Query 041509
Match_columns 211
No_of_seqs 217 out of 1709
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:54:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07279 DUF1442: Protein of u 100.0 3.2E-40 7E-45 270.8 19.9 196 2-201 3-218 (218)
2 PF01596 Methyltransf_3: O-met 100.0 6.8E-37 1.5E-41 253.3 14.3 152 21-175 26-205 (205)
3 COG4122 Predicted O-methyltran 100.0 4.2E-35 9.1E-40 243.7 18.9 150 23-175 42-218 (219)
4 PLN02589 caffeoyl-CoA O-methyl 100.0 3.4E-34 7.4E-39 243.1 20.0 151 23-176 62-247 (247)
5 PLN02476 O-methyltransferase 100.0 8.2E-34 1.8E-38 244.0 19.7 151 22-175 100-278 (278)
6 PLN02781 Probable caffeoyl-CoA 100.0 2.9E-31 6.4E-36 223.8 20.1 150 23-175 51-233 (234)
7 KOG1663 O-methyltransferase [S 100.0 1.2E-29 2.5E-34 210.0 16.9 152 21-175 54-237 (237)
8 COG2518 Pcm Protein-L-isoaspar 99.7 3.3E-17 7.2E-22 135.1 10.1 130 7-146 36-170 (209)
9 PRK13942 protein-L-isoaspartat 99.7 6.7E-17 1.4E-21 134.4 11.4 130 10-145 43-176 (212)
10 COG2519 GCD14 tRNA(1-methylade 99.7 1.7E-16 3.8E-21 133.8 13.1 133 9-148 63-197 (256)
11 PF12847 Methyltransf_18: Meth 99.7 9.6E-17 2.1E-21 118.9 9.8 102 40-145 1-111 (112)
12 PRK13944 protein-L-isoaspartat 99.7 1.7E-16 3.7E-21 131.2 11.6 117 22-144 54-172 (205)
13 PLN03075 nicotianamine synthas 99.7 3.5E-16 7.5E-21 135.8 13.2 117 24-144 108-232 (296)
14 COG2242 CobL Precorrin-6B meth 99.7 2.5E-15 5.5E-20 121.7 13.7 134 34-174 28-170 (187)
15 COG2226 UbiE Methylase involve 99.7 2E-15 4.2E-20 127.5 13.5 117 24-145 35-156 (238)
16 TIGR00080 pimt protein-L-isoas 99.7 1.4E-15 3.1E-20 126.3 12.5 117 22-144 59-176 (215)
17 PRK04457 spermidine synthase; 99.7 3.6E-15 7.9E-20 127.9 15.1 113 31-148 57-178 (262)
18 PRK00107 gidB 16S rRNA methylt 99.7 3.3E-15 7.2E-20 122.2 14.2 132 9-147 2-147 (187)
19 PRK00377 cbiT cobalt-precorrin 99.7 4E-15 8.7E-20 122.2 14.5 106 36-143 36-143 (198)
20 PF01135 PCMT: Protein-L-isoas 99.6 2.1E-16 4.6E-21 131.3 6.7 131 10-146 39-173 (209)
21 TIGR02469 CbiT precorrin-6Y C5 99.6 4.6E-15 1E-19 111.2 13.0 109 32-143 11-120 (124)
22 PF08704 GCD14: tRNA methyltra 99.6 2.2E-15 4.7E-20 128.1 11.6 130 10-143 10-144 (247)
23 PRK07402 precorrin-6B methylas 99.6 1.7E-14 3.6E-19 118.2 15.1 121 22-146 22-143 (196)
24 PF01209 Ubie_methyltran: ubiE 99.6 1.6E-15 3.6E-20 128.0 9.3 119 28-149 35-157 (233)
25 TIGR00138 gidB 16S rRNA methyl 99.6 5.1E-15 1.1E-19 120.4 11.8 102 37-145 39-142 (181)
26 PRK08287 cobalt-precorrin-6Y C 99.6 2.1E-14 4.6E-19 116.6 14.1 113 26-144 17-130 (187)
27 PRK00312 pcm protein-L-isoaspa 99.6 2.4E-14 5.3E-19 118.4 11.7 115 22-145 60-175 (212)
28 PF13578 Methyltransf_24: Meth 99.6 2.6E-15 5.5E-20 111.1 5.2 99 45-146 1-105 (106)
29 TIGR02752 MenG_heptapren 2-hep 99.6 8.8E-14 1.9E-18 116.0 13.6 115 30-147 35-153 (231)
30 PRK00121 trmB tRNA (guanine-N( 99.5 7.4E-14 1.6E-18 115.2 11.4 133 9-146 6-157 (202)
31 PRK11036 putative S-adenosyl-L 99.5 1.6E-13 3.4E-18 116.8 13.6 110 28-144 34-148 (255)
32 PLN02233 ubiquinone biosynthes 99.5 1.7E-13 3.8E-18 117.3 13.5 114 30-146 63-183 (261)
33 PF13847 Methyltransf_31: Meth 99.5 8.4E-14 1.8E-18 109.3 10.5 106 39-147 2-112 (152)
34 PRK01683 trans-aconitate 2-met 99.5 2.6E-13 5.6E-18 115.2 14.3 126 1-144 1-129 (258)
35 PRK15128 23S rRNA m(5)C1962 me 99.5 1.1E-13 2.4E-18 125.1 12.5 105 39-147 219-341 (396)
36 PRK15451 tRNA cmo(5)U34 methyl 99.5 6.6E-13 1.4E-17 112.7 15.3 107 39-149 55-168 (247)
37 PRK10909 rsmD 16S rRNA m(2)G96 99.5 7.5E-13 1.6E-17 109.3 15.0 112 31-146 44-160 (199)
38 PRK13943 protein-L-isoaspartat 99.5 6E-13 1.3E-17 117.3 14.2 119 22-146 62-181 (322)
39 PRK11783 rlmL 23S rRNA m(2)G24 99.5 3.2E-13 7E-18 130.0 13.1 106 37-146 535-657 (702)
40 PF05175 MTS: Methyltransferas 99.5 2.4E-13 5.2E-18 109.2 10.3 111 30-146 21-141 (170)
41 PF13659 Methyltransf_26: Meth 99.5 3.8E-13 8.2E-18 100.4 10.6 100 42-145 2-115 (117)
42 PRK14902 16S rRNA methyltransf 99.5 4.5E-13 9.8E-18 122.7 13.1 126 22-150 232-384 (444)
43 PLN02244 tocopherol O-methyltr 99.5 4.8E-13 1E-17 118.6 12.7 103 39-146 117-224 (340)
44 TIGR03533 L3_gln_methyl protei 99.5 9.2E-13 2E-17 114.2 13.9 115 24-143 101-249 (284)
45 PRK14901 16S rRNA methyltransf 99.5 1.2E-12 2.5E-17 119.7 15.2 151 23-176 235-432 (434)
46 COG4123 Predicted O-methyltran 99.5 5.9E-13 1.3E-17 112.8 12.1 116 27-145 31-170 (248)
47 TIGR00537 hemK_rel_arch HemK-r 99.5 1.1E-12 2.3E-17 105.9 13.1 116 26-149 5-144 (179)
48 PRK00811 spermidine synthase; 99.5 9.6E-13 2.1E-17 114.0 13.1 103 38-143 74-189 (283)
49 TIGR00740 methyltransferase, p 99.5 2.1E-12 4.5E-17 108.8 14.4 106 40-149 53-165 (239)
50 PRK01581 speE spermidine synth 99.5 1.2E-12 2.7E-17 116.4 13.5 107 36-145 146-268 (374)
51 PRK04266 fibrillarin; Provisio 99.4 1.2E-12 2.6E-17 110.1 12.0 112 29-144 59-175 (226)
52 PRK14903 16S rRNA methyltransf 99.4 1.9E-12 4.1E-17 118.3 14.3 126 23-151 220-372 (431)
53 COG1092 Predicted SAM-dependen 99.4 8.3E-13 1.8E-17 118.8 11.3 106 39-148 216-339 (393)
54 TIGR00446 nop2p NOL1/NOP2/sun 99.4 3.3E-12 7.1E-17 109.6 14.5 125 24-151 55-205 (264)
55 TIGR00091 tRNA (guanine-N(7)-) 99.4 1.8E-12 3.9E-17 106.2 12.3 105 39-146 15-133 (194)
56 PRK11873 arsM arsenite S-adeno 99.4 1.5E-12 3.3E-17 111.5 12.4 108 36-146 73-184 (272)
57 PRK14904 16S rRNA methyltransf 99.4 1.6E-12 3.4E-17 119.2 13.0 125 22-151 232-383 (445)
58 PRK11805 N5-glutamine S-adenos 99.4 3.2E-12 7E-17 112.0 14.0 115 24-143 113-261 (307)
59 PRK14103 trans-aconitate 2-met 99.4 3.6E-12 7.8E-17 108.4 13.5 97 37-144 26-125 (255)
60 PLN02366 spermidine synthase 99.4 4E-12 8.6E-17 111.5 13.5 103 38-143 89-204 (308)
61 PRK10901 16S rRNA methyltransf 99.4 3E-12 6.4E-17 116.8 13.2 126 23-151 227-378 (427)
62 PF08241 Methyltransf_11: Meth 99.4 1.3E-12 2.8E-17 93.0 7.9 92 45-143 1-95 (95)
63 PRK11207 tellurite resistance 99.4 4.3E-12 9.2E-17 104.3 11.6 102 37-145 27-134 (197)
64 PLN02396 hexaprenyldihydroxybe 99.4 4.1E-12 9E-17 112.0 12.2 100 40-145 131-235 (322)
65 TIGR00563 rsmB ribosomal RNA s 99.4 5.2E-12 1.1E-16 115.2 13.0 125 24-151 222-374 (426)
66 PRK03522 rumB 23S rRNA methylu 99.4 8.7E-12 1.9E-16 109.5 13.5 105 37-148 170-277 (315)
67 PTZ00098 phosphoethanolamine N 99.4 5.5E-12 1.2E-16 108.2 11.8 106 36-147 48-158 (263)
68 COG2521 Predicted archaeal met 99.4 8.4E-13 1.8E-17 110.2 6.2 102 36-142 130-242 (287)
69 PRK15001 SAM-dependent 23S rib 99.4 7.4E-12 1.6E-16 112.5 12.4 115 29-148 217-343 (378)
70 PRK00517 prmA ribosomal protei 99.4 1.4E-11 3.1E-16 104.7 13.2 104 29-145 107-213 (250)
71 COG4106 Tam Trans-aconitate me 99.4 4.8E-12 1E-16 104.7 9.8 104 32-144 22-128 (257)
72 TIGR00536 hemK_fam HemK family 99.4 1.9E-11 4.2E-16 105.8 14.1 115 24-143 94-242 (284)
73 TIGR00477 tehB tellurite resis 99.3 9.3E-12 2E-16 102.1 11.2 105 32-145 22-133 (195)
74 PLN02823 spermine synthase 99.3 1.7E-11 3.6E-16 108.7 13.4 103 38-143 101-218 (336)
75 TIGR00479 rumA 23S rRNA (uraci 99.3 1.9E-11 4.2E-16 111.5 14.1 103 38-146 290-397 (431)
76 TIGR00417 speE spermidine synt 99.3 1.9E-11 4.1E-16 105.1 13.3 103 38-143 70-184 (270)
77 PF10672 Methyltrans_SAM: S-ad 99.3 8.4E-12 1.8E-16 108.2 11.1 112 30-148 116-241 (286)
78 smart00828 PKS_MT Methyltransf 99.3 9.8E-12 2.1E-16 103.2 11.1 99 42-145 1-104 (224)
79 PRK14967 putative methyltransf 99.3 2.7E-11 5.8E-16 101.2 13.7 104 39-148 35-162 (223)
80 PRK14968 putative methyltransf 99.3 3.2E-11 7E-16 96.9 13.6 112 29-147 12-150 (188)
81 TIGR00406 prmA ribosomal prote 99.3 2.3E-11 5E-16 105.6 13.6 100 39-145 158-259 (288)
82 PRK08317 hypothetical protein; 99.3 2.7E-11 5.9E-16 100.2 13.0 111 32-145 11-124 (241)
83 PRK13168 rumA 23S rRNA m(5)U19 99.3 3.1E-11 6.8E-16 110.6 14.5 106 37-148 294-403 (443)
84 PLN02336 phosphoethanolamine N 99.3 1.7E-11 3.7E-16 112.9 12.7 106 36-146 262-370 (475)
85 TIGR03534 RF_mod_PrmC protein- 99.3 4.7E-11 1E-15 100.4 14.2 115 26-145 71-217 (251)
86 PRK01544 bifunctional N5-gluta 99.3 2.2E-11 4.7E-16 113.4 12.8 98 41-143 139-267 (506)
87 TIGR02716 C20_methyl_CrtF C-20 99.3 3.6E-11 7.7E-16 104.9 13.3 111 32-149 141-258 (306)
88 PF02353 CMAS: Mycolic acid cy 99.3 1.8E-11 3.9E-16 105.7 11.2 106 32-145 54-166 (273)
89 PRK00216 ubiE ubiquinone/menaq 99.3 5.1E-11 1.1E-15 99.0 13.5 108 37-147 48-160 (239)
90 TIGR01177 conserved hypothetic 99.3 3.6E-11 7.7E-16 106.2 13.1 116 23-145 165-294 (329)
91 PRK06922 hypothetical protein; 99.3 3.3E-11 7.2E-16 113.9 13.5 114 33-149 411-541 (677)
92 PRK10258 biotin biosynthesis p 99.3 2.8E-11 6.1E-16 102.4 11.7 112 24-145 26-140 (251)
93 PRK03612 spermidine synthase; 99.3 3.2E-11 7E-16 112.6 12.8 104 37-143 294-413 (521)
94 TIGR02085 meth_trns_rumB 23S r 99.3 5.6E-11 1.2E-15 106.8 13.9 103 39-147 232-336 (374)
95 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 7.4E-11 1.6E-15 97.0 13.2 107 36-146 35-144 (223)
96 PRK09328 N5-glutamine S-adenos 99.3 8.4E-11 1.8E-15 100.4 13.7 113 26-143 91-236 (275)
97 PRK12335 tellurite resistance 99.3 4.2E-11 9.2E-16 103.8 11.9 101 37-144 117-222 (287)
98 PF05401 NodS: Nodulation prot 99.3 2E-11 4.4E-16 100.0 9.2 101 37-145 40-146 (201)
99 TIGR03704 PrmC_rel_meth putati 99.3 1.3E-10 2.8E-15 99.2 14.5 101 41-146 87-217 (251)
100 COG2230 Cfa Cyclopropane fatty 99.3 7.4E-11 1.6E-15 101.8 13.1 107 31-145 63-176 (283)
101 PRK09489 rsmC 16S ribosomal RN 99.3 5.9E-11 1.3E-15 105.5 12.7 118 26-150 183-308 (342)
102 PF13649 Methyltransf_25: Meth 99.3 1.3E-11 2.9E-16 90.3 7.0 94 44-139 1-101 (101)
103 PRK14966 unknown domain/N5-glu 99.3 9.1E-11 2E-15 106.3 13.5 116 25-143 235-379 (423)
104 TIGR02072 BioC biotin biosynth 99.3 6.1E-11 1.3E-15 98.3 11.5 100 39-145 33-135 (240)
105 PRK14121 tRNA (guanine-N(7)-)- 99.3 1.3E-10 2.8E-15 104.6 14.0 106 38-146 120-236 (390)
106 PRK11705 cyclopropane fatty ac 99.3 1E-10 2.2E-15 105.5 13.5 100 36-145 163-267 (383)
107 TIGR00095 RNA methyltransferas 99.3 2.1E-10 4.5E-15 93.9 14.2 103 38-145 47-158 (189)
108 TIGR03587 Pse_Me-ase pseudamin 99.2 1.4E-10 3.1E-15 96.0 11.9 99 36-145 39-142 (204)
109 PRK05134 bifunctional 3-demeth 99.2 1.9E-10 4.1E-15 96.1 12.8 118 23-145 31-151 (233)
110 PF03602 Cons_hypoth95: Conser 99.2 7.8E-11 1.7E-15 96.1 10.0 110 30-143 31-151 (183)
111 PRK05031 tRNA (uracil-5-)-meth 99.2 2.6E-10 5.7E-15 102.1 14.0 98 42-147 208-322 (362)
112 PRK15068 tRNA mo(5)U34 methylt 99.2 2.2E-10 4.8E-15 101.0 13.3 102 37-144 119-225 (322)
113 PLN02490 MPBQ/MSBQ methyltrans 99.2 2E-10 4.4E-15 101.9 12.0 101 40-146 113-216 (340)
114 PTZ00146 fibrillarin; Provisio 99.2 2.5E-10 5.4E-15 99.1 12.2 104 38-144 130-236 (293)
115 TIGR02143 trmA_only tRNA (urac 99.2 4.6E-10 1E-14 100.2 13.9 99 41-147 198-313 (353)
116 smart00650 rADc Ribosomal RNA 99.2 4.8E-10 1E-14 89.7 12.6 102 35-143 8-111 (169)
117 TIGR01983 UbiG ubiquinone bios 99.2 6.1E-10 1.3E-14 92.2 13.6 115 26-145 27-149 (224)
118 PRK11088 rrmA 23S rRNA methylt 99.2 2.6E-10 5.5E-15 98.0 11.5 96 40-145 85-181 (272)
119 TIGR03840 TMPT_Se_Te thiopurin 99.2 3E-10 6.5E-15 94.7 11.4 99 40-143 34-150 (213)
120 cd02440 AdoMet_MTases S-adenos 99.2 4.9E-10 1.1E-14 79.0 11.0 98 43-144 1-103 (107)
121 TIGR00452 methyltransferase, p 99.2 8.1E-10 1.8E-14 97.2 14.4 118 22-145 98-225 (314)
122 PF08242 Methyltransf_12: Meth 99.2 9.6E-12 2.1E-16 90.5 1.9 94 45-141 1-99 (99)
123 COG2227 UbiG 2-polyprenyl-3-me 99.2 1.4E-10 3E-15 97.4 8.8 114 26-145 42-161 (243)
124 KOG1540 Ubiquinone biosynthesi 99.2 5.1E-10 1.1E-14 94.7 12.2 107 37-145 97-214 (296)
125 TIGR03438 probable methyltrans 99.1 1.8E-09 3.8E-14 94.4 15.6 107 40-148 63-180 (301)
126 COG2264 PrmA Ribosomal protein 99.1 3.9E-10 8.4E-15 98.1 11.2 113 28-149 152-266 (300)
127 COG0421 SpeE Spermidine syntha 99.1 8.1E-10 1.8E-14 95.7 12.9 111 29-143 66-188 (282)
128 COG2890 HemK Methylase of poly 99.1 8.4E-10 1.8E-14 95.6 12.6 118 24-149 92-241 (280)
129 PLN02336 phosphoethanolamine N 99.1 4.7E-10 1E-14 103.4 11.6 110 34-149 31-146 (475)
130 KOG2915 tRNA(1-methyladenosine 99.1 6.5E-10 1.4E-14 94.8 10.7 127 13-143 78-207 (314)
131 PRK13255 thiopurine S-methyltr 99.1 8.3E-10 1.8E-14 92.4 11.2 99 40-143 37-153 (218)
132 PF06325 PrmA: Ribosomal prote 99.1 1.4E-10 3.1E-15 101.0 6.7 101 39-149 160-262 (295)
133 COG0742 N6-adenine-specific me 99.1 2.6E-09 5.7E-14 87.0 13.6 110 30-143 32-152 (187)
134 PRK04338 N(2),N(2)-dimethylgua 99.1 2.5E-09 5.3E-14 96.5 14.1 98 42-144 59-157 (382)
135 PF01564 Spermine_synth: Sperm 99.1 6.6E-10 1.4E-14 94.6 9.8 103 38-143 74-189 (246)
136 COG2813 RsmC 16S RNA G1207 met 99.1 1.4E-09 2.9E-14 94.4 11.6 116 24-146 143-267 (300)
137 PRK11933 yebU rRNA (cytosine-C 99.1 2.4E-09 5.2E-14 98.8 13.7 127 22-150 93-247 (470)
138 TIGR02021 BchM-ChlM magnesium 99.1 2.3E-09 5E-14 89.0 12.2 96 38-143 53-155 (219)
139 PRK11188 rrmJ 23S rRNA methylt 99.1 1.7E-09 3.6E-14 89.9 11.2 96 38-145 49-165 (209)
140 KOG1270 Methyltransferases [Co 99.1 2.6E-10 5.7E-15 96.8 6.4 134 3-145 48-195 (282)
141 PRK07580 Mg-protoporphyrin IX 99.1 2.6E-09 5.7E-14 88.6 12.3 95 39-143 62-163 (230)
142 COG2265 TrmA SAM-dependent met 99.1 2E-09 4.2E-14 98.4 12.3 108 36-149 289-400 (432)
143 COG2263 Predicted RNA methylas 99.1 4.9E-09 1.1E-13 85.3 13.0 119 20-149 22-148 (198)
144 PF13489 Methyltransf_23: Meth 99.0 2.3E-09 5E-14 83.5 10.8 106 25-145 6-115 (161)
145 PF09445 Methyltransf_15: RNA 99.0 7.1E-10 1.5E-14 88.7 7.8 74 42-120 1-78 (163)
146 KOG1661 Protein-L-isoaspartate 99.0 1.3E-09 2.9E-14 89.9 9.2 110 29-143 70-191 (237)
147 TIGR00438 rrmJ cell division p 99.0 2.3E-09 5.1E-14 87.1 10.5 99 34-144 26-145 (188)
148 TIGR00308 TRM1 tRNA(guanine-26 99.0 6.9E-09 1.5E-13 93.3 13.8 100 42-144 46-146 (374)
149 PRK06202 hypothetical protein; 99.0 2.3E-09 5E-14 89.8 9.9 108 30-143 50-164 (232)
150 PRK05785 hypothetical protein; 99.0 4.6E-09 9.9E-14 88.2 11.7 87 40-138 51-140 (226)
151 smart00138 MeTrc Methyltransfe 99.0 1.4E-09 3E-14 93.4 8.3 105 40-146 99-243 (264)
152 KOG4300 Predicted methyltransf 99.0 1.8E-09 3.9E-14 89.0 8.2 129 43-176 79-217 (252)
153 PLN02672 methionine S-methyltr 99.0 8.5E-09 1.8E-13 102.8 14.4 76 41-119 119-211 (1082)
154 KOG2904 Predicted methyltransf 99.0 6.5E-09 1.4E-13 88.9 10.7 124 23-149 125-289 (328)
155 PTZ00338 dimethyladenosine tra 99.0 1.8E-08 3.8E-13 88.0 13.8 94 19-120 14-110 (294)
156 PF02475 Met_10: Met-10+ like- 98.9 3.3E-09 7.2E-14 87.7 8.3 96 38-139 99-196 (200)
157 PHA03412 putative methyltransf 98.9 2.5E-08 5.4E-13 84.3 13.3 117 23-149 34-166 (241)
158 PF02390 Methyltransf_4: Putat 98.9 9.8E-09 2.1E-13 84.5 10.3 101 43-146 20-134 (195)
159 PHA03411 putative methyltransf 98.9 1.7E-08 3.7E-13 87.0 11.7 100 38-146 62-184 (279)
160 COG2520 Predicted methyltransf 98.9 2.3E-08 5E-13 88.6 12.0 116 26-148 174-291 (341)
161 PF03848 TehB: Tellurite resis 98.9 1.4E-08 3.1E-13 83.3 9.7 112 24-143 15-131 (192)
162 PRK14896 ksgA 16S ribosomal RN 98.8 2.1E-08 4.5E-13 85.8 10.1 93 19-120 7-100 (258)
163 PF01170 UPF0020: Putative RNA 98.8 1.1E-07 2.4E-12 77.1 13.4 119 22-143 10-148 (179)
164 PF04989 CmcI: Cephalosporin h 98.8 2.1E-08 4.5E-13 83.0 9.0 121 24-145 16-147 (206)
165 PF10294 Methyltransf_16: Puta 98.8 6.6E-08 1.4E-12 78.0 11.5 106 37-146 42-157 (173)
166 PF05958 tRNA_U5-meth_tr: tRNA 98.8 2.3E-08 5E-13 89.3 9.6 98 42-147 198-312 (352)
167 COG0220 Predicted S-adenosylme 98.8 9.4E-08 2E-12 80.5 12.8 103 41-146 49-165 (227)
168 PLN02585 magnesium protoporphy 98.8 6.9E-08 1.5E-12 85.0 11.9 95 40-145 144-249 (315)
169 TIGR00755 ksgA dimethyladenosi 98.8 1.1E-07 2.3E-12 81.0 12.6 104 20-132 8-115 (253)
170 PRK00274 ksgA 16S ribosomal RN 98.8 1.2E-07 2.7E-12 81.6 13.1 102 23-132 25-126 (272)
171 KOG3191 Predicted N6-DNA-methy 98.8 1.9E-07 4E-12 75.7 12.2 102 38-143 41-166 (209)
172 PF05724 TPMT: Thiopurine S-me 98.8 4.2E-08 9.1E-13 82.1 8.8 112 23-140 21-150 (218)
173 PRK00050 16S rRNA m(4)C1402 me 98.7 7.9E-08 1.7E-12 83.9 10.7 89 30-122 10-101 (296)
174 COG0144 Sun tRNA and rRNA cyto 98.7 1.9E-07 4.2E-12 83.5 12.8 127 23-151 139-294 (355)
175 PF08003 Methyltransf_9: Prote 98.7 1.7E-07 3.6E-12 81.7 11.7 114 29-150 105-223 (315)
176 TIGR02081 metW methionine bios 98.7 8.7E-08 1.9E-12 78.2 8.5 87 40-136 13-103 (194)
177 PRK13256 thiopurine S-methyltr 98.7 2.2E-07 4.7E-12 78.2 10.8 115 24-144 28-162 (226)
178 KOG2187 tRNA uracil-5-methyltr 98.7 7.2E-08 1.6E-12 88.6 8.3 117 28-149 367-494 (534)
179 PRK00536 speE spermidine synth 98.7 3.5E-07 7.7E-12 78.5 12.1 97 36-143 68-169 (262)
180 PF00891 Methyltransf_2: O-met 98.6 1.1E-07 2.4E-12 80.0 8.3 102 37-151 97-205 (241)
181 PRK11727 23S rRNA mA1618 methy 98.6 5.7E-07 1.2E-11 79.4 12.1 78 40-120 114-198 (321)
182 KOG1271 Methyltransferases [Ge 98.6 3.7E-07 8E-12 74.2 9.8 108 38-149 65-185 (227)
183 PF03059 NAS: Nicotianamine sy 98.6 4.3E-07 9.4E-12 78.5 10.5 101 40-143 120-228 (276)
184 KOG1499 Protein arginine N-met 98.6 2.9E-07 6.2E-12 81.2 9.5 97 38-141 58-163 (346)
185 KOG2899 Predicted methyltransf 98.6 3.5E-07 7.5E-12 77.2 9.4 110 31-143 48-207 (288)
186 KOG3010 Methyltransferase [Gen 98.6 1E-07 2.2E-12 80.2 6.1 110 29-144 21-135 (261)
187 COG3963 Phospholipid N-methylt 98.6 9.6E-07 2.1E-11 70.8 10.9 112 28-145 36-156 (194)
188 PLN02232 ubiquinone biosynthes 98.5 3.3E-07 7.2E-12 72.8 8.1 75 71-146 1-82 (160)
189 COG4976 Predicted methyltransf 98.5 4.5E-08 9.8E-13 82.0 2.5 116 23-148 109-228 (287)
190 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.5 8.7E-07 1.9E-11 76.9 10.6 127 23-151 68-225 (283)
191 PF05185 PRMT5: PRMT5 arginine 98.5 2.5E-07 5.5E-12 85.1 7.4 99 41-143 187-294 (448)
192 COG1041 Predicted DNA modifica 98.5 7.9E-07 1.7E-11 78.7 10.2 117 23-146 180-311 (347)
193 PF07021 MetW: Methionine bios 98.5 7.8E-07 1.7E-11 72.8 9.3 92 31-134 6-101 (193)
194 COG0030 KsgA Dimethyladenosine 98.4 8.7E-07 1.9E-11 75.9 8.5 94 19-120 8-104 (259)
195 PRK10742 putative methyltransf 98.4 1.8E-06 4E-11 73.4 9.9 88 29-121 75-174 (250)
196 COG4262 Predicted spermidine s 98.4 3E-06 6.5E-11 75.4 11.5 135 39-176 288-453 (508)
197 KOG2361 Predicted methyltransf 98.4 4.6E-07 1E-11 76.4 6.0 105 40-145 71-183 (264)
198 PRK04148 hypothetical protein; 98.4 3.1E-06 6.7E-11 65.7 10.0 103 28-143 4-107 (134)
199 KOG0820 Ribosomal RNA adenine 98.4 1.9E-06 4.1E-11 73.9 8.9 88 24-119 42-131 (315)
200 PRK01544 bifunctional N5-gluta 98.4 4.9E-06 1.1E-10 77.8 12.5 105 39-146 346-463 (506)
201 KOG3420 Predicted RNA methylas 98.3 1.2E-06 2.6E-11 68.8 6.3 111 19-134 23-142 (185)
202 KOG2730 Methylase [General fun 98.3 1.6E-06 3.5E-11 72.3 7.1 94 23-121 75-175 (263)
203 PF02527 GidB: rRNA small subu 98.3 3.7E-06 8E-11 68.7 9.2 96 43-145 51-148 (184)
204 PF05891 Methyltransf_PK: AdoM 98.3 1.4E-06 3E-11 72.6 6.2 117 30-151 40-167 (218)
205 KOG1500 Protein arginine N-met 98.3 3.1E-06 6.7E-11 74.7 8.5 98 38-142 175-279 (517)
206 KOG1541 Predicted protein carb 98.3 2E-06 4.3E-11 71.9 6.6 106 29-143 38-158 (270)
207 PF04816 DUF633: Family of unk 98.3 6E-06 1.3E-10 68.6 9.3 99 44-146 1-102 (205)
208 KOG1709 Guanidinoacetate methy 98.2 4.5E-05 9.8E-10 63.6 13.7 108 39-151 100-211 (271)
209 PF02384 N6_Mtase: N-6 DNA Met 98.2 4.7E-06 1E-10 72.7 8.3 128 21-149 27-189 (311)
210 COG4076 Predicted RNA methylas 98.2 4.9E-06 1.1E-10 68.0 7.3 93 42-142 34-132 (252)
211 PF00398 RrnaAD: Ribosomal RNA 98.1 2E-05 4.2E-10 67.6 9.6 109 19-133 8-119 (262)
212 PRK11783 rlmL 23S rRNA m(2)G24 98.1 3.6E-05 7.9E-10 74.6 12.4 96 24-120 173-312 (702)
213 COG0357 GidB Predicted S-adeno 98.1 1.6E-05 3.5E-10 66.4 8.1 97 41-143 68-166 (215)
214 TIGR00478 tly hemolysin TlyA f 98.0 4.2E-05 9E-10 64.5 9.5 92 39-143 74-169 (228)
215 PF13679 Methyltransf_32: Meth 98.0 5.1E-05 1.1E-09 59.0 9.2 85 29-116 10-104 (141)
216 PF12147 Methyltransf_20: Puta 98.0 0.00014 3E-09 63.3 12.5 117 28-146 123-249 (311)
217 TIGR01444 fkbM_fam methyltrans 98.0 1.9E-05 4.2E-10 60.6 6.5 57 43-102 1-58 (143)
218 TIGR00006 S-adenosyl-methyltra 97.9 0.00011 2.4E-09 64.5 11.2 88 31-122 12-103 (305)
219 PF08123 DOT1: Histone methyla 97.9 0.00019 4.1E-09 59.6 11.5 118 29-151 32-163 (205)
220 PF01269 Fibrillarin: Fibrilla 97.8 0.0002 4.4E-09 60.0 10.2 101 38-145 71-178 (229)
221 PHA01634 hypothetical protein 97.8 6.7E-05 1.5E-09 57.7 6.4 73 39-120 27-101 (156)
222 PF05711 TylF: Macrocin-O-meth 97.8 0.00013 2.9E-09 62.2 8.8 127 23-151 53-217 (248)
223 TIGR02987 met_A_Alw26 type II 97.8 0.00023 5E-09 66.7 11.1 99 20-119 4-120 (524)
224 PF01728 FtsJ: FtsJ-like methy 97.8 0.00011 2.3E-09 59.1 7.4 92 40-143 23-137 (181)
225 PF09243 Rsm22: Mitochondrial 97.7 0.00025 5.4E-09 61.3 9.9 109 37-151 30-145 (274)
226 COG2384 Predicted SAM-dependen 97.7 0.0004 8.6E-09 58.0 10.6 102 41-146 17-121 (226)
227 PRK10611 chemotaxis methyltran 97.7 0.00014 3.1E-09 63.4 8.3 121 24-145 98-262 (287)
228 KOG1122 tRNA and rRNA cytosine 97.7 0.00013 2.8E-09 66.1 7.3 114 34-150 235-376 (460)
229 PF01739 CheR: CheR methyltran 97.7 0.0001 2.2E-09 60.8 6.0 105 40-146 31-176 (196)
230 COG0293 FtsJ 23S rRNA methylas 97.6 0.00049 1.1E-08 57.1 9.4 93 39-143 44-157 (205)
231 PRK01747 mnmC bifunctional tRN 97.6 0.00059 1.3E-08 65.7 11.2 101 41-142 58-203 (662)
232 PF06080 DUF938: Protein of un 97.6 0.00035 7.5E-09 57.9 8.2 104 43-150 28-145 (204)
233 COG3897 Predicted methyltransf 97.6 0.00017 3.6E-09 59.4 5.9 100 38-145 77-179 (218)
234 KOG1562 Spermidine synthase [A 97.5 0.00033 7.1E-09 61.0 7.7 106 35-143 116-234 (337)
235 TIGR03439 methyl_EasF probable 97.5 0.0066 1.4E-07 53.7 16.1 108 40-148 76-200 (319)
236 COG0500 SmtA SAM-dependent met 97.5 0.0012 2.6E-08 47.8 9.7 100 44-147 52-157 (257)
237 KOG3178 Hydroxyindole-O-methyl 97.5 0.00068 1.5E-08 60.1 9.7 98 42-151 179-281 (342)
238 PF04445 SAM_MT: Putative SAM- 97.5 0.00024 5.1E-09 60.1 6.3 86 30-120 63-160 (234)
239 COG1352 CheR Methylase of chem 97.5 0.00078 1.7E-08 58.2 9.3 104 41-146 97-242 (268)
240 COG0116 Predicted N6-adenine-s 97.5 0.0022 4.7E-08 57.8 12.2 118 24-143 175-342 (381)
241 PF03291 Pox_MCEL: mRNA cappin 97.5 0.00058 1.3E-08 60.7 8.3 99 40-143 62-184 (331)
242 PF02005 TRM: N2,N2-dimethylgu 97.4 0.00079 1.7E-08 60.9 8.9 101 41-144 50-153 (377)
243 PF05219 DREV: DREV methyltran 97.4 0.0019 4.2E-08 55.3 10.4 93 39-145 93-188 (265)
244 COG1064 AdhP Zn-dependent alco 97.4 0.0021 4.5E-08 57.3 10.8 99 36-147 162-261 (339)
245 COG1867 TRM1 N2,N2-dimethylgua 97.4 0.0022 4.7E-08 57.4 10.6 99 41-143 53-152 (380)
246 PF06962 rRNA_methylase: Putat 97.4 0.00057 1.2E-08 53.5 6.2 76 69-144 1-91 (140)
247 PF01795 Methyltransf_5: MraW 97.3 0.0014 3.1E-08 57.6 8.6 88 31-122 12-104 (310)
248 COG3510 CmcI Cephalosporin hyd 97.3 0.0029 6.3E-08 52.1 9.5 120 24-148 53-183 (237)
249 COG1063 Tdh Threonine dehydrog 97.2 0.007 1.5E-07 53.9 12.2 99 39-145 167-269 (350)
250 PRK11760 putative 23S rRNA C24 97.2 0.0039 8.5E-08 55.6 10.1 86 39-137 210-295 (357)
251 COG1889 NOP1 Fibrillarin-like 97.1 0.0048 1E-07 51.2 9.6 105 37-145 73-180 (231)
252 COG0286 HsdM Type I restrictio 97.1 0.0089 1.9E-07 55.9 12.4 131 20-151 166-334 (489)
253 COG0275 Predicted S-adenosylme 97.1 0.0072 1.6E-07 52.9 10.7 85 37-123 20-108 (314)
254 KOG1975 mRNA cap methyltransfe 97.0 0.0025 5.5E-08 56.2 7.6 100 39-142 116-234 (389)
255 PF05148 Methyltransf_8: Hypot 96.9 0.0051 1.1E-07 51.3 8.0 114 10-145 41-158 (219)
256 KOG2198 tRNA cytosine-5-methyl 96.9 0.0061 1.3E-07 54.6 8.9 114 37-151 152-302 (375)
257 KOG2352 Predicted spermine/spe 96.9 0.0012 2.6E-08 60.9 4.6 104 42-150 297-419 (482)
258 COG1189 Predicted rRNA methyla 96.8 0.011 2.3E-07 50.1 9.5 98 38-143 77-176 (245)
259 PF03141 Methyltransf_29: Puta 96.7 0.0011 2.4E-08 61.3 3.2 100 39-146 116-220 (506)
260 PF00107 ADH_zinc_N: Zinc-bind 96.7 0.0041 8.8E-08 46.6 5.6 87 51-145 1-89 (130)
261 KOG1501 Arginine N-methyltrans 96.7 0.0062 1.4E-07 55.8 7.5 58 43-104 69-128 (636)
262 cd00315 Cyt_C5_DNA_methylase C 96.7 0.012 2.6E-07 50.8 9.1 94 43-148 2-113 (275)
263 KOG2940 Predicted methyltransf 96.7 0.0075 1.6E-07 51.1 7.4 95 42-142 74-171 (325)
264 KOG1227 Putative methyltransfe 96.6 0.0012 2.7E-08 57.6 2.4 102 41-149 195-301 (351)
265 PF05971 Methyltransf_10: Prot 96.6 0.0095 2.1E-07 52.2 7.9 114 3-121 44-187 (299)
266 KOG3115 Methyltransferase-like 96.6 0.011 2.4E-07 49.1 7.6 146 23-171 39-215 (249)
267 COG5459 Predicted rRNA methyla 96.5 0.0032 6.9E-08 56.2 4.4 140 8-149 81-229 (484)
268 KOG1253 tRNA methyltransferase 96.5 0.0036 7.7E-08 57.9 4.8 110 32-144 101-215 (525)
269 PF07091 FmrO: Ribosomal RNA m 96.4 0.021 4.5E-07 48.8 8.7 109 5-118 66-178 (251)
270 KOG1269 SAM-dependent methyltr 96.4 0.0072 1.6E-07 54.4 6.0 101 38-143 108-213 (364)
271 KOG0024 Sorbitol dehydrogenase 96.3 0.041 8.9E-07 48.7 9.8 102 36-146 165-274 (354)
272 PRK11524 putative methyltransf 96.2 0.012 2.7E-07 50.9 6.4 55 92-146 7-81 (284)
273 KOG1596 Fibrillarin and relate 96.2 0.013 2.7E-07 50.1 5.8 105 37-144 153-260 (317)
274 PF05430 Methyltransf_30: S-ad 96.1 0.0067 1.5E-07 46.4 3.8 49 93-141 32-86 (124)
275 PRK13699 putative methylase; P 96.1 0.011 2.4E-07 49.7 5.4 51 94-144 2-71 (227)
276 cd08283 FDH_like_1 Glutathione 96.1 0.084 1.8E-06 47.3 11.4 105 36-145 180-306 (386)
277 PF07942 N2227: N2227-like pro 96.1 0.06 1.3E-06 46.6 9.8 97 40-142 56-199 (270)
278 KOG3201 Uncharacterized conser 96.0 0.0057 1.2E-07 49.1 2.8 101 39-143 28-138 (201)
279 PRK09880 L-idonate 5-dehydroge 95.9 0.11 2.3E-06 45.7 10.8 99 39-145 168-266 (343)
280 PF01861 DUF43: Protein of unk 95.9 0.27 5.9E-06 41.8 12.6 116 20-141 21-144 (243)
281 COG4798 Predicted methyltransf 95.8 0.026 5.6E-07 46.7 6.0 118 29-151 38-172 (238)
282 PLN03154 putative allyl alcoho 95.8 0.18 3.9E-06 44.6 11.7 100 36-144 154-257 (348)
283 cd08294 leukotriene_B4_DH_like 95.7 0.19 4.2E-06 43.1 11.5 101 35-145 138-241 (329)
284 cd08254 hydroxyacyl_CoA_DH 6-h 95.6 0.17 3.7E-06 43.5 10.8 99 38-145 163-263 (338)
285 PF04672 Methyltransf_19: S-ad 95.6 0.24 5.2E-06 42.8 11.4 109 36-146 64-191 (267)
286 KOG2793 Putative N2,N2-dimethy 95.5 0.076 1.6E-06 45.4 8.1 100 40-145 86-199 (248)
287 PF02254 TrkA_N: TrkA-N domain 95.5 0.087 1.9E-06 38.7 7.6 108 50-164 4-116 (116)
288 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.5 0.035 7.6E-07 47.7 6.0 102 39-145 55-199 (256)
289 KOG3045 Predicted RNA methylas 95.4 0.17 3.7E-06 43.7 9.8 114 8-145 147-264 (325)
290 cd08293 PTGR2 Prostaglandin re 95.4 0.27 5.9E-06 42.7 11.5 94 42-144 156-253 (345)
291 TIGR02825 B4_12hDH leukotriene 95.4 0.33 7.1E-06 42.0 12.0 100 35-144 133-236 (325)
292 cd08238 sorbose_phosphate_red 95.3 0.34 7.3E-06 43.8 12.2 102 39-144 174-287 (410)
293 KOG2360 Proliferation-associat 95.3 0.019 4.2E-07 51.7 3.8 95 23-119 196-292 (413)
294 PRK09424 pntA NAD(P) transhydr 95.1 0.22 4.8E-06 46.8 10.6 98 38-142 162-282 (509)
295 cd08295 double_bond_reductase_ 95.1 0.47 1E-05 41.3 12.1 100 36-144 147-250 (338)
296 COG0604 Qor NADPH:quinone redu 95.1 0.37 8E-06 42.6 11.4 103 36-148 138-244 (326)
297 cd08281 liver_ADH_like1 Zinc-d 95.1 0.28 6.1E-06 43.5 10.7 99 38-145 189-290 (371)
298 PF00145 DNA_methylase: C-5 cy 95.0 0.13 2.8E-06 44.3 8.1 93 43-148 2-112 (335)
299 PF04378 RsmJ: Ribosomal RNA s 94.9 0.17 3.7E-06 43.2 8.5 119 24-149 42-168 (245)
300 PF01555 N6_N4_Mtase: DNA meth 94.9 0.086 1.9E-06 42.8 6.5 43 38-85 189-231 (231)
301 PF03721 UDPG_MGDP_dh_N: UDP-g 94.9 0.023 5.1E-07 46.2 3.1 95 51-151 7-125 (185)
302 TIGR03366 HpnZ_proposed putati 94.8 0.76 1.6E-05 39.1 12.4 96 39-145 119-218 (280)
303 cd05188 MDR Medium chain reduc 94.8 0.66 1.4E-05 38.1 11.7 98 39-145 133-232 (271)
304 PF03807 F420_oxidored: NADP o 94.6 0.16 3.4E-06 36.1 6.5 82 51-143 6-91 (96)
305 KOG4589 Cell division protein 94.6 0.27 5.8E-06 40.6 8.3 93 39-143 68-182 (232)
306 cd08230 glucose_DH Glucose deh 94.5 0.45 9.7E-06 41.9 10.5 95 39-145 171-269 (355)
307 PF02558 ApbA: Ketopantoate re 94.4 0.12 2.6E-06 39.8 5.8 97 52-149 6-105 (151)
308 TIGR03451 mycoS_dep_FDH mycoth 94.3 0.64 1.4E-05 41.0 10.9 100 37-145 173-276 (358)
309 PRK11064 wecC UDP-N-acetyl-D-m 94.2 0.25 5.4E-06 45.2 8.4 100 42-151 4-124 (415)
310 COG1062 AdhC Zn-dependent alco 94.2 0.8 1.7E-05 41.0 11.1 97 37-144 182-284 (366)
311 TIGR03201 dearomat_had 6-hydro 94.0 1.2 2.5E-05 39.2 12.1 100 38-145 164-272 (349)
312 PRK09496 trkA potassium transp 94.0 0.94 2E-05 41.2 11.7 97 41-144 231-330 (453)
313 PF05050 Methyltransf_21: Meth 93.9 0.093 2E-06 40.5 4.3 40 46-86 1-42 (167)
314 cd08239 THR_DH_like L-threonin 93.9 1.1 2.4E-05 38.9 11.5 99 37-145 160-262 (339)
315 cd08237 ribitol-5-phosphate_DH 93.8 0.97 2.1E-05 39.7 11.1 93 39-145 162-256 (341)
316 PRK10309 galactitol-1-phosphat 93.8 1.1 2.3E-05 39.2 11.3 100 38-145 158-260 (347)
317 TIGR00675 dcm DNA-methyltransf 93.7 0.45 9.8E-06 41.8 8.8 93 44-148 1-110 (315)
318 PRK11524 putative methyltransf 93.7 0.21 4.5E-06 43.3 6.4 55 29-88 195-251 (284)
319 PRK10867 signal recognition pa 93.5 0.56 1.2E-05 43.3 9.3 104 41-147 100-224 (433)
320 PLN02827 Alcohol dehydrogenase 93.4 1.3 2.7E-05 39.7 11.3 99 37-144 190-294 (378)
321 TIGR02822 adh_fam_2 zinc-bindi 93.4 1.9 4.1E-05 37.7 12.2 92 37-145 162-254 (329)
322 cd08285 NADP_ADH NADP(H)-depen 93.3 2 4.3E-05 37.5 12.2 101 36-144 162-265 (351)
323 KOG1099 SAM-dependent methyltr 93.3 0.25 5.5E-06 42.0 6.1 91 41-142 42-160 (294)
324 cd08243 quinone_oxidoreductase 93.3 2.2 4.8E-05 36.0 12.2 97 38-145 140-238 (320)
325 cd08233 butanediol_DH_like (2R 93.2 1.6 3.5E-05 38.1 11.5 101 37-145 169-272 (351)
326 PLN02740 Alcohol dehydrogenase 93.1 1.5 3.3E-05 39.0 11.4 101 36-145 194-300 (381)
327 PF02636 Methyltransf_28: Puta 93.1 0.38 8.2E-06 40.8 7.1 47 41-88 19-71 (252)
328 cd08291 ETR_like_1 2-enoyl thi 93.1 2.2 4.7E-05 36.8 12.0 87 50-145 154-242 (324)
329 cd05278 FDH_like Formaldehyde 92.9 1.7 3.7E-05 37.6 11.2 100 37-144 164-266 (347)
330 TIGR00518 alaDH alanine dehydr 92.9 1.3 2.8E-05 40.0 10.6 102 40-151 166-271 (370)
331 cd08261 Zn_ADH7 Alcohol dehydr 92.8 2.7 5.8E-05 36.4 12.2 101 36-145 155-258 (337)
332 TIGR02818 adh_III_F_hyde S-(hy 92.7 2.3 5.1E-05 37.7 12.0 100 37-145 182-287 (368)
333 TIGR00064 ftsY signal recognit 92.7 1.2 2.7E-05 38.3 9.9 105 41-147 72-201 (272)
334 PF01408 GFO_IDH_MocA: Oxidore 92.7 2.9 6.3E-05 30.5 11.5 93 43-148 2-95 (120)
