Query 041508
Match_columns 854
No_of_seqs 330 out of 1698
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:11:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qq8_A TBC1 domain family memb 100.0 7.3E-48 2.5E-52 421.0 23.0 287 234-526 37-330 (334)
2 3qye_A TBC1 domain family memb 100.0 2.8E-46 9.5E-51 406.8 22.1 246 233-508 47-307 (331)
3 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 4.5E-46 1.5E-50 402.1 21.2 243 235-508 23-274 (310)
4 2qfz_A TBC1 domain family memb 100.0 6.7E-46 2.3E-50 406.3 21.0 274 226-511 31-335 (345)
5 1fkm_A Protein (GYP1P), ORF YO 100.0 2.3E-44 7.8E-49 402.3 24.8 255 233-510 21-380 (396)
6 4hl4_A TBC1 domain family memb 100.0 9.3E-45 3.2E-49 389.2 18.1 256 227-514 26-291 (292)
7 3qwl_A TBC1 domain family memb 100.0 3.8E-34 1.3E-38 308.4 14.4 246 224-512 29-286 (294)
8 1c1g_A Tropomyosin; contractIl 89.4 18 0.00061 35.8 21.3 11 645-655 77-87 (284)
9 3vkg_A Dynein heavy chain, cyt 87.0 15 0.00051 51.0 19.7 16 703-718 2045-2060(3245)
10 3tnu_B Keratin, type II cytosk 85.7 14 0.00047 34.8 13.5 86 595-680 31-118 (129)
11 3vkg_A Dynein heavy chain, cyt 85.2 8.9 0.0003 53.1 16.2 84 642-728 1932-2042(3245)
12 3tnu_A Keratin, type I cytoske 84.4 12 0.0004 35.3 12.4 78 596-680 41-120 (131)
13 3iox_A AGI/II, PA; alpha helix 81.9 15 0.00051 42.0 13.8 66 637-712 2-67 (497)
14 3swk_A Vimentin; cytoskeleton, 79.2 10 0.00035 33.5 9.2 64 595-658 2-84 (86)
15 3oja_B Anopheles plasmodium-re 74.9 47 0.0016 37.9 15.9 17 705-721 563-579 (597)
16 2dfs_A Myosin-5A; myosin-V, in 74.0 30 0.001 43.4 14.7 22 641-662 1020-1041(1080)
17 2dfs_A Myosin-5A; myosin-V, in 72.4 22 0.00076 44.5 13.0 14 245-258 316-329 (1080)
18 3na7_A HP0958; flagellar bioge 71.8 97 0.0033 32.0 18.7 17 666-682 109-125 (256)
19 3ol1_A Vimentin; structural ge 71.5 41 0.0014 31.2 11.7 65 596-660 23-106 (119)
20 1i84_S Smooth muscle myosin he 66.9 9.7 0.00033 48.1 8.3 19 243-261 340-358 (1184)
21 1ci6_A Transcription factor AT 64.8 20 0.00069 29.7 7.2 40 621-662 23-62 (63)
22 1i84_S Smooth muscle myosin he 63.2 17 0.00058 45.9 9.5 19 643-661 919-937 (1184)
23 3i00_A HIP-I, huntingtin-inter 61.1 69 0.0024 30.0 10.9 45 601-657 16-60 (120)
24 1x79_B RAB GTPase binding effe 59.3 1.1E+02 0.0039 28.3 13.2 102 600-703 6-110 (112)
25 1gk4_A Vimentin; intermediate 55.6 1E+02 0.0035 26.7 11.1 42 639-680 28-69 (84)
26 3hnw_A Uncharacterized protein 54.1 38 0.0013 32.4 8.0 52 578-634 65-116 (138)
27 2i1j_A Moesin; FERM, coiled-co 54.0 12 0.00042 43.6 5.5 67 596-664 338-404 (575)
28 1hjb_A Ccaat/enhancer binding 52.4 86 0.0029 27.8 9.4 44 621-666 36-79 (87)
29 3mov_A Lamin-B1; LMNB1, B-type 49.6 1E+02 0.0035 27.6 9.6 42 639-680 39-80 (95)
30 3a7p_A Autophagy protein 16; c 49.0 1.4E+02 0.0049 29.0 11.1 60 596-657 71-130 (152)
31 1kd8_A GABH AIV, GCN4 acid bas 47.6 30 0.001 25.8 4.6 17 640-656 4-20 (36)
32 1deb_A APC protein, adenomatou 46.5 61 0.0021 25.9 6.6 38 641-678 7-50 (54)
33 1gk6_A Vimentin; intermediate 46.5 55 0.0019 26.7 6.7 40 641-680 4-43 (59)
34 2xv5_A Lamin-A/C; structural p 46.2 57 0.0019 28.0 7.1 42 639-680 7-48 (74)
35 1gu4_A CAAT/enhancer binding p 44.8 1E+02 0.0035 26.7 8.5 40 621-662 36-75 (78)
36 1x8y_A Lamin A/C; structural p 44.4 1.3E+02 0.0044 26.3 9.3 42 639-680 30-71 (86)
37 2eqb_B RAB guanine nucleotide 37.7 2.3E+02 0.0079 25.6 14.0 27 638-664 41-67 (97)
38 1t2k_D Cyclic-AMP-dependent tr 33.7 1.3E+02 0.0043 24.5 7.0 38 621-660 22-59 (61)
39 3ni0_A Bone marrow stromal ant 32.2 2.8E+02 0.0097 25.0 10.4 61 605-665 23-88 (99)
40 1kd8_B GABH BLL, GCN4 acid bas 32.0 74 0.0025 23.7 4.6 15 641-655 5-19 (36)
41 3s4r_A Vimentin; alpha-helix, 31.7 1.7E+02 0.006 25.9 8.2 33 578-615 13-45 (93)
42 2fxo_A Myosin heavy chain, car 31.7 3.2E+02 0.011 25.4 11.1 17 642-658 102-118 (129)
43 3syn_E ATP-binding protein YLX 31.2 30 0.001 22.8 2.2 17 707-723 4-20 (23)
44 3na7_A HP0958; flagellar bioge 29.7 4.7E+02 0.016 26.7 19.0 7 721-727 165-171 (256)
45 1jnm_A Proto-oncogene C-JUN; B 29.6 68 0.0023 26.2 4.8 38 621-660 22-59 (62)
46 2wq1_A General control protein 29.4 90 0.0031 22.9 4.6 15 641-655 4-18 (33)
47 3m48_A General control protein 26.2 57 0.0019 24.0 3.1 17 645-661 15-31 (33)
48 3c3f_A Alpha/beta peptide with 24.7 1.2E+02 0.0041 22.3 4.6 14 647-660 18-31 (34)
49 4h22_A Leucine-rich repeat fli 24.7 3.9E+02 0.013 24.4 9.1 25 596-620 5-29 (103)
50 1deq_A Fibrinogen (alpha chain 24.4 5.3E+02 0.018 28.6 11.8 78 640-720 63-140 (390)
51 1uo4_A General control protein 23.9 1.1E+02 0.0038 22.6 4.3 17 645-661 16-32 (34)
52 2zqm_A Prefoldin beta subunit 23.4 3.9E+02 0.013 23.6 11.3 71 596-666 16-99 (117)
53 3o0z_A RHO-associated protein 22.9 5.5E+02 0.019 25.3 16.8 28 639-666 57-84 (168)
54 3ghg_A Fibrinogen alpha chain; 22.9 2.1E+02 0.0073 33.0 8.6 21 700-720 169-189 (562)
55 1fxk_A Prefoldin; archaeal pro 22.3 3.9E+02 0.013 23.3 9.4 71 596-666 11-94 (107)
56 3c3g_A Alpha/beta peptide with 21.9 1.5E+02 0.0051 21.7 4.6 14 647-660 17-30 (33)
57 3cl3_D NF-kappa-B essential mo 21.9 2.5E+02 0.0085 26.6 7.5 72 640-717 33-107 (130)
58 2k48_A Nucleoprotein; viral pr 21.5 3E+02 0.01 25.2 7.6 22 644-665 82-103 (107)
59 2zxx_A Geminin; coiled-coil, c 21.4 2.9E+02 0.01 24.0 7.3 28 629-658 28-55 (79)
60 1go4_E MAD1 (mitotic arrest de 21.3 2.3E+02 0.0078 25.8 6.9 28 638-665 69-96 (100)
61 3m48_A General control protein 20.6 1.3E+02 0.0045 22.1 4.1 28 640-675 3-30 (33)
62 3mq7_A Bone marrow stromal ant 20.5 5.2E+02 0.018 24.1 11.3 60 604-664 29-91 (121)
No 1
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.3e-48 Score=421.01 Aligned_cols=287 Identities=24% Similarity=0.385 Sum_probs=235.2
Q ss_pred CHHHHHHHHhCCCCchhHHHHHHHHhcCccCCChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhhhhhh
Q 041508 234 WKEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQI 313 (854)
