|++..+||||+|+.+|..| ||+.+++||+.++
T Consensus 442 ~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeF-lfr~~lgIlklye 520 (586)
T KOG2223|consen 442 SMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEF-LFRTALGILKLYE 520 (586)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHH-HHHHHHHHHHHcc
Confidence 888889999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHhhcCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcchHHHHHHHHHhhhh
Q 041508 473 PALVTTKDAGDAVTLLQTLAGSTFDSSQLVLTACMGYQNHRPAVVAAVEERSKGL 527 (854)
Q Consensus 473 e~LL~~~D~~Eil~lLq~Lp~~~~D~~~LI~~A~~~~~~~r~~V~~~le~r~k~~ 527 (854)
+.|+.+ |+..+.++|..+|....-.+.+...++..+++....+.+.+++..|..
T Consensus 521 pkLl~m-Df~~~~qfLtklp~dL~~eelF~~i~~~~~~sr~kkwsqvf~~i~kd~ 574 (586)
T KOG2223|consen 521 PKLLVM-DFIHVAQFLTKLPEDLTPEELFMHIAYIQMQSRSKKWSQVFQEIDKDV 574 (586)
T ss_pred chHhhh-hHHHHHHHHHhCcccCCHHHHHHHHHHHhhhhhchhHHHHHHHHHhhc
Confidence 999985 999999999988765544444555566666654455555555554443
No 3
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=7.8e-37 Score=309.39 Aligned_cols=190 Identities=44% Similarity=0.775 Sum_probs=171.6
Q ss_pred HhCCCCchhHHHHHHHHhcCccCC---ChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhhhhhhhhcCC
Q 041508 242 VRGGLPMALRGELWQAFVGVRARR---VDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQIEKDLP 318 (854)
Q Consensus 242 ir~GIP~~LR~~VW~lLLGi~~~~---~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~~qIekDV~ 318 (854)
+++|||+.+|+.||+.++|+.+.. ....|..++...... +....++|++||.
T Consensus 1 ~~~Gip~~~R~~vW~~ll~~~~~~~~~~~~~Y~~l~~~~~~~-------------------------~~~~~~~I~~Dv~ 55 (199)
T smart00164 1 VRKGVPPSLRGVVWKLLLNAQPMDTSADKDLYSRLLKETAPK-------------------------DKSIVHQIEKDLR 55 (199)
T ss_pred CCCCCCHHHHHHHHHHHhCCchhhhcccchHHHHHHHhhcCC-------------------------ChhhHHHHhcccC
Confidence 378999999999999999998865 367888887654211 1124689999999
Q ss_pred cCCCCCCCCCh---hhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcC-ChHHHHHHHHHhhHhhhcCCCCchhHHH
Q 041508 319 RTFPGHPALDN---DGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLM-PEENAFWALMGILDDYFDGYYSEEMIES 394 (854)
Q Consensus 319 RTfp~~~~F~e---~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm-~EedAFw~f~~Lm~~~l~~yfs~~~~~l 394 (854)
||+|.+++|+. .++..|+|||.+|+.+||++|||||||+||++||+++ +|++|||||+.||+.+.+.||.+++.++
T Consensus 56 Rt~~~~~~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~ 135 (199)
T smart00164 56 RTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGL 135 (199)
T ss_pred CCCCCchhhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHH
Confidence 99999999963 5799999999999999999999999999999999999 4999999999999999888888888889
Q ss_pred HHHHHHHHHHHHhhccchhhhhhh-cCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCC
Q 041508 395 QVDQLVFEELVRERFPKLVNHLDY-LGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGN 456 (854)
Q Consensus 395 ~~~~~vLe~LLk~~dPeL~~HL~~-lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~ 456 (854)
...+.+++.+|+.++|+||+||.. .|+.+..|+++||+++|++++|++.++||||.||++|.
T Consensus 136 ~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 136 QLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999996 99999999999999999999999999999999999985
No 4
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=5.6e-36 Score=316.09 Aligned_cols=269 Identities=23% Similarity=0.351 Sum_probs=216.1
Q ss_pred CHHHHHHHHhCCCC--chhHHHHHHHHhcCccCCChHHHHHHHHHhhhccCccccc-------------------cCCCC
Q 041508 234 WKEELEVLVRGGLP--MALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQH-------------------SSQSD 292 (854)
Q Consensus 234 ~~ekLk~Lir~GIP--~~LR~~VW~lLLGi~~~~~e~~Y~~LL~k~~~~~~~~~q~-------------------~~~~~ 292 (854)
..++|+.++..|+| ..+|+.+|++|||+.+.+...+-..|..+...|.+..++. ..+..
T Consensus 24 d~kelr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~~~v~~~D~~~dhPl 103 (370)
T KOG4567|consen 24 DLKELRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNSKKVDSNDTDEDHPL 103 (370)
T ss_pred hHHHHHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccccccccCcccccCCC
Confidence 45689999999999 5899999999999998765444444444443332222211 01111
Q ss_pred CCCCCCCCCCCCCchhhhhhhhhcCCcCCCCCCCCCh----h----------------------h--HHHHHHHHHHHHh
Q 041508 293 NDSKSSTKDSVCLPEKWKGQIEKDLPRTFPGHPALDN----D----------------------G--RNALRRLLTAYAR 344 (854)
Q Consensus 293 ~~~~~~~~~s~~~~e~~~~qIekDV~RTfp~~~~F~e----~----------------------g--~~~LrrIL~aYa~ 344 (854)
.....+-|..++.+.+...||++||.||.|+..+|+. . | .....|||..||.
T Consensus 104 s~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAK 183 (370)
T KOG4567|consen 104 SLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAK 183 (370)
T ss_pred CCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhh
Confidence 1111223666778889999999999999999988842 1 1 2346899999999
Q ss_pred hCCCCCccccchHHHHHHhhcCC-----------hHHHHHHHHHhhHhhhcCC---CCchhHHHHHHHHHHHHHHHhhcc
Q 041508 345 HNPSVGYCQAMNFFAALLLLLMP-----------EENAFWALMGILDDYFDGY---YSEEMIESQVDQLVFEELVRERFP 410 (854)
Q Consensus 345 ~nP~VGY~QGMn~Iaa~LLlvm~-----------EedAFw~f~~Lm~~~l~~y---fs~~~~~l~~~~~vLe~LLk~~dP 410 (854)
.||.|||+||||.|++|+++++. |+|||.||+.||..+-.+| ...+..|++..+..+..+|+.+|-
T Consensus 184 LNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~~Msr~~~~lk~~D~ 263 (370)
T KOG4567|consen 184 LNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHFLMSRLSELLKKHDE 263 (370)
T ss_pred cCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhH
Confidence 99999999999999999999982 7799999999998764333 245567778878899999999999
Q ss_pred chhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhhHHhhcCCCHHHHHHHHH
Q 041508 411 KLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRV-MLFRTALALMELYGPALVTTKDAGDAVTLLQ 489 (854)
Q Consensus 411 eL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f-~LFrvaLAIL~~~re~LL~~~D~~Eil~lLq 489 (854)
+||.||+..+|.|.+|+++||.+||+.+||+++++||||.+|++..+| +|..+|+|||+..++.|+. .||...+++||
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~-~DF~~nmkLLQ 342 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILE-GDFTVNMKLLQ 342 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHh
Confidence 999999999999999999999999999999999999999999987665 3566999999999999998 69999999999
Q ss_pred hccCCCCCHHHHHHHH
Q 041508 490 TLAGSTFDSSQLVLTA 505 (854)
Q Consensus 490 ~Lp~~~~D~~~LI~~A 505 (854)
+.| +.|+..++..|
T Consensus 343 ~yp--~tdi~~~l~~A 356 (370)
T KOG4567|consen 343 NYP--TTDISKMLAVA 356 (370)
T ss_pred cCC--CCCHHHHHHHH
Confidence 987 67888888554
No 5
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-36 Score=326.35 Aligned_cols=266 Identities=24% Similarity=0.362 Sum_probs=219.0
Q ss_pred cccccCCCHHHHHHHHhCCCCchhHHHHHHHHhcCccCCChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCc
Q 041508 227 TLQSLFPWKEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLP 306 (854)
Q Consensus 227 ~le~~~~~~ekLk~Lir~GIP~~LR~~VW~lLLGi~~~~~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~ 306 (854)
.+.......++|++++|+|||..+|+.+|++|+|+.+......--.+-.+..+|...+.+......+ ....
T Consensus 170 ~~~~~~id~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~---------~~~~ 240 (484)
T KOG1092|consen 170 ILDSPIIDLEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTN---------GDED 240 (484)
T ss_pred cCCcccccHHHHHHHccCCCCccccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCC---------cccc
Confidence 3344445678999999999999999999999999988665433334444444444444443332222 0123
Q ss_pred hhhhhhhhhcCCcCCCCCCCCC-hhhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcC------C------------
Q 041508 307 EKWKGQIEKDLPRTFPGHPALD-NDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLM------P------------ 367 (854)
Q Consensus 307 e~~~~qIekDV~RTfp~~~~F~-e~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm------~------------ 367 (854)
.+..+||..|++|+.|..++|+ ...++.+.|||+.++.++|..||+||+|+++.+|+.++ +
T Consensus 241 ~d~~rQI~id~prm~p~~~l~q~~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l 320 (484)
T KOG1092|consen 241 QDTWRQIPIDIPRMNPHIPLFQQKIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLL 320 (484)
T ss_pred CccccccccCCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhc
Confidence 3568999999999999999996 45689999999999999999999999998888877542 0
Q ss_pred --------hHHHHHHHHHhhHhhhcCCCCchhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCC
Q 041508 368 --------EENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNML 439 (854)
Q Consensus 368 --------EedAFw~f~~Lm~~~l~~yfs~~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eL 439 (854)
|+|||||+.+|++.+..+| ....+|++.....|+.|++.+|+.|++||+.+|++...|+|+||.|||+++|
T Consensus 321 ~~E~~~~iEADsyWClskLLD~IQDNY-tfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~ 399 (484)
T KOG1092|consen 321 PAENAEDIEADAYWCLSKLLDGIQDNY-TFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREF 399 (484)
T ss_pred cHHHHhhhhhhHHHHHHHHHHHhhhhh-hhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhc
Confidence 7799999999999986666 5567888888889999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCch--HHHHHHHHHHHHhhHHhhcCCCHHHHHHHHHhccCCCCCHHHHHH
Q 041508 440 PWESVLRIWDVLLFEGNRV--MLFRTALALMELYGPALVTTKDAGDAVTLLQTLAGSTFDSSQLVL 503 (854)
Q Consensus 440 Ple~vLRIWD~ff~eG~~f--~LFrvaLAIL~~~re~LL~~~D~~Eil~lLq~Lp~~~~D~~~LI~ 503 (854)
|+..++||||.|++++..| ++.+||+|+|..++++|+ ..||.+++.+||++|.+.|.-.+|-.
T Consensus 400 pl~~~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~-e~DFQ~~ilfLQnlPT~~W~d~eIel 464 (484)
T KOG1092|consen 400 PLRCTIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELM-ENDFQELILFLQNLPTHNWSDREIEL 464 (484)
T ss_pred cchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhcCCCCCccHHHHHH
Confidence 9999999999999996655 345599999999999999 47999999999999999997665543
No 6
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=8.5e-35 Score=335.30 Aligned_cols=236 Identities=37% Similarity=0.619 Sum_probs=208.3
Q ss_pred CCHHHHHHHHhCCCCchhHHHHHHHHhcCccCC--ChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhhh
Q 041508 233 PWKEELEVLVRGGLPMALRGELWQAFVGVRARR--VDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWK 310 (854)
Q Consensus 233 ~~~ekLk~Lir~GIP~~LR~~VW~lLLGi~~~~--~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~ 310 (854)
....+++.+++.|||+.+|+.||..++|+.... ....|..++....... . ....+.
T Consensus 200 ~~~~~~~~~i~~gip~~~r~~vw~~~~~~~~~~~~~~~~y~~~~~~~~~~~-------------------~---~~~~~~ 257 (496)
T COG5210 200 VQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYERLLNLHREAK-------------------I---PTQEII 257 (496)
T ss_pred hhHHHHHHHHHhcCChHhhhhhHHHHhccchhhccCchHHHHHHHHHHhcC-------------------C---CcHHHH
Confidence 345689999999999999999999999998754 3677777766544220 0 000357
Q ss_pred hhhhhcCCcCCCCCCCCC-hhhHHH--HHHHHHHHHhhCCCCCccccchHHHHHHhhcCC-hHHHHHHHHHhhHh-hhcC
Q 041508 311 GQIEKDLPRTFPGHPALD-NDGRNA--LRRLLTAYARHNPSVGYCQAMNFFAALLLLLMP-EENAFWALMGILDD-YFDG 385 (854)
Q Consensus 311 ~qIekDV~RTfp~~~~F~-e~g~~~--LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~-EedAFw~f~~Lm~~-~l~~ 385 (854)
.+|++||.||||.+.+|+ ..++.. |+|||.+|+.+||.+|||||||+|+++||++|+ |++|||||++||.+ +++.
T Consensus 258 ~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~~ 337 (496)
T COG5210 258 SQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPG 337 (496)
T ss_pred HHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccchh
Confidence 899999999999999995 344444 999999999999999999999999999999998 99999999999995 4899
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHHHHHHH
Q 041508 386 YYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTAL 465 (854)
Q Consensus 386 yfs~~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~LFrvaL 465 (854)
+|..++.|++.++.++..+++..+|+||.||...|+...+|+++||+|+|.+++|++.++||||++|++|..+ +|.+++
T Consensus 338 ~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~-l~~~~~ 416 (496)
T COG5210 338 YFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSM-LFQLAL 416 (496)
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHH-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHHhhHHhhcCCCHHHHHHHHHhc
Q 041508 466 ALMELYGPALVTTKDAGDAVTLLQTL 491 (854)
Q Consensus 466 AIL~~~re~LL~~~D~~Eil~lLq~L 491 (854)
|++...+..++.+.+...+..++..+
T Consensus 417 ~~l~~~~~~l~~~~~~~~~~~~~~~~ 442 (496)
T COG5210 417 AILKLLRDKLLKLDSDELLDLLLKQL 442 (496)
T ss_pred HHHHhhhhhhhccCchhHHHHHHHhh
Confidence 99999999999988776666666544
No 7
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.8e-33 Score=304.71 Aligned_cols=249 Identities=31% Similarity=0.595 Sum_probs=224.0
Q ss_pred CCHHHHHHHHh-CCCCchhHHHHHHHHhcCccCC--ChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhh
Q 041508 233 PWKEELEVLVR-GGLPMALRGELWQAFVGVRARR--VDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKW 309 (854)
Q Consensus 233 ~~~ekLk~Lir-~GIP~~LR~~VW~lLLGi~~~~--~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~ 309 (854)
+..++++.+++ +|||+.+|+.+|+.|.|..... .+..|.++++...+- . -.+
T Consensus 157 ~ktdk~~~llkeggiphslr~~lw~rlsga~~kkk~ae~sy~~ilk~~and---------------------k----~~~ 211 (848)
T KOG2222|consen 157 LKTDKFEELLKEGGIPHSLRAFLWMRLSGALAKKKDAETSYEDILKACAND---------------------K----LMI 211 (848)
T ss_pred cchHHHHHHHHcCCCCcchhHHHHHHhhhhhhhhccccccHHHHHHHhccc---------------------c----cch
Confidence 45678999887 6799999999999999987643 456788887765421 0 124
Q ss_pred hhhhhhcCCcCCCCCCCC---ChhhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcCChHHHHHHHHHhhHhhh-cC
Q 041508 310 KGQIEKDLPRTFPGHPAL---DNDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYF-DG 385 (854)
Q Consensus 310 ~~qIekDV~RTfp~~~~F---~e~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~EedAFw~f~~Lm~~~l-~~ 385 (854)
..||++|+-|++|++..| ++.|+..|+|||.+.++..|++||||||..|++.||++|.|+.|||++..+++..+ ++
T Consensus 212 ~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~ee~afwmmaaiiedilp~n 291 (848)
T KOG2222|consen 212 GKQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCEEENAFWMMAAIIEDILPAN 291 (848)
T ss_pred hHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhcchhHHHHHHHHHHHhcCch
Confidence 689999999999999999 35789999999999999999999999999999999999999999999999999986 58
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHHHHHHH
Q 041508 386 YYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTAL 465 (854)
Q Consensus 386 yfs~~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~LFrvaL 465 (854)
||+....|++.+..++..|+.-|.|.|-..|..+.|...+.+..||+|||+.+|.....+||||.||++|.-. +|++.+
T Consensus 292 fysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i~-ifql~i 370 (848)
T KOG2222|consen 292 FYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGIN-IFQLII 370 (848)
T ss_pred hhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcch-hHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 999999
Q ss_pred HHHHHhhHHhhcC----CCHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 041508 466 ALMELYGPALVTT----KDAGDAVTLLQTLAGSTFDSSQLVLTACM 507 (854)
Q Consensus 466 AIL~~~re~LL~~----~D~~Eil~lLq~Lp~~~~D~~~LI~~A~~ 507 (854)
.||+..+..|... .+..+|+..|..+|..-.|+..++..+-.
T Consensus 371 ~ilkmkeqdi~~iaettensa~if~als~ip~~vtdve~l~~~~~~ 416 (848)
T KOG2222|consen 371 GILKMKEQDIKEIAETTENSADIFNALSDIPAEVTDVEKLFEQAGE 416 (848)
T ss_pred HHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHhh
Confidence 9999999888755 68889999999999999999999988753
No 8
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=1.1e-32 Score=279.75 Aligned_cols=169 Identities=40% Similarity=0.753 Sum_probs=152.6
Q ss_pred hhhhhhhhhcCCcCCCCCCCC-ChhhHHHHHHHHHHHHhhCCCCCccccchHHHHHHh-hcCChHHHHHHHHHhhHhhhc
Q 041508 307 EKWKGQIEKDLPRTFPGHPAL-DNDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLL-LLMPEENAFWALMGILDDYFD 384 (854)
Q Consensus 307 e~~~~qIekDV~RTfp~~~~F-~e~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LL-lvm~EedAFw~f~~Lm~~~l~ 384 (854)
.+..++|.+||.||++....+ .+.++..|.+||.+|+.++|++||||||+.|+++|+ .+++|++|||||+.++...++
T Consensus 44 ~~~~~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~ 123 (214)
T PF00566_consen 44 NKIFEQIDKDVNRTFPNSFLFKNEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLP 123 (214)
T ss_dssp HTCHHHHHHHHCTSSTSCCCSTTHHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGG
T ss_pred chHHHHHHHhhhhhcccchhhhhcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhccccc
Confidence 345799999999999955555 467789999999999999999999999999999999 566889999999999977789
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHHHHHH
Q 041508 385 GYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTA 464 (854)
Q Consensus 385 ~yfs~~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~LFrva 464 (854)
.+|..+..+++..+.+++.+++.++|+|++||.+.|+.+..|+++||+|+|++.+|.+.++|||| ++.+|.++.+++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~~~l~~~~ 202 (214)
T PF00566_consen 124 DFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYKFFLFFIA 202 (214)
T ss_dssp GGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTTHHHHHHH
T ss_pred ccccccccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCCcHHHHHH
Confidence 99999988899988999999999999999999999999999999999999999999999999999 77799988788899
Q ss_pred HHHHHHhhHHhh
Q 041508 465 LALMELYGPALV 476 (854)
Q Consensus 465 LAIL~~~re~LL 476 (854)
+|||...++.||
T Consensus 203 lail~~~~~~il 214 (214)
T PF00566_consen 203 LAILKYLRDQIL 214 (214)
T ss_dssp HHHHHHTHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999999886
No 9
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=311.41 Aligned_cols=268 Identities=38% Similarity=0.646 Sum_probs=234.2
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhcCccCC--ChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhhhhh
Q 041508 235 KEELEVLVRGGLPMALRGELWQAFVGVRARR--VDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQ 312 (854)
Q Consensus 235 ~ekLk~Lir~GIP~~LR~~VW~lLLGi~~~~--~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~~q 312 (854)
..+++++++.|||..+|+.+|..+.|..... ..++|.+++.+.... ..-....
T Consensus 192 t~~~~Klv~~gipe~~rgeiW~l~sGav~~~l~~~Geygkll~~~~G~-------------------------~~~a~eE 246 (671)
T KOG4347|consen 192 TILLRKLLYNGFPEDPRGEIWYLASGAVASLLLNPGEYGKLLHSVTGK-------------------------RSVATEE 246 (671)
T ss_pred HHHHHHHHHHhcCCChHHHHHHhhhHHHHHhhcCcHHhhhhhhcccCC-------------------------ccccccc
Confidence 3579999999999999999999999986543 468888888765421 1123467
Q ss_pred hhhcCCcCCCCCCCCC-hhhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcCChHHHHHHHHHhhHhhhcCCCCchh
Q 041508 313 IEKDLPRTFPGHPALD-NDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYFDGYYSEEM 391 (854)
Q Consensus 313 IekDV~RTfp~~~~F~-e~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~EedAFw~f~~Lm~~~l~~yfs~~~ 391 (854)
|++|++|..|.|+.|+ +.|...|+|||.||++.||+|||||.||.+++.+|+++.|+.|||+++.+++.++++||+..+
T Consensus 247 IE~Dl~rsLpEhpA~Q~e~gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~~EEeafwll~~lce~~ip~yys~~v 326 (671)
T KOG4347|consen 247 IEPDLGRSLPEHPAFQSEPGIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFCKEEEAFWLLSKLCEIYIPDYYSKTV 326 (671)
T ss_pred ccCCCCCCCCcchhhhCCCchhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhhccchHHHHHHHHHHHhcccccchhh
Confidence 9999999999999996 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 041508 392 IESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELY 471 (854)
Q Consensus 392 ~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~LFrvaLAIL~~~ 471 (854)
.|..+++.+|+.|++.+.|.||.|+..+| ...+..++||+|+|...+|++..+||.|+||.+|+++ ||.++||||..+
T Consensus 327 vGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~rv-lFqiaLail~~N 404 (671)
T KOG4347|consen 327 VGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPRV-LFQIALAILKQN 404 (671)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhcccHH-HHHHHHHHHHhh
Confidence 99999999999999999999999999999 7889999999999999999999999999999999998 999999999999
Q ss_pred hHHhhcCCCHHHHHHHHHhccCC---------------CCCHHHHHHHHHHhhhh------------cchHHHHHHHHHh
Q 041508 472 GPALVTTKDAGDAVTLLQTLAGS---------------TFDSSQLVLTACMGYQN------------HRPAVVAAVEERS 524 (854)
Q Consensus 472 re~LL~~~D~~Eil~lLq~Lp~~---------------~~D~~~LI~~A~~~~~~------------~r~~V~~~le~r~ 524 (854)
.+.|+++.|.++++.+|.+.-.+ .+.+..|+.+|+..|.. |+..|++.++-.+
T Consensus 405 ~~~il~~~dDge~~~vl~~y~~~i~~~~~~~~~~~~~~~~~i~~Ll~~ay~kFg~it~e~ie~~R~K~r~~v~q~le~~~ 484 (671)
T KOG4347|consen 405 AERILSATDDGEAMMVLGNYFDSIYNGDYPDESDHASDSIEIQDLLATAYEKFGDITDELIEHLRKKHRLGVLQSLEDFT 484 (671)
T ss_pred HHHhcccCCchHHHHHHHHHHHhccCCCCCccccchhhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999888764221 12244677788766653 6667777777766
Q ss_pred hhhhh
Q 041508 525 KGLLA 529 (854)
Q Consensus 525 k~~~~ 529 (854)
|+...
T Consensus 485 krt~l 489 (671)
T KOG4347|consen 485 KRTIL 489 (671)
T ss_pred HHHHH
Confidence 66543
No 10
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.97 E-value=3.9e-31 Score=295.74 Aligned_cols=255 Identities=22% Similarity=0.356 Sum_probs=216.7
Q ss_pred cccccCCCHHHHHHHHhCCCCchhHHHHHHHHhcCccCCChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCc
Q 041508 227 TLQSLFPWKEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLP 306 (854)
Q Consensus 227 ~le~~~~~~ekLk~Lir~GIP~~LR~~VW~lLLGi~~~~~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~ 306 (854)
.+.++-.....+.+..++|||+-+|+.+|..|||+.......| .++++.+.