335 cd08300 alcohol_DH_class_III c 92.7 2.7 5.8E-05 37.2 12.3 100 37-145 183-288 (368)
336 KOG2651 rRNA adenine N-6-methy 92.6 0.42 9E-06 43.4 6.8 53 29-85 142-194 (476)
337 PF07015 VirC1: VirC1 protein; 92.6 0.54 1.2E-05 39.8 7.1 71 51-121 12-93 (231)
338 PRK09422 ethanol-active dehydr 92.5 3.6 7.8E-05 35.5 12.6 102 36-145 158-261 (338)
339 COG0677 WecC UDP-N-acetyl-D-ma 92.3 0.75 1.6E-05 42.0 8.1 95 50-151 15-133 (436)
340 PF11599 AviRa: RRNA methyltra 92.2 0.2 4.3E-06 42.2 4.0 49 39-88 50-98 (246)
341 TIGR00959 ffh signal recogniti 92.2 1.3 2.7E-05 40.9 9.7 105 41-147 99-223 (428)
342 TIGR01202 bchC 2-desacetyl-2-h 92.1 1.4 3E-05 38.2 9.5 88 39-145 143-231 (308)
343 PRK13699 putative methylase; P 92.1 0.47 1E-05 39.8 6.3 54 30-88 151-206 (227)
344 PRK12921 2-dehydropantoate 2-r 92.0 0.76 1.6E-05 39.5 7.7 102 43-149 2-106 (305)
345 cd08301 alcohol_DH_plants Plan 91.9 3.3 7.2E-05 36.5 11.9 102 36-145 183-289 (369)
346 PRK06522 2-dehydropantoate 2-r 91.8 1.3 2.8E-05 37.9 8.9 100 43-149 2-104 (304)
347 cd05285 sorbitol_DH Sorbitol d 91.8 3.9 8.3E-05 35.6 12.0 100 36-144 158-264 (343)
348 PF02153 PDH: Prephenate dehyd 91.8 0.49 1.1E-05 40.4 6.2 72 67-150 11-82 (258)
349 PRK07417 arogenate dehydrogena 91.7 0.85 1.8E-05 39.2 7.6 88 44-146 3-90 (279)
350 cd05286 QOR2 Quinone oxidoredu 91.6 3.7 8E-05 34.3 11.4 100 36-145 132-235 (320)
351 PRK09496 trkA potassium transp 91.5 2.7 5.9E-05 38.2 11.1 93 43-143 2-97 (453)
352 COG4301 Uncharacterized conser 91.5 5.5 0.00012 34.4 12.0 126 23-149 57-197 (321)
353 cd08292 ETR_like_2 2-enoyl thi 91.4 4.9 0.00011 34.2 12.1 100 36-145 135-238 (324)
354 cd05288 PGDH Prostaglandin deh 91.3 3.6 7.9E-05 35.2 11.2 99 38-145 143-244 (329)
355 KOG0822 Protein kinase inhibit 91.1 0.43 9.4E-06 45.0 5.3 97 41-139 368-472 (649)
356 TIGR00692 tdh L-threonine 3-de 91.0 6.6 0.00014 34.0 12.7 98 39-145 160-261 (340)
357 cd08263 Zn_ADH10 Alcohol dehyd 91.0 2.8 6.1E-05 36.9 10.5 98 39-145 186-287 (367)
358 COG4017 Uncharacterized protei 91.0 0.94 2E-05 37.6 6.7 119 6-146 4-129 (254)
359 PRK05808 3-hydroxybutyryl-CoA 91.0 0.42 9.1E-06 41.0 5.0 94 43-147 5-118 (282)
360 PLN02514 cinnamyl-alcohol dehy 90.8 5.7 0.00012 35.0 12.2 97 39-145 179-275 (357)
361 PRK10416 signal recognition pa 90.8 1.8 3.9E-05 38.2 8.9 105 41-147 114-243 (318)
362 PRK14974 cell division protein 90.7 3.1 6.7E-05 37.2 10.3 104 41-146 140-262 (336)
363 cd08277 liver_alcohol_DH_like 90.6 6 0.00013 34.9 12.2 100 37-145 181-286 (365)
364 PRK05708 2-dehydropantoate 2-r 90.5 0.83 1.8E-05 39.9 6.5 101 42-150 3-109 (305)
365 COG0673 MviM Predicted dehydro 90.5 3.3 7.2E-05 35.9 10.3 96 41-149 3-101 (342)
366 PF11968 DUF3321: Putative met 90.4 0.29 6.2E-06 41.0 3.3 79 42-140 53-139 (219)
367 PRK06249 2-dehydropantoate 2-r 90.4 1.2 2.6E-05 38.9 7.4 104 42-150 6-111 (313)
368 TIGR01425 SRP54_euk signal rec 90.4 2.7 5.9E-05 38.8 9.9 103 41-146 100-222 (429)
369 COG2961 ComJ Protein involved 90.3 3.2 6.9E-05 35.7 9.4 114 26-146 75-196 (279)
370 PRK10669 putative cation:proto 90.2 1.5 3.2E-05 41.6 8.3 66 50-121 423-491 (558)
371 COG0686 Ald Alanine dehydrogen 90.2 3 6.5E-05 37.2 9.5 103 39-151 166-272 (371)
372 PTZ00354 alcohol dehydrogenase 90.2 5.7 0.00012 33.8 11.4 99 37-145 137-240 (334)
373 PRK05786 fabG 3-ketoacyl-(acyl 90.1 6.7 0.00014 31.8 11.3 78 40-120 4-90 (238)
374 cd08255 2-desacetyl-2-hydroxye 90.1 6.9 0.00015 32.6 11.6 96 36-145 93-190 (277)
375 cd08276 MDR7 Medium chain dehy 90.1 5.8 0.00013 33.8 11.4 99 37-145 157-259 (336)
376 PRK14620 NAD(P)H-dependent gly 90.1 3.3 7E-05 36.2 9.9 100 44-150 3-111 (326)
377 PF01210 NAD_Gly3P_dh_N: NAD-d 90.1 6.7 0.00015 30.6 10.8 91 44-143 2-100 (157)
378 PF03141 Methyltransf_29: Puta 90.0 0.32 6.8E-06 45.5 3.5 99 37-147 362-469 (506)
379 PRK03659 glutathione-regulated 90.0 1.4 3.1E-05 42.2 8.2 87 50-143 406-496 (601)
380 PRK08945 putative oxoacyl-(acy 89.9 2.3 4.9E-05 35.1 8.4 79 39-119 10-100 (247)
381 TIGR03026 NDP-sugDHase nucleot 89.9 2.7 5.8E-05 38.2 9.5 95 51-151 7-125 (411)
382 COG0569 TrkA K+ transport syst 89.9 3.3 7.2E-05 34.6 9.4 97 44-147 3-103 (225)
383 PLN02586 probable cinnamyl alc 89.8 8 0.00017 34.2 12.3 95 39-145 182-278 (360)
384 KOG2078 tRNA modification enzy 89.8 0.26 5.5E-06 45.3 2.7 63 39-106 248-313 (495)
385 TIGR01007 eps_fam capsular exo 89.8 3.3 7.2E-05 33.5 9.2 43 40-82 16-61 (204)
386 PRK13771 putative alcohol dehy 89.6 6 0.00013 34.0 11.1 95 37-145 159-255 (334)
387 cd08286 FDH_like_ADH2 formalde 89.5 8.4 0.00018 33.4 12.1 99 38-144 164-265 (345)
388 KOG1331 Predicted methyltransf 89.5 0.36 7.8E-06 42.0 3.3 105 23-143 31-141 (293)
389 PRK08655 prephenate dehydrogen 89.4 2.8 6.1E-05 38.6 9.3 90 43-147 2-92 (437)
390 cd08244 MDR_enoyl_red Possible 89.4 10 0.00022 32.2 12.3 100 36-145 138-241 (324)
391 PRK00094 gpsA NAD(P)H-dependen 89.4 4.1 9E-05 35.2 10.0 100 43-150 3-110 (325)
392 PRK07502 cyclohexadienyl dehyd 89.3 2.2 4.8E-05 37.0 8.2 89 42-143 7-97 (307)
393 cd08232 idonate-5-DH L-idonate 89.2 4.7 0.0001 34.8 10.2 93 40-145 165-262 (339)
394 cd08236 sugar_DH NAD(P)-depend 89.2 7.9 0.00017 33.4 11.6 101 36-145 155-258 (343)
395 cd08297 CAD3 Cinnamyl alcohol 89.2 9.7 0.00021 32.8 12.2 99 37-144 162-264 (341)
396 PLN02353 probable UDP-glucose 89.2 1.6 3.4E-05 40.8 7.5 100 43-151 3-132 (473)
397 COG0270 Dcm Site-specific DNA 89.2 2.6 5.7E-05 37.2 8.6 96 42-148 4-118 (328)
398 cd00401 AdoHcyase S-adenosyl-L 89.1 6.1 0.00013 36.3 11.2 87 39-144 200-288 (413)
399 PRK07102 short chain dehydroge 89.1 2.5 5.3E-05 34.8 8.0 76 42-119 2-84 (243)
400 KOG0023 Alcohol dehydrogenase, 88.9 5 0.00011 35.8 9.9 97 39-145 180-279 (360)
401 PRK15057 UDP-glucose 6-dehydro 88.9 3.3 7.2E-05 37.6 9.2 94 51-151 7-122 (388)
402 PRK06949 short chain dehydroge 88.9 4.3 9.3E-05 33.5 9.3 79 40-120 8-95 (258)
403 cd08278 benzyl_alcohol_DH Benz 88.8 7.7 0.00017 34.2 11.5 102 37-146 183-286 (365)
404 KOG0022 Alcohol dehydrogenase, 88.8 5.5 0.00012 35.6 10.1 99 36-142 188-291 (375)
405 TIGR02012 tigrfam_recA protein 88.8 2.5 5.5E-05 37.5 8.2 116 32-148 43-191 (321)
406 PLN02545 3-hydroxybutyryl-CoA 88.7 0.91 2E-05 39.2 5.3 92 42-143 5-116 (295)
407 COG1565 Uncharacterized conser 88.6 1.6 3.5E-05 39.3 6.8 47 41-88 78-130 (370)
408 PRK08293 3-hydroxybutyryl-CoA 88.6 0.82 1.8E-05 39.4 4.9 97 42-148 4-121 (287)
409 PF00072 Response_reg: Respons 88.6 6.2 0.00014 27.7 8.9 75 70-145 1-78 (112)
410 TIGR01963 PHB_DH 3-hydroxybuty 88.5 2.8 6.1E-05 34.3 8.0 76 42-119 2-86 (255)
411 COG1004 Ugd Predicted UDP-gluc 88.3 4.3 9.4E-05 37.1 9.4 95 51-151 7-125 (414)
412 PLN02662 cinnamyl-alcohol dehy 88.3 3 6.6E-05 35.7 8.3 78 41-120 4-85 (322)
413 PRK03562 glutathione-regulated 88.2 2.3 5.1E-05 40.9 8.2 72 42-122 401-475 (621)
414 PRK08324 short chain dehydroge 88.1 8.1 0.00018 37.5 11.9 77 41-120 422-507 (681)
415 cd03115 SRP The signal recogni 88.1 9.3 0.0002 29.9 10.4 98 49-146 8-122 (173)
416 PRK00771 signal recognition pa 88.0 4.5 9.8E-05 37.4 9.6 104 40-146 94-215 (437)
417 TIGR00872 gnd_rel 6-phosphoglu 88.0 5.4 0.00012 34.6 9.7 88 44-143 3-90 (298)
418 PF10237 N6-adenineMlase: Prob 87.9 12 0.00027 29.8 11.0 111 24-145 7-123 (162)
419 PF11899 DUF3419: Protein of u 87.9 1.4 3E-05 40.0 6.1 73 74-149 256-337 (380)
420 TIGR00561 pntA NAD(P) transhyd 87.8 6.9 0.00015 37.0 10.8 125 39-175 162-312 (511)
421 PRK09260 3-hydroxybutyryl-CoA 87.8 1.6 3.4E-05 37.6 6.2 93 42-143 2-114 (288)
422 PRK11889 flhF flagellar biosyn 87.8 3.5 7.7E-05 38.0 8.6 104 40-145 240-359 (436)
423 PF10354 DUF2431: Domain of un 87.7 2.8 6E-05 33.5 7.1 105 49-154 4-135 (166)
424 TIGR02819 fdhA_non_GSH formald 87.7 14 0.0003 33.3 12.5 101 37-145 182-299 (393)
425 TIGR03029 EpsG chain length de 87.6 4.3 9.2E-05 34.5 8.7 40 40-79 101-144 (274)
426 cd05281 TDH Threonine dehydrog 87.6 17 0.00036 31.5 12.6 98 39-145 162-262 (341)
427 PRK07454 short chain dehydroge 87.6 6.1 0.00013 32.3 9.4 79 40-120 5-92 (241)
428 cd08266 Zn_ADH_like1 Alcohol d 87.5 13 0.00027 31.5 11.7 97 38-144 164-264 (342)
429 TIGR01915 npdG NADPH-dependent 87.5 10 0.00022 31.2 10.7 87 44-136 3-93 (219)
430 COG0287 TyrA Prephenate dehydr 87.4 2.3 5.1E-05 36.9 7.0 96 43-151 5-102 (279)
431 TIGR00745 apbA_panE 2-dehydrop 87.3 3.8 8.2E-05 34.8 8.2 91 54-150 5-98 (293)
432 PRK08213 gluconate 5-dehydroge 87.3 5.2 0.00011 33.1 8.9 79 40-120 11-98 (259)
433 PRK10083 putative oxidoreducta 87.2 16 0.00034 31.5 12.2 102 37-145 157-259 (339)
434 PRK09354 recA recombinase A; P 87.2 3.5 7.5E-05 37.1 8.1 116 32-148 48-196 (349)
435 cd08296 CAD_like Cinnamyl alco 87.1 13 0.00028 32.1 11.6 99 37-145 160-259 (333)
436 PRK07671 cystathionine beta-ly 87.1 10 0.00022 34.1 11.2 122 22-150 46-175 (377)
437 cd08290 ETR 2-enoyl thioester 87.0 8.3 0.00018 33.2 10.4 99 37-145 143-251 (341)
438 cd05213 NAD_bind_Glutamyl_tRNA 87.0 20 0.00044 31.3 13.0 98 39-150 176-276 (311)
439 cd08265 Zn_ADH3 Alcohol dehydr 86.9 11 0.00023 33.6 11.2 100 38-145 201-307 (384)
440 cd08241 QOR1 Quinone oxidoredu 86.8 14 0.00031 30.8 11.5 100 36-145 135-238 (323)
441 PRK07666 fabG 3-ketoacyl-(acyl 86.8 6.2 0.00013 32.2 9.0 78 40-119 6-92 (239)
442 cd08234 threonine_DH_like L-th 86.8 9 0.0002 32.8 10.4 98 36-145 155-257 (334)
443 PRK10754 quinone oxidoreductas 86.7 10 0.00022 32.5 10.7 98 38-145 138-239 (327)
444 PF03446 NAD_binding_2: NAD bi 86.6 5.2 0.00011 31.4 8.1 86 52-149 9-97 (163)
445 KOG4058 Uncharacterized conser 86.6 4.4 9.5E-05 32.4 7.4 105 34-145 66-172 (199)
446 PRK06130 3-hydroxybutyryl-CoA 86.6 9.3 0.0002 33.0 10.4 93 42-143 5-112 (311)
447 cd08289 MDR_yhfp_like Yhfp put 86.6 16 0.00036 31.0 11.9 94 41-145 147-243 (326)
448 cd05282 ETR_like 2-enoyl thioe 86.5 15 0.00031 31.2 11.5 97 38-144 136-236 (323)
449 PLN02989 cinnamyl-alcohol dehy 86.5 3.7 8.1E-05 35.4 7.9 79 40-120 4-86 (325)
450 cd08250 Mgc45594_like Mgc45594 86.4 13 0.00028 31.7 11.2 97 37-144 136-236 (329)
451 PLN02427 UDP-apiose/xylose syn 86.4 3.3 7.1E-05 36.9 7.6 79 39-119 12-94 (386)
452 PRK07680 late competence prote 86.3 7.3 0.00016 33.2 9.5 87 44-142 3-93 (273)
453 PLN02178 cinnamyl-alcohol dehy 86.3 14 0.0003 33.1 11.6 93 40-145 178-273 (375)
454 KOG2671 Putative RNA methylase 86.2 0.73 1.6E-05 41.4 3.2 92 23-119 191-292 (421)
455 cd05276 p53_inducible_oxidored 86.2 14 0.00031 30.7 11.2 98 37-144 136-237 (323)
456 PRK07109 short chain dehydroge 86.2 16 0.00035 32.0 11.8 79 40-120 7-94 (334)
457 cd08231 MDR_TM0436_like Hypoth 86.1 12 0.00027 32.6 11.0 98 40-145 177-280 (361)
458 cd01078 NAD_bind_H4MPT_DH NADP 86.0 16 0.00035 29.3 11.6 84 39-124 26-110 (194)
459 PRK12829 short chain dehydroge 86.0 9.7 0.00021 31.3 9.9 79 37-119 7-94 (264)
460 PRK15001 SAM-dependent 23S rib 86.0 9.3 0.0002 34.7 10.3 104 31-147 35-144 (378)
461 PRK07810 O-succinylhomoserine 85.8 15 0.00032 33.4 11.7 124 22-151 66-197 (403)
462 PF01053 Cys_Met_Meta_PP: Cys/ 85.8 9.2 0.0002 34.7 10.2 123 22-150 51-182 (386)
463 PRK15182 Vi polysaccharide bio 85.7 5.8 0.00013 36.5 9.0 103 40-151 5-125 (425)
464 PRK11199 tyrA bifunctional cho 85.6 3.1 6.7E-05 37.5 7.1 80 42-150 99-178 (374)
465 PRK06223 malate dehydrogenase; 85.6 21 0.00045 30.9 12.1 98 42-148 3-122 (307)
466 PTZ00142 6-phosphogluconate de 85.5 6.4 0.00014 36.8 9.3 123 51-176 8-138 (470)
467 COG1748 LYS9 Saccharopine dehy 85.5 6 0.00013 36.1 8.8 73 42-120 2-77 (389)
468 PLN02702 L-idonate 5-dehydroge 85.3 10 0.00022 33.3 10.2 100 38-145 179-285 (364)
469 PRK06035 3-hydroxyacyl-CoA deh 85.2 4 8.7E-05 35.1 7.4 95 42-147 4-121 (291)
470 PRK08306 dipicolinate synthase 85.1 10 0.00023 33.0 10.0 95 40-151 151-245 (296)
471 PRK15181 Vi polysaccharide bio 85.1 2.9 6.3E-05 36.8 6.6 79 40-120 14-99 (348)
472 PLN02256 arogenate dehydrogena 85.0 12 0.00026 32.8 10.3 97 32-143 27-124 (304)
473 cd08260 Zn_ADH6 Alcohol dehydr 84.9 17 0.00037 31.4 11.3 99 37-144 162-263 (345)
474 cd02037 MRP-like MRP (Multiple 84.9 2.4 5.2E-05 33.3 5.4 67 51-123 10-79 (169)
475 PHA02518 ParA-like protein; Pr 84.8 3.9 8.5E-05 32.8 6.8 72 50-122 10-87 (211)
476 PRK08229 2-dehydropantoate 2-r 84.8 4.7 0.0001 35.3 7.8 97 43-148 4-110 (341)
477 cd08245 CAD Cinnamyl alcohol d 84.8 24 0.00052 30.1 13.1 96 37-145 159-256 (330)
478 PRK12491 pyrroline-5-carboxyla 84.8 6.8 0.00015 33.7 8.5 144 43-203 4-164 (272)
479 PRK12439 NAD(P)H-dependent gly 84.7 16 0.00035 32.3 11.2 104 38-150 4-116 (341)
480 smart00829 PKS_ER Enoylreducta 84.7 20 0.00044 29.2 11.5 100 36-145 100-205 (288)
481 PRK12826 3-ketoacyl-(acyl-carr 84.7 6.1 0.00013 32.2 8.0 78 40-119 5-91 (251)
482 PRK12429 3-hydroxybutyrate deh 84.7 8.3 0.00018 31.6 8.9 78 40-119 3-89 (258)
483 PTZ00357 methyltransferase; Pr 84.7 3.6 7.9E-05 40.4 7.2 94 43-137 703-823 (1072)
484 cd08279 Zn_ADH_class_III Class 84.6 14 0.0003 32.5 10.7 101 36-145 178-282 (363)
485 TIGR01324 cysta_beta_ly_B cyst 84.5 30 0.00066 31.1 13.5 126 24-151 48-177 (377)
486 PRK07326 short chain dehydroge 84.5 8 0.00017 31.3 8.6 76 41-119 6-90 (237)
487 cd08246 crotonyl_coA_red croto 84.5 18 0.00038 32.2 11.4 100 37-146 190-316 (393)
488 KOG2352 Predicted spermine/spe 84.5 6.4 0.00014 36.8 8.6 99 43-146 51-162 (482)
489 PRK05225 ketol-acid reductoiso 84.3 1.6 3.5E-05 40.6 4.7 94 37-145 32-131 (487)
490 PF00448 SRP54: SRP54-type pro 84.3 9.1 0.0002 31.3 8.7 103 41-145 1-122 (196)
491 cd08253 zeta_crystallin Zeta-c 84.2 23 0.0005 29.5 11.9 99 36-144 140-242 (325)
492 PLN02650 dihydroflavonol-4-red 84.2 5.2 0.00011 35.0 7.8 78 40-119 4-85 (351)
493 PRK07819 3-hydroxybutyryl-CoA 84.2 4.8 0.0001 34.8 7.4 97 42-149 6-123 (286)
494 PRK07806 short chain dehydroge 84.1 21 0.00046 29.1 12.0 103 40-144 5-133 (248)
495 PRK14106 murD UDP-N-acetylmura 84.0 8.3 0.00018 35.1 9.3 75 40-122 4-79 (450)
496 PRK08064 cystathionine beta-ly 84.0 17 0.00037 32.7 11.2 121 22-150 50-179 (390)
497 COG2130 Putative NADP-dependen 83.9 17 0.00037 32.3 10.5 103 34-145 144-249 (340)
498 PRK07774 short chain dehydroge 83.9 8.2 0.00018 31.6 8.5 79 40-120 5-92 (250)
499 COG0541 Ffh Signal recognition 83.9 14 0.00031 34.2 10.4 121 39-164 98-247 (451)
500 PRK08507 prephenate dehydrogen 83.9 4.8 0.0001 34.4 7.2 85 44-145 3-89 (275)
No 1
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=100.00 E-value=3.2e-40 Score=270.84 Aligned_cols=196 Identities=56% Similarity=0.820 Sum_probs=172.4
Q ss_pred CcCChhHHHHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEcccc--HHHHHHHHHHHccCCCcEEEEEeCChhH
Q 041509 2 ACWSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANV--ANATTLALAAAAHQTGGRVVCILRRVEE 79 (211)
Q Consensus 2 ~~~~~~~~~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg--~G~stl~la~a~~~~~g~v~tiE~~~~~ 79 (211)
.+||||++++|||+++++++...+|..+|||++|+++++++.|+|+ .+. ...+|+.||.|+++++|+++||..+++.
T Consensus 3 l~WSpe~AtkAYl~Tvk~c~~~~ep~~aEfISAlAAG~nAkliVe~-~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~ 81 (218)
T PF07279_consen 3 LVWSPENATKAYLDTVKMCKKFKEPGVAEFISALAAGWNAKLIVEA-WSSGGAISTTIALAAAARQTGGRHVCIVPDEQS 81 (218)
T ss_pred ceeChhHHHHHHHHHHHHhhhcCCCCHHHHHHHHhccccceEEEEE-ecCCCchHhHHHHHHHHHhcCCeEEEEcCChhh
Confidence 4799999999999999999999999999999999999999999999 343 3357999999999999999999999999
Q ss_pred HHHHHHHhc--CCCCcEEEEEcch-HHHhhhccCCccEEEEcCCcCcHH-HHHHHHHhcCCCCcEEEEEecCCCCC----
Q 041509 80 YKLSKKILG--LDASHVEFVIGDA-QSLLLSHFREADFVLIDCNLENHE-GVLRAVQAGNKPNGAVVVGYNAFRKG---- 151 (211)
Q Consensus 80 ~~~Ar~~~~--~~~~~V~~~~gda-~e~l~~l~~~fD~VfiD~~~~~y~-~~l~~~~~~L~pgG~viv~dn~~~~~---- 151 (211)
....++.+. +..+.++|+.|++ .++++. ...+||+++|+..++|. ++|+.+. +.|.|.|+|++|++.++
T Consensus 82 ~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~-~~~iDF~vVDc~~~d~~~~vl~~~~--~~~~GaVVV~~Na~~r~~~~~ 158 (218)
T PF07279_consen 82 LSEYKKALGEAGLSDVVEFVVGEAPEEVMPG-LKGIDFVVVDCKREDFAARVLRAAK--LSPRGAVVVCYNAFSRSTNGF 158 (218)
T ss_pred HHHHHHHHhhccccccceEEecCCHHHHHhh-ccCCCEEEEeCCchhHHHHHHHHhc--cCCCceEEEEeccccCCcCCc
Confidence 888888887 6677899999995 557765 57899999999999998 8888765 56789999999999854
Q ss_pred cee-----cCCCcEEEeecCCcEEEEEEeccC-----CCCccceEEeccccCCceeeEEe
Q 041509 152 SWR-----SSGSKSQLLPIGEGLLVTRIAAAS-----ANKKSHWIVKVDKCTGEEHVFRV 201 (211)
Q Consensus 152 ~~~-----~~~~~~v~lpig~Gl~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 201 (211)
.|. .+.+++++||||.||+|++....+ ++.++|||+|+|++||||||||.
T Consensus 159 ~w~~~~~~~r~Vrsv~LPIG~GleVt~ig~~~~~~~~~~~~srWi~~vD~~sGEeHv~R~ 218 (218)
T PF07279_consen 159 SWRSVLRGRRVVRSVFLPIGKGLEVTRIGASGGSNSSRRKKSRWIKHVDQCSGEEHVFRR 218 (218)
T ss_pred cHHHhcCCCCceeEEEeccCCCeEEEEEeecCCCCCCCCCCccceEeeccCCCceeeecC
Confidence 454 366899999999999999999864 44789999999999999999994
No 2
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=6.8e-37 Score=253.34 Aligned_cols=152 Identities=23% Similarity=0.327 Sum_probs=135.9
Q ss_pred CcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEE
Q 041509 21 QKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVI 98 (211)
Q Consensus 21 ~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~ 98 (211)
...++|.+|+||..+++..+|++|||| ||++||||+|||+++++ +|+|+|||.+|+.++.|+++++ ++.++|+++.
T Consensus 26 ~~~i~~~~g~lL~~l~~~~~~k~vLEI-Gt~~GySal~la~~l~~-~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~ 103 (205)
T PF01596_consen 26 QMSISPETGQLLQMLVRLTRPKRVLEI-GTFTGYSALWLAEALPE-DGKITTIEIDPERAEIARENFRKAGLDDRIEVIE 103 (205)
T ss_dssp GGSHHHHHHHHHHHHHHHHT-SEEEEE-STTTSHHHHHHHHTSTT-TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred CCccCHHHHHHHHHHHHhcCCceEEEe-ccccccHHHHHHHhhcc-cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 357889999999999999999999999 99999999999999975 8999999999999999999998 7788999999
Q ss_pred cchHHHhhhc-----cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCce--------------------
Q 041509 99 GDAQSLLLSH-----FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGSW-------------------- 153 (211)
Q Consensus 99 gda~e~l~~l-----~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~~-------------------- 153 (211)
|||.++++.+ .++|||||+|++|++|.+|++.+.++|+| |+++++||++++|..
T Consensus 104 gda~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~-ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i 182 (205)
T PF01596_consen 104 GDALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRP-GGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYI 182 (205)
T ss_dssp S-HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEE-EEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHH
T ss_pred eccHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccC-CeEEEEccccccceecCccchhhhHHHHHHHHHHH
Confidence 9999999876 24799999999999999999999999998 557778999998721
Q ss_pred -ecCCCcEEEeecCCcEEEEEEe
Q 041509 154 -RSSGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 154 -~~~~~~~v~lpig~Gl~v~~~~ 175 (211)
.+|+|++++||+|||++|++|+
T Consensus 183 ~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 183 ANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp HH-TTEEEEEECSTTEEEEEEE-
T ss_pred HhCCCeeEEEEEeCCeeEEEEEC
Confidence 2799999999999999999985
No 3
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=4.2e-35 Score=243.71 Aligned_cols=150 Identities=23% Similarity=0.357 Sum_probs=138.0
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEE-c
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVI-G 99 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~-g 99 (211)
++.|++|+||..+++..++++|||| ||++||||+|||.+++. +|++||||+||++++.|++|++ +..++|+++. |
T Consensus 42 i~~~e~g~~L~~L~~~~~~k~iLEi-GT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g 119 (219)
T COG4122 42 IIDPETGALLRLLARLSGPKRILEI-GTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG 119 (219)
T ss_pred CCChhHHHHHHHHHHhcCCceEEEe-ecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecC
Confidence 5669999999999999999999999 99999999999999986 7899999999999999999998 7888899999 6
Q ss_pred chHHHhhh-ccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc------------------e-----ec
Q 041509 100 DAQSLLLS-HFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS------------------W-----RS 155 (211)
Q Consensus 100 da~e~l~~-l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~------------------~-----~~ 155 (211)
|+.+.+.. +.++||+||+|++|.+|+++++.+.++|+||| ++++||++++|. + .+
T Consensus 120 dal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GG-liv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (219)
T COG4122 120 DALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGG-LIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLED 198 (219)
T ss_pred cHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCc-EEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhC
Confidence 99999986 47899999999999999999999999999955 677799999871 0 17
Q ss_pred CCCcEEEeecCCcEEEEEEe
Q 041509 156 SGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 156 ~~~~~v~lpig~Gl~v~~~~ 175 (211)
++++++++|+|||+.+++|.
T Consensus 199 ~~~~t~~lP~gDGl~v~~k~ 218 (219)
T COG4122 199 PRYDTVLLPLGDGLLLSRKR 218 (219)
T ss_pred cCceeEEEecCCceEEEeec
Confidence 99999999999999999985
No 4
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=3.4e-34 Score=243.14 Aligned_cols=151 Identities=22% Similarity=0.284 Sum_probs=137.6
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.++|.+|+||..+++..+|++|||| ||++||||+|+|.++++ +|+|+|||.+++.++.|+++++ ++.++|+++.||
T Consensus 62 ~~~~~~g~lL~~l~~~~~ak~iLEi-GT~~GySal~la~al~~-~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~ 139 (247)
T PLN02589 62 TTSADEGQFLNMLLKLINAKNTMEI-GVYTGYSLLATALALPE-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGP 139 (247)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEE-eChhhHHHHHHHhhCCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEecc
Confidence 4679999999999999999999999 99999999999999975 8999999999999999999998 778999999999
Q ss_pred hHHHhhhc------cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCce---------------------
Q 041509 101 AQSLLLSH------FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGSW--------------------- 153 (211)
Q Consensus 101 a~e~l~~l------~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~~--------------------- 153 (211)
+.+.|+++ .++|||||+|++|.+|.+|++.+.++|+||| ++++||++++|..
T Consensus 140 a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GG-viv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~ 218 (247)
T PLN02589 140 ALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGG-VIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLE 218 (247)
T ss_pred HHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCe-EEEEcCCCCCCcccCccccchhhhHHHHHHHHHH
Confidence 99999876 2699999999999999999999999999955 6777999987620
Q ss_pred ------ecCCCcEEEeecCCcEEEEEEec
Q 041509 154 ------RSSGSKSQLLPIGEGLLVTRIAA 176 (211)
Q Consensus 154 ------~~~~~~~v~lpig~Gl~v~~~~~ 176 (211)
.+++|+++++|+|||+++++|..
T Consensus 219 fn~~v~~d~~~~~~llPigDGl~l~~k~~ 247 (247)
T PLN02589 219 LNKALAADPRIEICMLPVGDGITLCRRIS 247 (247)
T ss_pred HHHHHHhCCCEEEEEEEeCCccEEEEEeC
Confidence 16889999999999999999863
No 5
>PLN02476 O-methyltransferase
Probab=100.00 E-value=8.2e-34 Score=243.98 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=138.2
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..++|++++||..+++..++++|||| ||++||||+|+|.++++ +|+|+|+|.++++++.|++|++ |+.++|+++.|
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEI-GT~tGySal~lA~al~~-~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~G 177 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEV-GVYTGYSSLAVALVLPE-SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHG 177 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEe-cCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 46899999999999999999999999 99999999999999975 7899999999999999999998 77889999999
Q ss_pred chHHHhhhc-----cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCce---------------------
Q 041509 100 DAQSLLLSH-----FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGSW--------------------- 153 (211)
Q Consensus 100 da~e~l~~l-----~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~~--------------------- 153 (211)
|+.+.|+++ .++|||||+|+++++|.+|++.+.++|+||| ++++||++++|..
T Consensus 178 dA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GG-vIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~ 256 (278)
T PLN02476 178 LAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGG-VIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLM 256 (278)
T ss_pred CHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCc-EEEEecCccCCcccCcccCCHHHHHHHHHHHHHh
Confidence 999999875 3589999999999999999999999999965 5667999998831
Q ss_pred ecCCCcEEEeecCCcEEEEEEe
Q 041509 154 RSSGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 154 ~~~~~~~v~lpig~Gl~v~~~~ 175 (211)
.|++++++++|+|||+++++|+
T Consensus 257 ~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 257 DDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred hCCCEEEEEEEeCCeeEEEEEC
Confidence 1799999999999999999974
No 6
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.98 E-value=2.9e-31 Score=223.85 Aligned_cols=150 Identities=21% Similarity=0.208 Sum_probs=136.0
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.++|.+|+||..+++..++++|||+ |||+|||++|++.+++. +|+|+++|.++++++.|++|++ ++.++|+++.||
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEi-Gt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gd 128 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEI-GVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSD 128 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEe-cCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcc
Confidence 5789999999999999999999999 99999999999999864 7899999999999999999998 777899999999
Q ss_pred hHHHhhhc-----cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCce----------------------
Q 041509 101 AQSLLLSH-----FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGSW---------------------- 153 (211)
Q Consensus 101 a~e~l~~l-----~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~~---------------------- 153 (211)
+.+.++.+ .++||+||+|++++.|.++++.+.++|+||| ++++||++++|..
T Consensus 129 a~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG-~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~ 207 (234)
T PLN02781 129 ALSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGG-IIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFN 207 (234)
T ss_pred HHHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCe-EEEEEcCCcCCeecCcccccchhhhHHHHHHHHHH
Confidence 99998765 3689999999999999999999999999966 5677999986610
Q ss_pred ----ecCCCcEEEeecCCcEEEEEEe
Q 041509 154 ----RSSGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 154 ----~~~~~~~v~lpig~Gl~v~~~~ 175 (211)
.+++++++++|+|||+++++|.
T Consensus 208 ~~i~~~~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 208 KLLASDPRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred HHHhhCCCeEEEEEEeCCccEEEEEe
Confidence 1689999999999999999975
No 7
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.2e-29 Score=210.05 Aligned_cols=152 Identities=24% Similarity=0.313 Sum_probs=138.7
Q ss_pred CcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEE
Q 041509 21 QKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVI 98 (211)
Q Consensus 21 ~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~ 98 (211)
+..+.|+.+.|+.++++..+|+++||| |++||||++..|.++++ +|+|+|+|+|++.++.+.+..+ +..++|++++
T Consensus 54 ~m~v~~d~g~fl~~li~~~~ak~~lel-GvfTGySaL~~Alalp~-dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~ 131 (237)
T KOG1663|consen 54 EMLVGPDKGQFLQMLIRLLNAKRTLEL-GVFTGYSALAVALALPE-DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIE 131 (237)
T ss_pred ceecChHHHHHHHHHHHHhCCceEEEE-ecccCHHHHHHHHhcCC-CceEEEEecChHHHHHhHHHHHhccccceeeeee
Confidence 357999999999999999999999999 99999999999999987 9999999999999999999888 7789999999
Q ss_pred cchHHHhhhc-----cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCCc----------e----------
Q 041509 99 GDAQSLLLSH-----FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKGS----------W---------- 153 (211)
Q Consensus 99 gda~e~l~~l-----~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~~----------~---------- 153 (211)
|++.+.|+++ .++|||+|+|++|.+|.++++.+.+++|+|| |+++||++++|. +
T Consensus 132 g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GG-vi~~DNvl~~G~v~~p~~~~~~~~~~~r~~~~~ 210 (237)
T KOG1663|consen 132 GPALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGG-VIVVDNVLWPGVVADPDVNTPVRGRSIREALNL 210 (237)
T ss_pred cchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhccccc-EEEEeccccCCcccCcccCCCcchhhhhhhhhh
Confidence 9999999876 4689999999999999999999999999955 667799999871 0
Q ss_pred -----ecCCCcEEEeecCCcEEEEEEe
Q 041509 154 -----RSSGSKSQLLPIGEGLLVTRIA 175 (211)
Q Consensus 154 -----~~~~~~~v~lpig~Gl~v~~~~ 175 (211)
+|+++....+|+|||+.+.++.
T Consensus 211 n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 211 NKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred hhHhccCcceeeEeeeccCceeeeccC
Confidence 2788999999999999998863
No 8
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.3e-17 Score=135.14 Aligned_cols=130 Identities=20% Similarity=0.161 Sum_probs=103.2
Q ss_pred hHHHHHHHHH-hh--cCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHH
Q 041509 7 ENATKAYLKT-LK--MGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLS 83 (211)
Q Consensus 7 ~~~~~ay~~~-~~--~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~A 83 (211)
.....||.|+ +. .++.+..|.....+..++...++++|||| |||+||.|..||+-. ++|++||++++.++.|
T Consensus 36 ~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~~~~g~~VLEI-GtGsGY~aAvla~l~----~~V~siEr~~~L~~~A 110 (209)
T COG2518 36 AYKHLAYEDRALPIGCGQTISAPHMVARMLQLLELKPGDRVLEI-GTGSGYQAAVLARLV----GRVVSIERIEELAEQA 110 (209)
T ss_pred hhhcccccCCcccCCCCceecCcHHHHHHHHHhCCCCCCeEEEE-CCCchHHHHHHHHHh----CeEEEEEEcHHHHHHH
Confidence 3446678775 33 35567788766666666788899999999 999999999999864 6999999999999999
Q ss_pred HHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 84 KKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 84 r~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++|++ ++ .+|.+++||.....+. ..+||.|++.+.....++ .+.+.|+|||.+++--.