Q Consensus 234 ~~ekLk~Lir~GIP~~LR~~VW~lLLGi~~~~~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~~qI 313 (854)
..++|+.++++|||+.+|+.||++|+|+......+.|..++.+.......+........... . ...........++|
T Consensus 37 ~~~~lr~l~~~GIP~~lR~~vW~~llg~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d-~--~~~~~~~~~~~~~I 113 (334)
T 2qq8_A 37 CSRKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENED-A--GFSAADREASLELI 113 (334)
T ss_dssp CCHHHHHHHHTCCCHHHHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHC-------------------------CCHHHHH
T ss_pred ChHHHHHHHHCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhccccccCcccc-c--ccccccchhHHHHH
Confidence 34789999999999999999999999997666778898888765432211111100000000 0 00111224567999
Q ss_pred hhcCCcCCCCCCCCCh--hhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcCChHHHHHHHHHhhHhhh-cCCCCch
Q 041508 314 EKDLPRTFPGHPALDN--DGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDYF-DGYYSEE 390 (854)
Q Consensus 314 ekDV~RTfp~~~~F~e--~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~EedAFw~f~~Lm~~~l-~~yfs~~ 390 (854)
++||+||||++++|+. .++..|++||.+|+.+||++|||||||+||++||++++|++|||||+.||+++. .+||..+
T Consensus 114 ~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~aF~~~~~l~~~~~~~~~~~~~ 193 (334)
T 2qq8_A 114 KLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVD 193 (334)
T ss_dssp HHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHHHHHHHHHHTSHHHHHHHSSC
T ss_pred HHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhHHhccCCC
Confidence 9999999999999975 468999999999999999999999999999999999999999999999999874 5688888
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 041508 391 MIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALMEL 470 (854)
Q Consensus 391 ~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~LFrvaLAIL~~ 470 (854)
..++...+.+|+.||+.++|+||.||.+.|+.+.+|+++||+|||+++||++.++||||+||++|..+ +|++|+|||..
T Consensus 194 ~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~-l~~valaiL~~ 272 (334)
T 2qq8_A 194 HGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEF-LFRTALGILKL 272 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999999999999999999999999988 88999999999
Q ss_pred hhHHhhcCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhhhh----cchHHHHHHHHHhhh
Q 041508 471 YGPALVTTKDAGDAVTLLQTLAGSTFDSSQLVLTACMGYQN----HRPAVVAAVEERSKG 526 (854)
Q Consensus 471 ~re~LL~~~D~~Eil~lLq~Lp~~~~D~~~LI~~A~~~~~~----~r~~V~~~le~r~k~ 526 (854)
+++.|+++ |+++++.+|+++|.. +|++.|+..|+..... +.+.++..++++.|+
T Consensus 273 ~~~~Ll~~-d~~~il~~L~~lp~~-~d~~~l~~~a~~l~~~~~~k~~~~~~~~~~~~~~~ 330 (334)
T 2qq8_A 273 FEDILTKM-DFIHMAQFLTRLPED-LPAEELFASIATIQMQSRNKKWAQVLTALQKDSRE 330 (334)
T ss_dssp THHHHHTC-CHHHHHHHHHSCCTT-CCHHHHHHHHHHCCCEETTEEHHHHHHHHHC----
T ss_pred HHHHHhcC-CHHHHHHHHHhCCCc-CCHHHHHHHHHHccCcHHHhhHHHHHHHHHHHHHh
Confidence 99999996 899999999999765 8999999999876654 345666666665554
No 2
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=2.8e-46 Score=406.84 Aligned_cols=246 Identities=28% Similarity=0.478 Sum_probs=219.4
Q ss_pred CCHHHHHHHHhCCCCchhHHHHHHHHhcCccC---------CChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCC
Q 041508 233 PWKEELEVLVRGGLPMALRGELWQAFVGVRAR---------RVDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSV 303 (854)
Q Consensus 233 ~~~ekLk~Lir~GIP~~LR~~VW~lLLGi~~~---------~~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~ 303 (854)
...++|+.++++|||+.+|+.||++|+|+.+. .....|..++....
T Consensus 47 ~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l~~~~~------------------------- 101 (331)
T 3qye_A 47 FDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQLT------------------------- 101 (331)
T ss_dssp CCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHHTTSCC-------------------------
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHHHHhcC-------------------------
Confidence 45689999999999999999999999998651 12355666543211
Q ss_pred CCchhhhhhhhhcCCcCCCCCCCCCh---hhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcCChHHHHHHHHHhhH
Q 041508 304 CLPEKWKGQIEKDLPRTFPGHPALDN---DGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILD 380 (854)
Q Consensus 304 ~~~e~~~~qIekDV~RTfp~~~~F~e---~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~EedAFw~f~~Lm~ 380 (854)
...++|++||+||||++++|.. .++..|++||.+|+.+||++|||||||+|+++||++++|++|||||+.||.
T Consensus 102 ----~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~~ 177 (331)
T 3qye_A 102 ----SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMF 177 (331)
T ss_dssp ----TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHHT
T ss_pred ----CchhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1257999999999999999964 678999999999999999999999999999999999999999999999999
Q ss_pred hh-hcCCCCchhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchH
Q 041508 381 DY-FDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVM 459 (854)
Q Consensus 381 ~~-l~~yfs~~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~ 459 (854)
.+ ++++|.+++.+++..+.+|..||+.++|+||.||.+.|+.+.+|+++||+|+|+++||++.++||||+||++|..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~- 256 (331)
T 3qye_A 178 DMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEV- 256 (331)
T ss_dssp TTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTH-
T ss_pred hcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHH-
Confidence 87 7889999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHhhHHhhcCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHh
Q 041508 460 LFRTALALMELYGPALVTTKDAGDAVTLLQTLAGST--FDSSQLVLTACMG 508 (854)
Q Consensus 460 LFrvaLAIL~~~re~LL~~~D~~Eil~lLq~Lp~~~--~D~~~LI~~A~~~ 508 (854)
+|++|+|||..+++.|+++.|+++++.+|++.++.. .|++.++..|+..