T Consensus 337 Ll~g~~~k~~qI~r~a~vdvpp~~R~~iW~aLL~l~e~~~a~y--~~IDk~Ts--------------------------- 387 (725)
T KOG1093|consen 337 LLDGYPKKRLQILREAYVDVPPLYRGFIWAALLQLEENHTAFY--TLIDKGTS--------------------------- 387 (725)
T ss_pred hhccchHHHHHHHHHhccCCChhHhHHHHHHHhcCccccchhh--hhhhcCCC---------------------------
Confidence 3334333344566667789999999999999999877665433 23333221
Q ss_pred hhhhhhhhhcCCcCCCCCCCC-ChhhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcC--ChHHHHHHHHHhhHhhh
Q 041508 307 EKWKGQIEKDLPRTFPGHPAL-DNDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLM--PEENAFWALMGILDDYF 383 (854)
Q Consensus 307 e~~~~qIekDV~RTfp~~~~F-~e~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm--~EedAFw~f~~Lm~~~l 383 (854)
-...+||+.|++||+...... ...|+++|+|+|++|+.++|.+.|.||+..+++|||+.+ ++..||.|+..|+-+|+
T Consensus 388 ~~tdrqievdiprchQyd~~lsSp~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kyc 467 (725)
T KOG1093|consen 388 HSTDRQIEVDIPRCHQYDELLSSPKGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYC 467 (725)
T ss_pred CcchhhhhcccchhhhcccccCCHHHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHH
Confidence 123589999999999887776 467899999999999999999999999999999998764 78999999999999999
Q ss_pred cCCCCc-hhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHHHH
Q 041508 384 DGYYSE-EMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFR 462 (854)
Q Consensus 384 ~~yfs~-~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~LFr 462 (854)
.+||.. +...++..+.+|.+++..|||+|++||..+|+.+..|+++||+|+|+++||++.++.+||.+|..++.| .++
T Consensus 468 q~fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~SF-plm 546 (725)
T KOG1093|consen 468 QHFFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSSF-PLM 546 (725)
T ss_pred HHHHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCcc-HHH
Confidence 999877 556677888999999999999999999999999999999999999999999999999999999999999 666
Q ss_pred HHHHHHHHhhHHhhcCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcch
Q 041508 463 TALALMELYGPALVTTKDAGDAVTLLQTLAGSTFDSSQLVLTACMGYQNHRP 514 (854)
Q Consensus 463 vaLAIL~~~re~LL~~~D~~Eil~lLq~Lp~~~~D~~~LI~~A~~~~~~~r~ 514 (854)
+++||+...++.||.| .+.|.+.++.++| ++|++.+|.+.+..|-..++
T Consensus 547 i~vAil~~lR~~LLa~-nfne~illf~d~p--dldId~~Ires~~l~e~tP~ 595 (725)
T KOG1093|consen 547 IGVAILIQLRDPLLAC-NFNECILLFSDLP--DLDIDVCIRESYHLMETTPK 595 (725)
T ss_pred HHHHHHHHhhhhhhhC-CchhheeeeccCC--cccHHHHHHHHhhhhhCCCC
Confidence 9999999999999986 8899999999887 88999999887665554443
No 11
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.94 E-value=2e-26 Score=265.25 Aligned_cols=230 Identities=33% Similarity=0.557 Sum_probs=203.6
Q ss_pred CHHHHHHHHhCCCCchhHHHHHHHHhcCc------c---CCChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCC
Q 041508 234 WKEELEVLVRGGLPMALRGELWQAFVGVR------A---RRVDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVC 304 (854)
Q Consensus 234 ~~ekLk~Lir~GIP~~LR~~VW~lLLGi~------~---~~~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~ 304 (854)
..+.+-..++.|||..-||.+|.+|.--. + +...--|..+++.-+
T Consensus 566 d~ed~~~~l~~gvprsrrgeiwtflA~q~~~~~~l~~~kr~~~~p~~~llkqLt-------------------------- 619 (948)
T KOG4436|consen 566 DMEDLHSALRTGVPRSRRGEIWTFLAEQHSLNHALPDKKRPPDFPYKELLKQLT-------------------------- 619 (948)
T ss_pred cHHHHHHHHHccCchhhhHHHHHHHHHHHHHhccCCcccCCCCCChHHHHHHHH--------------------------
Confidence 45778888999999999999999986321 1 111233444544433
Q ss_pred CchhhhhhhhhcCCcCCCCCCCCC---hhhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcCChHHHHHHHHHhhHh
Q 041508 305 LPEKWKGQIEKDLPRTFPGHPALD---NDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDD 381 (854)
Q Consensus 305 ~~e~~~~qIekDV~RTfp~~~~F~---e~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~EedAFw~f~~Lm~~ 381 (854)
+..+.|..|+.||||+|++|. ..|+..|.++|.+|+..+|++|||||+.+||++||++|+|+.||-++-.||-.
T Consensus 620 ---e~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~e~~afellk~LM~~ 696 (948)
T KOG4436|consen 620 ---EQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMSEENAFELLKFLMFD 696 (948)
T ss_pred ---HHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcchhhHHHHHHHHHHH
Confidence 225779999999999999995 57899999999999999999999999999999999999999999999999976
Q ss_pred h-hcCCCCchhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHH
Q 041508 382 Y-FDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVML 460 (854)
Q Consensus 382 ~-l~~yfs~~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~L 460 (854)
. ++.-|.++|..++..++.+..++..+.+.||+||+.+.|.|..|+.+||+|+|+..||+..+.||+|.+|..|..+ +
T Consensus 697 r~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~tev-i 775 (948)
T KOG4436|consen 697 RGMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTEV-I 775 (948)
T ss_pred HhhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccch-h
Confidence 5 4556789999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHhhHHhhcCCCHHHHHHHHHhccC
Q 041508 461 FRTALALMELYGPALVTTKDAGDAVTLLQTLAG 493 (854)
Q Consensus 461 FrvaLAIL~~~re~LL~~~D~~Eil~lLq~Lp~ 493 (854)
|.+++++|..++..|+.+.++++|+.++++..+
T Consensus 776 fK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~p 808 (948)
T KOG4436|consen 776 FKVALSLLSVHKQLLLEKDNFEEIVDFLKTTLP 808 (948)
T ss_pred hhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhhh
Confidence 999999999999999999999999999998644
No 12
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.92 E-value=3.3e-25 Score=249.15 Aligned_cols=240 Identities=33% Similarity=0.523 Sum_probs=203.1
Q ss_pred CHHHHHHHHhCCCCchhHHHHHHHHhcCccCC----ChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhh
Q 041508 234 WKEELEVLVRGGLPMALRGELWQAFVGVRARR----VDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKW 309 (854)
Q Consensus 234 ~~ekLk~Lir~GIP~~LR~~VW~lLLGi~~~~----~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~ 309 (854)
...++...+..|||..+|+.+|+++++..... ....|...+.... ...
T Consensus 134 ~~~~l~~~~~~gip~~~r~~~W~l~~~~~~~~~~~~~~~l~~~~~~~~~----------------------------~~~ 185 (397)
T KOG1102|consen 134 RPLKLSRRVLVGIPDELRGLVWQLLLYAVEESLFDSLDELYRLQLDEPE----------------------------PHE 185 (397)
T ss_pred cHHHHHHHhhccccHHHHHHHHHHhcccHhhhhhhhHHHHHHHhhccCC----------------------------Cch
Confidence 34578888889999999999999999863221 1122222111100 011
Q ss_pred hhhhhhcCCcCCCCCCCCCh---hhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcCChHHHHHHHHHhhHhhhcCC
Q 041508 310 KGQIEKDLPRTFPGHPALDN---DGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYFDGY 386 (854)
Q Consensus 310 ~~qIekDV~RTfp~~~~F~e---~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~EedAFw~f~~Lm~~~l~~y 386 (854)
..+| .|+.||||.+..|.. .++++|.+||.+|+.++|.+||||||..+++++++++++++|||+++.+|..+-.++
T Consensus 186 ~~~~-~d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~ee~af~~lv~l~~~~~~~~ 264 (397)
T KOG1102|consen 186 SEII-RDLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLPEEEAFPLLVKLMKNYGLDL 264 (397)
T ss_pred hHHH-hhccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCchhhhhhhhhhhhhccchhc
Confidence 3566 999999999999964 679999999999999999999999999999999999999999999999999986555
Q ss_pred CCchhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHHHHHHHH
Q 041508 387 YSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALA 466 (854)
Q Consensus 387 fs~~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~LFrvaLA 466 (854)
|..+..+++.....+..+++...|.++.|+...++...+|+..|++|+|+..+|++.++||||++|.+|..+ +|+++++
T Consensus 265 ~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~i-~~~~~~~ 343 (397)
T KOG1102|consen 265 LSPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVSI-LFRFSLA 343 (397)
T ss_pred ccccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchHH-HHHHHHH
Confidence 688888999999999999999999999999999999999999999999999999999999999999999665 8999999
Q ss_pred HHHHhhHHhhcCCCHHHHHHHHHhccCCCCCHHHHHHH
Q 041508 467 LMELYGPALVTTKDAGDAVTLLQTLAGSTFDSSQLVLT 504 (854)
Q Consensus 467 IL~~~re~LL~~~D~~Eil~lLq~Lp~~~~D~~~LI~~ 504 (854)
+++...+.++.. +++.++.+++......+|.......
T Consensus 344 l~~~~~~~~~~~-~~e~~~~~l~~~~~~~~~~~~~~~~ 380 (397)
T KOG1102|consen 344 LLKHKADDLLDL-DFESLLSYLRVDLPKSYDSELSDKY 380 (397)
T ss_pred HhhhhhHHHhhc-cHHHHHHHHhcccHhhcCccchhHH
Confidence 999999999986 4999999999877666666544443
No 13
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.5e-24 Score=239.71 Aligned_cols=258 Identities=21% Similarity=0.322 Sum_probs=192.7
Q ss_pred chhHHHHHHHHhcCccCCChHHHHHHHHHhhhccCcccccc----------CCC------CCCCCCCCCCCCCCchhhhh
Q 041508 248 MALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHS----------SQS------DNDSKSSTKDSVCLPEKWKG 311 (854)
Q Consensus 248 ~~LR~~VW~lLLGi~~~~~e~~Y~~LL~k~~~~~~~~~q~~----------~~~------~~~~~~~~~~s~~~~e~~~~ 311 (854)
..+|+.+|+++||+.+.....+-..+......|......+. .+. ......+.|..++.+.+...
T Consensus 27 s~~Rgv~Wrl~L~vLp~~~ss~id~~~~~ra~~r~~r~~~L~dPh~~k~~~s~d~~idnPLSq~~~S~W~rfF~d~EL~~ 106 (625)
T KOG1091|consen 27 SNLRGVRWRLLLGVLPSENSSWIDNLRRLRANYRRLRRRLLIDPHNLKENHSPDLPIDNPLSQNPQSVWNRFFRDAELEK 106 (625)
T ss_pred hhhhhHHHHHhheecCCCchhHHHHHHHHhhhhhccccccccCccccccccCCCcccCCccccCCCchhhhhcCcHHHHH
Confidence 47899999999999998765555555554444432111110 000 01112234777899999999
Q ss_pred hhhhcCCcCCCCC-CCCChhh-HHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcCC--------------------hH
Q 041508 312 QIEKDLPRTFPGH-PALDNDG-RNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMP--------------------EE 369 (854)
Q Consensus 312 qIekDV~RTfp~~-~~F~e~g-~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~--------------------Ee 369 (854)
.|+.||.||||.+ .||+.++ +..|++||..|+..+|.+||-|||+.+.+++++++- |.
T Consensus 107 ~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~f~E~ 186 (625)
T KOG1091|consen 107 TIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLGFEER 186 (625)
T ss_pred hhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcCcchh
Confidence 9999999999999 7887554 789999999999999999999999999999876531 11
Q ss_pred -----------HHH--HHHHHhhHhh---h---cCCC-----------------CchhHHHHHHHHHHHHHHHhhccchh
Q 041508 370 -----------NAF--WALMGILDDY---F---DGYY-----------------SEEMIESQVDQLVFEELVRERFPKLV 413 (854)
Q Consensus 370 -----------dAF--w~f~~Lm~~~---l---~~yf-----------------s~~~~~l~~~~~vLe~LLk~~dPeL~ 413 (854)
+++ -+|+.+|..- . .+++ ....+.+.....++.++|..+|+.||
T Consensus 187 d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D~~Lh 266 (625)
T KOG1091|consen 187 DVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVDKSLH 266 (625)
T ss_pred hhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhccHHHH
Confidence 222 2444444221 0 0010 11122333444578999999999999
Q ss_pred hhhhhcCCccccchhhhHHhhcccCCChHHHHHHHH-HHHhcCCchHHH-HHHHHHHHHhhHHhhcCCCHHHHHHHHHhc
Q 041508 414 NHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWD-VLLFEGNRVMLF-RTALALMELYGPALVTTKDAGDAVTLLQTL 491 (854)
Q Consensus 414 ~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD-~ff~eG~~f~LF-rvaLAIL~~~re~LL~~~D~~Eil~lLq~L 491 (854)
.||..+||.|.+|.++|+..||.++||+.+++.||| ++|++++...|. +++++||.+.++.|+...... .+++|-++
T Consensus 267 ~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss~~~t-cL~~Lm~y 345 (625)
T KOG1091|consen 267 SHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSSEYQT-CLQYLMNY 345 (625)
T ss_pred HHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcchh-HHHHHhcC
Confidence 999999999999999999999999999999999999 888888887554 488999999999999865554 88888877
Q ss_pred cCCCCCHHHHHHHHHH
Q 041508 492 AGSTFDSSQLVLTACM 507 (854)
Q Consensus 492 p~~~~D~~~LI~~A~~ 507 (854)
| .+.|++.+|..|..
T Consensus 346 P-~~~Dv~~~iekAl~ 360 (625)
T KOG1091|consen 346 P-EIIDVDKFIEKALH 360 (625)
T ss_pred C-CcCcHHHHHHHHHH
Confidence 5 57899999998864
No 14
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.91 E-value=1.3e-24 Score=236.22 Aligned_cols=247 Identities=20% Similarity=0.369 Sum_probs=163.4
Q ss_pred HHH-HHHhCCCCchhHHHHHHHHhcCccCCChHHHHHH--HHHhhhccCccccccCCCCCCCCCCCCCCCCCchhhhhhh
Q 041508 237 ELE-VLVRGGLPMALRGELWQAFVGVRARRVDKYYQDL--LSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQI 313 (854)
Q Consensus 237 kLk-~Lir~GIP~~LR~~VW~lLLGi~~~~~e~~Y~~L--L~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~~qI 313 (854)
+|+ .++.+||...+|+.||++||..+.......-+.. ..+..+|.+...+............+|. ...-.+
T Consensus 426 ~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysmspeeh~~fwk------nvq~tv 499 (781)
T KOG2224|consen 426 KLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSMSPEEHIAFWK------NVQFTV 499 (781)
T ss_pred HhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHh------heEEEE
Confidence 444 4677999999999999999998765432111111 1122222111111000000000000000 012257
Q ss_pred hhcCCcCCCCCCCCC---hhhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcC-C----------------------
Q 041508 314 EKDLPRTFPGHPALD---NDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLM-P---------------------- 367 (854)
Q Consensus 314 ekDV~RTfp~~~~F~---e~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm-~---------------------- 367 (854)
++||-||.++++||. +++..++++||..|+.|||.+||.|||+++.++.|.-. +
T Consensus 500 dkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapi 579 (781)
T KOG2224|consen 500 DKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPI 579 (781)
T ss_pred ecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhH
Confidence 899999999999994 46789999999999999999999988887776665432 4
Q ss_pred ------hHHHHHHHHHhhHhhhcCCCCchhHHHHHHHHHHHHHHHhhccchhhhhhhcCCcc--ccchhhhHHhhcccCC
Q 041508 368 ------EENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQV--AWVTGPWFLSIFMNML 439 (854)
Q Consensus 368 ------EedAFw~f~~Lm~~~l~~yfs~~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~--~~fa~rWflTLFs~eL 439 (854)
|.++||||+.+|.+.+.- .++....+...+..+..|++...|..|+||..+|-+. .+||.+|++.+|.++|
T Consensus 580 laevldesdtfwcfvglmqna~fv-~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref 658 (781)
T KOG2224|consen 580 LAEVLDESDTFWCFVGLMQNAFFV-CSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREF 658 (781)
T ss_pred HHhhhccccchhhhhhhhcceEEE-eCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcc
Confidence 445555555555432100 1233334445566789999999999999999998543 4699999999999999
Q ss_pred ChHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhHHhhcCC-CHHHHHHHHHhc
Q 041508 440 PWESVLRIWDVLLFE--GNRVMLFRTALALMELYGPALVTTK-DAGDAVTLLQTL 491 (854)
Q Consensus 440 Ple~vLRIWD~ff~e--G~~f~LFrvaLAIL~~~re~LL~~~-D~~Eil~lLq~L 491 (854)
|-..++|||...|++ .+-|.|| +|+||+-.+.+.++..+ -.++++--+-++
T Consensus 659 ~ea~airiweacwa~y~tdyfhlf-iclaiiaiy~ddvi~q~l~~demllhf~nl 712 (781)
T KOG2224|consen 659 PEAEAIRIWEACWAHYLTDYFHLF-ICLAIIAIYADDVIAQNLAPDEMLLHFGNL 712 (781)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhhhHHHHhhcCchhHHHhhhhh
Confidence 999999999999976 3445444 99999999998877644 445555444444
No 15
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.5e-23 Score=211.58 Aligned_cols=168 Identities=33% Similarity=0.568 Sum_probs=151.2
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhcCccCC--ChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhhhhhhh
Q 041508 237 ELEVLVRGGLPMALRGELWQAFVGVRARR--VDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQIE 314 (854)
Q Consensus 237 kLk~Lir~GIP~~LR~~VW~lLLGi~~~~--~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~~qIe 314 (854)
+|+--|+.|||+.+|+..|++|.|..... .+..|+.+..... +..+.+.|.
T Consensus 95 ~ir~rcrkgippslr~Raw~ylsGa~~~~~~np~~~~~~~~~pG---------------------------~p~t~e~i~ 147 (267)
T KOG2221|consen 95 KIRPRCRKGIPPSLRGRAWRYLSGAPSPPPKNPVVFDELGPAPG---------------------------DPKTAEGIH 147 (267)
T ss_pred cccchhhcCCCcccchhHHHhhcCCCCCCCCCcchhhhccCCCC---------------------------CCcchhhhc
Confidence 56778999999999999999999987544 3556665543332 225678899
Q ss_pred hcCCcCCCCCCCCC---hhhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcCChHHHHHHHHHhhHhhhcCCCCchh
Q 041508 315 KDLPRTFPGHPALD---NDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYFDGYYSEEM 391 (854)
Q Consensus 315 kDV~RTfp~~~~F~---e~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~EedAFw~f~~Lm~~~l~~yfs~~~ 391 (854)
+|++|-||.|..|. ..|+..|+|+|.+|.+++|+.||||+-..|++++|+.|++.+|||||+.+++.|+++||+..+
T Consensus 148 kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp~rdaf~~~vqicekylqgy~~sgl 227 (267)
T KOG2221|consen 148 KDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMPARDAFWCFVQICEKYLQGYYSSGL 227 (267)
T ss_pred cccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhcccHHHHHHHHHHHHHHHcccccccch
Confidence 99999999999994 456899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhH
Q 041508 392 IESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWF 431 (854)
Q Consensus 392 ~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWf 431 (854)
..++.+-.++..|+++.+|-.|.||...++++..|...||
T Consensus 228 eaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 228 EAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred hhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 9999999999999999999999999999999999999997
No 16
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.87 E-value=2.5e-21 Score=207.44 Aligned_cols=248 Identities=17% Similarity=0.233 Sum_probs=196.8
Q ss_pred HHHHHHHh--CC-CCchhHHHHHHHHhcCccCCCh-HHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhhhh
Q 041508 236 EELEVLVR--GG-LPMALRGELWQAFVGVRARRVD-KYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKG 311 (854)
Q Consensus 236 ekLk~Lir--~G-IP~~LR~~VW~lLLGi~~~~~e-~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~~ 311 (854)
+.|+.+.. +| +.+++|+.||+.|+|..-+..+ ..+....+.+ +...
T Consensus 49 ~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~~~~~~~~~q~h------------------------------kd~n 98 (395)
T KOG2595|consen 49 DALRYIGLSPGGLVNDSLRKDVWPELLALNINHLDATSTLTPVQKH------------------------------KDYN 98 (395)
T ss_pred HHHHHhccCCCccccHHHHHHHHHHHhccccCCCcccccCChhhhC------------------------------cccc
Confidence 44555443 23 3679999999999997665431 1111111111 2357
Q ss_pred hhhhcCCcCCCCCCCC----Ch-hhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcCChHHHHHHHHHhhHhhhcCC
Q 041508 312 QIEKDLPRTFPGHPAL----DN-DGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYFDGY 386 (854)
Q Consensus 312 qIekDV~RTfp~~~~F----~e-~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~EedAFw~f~~Lm~~~l~~y 386 (854)
|+..|+.|+|...+-- .. ..+..|..++......+|.+.|.||.|+||..||++++|.+|+-++..+-..++++|
T Consensus 99 QV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~gE~~Al~l~E~L~~~~lrdf 178 (395)
T KOG2595|consen 99 QVILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVGELEALSLMEELSTLHLRDF 178 (395)
T ss_pred eEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhhhHhhhHHHHHHHHHHHHHH
Confidence 8999999998665531 12 336778888888889999999999999999999999999999999999998889999
Q ss_pred CCchhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCC-hHHHHHHHHHHHhcCCchHHHHHHH
Q 041508 387 YSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLP-WESVLRIWDVLLFEGNRVMLFRTAL 465 (854)
Q Consensus 387 fs~~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLP-le~vLRIWD~ff~eG~~f~LFrvaL 465 (854)
+.+.+.+....+..+..+++..+|+||+.|.+-.+. .+|+.+|++|||+|.+. +..++|++|+|++..+-..+ +++.
T Consensus 179 M~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevg-tlFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~pi-yv~A 256 (395)
T KOG2595|consen 179 MLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVG-TLFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLPI-YVYA 256 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhccc-ceehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchhH-HHHH
Confidence 999999988889999999999999999999988885 56899999999999985 78999999999999887644 4999
Q ss_pred HHHHHhhHHhhcCC-CHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcchHH
Q 041508 466 ALMELYGPALVTTK-DAGDAVTLLQTLAGSTFDSSQLVLTACMGYQNHRPAV 516 (854)
Q Consensus 466 AIL~~~re~LL~~~-D~~Eil~lLq~Lp~~~~D~~~LI~~A~~~~~~~r~~V 516 (854)
+++..++..|++|. |..-+-.+|..+ +.....+.+|..+|..+...+.+.
T Consensus 257 ~vvL~r~~eIl~~~~dms~~H~lLs~i-Pq~lp~d~lik~s~~~i~~~~~t~ 307 (395)
T KOG2595|consen 257 AVVLYRRSEILKCDCDMSLLHGLLSTI-PQDLPYDTLIKESVLLITRKPATL 307 (395)
T ss_pred HHhhhhHHHHHHHHhhhHHHHHHHHhC-ccccCHHHHHHHHHHHHhcCChhh
Confidence 99999999999987 444333445555 456788899999998888766543
No 17
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.83 E-value=9.2e-21 Score=217.60 Aligned_cols=258 Identities=22% Similarity=0.314 Sum_probs=189.9
Q ss_pred HHHhCCCCchhHHHHHHHHhcCccCCChHH---HHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhhhhhhhhc
Q 041508 240 VLVRGGLPMALRGELWQAFVGVRARRVDKY---YQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQIEKD 316 (854)
Q Consensus 240 ~Lir~GIP~~LR~~VW~lLLGi~~~~~e~~---Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~~qIekD 316 (854)
.++++|+-+.+|+.+|+.++++.+...... +...+ ..++.....+ |........ ..... .......|.+|
T Consensus 172 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~k~q--W~~~~~~~~--~~~~~-~~~~~~~i~~d 244 (488)
T KOG2197|consen 172 RIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL--TDEYFRLKLQ--WSSTSPEQS--PESEG-YLERKSRIEKD 244 (488)
T ss_pred eecccccccchhhhhhhhhhcccCcccccccccccccc--cccHhhhhhh--heecccccc--ccccc-hhhhhhhhhhh
Confidence 677888877999999999999887543221 10011 1111000000 100100000 01111 12345789999
Q ss_pred CCcCCCCCCCCC-hh--hHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcC-ChHHHHHHHHHhhHhhhcCCCCchhH
Q 041508 317 LPRTFPGHPALD-ND--GRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLM-PEENAFWALMGILDDYFDGYYSEEMI 392 (854)
Q Consensus 317 V~RTfp~~~~F~-e~--g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm-~EedAFw~f~~Lm~~~l~~yfs~~~~ 392 (854)
|.||.+.+.++. .. ....|..||.+|+.+++++||||||+++.++++.++ +|.+|||||+.||+...++|. .+..