T Consensus 111 ~~~L~~lg~-~nV~v~~gDG~~G~~~-~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 111 RRNLETLGY-ENVTVRHGDGSKGWPE-EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred HHHHHHcCC-CceEEEECCcccCCCC-CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEEEc
Confidence 99999 54 4599999999988774 689999999998775433 23445667999887554
No 9
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.71 E-value=6.7e-17 Score=134.38 Aligned_cols=130 Identities=20% Similarity=0.203 Sum_probs=102.2
Q ss_pred HHHHHHH-hh--cCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH
Q 041509 10 TKAYLKT-LK--MGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI 86 (211)
Q Consensus 10 ~~ay~~~-~~--~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~ 86 (211)
..||.|. +. .++.+..|.....+...+...++.+|||| |||+||.|..+++.+.. +++|+++|+++++++.|+++
T Consensus 43 ~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~~~~g~~VLdI-G~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~ 120 (212)
T PRK13942 43 EYAYVDTPLEIGYGQTISAIHMVAIMCELLDLKEGMKVLEI-GTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKT 120 (212)
T ss_pred hcCcCCCCccCCCCCEeCcHHHHHHHHHHcCCCCcCEEEEE-CCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHH
Confidence 3466664 22 23456778877777777777888999999 99999999999988753 68999999999999999999
Q ss_pred hc-CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 87 LG-LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 87 ~~-~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++ ...++|++++||+.+..+. .++||.|++++...++. +.+.+.|+|||.+++..
T Consensus 121 l~~~g~~~v~~~~gd~~~~~~~-~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 121 LKKLGYDNVEVIVGDGTLGYEE-NAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred HHHcCCCCeEEEECCcccCCCc-CCCcCEEEECCCcccch---HHHHHhhCCCcEEEEEE
Confidence 98 2246899999999876543 57999999998766543 45666789999887754
No 10
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.7e-16 Score=133.76 Aligned_cols=133 Identities=26% Similarity=0.269 Sum_probs=114.6
Q ss_pred HHHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc
Q 041509 9 ATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 9 ~~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
....|+..++...+++.|+-+.++.+.+...++.+|+|. |||+|..|.+||.++.+ .|+|+++|+.+++++.|++|++
T Consensus 63 ~~~d~~~~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEA-GtGSG~lt~~La~~vg~-~G~v~tyE~r~d~~k~A~~Nl~ 140 (256)
T COG2519 63 TPEDYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEA-GTGSGALTAYLARAVGP-EGHVTTYEIREDFAKTARENLS 140 (256)
T ss_pred CHHHHHHhCcCCCceecCCCHHHHHHHcCCCCCCEEEEc-ccCchHHHHHHHHhhCC-CceEEEEEecHHHHHHHHHHHH
Confidence 345677777767788999999999999999999999999 99999999999999865 7999999999999999999998
Q ss_pred --CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 89 --LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 89 --~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
++.++|++..||..+... .+.||.||+|-. +-.++++.+.+.|+|||.+++ .+..
T Consensus 141 ~~~l~d~v~~~~~Dv~~~~~--~~~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~-y~P~ 197 (256)
T COG2519 141 EFGLGDRVTLKLGDVREGID--EEDVDAVFLDLP--DPWNVLEHVSDALKPGGVVVV-YSPT 197 (256)
T ss_pred HhccccceEEEecccccccc--ccccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEE-EcCC
Confidence 777889999999998865 359999999976 356889999999999776554 5443
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.70 E-value=9.6e-17 Score=118.92 Aligned_cols=102 Identities=22% Similarity=0.253 Sum_probs=85.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
|..+|||+ |||+|..++++++.. ++.+|++||.+|++++.|++++. +..++|+++++|+ .......++||+|++
T Consensus 1 p~~~vLDl-GcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDL-GCGTGRLSIALARLF--PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEE-TTTTSHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEE
T ss_pred CCCEEEEE-cCcCCHHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEE
Confidence 46789999 999999999999854 37899999999999999999994 6679999999999 444444678999999
Q ss_pred cC-CcC------cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DC-NLE------NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~-~~~------~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+. ... +..++++.+.+.|+|||.+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 98 322 23567999999999988887743
No 12
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.70 E-value=1.7e-16 Score=131.15 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=93.1
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
....|.....+..++...+..+|||+ |||+||.+..+++.++. +++|+++|.++++++.|++|++ +..++++++++
T Consensus 54 ~~~~p~~~~~~~~~l~~~~~~~VLDi-G~GsG~~~~~la~~~~~-~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~ 131 (205)
T PRK13944 54 TISAPHMVAMMCELIEPRPGMKILEV-GTGSGYQAAVCAEAIER-RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG 131 (205)
T ss_pred EechHHHHHHHHHhcCCCCCCEEEEE-CcCccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 34455554545455556677899999 99999999999988753 6899999999999999999997 55567999999
Q ss_pred chHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 100 DAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+.+.++. .++||.|++++....+ .+.+.+.|+|||.+++.
T Consensus 132 d~~~~~~~-~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 132 DGKRGLEK-HAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIP 172 (205)
T ss_pred CcccCCcc-CCCccEEEEccCcchh---hHHHHHhcCcCcEEEEE
Confidence 99876653 5799999999876544 35677889999988764
No 13
>PLN03075 nicotianamine synthase; Provisional
Probab=99.69 E-value=3.5e-16 Score=135.78 Aligned_cols=117 Identities=13% Similarity=0.135 Sum_probs=99.1
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---CCCCcEEEEEc
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---LDASHVEFVIG 99 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~~~~~V~~~~g 99 (211)
+.+..+++|..+... +|++|+|| ||| .|+++++++.+..+ +++++++|.|+++.+.||++++ ++.++|+|+.+
T Consensus 108 L~~lE~~~L~~~~~~-~p~~VldI-GcGpgpltaiilaa~~~p-~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~ 184 (296)
T PLN03075 108 LSKLEFDLLSQHVNG-VPTKVAFV-GSGPLPLTSIVLAKHHLP-TTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTA 184 (296)
T ss_pred HHHHHHHHHHHhhcC-CCCEEEEE-CCCCcHHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEEC
Confidence 456667788777766 88999999 999 77888888876643 8999999999999999999994 66789999999
Q ss_pred chHHHhhhccCCccEEEEcC----CcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 100 DAQSLLLSHFREADFVLIDC----NLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~----~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+.+..+. .++||+||+++ +++++.++++.+.+.|+|||.+++-
T Consensus 185 Da~~~~~~-l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 185 DVMDVTES-LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred chhhcccc-cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 99986432 57899999996 4678999999999999998877663
No 14
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.66 E-value=2.5e-15 Score=121.75 Aligned_cols=134 Identities=23% Similarity=0.240 Sum_probs=107.7
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCc
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREA 112 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~f 112 (211)
.-.+..+.++++|| |||||..|+.+|... +.++|++||.++++++..++|.+ ...++++++.|+|.+.|+.+. +|
T Consensus 28 s~L~~~~g~~l~DI-GaGtGsi~iE~a~~~--p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~ 103 (187)
T COG2242 28 SKLRPRPGDRLWDI-GAGTGSITIEWALAG--PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SP 103 (187)
T ss_pred HhhCCCCCCEEEEe-CCCccHHHHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CC
Confidence 33467788999999 999999999999543 37999999999999999999998 337899999999999998644 89
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCC------c-eecCCC-cEEEeecCCcEEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKG------S-WRSSGS-KSQLLPIGEGLLVTRI 174 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~------~-~~~~~~-~~v~lpig~Gl~v~~~ 174 (211)
|.||+.+. ..+.+.++.+...|+|||.+++ |+..-. . +.+-++ +.+.+-+.+|..+...
T Consensus 104 daiFIGGg-~~i~~ile~~~~~l~~ggrlV~--naitlE~~~~a~~~~~~~g~~ei~~v~is~~~~lg~~ 170 (187)
T COG2242 104 DAIFIGGG-GNIEEILEAAWERLKPGGRLVA--NAITLETLAKALEALEQLGGREIVQVQISRGKPLGGG 170 (187)
T ss_pred CEEEECCC-CCHHHHHHHHHHHcCcCCeEEE--EeecHHHHHHHHHHHHHcCCceEEEEEeecceeccCe
Confidence 99999999 7899999999999999998887 655432 1 224445 5666666666554433
No 15
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=2e-15 Score=127.53 Aligned_cols=117 Identities=21% Similarity=0.166 Sum_probs=98.0
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda 101 (211)
....+-+.+..+....++.+|||+ |||||-.|+.+++..+ .|+|+++|+++.|++.|++.+. +... |+|++|||
T Consensus 35 ~~~~Wr~~~i~~~~~~~g~~vLDv-a~GTGd~a~~~~k~~g--~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dA 110 (238)
T COG2226 35 LHRLWRRALISLLGIKPGDKVLDV-ACGTGDMALLLAKSVG--TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDA 110 (238)
T ss_pred chHHHHHHHHHhhCCCCCCEEEEe-cCCccHHHHHHHHhcC--CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEech
Confidence 334455555555555588999999 6999999999999986 7999999999999999999998 4344 99999999
Q ss_pred HHHhhhccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 102 QSLLLSHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.++ |..+++||+|.+... ..++...++++.|.|+|||.++|.+
T Consensus 111 e~L-Pf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 111 ENL-PFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hhC-CCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 987 444889999999874 4478999999999999999888765
No 16
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.65 E-value=1.4e-15 Score=126.33 Aligned_cols=117 Identities=17% Similarity=0.155 Sum_probs=93.8
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGD 100 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gd 100 (211)
....|.....+..++...++.+|||+ |||+|+.|..|+...++ .++|+++|.++++++.|+++++ ...++++++++|
T Consensus 59 ~~~~p~~~~~~~~~l~~~~~~~VLDi-G~GsG~~a~~la~~~~~-~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d 136 (215)
T TIGR00080 59 TISAPHMVAMMTELLELKPGMKVLEI-GTGSGYQAAVLAEIVGR-DGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD 136 (215)
T ss_pred EechHHHHHHHHHHhCCCCcCEEEEE-CCCccHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC
Confidence 34556665555566677788999999 99999999999988653 6899999999999999999998 223689999999
Q ss_pred hHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 101 AQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+.+.++. .++||+|++++....+ .+.+.+.|+|||.+++.
T Consensus 137 ~~~~~~~-~~~fD~Ii~~~~~~~~---~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 137 GTQGWEP-LAPYDRIYVTAAGPKI---PEALIDQLKEGGILVMP 176 (215)
T ss_pred cccCCcc-cCCCCEEEEcCCcccc---cHHHHHhcCcCcEEEEE
Confidence 9876543 4689999999876644 34567778999988774
No 17
>PRK04457 spermidine synthase; Provisional
Probab=99.65 E-value=3.6e-15 Score=127.87 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=93.4
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l 108 (211)
++..+....++++|||| |||+|+++.+++...+ +.+|++||+||++++.|++++. +..++++++++|+.+.+...
T Consensus 57 m~~~l~~~~~~~~vL~I-G~G~G~l~~~l~~~~p--~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~ 133 (262)
T PRK04457 57 MMGFLLFNPRPQHILQI-GLGGGSLAKFIYTYLP--DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH 133 (262)
T ss_pred HHHHHhcCCCCCEEEEE-CCCHhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC
Confidence 33444444578999999 9999999999998764 6899999999999999999998 33578999999999998766
Q ss_pred cCCccEEEEcCCcCc-------HHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 109 FREADFVLIDCNLEN-------HEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 109 ~~~fD~VfiD~~~~~-------y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.++||+||+|+.... ..++++.+.+.|+|||.+++ |..
T Consensus 134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi--n~~ 178 (262)
T PRK04457 134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV--NLW 178 (262)
T ss_pred CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE--EcC
Confidence 678999999974332 37899999999999888776 544
No 18
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.65 E-value=3.3e-15 Score=122.18 Aligned_cols=132 Identities=15% Similarity=0.069 Sum_probs=100.1
Q ss_pred HHHHHHHHhhcCC--------cCCChhHHHHH-HHH---HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCC
Q 041509 9 ATKAYLKTLKMGQ--------KAKEPNEAEFI-SAL---AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRR 76 (211)
Q Consensus 9 ~~~ay~~~~~~~~--------~~~~~~~~~lL-~~l---~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~ 76 (211)
..++|+..++..- +..++.+-+.+ ..+ ....++.+|||+ |||+|+.++.++...+ +++|++||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDi-GcGtG~~al~la~~~~--~~~V~giD~s 78 (187)
T PRK00107 2 QLEAYVELLVKWNKKYNLTAIRDPEELWERHILDSLAIAPYLPGGERVLDV-GSGAGFPGIPLAIARP--ELKVTLVDSL 78 (187)
T ss_pred hHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHhhcCCCCeEEEE-cCCCCHHHHHHHHHCC--CCeEEEEeCc
Confidence 3567888777532 22333333222 222 222347899999 9999999999998653 6899999999
Q ss_pred hhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 77 VEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 77 ~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
+++++.|+++.+ +. ++++++++|+.+... .++||+|++++. .++.++++.+.+.|+|||.+++.+..
T Consensus 79 ~~~l~~A~~~~~~~~l-~~i~~~~~d~~~~~~--~~~fDlV~~~~~-~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 79 GKKIAFLREVAAELGL-KNVTVVHGRAEEFGQ--EEKFDVVTSRAV-ASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred HHHHHHHHHHHHHcCC-CCEEEEeccHhhCCC--CCCccEEEEccc-cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 999999999998 44 459999999988533 679999999863 56889999999999999999887644
No 19
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.65 E-value=4e-15 Score=122.17 Aligned_cols=106 Identities=13% Similarity=0.181 Sum_probs=92.0
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCcc
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD 113 (211)
....+..+|||+ |||+|+.++.++..+++ +++|+++|.++++++.|++|++ ++.++++++.+|+.+.++.+.+.||
T Consensus 36 l~~~~~~~vlDl-G~GtG~~s~~~a~~~~~-~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 36 LRLRKGDMILDI-GCGTGSVTVEASLLVGE-TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred cCCCCcCEEEEe-CCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 345577899999 99999999999887643 6899999999999999999998 4467899999999988776567899
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.||+++....+.++++.+.+.|+|||.+++
T Consensus 114 ~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 114 RIFIGGGSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred EEEECCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 999988777889999999999999887765
No 20
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.65 E-value=2.1e-16 Score=131.33 Aligned_cols=131 Identities=21% Similarity=0.217 Sum_probs=94.4
Q ss_pred HHHHHHH-hhc--CCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH
Q 041509 10 TKAYLKT-LKM--GQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI 86 (211)
Q Consensus 10 ~~ay~~~-~~~--~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~ 86 (211)
..||.|. +.. ++.+..|..-..+..++...+..+|||| |||+||.|..||..+.+ .|+|++||.+++.++.|+++
T Consensus 39 ~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l~pg~~VLeI-GtGsGY~aAlla~lvg~-~g~Vv~vE~~~~l~~~A~~~ 116 (209)
T PF01135_consen 39 DLAYEDRPLPIGCGQTISAPSMVARMLEALDLKPGDRVLEI-GTGSGYQAALLAHLVGP-VGRVVSVERDPELAERARRN 116 (209)
T ss_dssp GGTTSSS-EEEETTEEE--HHHHHHHHHHTTC-TT-EEEEE-S-TTSHHHHHHHHHHST-TEEEEEEESBHHHHHHHHHH
T ss_pred cCCCCCCCeeecceeechHHHHHHHHHHHHhcCCCCEEEEe-cCCCcHHHHHHHHhcCc-cceEEEECccHHHHHHHHHH
Confidence 4566664 222 3456667665545555568889999999 99999999999998864 78999999999999999999
Q ss_pred hc-CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 87 LG-LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 87 ~~-~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++ ....+|++++||+...++. ..+||.|++.+..+... ..+.+.|++||.+++.-.
T Consensus 117 l~~~~~~nv~~~~gdg~~g~~~-~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 117 LARLGIDNVEVVVGDGSEGWPE-EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp HHHHTTHSEEEEES-GGGTTGG-G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEEES
T ss_pred HHHhccCceeEEEcchhhcccc-CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEEEEc
Confidence 99 3346899999999887764 67999999999877543 334555678888877444
No 21
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.64 E-value=4.6e-15 Score=111.18 Aligned_cols=109 Identities=22% Similarity=0.237 Sum_probs=90.3
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccC
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFR 110 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~ 110 (211)
+.......+.++|||+ |||+|..+..+++..+ .++|+++|.++.+++.|+++++ ....+++++.+|+.+.++...+
T Consensus 11 ~~~~~~~~~~~~vldl-G~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDI-GAGSGSITIEAARLVP--NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHcCCCCCCEEEEe-CCCCCHHHHHHHHHCC--CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 3333445556799999 9999999999998764 4899999999999999999988 3235799999998765544457
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+||.|+++.....+.++++.+.+.|+|||.+++
T Consensus 88 ~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 88 EPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred CCCEEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999999998777888999999999999988765
No 22
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.64 E-value=2.2e-15 Score=128.07 Aligned_cols=130 Identities=16% Similarity=0.086 Sum_probs=96.4
Q ss_pred HHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-
Q 041509 10 TKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG- 88 (211)
Q Consensus 10 ~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~- 88 (211)
..-|...++-.-.++.|.-..++.+.+...++.+|||. |||+|..|.+|++++.+ .|+|+++|.+++.++.|++|++
T Consensus 10 ~e~~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEa-GtGSG~lt~~l~r~v~p-~G~v~t~E~~~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 10 PELWTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEA-GTGSGSLTHALARAVGP-TGHVYTYEFREDRAEKARKNFER 87 (247)
T ss_dssp HHHHHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE---TTSHHHHHHHHHHTT-TSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEe-cCCcHHHHHHHHHHhCC-CeEEEccccCHHHHHHHHHHHHH
Confidence 34566667756678999999999999999999999999 99999999999999975 8999999999999999999999
Q ss_pred -CCCCcEEEEEcchHH-Hhh-hccCCccEEEEcCCcCcHHHHHHHHHhcC-CCCcEEEE
Q 041509 89 -LDASHVEFVIGDAQS-LLL-SHFREADFVLIDCNLENHEGVLRAVQAGN-KPNGAVVV 143 (211)
Q Consensus 89 -~~~~~V~~~~gda~e-~l~-~l~~~fD~VfiD~~~~~y~~~l~~~~~~L-~pgG~viv 143 (211)
++.++|++.++|..+ ..+ .+...+|.||+|-+.+ .+++..+.+.| +|||.+.+
T Consensus 88 ~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~P--w~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 88 HGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDP--WEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp TTCCTTEEEEES-GGCG--STT-TTSEEEEEEESSSG--GGGHHHHHHHE-EEEEEEEE
T ss_pred cCCCCCceeEecceecccccccccCcccEEEEeCCCH--HHHHHHHHHHHhcCCceEEE
Confidence 778899999999963 332 2357899999997754 35567777778 77665544
No 23
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.62 E-value=1.7e-14 Score=118.16 Aligned_cols=121 Identities=18% Similarity=0.163 Sum_probs=97.9
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGD 100 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gd 100 (211)
....++...++...+...+..+|||+ |||+|+.|++++...+ +++|++||.+|++++.|++|++ ...++++++.+|
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDi-G~G~G~~~~~la~~~~--~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDI-GAGTGTIPVEAGLLCP--KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEe-CCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 45566667666666676677899999 9999999999987643 6899999999999999999997 223579999999
Q ss_pred hHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 101 AQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.+.++.+...+|.+++|+. ....+.++.+.+.|+|||.+++...
T Consensus 99 ~~~~~~~~~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 99 APECLAQLAPAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred hHHHHhhCCCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 98866554456899999875 3567899999999999998877554
No 24
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.62 E-value=1.6e-15 Score=127.95 Aligned_cols=119 Identities=23% Similarity=0.161 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhh
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLL 106 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~ 106 (211)
+-+.+..++...++.+|||+ |||||.+|..+++.+++ .++|+++|++++|++.|++.+. ....+|++++||+.++ +
T Consensus 35 wr~~~~~~~~~~~g~~vLDv-~~GtG~~~~~l~~~~~~-~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l-p 111 (233)
T PF01209_consen 35 WRRKLIKLLGLRPGDRVLDV-ACGTGDVTRELARRVGP-NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL-P 111 (233)
T ss_dssp --SHHHHHHT--S--EEEEE-T-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---
T ss_pred HHHHHHhccCCCCCCEEEEe-CCChHHHHHHHHHHCCC-ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh-c
Confidence 34445555667788999999 79999999999988754 7899999999999999999988 3345999999999986 4
Q ss_pred hccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 107 SHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 107 ~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
..+++||.|++-... .+....++++.+.|+|||.+++.|-.-.
T Consensus 112 ~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 112 FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 337899999988643 4678999999999999999998884333
No 25
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.62 E-value=5.1e-15 Score=120.39 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=86.9
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...++++|||+ |||+|++++.++... ++++|++||.++++++.|+++.+ +. ++++++++|+.+.. ..++||+
T Consensus 39 ~~~~~~~vLDi-GcGtG~~s~~la~~~--~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~--~~~~fD~ 112 (181)
T TIGR00138 39 EYLDGKKVIDI-GSGAGFPGIPLAIAR--PELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQ--HEEQFDV 112 (181)
T ss_pred HhcCCCeEEEe-cCCCCccHHHHHHHC--CCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhcc--ccCCccE
Confidence 34568899999 999999999998654 36899999999999999999987 43 46999999998852 2579999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+.++ ..++.+.++.+.+.|+|||.+++.+
T Consensus 113 I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 113 ITSRA-LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred EEehh-hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 99988 5678889999999999999888765
No 26
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.60 E-value=2.1e-14 Score=116.59 Aligned_cols=113 Identities=15% Similarity=0.148 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHH
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSL 104 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~ 104 (211)
+....++...+...++.+|||+ |||+|+.++.+++..+ +++|+++|+++++++.|++|++ ....+++++.+|+...
T Consensus 17 ~~~r~~~~~~l~~~~~~~vLDi-G~G~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~ 93 (187)
T PRK08287 17 EEVRALALSKLELHRAKHLIDV-GAGTGSVSIEAALQFP--SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE 93 (187)
T ss_pred HHHHHHHHHhcCCCCCCEEEEE-CCcCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh
Confidence 3344444445555678899999 9999999999998753 6899999999999999999987 2235799999998543
Q ss_pred hhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 105 LLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 105 l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+.++||+||+++....+.+.++.+.+.|+|||.+++.
T Consensus 94 ---~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 94 ---LPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred ---cCcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEE
Confidence 2468999999987777889999999999998887663
No 27
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.57 E-value=2.4e-14 Score=118.45 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=92.0
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGD 100 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gd 100 (211)
.+..|.....+..++...+..+|||+ |||+|++|..++... ++|+++|.++++++.|+++++ ....+++++.+|
T Consensus 60 ~~~~p~~~~~l~~~l~~~~~~~VLei-G~GsG~~t~~la~~~----~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d 134 (212)
T PRK00312 60 TISQPYMVARMTELLELKPGDRVLEI-GTGSGYQAAVLAHLV----RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD 134 (212)
T ss_pred eeCcHHHHHHHHHhcCCCCCCEEEEE-CCCccHHHHHHHHHh----CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC
Confidence 35677777777777777788999999 999999999888753 589999999999999999997 223569999999
Q ss_pred hHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 101 AQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.+.++. .++||+|++++....+ .+.+.+.|+|||.+++.-
T Consensus 135 ~~~~~~~-~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 135 GWKGWPA-YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAPV 175 (212)
T ss_pred cccCCCc-CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEEE
Confidence 8765543 4789999999876644 455678899999877643
No 28
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.57 E-value=2.6e-15 Score=111.12 Aligned_cols=99 Identities=23% Similarity=0.256 Sum_probs=47.6
Q ss_pred EEEccccHHHHHHHHHHHccCCC-cEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhcc-CCccEEEEcCC
Q 041509 45 VVACANVANATTLALAAAAHQTG-GRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHF-READFVLIDCN 120 (211)
Q Consensus 45 LEi~Gtg~G~stl~la~a~~~~~-g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~-~~fD~VfiD~~ 120 (211)
||+ ||..|+||+++++++++.+ +++++||..+. .+.++++++ ++.++++++.|+..+.++.+. ++||++|+|++
T Consensus 1 lEi-G~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEI-GTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp ---------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred Ccc-ccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 799 9999999999999997643 38999999995 334444444 456789999999999998775 89999999998
Q ss_pred cC--cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 121 LE--NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 121 ~~--~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+. .....++.+.+.|+||| +++.||
T Consensus 79 H~~~~~~~dl~~~~~~l~~gg-viv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGG-VIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEE-EEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCe-EEEEeC
Confidence 64 56788999999999855 666676
No 29
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.55 E-value=8.8e-14 Score=116.05 Aligned_cols=115 Identities=20% Similarity=0.147 Sum_probs=92.5
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l 108 (211)
+.+...+...++++|||+ |||+|..+..+++..++ +++|+++|+++++++.|+++++ ...++++++++|+.+. +..
T Consensus 35 ~~~l~~l~~~~~~~vLDi-GcG~G~~~~~la~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~ 111 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDV-CCGTADWSIALAEAVGP-EGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFD 111 (231)
T ss_pred HHHHHhcCCCCCCEEEEe-CCCcCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCC
Confidence 333344455667899999 99999999999988754 6899999999999999999987 3346899999999875 322
Q ss_pred cCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 109 FREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 109 ~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
.++||+|+++.. ..++.+.++++.+.|+|||.+++.+..
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 579999998753 346788999999999999988877653
No 30
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.53 E-value=7.4e-14 Score=115.24 Aligned_cols=133 Identities=13% Similarity=0.104 Sum_probs=101.3
Q ss_pred HHHHHHHHhhcCC-----cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHH
Q 041509 9 ATKAYLKTLKMGQ-----KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLS 83 (211)
Q Consensus 9 ~~~ay~~~~~~~~-----~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~A 83 (211)
.+..|++.++... ..+++....++..+.. +..+|||+ |||+|..+..++...+ +.+|++||+++++++.|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~VLDi-GcGtG~~~~~la~~~p--~~~v~gVD~s~~~i~~a 80 (202)
T PRK00121 6 RRRGRLTKGQQRAIEELWPRLSPAPLDWAELFGN--DAPIHLEI-GFGKGEFLVEMAKANP--DINFIGIEVHEPGVGKA 80 (202)
T ss_pred hhccccccchhhhhcccchhhcCCCCCHHHHcCC--CCCeEEEE-ccCCCHHHHHHHHHCC--CccEEEEEechHHHHHH
Confidence 3445666544211 2466777788877766 66889999 9999999999988763 57999999999999999
Q ss_pred HHHhc-CCCCcEEEEEcchHHHhhh-c-cCCccEEEEcCCcC-----------cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 84 KKILG-LDASHVEFVIGDAQSLLLS-H-FREADFVLIDCNLE-----------NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 84 r~~~~-~~~~~V~~~~gda~e~l~~-l-~~~fD~VfiD~~~~-----------~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+++++ ....+++++++|+.+.++. + .++||.|++..... .+..+++.+.+.|+|||.+++..+
T Consensus 81 ~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 81 LKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred HHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 99987 2236799999999444442 2 56899999853211 257899999999999999888653
No 31
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.53 E-value=1.6e-13 Score=116.80 Aligned_cols=110 Identities=18% Similarity=0.208 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHh
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLL 105 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l 105 (211)
..+++..+. .++.+|||+ |||+|+.+.+++.. +.+|+++|+++++++.|++++. +..++++++++|+.+..
T Consensus 34 ~~~~l~~l~--~~~~~vLDi-GcG~G~~a~~la~~----g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~ 106 (255)
T PRK11036 34 LDRLLAELP--PRPLRVLDA-GGGEGQTAIKLAEL----GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA 106 (255)
T ss_pred HHHHHHhcC--CCCCEEEEe-CCCchHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh
Confidence 334444442 456899999 99999999999864 5799999999999999999987 55678999999998875
Q ss_pred hhccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEE
Q 041509 106 LSHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+...++||+|++.... .+....++.+.+.|+|||.+++.
T Consensus 107 ~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 107 QHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 4446799999987532 35578899999999999988765
No 32
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.53 E-value=1.7e-13 Score=117.29 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=90.6
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CCCCcEEEEEcchHHHh
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LDASHVEFVIGDAQSLL 105 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~~~~V~~~~gda~e~l 105 (211)
+.+..++...++.+|||+ |||+|..+..+++..++ .++|+++|++++|++.|+++.. ....+++++++|+.+.
T Consensus 63 ~~~~~~~~~~~~~~VLDl-GcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l- 139 (261)
T PLN02233 63 RMAVSWSGAKMGDRVLDL-CCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL- 139 (261)
T ss_pred HHHHHHhCCCCCCEEEEE-CCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-
Confidence 344444555677899999 99999999999887543 5899999999999999987753 2346899999999775
Q ss_pred hhccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 106 LSHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+..+++||+|++... ..+....++++.+.|+|||.+++.|-
T Consensus 140 p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 140 PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 423578999998653 34678899999999999999988774
No 33
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.53 E-value=8.4e-14 Score=109.33 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=86.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc-cCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH-FREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l-~~~fD~Vf 116 (211)
.+..+|||+ |||+|..+..|+..+.+ +++++++|+++++++.|+++++ ...++++|+++|+.+ ++.. .+.||+|+
T Consensus 2 ~~~~~iLDl-GcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDL-GCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIII 78 (152)
T ss_dssp TTTSEEEEE-T-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEE
T ss_pred CCCCEEEEe-cCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEE
Confidence 356899999 99999999999965543 7999999999999999999987 323489999999999 5531 37999999
Q ss_pred EcCCc---CcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 117 IDCNL---ENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 117 iD~~~---~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
..+.. .+....++.+.+.|+++|.+++.+..
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 98643 34567899999999999988877643
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=2.6e-13 Score=115.21 Aligned_cols=126 Identities=17% Similarity=0.175 Sum_probs=96.8
Q ss_pred CCcCChhHHHHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHH
Q 041509 1 MACWSAENATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEY 80 (211)
Q Consensus 1 ~~~~~~~~~~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~ 80 (211)
|-.|||+.... |.+ .+ ...++.+...+...++++|||+ |||+|..+..++...+ +++|++||+++.++
T Consensus 1 ~~~w~~~~Y~~-~~~-~~-------~~~~~~ll~~~~~~~~~~vLDi-GcG~G~~~~~la~~~~--~~~v~gvD~s~~~i 68 (258)
T PRK01683 1 MSDWNPSLYLK-FED-ER-------TRPARDLLARVPLENPRYVVDL-GCGPGNSTELLVERWP--AARITGIDSSPAML 68 (258)
T ss_pred CCCCCHHHHHH-HHH-Hh-------hcHHHHHHhhCCCcCCCEEEEE-cccCCHHHHHHHHHCC--CCEEEEEECCHHHH
Confidence 77899987754 222 11 2234333333455677899999 9999999999998763 68999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEE
Q 041509 81 KLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 81 ~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+.|++++ .+++++.+|+.+..+ .++||+|+..... .+...+++.+.+.|+|||.+++.
T Consensus 69 ~~a~~~~----~~~~~~~~d~~~~~~--~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 69 AEARSRL----PDCQFVEADIASWQP--PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred HHHHHhC----CCCeEEECchhccCC--CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9999875 358899999986643 4699999988643 36788999999999999987774
No 35
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.52 E-value=1.1e-13 Score=125.13 Aligned_cols=105 Identities=13% Similarity=0.094 Sum_probs=86.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCC-CcEEEEEcchHHHhhhc---cCCc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDA-SHVEFVIGDAQSLLLSH---FREA 112 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~-~~V~~~~gda~e~l~~l---~~~f 112 (211)
.++++|||+ |||+|.+++.++.. ...+|++||.++.+++.|++|++ ++. ++++++++|+.+.+..+ .++|
T Consensus 219 ~~g~rVLDl-fsgtG~~~l~aa~~---ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 219 VENKRVLNC-FSYTGGFAVSALMG---GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred cCCCeEEEe-ccCCCHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 467899999 79999988876532 24699999999999999999998 554 58999999999988654 4589
Q ss_pred cEEEEcCCc------------CcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 113 DFVLIDCNL------------ENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 113 D~VfiD~~~------------~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
|+||+|++. ..|.++++.+.++|+|||.++.+.+.
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999999763 24788888999999999988876653
No 36
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.51 E-value=6.6e-13 Score=112.65 Aligned_cols=107 Identities=15% Similarity=0.251 Sum_probs=87.3
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.+..+|||+ |||+|..+..+++.+..++++++++|.+++|++.|++++. +...+++++++|+.+.. .+.+|+|+
T Consensus 55 ~~~~~vLDl-GcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDL-GCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---IENASMVV 130 (247)
T ss_pred CCCCEEEEE-cccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---CCCCCEEe
Confidence 356789999 9999999999988654457899999999999999999997 45668999999998753 24689988
Q ss_pred EcCC-----cCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 117 IDCN-----LENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 117 iD~~-----~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+... ..+....++.+.+.|+|||.+++.|....
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 7532 12346799999999999999999886543
No 37
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.50 E-value=7.5e-13 Score=109.29 Aligned_cols=112 Identities=14% Similarity=0.019 Sum_probs=85.1
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhcc
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~ 109 (211)
++..+....+..+|||+ |||+|..++.++... .++|++||.++++++.|++|++ ...++++++++|+.+.++...
T Consensus 44 l~~~l~~~~~~~~vLDl-~~GsG~l~l~~lsr~---a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~ 119 (199)
T PRK10909 44 LFNWLAPVIVDARCLDC-FAGSGALGLEALSRY---AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPG 119 (199)
T ss_pred HHHHHhhhcCCCEEEEc-CCCccHHHHHHHHcC---CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcC
Confidence 34445444567899999 899999998643322 4699999999999999999998 223579999999998876444
Q ss_pred CCccEEEEcCC-cC-cHHHHHHHHHhc--CCCCcEEEEEec
Q 041509 110 READFVLIDCN-LE-NHEGVLRAVQAG--NKPNGAVVVGYN 146 (211)
Q Consensus 110 ~~fD~VfiD~~-~~-~y~~~l~~~~~~--L~pgG~viv~dn 146 (211)
++||+||+|.+ .. .+.+.++.+.+. |.|++.+++-++
T Consensus 120 ~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 120 TPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 57999999998 33 456677777664 788777776554
No 38
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.49 E-value=6e-13 Score=117.25 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=90.9
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGD 100 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gd 100 (211)
.+..|..-..+...+...+.++|||+ |||+|+.++.+++..+. .++|+++|.++++++.|+++++ ...++++++.+|
T Consensus 62 ~~~~p~l~a~ll~~L~i~~g~~VLDI-G~GtG~~a~~LA~~~~~-~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD 139 (322)
T PRK13943 62 TSSQPSLMALFMEWVGLDKGMRVLEI-GGGTGYNAAVMSRVVGE-KGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGD 139 (322)
T ss_pred cCCcHHHHHHHHHhcCCCCCCEEEEE-eCCccHHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 34455544444344456677899999 99999999999987643 5789999999999999999998 224679999999
Q ss_pred hHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 101 AQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.+.++. .++||.|++++...+. .+.+.+.|+|||.+++..+
T Consensus 140 ~~~~~~~-~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 140 GYYGVPE-FAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred hhhcccc-cCCccEEEECCchHHh---HHHHHHhcCCCCEEEEEeC
Confidence 9877654 4689999999775543 3445677899998877554
No 39
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.48 E-value=3.2e-13 Score=129.97 Aligned_cols=106 Identities=9% Similarity=0.108 Sum_probs=89.3
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCC-CcEEEEEcchHHHhhhccCCcc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDA-SHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~-~~V~~~~gda~e~l~~l~~~fD 113 (211)
...++++|||+ |||+|.++++++.+ ...+|++||.++.+++.|++|++ ++. ++++++++|+.+.+..+.++||
T Consensus 535 ~~~~g~rVLDl-f~gtG~~sl~aa~~---Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 535 QMAKGKDFLNL-FAYTGTASVHAALG---GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFD 610 (702)
T ss_pred HhcCCCeEEEc-CCCCCHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcC
Confidence 33467899999 89999999999874 13579999999999999999998 554 5899999999998876667999
Q ss_pred EEEEcCCc--------------CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 114 FVLIDCNL--------------ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 114 ~VfiD~~~--------------~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+|++|++. ..|.++++.+.++|+|||.++++.|
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred EEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 99999752 2478889999999999998877665
No 40
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.48 E-value=2.4e-13 Score=109.18 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=88.3
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhh
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~ 107 (211)
++|...+...+.++|||+ |||+|..++.++...+ ..+|+++|+++.+++.|++|++ +..+ ++++.+|..+.++
T Consensus 21 ~lL~~~l~~~~~~~vLDl-G~G~G~i~~~la~~~~--~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~- 95 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDL-GCGSGVISLALAKRGP--DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP- 95 (170)
T ss_dssp HHHHHHHHHHTTCEEEEE-TSTTSHHHHHHHHTST--CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC-
T ss_pred HHHHHHHhhccCCeEEEe-cCChHHHHHHHHHhCC--CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc-
Confidence 355554454478899999 8999999999998753 5789999999999999999998 4444 9999999987655
Q ss_pred ccCCccEEEEcCCcC--------cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 108 HFREADFVLIDCNLE--------NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 108 l~~~fD~VfiD~~~~--------~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.++||+|+.+.+.. ...++++.+.+.|+|||.++++-+
T Consensus 96 -~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 96 -DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp -TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 58999999986532 247788899999999999876655
No 41
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.48 E-value=3.8e-13 Score=100.39 Aligned_cols=100 Identities=20% Similarity=0.144 Sum_probs=82.7
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc-cCCccEEEEc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH-FREADFVLID 118 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD 118 (211)
.+|||+ |||+|..++.+++.. ..+++++|+||..++.|++++. +..++++++++|+.+..+.+ .++||+|+.|
T Consensus 2 ~~vlD~-~~G~G~~~~~~~~~~---~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDP-GCGSGTFLLAALRRG---AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEE-TSTTCHHHHHHHHHC---TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEc-CcchHHHHHHHHHHC---CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence 579999 899999999888764 4899999999999999999998 56788999999999987433 6899999998
Q ss_pred CCcC-----------cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CNLE-----------NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~~~-----------~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+-. .|...++.+.++|+|||.+++.-
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6432 35788999999999999887654
No 42
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=4.5e-13 Score=122.69 Aligned_cols=126 Identities=16% Similarity=0.130 Sum_probs=100.6
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..++.....++..++...++++|||+ |||+|..|++++..+.+ .++|+++|+++++++.+++|++ +. ++|+++++
T Consensus 232 ~~~qd~~s~lv~~~l~~~~g~~VLDl-gaG~G~~t~~la~~~~~-~~~v~avDi~~~~l~~~~~n~~~~g~-~~v~~~~~ 308 (444)
T PRK14902 232 ITIQDESSMLVAPALDPKGGDTVLDA-CAAPGGKTTHIAELLKN-TGKVVALDIHEHKLKLIEENAKRLGL-TNIETKAL 308 (444)
T ss_pred EEEEChHHHHHHHHhCCCCCCEEEEe-CCCCCHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeC
Confidence 34566667777777777788899999 79999999999988743 6899999999999999999998 44 45999999
Q ss_pred chHHHhhhccCCccEEEEcCCcC-------------------------cHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCNLE-------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~-------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
|+.+....+.++||+|++|++-. ...++++.+.+.|+|||.++.+...+.+
T Consensus 309 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 309 DARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred CcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 99876543447899999997521 0245788889999999998876665554
No 43
>PLN02244 tocopherol O-methyltransferase
Probab=99.48 E-value=4.8e-13 Score=118.64 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=86.4
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.++++|||| |||+|.++..|+... +.+|++||+++.+++.|+++.+ +..++++++++|+.+. +..+++||+|+
T Consensus 117 ~~~~~VLDi-GCG~G~~~~~La~~~---g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDV-GCGIGGSSRYLARKY---GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEe-cCCCCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEE
Confidence 467899999 999999999999764 5799999999999999999887 5667899999999875 32367999999
Q ss_pred EcCC---cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 117 IDCN---LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 117 iD~~---~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.... ..+...+++++.+.|+|||.+++.+.
T Consensus 192 s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 192 SMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7543 23567899999999999999988763
No 44
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.47 E-value=9.2e-13 Score=114.21 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=90.0
Q ss_pred CChhHHHHHHHHHh----hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEE
Q 041509 24 KEPNEAEFISALAA----GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFV 97 (211)
Q Consensus 24 ~~~~~~~lL~~l~~----~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~ 97 (211)
..|++..++...+. ..++.+|||+ |||+|..++.++...+ +.+|+++|+++++++.|++|++ +..++|+++
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDl-G~GsG~i~~~la~~~~--~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~ 177 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDL-CTGSGCIAIACAYAFP--EAEVDAVDISPDALAVAEINIERHGLEDRVTLI 177 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEE-eCchhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 44566666655433 2346789999 8999999999998763 6799999999999999999998 556789999
Q ss_pred EcchHHHhhhccCCccEEEEcCCc----------------------------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 98 IGDAQSLLLSHFREADFVLIDCNL----------------------------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~~~----------------------------~~y~~~l~~~~~~L~pgG~viv 143 (211)
++|..+.++ .++||+|+.|.+. ..|...++.+.+.|+|||.+++
T Consensus 178 ~~D~~~~~~--~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 178 QSDLFAALP--GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred ECchhhccC--CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 999976553 3589999997431 1246678888889999887765
No 45
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=1.2e-12 Score=119.74 Aligned_cols=151 Identities=16% Similarity=0.253 Sum_probs=112.5
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.++.....++..++...++++|||+ |||+|..|+.+++.+.. .|+|+++|+++++++.+++|++ +. ++|+++++|
T Consensus 235 ~~qd~~s~l~~~~l~~~~g~~VLDl-~ag~G~kt~~la~~~~~-~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D 311 (434)
T PRK14901 235 TVQDRSAQLVAPLLDPQPGEVILDA-CAAPGGKTTHIAELMGD-QGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAAD 311 (434)
T ss_pred EEECHHHHHHHHHhCCCCcCEEEEe-CCCCchhHHHHHHHhCC-CceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 3445556667766777778999999 79999999999988753 6899999999999999999998 44 469999999
Q ss_pred hHHHhh---hccCCccEEEEcCCcC---------c----------------HHHHHHHHHhcCCCCcEEEEEecCCCCC-
Q 041509 101 AQSLLL---SHFREADFVLIDCNLE---------N----------------HEGVLRAVQAGNKPNGAVVVGYNAFRKG- 151 (211)
Q Consensus 101 a~e~l~---~l~~~fD~VfiD~~~~---------~----------------y~~~l~~~~~~L~pgG~viv~dn~~~~~- 151 (211)
+.+... ...++||.|++|++-. + ..+.++.+.+.|+|||.++.+...+.+.