T Consensus 257 l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 257 IFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp HHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhC
Confidence 889999999999999999999999999999854432 3677788888654
No 3
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.5e-46 Score=402.09 Aligned_cols=243 Identities=32% Similarity=0.601 Sum_probs=217.5
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhcCccCC-ChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCchhhhhhh
Q 041508 235 KEELEVLVRGGLPMALRGELWQAFVGVRARR-VDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCLPEKWKGQI 313 (854)
Q Consensus 235 ~ekLk~Lir~GIP~~LR~~VW~lLLGi~~~~-~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~e~~~~qI 313 (854)
.++|+.++++|||+.+|+.||+.|+|+.+.. ....|..++.+. ....++|
T Consensus 23 ~~~l~~l~~~GIP~~lR~~vW~~llg~~~~~~~~~~Y~~l~~~~-----------------------------~~~~~~I 73 (310)
T 3hzj_A 23 PKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRILITKD-----------------------------SAQESVI 73 (310)
T ss_dssp CTTHHHHHHHCCCGGGHHHHHHHHTTCCCCHHHHHHHHHHTTSC-----------------------------CTTHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCcchhHHHHHHHHHhcc-----------------------------CCcHHHH
Confidence 3679999999999999999999999997642 235555553211 1235899
Q ss_pred hhcCCcCCCCCCCCCh---hhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcCChHHHHHHHHHhhHhh-hcCCCCc
Q 041508 314 EKDLPRTFPGHPALDN---DGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGILDDY-FDGYYSE 389 (854)
Q Consensus 314 ekDV~RTfp~~~~F~e---~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~EedAFw~f~~Lm~~~-l~~yfs~ 389 (854)
++||+||||++++|.. .++..|++||.+|+.+||++|||||||+||++||++++|++|||||+.||.++ ++++|.+
T Consensus 74 ~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~~~~~~~~~~ 153 (310)
T 3hzj_A 74 TRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYRN 153 (310)
T ss_dssp HHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHTSCGGGGTHH
T ss_pred HHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCCHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999964 47999999999999999999999999999999999999999999999999987 7889999
Q ss_pred hhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 041508 390 EMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVLLFEGNRVMLFRTALALME 469 (854)
Q Consensus 390 ~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~ff~eG~~f~LFrvaLAIL~ 469 (854)
++.+++..+.+|+.||+.++|+||+||.+.|+.+.+|+++||+|+|++++|++.++||||+||++|..+ +|++|+|||.
T Consensus 154 ~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~-l~~v~lail~ 232 (310)
T 3hzj_A 154 NFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNI-IFHVALALLK 232 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 8899999999
Q ss_pred HhhHHhhcCCCHHHHHHHHH-hccCC---CCCHHHHHHHHHHh
Q 041508 470 LYGPALVTTKDAGDAVTLLQ-TLAGS---TFDSSQLVLTACMG 508 (854)
Q Consensus 470 ~~re~LL~~~D~~Eil~lLq-~Lp~~---~~D~~~LI~~A~~~ 508 (854)
.+++.|+++ |+++++.+|+ ++|.. ..|++.|+..|+..
T Consensus 233 ~~~~~Ll~~-d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 233 TSKEDLLQA-DFEGALKFFRVQLPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp HTHHHHHTC-CHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHcC-CHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence 999999997 9999999997 56643 34788899988754
No 4
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=6.7e-46 Score=406.28 Aligned_cols=274 Identities=22% Similarity=0.318 Sum_probs=224.1
Q ss_pred hcccccCCCHHHHHHHHhCCCCchhHHHHHHHHhcCccCCChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCC
Q 041508 226 TTLQSLFPWKEELEVLVRGGLPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSVCL 305 (854)
Q Consensus 226 ~~le~~~~~~ekLk~Lir~GIP~~LR~~VW~lLLGi~~~~~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~~~ 305 (854)
..+.......++|+.++++|||+.+|+.||++|+|+.+.....+-..+......|.....+..... + ...
T Consensus 31 ~~l~~~~~d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~-~---------~~~ 100 (345)
T 2qfz_A 31 QLLAGPNTDLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSR-N---------DEV 100 (345)
T ss_dssp HHHHCSBCCHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC------------------
T ss_pred HHHcCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC-C---------ccc
Confidence 333333456789999999999999999999999999875543222222222222211111111000 0 012
Q ss_pred chhhhhhhhhcCCcCCCCCCCCC-hhhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcC------------------
Q 041508 306 PEKWKGQIEKDLPRTFPGHPALD-NDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLM------------------ 366 (854)
Q Consensus 306 ~e~~~~qIekDV~RTfp~~~~F~-e~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm------------------ 366 (854)
+.+..++|++||+||||+ ++|+ +.++..|+|||.+|+.+||++|||||||+|+++||+++
T Consensus 101 ~~~~~~~I~~Dv~RT~p~-~~F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l 179 (345)
T 2qfz_A 101 HQDTYRQIHIDIPRMSPE-ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGV 179 (345)
T ss_dssp CHHHHHHHHHHGGGCSCH-HHHTSHHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTS
T ss_pred hHHHHHHHHHhCcccCCc-cccCCchHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhh
Confidence 346789999999999999 9886 45688999999999999999999999999999998765
Q ss_pred -------ChHHHHHHHHHhhHhhhcCCCCchhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCC
Q 041508 367 -------PEENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNML 439 (854)
Q Consensus 367 -------~EedAFw~f~~Lm~~~l~~yfs~~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eL 439 (854)
+|++|||||+.||..+ +++|..++.+++..+.+|..||+.++|+||.||.+.|+.+.+|+++||+|||+++|
T Consensus 180 ~~~~~~~~E~daF~~f~~lm~~~-~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~ 258 (345)
T 2qfz_A 180 PAEVLCNIEADTYWCMSKLLDGI-QDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREV 258 (345)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTS-GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTS
T ss_pred hhhhhhhHHHHHHHHHHHHHHcc-ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccC
Confidence 2889999999999987 67788888999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCch--HHHHHHHHHHHHhhHHhhcCCCHHHHHHHHHhccCCCC---CHHHHHHHHHHhhhh
Q 041508 440 PWESVLRIWDVLLFEGNRV--MLFRTALALMELYGPALVTTKDAGDAVTLLQTLAGSTF---DSSQLVLTACMGYQN 511 (854)
Q Consensus 440 Ple~vLRIWD~ff~eG~~f--~LFrvaLAIL~~~re~LL~~~D~~Eil~lLq~Lp~~~~---D~~~LI~~A~~~~~~ 511 (854)
|++.++||||+||++|..+ +++++|+|||..+++.||.+.|+++++.+|+++|...| |++.|+..|+.....
T Consensus 259 p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~~~ 335 (345)
T 2qfz_A 259 PLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKFA 335 (345)
T ss_dssp CHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999874 47889999999999999988999999999999998875 577888888766554
No 5
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=2.3e-44 Score=402.26 Aligned_cols=255 Identities=23% Similarity=0.341 Sum_probs=220.3
Q ss_pred CCHHHHHHHHhCCCCchhHHHHHHHHhcCccCCCh----------HHHHHHHHHhhhccCccccccCCCCCCCCCCCCCC
Q 041508 233 PWKEELEVLVRGGLPMALRGELWQAFVGVRARRVD----------KYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDS 302 (854)
Q Consensus 233 ~~~ekLk~Lir~GIP~~LR~~VW~lLLGi~~~~~e----------~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s 302 (854)
...++|+.++++|||+.+|+.||++|+|+.+.... ..|..++.... .. .
T Consensus 21 ~d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~----------~~-----------~ 79 (396)
T 1fkm_A 21 INQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTF----------SD-----------Q 79 (396)
T ss_dssp CCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTS----------SS-----------S
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHh----------hc-----------c
Confidence 56789999999999999999999999999876543 34555444321 10 0
Q ss_pred CCCchhhhhhhhhcCCcCCCCCCCCC-hhhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcC---------------
Q 041508 303 VCLPEKWKGQIEKDLPRTFPGHPALD-NDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLM--------------- 366 (854)
Q Consensus 303 ~~~~e~~~~qIekDV~RTfp~~~~F~-e~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm--------------- 366 (854)
...+.+..++|++||+||||++++|+ +.++..|+|||.+|+.+||++|||||||+|+++||+++
T Consensus 80 ~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~ 159 (396)
T 1fkm_A 80 HSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEI 159 (396)
T ss_dssp CSTHHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTT
T ss_pred CcccHHHHHHHHHHhhhhCCCcccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccc
Confidence 11345678999999999999999996 56899999999999999999999999999999998753
Q ss_pred -------C-------hHHHHHHHHHhhHhhhcCCCCchhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHH
Q 041508 367 -------P-------EENAFWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFL 432 (854)
Q Consensus 367 -------~-------EedAFw~f~~Lm~~~l~~yfs~~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWfl 432 (854)
+ |++|||||+.||..+ .++|..++.+++..+.+|..||+.++|+||+||.++|+.+.+|+++||+
T Consensus 160 ~~~~~~l~~~~~~~~E~daF~~f~~lm~~~-~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l 238 (396)
T 1fkm_A 160 KDPSTYMVDEQITDLEADTFWCLTKLLEQI-TDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMN 238 (396)
T ss_dssp SCGGGTCCHHHHHHHHHHHHHHHHHHHGGG-GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHH
T ss_pred cchhhccchhhhhhhHHHHHHHHHHHHHHH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3 889999999999985 7788888899999999999999999999999999999999999999999
Q ss_pred hhcccCCChHHHHHHHHHHHhcC---------------------------------------------------C-----
Q 041508 433 SIFMNMLPWESVLRIWDVLLFEG---------------------------------------------------N----- 456 (854)
Q Consensus 433 TLFs~eLPle~vLRIWD~ff~eG---------------------------------------------------~----- 456 (854)
|||+++||++.++||||+||++| .