T Consensus 245 v~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~~~nF~-~d~~ 323 (488)
T KOG2197|consen 245 VGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRLRHNFR-IDQS 323 (488)
T ss_pred ccccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHHhhcCc-cccc
Confidence 999999999884 23 478999999999999999999999999999999998 578999999999999777774 4556
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcC--CchHHHHHHHHHHHH
Q 041508 393 ESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEG--NRVMLFRTALALMEL 470 (854)
Q Consensus 393 ~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG--~~f~LFrvaLAIL~~ 470 (854)
+++..+..+..+++..||.||.||+.++....+|+++|++.+|.++|.+++++++|.+++..- ..| .++++.|+|..
T Consensus 324 ~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f-~~~~~~~~l~~ 402 (488)
T KOG2197|consen 324 GMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHF-HLYVAPAILNK 402 (488)
T ss_pred cHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchH-HHHHHHhhhhc
Confidence 677777778899999999999999999999999999999999999999999999999999663 344 55699999999
Q ss_pred hhHHhhcCC-CHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 041508 471 YGPALVTTK-DAGDAVTLLQTLAGSTFDSSQLVLTACM 507 (854)
Q Consensus 471 ~re~LL~~~-D~~Eil~lLq~Lp~~~~D~~~LI~~A~~ 507 (854)
....|+... ++++++..+..+ ....|..-++..|..
T Consensus 403 ~~~~l~~~~~~~~e~l~~i~~~-~~~~d~~~~~~~A~~ 439 (488)
T KOG2197|consen 403 DPQTLMEQGKSFNEVLKHVNLL-SEKADVLWVLVRAEA 439 (488)
T ss_pred chHHHHhcCccchhHHhhcccc-cccchhhhHHHHHHH
Confidence 888887644 666666666544 334455555554433
No 18
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.76 E-value=4.8e-18 Score=186.51 Aligned_cols=222 Identities=19% Similarity=0.341 Sum_probs=174.6
Q ss_pred CCCchhHHHHHHHHhcCccCCCh-HHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhhhhhhhhcCCcCCCC
Q 041508 245 GLPMALRGELWQAFVGVRARRVD-KYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQIEKDLPRTFPG 323 (854)
Q Consensus 245 GIP~~LR~~VW~lLLGi~~~~~e-~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~~qIekDV~RTfp~ 323 (854)
|=|.++ |+.+||+...... ..+..++... ...+|++|+.|..-.
T Consensus 36 G~~~~~----W~~~L~V~~K~d~l~~wd~iydLp-------------------------------~Q~~lr~DC~~~~d~ 80 (669)
T KOG3636|consen 36 GNDKSD----WMRLLGVSMKPNPLDDWDQIYDLP-------------------------------NQCALRNDCRKLADG 80 (669)
T ss_pred CCCHHH----HHHHhcccCCCCchhhHHHHhCCc-------------------------------hhhHHHHHHHHHHhh
Confidence 557666 9999999765432 3333433221 135688887765433
Q ss_pred CCCCChh---hHHHHHHHHHHHHhhCCCCCccccch---HHHHHHhhcCChHHHHHHHHHhhHhhhcCCCCchhHHHHHH
Q 041508 324 HPALDND---GRNALRRLLTAYARHNPSVGYCQAMN---FFAALLLLLMPEENAFWALMGILDDYFDGYYSEEMIESQVD 397 (854)
Q Consensus 324 ~~~F~e~---g~~~LrrIL~aYa~~nP~VGY~QGMn---~Iaa~LLlvm~EedAFw~f~~Lm~~~l~~yfs~~~~~l~~~ 397 (854)
...-.++ ....|..++..|+... ++.|...++ .+-.+|++.+|..+.|.||.+|+++|+|.-..+....++
T Consensus 81 l~n~ee~~v~vv~dlES~iTfYCK~R-n~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh-- 157 (669)
T KOG3636|consen 81 LKNKEEDKVPVVSDLESFITFYCKKR-NMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQIFH-- 157 (669)
T ss_pred cCCchhhccchhHhhhhHhhhhhhcc-CCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCccch--
Confidence 3322222 2457889998888754 788888776 445566777899999999999999999877666665444
Q ss_pred HHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhHHhhc
Q 041508 398 QLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPALVT 477 (854)
Q Consensus 398 ~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~LFrvaLAIL~~~re~LL~ 477 (854)
.|+.||++|+|+|++||+...++|.+|+..||-+||+..++.+.+.-+||.||..+++|++|++++.||+..++.||+
T Consensus 158 --~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq 235 (669)
T KOG3636|consen 158 --LFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQ 235 (669)
T ss_pred --HHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhh
Confidence 588999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC--CHHHHHHHHHhccCCC--CCHHHHHHHHH
Q 041508 478 TK--DAGDAVTLLQTLAGST--FDSSQLVLTAC 506 (854)
Q Consensus 478 ~~--D~~Eil~lLq~Lp~~~--~D~~~LI~~A~ 506 (854)
++ +.++++++|.++|... -|+..++..|.
T Consensus 236 ~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAq 268 (669)
T KOG3636|consen 236 VKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQ 268 (669)
T ss_pred hccccHHHHHHHHHcCchhcccccchhHHHHHH
Confidence 76 6789999999987532 46667776663
No 19
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.71 E-value=3.7e-17 Score=189.49 Aligned_cols=245 Identities=25% Similarity=0.353 Sum_probs=204.4
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhcCccCCCh---HHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhhhh
Q 041508 235 KEELEVLVRGGLPMALRGELWQAFVGVRARRVD---KYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKG 311 (854)
Q Consensus 235 ~ekLk~Lir~GIP~~LR~~VW~lLLGi~~~~~e---~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~~ 311 (854)
..+|+.++.+|||+..|-.+|+.|+....+... ..|.++......+ ..+.++.
T Consensus 174 ~~~l~e~Ve~~~p~~frli~~qlLssatd~~q~~I~e~~sdl~~~s~~~------------------------Ek~~~~~ 229 (948)
T KOG4436|consen 174 LHKLKELVEGGIPMHFRLIRWQLLSSATDREQALIFEDYSDLAPCSSQQ------------------------EKELHIG 229 (948)
T ss_pred hhhhHHHHhcCCchHHHHHHHHHhcccccchhhHHHHHHHHHhhhcchh------------------------hhhHHHH
Confidence 357899999999999999999999988877743 4445544333211 1234567
Q ss_pred hhhhcCCcCCCCCCCCCh--h--------hHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcCChHHHHHHHHHhhHh
Q 041508 312 QIEKDLPRTFPGHPALDN--D--------GRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDD 381 (854)
Q Consensus 312 qIekDV~RTfp~~~~F~e--~--------g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~EedAFw~f~~Lm~~ 381 (854)
.|..|+.||.|.|.+|.+ . ++..|+++..+|+...-.+|||||-+++++++++.++++.+|.+++.+|..
T Consensus 230 ~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~~E~assv~~~lm~~ 309 (948)
T KOG4436|consen 230 IIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMPVEEASSVKVQLMIL 309 (948)
T ss_pred HHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 899999999999999952 2 489999999999999999999999999999999999999999999999999
Q ss_pred h-hcCCCCchhHHHHHHHHHHHHHHHhhcc-chhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchH
Q 041508 382 Y-FDGYYSEEMIESQVDQLVFEELVRERFP-KLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVM 459 (854)
Q Consensus 382 ~-l~~yfs~~~~~l~~~~~vLe~LLk~~dP-eL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~ 459 (854)
| ++..|.+.+..+-.++..++.......| .|+.|+...+++..+|.-.||++.|...||+...-++.|+|.++|..+
T Consensus 310 ~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egllk- 388 (948)
T KOG4436|consen 310 YRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGLLK- 388 (948)
T ss_pred hcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccccccccccHHH-
Confidence 8 6888999999888889999999999999 999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHhhHHhhcCCCHHHHHHHHHhccCCCC--CHHHHHHH
Q 041508 460 LFRTALALMELYGPALVTTKDAGDAVTLLQTLAGSTF--DSSQLVLT 504 (854)
Q Consensus 460 LFrvaLAIL~~~re~LL~~~D~~Eil~lLq~Lp~~~~--D~~~LI~~ 504 (854)
.|++.+|++....+.=+...|++....+++.--...+ +++.+...
T Consensus 389 ~fr~~ia~~~~~~d~~~~s~D~EG~~~~~qr~~s~~vggtp~k~~t~ 435 (948)
T KOG4436|consen 389 RFRDSIAYLHQLRDIELESLDMEGMLSYFQRNRSNTVGGTPDKLRTA 435 (948)
T ss_pred HHhhhHHHHHHHhhhhhhccCccccccchhhccccccCCCCchHHHH
Confidence 7899999994444444445688888777764333333 34444443
No 20
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=9.5e-11 Score=124.34 Aligned_cols=261 Identities=24% Similarity=0.342 Sum_probs=182.6
Q ss_pred hhhhhhcccccCCCHHHHHHHHhCCC---CchhHHHHHHHHhcCccCCC----hHHHHHHHHHhhhccCccccccCCCCC
Q 041508 221 VAIDATTLQSLFPWKEELEVLVRGGL---PMALRGELWQAFVGVRARRV----DKYYQDLLSAESNFGNNMEQHSSQSDN 293 (854)
Q Consensus 221 l~~~~~~le~~~~~~ekLk~Lir~GI---P~~LR~~VW~lLLGi~~~~~----e~~Y~~LL~k~~~~~~~~~q~~~~~~~ 293 (854)
...+-+..+-.+....+|+.+.+.|. .+.+|++|++.|+.-.+.+. ...|.+++-+-- .+++..-..
T Consensus 18 aiqdlgpkelsctelqelkqlarqgywaqshalrgkvyqrlirdipcrtvtpdasvysdivgkiv------gkhsssclp 91 (559)
T KOG2801|consen 18 AIQDLGPKELSCTELQELKQLARQGYWAQSHALRGKVYQRLIRDIPCRTVTPDASVYSDIVGKIV------GKHSSSCLP 91 (559)
T ss_pred HHHhcCccccchHhHHHHHHHHhcchHHhhhhhhhHHHHHHHhcCCccccCCchhHHHHHHHHHh------ccCCccccc
Confidence 33344444555555678999999997 67899999999998776543 467777765432 122111110
Q ss_pred CCCCCCCCCCCCchhhhhhhhhcCCcC-CCCCCCCChhhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcC-ChHHH
Q 041508 294 DSKSSTKDSVCLPEKWKGQIEKDLPRT-FPGHPALDNDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLM-PEENA 371 (854)
Q Consensus 294 ~~~~~~~~s~~~~e~~~~qIekDV~RT-fp~~~~F~e~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm-~EedA 371 (854)
. + ..+ .-| .|.+ ..+..|....+.||.+.+...|+|+||+.++.++++||.+. +|.++
T Consensus 92 l-----------p----efv----dntqvpsy-clnargegavrkilKOGanqfpdisfcpalpavvalllhysideaec 151 (559)
T KOG2801|consen 92 L-----------P----EFV----DNTQVPSY-CLNARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAEC 151 (559)
T ss_pred c-----------h----hhc----ccCcCchh-hhcCcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHH
Confidence 0 0 001 111 1111 23445667899999999999999999999999999999885 88999
Q ss_pred HHHHHHhhHhhhc--CCCCchhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHH
Q 041508 372 FWALMGILDDYFD--GYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWD 449 (854)
Q Consensus 372 Fw~f~~Lm~~~l~--~yfs~~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD 449 (854)
|.--+.|+.---+ .....+...+...+..|..|+.+.....++.+....-++....-.|-..+| .++|+-...|++|
T Consensus 152 fekacrilacndpgrrlidqsflafesscmtfgdlvnkycqaahklmvavsedvlqvyadwqrwlf-gelplcyfarvfd 230 (559)
T KOG2801|consen 152 FEKACRILACNDPGRRLIDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFD 230 (559)
T ss_pred HHHhheeeeecCcchhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhh
Confidence 9888877653322 233444445555566789999999988888887666666666778888777 6799999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHHhhHHh----hcCCC-HHHHHHHHHhccCCCCCHHHHHHHHHHhhh
Q 041508 450 VLLFEGNRVMLFRTALALMELYGPAL----VTTKD-AGDAVTLLQTLAGSTFDSSQLVLTACMGYQ 510 (854)
Q Consensus 450 ~ff~eG~~f~LFrvaLAIL~~~re~L----L~~~D-~~Eil~lLq~Lp~~~~D~~~LI~~A~~~~~ 510 (854)
+|+.+|.++ ||++++|||+.+...- |..++ ..+|-.+++.+ .++..++.|+..|+....
T Consensus 231 vflvegykv-lyrvalailkffhkvragqplesdsvkqdirtfvrdi-aktvspekllekafairl 294 (559)
T KOG2801|consen 231 VFLVEGYKV-LYRVALAILKFFHKVRAGQPLESDSVKQDIRTFVRDI-AKTVSPEKLLEKAFAIRL 294 (559)
T ss_pred heeecchHH-HHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHH-HhhCCHHHHHHHHHHHHH
Confidence 999999998 9999999999876432 22222 34566666665 356788889888865443
No 21
>PF14961 BROMI: Broad-minded protein
Probab=97.71 E-value=0.00023 Score=88.35 Aligned_cols=187 Identities=15% Similarity=0.236 Sum_probs=129.2
Q ss_pred HHHHHHHHHHhhCCCCCccccchHHHHHHhhcC-C-hHHHHHHHHHhhHhh------hcCC-----CCch-----hH-HH
Q 041508 334 ALRRLLTAYARHNPSVGYCQAMNFFAALLLLLM-P-EENAFWALMGILDDY------FDGY-----YSEE-----MI-ES 394 (854)
Q Consensus 334 ~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm-~-EedAFw~f~~Lm~~~------l~~y-----fs~~-----~~-~l 394 (854)
+..+||..|..+++.-+| .|...+++.+.++| . -+.+.-++..|.... .+.. ...+ +. -.
T Consensus 1085 s~l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~ 1163 (1296)
T PF14961_consen 1085 SSLHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVY 1163 (1296)
T ss_pred chhHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchh
Confidence 344555555555655555 58886666655555 3 444444444443321 1211 1111 11 11
Q ss_pred HHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhHH
Q 041508 395 QVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPA 474 (854)
Q Consensus 395 ~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~LFrvaLAIL~~~re~ 474 (854)
-.....++.+|+...|.+|.-|...|+++...|.+|+.-+|=+.++|..++...=+.+..|+.+.+| +|+|||+...+.
T Consensus 1164 ~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY-~~VailkHlq~~ 1242 (1296)
T PF14961_consen 1164 FCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVY-ICVAILKHLQPE 1242 (1296)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceee-hhHHHHHHhhHH
Confidence 2334678999999999999999999999999999999999999999999999888888999999555 999999999999
Q ss_pred hhcCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcchHHHHHHHH
Q 041508 475 LVTTKDAGDAVTLLQTLAGSTFDSSQLVLTACMGYQNHRPAVVAAVEE 522 (854)
Q Consensus 475 LL~~~D~~Eil~lLq~Lp~~~~D~~~LI~~A~~~~~~~r~~V~~~le~ 522 (854)
||+.....++..+|+.-+-+-|...+-+.--...-+++|+.|+.+++.
T Consensus 1243 ilq~~q~q~L~~flke~~l~gF~~~~~~~yM~~Le~~yR~~vL~~m~~ 1290 (1296)
T PF14961_consen 1243 ILQHTQTQDLQVFLKEEALRGFRVSDYLEYMENLEQRYRPRVLTDMRN 1290 (1296)
T ss_pred HHHhhhhchHHHHhhhccccceeHHhHHHHHHHHHHHhHhHHHHHHHH
Confidence 998777777888887655555655443332222334578888777553
No 22
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=97.69 E-value=2.8e-06 Score=95.92 Aligned_cols=217 Identities=22% Similarity=0.272 Sum_probs=137.7
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhcCccCCC------------hHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCC
Q 041508 237 ELEVLVRGGLPMALRGELWQAFVGVRARRV------------DKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVC 304 (854)
Q Consensus 237 kLk~Lir~GIP~~LR~~VW~lLLGi~~~~~------------e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~ 304 (854)
-|..-+++|+...+|+.+|+.+.+...... ...|+..+..-..
T Consensus 550 ~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~~------------------------- 604 (813)
T KOG1648|consen 550 VLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLFR------------------------- 604 (813)
T ss_pred HHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHHh-------------------------
Confidence 355667899999999999999998654221 1344433322110
Q ss_pred CchhhhhhhhhcCCcCCCCCCCCCh-hhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcC-ChHHHHHHHHHhhHhh
Q 041508 305 LPEKWKGQIEKDLPRTFPGHPALDN-DGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLM-PEENAFWALMGILDDY 382 (854)
Q Consensus 305 ~~e~~~~qIekDV~RTfp~~~~F~e-~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm-~EedAFw~f~~Lm~~~ 382 (854)
.-...|++|+.|+..+..+|.+ +..++ +++...|...|-.-||+|||.++.++++.-+ ++..+-.||.-+|-.-
T Consensus 605 ---~~~~~~~kd~e~~~~~~~~fs~~~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q 680 (813)
T KOG1648|consen 605 ---ANLHRIDKDVERCDRNLMFFSNKDNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQ 680 (813)
T ss_pred ---hheeeecchhhhCcchheeecCCcchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHh
Confidence 1246799999999999889964 55666 8999999999999999999999999998776 3333333444444322
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhc-----CCc
Q 041508 383 FDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFE-----GNR 457 (854)
Q Consensus 383 l~~yfs~~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~e-----G~~ 457 (854)
++.|.. .+++..++.-+ .+++..+|-. .-++. .....|+||+.-|.+.++.+-...+|.+++.. ...
T Consensus 681 -~~~~~q-~~~~~~~l~~~-r~~~v~~~l~-s~id~----~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 752 (813)
T KOG1648|consen 681 -RGKFPQ-RPGMSKCLLNL-RLIQVVDPLI-SDIDY----AQALSFRWFLLDFKRELSYECTYKVWEVIWAAQRLRITDD 752 (813)
T ss_pred -cccCCC-CCCcccccccc-cchhhhcchh-cchhh----hhhcceeeeccCcccccCCCCcceeeEeeccccccccCcc
Confidence 122211 11111111111 2455555522 22221 23345899999999999999999999988865 234
Q ss_pred hHHHHHHHHHHHHhhHHhhcCCCHHHHHHHHHhc
Q 041508 458 VMLFRTALALMELYGPALVTTKDAGDAVTLLQTL 491 (854)
Q Consensus 458 f~LFrvaLAIL~~~re~LL~~~D~~Eil~lLq~L 491 (854)
|.|| ++++.--.+.-.|-..-+..+++.+++..
T Consensus 753 ~~i~-~g~~~~~~~~~~~t~~~~~t~~i~~~~~~ 785 (813)
T KOG1648|consen 753 FAIF-FGLATTNYHDVLITNNFDYTDMIKFFNEM 785 (813)
T ss_pred hhhh-hhhHHHhhHHHHhhcccchHHHHHHHHHH
Confidence 5445 88887544444443333777788877644
No 23
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.30 E-value=11 Score=46.62 Aligned_cols=135 Identities=21% Similarity=0.262 Sum_probs=80.3
Q ss_pred ccHHHHHHHHHHHHH---HHHHHHHHH------------------HHhHHHHHHHHHHHHHHHHH------------HHH
Q 041508 596 PDLQEQVVWLKVELC---RLLEEKRSA------------------LLRAEELETALMEMVKQDNR------------RQL 642 (854)
Q Consensus 596 ~~l~eq~~~lk~El~---~ll~e~r~~------------------~lraeele~a~~e~~~~d~r------------~~l 642 (854)
..|+..+..|+.||. +.-+|.|+. ....|+|+..+.+++.+... ++.
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777653 334455554 13447788877777743211 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHH
Q 041508 643 SARVEQLEQEVSELRRILADKQ----------------------EQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRY 700 (854)
Q Consensus 643 ~~~~~~le~e~~~~~~~~~~~~----------------------~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~ 700 (854)
..+...||+++.+.|+.-...+ .++..|=..+=+++.|.|..||.-+.+|++..+-|.
T Consensus 501 ~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 501 RRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355567777776665532211 122233345777889999999999999999854443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 041508 701 AAQVLQEKYEEAIASLAEMEKRVVMAESML 730 (854)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (854)
-..--+.--|..|.+|+.|.-+..+-|.=|
T Consensus 581 ~~~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 581 YEKESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 211123346777888888877766554433
No 24
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.58 E-value=17 Score=39.52 Aligned_cols=83 Identities=24% Similarity=0.296 Sum_probs=53.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLM 675 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~ 675 (854)
..|++++..+.-+..+.-.+.+...-+|..|+..+. +.+..+..|..+...++++..+|+....+.++....|-+.+-
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k--~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~ 85 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLK--QAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888888888774 334457888888888888888888776666555555555554
Q ss_pred HHHHH
Q 041508 676 RVEQE 680 (854)
Q Consensus 676 r~~q~ 680 (854)
..+.+
T Consensus 86 e~~~~ 90 (246)
T PF00769_consen 86 EAEAE 90 (246)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 25
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.09 E-value=23 Score=39.76 Aligned_cols=119 Identities=25% Similarity=0.349 Sum_probs=67.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALME-MVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQV 673 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e-~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~ 673 (854)
+..|++++..|+.|.++|-.+.. ..|+-+..|+. .|+| =+..++++..|..|++.-..-....||+=+..+-.
T Consensus 169 lk~LEeEN~~LR~Ea~~L~~et~----~~EekEqqLv~dcv~Q--L~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 169 LKSLEEENEQLRSEASQLKTETD----TYEEKEQQLVLDCVKQ--LSEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHh----hccHHHHHHHHHHHHH--hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888898888888888875554 33333444432 2222 23334566777777777666666666666666666
Q ss_pred HHHHHHHhh-hh---HHHH-h-hhhhhHHHhHHH--HHHHHHHHHHHHHHHHHHH
Q 041508 674 LMRVEQEQK-VT---EDAR-R-FAEQDAAAQRYA--AQVLQEKYEEAIASLAEME 720 (854)
Q Consensus 674 ~~r~~q~~~-~~---~~~~-~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 720 (854)
++-+++.-| ++ |+.+ . .+.+|+ .+.-+ .+-||+||.+.++.|++-.
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~ske~-Q~~L~aEL~elqdkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQASKES-QRQLQAELQELQDKYAECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655554432 11 1111 1 111221 22223 4568999999998887643
No 26
>PTZ00121 MAEBL; Provisional
Probab=86.70 E-value=41 Score=44.51 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=14.9
Q ss_pred HhhhhHHHHhhhhhhHHHhHHHHHH
Q 041508 680 EQKVTEDARRFAEQDAAAQRYAAQV 704 (854)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (854)
|-.+++.||+.|+|-+..+|-|.++
T Consensus 1259 ear~a~~A~r~aa~k~Ee~RrAee~ 1283 (2084)
T PTZ00121 1259 EARMAHFARRQAAIKAEEARKADEL 1283 (2084)
T ss_pred HHHHHHHHHHhHhhhhHHHHHHHHH
Confidence 3345666666666666666666554
No 27
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=86.19 E-value=53 Score=35.37 Aligned_cols=135 Identities=25% Similarity=0.301 Sum_probs=94.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSAL-------LRAEELETALMEMV---KQDNRRQLSARVEQLEQEVSELRRILADKQE 665 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~-------lraeele~a~~e~~---~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~ 665 (854)
.+.+.++...+..+.+++...+..- .+++.++......+ ..+-.+++-.++.+||..+..+++.+..-.+
T Consensus 34 rd~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~ 113 (225)
T COG1842 34 RDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEE 113 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554443 33344444444444 2345677888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHH---------HHHHHHHHHHhhhHHHHHHHHHHhh
Q 041508 666 QESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYE---------EAIASLAEMEKRVVMAESMLEATLQ 735 (854)
Q Consensus 666 ~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (854)
+...|=..|+++++. |++ ..+..++...|+++.--|++-. .||.+|..||.|+-..|...++--+
T Consensus 114 ~~~~l~~~~~~Le~K--i~e---~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~e 187 (225)
T COG1842 114 QVEKLKKQLAALEQK--IAE---LRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAE 187 (225)
T ss_pred HHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 888888888888764 433 3467788888888888887764 6899999999999888877766543
No 28
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=82.78 E-value=78 Score=39.16 Aligned_cols=45 Identities=24% Similarity=0.255 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041508 637 DNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQ 681 (854)
Q Consensus 637 d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~ 681 (854)
+.|-+..+.+-.|......|++.|.++++.-...-..|--.++.+
T Consensus 507 ~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~l 551 (739)
T PF07111_consen 507 RAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSL 551 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344444444444444444444444444444443333333333333
No 29
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=82.26 E-value=82 Score=37.91 Aligned_cols=134 Identities=24% Similarity=0.271 Sum_probs=89.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQD------NRRQLSARVEQLEQEVSELRRILADKQEQES- 668 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d------~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~- 668 (854)
.....++...+.+|+..-++...-....+-|...+. .++.+ +-...+..|..|+.++..++.-|...+..+.