T Consensus 312 ~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~E 391 (434)
T PRK14901 312 SRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAE 391 (434)
T ss_pred hhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhh
Confidence 987642 1246899999997421 0 2567888999999999988877776653
Q ss_pred c------e--ecCCCcEE-----Eeec---CCcEEEEEEec
Q 041509 152 S------W--RSSGSKSQ-----LLPI---GEGLLVTRIAA 176 (211)
Q Consensus 152 ~------~--~~~~~~~v-----~lpi---g~Gl~v~~~~~ 176 (211)
+ + .+|+|+.. ++|- .||+.+++-..
T Consensus 392 ne~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 392 NEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred HHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence 1 1 14555422 3342 47888876543
No 46
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.47 E-value=5.9e-13 Score=112.84 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=99.5
Q ss_pred hHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH
Q 041509 27 NEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL 104 (211)
Q Consensus 27 ~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~ 104 (211)
.-+-||..++.....++|||+ |||+|..++.+|.... ..+|++||+++++++.|++|++ ++.++|+++++|..+.
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDl-GaG~G~l~L~la~r~~--~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~ 107 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDL-GAGNGALGLLLAQRTE--KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEF 107 (248)
T ss_pred cHHHHHHhhcccccCCeEEEe-cCCcCHHHHHHhccCC--CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHh
Confidence 347789999999889999999 8999999888887643 4899999999999999999999 6789999999999999
Q ss_pred hhhc-cCCccEEEEcCCc---------------------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 105 LLSH-FREADFVLIDCNL---------------------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 105 l~~l-~~~fD~VfiD~~~---------------------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+.. ..+||+|+.+.+. .+.+++++.+..+|+|||.+.++.
T Consensus 108 ~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 108 LKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred hhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 8755 3469999987521 135889999999999999998876
No 47
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.47 E-value=1.1e-12 Score=105.85 Aligned_cols=116 Identities=11% Similarity=0.044 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL 105 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l 105 (211)
...+.+|.......++++|||+ |||+|+.+..++.. +.+|+++|.++++++.|++|++....+++++.+|..+..
T Consensus 5 ~~d~~~l~~~l~~~~~~~vLdl-G~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 79 (179)
T TIGR00537 5 AEDSLLLEANLRELKPDDVLEI-GAGTGLVAIRLKGK----GKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV 79 (179)
T ss_pred CccHHHHHHHHHhcCCCeEEEe-CCChhHHHHHHHhc----CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc
Confidence 3344666666667788899999 99999999998864 238999999999999999999822236899999987653
Q ss_pred hhccCCccEEEEcCCcC------------------------cHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 106 LSHFREADFVLIDCNLE------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.++||+|+.+.+.. .+.++++.+.+.|+|||.+++.+....
T Consensus 80 ---~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 80 ---RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred ---CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 45899999875320 146789999999999999988876554
No 48
>PRK00811 spermidine synthase; Provisional
Probab=99.46 E-value=9.6e-13 Score=114.03 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=84.6
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC--CCcEEEEEcchHHHhhhccCC
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD--ASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~--~~~V~~~~gda~e~l~~l~~~ 111 (211)
..+|++||+| |||.|.++.++++. ....+|++||+|+++++.|++++. +. ..+++++.+|+.+.+....++
T Consensus 74 ~~~p~~VL~i-G~G~G~~~~~~l~~--~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~ 150 (283)
T PRK00811 74 HPNPKRVLII-GGGDGGTLREVLKH--PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENS 150 (283)
T ss_pred CCCCCEEEEE-ecCchHHHHHHHcC--CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCc
Confidence 3578999999 99999999888754 235799999999999999999986 22 568999999999988765679
Q ss_pred ccEEEEcCCcC------cH-HHHHHHHHhcCCCCcEEEE
Q 041509 112 ADFVLIDCNLE------NH-EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~VfiD~~~~------~y-~~~l~~~~~~L~pgG~viv 143 (211)
||+|++|...+ .| .++++.+.+.|+|||.+++
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99999996322 12 6788999999999887665
No 49
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.45 E-value=2.1e-12 Score=108.75 Aligned_cols=106 Identities=17% Similarity=0.214 Sum_probs=86.6
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
+..+|||+ |||+|..+..++..+..++++++++|++++|++.|+++++ +...+++++++|+.+.. ...+|+|++
T Consensus 53 ~~~~iLDl-GcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDL-GCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---IKNASMVIL 128 (239)
T ss_pred CCCEEEEe-cCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCCCCEEee
Confidence 56789999 9999999999998765457899999999999999999987 44568999999998753 246898877
Q ss_pred cCCc-----CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 118 DCNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 118 D~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.... .+....++.+.+.|+|||.+++.|....
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 5432 2357789999999999999998876543
No 50
>PRK01581 speE spermidine synthase; Validated
Probab=99.45 E-value=1.2e-12 Score=116.38 Aligned_cols=107 Identities=12% Similarity=0.033 Sum_probs=85.7
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-------C-CCCcEEEEEcchHHHhhh
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-------L-DASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-------~-~~~~V~~~~gda~e~l~~ 107 (211)
+...+|++||+| |+|.|+++..+++. .+..+|+.||+||++++.|+++.. . ...+++++++|+.+.+..
T Consensus 146 ~~h~~PkrVLII-GgGdG~tlrelLk~--~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 146 SKVIDPKRVLIL-GGGDGLALREVLKY--ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS 222 (374)
T ss_pred HhCCCCCEEEEE-CCCHHHHHHHHHhc--CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh
Confidence 445688999999 99999977666653 225799999999999999997321 1 257899999999999887
Q ss_pred ccCCccEEEEcCCcC-------cH-HHHHHHHHhcCCCCcEEEEEe
Q 041509 108 HFREADFVLIDCNLE-------NH-EGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 108 l~~~fD~VfiD~~~~-------~y-~~~l~~~~~~L~pgG~viv~d 145 (211)
..++||+||+|...+ .| .++++.+.+.|+|||.+++-.
T Consensus 223 ~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 677999999996432 34 778999999999988766643
No 51
>PRK04266 fibrillarin; Provisional
Probab=99.44 E-value=1.2e-12 Score=110.10 Aligned_cols=112 Identities=11% Similarity=0.080 Sum_probs=87.1
Q ss_pred HHHHHHH--HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh-
Q 041509 29 AEFISAL--AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL- 105 (211)
Q Consensus 29 ~~lL~~l--~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l- 105 (211)
+.+|..+ +...+..+|||+ |||+|+.++.++...+ .|+|+++|++++|++.++++.+.. .+|.++.+|+.+..
T Consensus 59 ~~ll~~~~~l~i~~g~~VlD~-G~G~G~~~~~la~~v~--~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~ 134 (226)
T PRK04266 59 AAILKGLKNFPIKKGSKVLYL-GAASGTTVSHVSDIVE--EGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPER 134 (226)
T ss_pred HHHHhhHhhCCCCCCCEEEEE-ccCCCHHHHHHHHhcC--CCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcch
Confidence 4455544 566678899999 9999999999998874 689999999999999887776632 67999999986521
Q ss_pred -hhccCCccEEEEcCCcC-cHHHHHHHHHhcCCCCcEEEEE
Q 041509 106 -LSHFREADFVLIDCNLE-NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 106 -~~l~~~fD~VfiD~~~~-~y~~~l~~~~~~L~pgG~viv~ 144 (211)
..+.++||+||.|.... .....++.+.+.|+|||.+++.
T Consensus 135 ~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 135 YAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred hhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 12346799999987543 3345688999999999998883
No 52
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=1.9e-12 Score=118.29 Aligned_cols=126 Identities=15% Similarity=0.127 Sum_probs=101.5
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.++.....++..++...++.+|||+ |||+|..|++++..+.. +|+|+++|+++++++.+++|++ +. ++|+++++|
T Consensus 220 ~~Qd~~s~~~~~~l~~~~g~~VLD~-cagpGgkt~~la~~~~~-~g~V~a~Dis~~rl~~~~~n~~r~g~-~~v~~~~~D 296 (431)
T PRK14903 220 TVQGESSQIVPLLMELEPGLRVLDT-CAAPGGKTTAIAELMKD-QGKILAVDISREKIQLVEKHAKRLKL-SSIEIKIAD 296 (431)
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEe-CCCccHHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECc
Confidence 4555566777777777888899999 69999999999988753 7899999999999999999998 54 469999999
Q ss_pred hHHHhhhccCCccEEEEcCCcC-------------------------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 101 AQSLLLSHFREADFVLIDCNLE-------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~-------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+.+......++||.|++|++-. .+.+.++.+.+.|+|||.++.+...+.+.
T Consensus 297 a~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e 372 (431)
T PRK14903 297 AERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE 372 (431)
T ss_pred hhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh
Confidence 9876433357899999996421 12556888899999999988877777653
No 53
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.44 E-value=8.3e-13 Score=118.79 Aligned_cols=106 Identities=10% Similarity=0.091 Sum_probs=90.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC-CCcEEEEEcchHHHhhhc---cCCc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD-ASHVEFVIGDAQSLLLSH---FREA 112 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~-~~~V~~~~gda~e~l~~l---~~~f 112 (211)
.++++||++| |.||.++++.|.+- ..+||+||.+...++.|++|++ ++ .++++|+++|+.+.+... +.+|
T Consensus 216 ~~GkrvLNlF-sYTGgfSv~Aa~gG---A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 216 AAGKRVLNLF-SYTGGFSVHAALGG---ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred ccCCeEEEec-ccCcHHHHHHHhcC---CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence 3479999997 99999999988752 3499999999999999999999 55 477999999999999876 3499
Q ss_pred cEEEEcCCc------------CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 113 DFVLIDCNL------------ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 113 D~VfiD~~~------------~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
|+|++|++. ++|.+....+.++|+|||.++++.|..
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 999999742 368899999999999999998887744
No 54
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.44 E-value=3.3e-12 Score=109.61 Aligned_cols=125 Identities=12% Similarity=0.086 Sum_probs=96.5
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQ 102 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~ 102 (211)
++.....+...++...++.+|||+ |||+|..|+.++..+.. .|+|+++|+++++++.+++|++ ....+|+++++|+.
T Consensus 55 ~qd~~s~~~~~~l~~~~g~~VLDl-~ag~G~kt~~la~~~~~-~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~ 132 (264)
T TIGR00446 55 IQEASSMIPPLALEPDPPERVLDM-AAAPGGKTTQISALMKN-EGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGR 132 (264)
T ss_pred EECHHHHHHHHHhCCCCcCEEEEE-CCCchHHHHHHHHHcCC-CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHH
Confidence 344444455555666677899999 69999999999988753 6899999999999999999998 22357999999998
Q ss_pred HHhhhccCCccEEEEcCCcC-------------------------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 103 SLLLSHFREADFVLIDCNLE-------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~-------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+... ..+.||.|++|++-. ...++++.+.++|+|||.++.+...+.+.
T Consensus 133 ~~~~-~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~ 205 (264)
T TIGR00446 133 VFGA-AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPE 205 (264)
T ss_pred Hhhh-hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChH
Confidence 7533 356799999996421 12458888889999999888777766553
No 55
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.43 E-value=1.8e-12 Score=106.24 Aligned_cols=105 Identities=14% Similarity=0.084 Sum_probs=85.5
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc--cCCccEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH--FREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l--~~~fD~V 115 (211)
.+..+|||| |||+|.++..+|...+ ++.++++|+++++++.|++++. ....+++++++|+.+.+... .+.+|.|
T Consensus 15 ~~~~~ilDi-GcG~G~~~~~la~~~p--~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 15 NKAPLHLEI-GCGKGRFLIDMAKQNP--DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCCceEEEe-CCCccHHHHHHHHhCC--CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEE
Confidence 355689999 9999999999998763 6899999999999999999987 22358999999999876433 3589999
Q ss_pred EEcCCcC-----------cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCNLE-----------NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~~~-----------~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+++.+.. .+.++++.+.+.|+|||.+++..+
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 9975321 126789999999999999887654
No 56
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.43 E-value=1.5e-12 Score=111.51 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=87.4
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
+...+.++|||+ |||+|..++.++..... .++|+++|+++++++.|+++.. ...++++++.+|+.+. +..++.||+
T Consensus 73 ~~~~~g~~VLDi-G~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-~~~~~~fD~ 149 (272)
T PRK11873 73 AELKPGETVLDL-GSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-PVADNSVDV 149 (272)
T ss_pred ccCCCCCEEEEe-CCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-CCCCCceeE
Confidence 445678899999 99999998888876643 6799999999999999999987 2236899999998764 322568999
Q ss_pred EEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 115 VLIDCN---LENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 115 VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|+.+.. ..+..+.++++.+.|+|||.+++.+-
T Consensus 150 Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 150 IISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 998763 23567899999999999999888653
No 57
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.43 E-value=1.6e-12 Score=119.20 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=98.4
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..++.....+...++...++++|||+ |||+|..|+++++.++. +++|+++|+++++++.++++++ +. ++|+++++
T Consensus 232 ~~vqd~~s~l~~~~l~~~~g~~VLDl-gaG~G~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~ 308 (445)
T PRK14904 232 VSVQNPTQALACLLLNPQPGSTVLDL-CAAPGGKSTFMAELMQN-RGQITAVDRYPQKLEKIRSHASALGI-TIIETIEG 308 (445)
T ss_pred EEEeCHHHHHHHHhcCCCCCCEEEEE-CCCCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeC
Confidence 34444445555556666677899999 79999999999988754 6899999999999999999998 44 57999999
Q ss_pred chHHHhhhccCCccEEEEcCCcC-------------------------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCNLE-------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~-------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
|+.+..+ .++||.|++|++-. ...+.++.+.+.|+|||.++...+.+.+.
T Consensus 309 Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~ 383 (445)
T PRK14904 309 DARSFSP--EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE 383 (445)
T ss_pred ccccccc--CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 9987643 46899999995321 12357888899999999999888777643
No 58
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.42 E-value=3.2e-12 Score=111.99 Aligned_cols=115 Identities=15% Similarity=0.071 Sum_probs=89.2
Q ss_pred CChhHHHHHHHHHh----hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEE
Q 041509 24 KEPNEAEFISALAA----GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFV 97 (211)
Q Consensus 24 ~~~~~~~lL~~l~~----~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~ 97 (211)
..|++..++...+. ..++.+|||+ |||+|..++.++...+ +.+|+++|+++++++.|++|++ ++.++|+++
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDl-G~GsG~iai~la~~~p--~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~ 189 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDL-CTGSGCIAIACAYAFP--DAEVDAVDISPDALAVAEINIERHGLEDRVTLI 189 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEE-echhhHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 34556666554432 1123789999 8999999999998753 6899999999999999999998 556789999
Q ss_pred EcchHHHhhhccCCccEEEEcCCc----------------------------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 98 IGDAQSLLLSHFREADFVLIDCNL----------------------------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~~~----------------------------~~y~~~l~~~~~~L~pgG~viv 143 (211)
++|..+.++ .++||+|+.+.+. ..|...++.+.+.|+|||.+++
T Consensus 190 ~~D~~~~l~--~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 190 ESDLFAALP--GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred ECchhhhCC--CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 999987654 3589999987421 1246778888889999988776
No 59
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.42 E-value=3.6e-12 Score=108.37 Aligned_cols=97 Identities=16% Similarity=0.119 Sum_probs=81.0
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
...++.+|||+ |||+|..+..++...+ +++|+++|+++.+++.|++. +++++++|+.+..+ .++||+|+
T Consensus 26 ~~~~~~~vLDl-GcG~G~~~~~l~~~~p--~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~--~~~fD~v~ 94 (255)
T PRK14103 26 GAERARRVVDL-GCGPGNLTRYLARRWP--GAVIEALDSSPEMVAAARER------GVDARTGDVRDWKP--KPDTDVVV 94 (255)
T ss_pred CCCCCCEEEEE-cCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCCC--CCCceEEE
Confidence 44577899999 9999999999998763 68999999999999999763 48899999987632 57999999
Q ss_pred EcCC---cCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 117 IDCN---LENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 117 iD~~---~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.... ..+....++.+.+.|+|||.+++.
T Consensus 95 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 95 SNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 8763 245688999999999999988774
No 60
>PLN02366 spermidine synthase
Probab=99.41 E-value=4e-12 Score=111.45 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=85.3
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC-CCcEEEEEcchHHHhhhc-cCC
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD-ASHVEFVIGDAQSLLLSH-FRE 111 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~-~~~V~~~~gda~e~l~~l-~~~ 111 (211)
..+|++||+| |+|.|.++.++++. +...+|+.||+|+++++.||+++. ++ ..+++++++|+.+.+... .++
T Consensus 89 ~~~pkrVLiI-GgG~G~~~rellk~--~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~ 165 (308)
T PLN02366 89 IPNPKKVLVV-GGGDGGVLREIARH--SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGT 165 (308)
T ss_pred CCCCCeEEEE-cCCccHHHHHHHhC--CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCC
Confidence 3578999999 99999998888765 235799999999999999999985 23 468999999999998765 568
Q ss_pred ccEEEEcCCcC-------cHHHHHHHHHhcCCCCcEEEE
Q 041509 112 ADFVLIDCNLE-------NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~VfiD~~~~-------~y~~~l~~~~~~L~pgG~viv 143 (211)
||+|++|+..+ ...++++.+.+.|+|||.+++
T Consensus 166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99999997543 136789999999999886644
No 61
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=3e-12 Score=116.84 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=98.2
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
.++.....++..++...++.+|||+ |||+|..|+.+++..+ +++|+++|.++++++.+++|++...-.++++++|+.
T Consensus 227 ~iQd~~s~~~~~~l~~~~g~~VLDl-gaG~G~~t~~la~~~~--~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~ 303 (427)
T PRK10901 227 SVQDAAAQLAATLLAPQNGERVLDA-CAAPGGKTAHILELAP--QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDAR 303 (427)
T ss_pred EEECHHHHHHHHHcCCCCCCEEEEe-CCCCChHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcc
Confidence 3455556666667777788899999 7999999999998763 489999999999999999999822224789999998
Q ss_pred HHhhhc-cCCccEEEEcCCcC-------------------------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 103 SLLLSH-FREADFVLIDCNLE-------------------------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 103 e~l~~l-~~~fD~VfiD~~~~-------------------------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+..... .++||.|++|++-. .+.++++.+.+.|+|||.++.+.+.+.+.
T Consensus 304 ~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~ 378 (427)
T PRK10901 304 DPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE 378 (427)
T ss_pred cchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 653312 46899999997521 12468888899999999998888766653
No 62
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.40 E-value=1.3e-12 Score=92.95 Aligned_cols=92 Identities=28% Similarity=0.266 Sum_probs=74.7
Q ss_pred EEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc---
Q 041509 45 VVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL--- 121 (211)
Q Consensus 45 LEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~--- 121 (211)
||+ |||+|..+..++.. .+.+|+++|+++++++.++++.. ...+.++.+|+.++ +..+++||+|+.-...
T Consensus 1 Ldi-G~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~~~~~~~--~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDI-GCGTGRFAAALAKR---GGASVTGIDISEEMLEQARKRLK--NEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEE-T-TTSHHHHHHHHT---TTCEEEEEES-HHHHHHHHHHTT--TSTEEEEESBTTSS-SS-TT-EEEEEEESHGGGS
T ss_pred CEe-cCcCCHHHHHHHhc---cCCEEEEEeCCHHHHHHHHhccc--ccCchheeehHHhC-ccccccccccccccceeec
Confidence 799 99999999999986 37899999999999999999887 34566999999887 4347899999987532
Q ss_pred CcHHHHHHHHHhcCCCCcEEEE
Q 041509 122 ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 122 ~~y~~~l~~~~~~L~pgG~viv 143 (211)
++..++++++.+.|+|||.+++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 5778999999999999887764
No 63
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.39 E-value=4.3e-12 Score=104.28 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=81.4
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
...++.+|||+ |||+|..+++|++. +.+|+++|+++++++.|+++.+ ....+++++++|..+.. +.++||+|
T Consensus 27 ~~~~~~~vLDi-GcG~G~~a~~La~~----g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~I 99 (197)
T PRK11207 27 KVVKPGKTLDL-GCGNGRNSLYLAAN----GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT--FDGEYDFI 99 (197)
T ss_pred ccCCCCcEEEE-CCCCCHHHHHHHHC----CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC--cCCCcCEE
Confidence 44567899999 99999999999863 5799999999999999999887 22356999999987652 25689999
Q ss_pred EEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCN-----LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~-----~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.-.. ......+++.+.+.|+|||.+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 87543 2246789999999999999865543
No 64
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.39 E-value=4.1e-12 Score=111.99 Aligned_cols=100 Identities=20% Similarity=0.142 Sum_probs=82.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
++.+|||| |||+|+.+..|++ .+++|++||.++++++.|+++.+ +...+|+++++|+.+... ..++||+|+.
T Consensus 131 ~g~~ILDI-GCG~G~~s~~La~----~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDI-GCGGGLLSEPLAR----MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-EGRKFDAVLS 204 (322)
T ss_pred CCCEEEEe-eCCCCHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-ccCCCCEEEE
Confidence 45689999 9999999998875 26799999999999999998876 345689999999987632 3579999997
Q ss_pred cCC---cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DCN---LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~~---~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
-.- ..+....++.+.++|+|||.+++..
T Consensus 205 ~~vLeHv~d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 205 LEVIEHVANPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hhHHHhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 542 3366889999999999999888754
No 65
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.38 E-value=5.2e-12 Score=115.18 Aligned_cols=125 Identities=17% Similarity=0.119 Sum_probs=97.3
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda 101 (211)
++.....++..++...++.+|||+ |||+|+.|+.+++.++ .|+|+++|+++++++.+++|++ +...++++..+|+
T Consensus 222 ~Qd~~s~~~~~~L~~~~g~~VLDl-cag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~ 298 (426)
T TIGR00563 222 VQDASAQWVATWLAPQNEETILDA-CAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG 298 (426)
T ss_pred EECHHHHHHHHHhCCCCCCeEEEe-CCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 455566677777777788999999 6999999999998874 6899999999999999999998 5443455577887
Q ss_pred HHHhhh-ccCCccEEEEcCCcC---------c----------------HHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 102 QSLLLS-HFREADFVLIDCNLE---------N----------------HEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 102 ~e~l~~-l~~~fD~VfiD~~~~---------~----------------y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.+.... ..++||.|++|++-. + ..+.++.+.++|+|||.++.+...+.+.
T Consensus 299 ~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~ 374 (426)
T TIGR00563 299 RGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE 374 (426)
T ss_pred ccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 643221 146899999995311 1 3568888999999999999888877643
No 66
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.38 E-value=8.7e-12 Score=109.49 Aligned_cols=105 Identities=15% Similarity=0.034 Sum_probs=84.0
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...++.+|||+ |||+|..++.+|.. +.+|+++|.++++++.|++|++ +. ++++|+.+|+.+.+....+.||+
T Consensus 170 ~~~~~~~VLDl-~cG~G~~sl~la~~----~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~ 243 (315)
T PRK03522 170 RELPPRSMWDL-FCGVGGFGLHCATP----GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDL 243 (315)
T ss_pred HhcCCCEEEEc-cCCCCHHHHHHHhc----CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeE
Confidence 33457899999 89999999999862 5799999999999999999998 44 68999999999876544468999
Q ss_pred EEEcCCcCcH-HHHHHHHHhcCCCCcEEEEEecCC
Q 041509 115 VLIDCNLENH-EGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 115 VfiD~~~~~y-~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
|++|.+.... ....+.+.+ +.|++.+++..|.-
T Consensus 244 Vv~dPPr~G~~~~~~~~l~~-~~~~~ivyvsc~p~ 277 (315)
T PRK03522 244 VLVNPPRRGIGKELCDYLSQ-MAPRFILYSSCNAQ 277 (315)
T ss_pred EEECCCCCCccHHHHHHHHH-cCCCeEEEEECCcc
Confidence 9999887644 444555544 67778888877643
No 67
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.37 E-value=5.5e-12 Score=108.15 Aligned_cols=106 Identities=12% Similarity=0.052 Sum_probs=85.4
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
+...+..+|||| |||+|..+..++... +++|+++|+++++++.|++++.. .++++++++|+.+. +...++||+|
T Consensus 48 l~l~~~~~VLDi-GcG~G~~a~~la~~~---~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~-~~~~~~FD~V 121 (263)
T PTZ00098 48 IELNENSKVLDI-GSGLGGGCKYINEKY---GAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKK-DFPENTFDMI 121 (263)
T ss_pred CCCCCCCEEEEE-cCCCChhhHHHHhhc---CCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccC-CCCCCCeEEE
Confidence 355677899999 999999999888642 57999999999999999998763 46799999998754 2225789999
Q ss_pred EE-cC----CcCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 116 LI-DC----NLENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 116 fi-D~----~~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
+. ++ ...+...+++.+.+.|+|||.+++.|-.
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 97 32 1236678999999999999999887743
No 68
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.37 E-value=8.4e-13 Score=110.25 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=84.8
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhc--CC-CCcEEEEEcchHHHhhhc-cC
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILG--LD-ASHVEFVIGDAQSLLLSH-FR 110 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~--~~-~~~V~~~~gda~e~l~~l-~~ 110 (211)
++..+..+|||.| +|.||+++..+++ ++ +|+|||.||..+++|+-|-= ++ ...|+++.||+.+.++.+ ++
T Consensus 130 V~~~~G~rVLDtC-~GLGYtAi~a~~r----GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 130 VKVKRGERVLDTC-TGLGYTAIEALER----GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred eccccCCEeeeec-cCccHHHHHHHHc----CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcc
Confidence 3455788999997 9999999987764 45 99999999999999987742 33 447999999999999887 56
Q ss_pred CccEEEEcCCc-----CcH-HHHHHHHHhcCCCCcEEE
Q 041509 111 EADFVLIDCNL-----ENH-EGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 111 ~fD~VfiD~~~-----~~y-~~~l~~~~~~L~pgG~vi 142 (211)
+||+|+-|.+. +.| +++++++.+.|+|||.++
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 79999999754 345 779999999999999865
No 69
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.36 E-value=7.4e-12 Score=112.49 Aligned_cols=115 Identities=17% Similarity=0.057 Sum_probs=89.8
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C-C--CCcEEEEEcchHHH
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L-D--ASHVEFVIGDAQSL 104 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~-~--~~~V~~~~gda~e~ 104 (211)
.++|...+......+|||+ |||+|..++++++..+ ..+|+++|.++.+++.|++|++ . . ..+++++.+|+.+.
T Consensus 217 trllL~~lp~~~~~~VLDL-GCGtGvi~i~la~~~P--~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDL-GCGNGVIGLTLLDKNP--QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHHhCCcccCCeEEEE-eccccHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 3444444443344689999 9999999999998763 6899999999999999999997 2 2 24799999998765
Q ss_pred hhhccCCccEEEEcCCcC--------cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 105 LLSHFREADFVLIDCNLE--------NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 105 l~~l~~~fD~VfiD~~~~--------~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
++ .++||+|+.+.+.. ...++++.+.+.|+|||.++++.|-.
T Consensus 294 ~~--~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~ 343 (378)
T PRK15001 294 VE--PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH 343 (378)
T ss_pred CC--CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecC
Confidence 43 35899999986532 12568888899999999999987754
No 70
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.36 E-value=1.4e-11 Score=104.74 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=79.8
Q ss_pred HHHHHHHHh-hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHh
Q 041509 29 AEFISALAA-GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLL 105 (211)
Q Consensus 29 ~~lL~~l~~-~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l 105 (211)
...+..+.. ..++++|||+ |||+|+.++.++.. . ..+|+++|+||.+++.|++|++ +..+++++..++.
T Consensus 107 ~~~l~~l~~~~~~~~~VLDi-GcGsG~l~i~~~~~-g--~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~---- 178 (250)
T PRK00517 107 RLCLEALEKLVLPGKTVLDV-GCGSGILAIAAAKL-G--AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL---- 178 (250)
T ss_pred HHHHHHHHhhcCCCCEEEEe-CCcHHHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC----
Confidence 334444443 3467899999 99999998876653 1 3579999999999999999998 4445566555432
Q ss_pred hhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 106 LSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+||+|+.+.....+..+++.+.+.|+|||.+++.+
T Consensus 179 -----~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 179 -----KADVIVANILANPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred -----CcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 79999988766667888999999999999887754
No 71
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.35 E-value=4.8e-12 Score=104.70 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=88.2
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCC
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~ 111 (211)
|...+...++.+|+|+ |||+|-||-.|++..+ ++.|++||.|++|++.|++.+ .+.+|..||..+.-+ ..+
T Consensus 22 Lla~Vp~~~~~~v~DL-GCGpGnsTelL~~RwP--~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~p--~~~ 92 (257)
T COG4106 22 LLARVPLERPRRVVDL-GCGPGNSTELLARRWP--DAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWKP--EQP 92 (257)
T ss_pred HHhhCCccccceeeec-CCCCCHHHHHHHHhCC--CCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcCC--CCc
Confidence 4444566788999999 9999999999999985 799999999999999998763 468899999988755 478
Q ss_pred ccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|++|.++. .+++.+.+..+...|.|||.+.|-
T Consensus 93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 93 TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence 999998874 457888999999999999987663
No 72
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.35 E-value=1.9e-11 Score=105.76 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=87.8
Q ss_pred CChhHHHHHHHHHhh---CCC-CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEE
Q 041509 24 KEPNEAEFISALAAG---NNA-QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFV 97 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~---~~~-~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~ 97 (211)
..|++..++...... .++ .+|||+ |||+|..++.++...+ +.+|+++|+++++++.|++|++ +..++++++
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDl-G~GsG~i~l~la~~~~--~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~ 170 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDL-GTGSGCIALALAYEFP--NAEVIAVDISPDALAVAEENAEKNQLEHRVEFI 170 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEE-eccHhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 345555555544322 233 689999 8999999999998763 5799999999999999999998 555679999
Q ss_pred EcchHHHhhhccCCccEEEEcCCc----------------------------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 98 IGDAQSLLLSHFREADFVLIDCNL----------------------------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~~~----------------------------~~y~~~l~~~~~~L~pgG~viv 143 (211)
.+|..+.++ ..+||+|+.+.+- ..|..+++.+.+.|+|||.+++
T Consensus 171 ~~d~~~~~~--~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 171 QSNLFEPLA--GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred ECchhccCc--CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 999987543 2489999987311 1366788888889999887665
No 73
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.35 E-value=9.3e-12 Score=102.11 Aligned_cols=105 Identities=11% Similarity=0.012 Sum_probs=81.3
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhcc
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~ 109 (211)
+...+...++.+|||+ |||+|+.+++|+.. +.+|+++|+++.+++.|+++.+ +. ++++..+|.... + +.
T Consensus 22 l~~~~~~~~~~~vLDi-GcG~G~~a~~la~~----g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~-~-~~ 92 (195)
T TIGR00477 22 VREAVKTVAPCKTLDL-GCGQGRNSLYLSLA----GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAA-A-LN 92 (195)
T ss_pred HHHHhccCCCCcEEEe-CCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhc-c-cc
Confidence 3344455678899999 99999999999863 6799999999999999998876 33 378888887543 2 35
Q ss_pred CCccEEEEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 110 READFVLIDCN-----LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~fD~VfiD~~-----~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++||+|+.... ......+++.+.+.|+|||.+++..
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 68999986532 2356789999999999999865543
No 74
>PLN02823 spermine synthase
Probab=99.34 E-value=1.7e-11 Score=108.69 Aligned_cols=103 Identities=18% Similarity=0.148 Sum_probs=83.8
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C----CCCcEEEEEcchHHHhhhccCCc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L----DASHVEFVIGDAQSLLLSHFREA 112 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~----~~~~V~~~~gda~e~l~~l~~~f 112 (211)
..+|++||.| |+|.|.++.++.+.. ...+|+.||+|++.++.||+++. . ...+++++.+|+.+.+....++|
T Consensus 101 ~~~pk~VLii-GgG~G~~~re~l~~~--~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 101 HPNPKTVFIM-GGGEGSTAREVLRHK--TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCCCEEEEE-CCCchHHHHHHHhCC--CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 3478999999 999999988777632 25789999999999999999986 1 25789999999999997667799
Q ss_pred cEEEEcCCcC--------cH-HHHHH-HHHhcCCCCcEEEE
Q 041509 113 DFVLIDCNLE--------NH-EGVLR-AVQAGNKPNGAVVV 143 (211)
Q Consensus 113 D~VfiD~~~~--------~y-~~~l~-~~~~~L~pgG~viv 143 (211)
|+||+|...+ .| .++++ .+.+.|+|+|.+++
T Consensus 178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 9999996331 12 57787 88999999886554
No 75
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.34 E-value=1.9e-11 Score=111.46 Aligned_cols=103 Identities=26% Similarity=0.243 Sum_probs=84.3
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc---cCCcc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH---FREAD 113 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l---~~~fD 113 (211)
..+.++|||+ |||+|..+++||.. ..+|+++|.++++++.|++|++ ...++++|+.+|+.+.++.+ .++||
T Consensus 290 ~~~~~~vLDl-~cG~G~~sl~la~~----~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 290 LQGEELVVDA-YCGVGTFTLPLAKQ----AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred cCCCCEEEEc-CCCcCHHHHHHHHh----CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCC
Confidence 3456789999 89999999999875 3689999999999999999998 33468999999999877643 35799
Q ss_pred EEEEcCCcCc-HHHHHHHHHhcCCCCcEEEEEec
Q 041509 114 FVLIDCNLEN-HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 114 ~VfiD~~~~~-y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+|++|.+... ..+.++.+.+ ++|++.+++..|
T Consensus 365 ~vi~dPPr~G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 365 VLLLDPPRKGCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred EEEECcCCCCCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 9999998754 6777777665 788787777665
No 76
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.34 E-value=1.9e-11 Score=105.14 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=84.5
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--C--C-CCcEEEEEcchHHHhhhccCCc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--L--D-ASHVEFVIGDAQSLLLSHFREA 112 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~--~-~~~V~~~~gda~e~l~~l~~~f 112 (211)
..+|++||+| |+|+|.++..+++.. ...+++.+|+|+++++.|++++. . . ..+++++.+|+.+.+....++|
T Consensus 70 ~~~p~~VL~i-G~G~G~~~~~ll~~~--~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~y 146 (270)
T TIGR00417 70 HPNPKHVLVI-GGGDGGVLREVLKHK--SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTF 146 (270)
T ss_pred CCCCCEEEEE-cCCchHHHHHHHhCC--CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCc
Confidence 4568899999 999999888777643 25789999999999999999885 1 1 3679999999999887667899
Q ss_pred cEEEEcCCcC-----c--HHHHHHHHHhcCCCCcEEEE
Q 041509 113 DFVLIDCNLE-----N--HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 113 D~VfiD~~~~-----~--y~~~l~~~~~~L~pgG~viv 143 (211)
|+|++|.... . ..++++.+.+.|+|||.+++
T Consensus 147 DvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~ 184 (270)
T TIGR00417 147 DVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVA 184 (270)
T ss_pred cEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEE
Confidence 9999997522 1 36788999999999887765
No 77
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.34 E-value=8.4e-12 Score=108.19 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=84.5
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC-CCcEEEEEcchHHHhh
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD-ASHVEFVIGDAQSLLL 106 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~-~~~V~~~~gda~e~l~ 106 (211)
+++... .+.++||++| |.||.++++.+.+- ..+|++||.+..+++.|++|++ ++ .++++|+.+|+.+.+.
T Consensus 116 ~~v~~~---~~gkrvLnlF-sYTGgfsv~Aa~gG---A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~ 188 (286)
T PF10672_consen 116 KWVRKY---AKGKRVLNLF-SYTGGFSVAAAAGG---AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLK 188 (286)
T ss_dssp HHHHHH---CTTCEEEEET--TTTHHHHHHHHTT---ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHH
T ss_pred HHHHHH---cCCCceEEec-CCCCHHHHHHHHCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH
Confidence 445554 4568999996 99999988876531 3589999999999999999998 54 3789999999999887
Q ss_pred hc--cCCccEEEEcCCc---------CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 107 SH--FREADFVLIDCNL---------ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 107 ~l--~~~fD~VfiD~~~---------~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+ .++||+|++|++. .+|.+.+..+.++|+|||.++.+.|..
T Consensus 189 ~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 189 RLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp HHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred HHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 54 5799999999753 368899999999999999888887743
No 78
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.34 E-value=9.8e-12 Score=103.24 Aligned_cols=99 Identities=9% Similarity=0.015 Sum_probs=82.9
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
++|||| |||+|..+..+++..+ +.+|+++|+++++++.|+++++ ++.++++++.+|+.+. + ..++||+|+...
T Consensus 1 ~~vLDi-GcG~G~~~~~la~~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDF-GCGYGSDLIDLAERHP--HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-FPDTYDLVFGFE 75 (224)
T ss_pred CeEEEE-CCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-CCCCCCEeehHH
Confidence 479999 9999999999988763 5799999999999999999987 6778999999998654 2 246899998643
Q ss_pred ---CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 120 ---NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 120 ---~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
...+...+++.+.+.|+|||.+++.+
T Consensus 76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 76 VIHHIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 23457889999999999999888765
No 79
>PRK14967 putative methyltransferase; Provisional
Probab=99.34 E-value=2.7e-11 Score=101.19 Aligned_cols=104 Identities=18% Similarity=0.144 Sum_probs=81.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+..+|||+ |||+|..++.++.. + .++|+++|+++++++.|++|+.....+++++++|+.+.++ .++||+|+.+
T Consensus 35 ~~~~~vLDl-GcG~G~~~~~la~~-~--~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~n 108 (223)
T PRK14967 35 GPGRRVLDL-CTGSGALAVAAAAA-G--AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSN 108 (223)
T ss_pred CCCCeEEEe-cCCHHHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEEC
Confidence 455789999 99999999988864 1 3699999999999999999988222368999999987643 4789999998
Q ss_pred CCcC------------------------cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 119 CNLE------------------------NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 119 ~~~~------------------------~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+.. .+..+++.+.+.|+|||.+++.....
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 4211 14567888899999999988765444
No 80
>PRK14968 putative methyltransferase; Provisional
Probab=99.34 E-value=3.2e-11 Score=96.85 Aligned_cols=112 Identities=14% Similarity=0.082 Sum_probs=86.7
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCc-EEEEEcchHHHh
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASH-VEFVIGDAQSLL 105 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~-V~~~~gda~e~l 105 (211)
..+|.......+.++|||+ |||+|+.+..++.. +.+++++|.++++++.|++++. +..++ +.++++|..+.+
T Consensus 12 ~~~l~~~~~~~~~~~vLd~-G~G~G~~~~~l~~~----~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~ 86 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEV-GTGSGIVAIVAAKN----GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF 86 (188)
T ss_pred HHHHHHhhhccCCCEEEEE-ccccCHHHHHHHhh----cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc
Confidence 3445555555678899999 99999999998864 5799999999999999999987 43333 999999987754
Q ss_pred hhccCCccEEEEcCCcC------------------------cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 106 LSHFREADFVLIDCNLE------------------------NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~------------------------~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
. .++||+|+.+...- .+..+++.+.+.|+|||.+++....
T Consensus 87 ~--~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 87 R--GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred c--ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 3 34899999875311 1356789999999999988776543
No 81
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.34 E-value=2.3e-11 Score=105.58 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=81.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.++++|||+ |||+|+.++.++.. ...+|+++|+++.+++.|++|+. +...++++..++.... ..++||+|+
T Consensus 158 ~~g~~VLDv-GcGsG~lai~aa~~---g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDV-GCGSGILSIAALKL---GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---IEGKADVIV 230 (288)
T ss_pred CCCCEEEEe-CCChhHHHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---cCCCceEEE
Confidence 356899999 99999999887753 24699999999999999999998 5566788888874322 257899999
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+.....+.+.++.+.+.|+|||.+++..
T Consensus 231 an~~~~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 231 ANILAEVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred EecCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 98776677889999999999998877743
No 82
>PRK08317 hypothetical protein; Provisional
Probab=99.33 E-value=2.7e-11 Score=100.17 Aligned_cols=111 Identities=28% Similarity=0.185 Sum_probs=89.1
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCC
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~ 111 (211)
+...+...++.+|||+ |||+|..+..++....+ .++++++|.++.+++.|+++......+++++.+|+.+. +...++
T Consensus 11 ~~~~~~~~~~~~vLdi-G~G~G~~~~~~a~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~ 87 (241)
T PRK08317 11 TFELLAVQPGDRVLDV-GCGPGNDARELARRVGP-EGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL-PFPDGS 87 (241)
T ss_pred HHHHcCCCCCCEEEEe-CCCCCHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC-CCCCCC
Confidence 3444566678899999 99999999999987632 68999999999999999998544456899999998764 222578
Q ss_pred ccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
||+|+..... .+....++.+.+.|+|||.+++.+
T Consensus 88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 9999987532 467889999999999999888765
No 83
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.33 E-value=3.1e-11 Score=110.59 Aligned_cols=106 Identities=17% Similarity=0.097 Sum_probs=85.8
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc---cCCc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH---FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l---~~~f 112 (211)
...+..+|||+ |||+|..++.+|.. ..+|+++|.++++++.|++|++ ...++++++.+|+.+.+..+ .++|
T Consensus 294 ~~~~~~~VLDl-gcGtG~~sl~la~~----~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 294 DPQPGDRVLDL-FCGLGNFTLPLARQ----AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred cCCCCCEEEEE-eccCCHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCC
Confidence 34456799999 89999999999875 3699999999999999999998 32357999999998876431 4679
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
|+|++|.+.....+.++.+.+ ++|++.+++..|.-
T Consensus 369 D~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 369 DKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred CEEEECcCCcChHHHHHHHHh-cCCCeEEEEEeChH
Confidence 999999987766677777766 57888888887743
No 84
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.32 E-value=1.7e-11 Score=112.91 Aligned_cols=106 Identities=15% Similarity=0.081 Sum_probs=86.8
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
+...++.+|||+ |||+|..++.++... +.+|+++|+++++++.|+++..+...+++|+++|+.+... ..++||+|
T Consensus 262 ~~~~~~~~vLDi-GcG~G~~~~~la~~~---~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I 336 (475)
T PLN02336 262 LDLKPGQKVLDV-GCGIGGGDFYMAENF---DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTY-PDNSFDVI 336 (475)
T ss_pred cCCCCCCEEEEE-eccCCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCC-CCCCEEEE
Confidence 345567899999 999999999998764 5799999999999999999887556789999999876421 14689999
Q ss_pred EEcCCc---CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCNL---ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~~---~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+..... .+....++.+.+.|+|||.+++.+-
T Consensus 337 ~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 337 YSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 986432 3578899999999999999888763
No 85
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.32 E-value=4.7e-11 Score=100.36 Aligned_cols=115 Identities=18% Similarity=0.175 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHhh--CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchH
Q 041509 26 PNEAEFISALAAG--NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQ 102 (211)
Q Consensus 26 ~~~~~lL~~l~~~--~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~ 102 (211)
|.+..++..+... .++.+|||+ |||+|..++.++...+ +.+++++|+++++++.|++++. ...++++++++|+.