T Consensus 239 ~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (396)
T 1fkm_A 239 CLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGK 318 (396)
T ss_dssp TTTGGGSCHHHHHHHHHHHHHHHC--------------------------------------------------------
T ss_pred HHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchh
Confidence 99999999999999999999988 2
Q ss_pred ------chHHHHHHHHHHHHhhHHhhcCCCHHHHHHHHHhccCCCC---CHHHHHHHHHHhhh
Q 041508 457 ------RVMLFRTALALMELYGPALVTTKDAGDAVTLLQTLAGSTF---DSSQLVLTACMGYQ 510 (854)
Q Consensus 457 ------~f~LFrvaLAIL~~~re~LL~~~D~~Eil~lLq~Lp~~~~---D~~~LI~~A~~~~~ 510 (854)
..+++++|+|||..+++.||. .|+++++++|+++|...| |++.|+..|+....
T Consensus 319 ~~~~~~~~~~~~v~~AlL~~~r~~Ll~-~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~ 380 (396)
T 1fkm_A 319 MRQSSLNEFHVFVCAAFLIKWSDQLME-MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQS 380 (396)
T ss_dssp ----CHHHHHHHHHHHHHHHTHHHHTT-CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHH
Confidence 124778999999999999998 589999999999998764 78889988875433
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=9.3e-45 Score=389.23 Aligned_cols=256 Identities=16% Similarity=0.193 Sum_probs=223.4
Q ss_pred cccccCCCHHHHHHHHhC--C-CCchhHHHHHHHHhcCccCCChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCCC
Q 041508 227 TLQSLFPWKEELEVLVRG--G-LPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDSV 303 (854)
Q Consensus 227 ~le~~~~~~ekLk~Lir~--G-IP~~LR~~VW~lLLGi~~~~~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s~ 303 (854)
.+.......++|+.+++. | ||+.+|+.||+.|+|+.+...+..|..+..
T Consensus 26 ~l~~~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~~~~~~~---------------------------- 77 (292)
T 4hl4_A 26 ALNSDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPISGKNLR---------------------------- 77 (292)
T ss_dssp HHTSSSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSCCCTTHH----------------------------
T ss_pred HHcCCcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCchhhhhc----------------------------
Confidence 344444567899999884 3 899999999999999987765443321110
Q ss_pred CCchhhhhhhhhcCCcCCCCCCCCC-----hhhHHHHHHHHHHHHhhCCCCCccccchHHHHHHhhcCChHHHHHHHHHh
Q 041508 304 CLPEKWKGQIEKDLPRTFPGHPALD-----NDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALMGI 378 (854)
Q Consensus 304 ~~~e~~~~qIekDV~RTfp~~~~F~-----e~g~~~LrrIL~aYa~~nP~VGY~QGMn~Iaa~LLlvm~EedAFw~f~~L 378 (854)
.+.+..+||++||+||||.++.|. ..++..|++||.+|+.+||++|||||||+|+++||++++|++|||||+.|
T Consensus 78 -~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~e~~aF~~l~~l 156 (292)
T 4hl4_A 78 -QMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKL 156 (292)
T ss_dssp -HHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -ccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 012457899999999999999874 24578999999999999999999999999999999999999999999999
Q ss_pred hHhhhcCCCCchhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCC-hHHHHHHHHHHHhcCCc
Q 041508 379 LDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLP-WESVLRIWDVLLFEGNR 457 (854)
Q Consensus 379 m~~~l~~yfs~~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLP-le~vLRIWD~ff~eG~~ 457 (854)
|..++++||.+++.+++..+.++..+|+.++|+||+||.+.++ ..+|+++||+|+|++++| ++.++||||+||++|+.
T Consensus 157 ~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~ 235 (292)
T 4hl4_A 157 STHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPL 235 (292)
T ss_dssp HHTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCc
Confidence 9998999999999998888899999999999999999999999 579999999999999996 99999999999999998
Q ss_pred hHHHHHHHHHHHHhhHHhhcCC-CHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhcch
Q 041508 458 VMLFRTALALMELYGPALVTTK-DAGDAVTLLQTLAGSTFDSSQLVLTACMGYQNHRP 514 (854)
Q Consensus 458 f~LFrvaLAIL~~~re~LL~~~-D~~Eil~lLq~Lp~~~~D~~~LI~~A~~~~~~~r~ 514 (854)
+ ++++|+|||..+++.||++. |++.++.+|+++| ..+|++.|+..|...|..++|
T Consensus 236 ~-~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp-~~~d~~~li~~A~~l~~~~pp 291 (292)
T 4hl4_A 236 M-PIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIP-QDLPYETLISRAGDLFVQFPP 291 (292)
T ss_dssp H-HHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCC-SSCCHHHHHHHHHHHHHHSCC
T ss_pred H-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHCCC
Confidence 7 77899999999999999975 7888999999987 468999999999999988776
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=308.42 Aligned_cols=246 Identities=15% Similarity=0.233 Sum_probs=195.5
Q ss_pred hhhcccccCCCHHHHHHHHhCC-CCchhHHHHHHHHhcCccCCChHHHHHHHHHhhhccCccccccCCCCCCCCCCCCCC
Q 041508 224 DATTLQSLFPWKEELEVLVRGG-LPMALRGELWQAFVGVRARRVDKYYQDLLSAESNFGNNMEQHSSQSDNDSKSSTKDS 302 (854)
Q Consensus 224 ~~~~le~~~~~~ekLk~Lir~G-IP~~LR~~VW~lLLGi~~~~~e~~Y~~LL~k~~~~~~~~~q~~~~~~~~~~~~~~~s 302 (854)
++..+.+.....++|+.++|+| ||+.+|+.||++|+|+.|...+..-..+..+...|.+.+.+
T Consensus 29 ~~~ll~~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~---------------- 92 (294)
T 3qwl_A 29 LEILLKDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHA---------------- 92 (294)
T ss_dssp HHHHTTSSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHhcCCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHh----------------
Confidence 4456777778899999999988 99999999999999999987766555555666655322221
Q ss_pred CCCchhhhhhhhhcCCcCCCCCCCCChhhHHHHHHHHHHHHhh----------CCCCCccccchHHHHHHhhcC-ChHHH
Q 041508 303 VCLPEKWKGQIEKDLPRTFPGHPALDNDGRNALRRLLTAYARH----------NPSVGYCQAMNFFAALLLLLM-PEENA 371 (854)
Q Consensus 303 ~~~~e~~~~qIekDV~RTfp~~~~F~e~g~~~LrrIL~aYa~~----------nP~VGY~QGMn~Iaa~LLlvm-~EedA 371 (854)
.+..++|+.+.++ ...+|..|... +++ .++|||..|++++++++ +|++|
T Consensus 93 ----~~~~r~I~~~tP~---------------~~vfl~~~~~~~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~E~dA 152 (294)
T 3qwl_A 93 ----LKVVRFVSDATPQ---------------AEVYLRMYQLESGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVEDSVDC 152 (294)
T ss_dssp ----HHHTTSCCTTSCH---------------HHHHHHHHHHHHTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCSHHHH
T ss_pred ----hhhhhhhhccCch---------------HHHHHHHHHcccccccccccCCcc-cchhhHHHHHHHHHHHhCCHHHH
Confidence 1123344442221 11222233221 222 25699999999988654 89999
Q ss_pred HHHHHHhhHhhhcCCCCchhHHHHHHHHHHHHHHHhhccchhhhhhhcCCccccchhhhHHhhcccCCChHHHHHHHHHH
Q 041508 372 FWALMGILDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRIWDVL 451 (854)
Q Consensus 372 Fw~f~~Lm~~~l~~yfs~~~~~l~~~~~vLe~LLk~~dPeL~~HL~~lgI~~~~fa~rWflTLFs~eLPle~vLRIWD~f 451 (854)
||||++||++. .++|.+++++++. .++.||+.++|+||.||+++|+.+.+|+.+||+|+|+++||++.++||||+|
T Consensus 153 FW~f~~Lm~~l-~~~f~~~~~gl~~---~l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~ 228 (294)
T 3qwl_A 153 YWITRRFVNQL-NTKYRDSLPQLPK---AFEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKV 228 (294)
T ss_dssp HHHHHHHHHHH-HTTTTTTGGGHHH---HHHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhhCCChhHHHH---HHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 99999999984 6788888888875 4589999999999999999999888777799999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHHHhhHHhhcCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhhhhc
Q 041508 452 LFEGNRVMLFRTALALMELYGPALVTTKDAGDAVTLLQTLAGSTFDSSQLVLTACMGYQNH 512 (854)
Q Consensus 452 f~eG~~f~LFrvaLAIL~~~re~LL~~~D~~Eil~lLq~Lp~~~~D~~~LI~~A~~~~~~~ 512 (854)
|++|..+ ++++|+|||+.+++.|++++++++++.+|+++|. .|++.|+..|...|+.+
T Consensus 229 ~~~~~~~-l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~--~di~~ll~~A~~l~~~~ 286 (294)
T 3qwl_A 229 VSGSCKI-LVFVAVEILLTFKIKVMALNSAEKITKFLENIPQ--DSSDAIVSKAIDLWHKH 286 (294)
T ss_dssp HTTCSTH-HHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCS--TTHHHHHHHHHHHHHHH
T ss_pred HhCCchH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCc--ccHHHHHHHHHHHHHHc
Confidence 9999888 8889999999999999999888999999999985 46899999998877653
No 8
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=89.36 E-value=18 Score=35.77 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 041508 645 RVEQLEQEVSE 655 (854)
Q Consensus 645 ~~~~le~e~~~ 655 (854)
++..++.++..
T Consensus 77 ~~~~~~~~~~~ 87 (284)
T 1c1g_A 77 KATDAEADVAS 87 (284)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.99 E-value=15 Score=51.02 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 041508 703 QVLQEKYEEAIASLAE 718 (854)
Q Consensus 703 ~~~~~~~~~~~~~~~~ 718 (854)
..||++|++|++--..
T Consensus 2045 ~~L~~~~~~~~~ek~~ 2060 (3245)