T Consensus 284 ~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe-~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~ 362 (522)
T PF05701_consen 284 ASAKKELEEAKKELEKAKEEASSLRASVESLRSELE-KEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEK 362 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 445566666677777777776666655555555552 33222 2245566889999999888887755544444
Q ss_pred ---HHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 041508 669 ---AMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESMLEATL 734 (854)
Q Consensus 669 ---~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (854)
.|-..-.-++|-..-+|.|+. .+..-+.-+..+.+-.|.+-+.+..||.|...|--|+||..
T Consensus 363 ~k~~~~~l~~~Lqql~~Eae~Ak~----ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaK 427 (522)
T PF05701_consen 363 AKEAMSELPKALQQLSSEAEEAKK----EAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAK 427 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333344554555555553 44455667778888999999999999999999999999864
No 30
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.79 E-value=48 Score=41.32 Aligned_cols=66 Identities=32% Similarity=0.421 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh---hhhhHHHhHHHHHHHHHHHHHHHHHHH
Q 041508 642 LSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRF---AEQDAAAQRYAAQVLQEKYEEAIASLA 717 (854)
Q Consensus 642 l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (854)
+-.++.+||.|+..|+.-|..|+||-..|-+.+ .+.|.+ -+.|+..=--|..+||+|-.-.-.+|+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~----------~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL----------QELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLS 611 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555889999999999999999999876665555 333333 457888888999999999876666554
No 31
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=80.67 E-value=1.7e+02 Score=37.04 Aligned_cols=92 Identities=21% Similarity=0.286 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHH
Q 041508 629 ALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEK 708 (854)
Q Consensus 629 a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (854)
.+.+-|+.++...+.++..++++.++.-|+.|++.++++.-.-..- =-.++.|+.-+.+|-.+++++.-- +..
T Consensus 757 ~f~e~vk~~rqs~~~e~~~~~ea~leaer~rl~erk~~R~eerk~~----~~re~EEEr~Rr~EEe~~ae~~ee---~~e 829 (988)
T KOG2072|consen 757 KFKEHVKGERQSEYEEKLKQFEARLEAERNRLAERKRARIEERKQA----YYREIEEERARREEEEANAERQEE---AAE 829 (988)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 3445566777788888999999998877778877766543221110 011334444444555555444221 111
Q ss_pred HHHHHHHHHHHHhhhHHHH
Q 041508 709 YEEAIASLAEMEKRVVMAE 727 (854)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~ 727 (854)
--++.....+||+|+-|-|
T Consensus 830 ~akr~~~eRe~e~~~ak~e 848 (988)
T KOG2072|consen 830 RAKRTEEEREIENRVAKKE 848 (988)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 1123344566666666655
No 32
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.49 E-value=78 Score=37.12 Aligned_cols=84 Identities=25% Similarity=0.262 Sum_probs=55.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQ-L----SARVEQLEQEVSELRRILADKQEQESA 669 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~-l----~~~~~~le~e~~~~~~~~~~~~~~~~~ 669 (854)
++.+.+++..|+..+..+-..+.......++|.+.+-+...+..+.. + .--+.+|+++++..++-+..-+-++.+
T Consensus 156 ~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~ 235 (420)
T COG4942 156 NPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESR 235 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 38899999999999888888877777888889888877765533211 1 113445666666666666665666665
Q ss_pred HHHHHHHHH
Q 041508 670 MIQVLMRVE 678 (854)
Q Consensus 670 ~~~~~~r~~ 678 (854)
.=+++-++|
T Consensus 236 L~~~Ias~e 244 (420)
T COG4942 236 LKNEIASAE 244 (420)
T ss_pred HHHHHHHHH
Confidence 555554444
No 33
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=79.37 E-value=1.4e+02 Score=40.16 Aligned_cols=30 Identities=30% Similarity=0.269 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 041508 706 QEKYEEAIASLAEMEKRVVMAESMLEATLQ 735 (854)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (854)
+.++++...-+.+.+.|+-.++.-+++++.
T Consensus 360 ~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~ 389 (1353)
T TIGR02680 360 ESRLEEERRRLDEEAGRLDDAERELRAARE 389 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777766655
No 34
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.98 E-value=28 Score=33.98 Aligned_cols=73 Identities=26% Similarity=0.406 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVL 674 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~ 674 (854)
..|+.++..+..|+..+-.+..+....-+++...+..+.... ..+....+++..|++-+.+.+.++.++|+.|
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~------e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN------EELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666666666665555555555555555544332 1223333344444444445556666666554
No 35
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=78.75 E-value=36 Score=37.48 Aligned_cols=85 Identities=24% Similarity=0.361 Sum_probs=54.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMV--KQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQV 673 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~--~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~ 673 (854)
..+++++..++..+..|-.++.+...+.+.|+..+.++- ....+..+.+.+..||.|+++++.-+..+...+...|.+
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~ 291 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDV 291 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555566666666543 334566777788888888888888887777777777766
Q ss_pred HHHHHHH
Q 041508 674 LMRVEQE 680 (854)
Q Consensus 674 ~~r~~q~ 680 (854)
=|.++.|
T Consensus 292 K~~Ld~E 298 (312)
T PF00038_consen 292 KLALDAE 298 (312)
T ss_dssp HHHHHHH
T ss_pred HHhHHHH
Confidence 6666655
No 36
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.68 E-value=28 Score=40.42 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 041508 659 ILADKQEQESAMIQVLMRVEQEQKVTE 685 (854)
Q Consensus 659 ~~~~~~~~~~~~~~~~~r~~q~~~~~~ 685 (854)
-|.+.|+-..+|++.|+|++++.+-|+
T Consensus 347 ql~~eq~l~~rm~d~Lrrfq~ekeatq 373 (502)
T KOG0982|consen 347 QLICEQKLRVRMNDILRRFQEEKEATQ 373 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344556667788999999888866553
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=78.08 E-value=1.4e+02 Score=38.70 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 041508 701 AAQVLQEKYEEAIASLAEMEKRVVMAESML 730 (854)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (854)
....++.++..+.+.+..++.+.-.++.+.
T Consensus 470 ~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~ 499 (1164)
T TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELAEAEAQA 499 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544444443
No 38
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=76.79 E-value=1.5e+02 Score=38.35 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhhhH
Q 041508 709 YEEAIASLAEMEKRVV 724 (854)
Q Consensus 709 ~~~~~~~~~~~~~~~~ 724 (854)
.+.....+.+++++.-
T Consensus 394 l~~l~~~~~~~~~~~~ 409 (1164)
T TIGR02169 394 LEKLKREINELKRELD 409 (1164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444444433
No 39
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.62 E-value=1.4e+02 Score=35.85 Aligned_cols=112 Identities=26% Similarity=0.248 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 041508 606 KVELCRLLEEKRSALLRA-EELETALMEMVKQDNRRQLSARVEQLEQ-EVSELRRILADKQEQESAMIQVLMRVEQEQ-- 681 (854)
Q Consensus 606 k~El~~ll~e~r~~~lra-eele~a~~e~~~~d~r~~l~~~~~~le~-e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~-- 681 (854)
-.++.++-+||.+--|+. --++.+..+....|..-++.|++-.|-+ ++..|+..++-- ++|.-+...+||+.-.|
T Consensus 80 t~~~~ql~kEK~~~~m~n~~~~e~~~k~~~~kdik~E~ea~~k~l~q~~~d~l~~~~~fl-e~Ek~d~e~~m~~~~~q~E 158 (613)
T KOG0992|consen 80 TQGLQQLQKEKTRVDMTNEILLESVRKAQTQKDIKCEEEAKIKNLQQIEIDKLKNLLSFL-EQEKVDREGLMRQQTQQIE 158 (613)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHH
Confidence 345566666663322333 3355566666677888899999988887 677777777766 89999999999986544
Q ss_pred -------------hhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 041508 682 -------------KVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVM 725 (854)
Q Consensus 682 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (854)
-++++-||-+|+|+ |+.|.--++..+.+|..|++--|
T Consensus 159 sls~~le~~~~~~~~~~kl~ie~e~~~-------h~~qq~e~~l~t~~a~~e~~nrh 208 (613)
T KOG0992|consen 159 SLSEELERLRPIESVAEKLRIELEQLR-------HSTQQEENLLTTTLAAVEEENRH 208 (613)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHhccchHHHHHHHHH
Confidence 36788899999985 55554445566778887776543
No 40
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=75.55 E-value=1e+02 Score=37.94 Aligned_cols=95 Identities=32% Similarity=0.443 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNR--------------RQLSARVEQLEQEVSELRRILA 661 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r--------------~~l~~~~~~le~e~~~~~~~~~ 661 (854)
..+++.+..+..++|.|-+++...+.+-.+|+..+.++..+-.- .+|++.++.|..|+..|..-+.
T Consensus 25 a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlq 104 (617)
T PF15070_consen 25 AQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQ 104 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888899999999999999999999999999885533210 3566666666666655554333
Q ss_pred HHHHHHHHHHHHHHHH--HHHhhhhH---HHHhhhhhh
Q 041508 662 DKQEQESAMIQVLMRV--EQEQKVTE---DARRFAEQD 694 (854)
Q Consensus 662 ~~~~~~~~~~~~~~r~--~q~~~~~~---~~~~~~~~~ 694 (854)
.. -.+ .+.|.++ +||.++.| .+++..|+.
T Consensus 105 aq-v~~---ne~Ls~L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 105 AQ-VEN---NEQLSRLNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred HH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 112 2333333 66666665 455555544
No 41
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=75.20 E-value=67 Score=34.49 Aligned_cols=76 Identities=24% Similarity=0.273 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 041508 643 SARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKR 722 (854)
Q Consensus 643 ~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (854)
..|++..++...+..+.+..-+.+....=..|-.+|+ ....-+.++.-...||+++..-|..+|.+
T Consensus 63 ~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~--------------~l~ea~~~~ee~e~k~~E~~rkl~~~E~~ 128 (237)
T PF00261_consen 63 TEKLEEAEKRADESERARKVLENREQSDEERIEELEQ--------------QLKEAKRRAEEAERKYEEVERKLKVLEQE 128 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHH--------------HHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444444444444444433333 33344455556666777776666666666
Q ss_pred hHHHHHHHHH
Q 041508 723 VVMAESMLEA 732 (854)
Q Consensus 723 ~~~~~~~~~~ 732 (854)
.--||.-+++
T Consensus 129 Le~aEeR~e~ 138 (237)
T PF00261_consen 129 LERAEERAEA 138 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 6665555443
No 42
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=75.12 E-value=1.7e+02 Score=35.28 Aligned_cols=131 Identities=27% Similarity=0.272 Sum_probs=93.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHH-----HHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNR-RQLSA----RVEQLEQEVSE-----LRRILADKQE 665 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r-~~l~~----~~~~le~e~~~-----~~~~~~~~~~ 665 (854)
..+++|+.....+=.+.+.|..++.-..++|...|........+ .+-+. ++.++++.+.+ .++=|.--++
T Consensus 44 ~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~ 123 (522)
T PF05701_consen 44 AKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESARE 123 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHH
Confidence 66777777777778888888888888888888888655432222 12221 56777776666 4444555688
Q ss_pred HHHHHHHHH-------HHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 041508 666 QESAMIQVL-------MRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMA 726 (854)
Q Consensus 666 ~~~~~~~~~-------~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (854)
|++..+..| -+|++|...+-|++-.|...|..---++++-.++-|....=|..|-.-.+.+
T Consensus 124 q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 124 QYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888554 5666777788899999999999888888888888888777766665544443
No 43
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=74.79 E-value=1.9e+02 Score=38.32 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=19.9
Q ss_pred HHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 041508 687 ARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAES 728 (854)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (854)
.+...+.+-...+.-...|...+.++-..+.+++.-..-++.
T Consensus 871 ~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 912 (1163)
T COG1196 871 EKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRE 912 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555555555555543333333
No 44
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=73.10 E-value=28 Score=35.60 Aligned_cols=37 Identities=32% Similarity=0.528 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 640 RQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMR 676 (854)
Q Consensus 640 ~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r 676 (854)
.+|+.+++.|+.|+..|.+-++--+|-+.++++.|=|
T Consensus 114 ~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 114 ESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677799999999999999999999999999999933
No 45
>PRK12704 phosphodiesterase; Provisional
Probab=73.03 E-value=1.9e+02 Score=34.90 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--hhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 041508 648 QLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDAR--RFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVM 725 (854)
Q Consensus 648 ~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (854)
..++++.++++-+.+..++....|+...-|-+| +|| ...+-...+.+-++..+.+..++|-. =|.-+-|-++
T Consensus 121 ~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~-----ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~a~~i~ 194 (520)
T PRK12704 121 QKQQELEKKEEELEELIEEQLQELERISGLTAE-----EAKEILLEKVEEEARHEAAVLIKEIEEEAKE-EADKKAKEIL 194 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 333344444444444444444444444333332 233 23444445556677777776666654 4555555555
Q ss_pred HHHH
Q 041508 726 AESM 729 (854)
Q Consensus 726 ~~~~ 729 (854)
+..|
T Consensus 195 ~~a~ 198 (520)
T PRK12704 195 AQAI 198 (520)
T ss_pred HHHH
Confidence 5443
No 46
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=72.46 E-value=2e+02 Score=34.70 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=20.6
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 041508 691 AEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESM 729 (854)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (854)
..-...+.+-++..+.+-.++|.. =|..+-|-+++..|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~a~~i~~~ai 192 (514)
T TIGR03319 155 EEVEEEARHEAAKLIKEIEEEAKE-EADKKAKEILATAI 192 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 333444555666777766666554 45555555555443
No 47
>PTZ00121 MAEBL; Provisional
Probab=72.30 E-value=2.1e+02 Score=38.47 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=8.7
Q ss_pred HHHHhCCCCchhHHHHHH
Q 041508 239 EVLVRGGLPMALRGELWQ 256 (854)
Q Consensus 239 k~Lir~GIP~~LR~~VW~ 256 (854)
..+-|..||..+=-+-|.
T Consensus 606 ~~m~rfdi~~nhi~i~wk 623 (2084)
T PTZ00121 606 KFMERFDIPKNHIFIEWK 623 (2084)
T ss_pred HHHHhcCCcccceEEEec
Confidence 334455555554444444
No 48
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=71.90 E-value=1.4e+02 Score=31.56 Aligned_cols=55 Identities=33% Similarity=0.514 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 608 ELCRLLEEKRSALL-RAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQ 664 (854)
Q Consensus 608 El~~ll~e~r~~~l-raeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~ 664 (854)
++-+.|++.-..+- +.+..+..+.+ +.++| +.|+.-+..++.||.+|++-|..-+
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~e-i~~eN-~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAE-ISQEN-KRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333332 33334444443 44444 4577788899999999998887633
No 49
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=71.77 E-value=78 Score=41.35 Aligned_cols=130 Identities=26% Similarity=0.293 Sum_probs=63.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRI-LADKQEQESAMIQVL 674 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~-~~~~~~~~~~~~~~~ 674 (854)
..|++.+..++.++.++.+.+|....+..+++.+ ..+.+-.++|+..-.+++++.+|-++. |.++ -+.|
T Consensus 633 ~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~---~~e~~~e~~lk~~q~~~eq~~~E~~~~~L~~~-------e~~~ 702 (1317)
T KOG0612|consen 633 SSLEETLKAGKKELLKVEELKRENQERISDSEKE---ALEIKLERKLKMLQNELEQENAEHHRLRLQDK-------EAQM 702 (1317)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHH
Confidence 4455555555556666555555555555555554 222233444555555555555554444 3333 2223
Q ss_pred HHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhh
Q 041508 675 MRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRV-------VMAESMLEATLQ 735 (854)
Q Consensus 675 ~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 735 (854)
-.+++...=-.+||..||.++-.----.+.|+--|-.+-.++-..+.+. .=-++|||+-.+
T Consensus 703 ~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~ 770 (1317)
T KOG0612|consen 703 KEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEIS 770 (1317)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333468888887765544444555555544443333333222 223566665543
No 50
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=71.50 E-value=99 Score=29.74 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQE 665 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~ 665 (854)
..++.++..|..+|...=...-.-...-++|+.++.....+ +..+.-++..|+++|+++++.+.+++-
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q--~~s~~qr~~eLqaki~ea~~~le~eK~ 79 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQ--NASRNQRIAELQAKIDEARRNLEDEKQ 79 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555454444333333334446688887655555 566667888899999998888888543
No 51
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=70.23 E-value=1e+02 Score=30.21 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041508 636 QDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQ 681 (854)
Q Consensus 636 ~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~ 681 (854)
.+...-|..+++.|+..+..+.+.+..++++-....++|.++.+++
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778889999999999999999999999999999999888765
No 52
>PRK04863 mukB cell division protein MukB; Provisional
Probab=69.57 E-value=2.6e+02 Score=38.07 Aligned_cols=93 Identities=25% Similarity=0.298 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhh----hhHHHhHHHHHHHHHHHHHHHH
Q 041508 639 RRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAE----QDAAAQRYAAQVLQEKYEEAIA 714 (854)
Q Consensus 639 r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 714 (854)
...+.++++.+++++..++.-+++.+......=+.+...++...--+.|+-.-- -|.-.+. -.+-++++-++...
T Consensus 378 leeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~-~LenF~aklee~e~ 456 (1486)
T PRK04863 378 QEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAED-WLEEFQAKEQEATE 456 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 455566667777777777666665554444444444555555544455554331 0111121 12334566677777
Q ss_pred HHHHHHhhhHHHHHHHHH
Q 041508 715 SLAEMEKRVVMAESMLEA 732 (854)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~ 732 (854)
.|..+|.+..+++.-++.
T Consensus 457 qL~elE~kL~~lea~leq 474 (1486)
T PRK04863 457 ELLSLEQKLSVAQAAHSQ 474 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788888888877776654
No 53
>PRK09039 hypothetical protein; Validated
Probab=69.26 E-value=2.1e+02 Score=32.63 Aligned_cols=111 Identities=21% Similarity=0.213 Sum_probs=51.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLM 675 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~ 675 (854)
.+|++++..++.++.- +..+-+.|+..+.. +.+...+++++..+|++++++.+...++.+-+=.+.=+.+-
T Consensus 77 ~~l~~~l~~l~~~l~~-------a~~~r~~Le~~~~~--~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~ 147 (343)
T PRK09039 77 QDLQDSVANLRASLSA-------AEAERSRLQALLAE--LAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIA 147 (343)
T ss_pred hhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh--hhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5566665555544442 22222344444432 12223456666777777777766666666555544444444
Q ss_pred HHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHH
Q 041508 676 RVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIAS 715 (854)
Q Consensus 676 r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (854)
.++...--.+.+=..+|+--+.++=-..-|+.+-+.|+|.
T Consensus 148 aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 148 ALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444322222332233322222222333445555555544
No 54
>PRK11637 AmiB activator; Provisional
Probab=68.34 E-value=2.4e+02 Score=32.88 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 639 RRQLSARVEQLEQEVSELRRILADKQE 665 (854)
Q Consensus 639 r~~l~~~~~~le~e~~~~~~~~~~~~~ 665 (854)
+.+|.++...|+.+.++++..+.+.+.
T Consensus 179 ~~~L~~~k~~le~~~~~l~~~~~e~~~ 205 (428)
T PRK11637 179 REELAAQKAELEEKQSQQKTLLYEQQA 205 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544443
No 55
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=68.18 E-value=1.6e+02 Score=30.89 Aligned_cols=97 Identities=22% Similarity=0.279 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHH--------
Q 041508 637 DNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEK-------- 708 (854)
Q Consensus 637 d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 708 (854)
|..+..-.+...++..+..+++.+..-..+...+-..+-+++-...=. + .+++...-|+.+.-.|.+
T Consensus 84 dLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~---k--~k~~~l~ar~~~a~a~~~~~~~~~~~ 158 (221)
T PF04012_consen 84 DLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEEL---K--SKREELKARENAAKAQKKVNEALASF 158 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 445555556666677777777776666666666555555444332211 1 122222223333333333
Q ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHhhhcc
Q 041508 709 -YEEAIASLAEMEKRVVMAESMLEATLQYQS 738 (854)
Q Consensus 709 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (854)
...|+.+|..||.|+-..|...+|.-....
T Consensus 159 ~~~~a~~~~er~e~ki~~~ea~a~a~~el~~ 189 (221)
T PF04012_consen 159 SVSSAMDSFERMEEKIEEMEARAEASAELAD 189 (221)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567888999999999999999999877763
No 56
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=67.95 E-value=1.7e+02 Score=31.05 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=26.7
Q ss_pred hHHHhHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 041508 694 DAAAQRYAAQVLQE-KYEEAIASLAEMEKRVVMAESMLEAT 733 (854)
Q Consensus 694 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (854)
-|.+|.-....+.. .-..|++.|..||.|+---|..-+|.
T Consensus 145 ~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~ 185 (219)
T TIGR02977 145 AASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESY 185 (219)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555444444432 45689999999999977777666653
No 57
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=67.79 E-value=67 Score=35.54 Aligned_cols=79 Identities=27% Similarity=0.318 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQ---EVSELRRILADKQEQESAMIQ 672 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~---e~~~~~~~~~~~~~~~~~~~~ 672 (854)
...+-.+.||+. .|+|+..+.-..+.-+ .+++.++..++.|.++...||. ++.+..+-+++-+++.++|-.
T Consensus 162 esa~vkV~WLR~----~L~Ei~Ea~e~~~~~~--~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~ 235 (269)
T PF05278_consen 162 ESAKVKVDWLRS----KLEEILEAKEIYDQHE--TREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKG 235 (269)
T ss_pred HHcCcchHHHHH----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456788885 3444443332223222 2334455555556655555544 555555556666666666666
Q ss_pred HHHHHHHH
Q 041508 673 VLMRVEQE 680 (854)
Q Consensus 673 ~~~r~~q~ 680 (854)
.|-+++.+
T Consensus 236 rl~~l~~~ 243 (269)
T PF05278_consen 236 RLGELEME 243 (269)
T ss_pred HHHHHHHH
Confidence 66665543
No 58
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=66.98 E-value=1.2e+02 Score=34.22 Aligned_cols=101 Identities=22% Similarity=0.363 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRS-ALLRAEELETALMEMVKQDNR-RQLSARVEQLEQEVSELRRILADKQEQESAMIQV 673 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~-~~lraeele~a~~e~~~~d~r-~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~ 673 (854)
+.+.+....|+.|+.+|-.-... .....++|+..-.++...+.. ....+++++|++++.+++..+.+..++-...+
T Consensus 180 ~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~-- 257 (325)
T PF08317_consen 180 PKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELL-- 257 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 55555555555555544443332 224556666665555544322 23444566666676666666665555554444
Q ss_pred HHHHHHHhhhhHHHHhhhhhhHHHhH
Q 041508 674 LMRVEQEQKVTEDARRFAEQDAAAQR 699 (854)
Q Consensus 674 ~~r~~q~~~~~~~~~~~~~~~~~~~~ 699 (854)
..+.+-+++-+.-|.+...|...-+
T Consensus 258 -~eI~e~~~~~~~~r~~t~~Ev~~Lk 282 (325)
T PF08317_consen 258 -AEIAEAEKIREECRGWTRSEVKRLK 282 (325)
T ss_pred -HHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3445566677777777666554433
No 59
>PRK00106 hypothetical protein; Provisional
Probab=66.87 E-value=3e+02 Score=33.49 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=19.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 041508 696 AAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESM 729 (854)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (854)
.+.+-++..+.+..++|.. =|+-+-|-+++..|
T Consensus 181 ~~~~~~~~~i~~~e~~a~~-~a~~~a~~ii~~ai 213 (535)
T PRK00106 181 KLTHEIATRIREAEREVKD-RSDKMAKDLLAQAM 213 (535)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3455566777777766655 45555565655544
No 60
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=66.18 E-value=2.2e+02 Score=31.77 Aligned_cols=119 Identities=25% Similarity=0.363 Sum_probs=76.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLM 675 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~ 675 (854)
-+++.++.++..|++.+.-+|..+-+-. ---|..|.+.|..=-+.|+-+|..|.+=.++.++-+
T Consensus 57 t~iQaeI~q~nlEielLkleKeTADltH---------------~~~L~~K~~~Lq~m~shLe~VLk~K~~Lr~RLqkP~- 120 (277)
T PF15003_consen 57 TNIQAEIDQLNLEIELLKLEKETADLTH---------------PDYLAEKCEALQSMNSHLEAVLKEKDRLRQRLQKPY- 120 (277)
T ss_pred HHHHHHHHhhhHHHHHHHhhcchHhhhC---------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh-
Confidence 4456666666666666665555543211 123444777777777888888888887777766655
Q ss_pred HHHHHhhhhHHHHhhhhhhHHHhHHHHHHHH------HHHHHHHH-----------------HHHHHHhhhHHHHHHHHH
Q 041508 676 RVEQEQKVTEDARRFAEQDAAAQRYAAQVLQ------EKYEEAIA-----------------SLAEMEKRVVMAESMLEA 732 (854)
Q Consensus 676 r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 732 (854)
....+ -=+|.-|||++++|. ++-++.+. +|++|.-.+.=-|...|+
T Consensus 121 ---~qe~L--------PVEA~yHr~vVeLL~laa~fi~~Le~~LetIrwip~~~~~~~~m~~aL~ki~~lvae~E~l~e~ 189 (277)
T PF15003_consen 121 ---CQENL--------PVEAQYHRYVVELLELAASFIEKLEEHLETIRWIPNFDENPSNMDKALAKIDALVAECEELAEQ 189 (277)
T ss_pred ---hhcCc--------cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 224778999999987 34444333 567777766667888899
Q ss_pred Hhhhccccc
Q 041508 733 TLQYQSGQI 741 (854)
Q Consensus 733 ~~~~~~~~~ 741 (854)
.+++..-|.