T Consensus 71 ~~~~~l~~~~l~~~~~~~~~ilDi-g~G~G~~~~~l~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~ 147 (251)
T TIGR03534 71 PDTEELVEAALERLKKGPLRVLDL-GTGSGAIALALAKERP--DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWF 147 (251)
T ss_pred CChHHHHHHHHHhcccCCCeEEEE-eCcHhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence 4444454444332 245689999 8999999999998764 5799999999999999999998 22357999999998
Q ss_pred HHhhhccCCccEEEEcCCcC-----------------------------cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 103 SLLLSHFREADFVLIDCNLE-----------------------------NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~-----------------------------~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.++ .++||+|+.+.+-. .|...++.+.+.|+|||.+++..
T Consensus 148 ~~~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 148 EPLP--GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred ccCc--CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 7543 57899999864311 13467788889999999877643
No 86
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.31 E-value=2.2e-11 Score=113.42 Aligned_cols=98 Identities=9% Similarity=0.083 Sum_probs=80.3
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+.+|||+ |||+|..++.++...+ +.+|+++|+|+++++.|++|+. ++.++++++.+|..+.++ .++||+|+.+
T Consensus 139 ~~~VLDl-G~GsG~iai~la~~~p--~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILEL-GTGSGCIAISLLCELP--NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--KQKFDFIVSN 213 (506)
T ss_pred CCEEEEc-cCchhHHHHHHHHHCC--CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--CCCccEEEEC
Confidence 4689999 8999999999998764 6899999999999999999987 556789999999876543 4689999986
Q ss_pred CCc-----------------------------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 119 CNL-----------------------------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 119 ~~~-----------------------------~~y~~~l~~~~~~L~pgG~viv 143 (211)
.+- ..|..+++.+.+.|+|||.+++
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 420 1245667778889999998776
No 87
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.31 E-value=3.6e-11 Score=104.89 Aligned_cols=111 Identities=12% Similarity=-0.020 Sum_probs=88.3
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhcc
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~ 109 (211)
+...+...+.++|||+ |||+|..++.+++..+ +.+++.+|. |++++.|+++++ ++.++|+++.+|+.+. + .
T Consensus 141 l~~~~~~~~~~~vlDi-G~G~G~~~~~~~~~~p--~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~-~--~ 213 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDV-GGGIGDISAAMLKHFP--ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S--Y 213 (306)
T ss_pred HHHHcCCCCCCEEEEe-CCchhHHHHHHHHHCC--CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC-C--C
Confidence 3334445567899999 9999999999999874 589999997 789999999988 6778999999998753 1 2
Q ss_pred CCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 110 READFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 110 ~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
..+|+|++.. +.+.....++.+.+.|+|||.+++.|.++.
T Consensus 214 ~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 214 PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 3479988754 222346789999999999999999886554
No 88
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.31 E-value=1.8e-11 Score=105.66 Aligned_cols=106 Identities=15% Similarity=0.075 Sum_probs=80.3
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhcc
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~ 109 (211)
+...+...++.+|||| |||-|..++++|+.. +.+|++|.++++..+.|++.++ ++.+++++...|..++ .
T Consensus 54 ~~~~~~l~~G~~vLDi-GcGwG~~~~~~a~~~---g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----~ 125 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDI-GCGWGGLAIYAAERY---GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----P 125 (273)
T ss_dssp HHTTTT--TT-EEEEE-S-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred HHHHhCCCCCCEEEEe-CCCccHHHHHHHHHc---CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----C
Confidence 3333556788999999 999999999999875 6799999999999999999998 7788999999998764 3
Q ss_pred CCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 110 READFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++||.|+.=. ..++|..+++.+.++|+|||.+++..
T Consensus 126 ~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp -S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 4999988542 34578999999999999998887643
No 89
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.31 E-value=5.1e-11 Score=98.96 Aligned_cols=108 Identities=24% Similarity=0.205 Sum_probs=88.3
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...+..+|||+ |||+|..+..++...+. ..+++++|.++.+++.|++++. +...+++++.+|+.+... ..++||+
T Consensus 48 ~~~~~~~vldi-G~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~ 124 (239)
T PRK00216 48 GVRPGDKVLDL-ACGTGDLAIALAKAVGK-TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-PDNSFDA 124 (239)
T ss_pred CCCCCCeEEEe-CCCCCHHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-CCCCccE
Confidence 34456799999 99999999999988742 6899999999999999999987 345679999999987532 2578999
Q ss_pred EEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 115 VLIDCN---LENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 115 VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
|++... ..+....++.+.+.|+|||.+++.+..
T Consensus 125 I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 125 VTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred EEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 998643 346788999999999999988887643
No 90
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.30 E-value=3.6e-11 Score=106.16 Aligned_cols=116 Identities=16% Similarity=0.037 Sum_probs=92.6
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.+.|..+..+..++...+.+.|||. |||+|..++.++.. +.+++++|+|+++++.|++|++ +..+ ++++++|
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp-~cGtG~~lieaa~~----~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D 238 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDP-FCGTGGFLIEAGLM----GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGD 238 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEEC-CCCCCHHHHHHHHh----CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecc
Confidence 4667777777777777778899999 89999887765532 6899999999999999999998 5444 9999999
Q ss_pred hHHHhhhccCCccEEEEcCCc------------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 101 AQSLLLSHFREADFVLIDCNL------------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~------------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.+. +...+.||.|+.|.+- ..|.+.++.+.+.|+|||.+++..
T Consensus 239 ~~~l-~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 239 ATKL-PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred hhcC-CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 9875 3225789999999541 126889999999999999877654
No 91
>PRK06922 hypothetical protein; Provisional
Probab=99.30 E-value=3.3e-11 Score=113.90 Aligned_cols=114 Identities=14% Similarity=0.063 Sum_probs=89.7
Q ss_pred HHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCC
Q 041509 33 SALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FRE 111 (211)
Q Consensus 33 ~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~ 111 (211)
..+....++.+|||+ |||+|..+..++...+ +++|+++|+++.|++.|+++......+++++++|+.+..... .++
T Consensus 411 ~~i~d~~~g~rVLDI-GCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeS 487 (677)
T PRK06922 411 RIILDYIKGDTIVDV-GAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKES 487 (677)
T ss_pred HHHhhhcCCCEEEEe-CCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCC
Confidence 334455577899999 9999999988888763 789999999999999999987633357899999998742112 578
Q ss_pred ccEEEEcCC----------------cCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 112 ADFVLIDCN----------------LENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 112 fD~VfiD~~----------------~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
||+|+.... ..+..+.++.+.+.|+|||.+++.|..+.
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 999986531 12457889999999999999999887655
No 92
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.30 E-value=2.8e-11 Score=102.40 Aligned_cols=112 Identities=14% Similarity=0.094 Sum_probs=86.9
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
+....++.|.......++.+|||+ |||+|..+..++. .+.+|+++|+++++++.|+++.. .+.++++|+.+
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDi-GcG~G~~~~~l~~----~~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~ 96 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDA-GCGPGWMSRYWRE----RGSQVTALDLSPPMLAQARQKDA----ADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEe-eCCCCHHHHHHHH----cCCeEEEEECCHHHHHHHHhhCC----CCCEEEcCccc
Confidence 445566666555555567899999 9999998888864 26799999999999999998754 24688999876
Q ss_pred HhhhccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 104 LLLSHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
. +..+++||+|+.... ..+....+.++.+.|+|||.+++..
T Consensus 97 ~-~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 97 L-PLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred C-cCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 4 322568999998753 3467889999999999999887754
No 93
>PRK03612 spermidine synthase; Provisional
Probab=99.29 E-value=3.2e-11 Score=112.62 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=83.8
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-------CC-CCcEEEEEcchHHHhhhc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-------LD-ASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-------~~-~~~V~~~~gda~e~l~~l 108 (211)
...++++||++ |||+|..+..+++. +...+|+.||+||++++.||+++. .+ ..+++++++|+.+.+...
T Consensus 294 ~~~~~~rVL~I-G~G~G~~~~~ll~~--~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~ 370 (521)
T PRK03612 294 ASARPRRVLVL-GGGDGLALREVLKY--PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL 370 (521)
T ss_pred hCCCCCeEEEE-cCCccHHHHHHHhC--CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC
Confidence 34578999999 99999998888753 223799999999999999999542 12 368999999999988766
Q ss_pred cCCccEEEEcCCcC-------c-HHHHHHHHHhcCCCCcEEEE
Q 041509 109 FREADFVLIDCNLE-------N-HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 109 ~~~fD~VfiD~~~~-------~-y~~~l~~~~~~L~pgG~viv 143 (211)
.++||+|++|.... . ..++++.+.+.|+|||.+++
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~ 413 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVV 413 (521)
T ss_pred CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEE
Confidence 78999999996432 1 25689999999999887766
No 94
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.29 E-value=5.6e-11 Score=106.78 Aligned_cols=103 Identities=13% Similarity=0.071 Sum_probs=83.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.++++|||+ |||+|..++.+|.. +.+|++||.++.+++.|++|++ ...++++|+.+|+.+.+....++||+|++
T Consensus 232 ~~~~~vLDL-~cG~G~~~l~la~~----~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 232 IPVTQMWDL-FCGVGGFGLHCAGP----DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred cCCCEEEEc-cCCccHHHHHHhhc----CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 456889999 89999999988842 5789999999999999999998 22358999999999887543457999999
Q ss_pred cCCcCc-HHHHHHHHHhcCCCCcEEEEEecC
Q 041509 118 DCNLEN-HEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 118 D~~~~~-y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
|.+... ..+.++.+.. ++|++.+++..|.
T Consensus 307 DPPr~G~~~~~l~~l~~-~~p~~ivyvsc~p 336 (374)
T TIGR02085 307 NPPRRGIGKELCDYLSQ-MAPKFILYSSCNA 336 (374)
T ss_pred CCCCCCCcHHHHHHHHh-cCCCeEEEEEeCH
Confidence 998763 4566677764 6888888888773
No 95
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.28 E-value=7.4e-11 Score=96.98 Aligned_cols=107 Identities=23% Similarity=0.207 Sum_probs=87.5
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
....++.+|||+ |||+|..+..++...+. .++++++|+++.+++.+++++. ...+++++.+|+.+... ..++||+|
T Consensus 35 ~~~~~~~~vldi-G~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~-~~~~~D~i 110 (223)
T TIGR01934 35 IGVFKGQKVLDV-ACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPF-EDNSFDAV 110 (223)
T ss_pred hccCCCCeEEEe-CCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCC-CCCcEEEE
Confidence 334477899999 99999999999988743 4799999999999999999877 44679999999987642 25689999
Q ss_pred EEcC---CcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDC---NLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~---~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++.. ...+....++.+.+.|+|||.+++.+.
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 111 TIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8764 334678899999999999999888764
No 96
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.28 E-value=8.4e-11 Score=100.40 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=87.4
Q ss_pred hhHHHHHHHHH---hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcch
Q 041509 26 PNEAEFISALA---AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDA 101 (211)
Q Consensus 26 ~~~~~lL~~l~---~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda 101 (211)
|++..++..+. ...++.+|||+ |||+|..++.++...+ ..+++++|+++++++.|++|+. ....+++++++|.
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDi-G~GsG~~~~~la~~~~--~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~ 167 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDL-GTGSGAIALALAKERP--DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW 167 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEE-cCcHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence 34444444333 23467789999 8999999999998874 5899999999999999999998 5567899999998
Q ss_pred HHHhhhccCCccEEEEcCCc-----------------------------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 102 QSLLLSHFREADFVLIDCNL-----------------------------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~~~-----------------------------~~y~~~l~~~~~~L~pgG~viv 143 (211)
.+.++ .++||+|+.+.+- ..|..+++.+.++|+|||.+++
T Consensus 168 ~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 168 FEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred cCcCC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 65433 4789999986421 1246677788899999998776
No 97
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.28 E-value=4.2e-11 Score=103.75 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=80.5
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
...++.+|||+ |||+|..+++++.. +.+|+++|.++++++.++++.+...-++++..+|..+.. +.++||+|+
T Consensus 117 ~~~~~~~vLDl-GcG~G~~~~~la~~----g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~--~~~~fD~I~ 189 (287)
T PRK12335 117 QTVKPGKALDL-GCGQGRNSLYLALL----GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS--IQEEYDFIL 189 (287)
T ss_pred hccCCCCEEEe-CCCCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc--ccCCccEEE
Confidence 33567799999 99999999999863 679999999999999999998721127999999986642 367899998
Q ss_pred EcC-----CcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 117 IDC-----NLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 117 iD~-----~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.-. +.+....+++.+.+.|+|||.+++.
T Consensus 190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 764 2235678999999999999985553
No 98
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.28 E-value=2e-11 Score=99.95 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=76.9
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
....-.++||+ |||.|..|..||.. ..+++++|+++.+++.||+.+++. .+|+++.+|..+..| .++||+|+
T Consensus 40 p~~ry~~alEv-GCs~G~lT~~LA~r----Cd~LlavDis~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~~P--~~~FDLIV 111 (201)
T PF05401_consen 40 PRRRYRRALEV-GCSIGVLTERLAPR----CDRLLAVDISPRALARARERLAGL-PHVEWIQADVPEFWP--EGRFDLIV 111 (201)
T ss_dssp TTSSEEEEEEE---TTSHHHHHHGGG----EEEEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT-----SS-EEEEE
T ss_pred CccccceeEec-CCCccHHHHHHHHh----hCceEEEeCCHHHHHHHHHhcCCC-CCeEEEECcCCCCCC--CCCeeEEE
Confidence 33445679999 99999999999876 479999999999999999999853 579999999988766 68999999
Q ss_pred EcC------CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDC------NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~------~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+-. +.++...+++.+...|+|||.+++++
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 873 12244567888889999999998876
No 99
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.28 E-value=1.3e-10 Score=99.17 Aligned_cols=101 Identities=17% Similarity=0.065 Sum_probs=79.6
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh-ccCCccEEEEcC
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS-HFREADFVLIDC 119 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~-l~~~fD~VfiD~ 119 (211)
+.+|||+ |||+|..++.++...+ +.+|+++|+|+++++.|++|++.. .++++++|..+.++. +.++||+|+.|.
T Consensus 87 ~~~vLDl-g~GsG~i~l~la~~~~--~~~v~~vDis~~al~~A~~N~~~~--~~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDL-CCGSGAVGAALAAALD--GIELHAADIDPAAVRCARRNLADA--GGTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEe-cCchHHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHc--CCEEEEeechhhcchhcCCCEeEEEECC
Confidence 3589999 8999999999987753 469999999999999999999822 147899999876543 246899999986
Q ss_pred CcC-----------------------------cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 120 NLE-----------------------------NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 120 ~~~-----------------------------~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+-- .|.++++.+.++|+|||.+++...
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 310 135677777889999998887543
No 100
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=7.4e-11 Score=101.79 Aligned_cols=107 Identities=17% Similarity=0.098 Sum_probs=91.1
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l 108 (211)
++...+...++++|||| |||=|..++++|+.. +.+|+++++|++..+.|++.++ |+..+|+++..|-.++
T Consensus 63 ~~~~kl~L~~G~~lLDi-GCGWG~l~~~aA~~y---~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---- 134 (283)
T COG2230 63 LILEKLGLKPGMTLLDI-GCGWGGLAIYAAEEY---GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---- 134 (283)
T ss_pred HHHHhcCCCCCCEEEEe-CCChhHHHHHHHHHc---CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc----
Confidence 44445667889999999 999999999999875 7899999999999999999887 8888999999998776
Q ss_pred cCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 109 FREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 109 ~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.++||-|+.=+ .+++|..+++.+.+.|+|||.+++..
T Consensus 135 ~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 135 EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 45699998654 34579999999999999988776633
No 101
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.27 E-value=5.9e-11 Score=105.52 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL 105 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l 105 (211)
+.+.-++..+ ......+|||+ |||+|..++.++...+ ..+|+++|+++.+++.|+++++...-..+++.+|..+.
T Consensus 183 ~gt~lLl~~l-~~~~~g~VLDl-GCG~G~ls~~la~~~p--~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~- 257 (342)
T PRK09489 183 VGSQLLLSTL-TPHTKGKVLDV-GCGAGVLSAVLARHSP--KIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD- 257 (342)
T ss_pred HHHHHHHHhc-cccCCCeEEEe-ccCcCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-
Confidence 3333444444 33345689999 9999999999998753 57999999999999999999981112357788887653
Q ss_pred hhccCCccEEEEcCCcC--------cHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 106 LSHFREADFVLIDCNLE--------NHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~--------~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
..++||+|+.+.+.. ...+.++.+.+.|+|||.++++.|.+.+
T Consensus 258 --~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~ 308 (342)
T PRK09489 258 --IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLP 308 (342)
T ss_pred --cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCC
Confidence 357899999986432 2477889999999999999998886554
No 102
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.27 E-value=1.3e-11 Score=90.30 Aligned_cols=94 Identities=27% Similarity=0.250 Sum_probs=72.3
Q ss_pred EEEEccccHHHHHHHHHHHccCC-CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCC--
Q 041509 44 MVVACANVANATTLALAAAAHQT-GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCN-- 120 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~-~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~-- 120 (211)
|||+ |||+|..+..++..++.. ..+++++|+++++++.|+++.....-+++++++|+.++ +...++||+|+.-..
T Consensus 1 ILDl-gcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l-~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDL-GCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL-PFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEE-T-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH-HHHSSSEEEEEE-TTGG
T ss_pred CEEe-ecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC-cccCCCeeEEEEcCCcc
Confidence 7999 999999999999887321 37999999999999999999872122899999999885 445789999998432
Q ss_pred ----cCcHHHHHHHHHhcCCCCc
Q 041509 121 ----LENHEGVLRAVQAGNKPNG 139 (211)
Q Consensus 121 ----~~~y~~~l~~~~~~L~pgG 139 (211)
.++....++.+.++|+|||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 2345789999999999976
No 103
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.26 E-value=9.1e-11 Score=106.27 Aligned_cols=116 Identities=11% Similarity=0.048 Sum_probs=86.1
Q ss_pred ChhHHHHHHHHHhh-CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 25 EPNEAEFISALAAG-NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 25 ~~~~~~lL~~l~~~-~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
.|++-.++..+... .+..+|||+ |||+|..++.++...+ +.+|+++|+|+++++.|++|++....+++++++|..+
T Consensus 235 RpeTE~LVe~aL~~l~~~~rVLDL-GcGSG~IaiaLA~~~p--~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e 311 (423)
T PRK14966 235 RPETEHLVEAVLARLPENGRVWDL-GTGSGAVAVTVALERP--DAFVRASDISPPALETARKNAADLGARVEFAHGSWFD 311 (423)
T ss_pred CccHHHHHHHhhhccCCCCEEEEE-eChhhHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhc
Confidence 34455555555432 345689999 8999999999887653 6899999999999999999998333489999999866
Q ss_pred HhhhccCCccEEEEcCCc----------------------------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 104 LLLSHFREADFVLIDCNL----------------------------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~----------------------------~~y~~~l~~~~~~L~pgG~viv 143 (211)
......++||+|+.+.+. ..|.++++.+.+.|+|||.+++
T Consensus 312 ~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 312 TDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred cccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 421124589999997632 0245677777788999887665
No 104
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.26 E-value=6.1e-11 Score=98.26 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=82.3
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.++++|||+ |||+|..+..++...+ ..+++++|.++++++.+++++. .+++++.+|+.+... ..++||+|+..
T Consensus 33 ~~~~~vLDl-G~G~G~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~-~~~~fD~vi~~ 105 (240)
T TIGR02072 33 FIPASVLDI-GCGTGYLTRALLKRFP--QAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKLPL-EDSSFDLIVSN 105 (240)
T ss_pred CCCCeEEEE-CCCccHHHHHHHHhCC--CCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhCCC-CCCceeEEEEh
Confidence 346789999 9999999999998764 5789999999999999988765 478999999987632 35789999987
Q ss_pred CCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
... .+....++.+.+.|+|||.+++..
T Consensus 106 ~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 106 LALQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 532 356789999999999999887753
No 105
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.25 E-value=1.3e-10 Score=104.56 Aligned_cols=106 Identities=14% Similarity=0.106 Sum_probs=86.2
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc-cCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH-FREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l-~~~fD~V 115 (211)
......+||| |||+|..++.+|...+ +..+++||+++.+++.|.+++. ...++|+++.+|+.+++..+ ++++|.|
T Consensus 120 ~~~~p~vLEI-GcGsG~~ll~lA~~~P--~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 120 KNQEKILIEI-GFGSGRHLLYQAKNNP--NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCCCeEEEE-cCcccHHHHHHHHhCC--CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 3455689999 9999999999998864 6899999999999999999987 32467999999998765433 5799999
Q ss_pred EEcCCcC---------cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 116 LIDCNLE---------NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 116 fiD~~~~---------~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++..+.+ .....++.+.+.|+|||.+.+..+
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred EEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9864321 126789999999999998877654
No 106
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.25 E-value=1e-10 Score=105.46 Aligned_cols=100 Identities=17% Similarity=0.058 Sum_probs=81.7
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
+...++++|||| |||+|..+..+++.. +.+|+++|+++++++.|+++.++. .+++..+|..+. .++||.|
T Consensus 163 l~l~~g~rVLDI-GcG~G~~a~~la~~~---g~~V~giDlS~~~l~~A~~~~~~l--~v~~~~~D~~~l----~~~fD~I 232 (383)
T PRK11705 163 LQLKPGMRVLDI-GCGWGGLARYAAEHY---GVSVVGVTISAEQQKLAQERCAGL--PVEIRLQDYRDL----NGQFDRI 232 (383)
T ss_pred hCCCCCCEEEEe-CCCccHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHhccC--eEEEEECchhhc----CCCCCEE
Confidence 344577899999 999999999998764 579999999999999999998743 488999998654 4789999
Q ss_pred EEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDC-----NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~-----~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.-. ...++..+++.+.+.|+|||.+++.+
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 8543 23467889999999999999887754
No 107
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.25 E-value=2.1e-10 Score=93.93 Aligned_cols=103 Identities=9% Similarity=-0.071 Sum_probs=79.9
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc--cC-Cc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH--FR-EA 112 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l--~~-~f 112 (211)
..+..+|||+ +||+|..++.++... ..+|+.||.++++++.+++|++ +..++++++.+|+.+.+..+ .. .|
T Consensus 47 ~~~g~~vLDL-faGsG~lglea~srg---a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~ 122 (189)
T TIGR00095 47 EIQGAHLLDV-FAGSGLLGEEALSRG---AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFD 122 (189)
T ss_pred hcCCCEEEEe-cCCCcHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCc
Confidence 3467899999 799999999887652 3589999999999999999998 55568999999998877644 22 48
Q ss_pred cEEEEcCCcC--cHHHHHHHHHh--cCCCCcEEEEEe
Q 041509 113 DFVLIDCNLE--NHEGVLRAVQA--GNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~--~y~~~l~~~~~--~L~pgG~viv~d 145 (211)
|+||+|.+.. .+.+.++.+.. +|+++| ++++.
T Consensus 123 dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~-iiv~E 158 (189)
T TIGR00095 123 NVIYLDPPFFNGALQALLELCENNWILEDTV-LIVVE 158 (189)
T ss_pred eEEEECcCCCCCcHHHHHHHHHHCCCCCCCe-EEEEE
Confidence 9999998654 46667776655 466654 55555
No 108
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.23 E-value=1.4e-10 Score=95.99 Aligned_cols=99 Identities=12% Similarity=0.015 Sum_probs=76.4
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
....++.+|||+ |||+|+.+..|+..++ +.++++||+++++++.|++++. +++++.+|+.+ +..+++||+|
T Consensus 39 ~~~~~~~~VLDi-GCG~G~~~~~L~~~~~--~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~--~~~~~sfD~V 109 (204)
T TIGR03587 39 NRLPKIASILEL-GANIGMNLAALKRLLP--FKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFD--PFKDNFFDLV 109 (204)
T ss_pred HhcCCCCcEEEE-ecCCCHHHHHHHHhCC--CCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccC--CCCCCCEEEE
Confidence 344567789999 9999999999988763 6899999999999999998753 46788999887 3236799999
Q ss_pred EEcCCc-----CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNL-----ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~-----~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+...-. .+..+.++++.+.+ ++.+++++
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 987532 24577888888876 45566544
No 109
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.22 E-value=1.9e-10 Score=96.12 Aligned_cols=118 Identities=17% Similarity=0.136 Sum_probs=92.0
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
.+.+...+++.......++.+|||+ |||+|.++..+++. +.+++++|.++++++.|++++......++++.+++.
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~vLdi-G~G~G~~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 105 (233)
T PRK05134 31 RINPLRLNYIREHAGGLFGKRVLDV-GCGGGILSESMARL----GADVTGIDASEENIEVARLHALESGLKIDYRQTTAE 105 (233)
T ss_pred HhhHHHHHHHHHhccCCCCCeEEEe-CCCCCHHHHHHHHc----CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHH
Confidence 3445555667666666678899999 99999998888753 468999999999999999988722236889999998
Q ss_pred HHhhhccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 103 SLLLSHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+......++||+|++... ..+....++.+.+.|+|||.+++..
T Consensus 106 ~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 106 ELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred HhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 876433579999988642 2356778999999999999888764
No 110
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.22 E-value=7.8e-11 Score=96.09 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=79.8
Q ss_pred HHHHHHHhh-CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhh
Q 041509 30 EFISALAAG-NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLL 106 (211)
Q Consensus 30 ~lL~~l~~~-~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~ 106 (211)
.+...+... ....++||+| +|+|..++..++. ...+|+.||.|++.++..++|++ +..++++++.+|+...+.
T Consensus 31 alFniL~~~~~~g~~vLDLF-aGSGalGlEALSR---GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~ 106 (183)
T PF03602_consen 31 ALFNILQPRNLEGARVLDLF-AGSGALGLEALSR---GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLL 106 (183)
T ss_dssp HHHHHHHCH-HTT-EEEETT--TTSHHHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHH
T ss_pred HHHHHhcccccCCCeEEEcC-CccCccHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHH
Confidence 344455444 5788999996 9999999865443 24799999999999999999999 666789999999998886
Q ss_pred hc---cCCccEEEEcCCcC--c-HHHHHHHHH--hcCCCCcEEEE
Q 041509 107 SH---FREADFVLIDCNLE--N-HEGVLRAVQ--AGNKPNGAVVV 143 (211)
Q Consensus 107 ~l---~~~fD~VfiD~~~~--~-y~~~l~~~~--~~L~pgG~viv 143 (211)
.+ ..+||+||+|++-. . |.+.++.+. .+|+++|.+++
T Consensus 107 ~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 107 KLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp HHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred hhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEE
Confidence 65 57999999998654 3 477888887 56887655444
No 111
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.21 E-value=2.6e-10 Score=102.07 Aligned_cols=98 Identities=15% Similarity=0.080 Sum_probs=80.2
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhcc-----------
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHF----------- 109 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~----------- 109 (211)
.+|||+ +||+|..|+.++... .+|++||.++++++.|++|++ ...++++|+.+|+.+.++.+.
T Consensus 208 ~~vLDl-~~G~G~~sl~la~~~----~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~ 282 (362)
T PRK05031 208 GDLLEL-YCGNGNFTLALARNF----RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGI 282 (362)
T ss_pred CeEEEE-eccccHHHHHHHhhC----CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccc
Confidence 579999 799999999888763 589999999999999999998 324589999999999876431
Q ss_pred ----CCccEEEEcCCcCc-HHHHHHHHHhcCCCCcEEEEEecC
Q 041509 110 ----READFVLIDCNLEN-HEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 110 ----~~fD~VfiD~~~~~-y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
.+||+||+|.+... +.+.++.+.+ |++.++|..|.
T Consensus 283 ~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 283 DLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred cccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEEeCH
Confidence 15899999998653 5667777765 57888888775
No 112
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.21 E-value=2.2e-10 Score=101.03 Aligned_cols=102 Identities=11% Similarity=0.001 Sum_probs=79.5
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...++++|||| |||+|+.+..++... ..+|++||.++.++..++..-+ +...+|+++.+|+.+. +. .++||+
T Consensus 119 ~~l~g~~VLDI-GCG~G~~~~~la~~g---~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-~~~FD~ 192 (322)
T PRK15068 119 SPLKGRTVLDV-GCGNGYHMWRMLGAG---AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-LKAFDT 192 (322)
T ss_pred CCCCCCEEEEe-ccCCcHHHHHHHHcC---CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-cCCcCE
Confidence 34567899999 999999999988753 3579999999998876544322 3345799999999876 43 678999
Q ss_pred EEEcCC---cCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 115 VLIDCN---LENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 115 VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
||.-+. ..+....++.+.+.|+|||.+++.
T Consensus 193 V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 193 VFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EEECChhhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 997543 235688999999999999988763
No 113
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.19 E-value=2e-10 Score=101.92 Aligned_cols=101 Identities=14% Similarity=0.052 Sum_probs=82.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
+..+|||+ |||+|..++.+++..+ +.+++++|.++++++.|+++.. ..+++++.+|+.+. +...++||+|+...
T Consensus 113 ~~~~VLDL-GcGtG~~~l~La~~~~--~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~l-p~~~~sFDvVIs~~ 186 (340)
T PLN02490 113 RNLKVVDV-GGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDL-PFPTDYADRYVSAG 186 (340)
T ss_pred CCCEEEEE-ecCCcHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhC-CCCCCceeEEEEcC
Confidence 45789999 9999999999988763 5799999999999999999865 34689999999874 32257899999865
Q ss_pred Cc---CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 120 NL---ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 120 ~~---~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.. .+....++++.+.|+|||.+++.+.
T Consensus 187 ~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 187 SIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 32 3557899999999999999877653
No 114
>PTZ00146 fibrillarin; Provisional
Probab=99.19 E-value=2.5e-10 Score=99.10 Aligned_cols=104 Identities=12% Similarity=0.033 Sum_probs=77.9
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~~l~~~fD~V 115 (211)
..+..+|||+ |||+|+.|..+|..+.+ .|+|++||+++++.+...+..+. ..+|.++.+|+..- ...+.+.+|+|
T Consensus 130 IkpG~~VLDL-GaG~G~~t~~lAdiVG~-~G~VyAVD~s~r~~~dLl~~ak~-r~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPGSKVLYL-GAASGTTVSHVSDLVGP-EGVVYAVEFSHRSGRDLTNMAKK-RPNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred cCCCCEEEEe-CCcCCHHHHHHHHHhCC-CCEEEEEECcHHHHHHHHHHhhh-cCCCEEEECCccChhhhhcccCCCCEE
Confidence 4566789999 89999999999998854 68999999998765444433321 25789999998642 12124689999
Q ss_pred EEcCCcCcH-HHHHHHHHhcCCCCcEEEEE
Q 041509 116 LIDCNLENH-EGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 116 fiD~~~~~y-~~~l~~~~~~L~pgG~viv~ 144 (211)
|+|....+. ..++..+.+.|+|+|.+++.
T Consensus 207 ~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 207 FADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 999865543 44556788899999998883
No 115
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.18 E-value=4.6e-10 Score=100.18 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=79.9
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc---------c-
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH---------F- 109 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l---------~- 109 (211)
+++|||+ |||+|..++.|+... .+|++||.++++++.|++|++ ...++++|+.+|+.+.++.. .
T Consensus 198 ~~~vlDl-~~G~G~~sl~la~~~----~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 272 (353)
T TIGR02143 198 KGDLLEL-YCGNGNFSLALAQNF----RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKG 272 (353)
T ss_pred CCcEEEE-eccccHHHHHHHHhC----CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccc
Confidence 3579999 899999999998764 489999999999999999998 33457999999999987641 1
Q ss_pred -----CCccEEEEcCCcCc-HHHHHHHHHhcCCCCcEEEEEecC
Q 041509 110 -----READFVLIDCNLEN-HEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 110 -----~~fD~VfiD~~~~~-y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
..||+||+|.+... ..+.++.+.+ |++.++|..|.
T Consensus 273 ~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvsC~p 313 (353)
T TIGR02143 273 IDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYISCNP 313 (353)
T ss_pred cccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEEcCH
Confidence 13899999998653 5667777765 67888887764
No 116
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=4.8e-10 Score=89.71 Aligned_cols=102 Identities=15% Similarity=0.043 Sum_probs=76.4
Q ss_pred HHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccE
Q 041509 35 LAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 35 l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
.+...+..+|||+ |||+|..|..++.. +++|+++|.|+.+++.+++++.. .++++++++|+.+.... ...||.
T Consensus 8 ~~~~~~~~~vLEi-G~G~G~lt~~l~~~----~~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~~~-~~~~d~ 80 (169)
T smart00650 8 AANLRPGDTVLEI-GPGKGALTEELLER----AARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFDLP-KLQPYK 80 (169)
T ss_pred hcCCCCcCEEEEE-CCCccHHHHHHHhc----CCeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCCcc-ccCCCE
Confidence 3344566789999 99999999999865 47999999999999999999874 35899999999987432 346999
Q ss_pred EEEcCCcCcHHHHHHHHHhc--CCCCcEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAG--NKPNGAVVV 143 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~--L~pgG~viv 143 (211)
||.+.+.....+.+..+... +.++|.+++
T Consensus 81 vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 81 VVGNLPYNISTPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred EEECCCcccHHHHHHHHHhcCCCcceEEEEE
Confidence 99887654444555555543 334454444
No 117
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.18 E-value=6.1e-10 Score=92.22 Aligned_cols=115 Identities=16% Similarity=0.106 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHhh----CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcc
Q 041509 26 PNEAEFISALAAG----NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGD 100 (211)
Q Consensus 26 ~~~~~lL~~l~~~----~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gd 100 (211)
+...+++...+.. .++.+|||+ |||+|+++..++.. +.+++++|.++++++.+++++. ....++++..+|
T Consensus 27 ~~~~~~i~~~~~~~~~~~~~~~vLdl-G~G~G~~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d 101 (224)
T TIGR01983 27 PLRLDYIRDTIRKNKKPLFGLRVLDV-GCGGGLLSEPLARL----GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTS 101 (224)
T ss_pred HHHHHHHHHHHHhcccCCCCCeEEEE-CCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCC
Confidence 3344555555542 347889999 99999999888763 4579999999999999999887 222369999999
Q ss_pred hHHHhhhccCCccEEEEcC---CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 101 AQSLLLSHFREADFVLIDC---NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~---~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.+......++||+|++.. ...+....++.+.+.|+|||.+++..
T Consensus 102 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 102 VEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 9887543347899999864 23466789999999999999877754
No 118
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.18 E-value=2.6e-10 Score=98.04 Aligned_cols=96 Identities=17% Similarity=0.064 Sum_probs=75.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCC-cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTG-GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~-g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+..+|||+ |||+|+.+..++...+..+ .+++++|+++++++.|+++. .++++.++|+.+. +..+++||+|+.-
T Consensus 85 ~~~~vLDi-GcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~l-p~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDI-GCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRL-PFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEE-CCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecccC-CCcCCceeEEEEe
Confidence 45789999 9999999999998775422 48999999999999998763 3588999998764 4236789999965
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.... .++++.+.|+|||.++++.
T Consensus 159 ~~~~----~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 159 YAPC----KAEELARVVKPGGIVITVT 181 (272)
T ss_pred cCCC----CHHHHHhhccCCCEEEEEe
Confidence 4433 3567788899999988764
No 119
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.17 E-value=3e-10 Score=94.70 Aligned_cols=99 Identities=17% Similarity=0.063 Sum_probs=75.1
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C------------CCCcEEEEEcchHHHhh
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L------------DASHVEFVIGDAQSLLL 106 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~------------~~~~V~~~~gda~e~l~ 106 (211)
++.+||++ |||.|.-++|||.. +-+|++||++|.+++.|.+... . ...+|+++++|..+.-.
T Consensus 34 ~~~rvLd~-GCG~G~da~~LA~~----G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 34 AGARVFVP-LCGKSLDLAWLAEQ----GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCeEEEe-CCCchhHHHHHHhC----CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 55799999 99999999999963 6799999999999998644221 0 13469999999987643
Q ss_pred hccCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 107 SHFREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 107 ~l~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
...++||.|+--+ +.+...++++.+.++|+|||.+++
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 3346788886322 334567899999999999986444
No 120
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.17 E-value=4.9e-10 Score=79.04 Aligned_cols=98 Identities=27% Similarity=0.276 Sum_probs=79.3
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
+++|+ |||.|..+..++. . ...+++++|.+++..+.+++... ....+++++.+|..+......++||+|+.+...
T Consensus 1 ~ildi-g~G~G~~~~~~~~-~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDL-GCGTGALALALAS-G--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEE-cCCccHHHHHHhc-C--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccce
Confidence 48999 9999999888876 2 36899999999999999986544 445789999999998764225789999998754
Q ss_pred C----cHHHHHHHHHhcCCCCcEEEEE
Q 041509 122 E----NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 122 ~----~y~~~l~~~~~~L~pgG~viv~ 144 (211)
. .+..+++.+.+.|+|+|.+++.
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 4688899999999998887763
No 121
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.17 E-value=8.1e-10 Score=97.15 Aligned_cols=118 Identities=8% Similarity=-0.078 Sum_probs=85.1
Q ss_pred cCCChhHHHHHH--HHH---hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcE
Q 041509 22 KAKEPNEAEFIS--ALA---AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHV 94 (211)
Q Consensus 22 ~~~~~~~~~lL~--~l~---~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V 94 (211)
..++.++..-+. .+. ...++++|||+ |||+|+.+..++... ..+|++||.++.++..++..-+ ....++
T Consensus 98 ~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDv-GCG~G~~~~~~~~~g---~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v 173 (314)
T TIGR00452 98 IKIDSEWRSDIKWDRVLPHLSPLKGRTILDV-GCGSGYHMWRMLGHG---AKSLVGIDPTVLFLCQFEAVRKLLDNDKRA 173 (314)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEe-ccCCcHHHHHHHHcC---CCEEEEEcCCHHHHHHHHHHHHHhccCCCe
Confidence 356667654322 222 34567899999 999999988887542 3589999999999876543222 234678
Q ss_pred EEEEcchHHHhhhccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 95 EFVIGDAQSLLLSHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 95 ~~~~gda~e~l~~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+..+++.+.-. ..+||.||.-+- ..+..+.++++.+.|+|||.+++.+
T Consensus 174 ~~~~~~ie~lp~--~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 174 ILEPLGIEQLHE--LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEECCHHHCCC--CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999877632 458999998753 2356789999999999999988754
No 122
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.17 E-value=9.6e-12 Score=90.48 Aligned_cols=94 Identities=20% Similarity=0.128 Sum_probs=61.7
Q ss_pred EEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCc-
Q 041509 45 VVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH-FREADFVLIDCNL- 121 (211)
Q Consensus 45 LEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~- 121 (211)
||+ |||+|..+.+++...+ ..+++++|+++.+++.|++++. ....+++.+..+..+..... .++||+|+.-.-.
T Consensus 1 Ldi-GcG~G~~~~~l~~~~~--~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDI-GCGTGRLLRALLEELP--DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EE-STTTS-TTTTHHHHC---EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEe-CccChHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 799 9999999999998873 7999999999999999998887 33344555555554443322 3599999986432
Q ss_pred --CcHHHHHHHHHhcCCCCcEE
Q 041509 122 --ENHEGVLRAVQAGNKPNGAV 141 (211)
Q Consensus 122 --~~y~~~l~~~~~~L~pgG~v 141 (211)
++...+++.+.++|+|||.+
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 46688999999999998864
No 123
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.16 E-value=1.4e-10 Score=97.45 Aligned_cols=114 Identities=17% Similarity=0.117 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHhh---CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 26 PNEAEFISALAAG---NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 26 ~~~~~lL~~l~~~---~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
|..-.++..-+.. ..+.+|||+ |||-|..+.+||+. +.+||++|.++++++.|+.+.....-.|++....+.
T Consensus 42 ~~rl~~i~~~~~~~~~l~g~~vLDv-GCGgG~Lse~mAr~----Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~e 116 (243)
T COG2227 42 PLRLDYIREVARLRFDLPGLRVLDV-GCGGGILSEPLARL----GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVE 116 (243)
T ss_pred cchhhhhhhhhhcccCCCCCeEEEe-cCCccHhhHHHHHC----CCeeEEecCChHHHHHHHHhhhhccccccchhhhHH
Confidence 3333444444443 467899999 99999999999974 789999999999999999988711224889999999
Q ss_pred HHhhhccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 103 SLLLSHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+.... .++||+|..--- .++-..+++.|.++++|||.+++..
T Consensus 117 dl~~~-~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 117 DLASA-GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred HHHhc-CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEec
Confidence 88663 589999986532 2355779999999999988777644
No 124
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.16 E-value=5.1e-10 Score=94.74 Aligned_cols=107 Identities=17% Similarity=0.105 Sum_probs=89.4
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCC----CcEEEEEeCChhHHHHHHHHhc--CCC--CcEEEEEcchHHHhhhc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQT----GGRVVCILRRVEEYKLSKKILG--LDA--SHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~----~g~v~tiE~~~~~~~~Ar~~~~--~~~--~~V~~~~gda~e~l~~l 108 (211)
...+..++||+ ++|||..|..+...+... .++|+.+|+||+|++.+++... ++. .++++++|||.++ |..
T Consensus 97 ~p~~~m~~lDv-aGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-pFd 174 (296)
T KOG1540|consen 97 GPGKGMKVLDV-AGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-PFD 174 (296)
T ss_pred CCCCCCeEEEe-cCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-CCC
Confidence 44456789999 699999999999988531 3899999999999999999885 443 3499999999987 444
Q ss_pred cCCccEEEEcCCcC---cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 109 FREADFVLIDCNLE---NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 109 ~~~fD~VfiD~~~~---~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++.||...+...-+ +.++.++++.+.|+|||.+.+.+
T Consensus 175 d~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 78999999987654 56889999999999999998766
No 125
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.15 E-value=1.8e-09 Score=94.37 Aligned_cols=107 Identities=19% Similarity=0.101 Sum_probs=81.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C-CCCcEEEEEcchHHHhhhccC----Ccc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L-DASHVEFVIGDAQSLLLSHFR----EAD 113 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~-~~~~V~~~~gda~e~l~~l~~----~fD 113 (211)
++.+|||+ |||+|..|..|+++++. +.++++||++++|++.|++++. . ..-+|++++||..+.++-... ...