T 3vkg_A 2045 ATYKEEYATLIRETEQ 2060 (3245)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466666666554333
No 10
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.70 E-value=14 Score=34.76 Aligned_cols=86 Identities=10% Similarity=0.216 Sum_probs=57.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQD--NRRQLSARVEQLEQEVSELRRILADKQEQESAMIQ 672 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d--~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~ 672 (854)
+...+.++..++..+..|--++.+....-.-|+..+.++-..- ...++++++..||.++..+|.-++..-..+...|-
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555566777776655322 34678889999999999988887777666777777
Q ss_pred HHHHHHHH
Q 041508 673 VLMRVEQE 680 (854)
Q Consensus 673 ~~~r~~q~ 680 (854)
+=|+++.|
T Consensus 111 vKl~Ld~E 118 (129)
T 3tnu_B 111 TKLALDVE 118 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777766
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.21 E-value=8.9 Score=53.14 Aligned_cols=84 Identities=19% Similarity=0.240 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhh--------hhHHH----------------
Q 041508 642 LSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAE--------QDAAA---------------- 697 (854)
Q Consensus 642 l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~--------~~~~~---------------- 697 (854)
-+++|+.|..++++++..|..|++.-.+||+.+.. ++..+|.-+..++ |.+.+
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~---~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~P 2008 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ---DQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEP 2008 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 35588889999999999998888887777777643 3333333222221 11111
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 041508 698 ---QRYAAQVLQEKYEEAIASLAEMEKRVVMAES 728 (854)
Q Consensus 698 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (854)
-|=+...+++++++|++.|++.+....-.|.
T Consensus 2009 a~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~ 2042 (3245)
T 3vkg_A 2009 TGPLREEVEQLENAANELKLKQDEIVATITALEK 2042 (3245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234456677777777777776665544433
No 12
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.40 E-value=12 Score=35.35 Aligned_cols=78 Identities=23% Similarity=0.337 Sum_probs=49.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQD--NRRQLSARVEQLEQEVSELRRILADKQEQESAMIQV 673 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d--~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~ 673 (854)
.++..++..|..||.-+ ...-.-|+..+.++-..- ...++++++..||.++..+|.-++..-..++..|-+
T Consensus 41 ~elrr~iq~L~~el~~l-------~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~v 113 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQ-------LSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDV 113 (131)
T ss_dssp CHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333 333344555555544221 246788899999999999988887777777778887
Q ss_pred HHHHHHH
Q 041508 674 LMRVEQE 680 (854)
Q Consensus 674 ~~r~~q~ 680 (854)
=|+++.|
T Consensus 114 Kl~Ld~E 120 (131)
T 3tnu_A 114 KTRLEQE 120 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777766
No 13
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=81.88 E-value=15 Score=41.97 Aligned_cols=66 Identities=21% Similarity=0.277 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHH
Q 041508 637 DNRRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEA 712 (854)
Q Consensus 637 d~r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (854)
+|-.+-++|+..-.+||++++++=+|.++-+.+.|..+ =++-|+|-||-.|..||+|+. +.+||++
T Consensus 2 ~~~a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~--------~a~n~~i~aeNeaikkrNa~a--ka~Ye~~ 67 (497)
T 3iox_A 2 ANEADYQAKLTAYQTELARVQKANADAKAAYEAAVAAN--------NAANAALTAENTAIKKRNADA--KADYEAK 67 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhhHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 56678899999999999999999999998888777666 256678999999999999875 4445444
No 14
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=79.16 E-value=10 Score=33.48 Aligned_cols=64 Identities=28% Similarity=0.372 Sum_probs=47.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------------HHH------HHHHHHHHHHHHHHHHHH
Q 041508 595 VPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMV-------------KQD------NRRQLSARVEQLEQEVSE 655 (854)
Q Consensus 595 ~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~-------------~~d------~r~~l~~~~~~le~e~~~ 655 (854)
+.+|+.|+..+..+-+++.-++....+.++++...+.+=+ ++| +|..|.+|++.|..|+.=
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999988888888766554322 111 567777777777777776
Q ss_pred HHH
Q 041508 656 LRR 658 (854)
Q Consensus 656 ~~~ 658 (854)
||+
T Consensus 82 Lkk 84 (86)
T 3swk_A 82 LKK 84 (86)
T ss_dssp HTT
T ss_pred Hhh
Confidence 654
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.87 E-value=47 Score=37.89 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041508 705 LQEKYEEAIASLAEMEK 721 (854)
Q Consensus 705 ~~~~~~~~~~~~~~~~~ 721 (854)
|++.-..+.+.+.++++
T Consensus 563 l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 563 LRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444555443
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=74.04 E-value=30 Score=43.44 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041508 641 QLSARVEQLEQEVSELRRILAD 662 (854)
Q Consensus 641 ~l~~~~~~le~e~~~~~~~~~~ 662 (854)
.|+.+|..|+.|.+.|++.+.|
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.43 E-value=22 Score=44.55 Aligned_cols=14 Identities=7% Similarity=0.339 Sum_probs=6.2
Q ss_pred CCCchhHHHHHHHH
Q 041508 245 GLPMALRGELWQAF 258 (854)
Q Consensus 245 GIP~~LR~~VW~lL 258 (854)
||+++-...||.+|
T Consensus 316 g~~~~e~~~i~~il 329 (1080)
T 2dfs_A 316 GISDSYQMGIFRIL 329 (1080)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 44444444444444
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.79 E-value=97 Score=32.03 Aligned_cols=17 Identities=0% Similarity=0.155 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 041508 666 QESAMIQVLMRVEQEQK 682 (854)
Q Consensus 666 ~~~~~~~~~~r~~q~~~ 682 (854)
-|..+++.|-+++.-++
T Consensus 109 lE~eile~~e~ie~~~~ 125 (256)
T 3na7_A 109 ANREIENLQNEIKRKSE 125 (256)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555655555443
No 19
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=71.55 E-value=41 Score=31.18 Aligned_cols=65 Identities=28% Similarity=0.362 Sum_probs=46.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------------HHH------HHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMV-------------KQD------NRRQLSARVEQLEQEVSEL 656 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~-------------~~d------~r~~l~~~~~~le~e~~~~ 656 (854)
.+|+.|+..+..|-+++.-++....+.++++...+.+-+ +++ +|..|.++++.|..|+.=|
T Consensus 23 ~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 23 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889888888888888888888887777655443221 221 4667777777777777776
Q ss_pred HHHH
Q 041508 657 RRIL 660 (854)
Q Consensus 657 ~~~~ 660 (854)
|+.-
T Consensus 103 Kk~h 106 (119)
T 3ol1_A 103 KKLH 106 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 20
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=66.95 E-value=9.7 Score=48.11 Aligned_cols=19 Identities=11% Similarity=0.094 Sum_probs=12.0
Q ss_pred hCCCCchhHHHHHHHHhcC
Q 041508 243 RGGLPMALRGELWQAFVGV 261 (854)
Q Consensus 243 r~GIP~~LR~~VW~lLLGi 261 (854)
.-||+.+-...||.+|.++
T Consensus 340 ~lg~~~~e~~~i~~ilaai 358 (1184)
T 1i84_S 340 IMGFTEEEQTSILRVVSSV 358 (1184)
T ss_dssp HHTCCHHHHHHHHHHHHHH
T ss_pred hceeCHHHHHHHHHHHHHH
Confidence 3467766666667666554
No 21
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=64.83 E-value=20 Score=29.70 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 621 LRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILAD 662 (854)
Q Consensus 621 lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~ 662 (854)
.+.++|+....++-.. ..+|.++++.|+.|+.-|+.+|.+
T Consensus 23 ~~~~~le~~~~~L~~~--N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 23 AEQEALTGECKELEKK--NEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566777777544443 567888999999999998888754
No 22
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=63.25 E-value=17 Score=45.90 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041508 643 SARVEQLEQEVSELRRILA 661 (854)