T Consensus 190 ilkwRe~~k 198 (277)
T PF15003_consen 190 ILKWREQQK 198 (277)
T ss_pred HHHHHHHHH
Confidence 888876553
No 61
>PHA02562 46 endonuclease subunit; Provisional
Probab=64.88 E-value=2.8e+02 Score=32.99 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q 041508 637 DNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRF 690 (854)
Q Consensus 637 d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~ 690 (854)
+.+..|++++++|+.++.++..-|.+-.++-..+-...-.++.+.+..+..+..
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~ 411 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDL 411 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888877776655555555554444444444444444444444433
No 62
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=63.37 E-value=4.7e+02 Score=34.73 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 640 RQLSARVEQLEQEVSELRRILADKQEQ 666 (854)
Q Consensus 640 ~~l~~~~~~le~e~~~~~~~~~~~~~~ 666 (854)
.+++.++..++.++..++.-+....++
T Consensus 393 ~~~~~~l~~l~~~i~~l~~~~~~~~~~ 419 (1163)
T COG1196 393 AEIRNELEELKREIESLEERLERLSER 419 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555444444333333
No 63
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=62.76 E-value=1.9e+02 Score=31.66 Aligned_cols=102 Identities=26% Similarity=0.292 Sum_probs=58.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNR-----RQLSARVEQLEQEVSELRRILADKQEQESAM 670 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r-----~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~ 670 (854)
..|+-|+.....-+..|-.....+....++|...+-|..|+.+- .=|.||+.+|-+...+.-.++ +.+
T Consensus 26 lTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li-------~~l 98 (277)
T PF15030_consen 26 LTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLI-------THL 98 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 33444443333333333334445555667788888777766544 235678888877777744443 456
Q ss_pred HHHHHHHHHH-hhhhHHHHhhhhhhHHHhHHHHHHH
Q 041508 671 IQVLMRVEQE-QKVTEDARRFAEQDAAAQRYAAQVL 705 (854)
Q Consensus 671 ~~~~~r~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (854)
||.|-|-.-. ..++|-|+..-+ |.|-.-|||..|
T Consensus 99 lqel~RHg~~~~lLse~a~~mv~-DvALaEYaAtFL 133 (277)
T PF15030_consen 99 LQELHRHGPANHLLSELAQSMVN-DVALAEYAATFL 133 (277)
T ss_pred HHHHHHhcchhHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 7777665432 345666665544 555556777654
No 64
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=61.82 E-value=1.3e+02 Score=29.37 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhh
Q 041508 650 EQEVSELRRILADKQ---EQESAMIQVLMRVEQEQKV 683 (854)
Q Consensus 650 e~e~~~~~~~~~~~~---~~~~~~~~~~~r~~q~~~~ 683 (854)
+.+...|+-.+++|+ |+...-.+-|++||+||+.
T Consensus 79 ~~~~q~lq~~I~Ek~~eLERl~~E~~sL~kve~eQ~~ 115 (120)
T PF14931_consen 79 EAQQQQLQALIAEKKMELERLRSEYESLQKVEQEQNE 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444 4567778999999999975
No 65
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=61.11 E-value=2.5e+02 Score=35.60 Aligned_cols=116 Identities=27% Similarity=0.255 Sum_probs=58.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHH---HHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQ---EVSELR-RILADK---QEQES 668 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~---e~~~~~-~~~~~~---~~~~~ 668 (854)
+.|...+..++.+...+--+.-.+.+++|.+...+.|.-|+ |.++-+.|.++.+ .|.++. .++..+ |||--
T Consensus 319 kylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKk--rd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQid 396 (1265)
T KOG0976|consen 319 KYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKK--RDMALMDVRSIQEKKENVEEELQSLLELQAERQEQID 396 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444444444556677777777777666 4444444433322 222222 222222 22221
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 041508 669 AMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESMLE 731 (854)
Q Consensus 669 ~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (854)
-.=-.+.|++|=.|=-| -|-+-||+ |..-|..|-.-.+||+--|+
T Consensus 397 elKn~if~~e~~~~dhe--------------~~kneL~~----a~ekld~mgthl~mad~Q~s 441 (1265)
T KOG0976|consen 397 ELKNHIFRLEQGKKDHE--------------AAKNELQE----ALEKLDLMGTHLSMADYQLS 441 (1265)
T ss_pred HHHHhhhhhhhccchhH--------------HHHHHHHH----HHHHHHHHhHHHHHHHHHHh
Confidence 11223555655444322 34456665 44556777777888775443
No 66
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=60.78 E-value=5e+02 Score=34.46 Aligned_cols=35 Identities=26% Similarity=0.143 Sum_probs=25.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSALLRAEELETA 629 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a 629 (854)
..+++.++..-+.|..+.+.-+|.+.++|.|-...
T Consensus 1417 A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~ 1451 (1758)
T KOG0994|consen 1417 AGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQS 1451 (1758)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 35677777777778888888888888877664433
No 67
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=59.96 E-value=4e+02 Score=32.55 Aligned_cols=81 Identities=19% Similarity=0.334 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHhhhhhhHHHhHHHHH--HHHHHHHHHHHHHHHH
Q 041508 645 RVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQK---VTEDARRFAEQDAAAQRYAAQ--VLQEKYEEAIASLAEM 719 (854)
Q Consensus 645 ~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 719 (854)
+|++|..|+..+.+.|.+++.+.++ |++=+--+++.+ |.|--|...|--++.+.-.-. -|++.--+.|..+-++
T Consensus 372 ~ie~L~~el~~~e~~lqEer~E~qk-L~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~L 450 (546)
T PF07888_consen 372 EIEKLSRELQMLEEHLQEERMERQK-LEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERL 450 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888776665553 333333344433 455555566644433222211 2344445667777777
Q ss_pred HhhhHHH
Q 041508 720 EKRVVMA 726 (854)
Q Consensus 720 ~~~~~~~ 726 (854)
|.|.-|+
T Consensus 451 e~r~~~~ 457 (546)
T PF07888_consen 451 EQRLDKV 457 (546)
T ss_pred HHHHHHh
Confidence 7777664
No 68
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=59.76 E-value=4.7e+02 Score=36.66 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 041508 699 RYAAQVLQEKYEEAIASLAEMEKRVVMAESM 729 (854)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (854)
..-.+-||.+.++--+.++++.|-+.+.++.
T Consensus 1075 e~El~~l~~k~e~e~~~~~~l~k~i~eL~~~ 1105 (1930)
T KOG0161|consen 1075 ESELSQLQSKLEDEQAEVAQLQKQIKELEAR 1105 (1930)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3344556667777667777777766666654
No 69
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=59.27 E-value=4e+02 Score=34.91 Aligned_cols=123 Identities=24% Similarity=0.247 Sum_probs=66.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRI--------------- 659 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~--------------- 659 (854)
.++|+.++..++.++-.+-.+.+.+-..-++++..+.+...+ +.|+.-++..+..|+.+|+-.
T Consensus 663 ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~--~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~ 740 (1074)
T KOG0250|consen 663 IEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEH--IEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLA 740 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHH
Confidence 466777777777777777777777777777777777665544 445555555555555555442
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 041508 660 --LADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEM 719 (854)
Q Consensus 660 --~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (854)
+.++.++=.....-+--+.-+-+.++.=-.-.+.+-|+.|.+++-.+++|+++-.-|..-
T Consensus 741 ~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r 802 (1074)
T KOG0250|consen 741 REIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLR 802 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 111111101110111111111122222223345566788888888888888877766543
No 70
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.96 E-value=2e+02 Score=37.76 Aligned_cols=66 Identities=24% Similarity=0.405 Sum_probs=41.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 594 SVPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMV------KQDNRRQLSARVEQLEQEVSELRRIL 660 (854)
Q Consensus 594 ~~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~------~~d~r~~l~~~~~~le~e~~~~~~~~ 660 (854)
.+.++++++..++.|+..+-++.-. ..+-++|...++++. ++|--..+..+++.|+++++.+.-.+
T Consensus 859 ~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i 930 (1293)
T KOG0996|consen 859 RLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAI 930 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3688889999999999888744333 355566666665554 23333555666666666666544333
No 71
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=56.75 E-value=5e+02 Score=34.49 Aligned_cols=26 Identities=27% Similarity=0.153 Sum_probs=14.8
Q ss_pred hhhHHHHhhhhhhHHHhHHHHHHHHH
Q 041508 682 KVTEDARRFAEQDAAAQRYAAQVLQE 707 (854)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (854)
++++-+-..+|.-+|||+.|-++.+|
T Consensus 1672 ~~~~l~~~r~~g~~~ar~rAe~L~~e 1697 (1758)
T KOG0994|consen 1672 LVDRLLEKRMEGSQAARERAEQLRTE 1697 (1758)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 34444455566666666666655544
No 72
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=56.40 E-value=3.2e+02 Score=34.78 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=23.4
Q ss_pred HHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHH
Q 041508 677 VEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYE 710 (854)
Q Consensus 677 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (854)
.+.|.+..--=--++|.+-+.=||-++||++..|
T Consensus 132 ~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 132 AEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334789999999999999998654
No 73
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=56.36 E-value=2.2e+02 Score=28.48 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041508 641 QLSARVEQLEQEVSELRRILA 661 (854)
Q Consensus 641 ~l~~~~~~le~e~~~~~~~~~ 661 (854)
.|..+|..||.++.+...-|.
T Consensus 77 ~l~rriq~LEeele~ae~~L~ 97 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLK 97 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 566677777777777555554
No 74
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.01 E-value=1e+02 Score=36.73 Aligned_cols=45 Identities=24% Similarity=0.404 Sum_probs=31.3
Q ss_pred hhhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 041508 584 ISLTGDGEIDSVPDLQEQVVWLKVELCRLLEEKRSALLRAEELET 628 (854)
Q Consensus 584 ~~~~~~~e~~~~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~ 628 (854)
..+..|.-.|-+.+|--++..++.++..++.+.+....+.+.|..
T Consensus 50 lGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 50 LGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred cCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555557777778888888888888887777776666644
No 75
>PRK11637 AmiB activator; Provisional
Probab=55.69 E-value=3.9e+02 Score=31.13 Aligned_cols=9 Identities=22% Similarity=0.176 Sum_probs=5.0
Q ss_pred cccCCccCc
Q 041508 773 LLARPFGLG 781 (854)
Q Consensus 773 ~~~~~~~~~ 781 (854)
-++.|||-.
T Consensus 314 ~i~~~fg~~ 322 (428)
T PRK11637 314 PTLHRFGEQ 322 (428)
T ss_pred CccCCCCCC
Confidence 345578743
No 76
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=55.59 E-value=2.8e+02 Score=31.15 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHH
Q 041508 663 KQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKY 709 (854)
Q Consensus 663 ~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (854)
.+|.+.++-|...++++++.+.+.. .-=+-||+|.+.+++.-+
T Consensus 187 ~eEkerR~~q~~~~~~~~~~~~~Ki----~Ar~~a~~yl~~l~~~v~ 229 (291)
T PF06098_consen 187 REEKERRIKQQKERLEKEKELREKI----AARAFAQQYLSDLVPSVL 229 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554443321 111335667666666543
No 77
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=55.52 E-value=2.3e+02 Score=28.38 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 041508 703 QVLQEKYEEAIASLAEMEKRVVMAES 728 (854)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (854)
....+|..+|-...-++|+++...|.
T Consensus 97 ~e~~ekl~e~d~~ae~~eRkv~~le~ 122 (143)
T PF12718_consen 97 KETTEKLREADVKAEHFERKVKALEQ 122 (143)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45566666666666677766665553
No 78
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=54.63 E-value=1.3e+02 Score=29.88 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 630 LMEMVKQDNRRQLSARVEQLEQEVSEL 656 (854)
Q Consensus 630 ~~e~~~~d~r~~l~~~~~~le~e~~~~ 656 (854)
+.+..|++...+|++++.+++.|+..|
T Consensus 13 vTe~~K~~l~~~l~~~i~~~d~el~QL 39 (131)
T PF11068_consen 13 VTEKWKEELLQELQEQIQQLDQELQQL 39 (131)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999984
No 79
>PRK02224 chromosome segregation protein; Provisional
Probab=54.54 E-value=5.6e+02 Score=32.57 Aligned_cols=15 Identities=7% Similarity=0.166 Sum_probs=10.6
Q ss_pred CchhHHHHHHHHhcC
Q 041508 247 PMALRGELWQAFVGV 261 (854)
Q Consensus 247 P~~LR~~VW~lLLGi 261 (854)
.+.-|..+..-++|+
T Consensus 147 ~p~~R~~ii~~l~~l 161 (880)
T PRK02224 147 TPSDRQDMIDDLLQL 161 (880)
T ss_pred CHHHHHHHHHHHhCC
Confidence 456677777777776
No 80
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=54.31 E-value=1.8e+02 Score=30.44 Aligned_cols=65 Identities=28% Similarity=0.415 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 608 ELCRLLEEKRSALLRAEELETALMEMV----KQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQ 672 (854)
Q Consensus 608 El~~ll~e~r~~~lraeele~a~~e~~----~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~ 672 (854)
.+.++..++.....+-++|+..+.+.. ..+.|..+-++.++|+.++.+|+.-|..-.+---..++
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~ 138 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIE 138 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 334444444444444444444443332 22578888899999999999988877744443333333
No 81
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.25 E-value=1.3e+02 Score=31.95 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH
Q 041508 705 LQEKYEEAIASLAEMEKRVVMAESML 730 (854)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (854)
|.+.|.++-..|+...+.+-.++..+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 82
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=54.13 E-value=3e+02 Score=36.41 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=22.4
Q ss_pred hHHHhHHHHHHHHHH--HHHHHHHHHHHHhhhHHH
Q 041508 694 DAAAQRYAAQVLQEK--YEEAIASLAEMEKRVVMA 726 (854)
Q Consensus 694 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 726 (854)
.++-|.....|.+|| |++|-+.+.+||...-|-
T Consensus 699 e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L 733 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYL 733 (1317)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 455556666677665 677778888888876543
No 83
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=53.88 E-value=5.4e+02 Score=32.25 Aligned_cols=60 Identities=30% Similarity=0.390 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHhhhhHHH-----------Hhhhhh
Q 041508 645 RVEQLEQEVSELRRILADKQEQESAMI--------------------QVLMRVEQEQKVTEDA-----------RRFAEQ 693 (854)
Q Consensus 645 ~~~~le~e~~~~~~~~~~~~~~~~~~~--------------------~~~~r~~q~~~~~~~~-----------~~~~~~ 693 (854)
+|-.|+.|...|+++|++|.|-|.--. +++|--=++|..++.| +-.++|
T Consensus 496 ~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQ 575 (961)
T KOG4673|consen 496 LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQ 575 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhh
Confidence 778899999999999999987664332 2333333455555433 345778
Q ss_pred hHHHhHHHHHH
Q 041508 694 DAAAQRYAAQV 704 (854)
Q Consensus 694 ~~~~~~~~~~~ 704 (854)
|-|.+|.---|
T Consensus 576 dear~~~~~lv 586 (961)
T KOG4673|consen 576 DEARERESMLV 586 (961)
T ss_pred hHHHHHHHHHH
Confidence 88877754333
No 84
>PRK10884 SH3 domain-containing protein; Provisional
Probab=52.14 E-value=1.5e+02 Score=31.56 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=11.2
Q ss_pred cccHHHHHHHHHHHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEE 615 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e 615 (854)
++.++.|+..++.+|..+.++
T Consensus 95 lp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 455666665555555544433
No 85
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=51.61 E-value=2.9 Score=48.35 Aligned_cols=129 Identities=23% Similarity=0.262 Sum_probs=85.3
Q ss_pred hhhcCCcCCCCCCCCChhhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcCChHHHHHHHHHhhHhhhcCCCCchhH
Q 041508 313 IEKDLPRTFPGHPALDNDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYFDGYYSEEMI 392 (854)
Q Consensus 313 IekDV~RTfp~~~~F~e~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~EedAFw~f~~Lm~~~l~~yfs~~~~ 392 (854)
|..|+..|+. ++...++..=. |.+|.-+|++++|| +..+.+ -.++++..+..
T Consensus 3 ~~~~~~~~~~---~~~~~~~~~~~--l~~~~~~~~~~~~~--~~~~~~---------------------~~~~~~~~~~~ 54 (397)
T KOG1102|consen 3 IDSPVRLTFR---LRPRYGQKQNN--LAAYEPYNPEVGYC--VLHITS---------------------KSDGFQSSNER 54 (397)
T ss_pred CCcccccccc---CCCCccccccc--ccCCCccccccccc--hhhhhh---------------------cccccccCCcc
Confidence 4556666665 33222211111 88999999999999 544444 22334333333
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 041508 393 ESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELY 471 (854)
Q Consensus 393 ~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~LFrvaLAIL~~~ 471 (854)
.................+.-..|+...+ ........|+.-.|..........++||.++.++... +..+.-..++.+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 131 (397)
T KOG1102|consen 55 KLTELRDSPESIPDLSQSKRPGHVDSSE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKLLEGEQE-LTALSSSWLKVI 131 (397)
T ss_pred cccccccCcccccccccccccccccccc-cccccccccccccccccccccccchhHHHHhhhhHHH-HHHHHHHhhhhc
Confidence 3333222334445556677778888888 7778888999999999999999999999999999887 665665555544
No 86
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=51.19 E-value=9 Score=45.57 Aligned_cols=33 Identities=24% Similarity=0.636 Sum_probs=27.7
Q ss_pred CHHHHHHHHhCCCCchhHHHHHHHHhcCccCCC
Q 041508 234 WKEELEVLVRGGLPMALRGELWQAFVGVRARRV 266 (854)
Q Consensus 234 ~~ekLk~Lir~GIP~~LR~~VW~lLLGi~~~~~ 266 (854)
+..-|+.+..+||++.+|+.+|.+|+|++....
T Consensus 66 ~~~~l~~i~~~gi~psir~evw~fll~~y~~~~ 98 (488)
T KOG2197|consen 66 FVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDS 98 (488)
T ss_pred hhhhheeeecCCCCCcccchhHHHHhcccCCCC
Confidence 345577788899999999999999999988544
No 87
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=50.96 E-value=5.5e+02 Score=31.42 Aligned_cols=20 Identities=20% Similarity=0.101 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041508 700 YAAQVLQEKYEEAIASLAEM 719 (854)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~ 719 (854)
.++.-|||++.+-...=.++
T Consensus 382 ~~e~~lqEer~E~qkL~~ql 401 (546)
T PF07888_consen 382 MLEEHLQEERMERQKLEKQL 401 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455666666555443333
No 88
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.66 E-value=2.7e+02 Score=35.00 Aligned_cols=108 Identities=24% Similarity=0.217 Sum_probs=67.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSAL---LRAEELETALMEMVKQD---NRRQLSARVEQLEQEVSELRRILADKQEQESA 669 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~---lraeele~a~~e~~~~d---~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~ 669 (854)
..++..+..+..|-.++--++.++. -+|.+++|.+.+-|++. .--.|+||+|++++--+. .+.+.-...+
T Consensus 298 E~~~~~v~~~t~E~tQ~~~~ve~~~~e~~~A~~~~T~~~~~vk~~~G~~~~~LsA~~E~~~~~r~~----~~~~~~~~~a 373 (1104)
T COG4913 298 EEQETLVRQFTVEQTQAKSKVESAKIETDRAREMETLAHDNVKQIVGAQHGILSAKREGAVDKRRT----ISTARAGLDA 373 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH----HHHhhhHHHH
Confidence 4555666667777777766665544 78899999999999876 336789999999876555 3445555555
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHH
Q 041508 670 MIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLA 717 (854)
Q Consensus 670 ~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (854)
.+..| .---.|+|--+-|+.- +++.+| +.|-.|..+|-
T Consensus 374 Lv~~l-----~~aAP~~A~~~L~~~~---~~~~~~--dE~~AA~E~L~ 411 (1104)
T COG4913 374 LVKGL-----GGAAPESAEELLELNN---AARLTV--DEYPAAREALE 411 (1104)
T ss_pred HHHhc-----cCCCcccHHHHHHHHH---HHHHhH--hhhHHHHHHHH
Confidence 55544 1223455555555432 223332 55666665554
No 89
>PRK02224 chromosome segregation protein; Provisional
Probab=50.50 E-value=5.4e+02 Score=32.71 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 639 RRQLSARVEQLEQEVSELRRILADKQE 665 (854)
Q Consensus 639 r~~l~~~~~~le~e~~~~~~~~~~~~~ 665 (854)
+..|..+.++|+....+|++.+++.+.
T Consensus 309 ~~~l~~~~~~l~~k~~el~~~l~~~~~ 335 (880)
T PRK02224 309 AEAVEARREELEDRDEELRDRLEECRV 335 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544443
No 90
>PHA02562 46 endonuclease subunit; Provisional
Probab=49.38 E-value=5.1e+02 Score=30.83 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhh
Q 041508 645 RVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQD 694 (854)
Q Consensus 645 ~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~ 694 (854)
+...|+.++.+|.....+ .-..|=+++.+.+-..+.+.--+.+
T Consensus 359 ~~~~l~~ei~~l~~~~~~-------~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 359 KAKKVKAAIEELQAEFVD-------NAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHhhhhc-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544333 2233444444444444444433333
No 91
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=48.97 E-value=2.2e+02 Score=28.42 Aligned_cols=68 Identities=22% Similarity=0.371 Sum_probs=31.9
Q ss_pred hHHhhhhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 580 DEVLISLTGDGEIDSVPDLQEQVVWLKVELCRLLEEKRSALLRAEELETA-LMEMVKQDNRRQLSARVEQLEQEVSELR 657 (854)
Q Consensus 580 ~~~~~~~~~~~e~~~~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a-~~e~~~~d~r~~l~~~~~~le~e~~~~~ 657 (854)
++.|.++.| .+|-.++.=+-.|-.-.|+++|+.+ +.-.-.-. ....|. ++.+|.++...|.++|..|+
T Consensus 26 Dd~LvsmSV-------ReLNr~LrG~~reEVvrlKQrRRTL-KNRGYA~sCR~KRv~--Qk~eLE~~k~~L~qqv~~L~ 94 (135)
T KOG4196|consen 26 DDELVSMSV-------RELNRHLRGLSREEVVRLKQRRRTL-KNRGYAQSCRVKRVQ--QKHELEKEKAELQQQVEKLK 94 (135)
T ss_pred HHHHHHhhH-------HHHHHHhcCCCHHHHHHHHHHHHHH-hhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 566777755 5555555444444444555555543 22221111 112222 24555555555555555543
No 92
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=48.77 E-value=5e+02 Score=32.03 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 041508 702 AQVLQEKYEEA 712 (854)
Q Consensus 702 ~~~~~~~~~~~ 712 (854)
.++|.+.++..
T Consensus 489 ~~~l~~~~~~l 499 (650)
T TIGR03185 489 KKTLKEFREKL 499 (650)
T ss_pred HHHHHHHHHHH
Confidence 34455444443
No 93
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.77 E-value=3e+02 Score=29.64 Aligned_cols=70 Identities=20% Similarity=0.288 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041508 610 CRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQ 681 (854)
Q Consensus 610 ~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~ 681 (854)
.++..++.....+.+.|...+...-. -..+|+..++++++++++|.+-+.+-++-+..+.-.|.+|-.+.
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~--~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEV--YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444333444444444432222 25677888888888888888888888877777777666665443
No 94
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=48.02 E-value=4.3e+02 Score=29.44 Aligned_cols=114 Identities=29% Similarity=0.311 Sum_probs=65.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLM 675 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~ 675 (854)
-.|-.++..+...+...+++.|..+-.=-..|..+.. .+|.|+-|..++..|+.. +-+ . ..|.