T Consensus 63 ~~~~iLEL-GcGtG~~t~~Ll~~l~~-~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 63 AGCELVEL-GSGSSRKTRLLLDALRQ-PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCeEEec-CCCcchhHHHHHHhhcc-CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 45789999 99999999999998753 5799999999999999999987 2 234688899999775432211 334
Q ss_pred EEEEcCCc-----CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 114 FVLIDCNL-----ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 114 ~VfiD~~~-----~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
++|++... ++-.+.++.+.+.|+|||.+++.-|..
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 55555432 234678999999999999888755544
No 126
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=3.9e-10 Score=98.07 Aligned_cols=113 Identities=11% Similarity=-0.023 Sum_probs=83.1
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHh
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLL 105 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l 105 (211)
.-++|..+.. ++++|||+ |||+|..++..+.- ...+|+++|+||.+++.|++|.+ +....++.-..+..+..
T Consensus 152 cL~~Le~~~~--~g~~vlDv-GcGSGILaIAa~kL---GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~ 225 (300)
T COG2264 152 CLEALEKLLK--KGKTVLDV-GCGSGILAIAAAKL---GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP 225 (300)
T ss_pred HHHHHHHhhc--CCCEEEEe-cCChhHHHHHHHHc---CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc
Confidence 3456666654 78999999 99999988887763 24789999999999999999998 33333445555555543
Q ss_pred hhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 106 LSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
. .++||+|+.+--.+-.......+.++|+|||.++. ..++.
T Consensus 226 ~--~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIl-SGIl~ 266 (300)
T COG2264 226 E--NGPFDVIVANILAEVLVELAPDIKRLLKPGGRLIL-SGILE 266 (300)
T ss_pred c--cCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEE-EeehH
Confidence 3 47999999765334456778888889999887765 44554
No 127
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.14 E-value=8.1e-10 Score=95.73 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=89.0
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC-CCcEEEEEcchHH
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD-ASHVEFVIGDAQS 103 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~-~~~V~~~~gda~e 103 (211)
..++..++.. +|++||.| |.|.|..+-.+.+... -.+++.||+||+.++.||+.+. +. ..|++++.+|+.+
T Consensus 66 l~h~~~~ah~-~pk~VLii-GgGdG~tlRevlkh~~--ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~ 141 (282)
T COG0421 66 LAHVPLLAHP-NPKRVLII-GGGDGGTLREVLKHLP--VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE 141 (282)
T ss_pred HHhchhhhCC-CCCeEEEE-CCCccHHHHHHHhcCC--cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH
Confidence 3344444444 45899999 9999988777776542 5899999999999999999997 22 4899999999999
Q ss_pred HhhhccCCccEEEEcCCcC-c------HHHHHHHHHhcCCCCcEEEE
Q 041509 104 LLLSHFREADFVLIDCNLE-N------HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~~-~------y~~~l~~~~~~L~pgG~viv 143 (211)
.+.+..++||+|++|..-+ . -.++++.+.+.|+++|.++.
T Consensus 142 ~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~ 188 (282)
T COG0421 142 FLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVA 188 (282)
T ss_pred HHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEE
Confidence 9987666899999997543 2 28899999999999886554
No 128
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=8.4e-10 Score=95.62 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=84.9
Q ss_pred CChhHHHHHHHHH--hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEc
Q 041509 24 KEPNEAEFISALA--AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIG 99 (211)
Q Consensus 24 ~~~~~~~lL~~l~--~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~g 99 (211)
..|++-.++..+. ....+.+|||+ |||+|..++.++...+ ..+|+++|+||++++.|++|.. ++ .++.++.+
T Consensus 92 Pr~dTe~Lve~~l~~~~~~~~~ilDl-GTGSG~iai~la~~~~--~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~ 167 (280)
T COG2890 92 PRPDTELLVEAALALLLQLDKRILDL-GTGSGAIAIALAKEGP--DAEVIAVDISPDALALARENAERNGL-VRVLVVQS 167 (280)
T ss_pred cCCchHHHHHHHHHhhhhcCCcEEEe-cCChHHHHHHHHhhCc--CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEee
Confidence 4556666666532 12222279999 8999999999998874 5899999999999999999998 55 77788888
Q ss_pred chHHHhhhccCCccEEEEcCC---c-------------------------CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCN---L-------------------------ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~---~-------------------------~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
|..+-+ .++||+|+.+.+ . ..|.++++.+...|+|||.+++ .-.+.
T Consensus 168 dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~~ 241 (280)
T COG2890 168 DLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGLT 241 (280)
T ss_pred eccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECCC
Confidence 766554 459999997642 0 1246677777778888665544 43333
No 129
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.13 E-value=4.7e-10 Score=103.36 Aligned_cols=110 Identities=17% Similarity=0.110 Sum_probs=84.6
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH-hhhccCCc
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL-LLSHFREA 112 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~-l~~l~~~f 112 (211)
.++...+.++|||+ |||+|..+..|+.. ..+|++||.++++++.+++.. +...+++++++|+.+. ++...++|
T Consensus 31 ~~l~~~~~~~vLDl-GcG~G~~~~~la~~----~~~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 31 SLLPPYEGKSVLEL-GAGIGRFTGELAKK----AGQVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred hhcCccCCCEEEEe-CCCcCHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHh-ccCCceEEEEecccccccCCCCCCE
Confidence 33344456789999 99999999999875 469999999999999886532 3346799999999642 23225789
Q ss_pred cEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 113 DFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 113 D~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
|+|++..... ...+.++.+.+.|+|||.+++.|+.+.
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 9999875322 246789999999999999988887654
No 130
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=6.5e-10 Score=94.82 Aligned_cols=127 Identities=11% Similarity=0.015 Sum_probs=94.0
Q ss_pred HHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC
Q 041509 13 YLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD 90 (211)
Q Consensus 13 y~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~ 90 (211)
|--.|+-.-.++.+....++-++....++.+|+|- |||+|..+.++++++.+ .|+++++|.++..++.|++.|+ +.
T Consensus 78 WTl~LphRTQI~Yt~Dia~I~~~L~i~PGsvV~Es-GTGSGSlShaiaraV~p-tGhl~tfefH~~Ra~ka~eeFr~hgi 155 (314)
T KOG2915|consen 78 WTLALPHRTQILYTPDIAMILSMLEIRPGSVVLES-GTGSGSLSHAIARAVAP-TGHLYTFEFHETRAEKALEEFREHGI 155 (314)
T ss_pred hhhhccCcceEEecccHHHHHHHhcCCCCCEEEec-CCCcchHHHHHHHhhCc-CcceEEEEecHHHHHHHHHHHHHhCC
Confidence 33334433345555555666666788999999999 99999999999999975 8999999999999999999998 88
Q ss_pred CCcEEEEEcchHHHhhhc-cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 91 ASHVEFVIGDAQSLLLSH-FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 91 ~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.++|++.+-|....-... ...+|.||+|-+.+ ...+..+.+.|+.+|+-++
T Consensus 156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaP--w~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGSGFLIKSLKADAVFLDLPAP--WEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred CcceEEEEeecccCCccccccccceEEEcCCCh--hhhhhhhHHHhhhcCceEE
Confidence 899999999986432111 56899999997654 2233344445555564333
No 131
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.11 E-value=8.3e-10 Score=92.36 Aligned_cols=99 Identities=17% Similarity=0.082 Sum_probs=76.3
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C------------CCCcEEEEEcchHHHhh
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L------------DASHVEFVIGDAQSLLL 106 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~------------~~~~V~~~~gda~e~l~ 106 (211)
+..+||++ |||.|..++|||.. +-+|++||+++.+++.|.+.-. . ...+|++.++|+.+..+
T Consensus 37 ~~~rvL~~-gCG~G~da~~LA~~----G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 37 AGSRVLVP-LCGKSLDMLWLAEQ----GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCeEEEe-CCCChHhHHHHHhC----CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 45789999 99999999999862 6799999999999998643211 0 13679999999998754
Q ss_pred hccCCccEEE-----EcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 107 SHFREADFVL-----IDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 107 ~l~~~fD~Vf-----iD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
...+.||+|+ +-.+.+...++++.+.++|+|||.+++
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 4346889998 223444668899999999999985443
No 132
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.10 E-value=1.4e-10 Score=101.04 Aligned_cols=101 Identities=12% Similarity=0.058 Sum_probs=74.0
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.++++|||+ |||+|..++..+.. ...+|+++|+||.+++.|++|++ +..+++++. ...+. ..++||+|+
T Consensus 160 ~~g~~vLDv-G~GSGILaiaA~kl---GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~---~~~~~dlvv 230 (295)
T PF06325_consen 160 KPGKRVLDV-GCGSGILAIAAAKL---GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL---VEGKFDLVV 230 (295)
T ss_dssp STTSEEEEE-S-TTSHHHHHHHHT---TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT---CCS-EEEEE
T ss_pred cCCCEEEEe-CCcHHHHHHHHHHc---CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc---ccccCCEEE
Confidence 456899999 99999988877753 24689999999999999999998 666777663 22222 248999999
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.+--..-.......+.++|+|||.+++ ..++.
T Consensus 231 ANI~~~vL~~l~~~~~~~l~~~G~lIl-SGIl~ 262 (295)
T PF06325_consen 231 ANILADVLLELAPDIASLLKPGGYLIL-SGILE 262 (295)
T ss_dssp EES-HHHHHHHHHHCHHHEEEEEEEEE-EEEEG
T ss_pred ECCCHHHHHHHHHHHHHhhCCCCEEEE-ccccH
Confidence 777666667777788888999776665 44443
No 133
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.10 E-value=2.6e-09 Score=87.01 Aligned_cols=110 Identities=19% Similarity=0.123 Sum_probs=83.5
Q ss_pred HHHHHHHh-hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhh
Q 041509 30 EFISALAA-GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLL 106 (211)
Q Consensus 30 ~lL~~l~~-~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~ 106 (211)
.+...+.. .....++||++ +|+|..++..++. ...+++.||.|.+.....++|++ +...+++++.+|+...|+
T Consensus 32 alFNil~~~~i~g~~~LDlF-AGSGaLGlEAlSR---GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~ 107 (187)
T COG0742 32 ALFNILAPDEIEGARVLDLF-AGSGALGLEALSR---GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALK 107 (187)
T ss_pred HHHHhccccccCCCEEEEec-CCccHhHHHHHhC---CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHH
Confidence 34444544 37889999996 9999988876654 25799999999999999999999 556899999999998888
Q ss_pred hccCC--ccEEEEcCCcC--cHHHHHHHHH----hcCCCCcEEEE
Q 041509 107 SHFRE--ADFVLIDCNLE--NHEGVLRAVQ----AGNKPNGAVVV 143 (211)
Q Consensus 107 ~l~~~--fD~VfiD~~~~--~y~~~l~~~~----~~L~pgG~viv 143 (211)
.+... ||+||+|.+-. .+......+. ..|+|++.+++
T Consensus 108 ~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 108 QLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred hcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEE
Confidence 77554 99999998754 3322333333 45898665544
No 134
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.09 E-value=2.5e-09 Score=96.49 Aligned_cols=98 Identities=20% Similarity=0.107 Sum_probs=81.3
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEEcCC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
.+|||+ +||+|..++.++...+ ..+|+++|.|+++++.+++|++ ...++++++++|+.+.+.. .++||+|++|..
T Consensus 59 ~~vLDl-~aGsG~~~l~~a~~~~--~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~~~fD~V~lDP~ 134 (382)
T PRK04338 59 ESVLDA-LSASGIRGIRYALETG--VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-ERKFDVVDIDPF 134 (382)
T ss_pred CEEEEC-CCcccHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-cCCCCEEEECCC
Confidence 589999 8999999999987653 3589999999999999999998 3345688999999988764 568999999985
Q ss_pred cCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 121 LENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 121 ~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+.-..+++.+...++++|.+++.
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEE
Confidence 44467778877778888888775
No 135
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.08 E-value=6.6e-10 Score=94.58 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=81.2
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---C--CCCcEEEEEcchHHHhhhccC-C
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---L--DASHVEFVIGDAQSLLLSHFR-E 111 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~--~~~~V~~~~gda~e~l~~l~~-~ 111 (211)
..+|++||-| |.|.|.++-.+.+.- +..+|+.||+||+..+.|++.+. . ...+++++.+|+...+.+..+ +
T Consensus 74 ~~~p~~VLii-GgG~G~~~~ell~~~--~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 74 HPNPKRVLII-GGGDGGTARELLKHP--PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp SSST-EEEEE-ESTTSHHHHHHTTST--T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CCCcCceEEE-cCCChhhhhhhhhcC--CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 3479999999 999998877776432 24799999999999999999987 2 257999999999999987666 8
Q ss_pred ccEEEEcCCcC------cH-HHHHHHHHhcCCCCcEEEE
Q 041509 112 ADFVLIDCNLE------NH-EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~VfiD~~~~------~y-~~~l~~~~~~L~pgG~viv 143 (211)
||+|++|...+ .| .++++.+.+.|+|+|.+++
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVL 189 (246)
T ss_dssp EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEE
Confidence 99999997542 12 7899999999999776554
No 136
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.4e-09 Score=94.43 Aligned_cols=116 Identities=12% Similarity=0.122 Sum_probs=91.8
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQ 102 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~ 102 (211)
++..+--||..+-.... .+|||+ |||.|+.++.+++..| ..+++-+|.|..+++.||+|+. +..++.+++.+|..
T Consensus 143 lD~GS~lLl~~l~~~~~-~~vlDl-GCG~Gvlg~~la~~~p--~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~ 218 (300)
T COG2813 143 LDKGSRLLLETLPPDLG-GKVLDL-GCGYGVLGLVLAKKSP--QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLY 218 (300)
T ss_pred cChHHHHHHHhCCccCC-CcEEEe-CCCccHHHHHHHHhCC--CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccc
Confidence 44444445555544434 489999 9999999999999864 6899999999999999999999 44444488888887
Q ss_pred HHhhhccCCccEEEEcCCcCc-----H---HHHHHHHHhcCCCCcEEEEEec
Q 041509 103 SLLLSHFREADFVLIDCNLEN-----H---EGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~~-----y---~~~l~~~~~~L~pgG~viv~dn 146 (211)
+-.. ++||+|+.+.+..+ + ++.++.+.+.|++||.+.++-|
T Consensus 219 ~~v~---~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 219 EPVE---GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cccc---ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 6543 49999999876542 1 5788899999999999988888
No 137
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.07 E-value=2.4e-09 Score=98.80 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=99.7
Q ss_pred cCCChhHHHHHHHHH--hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEE
Q 041509 22 KAKEPNEAEFISALA--AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVI 98 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~--~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~ 98 (211)
..++...+.+...++ ...++.+|||+| ++.|.-|..||..+.. .|.|+++|+++..++..++|++ ....+|.+.+
T Consensus 93 ~yvQd~sS~l~~~~L~~~~~pg~~VLD~C-AAPGgKTt~la~~l~~-~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~ 170 (470)
T PRK11933 93 FYIQEASSMLPVAALFADDNAPQRVLDMA-AAPGSKTTQIAALMNN-QGAIVANEYSASRVKVLHANISRCGVSNVALTH 170 (470)
T ss_pred EEEECHHHHHHHHHhccCCCCCCEEEEeC-CCccHHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 345555666666655 557889999996 9999999999998864 6899999999999999999998 2246799999
Q ss_pred cchHHHhhhccCCccEEEEcCCcC-------c------------------HHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 99 GDAQSLLLSHFREADFVLIDCNLE-------N------------------HEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 99 gda~e~l~~l~~~fD~VfiD~~~~-------~------------------y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
.|+......+.+.||.|++|++=+ + ..+.++.+.++|+|||.++-+.+.+.+
T Consensus 171 ~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 171 FDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 999876444456899999996411 0 156788888899999988777777665
No 138
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.07 E-value=2.3e-09 Score=88.98 Aligned_cols=96 Identities=18% Similarity=0.118 Sum_probs=73.9
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++++|||+ |||+|..+.+++.. +.+|+++|+++++++.|++++. +..+++++.++|+.+. .++||+|
T Consensus 53 ~~~~~~vLDi-GcG~G~~~~~la~~----~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~fD~i 123 (219)
T TIGR02021 53 PLKGKRVLDA-GCGTGLLSIELAKR----GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----CGEFDIV 123 (219)
T ss_pred CCCCCEEEEE-eCCCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----CCCcCEE
Confidence 3467899999 99999999999863 5699999999999999999987 3346899999998764 2789999
Q ss_pred EEcCC-----cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 116 LIDCN-----LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 116 fiD~~-----~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+.-.- ..+....++.+.+.+++ |.++.
T Consensus 124 i~~~~l~~~~~~~~~~~l~~i~~~~~~-~~~i~ 155 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALGHLASLTKE-RVIFT 155 (219)
T ss_pred EEhhHHHhCCHHHHHHHHHHHHHHhCC-CEEEE
Confidence 86321 12345677788777765 44444
No 139
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.06 E-value=1.7e-09 Score=89.88 Aligned_cols=96 Identities=18% Similarity=0.100 Sum_probs=72.5
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hh----hc-cC
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LL----SH-FR 110 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~----~l-~~ 110 (211)
..++.+|||+ |||+|..+..+++.... .++|++||+++. .. ..+|+++++|+.+. ++ .+ .+
T Consensus 49 ~~~~~~VLDl-G~GtG~~t~~l~~~~~~-~~~V~aVDi~~~---------~~-~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDL-GAAPGGWSQYAVTQIGD-KGRVIACDILPM---------DP-IVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEE-cccCCHHHHHHHHHcCC-CceEEEEecccc---------cC-CCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 3567789999 99999999999987643 689999999981 11 13589999998763 21 12 56
Q ss_pred CccEEEEcCCcC-------c-------HHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLE-------N-------HEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~-------~-------y~~~l~~~~~~L~pgG~viv~d 145 (211)
+||+|+.|.... + ....++.+.+.|+|||.+++..
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 899999986321 1 1467899999999999888744
No 140
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.06 E-value=2.6e-10 Score=96.78 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=93.4
Q ss_pred cCChhHHHHHHHHHhhcCCc-CCChhHHHHHHHHH---hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChh
Q 041509 3 CWSAENATKAYLKTLKMGQK-AKEPNEAEFISALA---AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVE 78 (211)
Q Consensus 3 ~~~~~~~~~ay~~~~~~~~~-~~~~~~~~lL~~l~---~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~ 78 (211)
-|.++.....+++.+...|- .+......-..... ...-+++|||+ |||.|..+..||+- +..|++||.+++
T Consensus 48 ~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDv-GCGgGLLSepLArl----ga~V~GID~s~~ 122 (282)
T KOG1270|consen 48 TWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDV-GCGGGLLSEPLARL----GAQVTGIDASDD 122 (282)
T ss_pred cccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEe-ccCccccchhhHhh----CCeeEeecccHH
Confidence 37777777777777665431 12211111110011 11223679999 99999999999974 789999999999
Q ss_pred HHHHHHHHhc--CC-CC----cEEEEEcchHHHhhhccCCccEEEEcCCcC---cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 79 EYKLSKKILG--LD-AS----HVEFVIGDAQSLLLSHFREADFVLIDCNLE---NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 79 ~~~~Ar~~~~--~~-~~----~V~~~~gda~e~l~~l~~~fD~VfiD~~~~---~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+++.|++... .. .. ++++.+.++.+. .+.||.|+.---.+ +..+.++.+.++|+|+|.+++.+
T Consensus 123 ~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 123 MVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred HHHHHHHhhhcCchhccccceeeehhhcchhhc----ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 9999999954 22 23 578888888765 35699998653333 45788999999999999998865
No 141
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.06 E-value=2.6e-09 Score=88.65 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=71.8
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.++.+|||+ |||+|+.+..++.. +.+|+++|.++++++.|++++. +..+++++..+|.. ...++||+|+
T Consensus 62 ~~~~~vLDv-GcG~G~~~~~l~~~----~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDA-GCGVGSLSIPLARR----GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SLLGRFDTVV 132 (230)
T ss_pred CCCCEEEEE-eCCCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hccCCcCEEE
Confidence 456799999 99999999999864 4679999999999999999987 44468999999932 2357899998
Q ss_pred EcCCc-----CcHHHHHHHHHhcCCCCcEEEE
Q 041509 117 IDCNL-----ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 117 iD~~~-----~~y~~~l~~~~~~L~pgG~viv 143 (211)
..... +.....++.+.+.+. +|.++.
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~ 163 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTR-GSLIFT 163 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcC-CeEEEE
Confidence 75322 244567777776554 344443
No 142
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=2e-09 Score=98.44 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=89.1
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhcc--CCc
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHF--REA 112 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~--~~f 112 (211)
+...+.+++||+ .||+|.+|++||.. ..+|+++|+++++++.|++|.+ ...++++|..+++.++.+... ..+
T Consensus 289 ~~~~~~~~vlDl-YCGvG~f~l~lA~~----~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 289 LELAGGERVLDL-YCGVGTFGLPLAKR----VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred HhhcCCCEEEEe-ccCCChhhhhhccc----CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCC
Confidence 445566899999 89999999999953 5799999999999999999999 444569999999999988653 588
Q ss_pred cEEEEcCCcCcH-HHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 113 DFVLIDCNLENH-EGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 113 D~VfiD~~~~~y-~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
|.|++|.++.-- .+.++.+.+ +.|...++|..|...
T Consensus 364 d~VvvDPPR~G~~~~~lk~l~~-~~p~~IvYVSCNP~T 400 (432)
T COG2265 364 DVVVVDPPRAGADREVLKQLAK-LKPKRIVYVSCNPAT 400 (432)
T ss_pred CEEEECCCCCCCCHHHHHHHHh-cCCCcEEEEeCCHHH
Confidence 999999987644 477777776 456789999888543
No 143
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=4.9e-09 Score=85.29 Aligned_cols=119 Identities=15% Similarity=0.076 Sum_probs=85.9
Q ss_pred CCcCCChhHHHHHHHHHh---hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEE
Q 041509 20 GQKAKEPNEAEFISALAA---GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEF 96 (211)
Q Consensus 20 ~~~~~~~~~~~lL~~l~~---~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~ 96 (211)
.|+..++..+..+...+. ....+.|+|+ |||||..++..+.. ...+|++||+||++++.+++|...+..+|+|
T Consensus 22 EQY~Tp~~~Aa~il~~a~~~g~l~g~~V~Dl-G~GTG~La~ga~~l---Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f 97 (198)
T COG2263 22 EQYRTPAPLAAYILWVAYLRGDLEGKTVLDL-GAGTGILAIGAALL---GASRVLAVDIDPEALEIARANAEELLGDVEF 97 (198)
T ss_pred eecCCChHHHHHHHHHHHHcCCcCCCEEEEc-CCCcCHHHHHHHhc---CCcEEEEEecCHHHHHHHHHHHHhhCCceEE
Confidence 455666666654444443 3457789999 99999987766543 2479999999999999999999855678999
Q ss_pred EEcchHHHhhhccCCccEEEEcCCcCc-----HHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 97 VIGDAQSLLLSHFREADFVLIDCNLEN-----HEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 97 ~~gda~e~l~~l~~~fD~VfiD~~~~~-----y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+++|+.++ ..++|.++++.+... =..+++.+++. ...++-.+|+-+
T Consensus 98 ~~~dv~~~----~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~---s~vVYsiH~a~~ 148 (198)
T COG2263 98 VVADVSDF----RGKFDTVIMNPPFGSQRRHADRPFLLKALEI---SDVVYSIHKAGS 148 (198)
T ss_pred EEcchhhc----CCccceEEECCCCccccccCCHHHHHHHHHh---hheEEEeecccc
Confidence 99999876 578999999976541 14455555553 345666666543
No 144
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.05 E-value=2.3e-09 Score=83.47 Aligned_cols=106 Identities=19% Similarity=0.103 Sum_probs=77.7
Q ss_pred ChhHHHHHHHHHh-hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 25 EPNEAEFISALAA-GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 25 ~~~~~~lL~~l~~-~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
.....+++..+.. ..+.++|||+ |||+|..+..++.. +.+++++|+++.+++. .++....-+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~vLDi-GcG~G~~~~~l~~~----~~~~~g~D~~~~~~~~---------~~~~~~~~~~~~ 71 (161)
T PF13489_consen 6 YRAYADLLERLLPRLKPGKRVLDI-GCGTGSFLRALAKR----GFEVTGVDISPQMIEK---------RNVVFDNFDAQD 71 (161)
T ss_dssp CHCHHHHHHHHHTCTTTTSEEEEE-SSTTSHHHHHHHHT----TSEEEEEESSHHHHHH---------TTSEEEEEECHT
T ss_pred HHHHHHHHHHHhcccCCCCEEEEE-cCCCCHHHHHHHHh----CCEEEEEECCHHHHhh---------hhhhhhhhhhhh
Confidence 4456677777775 5678899999 99999988888553 4599999999999887 112222222222
Q ss_pred HhhhccCCccEEEEcCCc---CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 104 LLLSHFREADFVLIDCNL---ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~---~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
... ..++||+|+.-.-. .+...+++.+.++|+|||.+++.+
T Consensus 72 ~~~-~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 72 PPF-PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp HHC-HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred hhc-cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEE
Confidence 222 36899999987543 356889999999999988887765
No 145
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.04 E-value=7.1e-10 Score=88.74 Aligned_cols=74 Identities=22% Similarity=0.182 Sum_probs=57.0
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhcc-CC-ccEEEE
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHF-RE-ADFVLI 117 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~-~~-fD~Vfi 117 (211)
+.|+|+| ||.|--|+.+|+. ..+|++||+||..++.|+.|.+ |..++|++++||+.+.++.+. .. +|+||+
T Consensus 1 ~~vlD~f-cG~GGNtIqFA~~----~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAF-CGVGGNTIQFART----FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT--TTSHHHHHHHHT----T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEec-cCcCHHHHHHHHh----CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 3689995 9999999999986 4689999999999999999999 778999999999999987653 22 899999
Q ss_pred cCC
Q 041509 118 DCN 120 (211)
Q Consensus 118 D~~ 120 (211)
+.+
T Consensus 76 SPP 78 (163)
T PF09445_consen 76 SPP 78 (163)
T ss_dssp ---
T ss_pred CCC
Confidence 963
No 146
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.3e-09 Score=89.85 Aligned_cols=110 Identities=19% Similarity=0.157 Sum_probs=85.2
Q ss_pred HHHHHHHH-hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CC----------CCcEEE
Q 041509 29 AEFISALA-AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LD----------ASHVEF 96 (211)
Q Consensus 29 ~~lL~~l~-~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~----------~~~V~~ 96 (211)
+..+..|- ...++-..||+ |+|+||.|.+++.-+..+++..++||.-|+.++.+++|+. .. ..++.+
T Consensus 70 a~~le~L~~~L~pG~s~Ldv-GsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDV-GSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHhhccCcceeec-CCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 44455443 25677789999 9999999999997776656666999999999999999997 21 346899
Q ss_pred EEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 97 VIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 97 ~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
++||....-+. ..+||.|++.+... +..+.+...|+|||.++|
T Consensus 149 vvGDgr~g~~e-~a~YDaIhvGAaa~---~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 149 VVGDGRKGYAE-QAPYDAIHVGAAAS---ELPQELLDQLKPGGRLLI 191 (237)
T ss_pred EeCCccccCCc-cCCcceEEEccCcc---ccHHHHHHhhccCCeEEE
Confidence 99999987664 78999999998765 333444555567898887
No 147
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.03 E-value=2.3e-09 Score=87.08 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=72.7
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--h----hh
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--L----LS 107 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l----~~ 107 (211)
.+....+.++|||+ |||+|..+..++..... .++|+++|+++.+ . ..+++++.+|+.+. + ..
T Consensus 26 ~~~~i~~g~~VLDi-G~GtG~~~~~l~~~~~~-~~~v~~vDis~~~--------~--~~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 26 KFKLIKPGDTVLDL-GAAPGGWSQVAVEQVGG-KGRVIAVDLQPMK--------P--IENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred HhcccCCCCEEEEe-cCCCCHHHHHHHHHhCC-CceEEEEeccccc--------c--CCCceEEEeeCCChhHHHHHHHH
Confidence 34444678899999 99999999988877643 6799999999965 1 23578888887542 1 11
Q ss_pred c-cCCccEEEEcCCcC-------c-------HHHHHHHHHhcCCCCcEEEEE
Q 041509 108 H-FREADFVLIDCNLE-------N-------HEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 108 l-~~~fD~VfiD~~~~-------~-------y~~~l~~~~~~L~pgG~viv~ 144 (211)
. .++||+|+.|+... + ....++.+.+.|+|||.+++.
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 1 45799999986311 1 256888899999999988873
No 148
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.01 E-value=6.9e-09 Score=93.31 Aligned_cols=100 Identities=13% Similarity=0.060 Sum_probs=83.9
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEEcCC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
-+|||+ .||+|..++.++...+ ...+|+++|+||++++.+++|++ ....+++++++|+...+.....+||+|++|.
T Consensus 46 ~~vLD~-faGsG~rgir~a~e~~-ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 46 INIADA-LSASGIRAIRYAHEIE-GVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CEEEEC-CCchhHHHHHHHhhCC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 389999 6999999999987642 24689999999999999999998 4345799999999999876567899999999
Q ss_pred cCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 121 LENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 121 ~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
......+++.+.+.++++|.+.+.
T Consensus 123 fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCCcHHHHHHHHHhcccCCEEEEE
Confidence 444567899999989888877765
No 149
>PRK06202 hypothetical protein; Provisional
Probab=99.01 E-value=2.3e-09 Score=89.83 Aligned_cols=108 Identities=13% Similarity=0.047 Sum_probs=76.4
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccC--CCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQ--TGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~--~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~ 107 (211)
+++.......++.+|||+ |||+|..+..|+...+. .+.+|+++|+++++++.|+++... .++++..+++.+. +.
T Consensus 50 ~~~~~~l~~~~~~~iLDl-GcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~l-~~ 125 (232)
T PRK06202 50 RLLRPALSADRPLTLLDI-GCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--PGVTFRQAVSDEL-VA 125 (232)
T ss_pred HHHHHhcCCCCCcEEEEe-ccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--CCCeEEEEecccc-cc
Confidence 344444444567899999 99999999999876532 235999999999999999987652 2466666665443 22
Q ss_pred ccCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEE
Q 041509 108 HFREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 108 l~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv 143 (211)
.+++||+|+...... +..+.++++.+.++ |.+++
T Consensus 126 ~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 126 EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEE
Confidence 357999999875322 23568888888876 45555
No 150
>PRK05785 hypothetical protein; Provisional
Probab=99.01 E-value=4.6e-09 Score=88.22 Aligned_cols=87 Identities=14% Similarity=0.075 Sum_probs=71.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
++.+|||+ |||||..+..++... +++|+++|++++|++.|++. .+++++|+.+. +..+++||.|++..
T Consensus 51 ~~~~VLDl-GcGtG~~~~~l~~~~---~~~v~gvD~S~~Ml~~a~~~-------~~~~~~d~~~l-p~~d~sfD~v~~~~ 118 (226)
T PRK05785 51 RPKKVLDV-AAGKGELSYHFKKVF---KYYVVALDYAENMLKMNLVA-------DDKVVGSFEAL-PFRDKSFDVVMSSF 118 (226)
T ss_pred CCCeEEEE-cCCCCHHHHHHHHhc---CCEEEEECCCHHHHHHHHhc-------cceEEechhhC-CCCCCCEEEEEecC
Confidence 47899999 999999999998764 47999999999999999864 23578898765 53378999999875
Q ss_pred C---cCcHHHHHHHHHhcCCCC
Q 041509 120 N---LENHEGVLRAVQAGNKPN 138 (211)
Q Consensus 120 ~---~~~y~~~l~~~~~~L~pg 138 (211)
. ..+..+.++++.+.|+|.
T Consensus 119 ~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 119 ALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hhhccCCHHHHHHHHHHHhcCc
Confidence 3 346688999999999983
No 151
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.00 E-value=1.4e-09 Score=93.43 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=78.1
Q ss_pred CCCeEEEEccccHHHH----HHHHHHHccC---CCcEEEEEeCChhHHHHHHHHhc------C-----------------
Q 041509 40 NAQLMVVACANVANAT----TLALAAAAHQ---TGGRVVCILRRVEEYKLSKKILG------L----------------- 89 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~s----tl~la~a~~~---~~g~v~tiE~~~~~~~~Ar~~~~------~----------------- 89 (211)
++.+|+++ |||+|.- ++.+++..+. .+.+|+++|+|+++++.|++..- +
T Consensus 99 ~~~ri~d~-GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 99 RRVRIWSA-GCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCEEEEec-cccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 45689999 9999963 4455555432 25799999999999999998641 0
Q ss_pred -----CCCcEEEEEcchHHHhhhccCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 90 -----DASHVEFVIGDAQSLLLSHFREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 90 -----~~~~V~~~~gda~e~l~~l~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
..++|+|..+|..+..+ ..++||+|+.-. +.+...+.++.+.+.|+|||.+++.+.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP-PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC-ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 12479999999987533 267999999742 223446799999999999999888663
No 152
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.99 E-value=1.8e-09 Score=88.98 Aligned_cols=129 Identities=18% Similarity=0.208 Sum_probs=91.9
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEE-EEEcchHHHhhhc-cCCccEEEEc-
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVE-FVIGDAQSLLLSH-FREADFVLID- 118 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~-~~~gda~e~l~~l-~~~fD~VfiD- 118 (211)
.|||+ |||||..=-+.-- .++-+||++|.+|.|.+.|.+.++ ....+++ |+++++.++ +++ ++++|.|+-.
T Consensus 79 ~vLEv-gcGtG~Nfkfy~~---~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 79 DVLEV-GCGTGANFKFYPW---KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-PQLADGSYDTVVCTL 153 (252)
T ss_pred ceEEe-cccCCCCcccccC---CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-cccccCCeeeEEEEE
Confidence 48999 9999964222211 147899999999999999999998 4445566 999999877 444 7899999754
Q ss_pred --CCcCcHHHHHHHHHhcCCCCcEEEEEecCCCC-Ccee---cCCCcEEEeecCCcEEEEEEec
Q 041509 119 --CNLENHEGVLRAVQAGNKPNGAVVVGYNAFRK-GSWR---SSGSKSQLLPIGEGLLVTRIAA 176 (211)
Q Consensus 119 --~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~-~~~~---~~~~~~v~lpig~Gl~v~~~~~ 176 (211)
+..++..+.++++.++|||||+++..+.+--+ +.|. +..++...=-+.||....|-..
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~ 217 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTG 217 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHH
Confidence 56778889999999999999998887654322 2232 3334443334566766665544
No 153
>PLN02672 methionine S-methyltransferase
Probab=98.98 E-value=8.5e-09 Score=102.75 Aligned_cols=76 Identities=14% Similarity=-0.043 Sum_probs=62.9
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC---------------CCcEEEEEcchHH
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD---------------ASHVEFVIGDAQS 103 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~---------------~~~V~~~~gda~e 103 (211)
+++|||+ |||+|..++.++...+ .++|+++|+++++++.|++|++ ++ .++|+|+++|..+
T Consensus 119 ~~~VLDl-G~GSG~Iai~La~~~~--~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~ 195 (1082)
T PLN02672 119 DKTVAEL-GCGNGWISIAIAEKWL--PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG 195 (1082)
T ss_pred CCEEEEE-ecchHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh
Confidence 4689999 8999999999998764 4799999999999999999997 22 2579999999988
Q ss_pred HhhhccCCccEEEEcC
Q 041509 104 LLLSHFREADFVLIDC 119 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~ 119 (211)
.+.....+||+|+.+.
T Consensus 196 ~~~~~~~~fDlIVSNP 211 (1082)
T PLN02672 196 YCRDNNIELDRIVGCI 211 (1082)
T ss_pred hccccCCceEEEEECC
Confidence 7643234799999763
No 154
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.96 E-value=6.5e-09 Score=88.92 Aligned_cols=124 Identities=16% Similarity=0.098 Sum_probs=93.1
Q ss_pred CCChhHHHHHHHHHh------hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcE
Q 041509 23 AKEPNEAEFISALAA------GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHV 94 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~------~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V 94 (211)
+..|++-+++..... ..++..+||+ |||+|..++.++..++ .++|++||.++.++.+|.+|.+ .+.+++
T Consensus 125 IPRpETEE~V~~Vid~~~~~~~~~~~~ildl-gtGSGaIslsll~~L~--~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 125 IPRPETEEWVEAVIDALNNSEHSKHTHILDL-GTGSGAISLSLLHGLP--QCTVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred ecCccHHHHHHHHHHHHhhhhhcccceEEEe-cCCccHHHHHHHhcCC--CceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence 355777776655433 2355679999 8999999999999996 6999999999999999999998 678889
Q ss_pred EEE----EcchHHHhhhccCCccEEEEcCC--------------------------cC---cHHHHHHHHHhcCCCCcEE
Q 041509 95 EFV----IGDAQSLLLSHFREADFVLIDCN--------------------------LE---NHEGVLRAVQAGNKPNGAV 141 (211)
Q Consensus 95 ~~~----~gda~e~l~~l~~~fD~VfiD~~--------------------------~~---~y~~~l~~~~~~L~pgG~v 141 (211)
.++ .+|..+..+.+.+++|+++.+.+ -+ .+-.++..+.++|+|||.+
T Consensus 202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred EEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 888 55666555545789999986531 11 2466777888899998876
Q ss_pred EEEecCCC
Q 041509 142 VVGYNAFR 149 (211)
Q Consensus 142 iv~dn~~~ 149 (211)
..--+...
T Consensus 282 ~le~~~~~ 289 (328)
T KOG2904|consen 282 QLELVERK 289 (328)
T ss_pred EEEecccc
Confidence 65444333
No 155
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.96 E-value=1.8e-08 Score=87.98 Aligned_cols=94 Identities=22% Similarity=0.137 Sum_probs=77.1
Q ss_pred cCCcC-CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEE
Q 041509 19 MGQKA-KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVE 95 (211)
Q Consensus 19 ~~~~~-~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~ 95 (211)
.+|.. +++...+.+...+...+.+.|||| |||+|..|..++.. +.+|+++|+|+.+++.+++++. +..++++
T Consensus 14 ~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEI-G~G~G~LT~~Ll~~----~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ 88 (294)
T PTZ00338 14 FGQHILKNPLVLDKIVEKAAIKPTDTVLEI-GPGTGNLTEKLLQL----AKKVIAIEIDPRMVAELKKRFQNSPLASKLE 88 (294)
T ss_pred CCccccCCHHHHHHHHHhcCCCCcCEEEEe-cCchHHHHHHHHHh----CCcEEEEECCHHHHHHHHHHHHhcCCCCcEE
Confidence 35554 677787777777777788899999 99999999999875 4689999999999999999987 4457899
Q ss_pred EEEcchHHHhhhccCCccEEEEcCC
Q 041509 96 FVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 96 ~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
++++|+.+.. ...||.|+.+.+
T Consensus 89 ii~~Dal~~~---~~~~d~VvaNlP 110 (294)
T PTZ00338 89 VIEGDALKTE---FPYFDVCVANVP 110 (294)
T ss_pred EEECCHhhhc---ccccCEEEecCC
Confidence 9999998752 357899987654
No 156
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.94 E-value=3.3e-09 Score=87.67 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=70.3
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..+.+.|+|+ .||+|+.++.+|... .+.+|+++|.||++.+..++|++ ++.++|+.+++|+.++++ .+.+|.|
T Consensus 99 v~~~e~VlD~-faGIG~f~l~~ak~~--~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDM-FAGIGPFSLPIAKHG--KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--EGKFDRV 173 (200)
T ss_dssp --TT-EEEET-T-TTTTTHHHHHHHT---SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEE
T ss_pred CCcceEEEEc-cCCccHHHHHHhhhc--CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--ccccCEE
Confidence 4567899999 699999999999743 26789999999999999999999 667889999999999977 6899999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCc
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNG 139 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG 139 (211)
+++.+.... ++++.+..+++++|
T Consensus 174 im~lp~~~~-~fl~~~~~~~~~~g 196 (200)
T PF02475_consen 174 IMNLPESSL-EFLDAALSLLKEGG 196 (200)
T ss_dssp EE--TSSGG-GGHHHHHHHEEEEE
T ss_pred EECChHHHH-HHHHHHHHHhcCCc
Confidence 999876533 57777788787654
No 157
>PHA03412 putative methyltransferase; Provisional
Probab=98.93 E-value=2.5e-08 Score=84.28 Aligned_cols=117 Identities=13% Similarity=0.087 Sum_probs=83.9
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccC-CCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQ-TGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA 101 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~-~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda 101 (211)
.-++..++.+... .....+|||+ |||+|..++.+++.+.. ...+|++||+|+.+++.|++|+. ++.++++|+
T Consensus 34 fTP~~iAr~~~i~--~~~~grVLDl-G~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----~~~~~~~D~ 106 (241)
T PHA03412 34 FTPIGLARDFTID--ACTSGSVVDL-CAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----EATWINADA 106 (241)
T ss_pred CCCHHHHHHHHHh--ccCCCEEEEc-cChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----CCEEEEcch
Confidence 4444556654322 2346799999 89999999999876431 25799999999999999998854 488999999
Q ss_pred HHHhhhccCCccEEEEcCCcC---------------cHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 102 QSLLLSHFREADFVLIDCNLE---------------NHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~~~~---------------~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.+.. +.++||+|+.+.+-. ....+++.+.+++++ |.+|+-.+.+.
T Consensus 107 ~~~~--~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~-G~~ILP~~~~~ 166 (241)
T PHA03412 107 LTTE--FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQ-GTFIIPQMSAN 166 (241)
T ss_pred hccc--ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCC-CEEEeCccccc
Confidence 7642 356899999885321 135577788886665 66766566553
No 158
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.92 E-value=9.8e-09 Score=84.51 Aligned_cols=101 Identities=18% Similarity=0.138 Sum_probs=81.4
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc--cCCccEEEEcC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH--FREADFVLIDC 119 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l--~~~fD~VfiD~ 119 (211)
.+||| |||.|.+.+.+|..-| +..+++||+....+..|.+.+. ....++.++.+||...+..+ .+++|-|++..
T Consensus 20 l~lEI-G~G~G~~l~~~A~~~P--d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 20 LILEI-GCGKGEFLIELAKRNP--DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEE-T-TTSHHHHHHHHHST--TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred eEEEe-cCCCCHHHHHHHHHCC--CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 78999 9999999999998864 7899999999999999988887 33589999999999988765 47999999964
Q ss_pred CcC-----------cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 120 NLE-----------NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 120 ~~~-----------~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+-+ -..+.++.+.+.|+|||.+.+..|
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 211 137899999999999998877665
No 159
>PHA03411 putative methyltransferase; Provisional
Probab=98.91 E-value=1.7e-08 Score=86.99 Aligned_cols=100 Identities=13% Similarity=0.174 Sum_probs=76.1
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.....+|||+ |||+|..++.++...+ +.+|+++|+++++++.|++++ .+++++++|+.+... ..+||+|+.