Q Consensus 643 ~~~~~~le~e~~~~~~~~~ 661 (854)
..+.++|+.++.++..-+.
T Consensus 919 ~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 919 AAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 23
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.12 E-value=69 Score=29.95 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 601 QVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELR 657 (854)
Q Consensus 601 q~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~ 657 (854)
++..|+.|++.|-.++.+-.+++- ..=.+|..+|-+||+|+++-+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q------------~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQ------------RVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 344466666665554443322221 112455667777888887743
No 24
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=59.30 E-value=1.1e+02 Score=28.30 Aligned_cols=102 Identities=22% Similarity=0.244 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 600 EQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNR---RQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMR 676 (854)
Q Consensus 600 eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r---~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r 676 (854)
.|...|..++.++-++.-+......+|+..+. -...|-. ..|..++..-|+.+.+|+++++.-+..=...|++|+.
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~-~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~ 84 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIK-QSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444554444444444444455655553 2333333 4556688888999999999999999988888888864
Q ss_pred HHHHhhhhHHHHhhhhhhHHHhHHHHH
Q 041508 677 VEQEQKVTEDARRFAEQDAAAQRYAAQ 703 (854)
Q Consensus 677 ~~q~~~~~~~~~~~~~~~~~~~~~~~~ 703 (854)
= +|+=-.|--|.-+|-|--.=||-+|
T Consensus 85 ~-Re~V~~eL~rLQ~eNd~L~Gk~~~h 110 (112)
T 1x79_B 85 S-REQVSEELVRLQKDNDSLQGKHSLH 110 (112)
T ss_dssp H-HHHHHTC------------------
T ss_pred H-HHHHHHHHHHHHhhccchhhhhhhc
Confidence 3 2222233334445555444444443
No 25
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=55.64 E-value=1e+02 Score=26.72 Aligned_cols=42 Identities=14% Similarity=0.329 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 639 RRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQE 680 (854)
Q Consensus 639 r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~ 680 (854)
..++++++..||.+++++|.-++..-..++..|-+=|+++.|
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~E 69 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIE 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 467788999999999998887776666677777776777665
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.09 E-value=38 Score=32.37 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=30.3
Q ss_pred chhHHhhhhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041508 578 NADEVLISLTGDGEIDSVPDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMV 634 (854)
Q Consensus 578 ~~~~~~~~~~~~~e~~~~~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~ 634 (854)
|+.+.|..+.. ....|+.++..+..|+-.|-++..+..++.+++...+.+..
T Consensus 65 NiadEl~k~~~-----~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~ 116 (138)
T 3hnw_A 65 NIADDYFKAKK-----MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELK 116 (138)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555432 13556666666666666666666666666666666664443
No 27
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=54.01 E-value=12 Score=43.59 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQ 664 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~ 664 (854)
.+|++++..++-|..+.-++.+...-+|+.|+..+. +.+..+..|..+...+|++..+|+..-.+..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~--~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~ 404 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLR--QLQAAKEELEQRQNELQAMMQRLEETKNMEA 404 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 667777777777777777777777777777777764 3344466777777777777777665544333
No 28
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=52.36 E-value=86 Score=27.77 Aligned_cols=44 Identities=30% Similarity=0.508 Sum_probs=30.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 621 LRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQEQ 666 (854)
Q Consensus 621 lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~~~ 666 (854)
.+..+++....+.... -.+|.++|++|+.|+..|+.+|.....+
T Consensus 36 ~r~~e~~~r~~~Le~E--N~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 36 MRNLETQHKVLELTAE--NERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 5556666666433333 3578899999999999999999886664
No 29
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=49.61 E-value=1e+02 Score=27.62 Aligned_cols=42 Identities=14% Similarity=0.310 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 639 RRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQE 680 (854)
Q Consensus 639 r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~ 680 (854)
..++++.+..||.++++++.-++..-..+...|-+=|+++.|
T Consensus 39 ~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~E 80 (95)
T 3mov_A 39 KDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDME 80 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777788888777776666655566666666666655
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=48.97 E-value=1.4e+02 Score=29.02 Aligned_cols=60 Identities=25% Similarity=0.231 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELR 657 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~ 657 (854)
..|+.++..++.++.++-++++...-.-+.|..++.-.-.+ -..+..|+..|++|-..|-
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq--~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIE--NNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444443334444444322222 2334445555555555443
No 31
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=47.58 E-value=30 Score=25.81 Aligned_cols=17 Identities=53% Similarity=0.702 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041508 640 RQLSARVEQLEQEVSEL 656 (854)
Q Consensus 640 ~~l~~~~~~le~e~~~~ 656 (854)
.||.+|||.|..+..+|
T Consensus 4 nQLE~kVEeLl~~~~~L 20 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHL 20 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHH
Confidence 36667777666655553
No 32
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=46.50 E-value=61 Score=25.95 Aligned_cols=38 Identities=37% Similarity=0.451 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 041508 641 QLSARVEQLEQEVSELRRILAD------KQEQESAMIQVLMRVE 678 (854)
Q Consensus 641 ~l~~~~~~le~e~~~~~~~~~~------~~~~~~~~~~~~~r~~ 678 (854)
||-.+||.|..|-+.||+-|.| |=|-|+-.|..+++.=
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 5666888888888888888877 5567777777776543
No 33
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=46.47 E-value=55 Score=26.75 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 641 QLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQE 680 (854)
Q Consensus 641 ~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~ 680 (854)
++++++..||.++++++.-.+..-..++..|.+=|+++.|
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~E 43 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIE 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5778888999888888877776666677777777777665
No 34
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=46.18 E-value=57 Score=28.03 Aligned_cols=42 Identities=14% Similarity=0.337 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 639 RRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQE 680 (854)
Q Consensus 639 r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~ 680 (854)
|.++++.+..||.++++++.-+...-..++..|.+=|+++.|
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~E 48 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDME 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888777766666666677776676665
No 35
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=44.76 E-value=1e+02 Score=26.68 Aligned_cols=40 Identities=30% Similarity=0.550 Sum_probs=28.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 621 LRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILAD 662 (854)
Q Consensus 621 lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~ 662 (854)
.+..+++....+...+ -.+|.++|++|+.|+..|+.+|..