T Consensus 106 gvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p--~R~~r~~l~d~I~kLk~k---------~P~---s---~kl~ 168 (271)
T PF13805_consen 106 GVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQP--SRDRRRKLQDEIAKLKYK---------DPQ---S---PKLV 168 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH----------TT---T---TTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHhHHHHHHHHHHHhc---------CCC---C---hHHH
Confidence 4456666666777778888888777444556666643 556677787777776531 111 1 1234
Q ss_pred HHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHH
Q 041508 676 RVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEM-EKRVVMAES 728 (854)
Q Consensus 676 r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 728 (854)
.+|||..-+|..---|| |.---+--+-|.|-|.-=+++|-+| ||-+++|+-
T Consensus 169 ~LeqELvraEae~lvaE--AqL~n~kR~~lKEa~~~~f~Al~E~aEK~~Ila~~ 220 (271)
T PF13805_consen 169 VLEQELVRAEAENLVAE--AQLSNIKRQKLKEAYSLKFDALIERAEKQAILAEY 220 (271)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454433332222233 3334455556777776666666665 677777775
No 95
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=47.14 E-value=4.1e+02 Score=28.90 Aligned_cols=119 Identities=24% Similarity=0.287 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041508 603 VWLKVELCRLLEEKRSALLRA-EELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQ 681 (854)
Q Consensus 603 ~~lk~El~~ll~e~r~~~lra-eele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~ 681 (854)
..-+.||...|......+.++ ++|..+- +-...|-.+...++.+...|.+ ++..- -+.+-||+.+.
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e------~~a~~Leek~k~aeeea~~Le~----k~~ea---ee~~~rL~~~~ 70 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESE------ETAEELEEKLKQAEEEAEELEQ----KRQEA---EEEKQRLEEEA 70 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHH
Confidence 344556666666666666444 2232222 1122333344444433333222 21111 12222333333
Q ss_pred hhhHHHHhhhhhh-HHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 041508 682 KVTEDARRFAEQD-AAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESMLEATLQ 735 (854)
Q Consensus 682 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (854)
.-++.-|..-++. ++++..++.+-+ -.+..-+--.++.+++..|.-.++.|.+
T Consensus 71 ~~~~eEk~~Le~e~~e~~~~i~~l~e-e~~~ke~Ea~~lq~el~~ar~~~~~ak~ 124 (246)
T PF00769_consen 71 EMQEEEKEQLEQELREAEAEIARLEE-ESERKEEEAEELQEELEEAREDEEEAKE 124 (246)
T ss_dssp ----------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333332 334444444333 3333444455667777777777666554
No 96
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=47.02 E-value=2.5e+02 Score=26.29 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=56.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSALLRAEELET-------------ALMEMVKQDNRRQLSARVEQLEQEVSELRRILA 661 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~-------------a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~ 661 (854)
.+.|+++...+...+.++..+++....--++|+. ++++.=+.+..-.|..+++.++.++..+.+-+.
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~ 87 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEE 87 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777777777777777666666553 344434666778888888888888888888887
Q ss_pred HHHHHHHHHHHHH
Q 041508 662 DKQEQESAMIQVL 674 (854)
Q Consensus 662 ~~~~~~~~~~~~~ 674 (854)
+.+++-...-..|
T Consensus 88 ~l~~~~~elk~~l 100 (105)
T cd00632 88 DLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHH
Confidence 7776655444444
No 97
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=46.24 E-value=8.8e+02 Score=32.44 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=10.9
Q ss_pred cccHHHHHHHHHHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLE 614 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~ 614 (854)
.+.++.++..++.++..|..
T Consensus 354 l~~~~~~~~~l~~~~~~Lt~ 373 (1201)
T PF12128_consen 354 LPEWRNELENLQEQLDLLTS 373 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46666666666644444443
No 98
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=46.19 E-value=1.5e+02 Score=33.37 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=55.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQ 666 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~ 666 (854)
.-.-++++..|-.+++.+-...+.-+...|+|-..|... +++..+|.+++..|...-+|...+|.+-||+
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s--ke~Q~~L~aEL~elqdkY~E~~~mL~EaQEE 298 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS--KESQRQLQAELQELQDKYAECMAMLHEAQEE 298 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888888899999888655 5778888888887777777777777776664
No 99
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=45.43 E-value=1.1e+02 Score=28.27 Aligned_cols=66 Identities=21% Similarity=0.198 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 600 EQVVWLKVELCRLLEEKRSALLRAEELETALMEMV---------KQDNRRQLSARVEQLEQEVSELRRILADKQE 665 (854)
Q Consensus 600 eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~---------~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~ 665 (854)
+....|+.|..+|-+....+..-...|+.|+.... .-.+..+|-+.++.||.||..|++-+.+-..
T Consensus 8 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~ 82 (88)
T PF14389_consen 8 ERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYR 82 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666655556666664322 1124577888888899999888877766543
No 100
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=45.33 E-value=2.7e+02 Score=28.95 Aligned_cols=73 Identities=23% Similarity=0.272 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAM 670 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~ 670 (854)
..|+.++..|+.++..+-++++...-..+.|..++.-.-.+ --.+..|...|+.|=.+|-+-+=++..+|+..
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~--~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~ 191 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQ--LNMLEEKLRKLEEENRELVERWMQRKAQEAER 191 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333333333333222222 23444566666666666544444444444443
No 101
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=45.16 E-value=43 Score=28.88 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 640 RQLSARVEQLEQEVSELRRILADKQEQESA 669 (854)
Q Consensus 640 ~~l~~~~~~le~e~~~~~~~~~~~~~~~~~ 669 (854)
.+|.+.++.|++|+++++..+..|+-...|
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K~a~r~A 53 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKKSASRAA 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999888776554
No 102
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=44.99 E-value=3.6e+02 Score=27.62 Aligned_cols=20 Identities=45% Similarity=0.705 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041508 638 NRRQLSARVEQLEQEVSELR 657 (854)
Q Consensus 638 ~r~~l~~~~~~le~e~~~~~ 657 (854)
-++.|..++++|+.+...|.
T Consensus 90 e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 90 ERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777766
No 103
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=44.69 E-value=8.2e+02 Score=31.90 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHh
Q 041508 626 LETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQE------------SAMIQVLMRVEQEQ 681 (854)
Q Consensus 626 le~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~------------~~~~~~~~r~~q~~ 681 (854)
||.++-.|+.+-..+--.+--.+|+.++++-++.+.|-++|- ++|++.-||+|=..
T Consensus 914 le~~l~~~iEk~lks~~d~~~~rl~e~la~~e~~~r~~~~qi~q~ltq~~s~~~~~~~e~ti~~El~~ 981 (1283)
T KOG1916|consen 914 LEVALGRMIEKSLKSNADALWARLQEELAKNEKALRDLQQQITQQLTQFLSKELNAMFEKTIKKELAK 981 (1283)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888887665444444445567778888888888888774 47888888877443
No 104
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=44.62 E-value=2.2e+02 Score=35.39 Aligned_cols=78 Identities=31% Similarity=0.361 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 600 EQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQ 679 (854)
Q Consensus 600 eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q 679 (854)
.|+..|+.|-.++-....++.-|+-+++..+- ..|.-.-+|..+..+|+.|..++ |.+-++..=.+||.||+
T Consensus 704 ~q~sllraE~~~l~~~le~e~nr~~~~~~e~~--~~qeE~~~l~~r~~~le~e~r~~------k~~~~q~lq~~ll~ve~ 775 (961)
T KOG4673|consen 704 IQLSLLRAEQGQLSKSLEKERNRAAENRQEYL--AAQEEADTLEGRANQLEVEIREL------KRKHKQELQEVLLHVEL 775 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHH
Confidence 33444444444444443344444444443332 11222344555666666666663 33333444457899999
Q ss_pred HhhhhH
Q 041508 680 EQKVTE 685 (854)
Q Consensus 680 ~~~~~~ 685 (854)
+||-.|
T Consensus 776 ~~k~~e 781 (961)
T KOG4673|consen 776 IQKDLE 781 (961)
T ss_pred HHHHhh
Confidence 887543
No 105
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=44.09 E-value=4.9e+02 Score=29.39 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 041508 704 VLQEKYEEAIASLAEMEKRVVMAES 728 (854)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (854)
-|...|+-+-..|..+.+.-|+-.+
T Consensus 117 sl~~q~~~~~~~L~~L~ktNv~n~~ 141 (314)
T PF04111_consen 117 SLKNQYEYASNQLDRLRKTNVYNDT 141 (314)
T ss_dssp HHHHHHHHHHHHHHCHHT--TTTTT
T ss_pred HHHHHHHHHHHHHHHHHhcCchhce
Confidence 3455666777777778777666544
No 106
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=43.64 E-value=3.1e+02 Score=31.06 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=10.0
Q ss_pred HHHHHHHhhhHHHHHHHHHH
Q 041508 714 ASLAEMEKRVVMAESMLEAT 733 (854)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~ 733 (854)
+-+.+++..+-+|+.+++..
T Consensus 278 ~~~~~L~re~~~a~~~y~~~ 297 (362)
T TIGR01010 278 ADYQRLVLQNELAQQQLKAA 297 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555433
No 107
>PRK03918 chromosome segregation protein; Provisional
Probab=43.13 E-value=8e+02 Score=31.08 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041508 642 LSARVEQLEQEVSELRRIL 660 (854)
Q Consensus 642 l~~~~~~le~e~~~~~~~~ 660 (854)
++.+++.+++++.+|++..
T Consensus 264 l~~el~~l~~~l~~l~~~~ 282 (880)
T PRK03918 264 LEERIEELKKEIEELEEKV 282 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443333
No 108
>PRK10698 phage shock protein PspA; Provisional
Probab=41.87 E-value=4.7e+02 Score=28.04 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Q 041508 710 EEAIASLAEMEKRVVMAESMLEAT 733 (854)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~ 733 (854)
..|++.+..||.|+-=.|.-.||.
T Consensus 162 ~~a~~~f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 162 DEAMARFESFERRIDQMEAEAESH 185 (222)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHh
Confidence 457888899999999888888884
No 109
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=40.67 E-value=9.5e+02 Score=31.24 Aligned_cols=106 Identities=26% Similarity=0.288 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHhhhhh-------h
Q 041508 624 EELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLM--RVEQEQKVTEDARRFAEQ-------D 694 (854)
Q Consensus 624 eele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~--r~~q~~~~~~~~~~~~~~-------~ 694 (854)
.++=..+++.+..-+-.|+.+=-+.+|+|-.||++.+..|.-....- ..-+ +.|+|..++|-++..-+. =
T Consensus 1062 ~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~-~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL 1140 (1189)
T KOG1265|consen 1062 KEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKV-DKVIKDKAERERRKRELNSSNIKEFVEERKRL 1140 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777777778888888999999999999887665433221 1111 344555555544432221 1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 041508 695 AAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESMLE 731 (854)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (854)
|.+|.---.-|+++--+-...|+++|+. .-||-+-|
T Consensus 1141 ~~~~~k~~e~L~k~~~~~leql~e~~ka-l~~e~~~~ 1176 (1189)
T KOG1265|consen 1141 AEKQSKRQEQLVKKHLEVLEQLAEEEKA-LDAEAEQE 1176 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHH
Confidence 1223333456778888888888988554 55554433
No 110
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=40.35 E-value=11 Score=43.55 Aligned_cols=12 Identities=25% Similarity=1.079 Sum_probs=10.3
Q ss_pred HHHHHHHhhHhh
Q 041508 371 AFWALMGILDDY 382 (854)
Q Consensus 371 AFw~f~~Lm~~~ 382 (854)
+||||+.+|..+
T Consensus 561 tfwcfvglmqgm 572 (781)
T KOG2224|consen 561 TFWCFVGLMQGM 572 (781)
T ss_pred hhhhhhhhhccc
Confidence 699999999865
No 111
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=40.29 E-value=8.4e+02 Score=30.54 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=10.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHh
Q 041508 714 ASLAEMEKRVVMAESMLEATL 734 (854)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~ 734 (854)
.-+.+++..+-+++.+++..|
T Consensus 376 ~e~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 376 VDLDALQRDAAAKRQLYESYL 396 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555443
No 112
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=40.12 E-value=6.8e+02 Score=29.40 Aligned_cols=23 Identities=30% Similarity=0.091 Sum_probs=14.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRS 618 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~ 618 (854)
..++.++..++.++.+|..++..
T Consensus 100 ~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 100 QLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666555543
No 113
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=39.64 E-value=3.3e+02 Score=25.60 Aligned_cols=116 Identities=28% Similarity=0.427 Sum_probs=64.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 597 DLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMR 676 (854)
Q Consensus 597 ~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r 676 (854)
.|.++...+. +|..++++.+.++... +++ .+.+.+.+ -..+..+++.+++....+...+..+ .+...|..++.
T Consensus 9 ~L~~~~~~~~-~L~~ll~~e~~~l~~~-d~~-~l~~~~~~--k~~l~~~l~~le~~r~~~~~~~~~~--~~~~~l~~~~~ 81 (143)
T PF05130_consen 9 LLEEQIELLQ-ELLELLEEEREALISG-DID-ELEELVEE--KQELLEELRELEKQRQQLLAKLGAE--PEEATLSELIE 81 (143)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHTT-HHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTT----SCHHHHHHHHC
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhC-CHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCc--cccccHHHHHh
Confidence 3445554454 8888888888888655 222 23333333 3455556666665555544444333 23344444433
Q ss_pred HHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccC
Q 041508 677 VEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESMLEATLQYQSGQIKA 743 (854)
Q Consensus 677 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (854)
...-|+..|.+....+.++-...-+-...++..+.+-.+-...
T Consensus 82 ------------------------~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~~~~~~~l~~ 124 (143)
T PF05130_consen 82 ------------------------EREELQALWRELRELLEELQELNERNQQLLEQALEFVQQLLNL 124 (143)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334556666666677777666666777777776665554444
No 114
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=39.56 E-value=6.6e+02 Score=29.72 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccCC
Q 041508 708 KYEEAIASLAEMEKRVVMAESMLEATLQYQSGQIKAQ 744 (854)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (854)
.++.|+-+|.+|=...-.+|-+-+|+.----+..+.+
T Consensus 108 e~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~~~r~~ 144 (459)
T KOG0288|consen 108 EFENAELALREMRRKMRIAERLAEALKDLGLKDLRRQ 144 (459)
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 3667888888877777778877787765554444443
No 115
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.49 E-value=3.8e+02 Score=26.27 Aligned_cols=77 Identities=27% Similarity=0.320 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Q 041508 597 DLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQE------SAM 670 (854)
Q Consensus 597 ~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~------~~~ 670 (854)
.+++++..+..+-..+-+|+.+.+-+.|++.....+ -..|.+++..|++...-+.++|-+|-|+- .+.
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~------~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEELRALKKE------VEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 344444444444444444444444445554333221 23455566666666666666665555542 344
Q ss_pred HHHHHHHHH
Q 041508 671 IQVLMRVEQ 679 (854)
Q Consensus 671 ~~~~~r~~q 679 (854)
|+.|+|-+-
T Consensus 108 lK~myr~Qi 116 (120)
T PF12325_consen 108 LKEMYREQI 116 (120)
T ss_pred HHHHHHHHH
Confidence 555555443
No 116
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=38.47 E-value=3.4e+02 Score=28.98 Aligned_cols=74 Identities=35% Similarity=0.399 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHH----hHHHH---HHHHHHH-------HH---HH
Q 041508 651 QEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAA----QRYAA---QVLQEKY-------EE---AI 713 (854)
Q Consensus 651 ~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~-------~~---~~ 713 (854)
..+..|++.|.+|.|+=-+.=-.|++.||+- +-|-+-+-+--|||| ||=.. |-=+++| |+ |-
T Consensus 57 ~~~~~L~~~LrEkEErILaLEad~~kWEqkY-LEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~ 135 (205)
T PF12240_consen 57 NNASNLKELLREKEERILALEADMTKWEQKY-LEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMAN 135 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhh
Confidence 3467788999999999888777888888876 666665555555553 43331 1112333 22 33
Q ss_pred HHHHHHHhhhHH
Q 041508 714 ASLAEMEKRVVM 725 (854)
Q Consensus 714 ~~~~~~~~~~~~ 725 (854)
.-..+||.|.--
T Consensus 136 ~K~qemE~RIK~ 147 (205)
T PF12240_consen 136 RKCQEMENRIKA 147 (205)
T ss_pred hhHHHHHHHHHH
Confidence 456889999643
No 117
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=38.36 E-value=8.8e+02 Score=30.20 Aligned_cols=131 Identities=21% Similarity=0.220 Sum_probs=60.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----HHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRA--EELETALMEMVKQDNRRQLSARV----EQLEQEVS----ELRRILADKQE 665 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lra--eele~a~~e~~~~d~r~~l~~~~----~~le~e~~----~~~~~~~~~~~ 665 (854)
..|++|-..-+..+.+++++.|-.--|| ++++-++ +.....+..++..++ .+|+.|+. +..++-.|.=+
T Consensus 332 ~~l~d~k~~~~~~~~~aiEk~Rl~~~~a~~~~~~~~~-~~h~~~~~~E~~~~~~~~~~~~~~el~~ql~~qa~ah~dhik 410 (657)
T KOG1854|consen 332 KELEDQKADEELHIKRAIEKQRLQDSRALRAQLEYEL-EAHRRELQQELFKLIEEIRSSSKNELRNQLKRQAKAHLDHIK 410 (657)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhhhhHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555567777888888764333 2333222 222222222222222 22333332 22223333333
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHH----hhhhh-hHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 041508 666 QESAMIQVLMRVEQEQKVTEDAR----RFAEQ-DAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESMLEAT 733 (854)
Q Consensus 666 ~~~~~~~~~~r~~q~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (854)
+-.+.=+.++.+|++|||.|--- -.-.| |+|-+|- .--|+|+...++||.-+--|=.|.-|+
T Consensus 411 ~vvr~q~q~~~~e~~~~~~e~~l~ernl~~~qvg~aL~rL------rgie~aL~~~~~~~~e~r~a~q~w~ac 477 (657)
T KOG1854|consen 411 DVVRQQEQLLTIEFKQKLEEAVLQERNLHSSQVGKALSRL------RGIEQALQERVRAELEARKAKQLWLAC 477 (657)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcchHhHHHHHHHHH------HhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444445677777887765210 00111 1111111 124677777777777666666665554
No 118
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=38.13 E-value=97 Score=30.67 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041508 639 RRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQ 681 (854)
Q Consensus 639 r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~ 681 (854)
|+++.|+|..||+|...++.+..|- -....||+.-++-|...
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL-~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDL-KRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 7888999999999999977776654 67889999887766554
No 119
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=38.10 E-value=6.4e+02 Score=28.51 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=5.9
Q ss_pred cHHHHHHHHHHHHH
Q 041508 597 DLQEQVVWLKVELC 610 (854)
Q Consensus 597 ~l~eq~~~lk~El~ 610 (854)
.++.++..++.++.
T Consensus 85 ~l~~~~~~l~a~~~ 98 (423)
T TIGR01843 85 ELESQVLRLEAEVA 98 (423)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 120
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=37.84 E-value=93 Score=32.67 Aligned_cols=29 Identities=28% Similarity=0.574 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 640 RQLSARVEQLEQEVSELRRILADKQEQES 668 (854)
Q Consensus 640 ~~l~~~~~~le~e~~~~~~~~~~~~~~~~ 668 (854)
.+|.+++.++|.|+..|||+|+.|+..-.
T Consensus 47 eelr~EL~kvEeEI~TLrqVLaAKerH~~ 75 (208)
T KOG4010|consen 47 EELRTELAKVEEEIVTLRQVLAAKERHAA 75 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888899999999999999876543
No 121
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=37.71 E-value=5.5e+02 Score=27.64 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041508 645 RVEQLEQEVSELRRILADKQ 664 (854)
Q Consensus 645 ~~~~le~e~~~~~~~~~~~~ 664 (854)
+++.|..++.++++.+.+++
T Consensus 71 r~~~l~~~i~~~~~~i~~~r 90 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKR 90 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 122
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=37.58 E-value=2.3e+02 Score=29.23 Aligned_cols=28 Identities=32% Similarity=0.657 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 639 RRQLSARVEQLEQEVSELRRILADKQEQ 666 (854)
Q Consensus 639 r~~l~~~~~~le~e~~~~~~~~~~~~~~ 666 (854)
|.+|...+.++|.|+..|||+|+.|+.+
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~ 58 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERH 58 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445556677777777777776554
No 123
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=37.46 E-value=2.9e+02 Score=29.15 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=49.1
Q ss_pred hhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 041508 585 SLTGDGEIDSVPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNR--RQLSARVEQLEQEVSELRRILAD 662 (854)
Q Consensus 585 ~~~~~~e~~~~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r--~~l~~~~~~le~e~~~~~~~~~~ 662 (854)
.+..|........|+.++..+..++......+-.---..+-....+...+...++ ..+.+.+..|..|+.+|.+-|.+
T Consensus 110 ~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 110 KLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444566666666666555544444433333334444455545545544 56677899999999999999988
Q ss_pred HHH
Q 041508 663 KQE 665 (854)
Q Consensus 663 ~~~ 665 (854)
|..
T Consensus 190 Ker 192 (194)
T PF15619_consen 190 KER 192 (194)
T ss_pred Hhh
Confidence 864
No 124
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.35 E-value=6.7e+02 Score=28.53 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHhhhhhhHHHhHHH
Q 041508 624 EELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVT--EDARRFAEQDAAAQRYA 701 (854)
Q Consensus 624 eele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~--~~~~~~~~~~~~~~~~~ 701 (854)
|+.|+-..+.+-...-....+++++++++=...=..=..+..++.+.++.++..||+++-- ..||.-.+.+-+..+-+
T Consensus 100 E~vEdii~nL~~~~d~~~te~~l~~y~~~n~~~I~~n~~~~~~e~~~~~~~~~~E~~~~~~rr~~~~~~e~ee~~~~~~~ 179 (309)
T TIGR00570 100 EEVEDIVYNLTNNIDLENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKN 179 (309)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH----HHHHHHHHHhhhHHHHH
Q 041508 702 AQVLQEKYEE----AIASLAEMEKRVVMAES 728 (854)
Q Consensus 702 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 728 (854)
-+-+-..-.. |-..+++-.++.|+.+.
T Consensus 180 ~~~~ld~L~~s~~~~~~~i~~~~~~~~~~k~ 210 (309)
T TIGR00570 180 KQALLDELETSTLPAAELIAQHKKNSVKLEM 210 (309)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
No 125
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=37.28 E-value=7.7e+02 Score=29.22 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041508 600 EQVVWLKVELCRLLEEKRSALLRAEELETAL 630 (854)
Q Consensus 600 eq~~~lk~El~~ll~e~r~~~lraeele~a~ 630 (854)
+|+.....||.++-.+++..--+...|++.+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~l 68 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQL 68 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333344333
No 126
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.84 E-value=9e+02 Score=30.54 Aligned_cols=88 Identities=25% Similarity=0.387 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHhhhhhhHHHhHHHH-----------HHH
Q 041508 640 RQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQK---VTEDARRFAEQDAAAQRYAA-----------QVL 705 (854)
Q Consensus 640 ~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~---~~~~~~~~~~~~~~~~~~~~-----------~~~ 705 (854)
++...=...+.+|-++|=+++.-.-.-..||+..-||+----- .-|..+.|+||.+-.||-+. ..|
T Consensus 1020 r~ie~Lk~rqtqerarLPKiqRSE~KTRmaMfKkSLrIn~~~s~ae~rekIkqF~~QEekRqk~er~~q~qKhenqmrdl 1099 (1187)
T KOG0579|consen 1020 REIEDLKRRQTQERARLPKIQRSETKTRMAMFKKSLRINANMSNAEMREKIKQFDEQEEKRQKAEREDQDQKHENQMRDL 1099 (1187)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHheeccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444555666666666655666677777777632110 12445677777777666543 468
Q ss_pred HHHHHHHHHHHHHH--HhhhHHHH
Q 041508 706 QEKYEEAIASLAEM--EKRVVMAE 727 (854)
Q Consensus 706 ~~~~~~~~~~~~~~--~~~~~~~~ 727 (854)
++..|++|--|.|| ||+-.+.|
T Consensus 1100 ~~qce~ni~EL~qlQNEKchlLvE 1123 (1187)
T KOG0579|consen 1100 KEQCEENIIELDQLQNEKCHLLVE 1123 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999988 55555544
No 127
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=36.74 E-value=1.5e+02 Score=37.12 Aligned_cols=91 Identities=29% Similarity=0.448 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQD------------------NRRQLSARVEQLEQEVSEL 656 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d------------------~r~~l~~~~~~le~e~~~~ 656 (854)
..+|+.++..|+.|+.++...+-....+.++++..+.++-++. .=|+-..++++||.+|...