T Consensus 62 ~~~~grVLDL-GcGsGilsl~la~r~~--~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~~~--~~kFDlIIs 132 (279)
T PHA03411 62 AHCTGKVLDL-CAGIGRLSFCMLHRCK--PEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEFES--NEKFDVVIS 132 (279)
T ss_pred cccCCeEEEc-CCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhhcc--cCCCcEEEE
Confidence 3445789999 8999999888876542 469999999999999999874 368899999998753 468999999
Q ss_pred cCCcC-----------cH------------HHHHHHHHhcCCCCcEEEEEec
Q 041509 118 DCNLE-----------NH------------EGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 118 D~~~~-----------~y------------~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.+.. .| .+.+.....+|+|+|.++++..
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS 184 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEe
Confidence 86431 11 2344555667899998777643
No 160
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.89 E-value=2.3e-08 Score=88.59 Aligned_cols=116 Identities=14% Similarity=0.092 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHH
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQS 103 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e 103 (211)
....+-...+-....+..|||.+ +|.|+.|+.+|...+ .+|+++|+||.+.+..++|++ +..++|+.++||+.+
T Consensus 174 rl~~ER~Rva~~v~~GE~V~DmF-AGVGpfsi~~Ak~g~---~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~re 249 (341)
T COG2520 174 RLSTERARVAELVKEGETVLDMF-AGVGPFSIPIAKKGR---PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDARE 249 (341)
T ss_pred CchHHHHHHHhhhcCCCEEEEcc-CCcccchhhhhhcCC---ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHH
Confidence 33444443333345589999995 999999999998753 349999999999999999999 556779999999999
Q ss_pred HhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 104 LLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+.+.+ +.+|.|++...+.. .+++..+...+++||.+-. +...
T Consensus 250 v~~~~-~~aDrIim~~p~~a-~~fl~~A~~~~k~~g~iHy-y~~~ 291 (341)
T COG2520 250 VAPEL-GVADRIIMGLPKSA-HEFLPLALELLKDGGIIHY-YEFV 291 (341)
T ss_pred hhhcc-ccCCEEEeCCCCcc-hhhHHHHHHHhhcCcEEEE-Eecc
Confidence 98853 89999999887642 3467777777888665544 4433
No 161
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.88 E-value=1.4e-08 Score=83.34 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=78.9
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
..|...+.+.+ +...++.++||+ |||.|--+++||+. |-.|+++|.++..++.+++..+...-.|+..+.|..+
T Consensus 15 ~~~~hs~v~~a-~~~~~~g~~LDl-gcG~GRNalyLA~~----G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~ 88 (192)
T PF03848_consen 15 LTPTHSEVLEA-VPLLKPGKALDL-GCGEGRNALYLASQ----GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLND 88 (192)
T ss_dssp B----HHHHHH-CTTS-SSEEEEE-S-TTSHHHHHHHHT----T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCC
T ss_pred CCCCcHHHHHH-HhhcCCCcEEEc-CCCCcHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchh
Confidence 33444454443 466788999999 99999999999974 7799999999999998887665112239999999876
Q ss_pred HhhhccCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 104 LLLSHFREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.. +.+.||+|+... ..+.....++.+...++|||.+++
T Consensus 89 ~~--~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 89 FD--FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp BS---TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred cc--ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 53 357899998642 344567889999999999887665
No 162
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.85 E-value=2.1e-08 Score=85.75 Aligned_cols=93 Identities=19% Similarity=0.127 Sum_probs=76.2
Q ss_pred cCCc-CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE
Q 041509 19 MGQK-AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV 97 (211)
Q Consensus 19 ~~~~-~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~ 97 (211)
.+|. .+++...+.+...+...+.++|||| |||+|..|..+++. +.+|++||+|+.+++.+++++.. .++++++
T Consensus 7 ~GQnfl~d~~~~~~iv~~~~~~~~~~VLEI-G~G~G~lt~~L~~~----~~~v~~vEid~~~~~~l~~~~~~-~~~v~ii 80 (258)
T PRK14896 7 LGQHFLIDDRVVDRIVEYAEDTDGDPVLEI-GPGKGALTDELAKR----AKKVYAIELDPRLAEFLRDDEIA-AGNVEII 80 (258)
T ss_pred CCccccCCHHHHHHHHHhcCCCCcCeEEEE-eCccCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHhcc-CCCEEEE
Confidence 3554 4678888888877777788999999 99999999999875 46899999999999999998874 4689999
Q ss_pred EcchHHHhhhccCCccEEEEcCC
Q 041509 98 IGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
++|+.+.- ...||.|+.+.+
T Consensus 81 ~~D~~~~~---~~~~d~Vv~NlP 100 (258)
T PRK14896 81 EGDALKVD---LPEFNKVVSNLP 100 (258)
T ss_pred EeccccCC---chhceEEEEcCC
Confidence 99998752 245899986644
No 163
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.83 E-value=1.1e-07 Score=77.15 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=85.3
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCC-------cEEEEEeCChhHHHHHHHHhc--CCCC
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTG-------GRVVCILRRVEEYKLSKKILG--LDAS 92 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~-------g~v~tiE~~~~~~~~Ar~~~~--~~~~ 92 (211)
..+.|..+..|..++...+...|||-+ ||+|..-+..+....... .+++++|+++++++.|++|++ +...
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~-CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~ 88 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPF-CGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED 88 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT--TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecC-CCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC
Confidence 457788898899998888888999995 999988777655543211 149999999999999999998 7778
Q ss_pred cEEEEEcchHHHhhhccCCccEEEEcCCcC-----------cHHHHHHHHHhcCCCCcEEEE
Q 041509 93 HVEFVIGDAQSLLLSHFREADFVLIDCNLE-----------NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 93 ~V~~~~gda~e~l~~l~~~fD~VfiD~~~~-----------~y~~~l~~~~~~L~pgG~viv 143 (211)
.|.+..+|+.++- ...+.+|.|+.|.+-. -|.+.++.+.+.+++ ..+++
T Consensus 89 ~i~~~~~D~~~l~-~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l 148 (179)
T PF01170_consen 89 YIDFIQWDARELP-LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFL 148 (179)
T ss_dssp GEEEEE--GGGGG-GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEE
T ss_pred ceEEEecchhhcc-cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEE
Confidence 8999999999874 2367999999997432 467888888888987 44444
No 164
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=98.83 E-value=2.1e-08 Score=83.02 Aligned_cols=121 Identities=13% Similarity=0.112 Sum_probs=72.6
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHcc--CCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAH--QTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~--~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda 101 (211)
..|...-.+..+.-..+|+.|+|+ |+.-|-|++|+|.-+. ...++|++||++..........-..+.++|+++.||+
T Consensus 16 q~P~Dm~~~qeli~~~kPd~IIE~-Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds 94 (206)
T PF04989_consen 16 QYPQDMVAYQELIWELKPDLIIET-GIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDS 94 (206)
T ss_dssp S-HHHHHHHHHHHHHH--SEEEEE---TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-S
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEE-ecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCC
Confidence 446666667777788899999999 9999999999876442 1369999999986554433222225578999999997
Q ss_pred HH--Hhhhc-----cCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 102 QS--LLLSH-----FREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 102 ~e--~l~~l-----~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+ .+... .....+|+.|+++. +..+.++...+++.+|+-+||.|
T Consensus 95 ~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 95 IDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 54 33222 24567999999854 67888888999999977666654
No 165
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.81 E-value=6.6e-08 Score=77.97 Aligned_cols=106 Identities=19% Similarity=0.097 Sum_probs=71.3
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C---CCCcEEEEEcchHHHh--hhc-c
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L---DASHVEFVIGDAQSLL--LSH-F 109 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~---~~~~V~~~~gda~e~l--~~l-~ 109 (211)
...++++|||+ |||+|..++.++... ...+|+..|.++ .++..+.|++ . ...++++..-|-.+-. ..+ .
T Consensus 42 ~~~~~~~VLEL-GaG~Gl~gi~~a~~~--~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 42 ELFRGKRVLEL-GAGTGLPGIAAAKLF--GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp GGTTTSEEEET-T-TTSHHHHHHHHT---T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-
T ss_pred hhcCCceEEEE-CCccchhHHHHHhcc--CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccccc
Confidence 45678999999 999999999998763 267999999999 9999999998 2 3567777765532211 112 4
Q ss_pred CCccEEEEc-C--CcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 110 READFVLID-C--NLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 110 ~~fD~VfiD-~--~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
++||+|+.. . +.+.+...++.+..+|+|+|.++++..
T Consensus 118 ~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 118 HSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred ccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 589999853 2 455788899999999999999888764
No 166
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.81 E-value=2.3e-08 Score=89.29 Aligned_cols=98 Identities=19% Similarity=0.145 Sum_probs=68.6
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc------------
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH------------ 108 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l------------ 108 (211)
..|||+ .||+|..|+.||.. ..+|++||.++++++.|++|++ ...++++|+.+++.++...+
T Consensus 198 ~~vlDl-ycG~G~fsl~la~~----~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~ 272 (352)
T PF05958_consen 198 GDVLDL-YCGVGTFSLPLAKK----AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGI 272 (352)
T ss_dssp TEEEEE-S-TTTCCHHHHHCC----SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS
T ss_pred CcEEEE-eecCCHHHHHHHhh----CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhh
Confidence 479999 69999999999864 5799999999999999999999 55688999999988764321
Q ss_pred ---cCCccEEEEcCCcC-cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 109 ---FREADFVLIDCNLE-NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 109 ---~~~fD~VfiD~~~~-~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
...+|.|++|+++. .....++.+.+ + .-.++|..|.
T Consensus 273 ~~~~~~~d~vilDPPR~G~~~~~~~~~~~-~--~~ivYvSCnP 312 (352)
T PF05958_consen 273 DLKSFKFDAVILDPPRAGLDEKVIELIKK-L--KRIVYVSCNP 312 (352)
T ss_dssp -GGCTTESEEEE---TT-SCHHHHHHHHH-S--SEEEEEES-H
T ss_pred hhhhcCCCEEEEcCCCCCchHHHHHHHhc-C--CeEEEEECCH
Confidence 12689999999876 33556666654 3 4678887774
No 167
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.81 E-value=9.4e-08 Score=80.49 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=84.8
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc--cCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH--FREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l--~~~fD~Vfi 117 (211)
...+||| |||.|-+.+.+|..-| .--+++||+....+..|.+.+. ....++.++++||.+++..+ +++.|-|++
T Consensus 49 ~pi~lEI-GfG~G~~l~~~A~~nP--~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 49 APIVLEI-GFGMGEFLVEMAKKNP--EKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred CcEEEEE-CCCCCHHHHHHHHHCC--CCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 3579999 9999999999998875 5689999999999999888887 22349999999999999876 348999988
Q ss_pred cC---Cc------C--cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 118 DC---NL------E--NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 118 D~---~~------~--~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.. +. + -+...++.+.+.|+|||.+.+..|
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 53 22 1 258899999999999998877654
No 168
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.79 E-value=6.9e-08 Score=85.04 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=68.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C-C----CCcEEEEEcchHHHhhhccCCcc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L-D----ASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~-~----~~~V~~~~gda~e~l~~l~~~fD 113 (211)
++.+|||+ |||+|..++.++.. +.+|+++|++++|++.|+++.+ . . ..+++|..+|..+. .++||
T Consensus 144 ~~~~VLDl-GcGtG~~a~~la~~----g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD 214 (315)
T PLN02585 144 AGVTVCDA-GCGTGSLAIPLALE----GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYD 214 (315)
T ss_pred CCCEEEEe-cCCCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcC
Confidence 56799999 99999999999863 5799999999999999999986 2 1 24689999997543 57899
Q ss_pred EEEEcCCc-----CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 114 FVLIDCNL-----ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 114 ~VfiD~~~-----~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|++-... ......++.+.. +.+ |.+++..
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~-g~liIs~ 249 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLAS-LAE-KRLIISF 249 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHHh-hcC-CEEEEEe
Confidence 99854221 123345555554 445 4555533
No 169
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.79 E-value=1.1e-07 Score=81.03 Aligned_cols=104 Identities=18% Similarity=0.131 Sum_probs=76.3
Q ss_pred CCc-CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE
Q 041509 20 GQK-AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI 98 (211)
Q Consensus 20 ~~~-~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~ 98 (211)
++. .+.+...+.+...+...++++|||+ |||+|..|..|+... .+|+++|.|+.+++.+++++.. ..++++++
T Consensus 8 gq~fl~d~~i~~~i~~~~~~~~~~~VLEi-G~G~G~lt~~L~~~~----~~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~ 81 (253)
T TIGR00755 8 GQNFLIDESVIQKIVEAANVLEGDVVLEI-GPGLGALTEPLLKRA----KKVTAIEIDPRLAEILRKLLSL-YERLEVIE 81 (253)
T ss_pred CCccCCCHHHHHHHHHhcCCCCcCEEEEe-CCCCCHHHHHHHHhC----CcEEEEECCHHHHHHHHHHhCc-CCcEEEEE
Confidence 453 4667777766666666778899999 999999999999764 4699999999999999988763 46799999
Q ss_pred cchHHHhhhccCCcc---EEEEcCCcCcHHHHHHHHH
Q 041509 99 GDAQSLLLSHFREAD---FVLIDCNLENHEGVLRAVQ 132 (211)
Q Consensus 99 gda~e~l~~l~~~fD---~VfiD~~~~~y~~~l~~~~ 132 (211)
+|+.+... ..+| .|+.+.+...-...+..+.
T Consensus 82 ~D~~~~~~---~~~d~~~~vvsNlPy~i~~~il~~ll 115 (253)
T TIGR00755 82 GDALKVDL---PDFPKQLKVVSNLPYNISSPLIFKLL 115 (253)
T ss_pred CchhcCCh---hHcCCcceEEEcCChhhHHHHHHHHh
Confidence 99987532 2455 7775544332234444444
No 170
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.79 E-value=1.2e-07 Score=81.61 Aligned_cols=102 Identities=15% Similarity=0.046 Sum_probs=74.7
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
.+++...+.+...+...++++|||+ |||+|..|..|+... .+|+++|+|+++++.+++++.. ++++++++|+.
T Consensus 25 l~~~~i~~~i~~~l~~~~~~~VLEi-G~G~G~lt~~L~~~~----~~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~ 97 (272)
T PRK00274 25 LIDENILDKIVDAAGPQPGDNVLEI-GPGLGALTEPLLERA----AKVTAVEIDRDLAPILAETFAE--DNLTIIEGDAL 97 (272)
T ss_pred CCCHHHHHHHHHhcCCCCcCeEEEe-CCCccHHHHHHHHhC----CcEEEEECCHHHHHHHHHhhcc--CceEEEEChhh
Confidence 4667777766666666778899999 999999999998763 4899999999999999998763 68999999998
Q ss_pred HHhhhccCCccEEEEcCCcCcHHHHHHHHH
Q 041509 103 SLLLSHFREADFVLIDCNLENHEGVLRAVQ 132 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~ 132 (211)
+.-.. .-.+|.|+.+.+-..-...+..+.
T Consensus 98 ~~~~~-~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 98 KVDLS-ELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred cCCHH-HcCcceEEEeCCccchHHHHHHHH
Confidence 76221 111477775544222234444444
No 171
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.9e-07 Score=75.71 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=79.4
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
..+++.++|| |||+|+.+.+|++...+ +....++|+||++++..++..+....+++.+..|....+.. ++.|+++.
T Consensus 41 ~~~~~i~lEI-G~GSGvvstfL~~~i~~-~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~--~~VDvLvf 116 (209)
T KOG3191|consen 41 GHNPEICLEI-GCGSGVVSTFLASVIGP-QALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRN--ESVDVLVF 116 (209)
T ss_pred hcCceeEEEe-cCCcchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhcc--CCccEEEE
Confidence 3458899999 99999999999999864 78899999999999998888774456699999999988874 89999987
Q ss_pred cCCc------C--------------c----HHHHHHHHHhcCCCCcEEEE
Q 041509 118 DCNL------E--------------N----HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 118 D~~~------~--------------~----y~~~l~~~~~~L~pgG~viv 143 (211)
+.+- + + ....+.++..+|.|.|.+++
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 6421 0 0 13445555566778887765
No 172
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.75 E-value=4.2e-08 Score=82.13 Aligned_cols=112 Identities=20% Similarity=0.150 Sum_probs=83.1
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHH--Hhc-------C----
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKK--ILG-------L---- 89 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~--~~~-------~---- 89 (211)
.+.|..-+++..+ ...++.+||.. |||.|+-.+|||.. +-+|+++|+++.+++.|.+ +.. .
T Consensus 21 ~~~p~L~~~~~~l-~~~~~~rvLvP-gCG~g~D~~~La~~----G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~ 94 (218)
T PF05724_consen 21 EPNPALVEYLDSL-ALKPGGRVLVP-GCGKGYDMLWLAEQ----GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRY 94 (218)
T ss_dssp TSTHHHHHHHHHH-TTSTSEEEEET-TTTTSCHHHHHHHT----TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEE
T ss_pred CCCHHHHHHHHhc-CCCCCCeEEEe-CCCChHHHHHHHHC----CCeEEEEecCHHHHHHHHHHhccCCCcccccceeee
Confidence 4566666666663 45566789999 99999999999963 6799999999999999832 221 0
Q ss_pred CCCcEEEEEcchHHHhhhccCCccEEEEc-----CCcCcHHHHHHHHHhcCCCCcE
Q 041509 90 DASHVEFVIGDAQSLLLSHFREADFVLID-----CNLENHEGVLRAVQAGNKPNGA 140 (211)
Q Consensus 90 ~~~~V~~~~gda~e~l~~l~~~fD~VfiD-----~~~~~y~~~l~~~~~~L~pgG~ 140 (211)
..++|++++||..+.-+...++||+|+=- -+.+.-.+|.+.+.++|+|||.
T Consensus 95 ~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 95 QAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp TTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred cCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 13578999999998755445689999722 2345678999999999999988
No 173
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.75 E-value=7.9e-08 Score=83.89 Aligned_cols=89 Identities=20% Similarity=0.192 Sum_probs=73.3
Q ss_pred HHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhcc
Q 041509 30 EFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHF 109 (211)
Q Consensus 30 ~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~ 109 (211)
+.|..+ ...++..+||. +||.|.-|..+++.+++ .++|+++|.||++++.|++.+.. .++++++++|..++...+.
T Consensus 10 Evl~~L-~~~pg~~vlD~-TlG~GGhS~~il~~~~~-~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 10 EVVDAL-AIKPDGIYVDG-TFGGGGHSRAILERLGP-KGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHhh-CCCCCCEEEEe-CcCChHHHHHHHHhCCC-CCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHHH
Confidence 344444 34566789999 89999999999998853 69999999999999999998875 5789999999998865443
Q ss_pred C---CccEEEEcCCcC
Q 041509 110 R---EADFVLIDCNLE 122 (211)
Q Consensus 110 ~---~fD~VfiD~~~~ 122 (211)
. ++|.|++|....
T Consensus 86 ~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 86 EGLGKVDGILLDLGVS 101 (296)
T ss_pred cCCCccCEEEECCCcc
Confidence 3 799999997655
No 174
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.9e-07 Score=83.46 Aligned_cols=127 Identities=18% Similarity=0.149 Sum_probs=100.6
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcc
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGD 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gd 100 (211)
.++.....+...++...++.+|||+| .+.|-=|..||+.+...++.|+++|.++..+...++|++ |. .++.+++.|
T Consensus 139 ~vQd~sS~l~a~~L~p~pge~VlD~c-AAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-~nv~~~~~d 216 (355)
T COG0144 139 YVQDEASQLPALVLDPKPGERVLDLC-AAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-RNVIVVNKD 216 (355)
T ss_pred EEcCHHHHHHHHHcCCCCcCEEEEEC-CCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-CceEEEecc
Confidence 46666777777788888999999997 999999999999987656677999999999999999999 54 458888888
Q ss_pred hHHHhhhc--cCCccEEEEcCCc----------C---------------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 101 AQSLLLSH--FREADFVLIDCNL----------E---------------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 101 a~e~l~~l--~~~fD~VfiD~~~----------~---------------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+....... .++||.|++|++= . ...+.++.+.++|+|||.++.+.+.+.+.
T Consensus 217 ~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 217 ARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred cccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 86553322 2369999999621 0 12678888899999999988877777653
No 175
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.72 E-value=1.7e-07 Score=81.67 Aligned_cols=114 Identities=11% Similarity=0.040 Sum_probs=80.1
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhh
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLL 106 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~ 106 (211)
.++.-.+ ...+.++|||| ||+.||.+..++.+- ...|++||.++......+---+ +. +...+......+-++
T Consensus 105 ~rl~p~l-~~L~gk~VLDI-GC~nGY~~frM~~~G---A~~ViGiDP~~lf~~QF~~i~~~lg~-~~~~~~lplgvE~Lp 178 (315)
T PF08003_consen 105 DRLLPHL-PDLKGKRVLDI-GCNNGYYSFRMLGRG---AKSVIGIDPSPLFYLQFEAIKHFLGQ-DPPVFELPLGVEDLP 178 (315)
T ss_pred HHHHhhh-CCcCCCEEEEe-cCCCcHHHHHHhhcC---CCEEEEECCChHHHHHHHHHHHHhCC-CccEEEcCcchhhcc
Confidence 3444444 45688999999 999999988887652 4689999999987665432212 32 333344455666667
Q ss_pred hccCCccEEEEcC---CcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 107 SHFREADFVLIDC---NLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 107 ~l~~~fD~VfiD~---~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
. .+.||.||.=+ ..++..+.++++...|+|||-+++ +...-+
T Consensus 179 ~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvL-ETlvi~ 223 (315)
T PF08003_consen 179 N-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVL-ETLVID 223 (315)
T ss_pred c-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEE-EEeeec
Confidence 6 68999999776 334668899999999999887765 554433
No 176
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.69 E-value=8.7e-08 Score=78.20 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=65.8
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLID 118 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD 118 (211)
+..+|||+ |||+|..+..++... +..+++||.++++++.|++ .+++++.+|+.+.++.. .++||+|++.
T Consensus 13 ~~~~iLDi-GcG~G~~~~~l~~~~---~~~~~giD~s~~~i~~a~~------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 13 PGSRVLDL-GCGDGELLALLRDEK---QVRGYGIEIDQDGVLACVA------RGVNVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred CCCEEEEe-CCCCCHHHHHHHhcc---CCcEEEEeCCHHHHHHHHH------cCCeEEEEEhhhcccccCCCCcCEEEEh
Confidence 56789999 999999988887653 4578999999999988864 24788999997744322 5689999987
Q ss_pred CCc---CcHHHHHHHHHhcCC
Q 041509 119 CNL---ENHEGVLRAVQAGNK 136 (211)
Q Consensus 119 ~~~---~~y~~~l~~~~~~L~ 136 (211)
... .+....++++.+.++
T Consensus 83 ~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 83 QTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred hHhHcCcCHHHHHHHHHHhCC
Confidence 542 345667777776554
No 177
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.67 E-value=2.2e-07 Score=78.23 Aligned_cols=115 Identities=10% Similarity=0.015 Sum_probs=82.5
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-------------CC
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-------------LD 90 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-------------~~ 90 (211)
+.|...+.+..+. ..++.+||.. |||.|+-++|||.. +-+|+++|+++.+++.+.+... ..
T Consensus 28 pnp~L~~~~~~l~-~~~~~rvLvP-gCGkg~D~~~LA~~----G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 101 (226)
T PRK13256 28 PNEFLVKHFSKLN-INDSSVCLIP-MCGCSIDMLFFLSK----GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK 101 (226)
T ss_pred CCHHHHHHHHhcC-CCCCCeEEEe-CCCChHHHHHHHhC----CCcEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence 3344344444332 2245799999 99999999999963 6789999999999999866321 11
Q ss_pred CCcEEEEEcchHHHhh--hccCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 91 ASHVEFVIGDAQSLLL--SHFREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 91 ~~~V~~~~gda~e~l~--~l~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
..+|++++||..+.-+ ...++||+|+--+ +.+.-.+|.+.+.++|+|||.+++.
T Consensus 102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 102 GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred cCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3579999999988632 2246899976432 3345688999999999998886554
No 178
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=7.2e-08 Score=88.56 Aligned_cols=117 Identities=23% Similarity=0.264 Sum_probs=90.1
Q ss_pred HHHHHHHH----HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchH
Q 041509 28 EAEFISAL----AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQ 102 (211)
Q Consensus 28 ~~~lL~~l----~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~ 102 (211)
.++.|+.. +.....+.+||+| ||||.+++.+|+. .++|++||++|+.++.|++|.. +..++.+|++|.|+
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~-CGTG~iglala~~----~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVC-CGTGTIGLALARG----VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEe-ecCCceehhhhcc----ccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 34555544 3344556789996 9999999988865 4799999999999999999998 55789999999999
Q ss_pred HHhhhccC----Ccc-EEEEcCCcC-cHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 103 SLLLSHFR----EAD-FVLIDCNLE-NHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 103 e~l~~l~~----~fD-~VfiD~~~~-~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+.++.+.. .-+ ++++|.++. -....++.+...-++.-.+++..|...
T Consensus 442 ~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 442 DLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHT 494 (534)
T ss_pred hccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHH
Confidence 99887733 446 778898765 456667777766556677888888653
No 179
>PRK00536 speE spermidine synthase; Provisional
Probab=98.67 E-value=3.5e-07 Score=78.55 Aligned_cols=97 Identities=7% Similarity=0.036 Sum_probs=73.0
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC-CCcEEEEEcchHHHhhhccC
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD-ASHVEFVIGDAQSLLLSHFR 110 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~-~~~V~~~~gda~e~l~~l~~ 110 (211)
+...+|++||=| |.|-|-.+-.+.+ . ..+|+-||+|++.++.+|+++. ++ ..|++++.. ......+
T Consensus 68 ~~h~~pk~VLIi-GGGDGg~~REvLk---h-~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~~~ 138 (262)
T PRK00536 68 CTKKELKEVLIV-DGFDLELAHQLFK---Y-DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLDIK 138 (262)
T ss_pred hhCCCCCeEEEE-cCCchHHHHHHHC---c-CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhccCC
Confidence 344689999999 9999976555554 3 3599999999999999999876 23 568999872 2221137
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+||+|++|.... .++++.+.+.|+|+|.++.
T Consensus 139 ~fDVIIvDs~~~--~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 139 KYDLIICLQEPD--IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred cCCEEEEcCCCC--hHHHHHHHHhcCCCcEEEE
Confidence 899999996432 5777889999999776554
No 180
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.65 E-value=1.1e-07 Score=79.96 Aligned_cols=102 Identities=25% Similarity=0.196 Sum_probs=81.0
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
...+.++|||| |.|.|..+..++++.| +-+++.+|. |+.++.+++ .++|+++.||..+.+| . +|+++
T Consensus 97 d~~~~~~vvDv-GGG~G~~~~~l~~~~P--~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~~~P---~-~D~~~ 163 (241)
T PF00891_consen 97 DFSGFKTVVDV-GGGSGHFAIALARAYP--NLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFDPLP---V-ADVYL 163 (241)
T ss_dssp TTTTSSEEEEE-T-TTSHHHHHHHHHST--TSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTTCCS---S-ESEEE
T ss_pred cccCccEEEec-cCcchHHHHHHHHHCC--CCcceeecc-Hhhhhcccc-----ccccccccccHHhhhc---c-cccee
Confidence 34566789999 9999999999999875 679999999 888888887 6899999999985544 3 99999
Q ss_pred EcCC-----cCcHHHHHHHHHhcCCCC--cEEEEEecCCCCC
Q 041509 117 IDCN-----LENHEGVLRAVQAGNKPN--GAVVVGYNAFRKG 151 (211)
Q Consensus 117 iD~~-----~~~y~~~l~~~~~~L~pg--G~viv~dn~~~~~ 151 (211)
+-.- .++-..+++.+.+.|+|| |.|+|.|.++...
T Consensus 164 l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 164 LRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp EESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred eehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 8543 334477899999999998 9999988877643
No 181
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.61 E-value=5.7e-07 Score=79.40 Aligned_cols=78 Identities=12% Similarity=0.021 Sum_probs=60.5
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C--CCCcEEEEE-cchHHHhhhc---cCCc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L--DASHVEFVI-GDAQSLLLSH---FREA 112 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~--~~~~V~~~~-gda~e~l~~l---~~~f 112 (211)
+..++||| |||+|.....|+...+ +.+++++|+|+.+++.|++|++ . +.++|+++. .+..++.... .+.|
T Consensus 114 ~~~~vLDI-GtGag~I~~lLa~~~~--~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDI-GVGANCIYPLIGVHEY--GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEe-cCCccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCce
Confidence 35789999 9999987777766543 6799999999999999999998 4 577899975 4554444321 4689
Q ss_pred cEEEEcCC
Q 041509 113 DFVLIDCN 120 (211)
Q Consensus 113 D~VfiD~~ 120 (211)
|+|+.+.+
T Consensus 191 DlivcNPP 198 (321)
T PRK11727 191 DATLCNPP 198 (321)
T ss_pred EEEEeCCC
Confidence 99998764
No 182
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.61 E-value=3.7e-07 Score=74.16 Aligned_cols=108 Identities=15% Similarity=0.075 Sum_probs=78.3
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++.+|||+ |||-|..-.-|+..- -.+.++++|.+++++++|+...+ ++.+.|+|...|..+- ....++||+|
T Consensus 65 ~~~A~~VlDL-GtGNG~~L~~L~~eg--f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlv 140 (227)
T KOG1271|consen 65 SKQADRVLDL-GTGNGHLLFQLAKEG--FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLV 140 (227)
T ss_pred cccccceeec-cCCchHHHHHHHHhc--CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEE
Confidence 3456699999 999998877777643 24679999999999999987666 6777899999998764 2234566666
Q ss_pred E---------EcCCc--CcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 116 L---------IDCNL--ENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 116 f---------iD~~~--~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
. +.++. ....-|+..+.++|+|+|.++|..+-+.
T Consensus 141 lDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 141 LDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred eecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 4 32222 2234577777888999999888664333
No 183
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.59 E-value=4.3e-07 Score=78.46 Aligned_cols=101 Identities=19% Similarity=0.265 Sum_probs=66.9
Q ss_pred CCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 40 NAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 40 ~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
.|++|+=| |+| .-.++++|+.... .+..|+++|+||++.+.|++-++ ++..+++|+++|+.+.... ...||.|
T Consensus 120 ~p~rVaFI-GSGPLPlT~i~la~~~~-~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-l~~~DvV 196 (276)
T PF03059_consen 120 PPSRVAFI-GSGPLPLTSIVLAKQHG-PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-LKEYDVV 196 (276)
T ss_dssp ---EEEEE----SS-HHHHHHH--HT-T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----SEE
T ss_pred ccceEEEE-cCCCcchHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-cccCCEE
Confidence 46799999 998 5677777886532 26789999999999999998877 5688999999999876433 4689999
Q ss_pred EEcCCcC----cHHHHHHHHHhcCCCCcEEEE
Q 041509 116 LIDCNLE----NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 116 fiD~~~~----~y~~~l~~~~~~L~pgG~viv 143 (211)
|+.+-.+ ...+.++.+.+.++||..+++
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 9998665 889999999999998554444
No 184
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.59 E-value=2.9e-07 Score=81.21 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=74.3
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc-cCCccE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH-FREADF 114 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l-~~~fD~ 114 (211)
..+.+.|||+ |||+|..+++.|+|. ..+|++||.+.- ++.|++.+. ++.+.|+++.|.+.++ .| .++.|.
T Consensus 58 lf~dK~VlDV-GcGtGILS~F~akAG---A~~V~aVe~S~i-a~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP~eKVDi 130 (346)
T KOG1499|consen 58 LFKDKTVLDV-GCGTGILSMFAAKAG---ARKVYAVEASSI-ADFARKIVKDNGLEDVITVIKGKVEDI--ELPVEKVDI 130 (346)
T ss_pred hcCCCEEEEc-CCCccHHHHHHHHhC---cceEEEEechHH-HHHHHHHHHhcCccceEEEeecceEEE--ecCccceeE
Confidence 4678999999 999999999999885 579999999864 589999988 6788899999999987 24 489999
Q ss_pred EEEcCCcC--cHHHHHHHH----HhcCCCCcEE
Q 041509 115 VLIDCNLE--NHEGVLRAV----QAGNKPNGAV 141 (211)
Q Consensus 115 VfiD~~~~--~y~~~l~~~----~~~L~pgG~v 141 (211)
|+....-. .|+..++.+ -+.|+|||.+
T Consensus 131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i 163 (346)
T KOG1499|consen 131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLI 163 (346)
T ss_pred EeehhhhHHHHHhhhhhhhhhhhhhccCCCceE
Confidence 98664321 234444433 3348887754
No 185
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.58 E-value=3.5e-07 Score=77.23 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=76.6
Q ss_pred HHHHHHh-hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCC-----------------
Q 041509 31 FISALAA-GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDAS----------------- 92 (211)
Q Consensus 31 lL~~l~~-~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~----------------- 92 (211)
.|..|-. -..++.+||| ||-+|..|+.+|.-.. ...|.++|+|+..++.|+++++...+
T Consensus 48 rLk~L~~~~f~~~~~LDI-GCNsG~lt~~iak~F~--~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~ 124 (288)
T KOG2899|consen 48 RLKVLEKDWFEPKQALDI-GCNSGFLTLSIAKDFG--PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQF 124 (288)
T ss_pred hhhhccccccCcceeEec-cCCcchhHHHHHHhhc--cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccc
Confidence 3444422 2468889999 9999999999999885 47899999999999999999871110
Q ss_pred -------------------cEEEEEcc----hHHHhhhccCCccEEEEcC---------CcCcHHHHHHHHHhcCCCCcE
Q 041509 93 -------------------HVEFVIGD----AQSLLLSHFREADFVLIDC---------NLENHEGVLRAVQAGNKPNGA 140 (211)
Q Consensus 93 -------------------~V~~~~gd----a~e~l~~l~~~fD~VfiD~---------~~~~y~~~l~~~~~~L~pgG~ 140 (211)
++.|..++ ..++|......||.|+.=. ..+....+++.+.++|.|||.
T Consensus 125 ~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGi 204 (288)
T KOG2899|consen 125 GPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGI 204 (288)
T ss_pred ccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcE
Confidence 12222111 2223322256899998532 222468899999999999887
Q ss_pred EEE
Q 041509 141 VVV 143 (211)
Q Consensus 141 viv 143 (211)
+++
T Consensus 205 Lvv 207 (288)
T KOG2899|consen 205 LVV 207 (288)
T ss_pred EEE
Confidence 766
No 186
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.58 E-value=1e-07 Score=80.24 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=79.7
Q ss_pred HHHHHHHHhhCCCC-eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CC-CCcEEEEEcchHHHh
Q 041509 29 AEFISALAAGNNAQ-LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LD-ASHVEFVIGDAQSLL 105 (211)
Q Consensus 29 ~~lL~~l~~~~~~~-~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~-~~~V~~~~gda~e~l 105 (211)
..++..++...+.. .++|+ |||+|..+.-+|+. --+|+++|++++|+++|++... .. ....++...+..+++
T Consensus 21 tdw~~~ia~~~~~h~~a~Dv-G~G~Gqa~~~iae~----~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~ 95 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDV-GTGNGQAARGIAEH----YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL 95 (261)
T ss_pred HHHHHHHHhhCCCcceEEEe-ccCCCcchHHHHHh----hhhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc
Confidence 56777777766655 68999 99999766667765 3589999999999999998876 11 223444444444443
Q ss_pred hhccCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEE
Q 041509 106 LSHFREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 106 ~~l~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.. +++.|+|..--... +.+++++.+.+.||+.|+++.+
T Consensus 96 g~-e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 96 GG-EESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred CC-CcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 32 67999998654433 5689999999999998866554
No 187
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.56 E-value=9.6e-07 Score=70.76 Aligned_cols=112 Identities=13% Similarity=0.019 Sum_probs=84.0
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~ 107 (211)
.++.+...+....+..|||+ |.|||..|-.+.+..-+ ...+++||.+++....-.+.+.+ +.+++||+.+.-..
T Consensus 36 lA~~M~s~I~pesglpVlEl-GPGTGV~TkaIL~~gv~-~~~L~~iE~~~dF~~~L~~~~p~----~~ii~gda~~l~~~ 109 (194)
T COG3963 36 LARKMASVIDPESGLPVLEL-GPGTGVITKAILSRGVR-PESLTAIEYSPDFVCHLNQLYPG----VNIINGDAFDLRTT 109 (194)
T ss_pred HHHHHHhccCcccCCeeEEE-cCCccHhHHHHHhcCCC-ccceEEEEeCHHHHHHHHHhCCC----ccccccchhhHHHH
Confidence 45555555555667789999 99999999997665433 68899999999999888877553 56999999876422
Q ss_pred c----cCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 108 H----FREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 108 l----~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+ +..||.|+..-+.- .-.++++.+...|.+||.++-..
T Consensus 110 l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 2 34789999765432 34778999999999988776543
No 188
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.55 E-value=3.3e-07 Score=72.85 Aligned_cols=75 Identities=16% Similarity=0.077 Sum_probs=60.8
Q ss_pred EEEeCChhHHHHHHHHhc----CCCCcEEEEEcchHHHhhhccCCccEEEEcCC---cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 71 VCILRRVEEYKLSKKILG----LDASHVEFVIGDAQSLLLSHFREADFVLIDCN---LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 71 ~tiE~~~~~~~~Ar~~~~----~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~---~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+++|++++|++.|+++.+ +...+|++++||+.+. +..+++||+|++... ..+..+.++++.+.|+|||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 479999999999987764 2245799999999876 433678999998753 34678899999999999999988
Q ss_pred Eec
Q 041509 144 GYN 146 (211)
Q Consensus 144 ~dn 146 (211)
.|-
T Consensus 80 ~d~ 82 (160)
T PLN02232 80 LDF 82 (160)
T ss_pred EEC
Confidence 774
No 189
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.52 E-value=4.5e-08 Score=81.99 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=81.0
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
.++....++|..+-. .+-+++||+ |||||.++..|-.. ..++++||+|+.|++.|.+. + ..=++.++|+.
T Consensus 109 ~vP~~l~emI~~~~~-g~F~~~lDL-GCGTGL~G~~lR~~----a~~ltGvDiS~nMl~kA~eK--g--~YD~L~~Aea~ 178 (287)
T COG4976 109 SVPELLAEMIGKADL-GPFRRMLDL-GCGTGLTGEALRDM----ADRLTGVDISENMLAKAHEK--G--LYDTLYVAEAV 178 (287)
T ss_pred ccHHHHHHHHHhccC-Cccceeeec-ccCcCcccHhHHHH----HhhccCCchhHHHHHHHHhc--c--chHHHHHHHHH
Confidence 444445555555433 336799999 99999988877543 46899999999999999764 2 22345677887
Q ss_pred HHhhhc-cCCccEEEEcC---CcCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 103 SLLLSH-FREADFVLIDC---NLENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 103 e~l~~l-~~~fD~VfiD~---~~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+++.+ +++||+|...- -..+....+-.+..+|+|||.+.+.-..+
T Consensus 179 ~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 179 LFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred HHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 777643 67999997421 12345677777888899988777654433
No 190
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.52 E-value=8.7e-07 Score=76.93 Aligned_cols=127 Identities=18% Similarity=0.162 Sum_probs=99.0
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcch
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDA 101 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda 101 (211)
.++.....+...++...+...|||+| ++.|-=|..+|+.+.. .|+|++.|+++..+...+++++ -...++.++..|+
T Consensus 68 ~vQd~sS~l~~~~L~~~~~~~VLD~C-AapGgKt~~la~~~~~-~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~ 145 (283)
T PF01189_consen 68 YVQDESSQLVALALDPQPGERVLDMC-AAPGGKTTHLAELMGN-KGEIVANDISPKRLKRLKENLKRLGVFNVIVINADA 145 (283)
T ss_dssp EEHHHHHHHHHHHHTTTTTSEEEESS-CTTSHHHHHHHHHTTT-TSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH
T ss_pred Eecccccccccccccccccccccccc-cCCCCceeeeeecccc-hhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecc
Confidence 34444556666667777888999997 9999999999998864 7999999999999999999998 3256788888999
Q ss_pred HHHhhhc-cCCccEEEEcCCc---------C----------------cHHHHHHHHHhcC----CCCcEEEEEecCCCCC
Q 041509 102 QSLLLSH-FREADFVLIDCNL---------E----------------NHEGVLRAVQAGN----KPNGAVVVGYNAFRKG 151 (211)
Q Consensus 102 ~e~l~~l-~~~fD~VfiD~~~---------~----------------~y~~~l~~~~~~L----~pgG~viv~dn~~~~~ 151 (211)
....+.. ...||.|++|++= + ...+.++.+.+.+ +|||.++-+...+.+.
T Consensus 146 ~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e 225 (283)
T PF01189_consen 146 RKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE 225 (283)
T ss_dssp HHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG
T ss_pred ccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH
Confidence 8886544 3469999999631 0 0266888889999 9999888777666543
No 191
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.51 E-value=2.5e-07 Score=85.08 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=71.3
Q ss_pred CCeEEEEccccHHHHHHHHHHHccC--CCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQ--TGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~--~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.+.|+++ |||+|......++|... ...+|++||.||.+....++.++ +..++|+++.||..++-. .++.|+|+
T Consensus 187 ~~vVldV-GAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--pekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDV-GAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--PEKVDIIV 263 (448)
T ss_dssp T-EEEEE-S-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--SS-EEEEE
T ss_pred ceEEEEe-CCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--CCceeEEE
Confidence 4679999 99999988776665421 13699999999988877666544 678899999999998743 57999998
Q ss_pred EcC-----CcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 117 IDC-----NLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 117 iD~-----~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
... ..+.-.+.+....+.|+|+| +++
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~G-i~I 294 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDG-IMI 294 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEE-EEE
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCC-EEe
Confidence 652 33455788888888999965 554
No 192
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.51 E-value=7.9e-07 Score=78.70 Aligned_cols=117 Identities=19% Similarity=0.118 Sum_probs=92.8
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC-CCcEEEEEc-c
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD-ASHVEFVIG-D 100 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~-~~~V~~~~g-d 100 (211)
.++|..++.+..|++..+++.|||=. ||||...+... + -+.+++++|++..|++-|+.|++.+ .....+..+ |
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPF-cGTGgiLiEag--l--~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~D 254 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPF-CGTGGILIEAG--L--MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLD 254 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCc-CCccHHHHhhh--h--cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecc
Confidence 68899999999999999999999995 88887544433 2 3899999999999999999999922 345555555 9
Q ss_pred hHHHhhhccC-CccEEEEcCCc------------CcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 101 AQSLLLSHFR-EADFVLIDCNL------------ENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 101 a~e~l~~l~~-~fD~VfiD~~~------------~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|... + +.+ ++|-|..|.+- +.|.+.++.+.+.|++||.++++-+
T Consensus 255 a~~l-p-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 255 ATNL-P-LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cccC-C-CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 8876 4 434 59999999642 1378899999999999887776554
No 193
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.51 E-value=7.8e-07 Score=72.81 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=68.3
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-c
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-F 109 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~ 109 (211)
.+..++. +..+|||+ |||.|..-.+|... .+.+.++||+|++.+..+.+ .-+.++.+|+.+.|... +
T Consensus 6 ~I~~~I~--pgsrVLDL-GCGdG~LL~~L~~~---k~v~g~GvEid~~~v~~cv~------rGv~Viq~Dld~gL~~f~d 73 (193)
T PF07021_consen 6 IIAEWIE--PGSRVLDL-GCGDGELLAYLKDE---KQVDGYGVEIDPDNVAACVA------RGVSVIQGDLDEGLADFPD 73 (193)
T ss_pred HHHHHcC--CCCEEEec-CCCchHHHHHHHHh---cCCeEEEEecCHHHHHHHHH------cCCCEEECCHHHhHhhCCC
Confidence 3444443 56899999 99999876666553 37889999999998766643 23679999999988755 7
Q ss_pred CCccEEEEcCCcC---cHHHHHHHHHhc
Q 041509 110 READFVLIDCNLE---NHEGVLRAVQAG 134 (211)
Q Consensus 110 ~~fD~VfiD~~~~---~y~~~l~~~~~~ 134 (211)
++||.|++.-... +....++++.+.