T Consensus 36 ~r~~e~~~r~~~L~~e--N~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 36 MRNLETQHKVLELTAE--NERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666444333 357888999999999999988753
No 36
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=44.36 E-value=1.3e+02 Score=26.30 Aligned_cols=42 Identities=14% Similarity=0.337 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 639 RRQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQE 680 (854)
Q Consensus 639 r~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~ 680 (854)
..++++++..||.+++++|.-+...-..++..|-+=|+++.|
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~E 71 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDME 71 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345677888888888887776666656666666666666655
No 37
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.75 E-value=2.3e+02 Score=25.60 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 638 NRRQLSARVEQLEQEVSELRRILADKQ 664 (854)
Q Consensus 638 ~r~~l~~~~~~le~e~~~~~~~~~~~~ 664 (854)
.|........++++||.+|--.|=+.-
T Consensus 41 ~R~~aE~~~~~ie~ElEeLTasLFeEA 67 (97)
T 2eqb_B 41 LRTKAEEEADKLNKEVEDLTASLFDEA 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777788889999999877776543
No 38
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=33.69 E-value=1.3e+02 Score=24.47 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 621 LRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRIL 660 (854)
Q Consensus 621 lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~ 660 (854)
...++|+.....+..+ -..|.++|..|..|+..|++.|
T Consensus 22 ~~~~~Le~~~~~L~~~--n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSL--NGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 3446666665433332 3467777888888888877765
No 39
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=32.22 E-value=2.8e+02 Score=24.96 Aligned_cols=61 Identities=25% Similarity=0.301 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 605 LKVELCRLLEEKRSALLRAEE---LETALMEMVKQDNRRQ--LSARVEQLEQEVSELRRILADKQE 665 (854)
Q Consensus 605 lk~El~~ll~e~r~~~lraee---le~a~~e~~~~d~r~~--l~~~~~~le~e~~~~~~~~~~~~~ 665 (854)
|+.+|-+.-+-.|.+.+.|.- --..|++-++.+.... -+++|+.|+.|+..|.+-|.|..-
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~ 88 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRI 88 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544421 2233444444443332 256899999999999998887763
No 40
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=31.98 E-value=74 Score=23.75 Aligned_cols=15 Identities=40% Similarity=0.580 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 041508 641 QLSARVEQLEQEVSE 655 (854)
Q Consensus 641 ~l~~~~~~le~e~~~ 655 (854)
||.+|||.|-.+..+
T Consensus 5 QLE~KVEeLl~~~~~ 19 (36)
T 1kd8_B 5 QLKAKVEELKSKLWH 19 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHH
Confidence 566666655444444
No 41
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=31.73 E-value=1.7e+02 Score=25.89 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=22.7
Q ss_pred chhHHhhhhcCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 041508 578 NADEVLISLTGDGEIDSVPDLQEQVVWLKVELCRLLEE 615 (854)
Q Consensus 578 ~~~~~~~~~~~~~e~~~~~~l~eq~~~lk~El~~ll~e 615 (854)
++.+.+++. ||.|..|+.|+..|..++..+-..
T Consensus 13 ~LNdRlAsy-----IdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 13 ELNDRFANL-----IDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555 445789999999888888666543
No 42
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=31.72 E-value=3.2e+02 Score=25.37 Aligned_cols=17 Identities=53% Similarity=0.786 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041508 642 LSARVEQLEQEVSELRR 658 (854)
Q Consensus 642 l~~~~~~le~e~~~~~~ 658 (854)
|+++-..|++++.+|++
T Consensus 102 L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 102 LTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 43
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=31.20 E-value=30 Score=22.78 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 041508 707 EKYEEAIASLAEMEKRV 723 (854)
Q Consensus 707 ~~~~~~~~~~~~~~~~~ 723 (854)
..|++|-..-|.||||-
T Consensus 4 nrydqaatlrakmekre 20 (23)
T 3syn_E 4 NRYDQAATLRAKMEKRE 20 (26)
T ss_pred chHHHHHHHHHHHHHHh
Confidence 36899999999999984
No 44
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=29.67 E-value=4.7e+02 Score=26.75 Aligned_cols=7 Identities=29% Similarity=0.363 Sum_probs=3.0
Q ss_pred hhhHHHH
Q 041508 721 KRVVMAE 727 (854)
Q Consensus 721 ~~~~~~~ 727 (854)
+|..++.
T Consensus 165 ~r~~l~~ 171 (256)
T 3na7_A 165 KKEDLVE 171 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444444
No 45
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.60 E-value=68 Score=26.22 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=21.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 621 LRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRIL 660 (854)
Q Consensus 621 lraeele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~ 660 (854)
.+.++|+....++..+ ...|.++|..|..|+..|++.|
T Consensus 22 ~~~~~Le~~v~~L~~~--n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQ--NSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666665444333 4566777777777777776655
No 46
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=29.36 E-value=90 Score=22.88 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 041508 641 QLSARVEQLEQEVSE 655 (854)
Q Consensus 641 ~l~~~~~~le~e~~~ 655 (854)
||.+|||.|-++..+
T Consensus 4 QLEdKVEell~~~~~ 18 (33)
T 2wq1_A 4 QLEDKIEENTSKIYH 18 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHH
Confidence 555666655444444
No 47
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=26.24 E-value=57 Score=23.96 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041508 645 RVEQLEQEVSELRRILA 661 (854)
Q Consensus 645 ~~~~le~e~~~~~~~~~ 661 (854)
+...|++||++|+.+|.
