BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041509
         (211 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q28813|RHLA_PANTR RH-like protein IA OS=Pan troglodytes PE=2 SV=2
          Length = 417

 Score = 30.8 bits (68), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 31/114 (27%)

Query: 100 DAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY----NAFRKGSWRS 155
           +A  +LL +F    F   D +LE+ +G++ + Q G        +G+    ++FR+ SW S
Sbjct: 21  EAALILLFYF----FTQYDASLEDQKGLVASYQVGQDLTVMAAIGFGFLTSSFRRHSWSS 76

Query: 156 SGSKSQLLPIGEGLLVTRIAAASANKKSHWIVKVDKCTGEEHVFRVRFPQGKQI 209
                 +L +G                  W + +D        F  +FP GK +
Sbjct: 77  VAFSLFMLALGV----------------QWAILLDG-------FLSQFPPGKVV 107


>sp|Q28814|RHLR_PANTR RH-like protein IIR OS=Pan troglodytes PE=2 SV=2
          Length = 417

 Score = 30.4 bits (67), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 31/114 (27%)

Query: 100 DAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY----NAFRKGSWRS 155
           +A  +LL +F    F   D +LE+ +G++ + Q G        +G+    ++FR+ SW S
Sbjct: 21  EAALILLFYF----FTQYDASLEDQKGLVASYQVGQDLTVMAAIGFGFLTSSFRRHSWSS 76

Query: 156 SGSKSQLLPIGEGLLVTRIAAASANKKSHWIVKVDKCTGEEHVFRVRFPQGKQI 209
                 +L +G                  W + +D        F  +FP GK +
Sbjct: 77  VAFSLFMLALGV----------------QWAILLDG-------FLSQFPPGKVV 107


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.130    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,853,217
Number of Sequences: 539616
Number of extensions: 2676026
Number of successful extensions: 6937
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6935
Number of HSP's gapped (non-prelim): 9
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)