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~Y 320 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKY 320 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777776666654444444455566665553332221 1133344777788877776
Q ss_pred HHHHHHH----------HHHHHHHHHHHHHHHHHhhhhH
Q 041508 657 RRILADK----------QEQESAMIQVLMRVEQEQKVTE 685 (854)
Q Consensus 657 ~~~~~~~----------~~~~~~~~~~~~r~~q~~~~~~ 685 (854)
|+=|.|. +++-+..|+....+|.+.+-+.
T Consensus 321 KkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~ 359 (713)
T PF05622_consen 321 KKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR 359 (713)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6665554 3444555666667777665443
No 128
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.43 E-value=7.8e+02 Score=29.42 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 600 EQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELR 657 (854)
Q Consensus 600 eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~ 657 (854)
.|+..++..+..++.+.++.--....++++-. ...+.-.|+++|+..+..|+.+++
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk--~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKK--IVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666553333333333321 122234788899999988887744
No 129
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=36.28 E-value=1.2e+03 Score=31.20 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 041508 332 RNALRRLLTAYARHNPSVGYCQAMNFFAALL 362 (854)
Q Consensus 332 ~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~L 362 (854)
...|+.+-.-||...+. ..+|++.-|+..+
T Consensus 161 ~~~lr~la~~fSL~~s~-~~~~hI~kli~~v 190 (1201)
T PF12128_consen 161 RKELRALAARFSLCESS-HQYQHIEKLINAV 190 (1201)
T ss_pred chHHHHHHHhcCcCCCc-ccccChHHHHHHH
Confidence 34555555556554322 2346666555554
No 130
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=36.04 E-value=5.8e+02 Score=27.44 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=8.9
Q ss_pred ccHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLE 614 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~ 614 (854)
.++..+...++.++..+++
T Consensus 30 ~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 30 QQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 131
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=35.80 E-value=4.1e+02 Score=26.77 Aligned_cols=71 Identities=24% Similarity=0.291 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVL 674 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~ 674 (854)
+..|++++.-+..++.++-.+...-.-.-+.|...+.++..+ |..||.-...+...|..+....+.|.+.+
T Consensus 54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~k---------v~eLE~~~~~~~~~l~~~E~ek~q~~e~~ 124 (140)
T PF10473_consen 54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEK---------VSELESLNSSLENLLQEKEQEKVQLKEES 124 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
No 132
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=35.49 E-value=6.7e+02 Score=27.97 Aligned_cols=116 Identities=19% Similarity=0.218 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 597 DLQEQVVWLKVELCRLLEEKRSAL-LRAEELETALMEMVKQDNRR-------QLSARVEQLEQEVSELRRILADKQEQES 668 (854)
Q Consensus 597 ~l~eq~~~lk~El~~ll~e~r~~~-lraeele~a~~e~~~~d~r~-------~l~~~~~~le~e~~~~~~~~~~~~~~~~ 668 (854)
.|.-|+..|..|+.+..++.-.-+ +--+.|.+...+-+ +.++. -+++|.+.|+..+.+-+++|+++|+=..
T Consensus 56 ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~lgkeel-qkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~ 134 (268)
T PF11802_consen 56 LLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTLGKEEL-QKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLE 134 (268)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666665554433 22233443333222 22332 3356899999999999999998887666
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 041508 669 AMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAE 718 (854)
Q Consensus 669 ~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (854)
++-...=.+..+..=..+-|+|.|.-. . -+-+.+-|++.|..|..
T Consensus 135 sL~~r~~elk~~~~~~se~rv~~el~~--K---~~~~k~~~e~Ll~~Lge 179 (268)
T PF11802_consen 135 SLNKRHEELKNQVETFSESRVFQELKT--K---IEKIKEYKEKLLSFLGE 179 (268)
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHH--H---HHHHHHHHHHHHHHHHH
Confidence 555555444443333445566643322 2 22234445555655554
No 133
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.34 E-value=39 Score=35.14 Aligned_cols=23 Identities=61% Similarity=0.735 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041508 640 RQLSARVEQLEQEVSELRRILAD 662 (854)
Q Consensus 640 ~~l~~~~~~le~e~~~~~~~~~~ 662 (854)
.+|.|+|+.||+||++|++-|.+
T Consensus 188 ~dlearv~aLe~eva~L~~rld~ 210 (215)
T COG3132 188 SDLEARVEALEQEVAELRARLDS 210 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 44889999999999999988764
No 134
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=35.33 E-value=4.5e+02 Score=27.29 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhh
Q 041508 641 QLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQD 694 (854)
Q Consensus 641 ~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~ 694 (854)
.|.+.+..|+.++..|...+.+|+..=...--.|+-+.=+..+.|+.....+.+
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333332222233333333445555554444443
No 135
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=35.22 E-value=4.5e+02 Score=29.88 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHh
Q 041508 707 EKYEEAIASLAEMEK 721 (854)
Q Consensus 707 ~~~~~~~~~~~~~~~ 721 (854)
-..++|.++|..+-+
T Consensus 89 P~L~~A~~al~~l~k 103 (344)
T PF12777_consen 89 PALEEAQEALKSLDK 103 (344)
T ss_dssp HHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHHHhCCH
Confidence 345566666665544
No 136
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=35.19 E-value=3.6e+02 Score=24.79 Aligned_cols=6 Identities=33% Similarity=0.462 Sum_probs=2.2
Q ss_pred HHHhhh
Q 041508 686 DARRFA 691 (854)
Q Consensus 686 ~~~~~~ 691 (854)
.+-.|+
T Consensus 93 ~~~~~~ 98 (127)
T smart00502 93 HAINFT 98 (127)
T ss_pred HHHHHH
Confidence 333333
No 137
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=34.58 E-value=3.9e+02 Score=33.76 Aligned_cols=121 Identities=25% Similarity=0.308 Sum_probs=54.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSAL-LRAEELETALMEMVKQDNRRQLSARVEQLEQEVSE-LRRILADKQEQESAMIQ 672 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~-lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~-~~~~~~~~~~~~~~~~~ 672 (854)
.++|.+.+..++.|+..-++..-..+ +.-+++...-+..--+.-=-.++.|||.|++|+.. |..++. ==+---+.
T Consensus 599 ~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~---ss~LK~k~ 675 (762)
T PLN03229 599 DDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIR---SSDLKSKI 675 (762)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHHHHHHHhc---chhHHHHH
Confidence 57777888777777665555544333 22222111100000000012335567777666543 111111 00011122
Q ss_pred HHHHHHHHh-----hhhHHHHhhhhhhHHHhHHHH----HHHHHHHHHHHHHHHH
Q 041508 673 VLMRVEQEQ-----KVTEDARRFAEQDAAAQRYAA----QVLQEKYEEAIASLAE 718 (854)
Q Consensus 673 ~~~r~~q~~-----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 718 (854)
.+|++|-.. -+++-.+|-|=+---.|+-|. .-|+||||+..+-|+.
T Consensus 676 E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~e~~~ 730 (762)
T PLN03229 676 ELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAELAA 730 (762)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHH
Confidence 233333321 122334444444444455554 3599999998877764
No 138
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.29 E-value=1.3e+03 Score=31.08 Aligned_cols=37 Identities=32% Similarity=0.484 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 638 NRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVL 674 (854)
Q Consensus 638 ~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~ 674 (854)
.|.+|..+++.|..++.+++..+.+..++-...-+.+
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~ 918 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL 918 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3555666666666666665555555444433333333
No 139
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=34.26 E-value=1.3e+02 Score=27.25 Aligned_cols=44 Identities=39% Similarity=0.508 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHH
Q 041508 639 RRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYA 701 (854)
Q Consensus 639 r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~ 701 (854)
-+.|.+||++||..|.-++- ++| --=.|-||-.++-|.-+|+|.
T Consensus 34 vq~LnAkv~qLe~dv~a~~~---~~q----------------AAk~eaarAn~rldn~a~s~~ 77 (78)
T COG4238 34 VQTLNAKVDQLENDVNAMRS---DVQ----------------AAKDEAARANQRLDNQAQSYC 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHH----------------HhHhHHHHHHHHHHHHHHHhc
Confidence 35788899999887765321 111 112366888888899888884
No 140
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.75 E-value=4.8e+02 Score=32.93 Aligned_cols=20 Identities=45% Similarity=0.720 Sum_probs=11.2
Q ss_pred HHHHhhhccccccCCCCCCC
Q 041508 730 LEATLQYQSGQIKAQPSPRS 749 (854)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~ 749 (854)
+.++++||--|...+.+|+.
T Consensus 658 lk~k~~~Q~~~i~~~~~~~~ 677 (717)
T PF10168_consen 658 LKKKLDYQQRQIESQKSPKK 677 (717)
T ss_pred HHHHHHHHHHHHhccccccC
Confidence 45667777655544444443
No 141
>PLN03086 PRLI-interacting factor K; Provisional
Probab=32.55 E-value=2.3e+02 Score=34.73 Aligned_cols=45 Identities=36% Similarity=0.418 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhH
Q 041508 642 LSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQR 699 (854)
Q Consensus 642 l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~ 699 (854)
|.+..++||+|..+ +.=|.=+|+++|+|.-|+|++.-|.=-|+||
T Consensus 5 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (567)
T PLN03086 5 LRRAREKLEREQRE-------------RKQRAKLKLERERKAKEEAAKQREAIEAAQR 49 (567)
T ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666554 2223346778888887776655554444443
No 142
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=32.55 E-value=5e+02 Score=25.66 Aligned_cols=70 Identities=26% Similarity=0.406 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 608 ELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQ 679 (854)
Q Consensus 608 El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q 679 (854)
=+..|+...++.+...|.|.+.+...-.. -..|...+++|+..++++++-++..++++.++-..+-..+.
T Consensus 39 ~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d--~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 39 CIYDLLQQRDRDMEQREDLSDKLRRLRSD--IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777543322 45566777888888888777777777777766655544333
No 143
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=32.52 E-value=7.9e+02 Score=27.96 Aligned_cols=114 Identities=30% Similarity=0.382 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH--HhHHH------HHHHHHHHHHHHHHHHHHHHHH-------------------
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSAL--LRAEE------LETALMEMVKQDNRRQLSARVE------------------- 647 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~--lraee------le~a~~e~~~~d~r~~l~~~~~------------------- 647 (854)
+..|+-+......+|.+|-.+|...- |.+|+ |-+....+-.. .|.|+++++
T Consensus 144 i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~e--Kr~Lq~~l~~~~s~~~s~~d~~~~~~~~ 221 (310)
T PF09755_consen 144 IERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAE--KRRLQEKLEQPVSAPPSPRDTVNVSEEN 221 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHccccCCCCCcchHHhhcccC
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHH
Q 041508 648 -----------QLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASL 716 (854)
Q Consensus 648 -----------~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (854)
.|-+||++|++.|..-+.+..+.|+.. ++-+..+.++=++. +.+.+.-.|.-|+.-..|
T Consensus 222 Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~--~~eek~ireEN~rL--------qr~L~~E~erreal~R~l 291 (310)
T PF09755_consen 222 DTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQY--LQEEKEIREENRRL--------QRKLQREVERREALCRHL 291 (310)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 041508 717 AEME 720 (854)
Q Consensus 717 ~~~~ 720 (854)
+++|
T Consensus 292 sesE 295 (310)
T PF09755_consen 292 SESE 295 (310)
T ss_pred HHHH
No 144
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=31.98 E-value=1e+03 Score=29.00 Aligned_cols=75 Identities=25% Similarity=0.346 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHH---hHHHHHHHHHHHHHHHHH
Q 041508 639 RRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAA---QRYAAQVLQEKYEEAIAS 715 (854)
Q Consensus 639 r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 715 (854)
++.+.|++-.|-.||+. +.|.-...=..-+-+..+-||+--|..|.||..+|+-.+. -|++ -||+.||+-+.+
T Consensus 169 ~arm~aqi~~l~eEmS~--r~l~reakl~~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~--~lq~l~Ee~l~a 244 (531)
T PF15450_consen 169 VARMQAQITKLGEEMSL--RFLKREAKLCSFLQKSFLALEKRMKAQESSRLRTERSLREELESRWQ--KLQELTEERLRA 244 (531)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 57888999999999997 3443333333334456788999999999999999987643 2332 366777776666
Q ss_pred HH
Q 041508 716 LA 717 (854)
Q Consensus 716 ~~ 717 (854)
|.
T Consensus 245 l~ 246 (531)
T PF15450_consen 245 LQ 246 (531)
T ss_pred HH
Confidence 53
No 145
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=31.91 E-value=2.9e+02 Score=30.15 Aligned_cols=73 Identities=25% Similarity=0.294 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHH--------hHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHH
Q 041508 660 LADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAA--------QRYAAQVLQEK--YEEAIASLAEMEKRVVMAESM 729 (854)
Q Consensus 660 ~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 729 (854)
|.||=-+-.|.+++|++ .=+|.+|||++||=|--+. +-.|.+++-|- .+.+-..|.-.=....|-|.-
T Consensus 89 Lkdk~~rs~Ad~eNlr~--R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee~~~~d~~~~L~~l~eGl~mte~q 166 (236)
T KOG3003|consen 89 LKDKYLRSLAECENLRD--RTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEESEKEDQKKDLKDLFEGLSMTEAQ 166 (236)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcccccchHHHHHHhHHHHHHHH
Confidence 45666666778888865 4578899999998764333 33444444443 233333444444455565555
Q ss_pred HHHHh
Q 041508 730 LEATL 734 (854)
Q Consensus 730 ~~~~~ 734 (854)
|.-|+
T Consensus 167 l~~vf 171 (236)
T KOG3003|consen 167 LKEVF 171 (236)
T ss_pred HHHHH
Confidence 55544
No 146
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=31.86 E-value=7e+02 Score=27.93 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 041508 606 KVELCRLLEEKR 617 (854)
Q Consensus 606 k~El~~ll~e~r 617 (854)
+.||.+.-+|-.
T Consensus 333 kqeleqmaeeek 344 (445)
T KOG2891|consen 333 KQELEQMAEEEK 344 (445)
T ss_pred HHHHHHHHHHHH
Confidence 345665555433
No 147
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.83 E-value=5.7e+02 Score=26.06 Aligned_cols=59 Identities=27% Similarity=0.389 Sum_probs=27.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSEL 656 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~ 656 (854)
..++.++..+..|+.++-+.........+.++..+.... .......+++..++..+..+
T Consensus 84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~ 142 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR--ELLKSVEERLDSLDESIKEL 142 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666555555554444444444443322 22334444444444444443
No 148
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.71 E-value=1e+03 Score=29.11 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHhccCC
Q 041508 479 KDAGDAVTLLQTLAGS 494 (854)
Q Consensus 479 ~D~~Eil~lLq~Lp~~ 494 (854)
.++.++..++..+..+
T Consensus 115 ~~~~dI~~aae~~g~K 130 (548)
T COG2268 115 DTFQDIATAAERFGGK 130 (548)
T ss_pred CCHHHHHHHHHHhccc
Confidence 4555555555554433
No 149
>PRK04863 mukB cell division protein MukB; Provisional
Probab=31.40 E-value=1.6e+03 Score=31.08 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHH
Q 041508 706 QEKYEEAIASLAEMEKRVVMA 726 (854)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~ 726 (854)
+...+.--+.+++++....-.
T Consensus 441 e~~LenF~aklee~e~qL~el 461 (1486)
T PRK04863 441 EDWLEEFQAKEQEATEELLSL 461 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444443333
No 150
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.22 E-value=6.5e+02 Score=26.51 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=26.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRI 659 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~ 659 (854)
..|+.++.. |-.+-.+....+-..+.++..+.+. .....++..++..||+.+.+|++.
T Consensus 89 ~~l~~RL~k----LL~lk~~~~~~~e~~k~le~~~~~~--~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 89 KFLRSRLNK----LLSLKDDQEKLLEERKKLEKKIEEK--EAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHH
Confidence 566555433 2222233333333334444444333 223445555666666666665554
No 151
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=30.97 E-value=6.6e+02 Score=27.46 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=56.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQ-----DNRRQLSARVEQLEQEVSELRRILADKQEQESA 669 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~-----d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~ 669 (854)
|.+.+.+-.....++.+....-..+..+.-.|+..+...++. +.+.....+.+.....|.+|.+.+.+.+..|..
T Consensus 130 VneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ 209 (239)
T PF05276_consen 130 VNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSE 209 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655555555555555555555555555555433322 144778888888999999999999999999999
Q ss_pred HHHHHHHH
Q 041508 670 MIQVLMRV 677 (854)
Q Consensus 670 ~~~~~~r~ 677 (854)
-|.+|=.+
T Consensus 210 ALrnLE~I 217 (239)
T PF05276_consen 210 ALRNLEQI 217 (239)
T ss_pred HHHHHHHH
Confidence 99999444
No 152
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=30.93 E-value=2.8e+02 Score=32.92 Aligned_cols=39 Identities=33% Similarity=0.517 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhhh---------hHHHhHHHHHHHHHHHHHH
Q 041508 665 EQESAMIQVLMRVEQEQKVTEDARRFAEQ---------DAAAQRYAAQVLQEKYEEA 712 (854)
Q Consensus 665 ~~~~~~~~~~~r~~q~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 712 (854)
+-|+.|.|. -+.|||+-||. +-..+-||...+.-...+|
T Consensus 363 qAEA~MFQ~---------kAdEARrEAE~LqrI~~aK~~k~EEEYas~~~kl~l~ea 410 (446)
T PF07227_consen 363 QAEAKMFQL---------KADEARREAEGLQRIALAKSEKIEEEYASRYLKLRLNEA 410 (446)
T ss_pred HHHHHHHHH---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHH
Confidence 346666662 36667766663 3344556665555444444
No 153
>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]
Probab=30.57 E-value=33 Score=43.65 Aligned_cols=118 Identities=25% Similarity=0.271 Sum_probs=79.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----HHHHHHHH---HHHHHHHHHHHH-HHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQD-----NRRQLSAR---VEQLEQEVSELR-RILADKQE 665 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d-----~r~~l~~~---~~~le~e~~~~~-~~~~~~~~ 665 (854)
++.|+-++...+.+...++++-+++.+|-|++|+.|.-..-.+ --..|||+ +++-|.|++++| +++-|-||
T Consensus 163 i~~lE~el~~~r~~c~~l~~~a~~~~rr~Ee~e~ql~~a~~~na~lvEen~rlsa~~~w~~~vE~enae~rghl~~~~qe 242 (1335)
T KOG3632|consen 163 IKNLETELNFFRTSCINLLEVAESNFRRFEEEESQLLTAPCPNALLVEENLRLSALVSWSSPVESENAESRGHLCVDGQE 242 (1335)
T ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhccCcchhhhhhccccceeecccchhhhhhhhhhheeecccee
Confidence 5778888888999999999999999999999999886443221 12345554 356677888877 34456666
Q ss_pred HHHHH------HHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHH
Q 041508 666 QESAM------IQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEA 712 (854)
Q Consensus 666 ~~~~~------~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (854)
+-.+- =-+++-.||-.++.-++--.--|++-.+--|.++||+|.+|-
T Consensus 243 Rd~~~~~~~~~~~~~l~~eq~L~~mae~a~rrqqlq~eh~qal~~l~~kqqEV 295 (1335)
T KOG3632|consen 243 RDIVPGSYKCVEDIPLESEQNLSVMAETAHRRQQLQCEHIQALNELQVKQQEV 295 (1335)
T ss_pred eccccccccccccchhhHHHHHHHHHHHhhhccchhhhhHHHhhhcccCHHHh
Confidence 54432 112344455555544444444577777888889999988764
No 154
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=30.19 E-value=8.6e+02 Score=28.16 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 041508 640 RQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTE 685 (854)
Q Consensus 640 ~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~ 685 (854)
..|...|..|..-+..|++-|..-+.....+....+++|.+-.+-.
T Consensus 320 ~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~ 365 (384)
T PF03148_consen 320 YGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKN 365 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577788888888888888888888888888888888887765543
No 155
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=29.95 E-value=3.5e+02 Score=28.88 Aligned_cols=40 Identities=33% Similarity=0.476 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 625 ELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQ 666 (854)
Q Consensus 625 ele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~ 666 (854)
.|+....+.|.. -.++...+..|++||.+|++-....+++
T Consensus 179 ~Le~~W~~~v~k--n~eie~a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 179 YLEQRWKELVSK--NLEIEVACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466666666655 5677778888888888877765555443
No 156
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.81 E-value=3.4e+02 Score=23.32 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041508 641 QLSARVEQLEQEVSELRRIL 660 (854)
Q Consensus 641 ~l~~~~~~le~e~~~~~~~~ 660 (854)
+|++||.+|.++|.-++-..
T Consensus 14 ~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 14 TLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777665433
No 157
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=29.63 E-value=3.6e+02 Score=33.50 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 597 DLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRR 658 (854)
Q Consensus 597 ~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~ 658 (854)
.++.|+..+..||.++..+.......+.. +. ...++.-+++++|+..||.++++.+.
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~----~~-~~~~~~~~~~~~~l~~le~~l~~~~~ 399 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRV----KT-EQAQASVHQLDSQFAQLDGKLADAQS 399 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777666653333322211 11 12445668889999999998888443
No 158
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=29.20 E-value=8.3e+02 Score=27.13 Aligned_cols=39 Identities=33% Similarity=0.292 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 641 QLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQ 679 (854)
Q Consensus 641 ~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q 679 (854)
|+-|.-++|-.-|.+|.|+-.|-+.-+.|.+=-|--+||
T Consensus 102 qt~aikeql~kyiReLEQaNDdLErakRati~sleDfeq 140 (333)
T KOG1853|consen 102 QTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQ 140 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHH
Confidence 344444444444444444444444444444433333333
No 159
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=29.08 E-value=1.5e+03 Score=30.28 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 639 RRQLSARVEQLEQEVSELRRILADKQEQESAM 670 (854)
Q Consensus 639 r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~ 670 (854)
|.-+..+++++++++..|+..+..|+-+++.+
T Consensus 210 ~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~ 241 (1109)
T PRK10929 210 SELAKKRSQQLDAYLQALRNQLNSQRQREAER 241 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456688888888888888888888777665
No 160
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=28.15 E-value=3.4e+02 Score=23.65 Aligned_cols=30 Identities=40% Similarity=0.657 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 626 LETALMEMVKQDNRRQLSARVEQLEQEVSELR 657 (854)
Q Consensus 626 le~a~~e~~~~d~r~~l~~~~~~le~e~~~~~ 657 (854)
++..|.+.-++ .+.|.++|+.|+.++.++|
T Consensus 30 ~e~kLqeaE~r--n~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 30 FESKLQEAEKR--NRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 34444444444 6788888888888888765
No 161
>KOG3080 consensus Nucleolar protein-like/EBNA1-binding protein [RNA processing and modification]
Probab=28.12 E-value=4.5e+02 Score=29.73 Aligned_cols=110 Identities=24% Similarity=0.402 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccC-----CCC
Q 041508 672 QVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESMLEATLQYQSGQIKA-----QPS 746 (854)
Q Consensus 672 ~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 746 (854)
+.||-..+-++..|.||+.-|+ .+|+.+|--++ |++|.-===-|||+..-|.-|-... ..+
T Consensus 187 ~~Li~eq~~ke~sE~ark~Rel----KKfgKqVQ~~~----------l~~Rq~EKk~~lekiKk~kk~~~~~~lDf~e~~ 252 (328)
T KOG3080|consen 187 QRLIKEQTAKERSEEARKQREL----KKFGKQVQKAK----------LQERQREKKETLEKIKKLKKGRTEDELDFLEGN 252 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhccccccchhhhcC
Confidence 3455555556667777766554 45666553322 3333332235889999999887433 122
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccccCCCC-CCCCCCCCCC
Q 041508 747 -PRSPHPDSSARSNQEPTQEVPGRKISLLARPFGLGWRDRNKGK-ANSTDGPADV 799 (854)
Q Consensus 747 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 799 (854)
+=+......+++.+...+..|.|+.- .--||.|=. .||. .|+.+.+++.
T Consensus 253 ~~~a~~~k~G~rg~~~R~~pn~KR~~K--n~KfGfGGk--Kk~sK~Nt~eS~ad~ 303 (328)
T KOG3080|consen 253 PAGADGDKKGGRGTKMRKQPNPKRQKK--NEKFGFGGK--KKGSKRNTAESSADV 303 (328)
T ss_pred cccccccccccccccccCCCchhhhhh--hcccCCCcc--cccccccchhhhhcc
Confidence 22222333455555445555555332 223777744 4454 5555544443
No 162
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.56 E-value=8.9e+02 Score=30.04 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=17.3
Q ss_pred HHHHHHhhhhcchHHHHHHHHHhhhhhhcccc
Q 041508 502 VLTACMGYQNHRPAVVAAVEERSKGLLARKDS 533 (854)
Q Consensus 502 I~~A~~~~~~~r~~V~~~le~r~k~~~~~kd~ 533 (854)
+.-|+..|+.+.+ .+..++........|.|.