T Consensus 15 ~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 15 KNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHhh
Confidence 44455666666665553
No 48
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.75 E-value=1.2e+02 Score=22.32 Aligned_cols=14 Identities=21% Similarity=0.471 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 041508 647 EQLEQEVSELRRIL 660 (854)
Q Consensus 647 ~~le~e~~~~~~~~ 660 (854)
..|+.||++|+.+|
T Consensus 18 ~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 18 YHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34555555555544
No 49
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=24.71 E-value=3.9e+02 Score=24.40 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=9.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSAL 620 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~ 620 (854)
.++++.-..-=+.-++|.+||-.-+
T Consensus 5 ~EvEEKyrKAMVsnAQLDNEKsal~ 29 (103)
T 4h22_A 5 AEVEEKYKKAMVSNAQLDNEKTNFM 29 (103)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3333333333334455555554433
No 50
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.35 E-value=5.3e+02 Score=28.57 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 041508 640 RQLSARVEQLEQEVSELRRILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASLAEM 719 (854)
Q Consensus 640 ~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (854)
+-+..+|+.|.++|.++.|.-.+- -+++..|-.+||=.|.|.-.-|.++...-+.-.+||. .||++-..-+..|..|
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~-~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~--~lk~~V~~q~~~ir~L 139 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDS-NTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIE--ILRRKVIEQVQRINLL 139 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHH
Confidence 445567888888888887776655 3667777777777777777777777777777777764 4555555544444444
Q ss_pred H
Q 041508 720 E 720 (854)
Q Consensus 720 ~ 720 (854)
+
T Consensus 140 q 140 (390)
T 1deq_A 140 Q 140 (390)
T ss_pred H
Confidence 3
No 51
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=23.93 E-value=1.1e+02 Score=22.58 Aligned_cols=17 Identities=18% Similarity=0.638 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041508 645 RVEQLEQEVSELRRILA 661 (854)
Q Consensus 645 ~~~~le~e~~~~~~~~~ 661 (854)
+...||.||++|+.+|.
T Consensus 16 ~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 16 KLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHc
Confidence 44556667777766654
No 52
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.42 E-value=3.9e+02 Score=23.64 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=36.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETAL-------------MEMVKQDNRRQLSARVEQLEQEVSELRRILAD 662 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~-------------~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~ 662 (854)
+.++.++..+...+..+-.+++..-+-.++|+..= ++.=+.+..-.|..+.+.++.++..|.+-+.+
T Consensus 16 ~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~ 95 (117)
T 2zqm_A 16 ESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKK 95 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666665555555533210 00002233455555666666666655555544
Q ss_pred HHHH
Q 041508 663 KQEQ 666 (854)
Q Consensus 663 ~~~~ 666 (854)
.+++
T Consensus 96 l~~~ 99 (117)
T 2zqm_A 96 LNEK 99 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 53
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=22.93 E-value=5.5e+02 Score=25.28 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 639 RRQLSARVEQLEQEVSELRRILADKQEQ 666 (854)
Q Consensus 639 r~~l~~~~~~le~e~~~~~~~~~~~~~~ 666 (854)
-..|.+....|++++..|+-.|...+..
T Consensus 57 ~~~L~~~k~~Leke~~~LQa~L~qEr~~ 84 (168)
T 3o0z_A 57 NRILENSKSQTDKDYYQLQAILEAERRD 84 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777766655533
No 54
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.86 E-value=2.1e+02 Score=32.95 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041508 700 YAAQVLQEKYEEAIASLAEME 720 (854)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~ 720 (854)
++-+|=.+-||.--..|.|..
T Consensus 169 ~~~~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 169 LAREVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp CCCCCCHHHHHHHHHHHHHHH
T ss_pred heeecchHHHHHHHHHHHHHh
Confidence 344555666766655555543
No 55
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.33 E-value=3.9e+02 Score=23.26 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 596 PDLQEQVVWLKVELCRLLEEKRSALLRAEELETAL-------------MEMVKQDNRRQLSARVEQLEQEVSELRRILAD 662 (854)
Q Consensus 596 ~~l~eq~~~lk~El~~ll~e~r~~~lraeele~a~-------------~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~ 662 (854)
+.++.++..+...+..+-.+++..-+-.+||+..= ++.=+.+....|..+.+.++.++..|.+-+.+
T Consensus 11 ~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~ 90 (107)
T 1fxk_A 11 QQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEER 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555544444433210 00013334466666777777777776666655
Q ss_pred HHHH
Q 041508 663 KQEQ 666 (854)
Q Consensus 663 ~~~~ 666 (854)
.+++
T Consensus 91 ~~~~ 94 (107)
T 1fxk_A 91 VMKK 94 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 56
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=21.93 E-value=1.5e+02 Score=21.74 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 041508 647 EQLEQEVSELRRIL 660 (854)
Q Consensus 647 ~~le~e~~~~~~~~ 660 (854)
..|+.||++|+.+|
T Consensus 17 ~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 17 YHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34555565555544
No 57
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=21.88 E-value=2.5e+02 Score=26.57 Aligned_cols=72 Identities=26% Similarity=0.425 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHH
Q 041508 640 RQLSARVEQLEQEVSELRR---ILADKQEQESAMIQVLMRVEQEQKVTEDARRFAEQDAAAQRYAAQVLQEKYEEAIASL 716 (854)
Q Consensus 640 ~~l~~~~~~le~e~~~~~~---~~~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (854)
+-++.++..++.|+.+++| ..-|+-+=.+--|+-=+|||| |+.+|+=|.+|.- ..|-+-|=.-|..++.++
T Consensus 33 ~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr-~~~~eEKrkLAqL-----Q~AY~~LfqeYd~~lK~~ 106 (130)
T 3cl3_D 33 RAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMER-QAASEEKRKLAQL-----QVAYHQLFQEYDNHIKSS 106 (130)
T ss_dssp ------------------CTTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 3344455555555555444 223444444445666677776 5677777877753 334566777899988765
Q ss_pred H
Q 041508 717 A 717 (854)
Q Consensus 717 ~ 717 (854)
-
T Consensus 107 ~ 107 (130)
T 3cl3_D 107 V 107 (130)
T ss_dssp H
T ss_pred H
Confidence 3
No 58
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.46 E-value=3e+02 Score=25.21 Aligned_cols=22 Identities=45% Similarity=0.561 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041508 644 ARVEQLEQEVSELRRILADKQE 665 (854)
Q Consensus 644 ~~~~~le~e~~~~~~~~~~~~~ 665 (854)
+-|..|+.-+++|++.|+|...
T Consensus 82 ~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888999998888654
No 59
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=21.37 E-value=2.9e+02 Score=24.04 Aligned_cols=28 Identities=36% Similarity=0.615 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 629 ALMEMVKQDNRRQLSARVEQLEQEVSELRR 658 (854)
Q Consensus 629 a~~e~~~~d~r~~l~~~~~~le~e~~~~~~ 658 (854)
||-+.++. -++|-..+++++.|++.|+.
T Consensus 28 AL~eaL~E--N~~Lh~~ie~~~eEi~~Lke 55 (79)
T 2zxx_A 28 ALYEALKE--NEKLHKEIEQKDSEIARLRK 55 (79)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 33344433 34455577777777766553
No 60
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.33 E-value=2.3e+02 Score=25.76 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 638 NRRQLSARVEQLEQEVSELRRILADKQE 665 (854)
Q Consensus 638 ~r~~l~~~~~~le~e~~~~~~~~~~~~~ 665 (854)
++.+....+++|.+|+..||..+...++
T Consensus 69 a~~~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 69 ARQRLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456667899999999999988876554
No 61
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.59 E-value=1.3e+02 Score=22.09 Aligned_cols=28 Identities=36% Similarity=0.414 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 640 RQLSARVEQLEQEVSELRRILADKQEQESAMIQVLM 675 (854)
Q Consensus 640 ~~l~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~ 675 (854)
.||.+|||.|-++..+|+ +|++-|+.|+
T Consensus 3 ~QLE~kVEeLl~~n~~Le--------~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLE--------NEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHH--------HHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHH--------HHHHHHHHHh
Confidence 378889999988888864 4566666554
No 62
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.53 E-value=5.2e+02 Score=24.07 Aligned_cols=60 Identities=25% Similarity=0.310 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041508 604 WLKVELCRLLEEKRSALLRAE---ELETALMEMVKQDNRRQLSARVEQLEQEVSELRRILADKQ 664 (854)
Q Consensus 604 ~lk~El~~ll~e~r~~~lrae---ele~a~~e~~~~d~r~~l~~~~~~le~e~~~~~~~~~~~~ 664 (854)
.|+.+|-+.-+-.|...+.|- ..-..|++-++.+.... +++|+.|+.|+..|.+-|.|..
T Consensus 29 lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~-q~~vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG-QKKVEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554454443331 12233334443333333 7789999999999999887764
Done!