T Consensus 347 LAAA~kAY~~yk~-kl~~vEr~~~~~g~~~d~ 377 (652)
T COG2433 347 LAAAYKAYLAYKP-KLEKVERKLPELGIWKDV 377 (652)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhcccccchhhH
Confidence 3344555665555 445566666666666444
No 163
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.45 E-value=9.1e+02 Score=27.27 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041508 642 LSARVEQLEQEVSELRRILADK 663 (854)
Q Consensus 642 l~~~~~~le~e~~~~~~~~~~~ 663 (854)
+..+++.|++|..++.+-|..-
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~L 69 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEEL 69 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333
No 164
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.73 E-value=1.4e+03 Score=29.09 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 041508 642 LSARVEQLEQ 651 (854)
Q Consensus 642 l~~~~~~le~ 651 (854)
|..+.+.|++
T Consensus 553 l~~~~~~l~~ 562 (782)
T PRK00409 553 LEEKKEKLQE 562 (782)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 165
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.71 E-value=7e+02 Score=27.33 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=15.6
Q ss_pred HHHHH-H-HHHHHHHHHHHHHHHhh
Q 041508 700 YAAQV-L-QEKYEEAIASLAEMEKR 722 (854)
Q Consensus 700 ~~~~~-~-~~~~~~~~~~~~~~~~~ 722 (854)
+|..+ + +.+|++|+..+..+=++
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~ 172 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKK 172 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44454 3 35799999998777654
No 166
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=26.61 E-value=1.1e+03 Score=27.75 Aligned_cols=133 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELR-------------RILAD 662 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~-------------~~~~~ 662 (854)
+..+++....+.++.+.+.+.++-...+-.|.+.+...+.+ |++|.++..+|-.+-.+|+ ++-+.
T Consensus 119 ~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~q--r~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~ 196 (499)
T COG4372 119 EAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQ--RRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSA 196 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q 041508 663 KQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQV------LQEKYEEAIASLAEMEKRVVMAESMLEATLQY 736 (854)
Q Consensus 663 ~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (854)
+-||+...|+. +-+.+----+.+|-..||+|--+... ++.|--++-+--.++-+|.--+-- ||-..-|
T Consensus 197 ~ieQ~~~~la~-----r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~-lEt~q~~ 270 (499)
T COG4372 197 QIEQEAQNLAT-----RANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQR-LETAQAR 270 (499)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHH
No 167
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=26.59 E-value=1.8e+02 Score=32.53 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=29.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 621 LRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQE 665 (854)
Q Consensus 621 lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~ 665 (854)
++-|+|...+-..-+. =.+|..++..||+|+..|||++-++..
T Consensus 248 ae~E~l~ge~~~Le~r--N~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKR--NEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555322222 357888999999999999999987754
No 168
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.58 E-value=3.4e+02 Score=27.42 Aligned_cols=35 Identities=31% Similarity=0.296 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSAL--LRAEELETAL 630 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~--lraeele~a~ 630 (854)
.+|++|+..++.+...|-.+...-. +..++|...+
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i 118 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASLSSEPTNEELREEI 118 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 6677777777766666665555444 4445554444
No 169
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=25.83 E-value=1.5e+03 Score=29.15 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 041508 641 QLSARVEQLEQEV 653 (854)
Q Consensus 641 ~l~~~~~~le~e~ 653 (854)
||.++.+-|..|+
T Consensus 274 qlk~kns~L~~El 286 (1265)
T KOG0976|consen 274 QLKAKNSVLGDEL 286 (1265)
T ss_pred HHHHHHHHHhhhh
Confidence 3334444443333
No 170
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.29 E-value=2.8e+02 Score=30.59 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 041508 698 QRYAAQVLQEKYEEAIASLAEMEK 721 (854)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~ 721 (854)
++--++-||.|-++.+.++|+|.+
T Consensus 272 Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 272 HKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455577789999999999999984
No 171
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=25.11 E-value=1.8e+02 Score=34.99 Aligned_cols=41 Identities=27% Similarity=0.250 Sum_probs=31.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHH-----------------HHHHhHHHHHHHHHHHH
Q 041508 594 SVPDLQEQVVWLKVELCRLLEEKR-----------------SALLRAEELETALMEMV 634 (854)
Q Consensus 594 ~~~~l~eq~~~lk~El~~ll~e~r-----------------~~~lraeele~a~~e~~ 634 (854)
+.+.|+-|.-.+|.|..+|..||- .+|.+++|+.+-|.++.
T Consensus 31 EfqflqaqyhslkleceKlA~EKteMqRhYvmYyEmSygLniemhKq~EI~KRLn~i~ 88 (705)
T KOG0639|consen 31 EFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTIC 88 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhheeeeeeeccccchhhHHHHHHHHHHHHHH
Confidence 369999999999999999998873 45566666666665554
No 172
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.49 E-value=1.7e+03 Score=29.18 Aligned_cols=80 Identities=15% Similarity=0.241 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHH
Q 041508 635 KQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIA 714 (854)
Q Consensus 635 ~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (854)
.++-|.++.++...|+.|+.+-|+...+-|+---.-++.|--..---..+---...||--|..=---+..|+|+.|+...
T Consensus 267 lqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~delet 346 (1243)
T KOG0971|consen 267 LQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELET 346 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888998888877766665554333333332221111111111223444444433444555555555433
No 173
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.39 E-value=7.5e+02 Score=27.00 Aligned_cols=71 Identities=28% Similarity=0.312 Sum_probs=42.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQD-----NRRQLSARVEQLEQEVSELRRILADKQEQ 666 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d-----~r~~l~~~~~~le~e~~~~~~~~~~~~~~ 666 (854)
-++.+....+|--|..+.+++..-+-+-++|+..+.+....= --.+|..+...|..||..|++-+++-..-
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 355555555664466666666666666677776664433111 12456667777777777777777665443
No 174
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.36 E-value=8.5e+02 Score=25.67 Aligned_cols=138 Identities=24% Similarity=0.339 Sum_probs=86.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLM 675 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~ 675 (854)
..|+.++..+..++..+..|.+.-.--.-=.+.|+... .+.-..|+--+.+-..||.-|+.-|...++++.++=+.|=
T Consensus 15 ~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~--e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk 92 (194)
T PF15619_consen 15 KELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKY--EDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLK 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777765442222344555322 2344566666677777888888888888888877766665
Q ss_pred HHHHHhhhhHH----------HHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Q 041508 676 RVEQEQKVTED----------ARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESMLEATLQYQ 737 (854)
Q Consensus 676 r~~q~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (854)
..+.+-.=+.| .+-.+|+|.-.++- ..++.+-+++-.-++.||+.+.++....-.-+.-.
T Consensus 93 ~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL--~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e 162 (194)
T PF15619_consen 93 DKDEELLKTKDELKHLKKLSEDKNLAEREELQRKL--SQLEQKLQEKEKKIQELEKQLELENKSFRRQLASE 162 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444333333 24456666665553 34566666667777778888877777766555443
No 175
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=24.30 E-value=4.8e+02 Score=31.58 Aligned_cols=69 Identities=29% Similarity=0.358 Sum_probs=49.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQE 665 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~ 665 (854)
+...+|++..|-.+|..+-++++-..+.-|+|..-|..+. |.-+|+.|..+.++-.-+|.-+.|.+-||
T Consensus 228 l~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~--da~~ql~aE~~EleDkyAE~m~~~~Eaee 296 (596)
T KOG4360|consen 228 LSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK--DAQRQLTAELEELEDKYAECMQMLHEAEE 296 (596)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777788888888886655 45677777777777666666666665554
No 176
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=23.99 E-value=6.2e+02 Score=23.90 Aligned_cols=73 Identities=26% Similarity=0.263 Sum_probs=47.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETA-------------LMEMVKQDNRRQLSARVEQLEQEVSELRRILAD 662 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a-------------~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~ 662 (854)
+.++.++..+...+..+-.+++...+--++|+.. |++.=+.+....|..+++.++..+..|.+-+..
T Consensus 13 q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~ 92 (110)
T TIGR02338 13 QQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEER 92 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888877777776542 333335555666666666666666666555555
Q ss_pred HHHHHH
Q 041508 663 KQEQES 668 (854)
Q Consensus 663 ~~~~~~ 668 (854)
.+++-.
T Consensus 93 l~~~l~ 98 (110)
T TIGR02338 93 LREQLK 98 (110)
T ss_pred HHHHHH
Confidence 544433
No 177
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.85 E-value=6.6e+02 Score=31.78 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 639 RRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRV 677 (854)
Q Consensus 639 r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~ 677 (854)
+..|+++.+.|.....+ ..|+||.=..-++.||+.
T Consensus 588 ~~~l~~~ae~LaeR~e~----a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 588 RKSLRESAEKLAERYEE----AKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 45555555555544333 335555555545544443
No 178
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.77 E-value=9.3e+02 Score=25.91 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 041508 645 RVEQLEQEVSE 655 (854)
Q Consensus 645 ~~~~le~e~~~ 655 (854)
++++|++++.+
T Consensus 85 el~~L~~qi~~ 95 (251)
T PF11932_consen 85 ELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 179
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=23.31 E-value=1.7e+03 Score=28.69 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------H--HHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQD-------N--RRQLSARVEQL--EQEVSELRRILADKQ 664 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d-------~--r~~l~~~~~~l--e~e~~~~~~~~~~~~ 664 (854)
+....++...-.+|..|+..+..-++..+++.+.+--.|+.- + -.|..+..+.| -+|++|..+.-.+.+
T Consensus 864 ~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER~rrEae 943 (1259)
T KOG0163|consen 864 EEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAERKRREAE 943 (1259)
T ss_pred HHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344445555556677777777765566666555553333211 1 01122222222 236666666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 041508 665 EQESAMIQVLMRVEQE 680 (854)
Q Consensus 665 ~~~~~~~~~~~r~~q~ 680 (854)
|++.+.-..=-|+++|
T Consensus 944 ek~rre~ee~k~~k~e 959 (1259)
T KOG0163|consen 944 EKRRREEEEKKRAKAE 959 (1259)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666555555555544
No 180
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.78 E-value=1.1e+03 Score=26.57 Aligned_cols=99 Identities=22% Similarity=0.262 Sum_probs=50.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSA-LLRAEELETALMEMVKQDNR-RQLSARVEQLEQEVSELRRILADKQEQESAMIQ 672 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~-~lraeele~a~~e~~~~d~r-~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~ 672 (854)
++.|.+....|+.|+.+|-...... ..-+++|..+-.++..++.. .....+++.++.++.++...+.+..++-.....
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~ 253 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT 253 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666544433331 12334444444222222221 223346667777777777777666655544444
Q ss_pred HHHHHHHHhhhhHHHHhhhhhhHH
Q 041508 673 VLMRVEQEQKVTEDARRFAEQDAA 696 (854)
Q Consensus 673 ~~~r~~q~~~~~~~~~~~~~~~~~ 696 (854)
.+ ..-+++-+.-|.+.-.++.
T Consensus 254 ~I---~~ae~~~~~~r~~t~~Ei~ 274 (312)
T smart00787 254 EI---AEAEKKLEQCRGFTFKEIE 274 (312)
T ss_pred HH---HHHHHHHHhcCCCCHHHHH
Confidence 33 3444566666666654443
No 181
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=22.64 E-value=8.7e+02 Score=30.28 Aligned_cols=57 Identities=39% Similarity=0.398 Sum_probs=33.9
Q ss_pred ccHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLK---VELCRLLEEKRSALLRAEELETALMEMVKQD--NRRQLSARVEQLEQEVSELRRI 659 (854)
Q Consensus 596 ~~l~eq~~~lk---~El~~ll~e~r~~~lraeele~a~~e~~~~d--~r~~l~~~~~~le~e~~~~~~~ 659 (854)
.-|-+||.... .+|.-.++++|..+-.+|| |++|+ .|-.|.+|-=-|=.||++|+=-
T Consensus 128 svLteqVeaQgEKIrDLE~cie~kr~kLnatEE-------mLQqellsrtsLETqKlDLmaevSeLKLk 189 (861)
T KOG1899|consen 128 SVLTEQVEAQGEKIRDLETCIEEKRNKLNATEE-------MLQQELLSRTSLETQKLDLMAEVSELKLK 189 (861)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHH-------HHHHHHHhhhhHHHHHhHHHHHHHHhHHH
Confidence 44556655433 2667778888888866665 33333 3455555555566677776543
No 182
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=22.26 E-value=2.4e+03 Score=30.22 Aligned_cols=43 Identities=28% Similarity=0.325 Sum_probs=19.8
Q ss_pred HhhhhhhHHHhHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHH
Q 041508 688 RRFAEQDAAAQRYAAQV--LQEKYEEAIASLAEMEKRVVMAESML 730 (854)
Q Consensus 688 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (854)
+...|.+-+..++..++ +|+.-+++...-.+++...-+.|+=|
T Consensus 1034 ~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El 1078 (1930)
T KOG0161|consen 1034 RIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESEL 1078 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454444444433 34444444444455554444444433
No 183
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=22.19 E-value=1.2e+03 Score=30.80 Aligned_cols=63 Identities=29% Similarity=0.375 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDN------RRQLSARVEQLEQEVSELRR 658 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~------r~~l~~~~~~le~e~~~~~~ 658 (854)
.++..+...++.++....+.+|...-+-+.++..+.+.-++.+ +.+...|.++|++||..++-
T Consensus 347 ~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~ 415 (1074)
T KOG0250|consen 347 DDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE 415 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777777777777777766666777777777666663 24555566666666666544
No 184
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=22.16 E-value=3.6e+02 Score=24.45 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=18.5
Q ss_pred cccHHHHHHHHHHHHHHH---HHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRL---LEEKRS 618 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~l---l~e~r~ 618 (854)
+..|+++...+++|+..| ++.+..
T Consensus 19 l~~LqDE~~hm~~e~~~L~~~~~~~d~ 45 (79)
T PF06657_consen 19 LKALQDEFGHMKMEHQELQDEYKQMDP 45 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 478899999999999888 544433
No 185
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.12 E-value=1.6e+03 Score=28.69 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041508 604 WLKVELCRLLEEKRSAL 620 (854)
Q Consensus 604 ~lk~El~~ll~e~r~~~ 620 (854)
..+.++.+++++.....
T Consensus 508 ~~~~~~~~li~~L~~~~ 524 (771)
T TIGR01069 508 EFKEEINVLIEKLSALE 524 (771)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 186
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.93 E-value=1.5e+03 Score=27.60 Aligned_cols=127 Identities=18% Similarity=0.208 Sum_probs=60.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRI--LADKQEQESAMIQV 673 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~--~~~~~~~~~~~~~~ 673 (854)
...++.+..+...|-.|-.-...+...-...+..... ..+.-.++......|..|+.+|++- |++..-...+-++.
T Consensus 278 ~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~--l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lek 355 (569)
T PRK04778 278 DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDT--LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEK 355 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHH
Confidence 4555555555555555555555555433333333322 1222344555666666777776665 22332222222221
Q ss_pred -HHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 041508 674 -LMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKRVVMAESMLE 731 (854)
Q Consensus 674 -~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (854)
|-.++...+ ..+...+.+.=+...+++.|++....|.++++.-+....+|.
T Consensus 356 eL~~Le~~~~-------~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~ 407 (569)
T PRK04778 356 QLESLEKQYD-------EITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQ 407 (569)
T ss_pred HHHHHHHHHH-------HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 122333333444556677777777766666665554444443
No 187
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=21.90 E-value=1.1e+03 Score=25.94 Aligned_cols=112 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 041508 593 DSVPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSA-------RVEQLEQEVSELRRILADKQE 665 (854)
Q Consensus 593 ~~~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~-------~~~~le~e~~~~~~~~~~~~~ 665 (854)
+.+.+++.....++.+..++-.+++....|-+..+.++.....++-.+.|.- +...|+.|+++|...+...+.
T Consensus 45 ~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~ 124 (239)
T COG1579 45 KALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHH
Q 041508 666 QESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQV 704 (854)
Q Consensus 666 ~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (854)
+-...-..+.++|..---.+.+=..+.+-+-.+..+...
T Consensus 125 ~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~ 163 (239)
T COG1579 125 EIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSS 163 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 188
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=21.77 E-value=1.4e+03 Score=27.27 Aligned_cols=65 Identities=23% Similarity=0.307 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHH--HHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHH
Q 041508 645 RVEQLEQEVSELRRILADKQEQ-ESA-------MIQVLMRV--EQEQKVTEDARRFAEQDAAAQRYAAQVLQEKY 709 (854)
Q Consensus 645 ~~~~le~e~~~~~~~~~~~~~~-~~~-------~~~~~~r~--~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (854)
.++++.+|+..||-+|..-+.. |.. -||.+|++ |-|-+.-+--|..||..-+.-+-+|.-|+.|-
T Consensus 303 e~e~~rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKr 377 (575)
T KOG4403|consen 303 ENETSRKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKR 377 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 4445556777777777544332 222 47888776 44455556778888887777777787777764
No 189
>PF15463 ECM11: Extracellular mutant protein 11
Probab=21.76 E-value=4.7e+02 Score=25.91 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 636 QDNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVL 674 (854)
Q Consensus 636 ~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~ 674 (854)
.++|+.++..++.+|.||.+.-.+|..+.++=.+.|..|
T Consensus 93 ~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~m 131 (139)
T PF15463_consen 93 KEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKM 131 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999998888888888877777766
No 190
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=21.74 E-value=1.6e+03 Score=27.85 Aligned_cols=111 Identities=23% Similarity=0.299 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHH--HHHHHHHHHH------------------HHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSALLRAEE------LETALMEMV--KQDNRRQLSA------------------RVEQ 648 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~lraee------le~a~~e~~--~~d~r~~l~~------------------~~~~ 648 (854)
...++.++..++.++.++.+++.......++ +...+++++ ...|-++|++ ...-
T Consensus 344 i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~p 423 (594)
T PF05667_consen 344 IEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAP 423 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 041508 649 LEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEKR 722 (854)
Q Consensus 649 le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (854)
|..|+.+|+...+++...-...++.+=.++++-+- ....++.|.|..-...+++|+.
T Consensus 424 L~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~-----------------~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 424 LIEEYRRLKEKASNRESESKQKLQEIKELREEIKE-----------------IEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHhC
No 191
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=21.74 E-value=6.4e+02 Score=28.37 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=14.4
Q ss_pred HHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHH
Q 041508 686 DARRFAEQDAAAQRYAAQVLQEKYEEAIASLA 717 (854)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (854)
+...-..+--||..||-..|-.--..+...|.
T Consensus 202 ~~~~~~~~Ki~Ar~~a~~yl~~l~~~v~~~L~ 233 (291)
T PF06098_consen 202 EKEKELREKIAARAFAQQYLSDLVPSVLDSLE 233 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444555444444444444443
No 192
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=21.50 E-value=1.2e+03 Score=30.81 Aligned_cols=7 Identities=43% Similarity=0.501 Sum_probs=3.0
Q ss_pred HHHHHhh
Q 041508 716 LAEMEKR 722 (854)
Q Consensus 716 ~~~~~~~ 722 (854)
+..||+.
T Consensus 530 ~~~~~~~ 536 (1021)
T PTZ00266 530 LKGMENG 536 (1021)
T ss_pred hhhcccc
Confidence 4444443
No 193
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.37 E-value=2.9e+02 Score=30.47 Aligned_cols=64 Identities=25% Similarity=0.378 Sum_probs=38.1
Q ss_pred cccHHHHHHHHHHHHHH---HHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCR---LLEEKRSAL--LRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRR 658 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~---ll~e~r~~~--lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~ 658 (854)
.+.|+|+++.|+.=|++ ++=++...+ |+|+.-....+|......-.||++|.+.+-.+++.|+.
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68899999988865543 233333333 66752222344555555456677777666666666654
No 194
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=21.04 E-value=1.8e+03 Score=28.47 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhhHHHHh
Q 041508 640 RQLSARVEQLEQEVSELRRILADKQEQESAMI------QVLMRVEQEQKVTEDARR 689 (854)
Q Consensus 640 ~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~------~~~~r~~q~~~~~~~~~~ 689 (854)
+++....+.+..-..++-+.|.-|+.|-.+.+ |.+|.+|...+-+|+-|+
T Consensus 892 ~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER~rrEaeek~r 947 (1259)
T KOG0163|consen 892 REMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAERKRREAEEKRR 947 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 44555555555555556566655555554444 444555555555555444
No 195
>PRK11239 hypothetical protein; Provisional
Probab=20.99 E-value=1.2e+02 Score=32.49 Aligned_cols=27 Identities=44% Similarity=0.530 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 640 RQLSARVEQLEQEVSELRRILADKQEQ 666 (854)
Q Consensus 640 ~~l~~~~~~le~e~~~~~~~~~~~~~~ 666 (854)
..|.++|..||+||++|+..+..-..|
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778999999999998887765543
No 196
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=20.93 E-value=1.5e+03 Score=27.33 Aligned_cols=143 Identities=22% Similarity=0.197 Sum_probs=0.0
Q ss_pred hhHHhhhhcCCCCCCCc--ccHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 579 ADEVLISLTGDGEIDSV--PDLQEQVVWLKVELCRLLEEKRSAL-LRAEELETALMEMVKQDNRRQLSARVEQLEQEVSE 655 (854)
Q Consensus 579 ~~~~~~~~~~~~e~~~~--~~l~eq~~~lk~El~~ll~e~r~~~-lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~ 655 (854)
+...+.++......... .++...+......+..|-.++-... ...+.++.+|.+.-..........-..++++.+.+
T Consensus 228 l~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~ 307 (582)
T PF09731_consen 228 LVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQREELLSKLREELEQELEEKRAE 307 (582)
T ss_pred HHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 041508 656 LRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEMEK 721 (854)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (854)
+.+-+..+-+++...|+.-+.-+-++.+..-+....+.=.-+-+-...-|+.+|++-+..--.-|+
T Consensus 308 ~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er 373 (582)
T PF09731_consen 308 LEEELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQER 373 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 197
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.75 E-value=1.1e+03 Score=30.21 Aligned_cols=7 Identities=29% Similarity=0.207 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 041508 712 AIASLAE 718 (854)
Q Consensus 712 ~~~~~~~ 718 (854)
|...|.+
T Consensus 612 ~~~~l~~ 618 (782)
T PRK00409 612 ARKRLNK 618 (782)
T ss_pred HHHHHHH
Confidence 3333333
No 198
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=20.70 E-value=1.2e+03 Score=26.18 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=10.0
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEE 615 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e 615 (854)
..++.++..++.++.++..+
T Consensus 77 ~~~~~~l~~l~~~~~~l~a~ 96 (423)
T TIGR01843 77 TDVEADAAELESQVLRLEAE 96 (423)
T ss_pred chhhhHHHHHHHHHHHHHHH
Confidence 34455555555555554433
No 199
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=20.54 E-value=1e+03 Score=25.27 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=16.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSALLRAEELETAL 630 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~ 630 (854)
++.|.+++..|+..+..+.+.-..-....++|...+
T Consensus 17 n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~ 52 (193)
T PF14662_consen 17 NQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQL 52 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666555555444333333323333443333
No 200
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=20.16 E-value=1.5e+03 Score=27.11 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMV--KQDNRRQLSARVEQLEQEVSELRRILADK 663 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~--~~d~r~~l~~~~~~le~e~~~~~~~~~~~ 663 (854)
..|..|..-++.+|..+-.+.+....+-+++...-.... ....++...-+++.|...+.+++.++...
T Consensus 105 ~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~ 174 (511)
T PF09787_consen 105 DSLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKRE 174 (511)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 345667777777777777776665555555511100111 22233444445577777777776666544
No 201
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=20.15 E-value=2.3e+03 Score=29.12 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=15.6
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhcc
Q 041508 715 SLAEMEKRVVMAESMLEATLQYQS 738 (854)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~ 738 (854)
...+++.+..+++.-.++.-++..
T Consensus 471 ~~~~~~e~~~~~~~~~~~~~~~~~ 494 (1353)
T TIGR02680 471 EAEQAAARAELADEAVHREGARLA 494 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666777666666
No 202
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=20.11 E-value=1.6e+03 Score=27.22 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041508 598 LQEQVVWLKVELCRLLEEKRSAL 620 (854)
Q Consensus 598 l~eq~~~lk~El~~ll~e~r~~~ 620 (854)
.++++...+.|+.+.+++.+..+
T Consensus 56 aeeE~~~~R~Ele~el~~~e~rL 78 (514)
T TIGR03319 56 AKEEVHKLRAELERELKERRNEL 78 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555554444444
Done!