T Consensus 74 ~sFD~VIlsqtLQ~~~~P~~vL~EmlRV 101 (193)
T PF07021_consen 74 QSFDYVILSQTLQAVRRPDEVLEEMLRV 101 (193)
T ss_pred CCccEEehHhHHHhHhHHHHHHHHHHHh
Confidence 7999999986544 345667777664
No 194
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=8.7e-07 Score=75.85 Aligned_cols=94 Identities=17% Similarity=0.093 Sum_probs=74.3
Q ss_pred cCCc-CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE
Q 041509 19 MGQK-AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV 97 (211)
Q Consensus 19 ~~~~-~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~ 97 (211)
.+|. .+++...+-+...+...+.++|||| |+|.|..|..|++. +.+|++||+|+.+++.-++.+. ..++++++
T Consensus 8 ~GQnFL~d~~v~~kIv~~a~~~~~d~VlEI-GpG~GaLT~~Ll~~----~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi 81 (259)
T COG0030 8 LGQNFLIDKNVIDKIVEAANISPGDNVLEI-GPGLGALTEPLLER----AARVTAIEIDRRLAEVLKERFA-PYDNLTVI 81 (259)
T ss_pred cccccccCHHHHHHHHHhcCCCCCCeEEEE-CCCCCHHHHHHHhh----cCeEEEEEeCHHHHHHHHHhcc-cccceEEE
Confidence 3554 3556666666667777778899999 99999999999976 5689999999999999988876 35789999
Q ss_pred EcchHHHhhhccC--CccEEEEcCC
Q 041509 98 IGDAQSLLLSHFR--EADFVLIDCN 120 (211)
Q Consensus 98 ~gda~e~l~~l~~--~fD~VfiD~~ 120 (211)
+||++..-. .. .++.|+-+-+
T Consensus 82 ~~DaLk~d~--~~l~~~~~vVaNlP 104 (259)
T COG0030 82 NGDALKFDF--PSLAQPYKVVANLP 104 (259)
T ss_pred eCchhcCcc--hhhcCCCEEEEcCC
Confidence 999997632 22 6788885543
No 195
>PRK10742 putative methyltransferase; Provisional
Probab=98.43 E-value=1.8e-06 Score=73.39 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=72.3
Q ss_pred HHHHHHHHhhCCCC--eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C------C---CCcEEE
Q 041509 29 AEFISALAAGNNAQ--LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L------D---ASHVEF 96 (211)
Q Consensus 29 ~~lL~~l~~~~~~~--~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~------~---~~~V~~ 96 (211)
++.|...+...+.. +|||. -+|+|.-++.++.. +++|+.||.+|..+.+.+.+++ . . ..++++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~-TAGlG~Da~~las~----G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDA-TAGLGRDAFVLASV----GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEEC-CCCccHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 45666666656656 89999 59999999988864 6789999999999999999987 2 1 257999
Q ss_pred EEcchHHHhhhccCCccEEEEcCCc
Q 041509 97 VIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 97 ~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
+++|+.+.|......||+||+|...
T Consensus 150 ~~~da~~~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 150 IHASSLTALTDITPRPQVVYLDPMF 174 (250)
T ss_pred EeCcHHHHHhhCCCCCcEEEECCCC
Confidence 9999999998766689999999743
No 196
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.43 E-value=3e-06 Score=75.43 Aligned_cols=135 Identities=17% Similarity=0.166 Sum_probs=95.5
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh--c------CCCCcEEEEEcchHHHhhhccC
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL--G------LDASHVEFVIGDAQSLLLSHFR 110 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~--~------~~~~~V~~~~gda~e~l~~l~~ 110 (211)
..+++||-+ |.|-|...-.|.+. | .-++|+-+|.||+|++.++.+. + ....+++++..||...+..-.+
T Consensus 288 ~~a~~vLvl-GGGDGLAlRellky-P-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~ 364 (508)
T COG4262 288 RGARSVLVL-GGGDGLALRELLKY-P-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD 364 (508)
T ss_pred cccceEEEE-cCCchHHHHHHHhC-C-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence 567899999 99999654445432 2 2689999999999999999554 2 1256899999999999987778
Q ss_pred CccEEEEcCCcC-------cH-HHHHHHHHhcCCCCcEEEEEe-cCCC-CC-cee------cCCCc----EEEe-ecCC-
Q 041509 111 EADFVLIDCNLE-------NH-EGVLRAVQAGNKPNGAVVVGY-NAFR-KG-SWR------SSGSK----SQLL-PIGE- 167 (211)
Q Consensus 111 ~fD~VfiD~~~~-------~y-~~~l~~~~~~L~pgG~viv~d-n~~~-~~-~~~------~~~~~----~v~l-pig~- 167 (211)
.||+|++|-..+ -| .+++..+.+.|+++|.+++-- +.+. +. -|+ +.++. -+.+ .+|+
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeW 444 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEW 444 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCccccc
Confidence 999999996432 24 778899999999988776632 2332 22 243 23332 1223 3565
Q ss_pred cEEEEEEec
Q 041509 168 GLLVTRIAA 176 (211)
Q Consensus 168 Gl~v~~~~~ 176 (211)
|+.++.+..
T Consensus 445 Gf~l~~~~~ 453 (508)
T COG4262 445 GFILAAPGD 453 (508)
T ss_pred ceeeccccc
Confidence 777776655
No 197
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.42 E-value=4.6e-07 Score=76.36 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=76.8
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH-HHhhhc--cCCccEEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ-SLLLSH--FREADFVL 116 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~-e~l~~l--~~~fD~Vf 116 (211)
.+..|||+ |||.|-+..-|.+..+.++-+|+++|.+|.+++..+++-.-..+++.-.+-|.. +-+... .+.+|+|.
T Consensus 71 ~~~~ilEv-GCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 71 SAETILEV-GCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred Chhhheee-ccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEE
Confidence 34579999 999999888898887665689999999999999999987622344444444432 112211 56888775
Q ss_pred Ec----C-CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 ID----C-NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD----~-~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+= + .++.....++.+.++|+|||.+++.|
T Consensus 150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 32 2 34467889999999999999988876
No 198
>PRK04148 hypothetical protein; Provisional
Probab=98.41 E-value=3.1e-06 Score=65.69 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHH-HHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhh
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANA-TTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLL 106 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~-stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~ 106 (211)
.+++|.......+.+++||| |||+|+ .+..|++ .+..|+++|++|+..+.|+++ .++++.+|..+--.
T Consensus 4 i~~~l~~~~~~~~~~kileI-G~GfG~~vA~~L~~----~G~~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVEL-GIGFYFKVAKKLKE----SGFDVIVIDINEKAVEKAKKL------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHhcccccCCEEEEE-EecCCHHHHHHHHH----CCCEEEEEECCHHHHHHHHHh------CCeEEECcCCCCCH
Confidence 45666665555566889999 999997 5556663 267999999999998888765 36788999877655
Q ss_pred hccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 107 SHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 107 ~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.+-+.+|+|..==..++....+..+.+.+ +--+++
T Consensus 73 ~~y~~a~liysirpp~el~~~~~~la~~~--~~~~~i 107 (134)
T PRK04148 73 EIYKNAKLIYSIRPPRDLQPFILELAKKI--NVPLII 107 (134)
T ss_pred HHHhcCCEEEEeCCCHHHHHHHHHHHHHc--CCCEEE
Confidence 55789999996555555555555554444 333454
No 199
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.38 E-value=1.9e-06 Score=73.91 Aligned_cols=88 Identities=16% Similarity=0.091 Sum_probs=72.0
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC--CCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL--DASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~--~~~~V~~~~gda 101 (211)
.-|.+..-+..-+...+++.|||+ |.|||..|..|.++ +.+|+++|+||.|+....+.++| .+.+.++++||.
T Consensus 42 kNp~v~~~I~~ka~~k~tD~VLEv-GPGTGnLT~~lLe~----~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~ 116 (315)
T KOG0820|consen 42 KNPLVIDQIVEKADLKPTDVVLEV-GPGTGNLTVKLLEA----GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDF 116 (315)
T ss_pred cCHHHHHHHHhccCCCCCCEEEEe-CCCCCHHHHHHHHh----cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccc
Confidence 335666666666778889999999 99999999999987 57999999999999999998884 468999999999
Q ss_pred HHHhhhccCCccEEEEcC
Q 041509 102 QSLLLSHFREADFVLIDC 119 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD~ 119 (211)
...- ...||.++.+.
T Consensus 117 lK~d---~P~fd~cVsNl 131 (315)
T KOG0820|consen 117 LKTD---LPRFDGCVSNL 131 (315)
T ss_pred ccCC---CcccceeeccC
Confidence 7652 24688888653
No 200
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.38 E-value=4.9e-06 Score=77.77 Aligned_cols=105 Identities=11% Similarity=0.067 Sum_probs=82.4
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc-cCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH-FREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l-~~~fD~Vf 116 (211)
.+...+||| |||.|-+++.+|...| +..+++||+....+..|.+... ....++.++.+|+..+...+ .+++|-|+
T Consensus 346 ~~~p~~lEI-G~G~G~~~~~~A~~~p--~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 346 EKRKVFLEI-GFGMGEHFINQAKMNP--DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCCceEEEE-CCCchHHHHHHHHhCC--CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 345679999 9999999999998864 6789999999998887777765 33478999999986655444 56899999
Q ss_pred EcC---Cc--C------cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 117 IDC---NL--E------NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 117 iD~---~~--~------~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.. +. + -..+.++.+.+.|+|||.+.+..|
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 864 31 1 137899999999999998877655
No 201
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=1.2e-06 Score=68.84 Aligned_cols=111 Identities=11% Similarity=0.029 Sum_probs=80.8
Q ss_pred cCCcCCChhHHH-HHHHHHh---hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcE
Q 041509 19 MGQKAKEPNEAE-FISALAA---GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHV 94 (211)
Q Consensus 19 ~~~~~~~~~~~~-lL~~l~~---~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V 94 (211)
+.|+.-.|+.+. +++.+-. ...++.++|+ |||+|...+ +.+.+. ...|.++|++|++++.+++|..-+.-++
T Consensus 23 LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DL-gcgcGmLs~--a~sm~~-~e~vlGfDIdpeALEIf~rNaeEfEvqi 98 (185)
T KOG3420|consen 23 LEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDL-GCGCGMLSI--AFSMPK-NESVLGFDIDPEALEIFTRNAEEFEVQI 98 (185)
T ss_pred hhhCCCcHHHHHHHHHHHHhhhccccCcchhhh-cCchhhhHH--HhhcCC-CceEEeeecCHHHHHHHhhchHHhhhhh
Confidence 456777788764 4444422 2567899999 899999764 444543 6889999999999999999998445567
Q ss_pred EEEEcchHHHhhhccCCccEEEEcCCcC-----cHHHHHHHHHhc
Q 041509 95 EFVIGDAQSLLLSHFREADFVLIDCNLE-----NHEGVLRAVQAG 134 (211)
Q Consensus 95 ~~~~gda~e~l~~l~~~fD~VfiD~~~~-----~y~~~l~~~~~~ 134 (211)
++++.|..+.... .+.||-+++|.+.+ .-.++++..+++
T Consensus 99 dlLqcdildle~~-~g~fDtaviNppFGTk~~~aDm~fv~~al~~ 142 (185)
T KOG3420|consen 99 DLLQCDILDLELK-GGIFDTAVINPPFGTKKKGADMEFVSAALKV 142 (185)
T ss_pred heeeeeccchhcc-CCeEeeEEecCCCCcccccccHHHHHHHHHH
Confidence 9999999887664 58999999997643 124455555443
No 202
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.33 E-value=1.6e-06 Score=72.28 Aligned_cols=94 Identities=20% Similarity=0.154 Sum_probs=71.4
Q ss_pred CCChh-HHHHHHHHHh-hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEE
Q 041509 23 AKEPN-EAEFISALAA-GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVI 98 (211)
Q Consensus 23 ~~~~~-~~~lL~~l~~-~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~ 98 (211)
.++|+ .+..++..+. -.++..|+|. =||.|-.|+-.|.. +..|++||+||..+..||.|++ |..++|+|++
T Consensus 75 svTpe~ia~~iA~~v~~~~~~~~iida-f~g~gGntiqfa~~----~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~ 149 (263)
T KOG2730|consen 75 SVTPEKIAEHIANRVVACMNAEVIVDA-FCGVGGNTIQFALQ----GPYVIAIDIDPVKIACARHNAEVYGVPDRITFIC 149 (263)
T ss_pred EeccHHHHHHHHHHHHHhcCcchhhhh-hhcCCchHHHHHHh----CCeEEEEeccHHHHHHHhccceeecCCceeEEEe
Confidence 35554 3555554433 3377889998 36666677777653 5689999999999999999999 8888999999
Q ss_pred cchHHHhhhc---cCCccEEEEcCCc
Q 041509 99 GDAQSLLLSH---FREADFVLIDCNL 121 (211)
Q Consensus 99 gda~e~l~~l---~~~fD~VfiD~~~ 121 (211)
||.+++...+ ...+|+||+-++-
T Consensus 150 GD~ld~~~~lq~~K~~~~~vf~sppw 175 (263)
T KOG2730|consen 150 GDFLDLASKLKADKIKYDCVFLSPPW 175 (263)
T ss_pred chHHHHHHHHhhhhheeeeeecCCCC
Confidence 9999988766 3457899987643
No 203
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.33 E-value=3.7e-06 Score=68.70 Aligned_cols=96 Identities=18% Similarity=0.097 Sum_probs=77.4
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
+++|| |||.|+=++-||-+.| +.+++.+|.+...+..-+.-.. ++ ++++++++++.+ +...++||+|+.=+-
T Consensus 51 ~~lDi-GSGaGfPGipLaI~~p--~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~--~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDI-GSGAGFPGIPLAIARP--DLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE--PEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEE-TSTTTTTHHHHHHH-T--TSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH--TTTTT-EEEEEEESS
T ss_pred eEEec-CCCCCChhHHHHHhCC--CCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc--cccCCCccEEEeehh
Confidence 79999 9999999999998875 6899999999999988888777 54 589999999998 333689999997664
Q ss_pred cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 121 LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 121 ~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
. .....++.+.+++++||.++...
T Consensus 125 ~-~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 A-PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp S-SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred c-CHHHHHHHHHHhcCCCCEEEEEc
Confidence 4 46788999999999988766643
No 204
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.30 E-value=1.4e-06 Score=72.64 Aligned_cols=117 Identities=21% Similarity=0.166 Sum_probs=81.5
Q ss_pred HHHHHHHhh-----CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHH
Q 041509 30 EFISALAAG-----NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQS 103 (211)
Q Consensus 30 ~lL~~l~~~-----~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e 103 (211)
.||..+... .+..+.||. |+|+|-.|-.+.. +.--+|.-||..+.+++.|++++. ......++.+--..+
T Consensus 40 ~FL~~l~~~~~~~~~~~~~alDc-GAGIGRVTk~lLl---~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~ 115 (218)
T PF05891_consen 40 NFLKKLKRGRKPGKPKFNRALDC-GAGIGRVTKGLLL---PVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQD 115 (218)
T ss_dssp HHHHCCCT---------SEEEEE-T-TTTHHHHHTCC---CC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG
T ss_pred HHHHHHHhhcccCCCCcceEEec-ccccchhHHHHHH---HhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhh
Confidence 455554333 245679999 9999999877643 235799999999999999999887 334456777777777
Q ss_pred HhhhccCCccEEEEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 104 LLLSHFREADFVLIDCN-----LENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~-----~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.-|. .++||+|.+--- -.+..++++.+...|+|+|.|+|=+|+...+
T Consensus 116 f~P~-~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~ 167 (218)
T PF05891_consen 116 FTPE-EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG 167 (218)
T ss_dssp -----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS
T ss_pred ccCC-CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC
Confidence 7664 579999998632 2367899999999999999888888987765
No 205
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.30 E-value=3.1e-06 Score=74.66 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=76.1
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..+.+.|||+ |||+|..+.+.|.|- ..+|++||.+ +|++.|++.++ .+.++|.++.|...|+- +.++.|+|
T Consensus 175 DF~~kiVlDV-GaGSGILS~FAaqAG---A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--LPEk~Dvi 247 (517)
T KOG1500|consen 175 DFQDKIVLDV-GAGSGILSFFAAQAG---AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE--LPEKVDVI 247 (517)
T ss_pred ccCCcEEEEe-cCCccHHHHHHHHhC---cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc--CchhccEE
Confidence 3567889999 999999998888774 5799999997 58999999988 56899999999999872 57899999
Q ss_pred EEcCCcC-----cHHHHHHHHHhcCCCCcEEE
Q 041509 116 LIDCNLE-----NHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 116 fiD~~~~-----~y~~~l~~~~~~L~pgG~vi 142 (211)
+.....- ...+-+-.+.+.|+|+|..+
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 9765321 12333334557799988643
No 206
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.28 E-value=2e-06 Score=71.88 Aligned_cols=106 Identities=10% Similarity=0.013 Sum_probs=74.8
Q ss_pred HHHHHHHHhh-CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh
Q 041509 29 AEFISALAAG-NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS 107 (211)
Q Consensus 29 ~~lL~~l~~~-~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~ 107 (211)
.+-|..++.. .++..|||| |||+|.|+-.|.. .+-..+++|++|.|+++|.+. . +. -.++.+|--+-+|.
T Consensus 38 eRaLELLalp~~~~~~iLDI-GCGsGLSg~vL~~----~Gh~wiGvDiSpsML~~a~~~-e-~e--gdlil~DMG~Glpf 108 (270)
T KOG1541|consen 38 ERALELLALPGPKSGLILDI-GCGSGLSGSVLSD----SGHQWIGVDISPSMLEQAVER-E-LE--GDLILCDMGEGLPF 108 (270)
T ss_pred HHHHHHhhCCCCCCcEEEEe-ccCCCcchheecc----CCceEEeecCCHHHHHHHHHh-h-hh--cCeeeeecCCCCCC
Confidence 3344444332 247789999 9999999887764 356789999999999999862 1 11 34778888888886
Q ss_pred ccCCccEEEE--------cCCcC------cHHHHHHHHHhcCCCCcEEEE
Q 041509 108 HFREADFVLI--------DCNLE------NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 108 l~~~fD~Vfi--------D~~~~------~y~~~l~~~~~~L~pgG~viv 143 (211)
-.++||-++. +++++ ....++..+...|++|+..++
T Consensus 109 rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 109 RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 6889998874 23332 235678888888888776544
No 207
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.27 E-value=6e-06 Score=68.58 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=71.2
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
|.|| ||--||..++|.+.-. ..+++++|+++.-++.|+++++ ++.++|+++.||.++.++. .+..|.|+|.+--
T Consensus 1 vaDI-GtDHgyLpi~L~~~~~--~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADI-GTDHGYLPIYLLKNGK--APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMG 76 (205)
T ss_dssp EEEE-T-STTHHHHHHHHTTS--EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEEEEE-
T ss_pred Ccee-ccchhHHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEEecCC
Confidence 6899 8999999999997642 4689999999999999999998 7789999999999998763 4458999998765
Q ss_pred C-cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 122 E-NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 122 ~-~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
. .-.+.++.....+++...+++.-|
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEES
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCC
Confidence 5 346677777666655445666444
No 208
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.24 E-value=4.5e-05 Score=63.62 Aligned_cols=108 Identities=13% Similarity=0.010 Sum_probs=85.9
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~Vfi 117 (211)
.++.+||++ |=|.|...-.+-++- .-+-+-||.+|+..+..|++--.-.++|-++.|.-.+.++.+ ++.||-|+-
T Consensus 100 tkggrvLnV-GFGMgIidT~iQe~~---p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNV-GFGMGIIDTFIQEAP---PDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEe-ccchHHHHHHHhhcC---CcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEe
Confidence 688999999 999998777776552 357788999999998887764445688999999999998877 678999999
Q ss_pred cCCcCcH---HHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 118 DCNLENH---EGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 118 D~~~~~y---~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
|.-.+.| .+..+.+.++|+|+|. +-.-|.+..+
T Consensus 176 DTy~e~yEdl~~~hqh~~rLLkP~gv-~SyfNg~~~~ 211 (271)
T KOG1709|consen 176 DTYSELYEDLRHFHQHVVRLLKPEGV-FSYFNGLGAD 211 (271)
T ss_pred echhhHHHHHHHHHHHHhhhcCCCce-EEEecCcccc
Confidence 9886655 5577889999999764 4446766554
No 209
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.23 E-value=4.7e-06 Score=72.67 Aligned_cols=128 Identities=12% Similarity=0.008 Sum_probs=84.2
Q ss_pred CcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHcc-----CCCcEEEEEeCChhHHHHHHHHhc--CC-CC
Q 041509 21 QKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAH-----QTGGRVVCILRRVEEYKLSKKILG--LD-AS 92 (211)
Q Consensus 21 ~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~-----~~~g~v~tiE~~~~~~~~Ar~~~~--~~-~~ 92 (211)
+..-++..++++..++...+..+|+|-| ||+|.+-+.+...+. ....+++++|+++.++..|+.|+. +. ..
T Consensus 27 ~~~TP~~i~~l~~~~~~~~~~~~VlDPa-cGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLLNPKKGDSVLDPA-CGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GC---HHHHHHHHHHHTT-TTEEEEETT--TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred eeehHHHHHHHHHhhhhccccceeechh-hhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 3456666789999999888888899994 999998777666431 136799999999999999998876 32 33
Q ss_pred cEEEEEcchHHHhhhc-cCCccEEEEcCCcCc------------------------HHHHHHHHHhcCCCCcEE--EEEe
Q 041509 93 HVEFVIGDAQSLLLSH-FREADFVLIDCNLEN------------------------HEGVLRAVQAGNKPNGAV--VVGY 145 (211)
Q Consensus 93 ~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~~------------------------y~~~l~~~~~~L~pgG~v--iv~d 145 (211)
...+..+|........ ...||+|+.+.+... ...+++.+...|+++|.+ ++.+
T Consensus 106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 106 NINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp GCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 4678999987653322 468999998753210 124778889999998864 4434
Q ss_pred cCCC
Q 041509 146 NAFR 149 (211)
Q Consensus 146 n~~~ 149 (211)
..+.
T Consensus 186 ~~L~ 189 (311)
T PF02384_consen 186 GFLF 189 (311)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 4543
No 210
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.21 E-value=4.9e-06 Score=68.04 Aligned_cols=93 Identities=24% Similarity=0.286 Sum_probs=69.8
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEE---
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLI--- 117 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~Vfi--- 117 (211)
..+.|+ |+|+|..+...|.+ .-+|++||.||..++.|++|++ ....++++++|||.+.- .+..|.|..
T Consensus 34 d~~~DL-GaGsGiLs~~Aa~~----A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~---fe~ADvvicEml 105 (252)
T COG4076 34 DTFADL-GAGSGILSVVAAHA----AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD---FENADVVICEML 105 (252)
T ss_pred hceeec-cCCcchHHHHHHhh----hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc---ccccceeHHHHh
Confidence 778999 99999998888876 3689999999999999999998 55688999999998773 256787753
Q ss_pred cCCc--CcHHHHHHHHHhcCCCCcEEE
Q 041509 118 DCNL--ENHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 118 D~~~--~~y~~~l~~~~~~L~pgG~vi 142 (211)
|... +.....++.+...||-.+.++
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCccc
Confidence 3221 223445555555666555543
No 211
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.12 E-value=2e-05 Score=67.57 Aligned_cols=109 Identities=19% Similarity=0.155 Sum_probs=80.3
Q ss_pred cCCc-CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE
Q 041509 19 MGQK-AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV 97 (211)
Q Consensus 19 ~~~~-~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~ 97 (211)
.+|. .+.+..++.+...+...+...|||| |+|+|..|-.|+... .+|++||.|+.+.+..++.+. ...+++++
T Consensus 8 ~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEi-GpG~G~lT~~L~~~~----~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi 81 (262)
T PF00398_consen 8 LGQNFLVDPNIADKIVDALDLSEGDTVLEI-GPGPGALTRELLKRG----KRVIAVEIDPDLAKHLKERFA-SNPNVEVI 81 (262)
T ss_dssp CTSSEEEHHHHHHHHHHHHTCGTTSEEEEE-SSTTSCCHHHHHHHS----SEEEEEESSHHHHHHHHHHCT-TCSSEEEE
T ss_pred CCcCeeCCHHHHHHHHHhcCCCCCCEEEEe-CCCCccchhhHhccc----CcceeecCcHhHHHHHHHHhh-hcccceee
Confidence 3454 3567788888888777788999999 999999999998864 799999999999999998776 35789999
Q ss_pred EcchHHHhhhc--cCCccEEEEcCCcCcHHHHHHHHHh
Q 041509 98 IGDAQSLLLSH--FREADFVLIDCNLENHEGVLRAVQA 133 (211)
Q Consensus 98 ~gda~e~l~~l--~~~fD~VfiD~~~~~y~~~l~~~~~ 133 (211)
++|+.++-... ......|+-.-+...-..++..+..
T Consensus 82 ~~D~l~~~~~~~~~~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 82 NGDFLKWDLYDLLKNQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp ES-TTTSCGGGHCSSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred ecchhccccHHhhcCCceEEEEEecccchHHHHHHHhh
Confidence 99998763321 2345566654443333455555554
No 212
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.11 E-value=3.6e-05 Score=74.61 Aligned_cols=96 Identities=11% Similarity=-0.030 Sum_probs=70.9
Q ss_pred CChhHHHHHHHHHhh-CCCCeEEEEccccHHHHHHHHHHHcc--------------------------------------
Q 041509 24 KEPNEAEFISALAAG-NNAQLMVVACANVANATTLALAAAAH-------------------------------------- 64 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~-~~~~~VLEi~Gtg~G~stl~la~a~~-------------------------------------- 64 (211)
+.+..+.-+-.++.- .+...++|- .||+|...+..|..+.
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP-~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDP-MCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEcc-CCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 445555544455543 346789999 7999988777665321
Q ss_pred --CCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc-cCCccEEEEcCC
Q 041509 65 --QTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH-FREADFVLIDCN 120 (211)
Q Consensus 65 --~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~ 120 (211)
....+++++|+|+++++.|++|+. ++.+.|+|..+|+.+..... .+.||+|+.+.+
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP 312 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPP 312 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCC
Confidence 012479999999999999999998 77788999999998864322 257999999965
No 213
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.08 E-value=1.6e-05 Score=66.38 Aligned_cols=97 Identities=18% Similarity=0.123 Sum_probs=78.1
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCC-ccEEEEc
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFRE-ADFVLID 118 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~-fD~VfiD 118 (211)
+++++|| |+|.|+=++-||-..+ +.+||-+|.....+..-++-.+ -..++++++++.++++-.+ .+ ||+|..=
T Consensus 68 ~~~~~DI-GSGaGfPGipLAI~~p--~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~--~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDI-GSGAGFPGIPLAIAFP--DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE--KKQYDVVTSR 142 (215)
T ss_pred CCEEEEe-CCCCCCchhhHHHhcc--CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc--cccCcEEEee
Confidence 6899999 9999999999996654 5779999999998888887766 2357899999999998543 23 9999865
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+= .......+.+.+++++||.++.
T Consensus 143 Av-a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 143 AV-ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred hc-cchHHHHHHHHHhcccCCcchh
Confidence 43 2466788999999999887654
No 214
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.02 E-value=4.2e-05 Score=64.55 Aligned_cols=92 Identities=8% Similarity=0.058 Sum_probs=56.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHH-HHHHhc-C--CCCcEEEEEcchHHHhhhccCCccE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKL-SKKILG-L--DASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~-Ar~~~~-~--~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
.+.+.|||+ |||+|+.|.++++. ..++|++||.+++++.. .+++.+ - ...+++ .-+..+..+. ...+|+
T Consensus 74 ~~~~~vlDi-G~gtG~~t~~l~~~---ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~--~~~~~~~~~d-~~~~Dv 146 (228)
T TIGR00478 74 VKNKIVLDV-GSSTGGFTDCALQK---GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR--YVTPADIFPD-FATFDV 146 (228)
T ss_pred CCCCEEEEc-ccCCCHHHHHHHHc---CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc--cCCHhHcCCC-ceeeeE
Confidence 356789999 99999999999975 24799999999976654 443322 0 112333 1122222111 235666
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+|+... ..+..+.+.|+| |.++.
T Consensus 147 sfiS~~-----~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 147 SFISLI-----SILPELDLLLNP-NDLTL 169 (228)
T ss_pred EEeehH-----hHHHHHHHHhCc-CeEEE
Confidence 665443 357777777887 55443
No 215
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.01 E-value=5.1e-05 Score=58.99 Aligned_cols=85 Identities=19% Similarity=0.100 Sum_probs=63.1
Q ss_pred HHHHHHHHhh----CCCCeEEEEccccHHHHHHHHHHHcc--CCCcEEEEEeCChhHHHHHHHHhc--C--CCCcEEEEE
Q 041509 29 AEFISALAAG----NNAQLMVVACANVANATTLALAAAAH--QTGGRVVCILRRVEEYKLSKKILG--L--DASHVEFVI 98 (211)
Q Consensus 29 ~~lL~~l~~~----~~~~~VLEi~Gtg~G~stl~la~a~~--~~~g~v~tiE~~~~~~~~Ar~~~~--~--~~~~V~~~~ 98 (211)
++++..++.. .++..|+|+ |+|-||.+..|+..++ ..+-+|++||.+++..+.|.+..+ . ...++++..
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~-GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 88 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDL-GSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQ 88 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEe-CCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhc
Confidence 4556666555 778899999 8999999999998442 136899999999999999988877 3 346788888
Q ss_pred cchHHHhhhccCCccEEE
Q 041509 99 GDAQSLLLSHFREADFVL 116 (211)
Q Consensus 99 gda~e~l~~l~~~fD~Vf 116 (211)
++..+... ....++++
T Consensus 89 ~~~~~~~~--~~~~~~~v 104 (141)
T PF13679_consen 89 GDIADESS--SDPPDILV 104 (141)
T ss_pred cchhhhcc--cCCCeEEE
Confidence 87765432 34445554
No 216
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.00 E-value=0.00014 Score=63.26 Aligned_cols=117 Identities=10% Similarity=0.033 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH-
Q 041509 28 EAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL- 104 (211)
Q Consensus 28 ~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~- 104 (211)
..+-+..+....+|-+||||| ||.|---+-.....+...-+|.-.|.+|..++..++.++ ++.+.++|.++||.+.
T Consensus 123 i~~ai~~L~~~g~pvrIlDIA-aG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~ 201 (311)
T PF12147_consen 123 IRQAIARLREQGRPVRILDIA-AGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD 201 (311)
T ss_pred HHHHHHHHHhcCCceEEEEec-cCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh
Confidence 334455555556888999995 999976555555554323689999999999999999998 7778789999999775
Q ss_pred -hhhccCCccEEEEcCCcCc------HHHHHHHHHhcCCCCcEEEEEec
Q 041509 105 -LLSHFREADFVLIDCNLEN------HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 105 -l~~l~~~fD~VfiD~~~~~------y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+..+...++++++.+-.+. ..+-+.-+...+.|||.+|. .|
T Consensus 202 ~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIy-Tg 249 (311)
T PF12147_consen 202 SLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIY-TG 249 (311)
T ss_pred HhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEE-cC
Confidence 4444667899999874432 34467777778899876654 44
No 217
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.99 E-value=1.9e-05 Score=60.63 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=46.4
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchH
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQ 102 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~ 102 (211)
.++|+ ||++|+.+++++...+ .++++++|.+|++.+.++++++ ....+++++.....
T Consensus 1 ~vlDi-Ga~~G~~~~~~~~~~~--~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDV-GANIGDTSLYFARKGA--EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEc-cCCccHHHHHHHHhCC--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 38999 9999999999998753 4699999999999999999987 22245777766554
No 218
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.95 E-value=0.00011 Score=64.46 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=71.0
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-- 108 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-- 108 (211)
.|..+ ...++..++|. -+|-|--|..++..++ .|+|+++|.||++++.|++.++.+.+++++++++..++...+
T Consensus 12 vl~~L-~~~~ggiyVD~-TlG~GGHS~~iL~~l~--~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 12 VVEGL-NIKPDGIYIDC-TLGFGGHSKAILEQLG--TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred HHHhc-CcCCCCEEEEe-CCCChHHHHHHHHhCC--CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 34444 34566789999 6899999999998874 499999999999999999998855679999999998875433
Q ss_pred --cCCccEEEEcCCcC
Q 041509 109 --FREADFVLIDCNLE 122 (211)
Q Consensus 109 --~~~fD~VfiD~~~~ 122 (211)
.+++|.|+.|-..+
T Consensus 88 ~~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 88 LLVTKIDGILVDLGVS 103 (305)
T ss_pred cCCCcccEEEEeccCC
Confidence 25799999997655
No 219
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.91 E-value=0.00019 Score=59.60 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=68.7
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---------CC-CCcEEEEE
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---------LD-ASHVEFVI 98 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---------~~-~~~V~~~~ 98 (211)
.+++ ..+...+.+..+|+ |||.|-..+..|... ...+.++||+.+...+.|+...+ +. ..++++..
T Consensus 32 ~~il-~~~~l~~~dvF~Dl-GSG~G~~v~~aal~~--~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 32 SKIL-DELNLTPDDVFYDL-GSGVGNVVFQAALQT--GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHH-HHTT--TT-EEEEE-S-TTSHHHHHHHHHH----SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHH-HHhCCCCCCEEEEC-CCCCCHHHHHHHHHc--CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 3444 34456667788999 999999877666543 25679999999999988876443 22 46799999
Q ss_pred cchHHH--hhhccCCccEEEEcCCc--CcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 99 GDAQSL--LLSHFREADFVLIDCNL--ENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 99 gda~e~--l~~l~~~fD~VfiD~~~--~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
||..+. ...+-..-|+||++... +.....+......|++ |..||.--.+.+.
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~-G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKP-GARIISTKPFCPR 163 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-T-T-EEEESS-SS-T
T ss_pred cCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCC-CCEEEECCCcCCC
Confidence 998653 22223567999997542 3445556666777887 6666654444433
No 220
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.82 E-value=0.0002 Score=59.97 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=71.0
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhH----HHHHHHHhcCCCCcEEEEEcchHHHh--hhccCC
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEE----YKLSKKILGLDASHVEFVIGDAQSLL--LSHFRE 111 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~----~~~Ar~~~~~~~~~V~~~~gda~e~l--~~l~~~ 111 (211)
..+..+||=+ |.++|.+-.+++.-..+ .|.|++||.+|.. +++|++ ..||--+.+||..-- ..+-+.
T Consensus 71 ik~gskVLYL-GAasGTTVSHvSDIvg~-~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 71 IKPGSKVLYL-GAASGTTVSHVSDIVGP-DGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp --TT-EEEEE-TTTTSHHHHHHHHHHTT-TSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--
T ss_pred CCCCCEEEEe-cccCCCccchhhhccCC-CCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhccccc
Confidence 4557899999 99999998889988864 8999999999954 344443 467888999986432 123569
Q ss_pred ccEEEEcCCcCcHHHHH-HHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVL-RAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l-~~~~~~L~pgG~viv~d 145 (211)
.|+||.|-..++..+.+ ..+...|++||.++++-
T Consensus 144 VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 144 VDVIFQDVAQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 99999998877665544 44445799998887754
No 221
>PHA01634 hypothetical protein
Probab=97.80 E-value=6.7e-05 Score=57.74 Aligned_cols=73 Identities=10% Similarity=0.131 Sum_probs=55.8
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C-CCCcEEEEEcchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L-DASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~-~~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
.+.++|++| |.++|.|+++++..- ..+|+++|.+|...+..+++++ . .-++..... + .+..-++||...
T Consensus 27 vk~KtV~dI-GA~iGdSaiYF~l~G---AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----e-W~~~Y~~~Di~~ 97 (156)
T PHA01634 27 VYQRTIQIV-GADCGSSALYFLLRG---ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----E-WNGEYEDVDIFV 97 (156)
T ss_pred ecCCEEEEe-cCCccchhhHHhhcC---ccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----c-ccccCCCcceEE
Confidence 466899999 999999999998652 5789999999999999999988 2 223222222 1 233468999999
Q ss_pred EcCC
Q 041509 117 IDCN 120 (211)
Q Consensus 117 iD~~ 120 (211)
+|++
T Consensus 98 iDCe 101 (156)
T PHA01634 98 MDCE 101 (156)
T ss_pred EEcc
Confidence 9985
No 222
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=97.79 E-value=0.00013 Score=62.21 Aligned_cols=127 Identities=12% Similarity=0.118 Sum_probs=77.6
Q ss_pred CCChhHHHHHHHHHh----hCCCCeEEEEccccHHHHHHHHHHHcc---CCCcEEEEEeCC-------------------
Q 041509 23 AKEPNEAEFISALAA----GNNAQLMVVACANVANATTLALAAAAH---QTGGRVVCILRR------------------- 76 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~----~~~~~~VLEi~Gtg~G~stl~la~a~~---~~~g~v~tiE~~------------------- 76 (211)
++.+..-.-|..+++ ..-|..|+|. |+.-|.|++.++..+. ..+-+++..|.=
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~-GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~ 131 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVEC-GVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEF 131 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE---TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTC
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEE-eeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhh
Confidence 344444444444433 2346789999 9999998887655442 224568777631
Q ss_pred -------hhHHHHHHHHhc--CC-CCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC-cHHHHHHHHHhcCCCCcEEEEE
Q 041509 77 -------VEEYKLSKKILG--LD-ASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE-NHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 77 -------~~~~~~Ar~~~~--~~-~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~-~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.-..+..++|+. ++ .++++++.|...+.++.. .+++-++.+|++.- -....++.+.+.|.||| ++++
T Consensus 132 ~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GG-iIi~ 210 (248)
T PF05711_consen 132 HEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGG-IIIF 210 (248)
T ss_dssp CGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEE-EEEE
T ss_pred hhcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCe-EEEE
Confidence 114566777887 43 578999999999999864 46889999999863 23678889999999855 6666
Q ss_pred ecCCCCC
Q 041509 145 YNAFRKG 151 (211)
Q Consensus 145 dn~~~~~ 151 (211)
|+...+|
T Consensus 211 DDY~~~g 217 (248)
T PF05711_consen 211 DDYGHPG 217 (248)
T ss_dssp SSTTTHH
T ss_pred eCCCChH
Confidence 8865544
No 223
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.78 E-value=0.00023 Score=66.71 Aligned_cols=99 Identities=15% Similarity=0.048 Sum_probs=68.8
Q ss_pred CCcCCChhHHHHHHHHHhhC-------CCCeEEEEccccHHHHHHHHHHHccCC------CcEEEEEeCChhHHHHHHHH
Q 041509 20 GQKAKEPNEAEFISALAAGN-------NAQLMVVACANVANATTLALAAAAHQT------GGRVVCILRRVEEYKLSKKI 86 (211)
Q Consensus 20 ~~~~~~~~~~~lL~~l~~~~-------~~~~VLEi~Gtg~G~stl~la~a~~~~------~g~v~tiE~~~~~~~~Ar~~ 86 (211)
|+..-++..++++..++... ...+|||. +||+|.+.+.++..++.. .-.++++|+|+..+..|+.+
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP-~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDP-CCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeC-CCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 44455666777777665322 34589999 799999988888776421 24789999999999999999
Q ss_pred hcCC-CCcEEEEEcchHHHh----hhccCCccEEEEcC
Q 041509 87 LGLD-ASHVEFVIGDAQSLL----LSHFREADFVLIDC 119 (211)
Q Consensus 87 ~~~~-~~~V~~~~gda~e~l----~~l~~~fD~VfiD~ 119 (211)
+... ...+.+.++|..... ....+.||+|+.+.
T Consensus 83 l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNP 120 (524)
T TIGR02987 83 LGEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNP 120 (524)
T ss_pred HhhcCCCCceeeecccccccccccccccCcccEEEeCC
Confidence 8722 234667777755321 11135899999875
No 224
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.75 E-value=0.00011 Score=59.11 Aligned_cols=92 Identities=20% Similarity=0.170 Sum_probs=57.2
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH-----Hhhhc----cC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS-----LLLSH----FR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e-----~l~~l----~~ 110 (211)
++.++||+ ||+.|-++-++++... ..++|++||+.+. . ....+.++.||..+ .+... .+
T Consensus 23 ~~~~vlDl-G~aPGGws~~~~~~~~-~~~~v~avDl~~~---------~-~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDL-GAAPGGWSQVLLQRGG-PAGRVVAVDLGPM---------D-PLQNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEE-T-TTSHHHHHHHTSTT-TEEEEEEEESSST---------G-S-TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEc-CCcccceeeeeeeccc-ccceEEEEecccc---------c-cccceeeeecccchhhHHHhhhhhcccccc
Confidence 45789999 8999999999987652 2699999999986 1 01234444444322 22221 26
Q ss_pred CccEEEEcCCc--------Cc------HHHHHHHHHhcCCCCcEEEE
Q 041509 111 EADFVLIDCNL--------EN------HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 111 ~fD~VfiD~~~--------~~------y~~~l~~~~~~L~pgG~viv 143 (211)
++|+|+.|... .. ....+..+...|+|||.+++
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~ 137 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVI 137 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEE
Confidence 99999999821 11 13445556677899887665
No 225
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.74 E-value=0.00025 Score=61.33 Aligned_cols=109 Identities=14% Similarity=0.121 Sum_probs=66.6
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCC--CcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDA--SHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~--~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...+|++|||+ |+|.|..+.++....+ .-.+++++|.++.|.+.++.-++... ...........+..+ ..+.|+
T Consensus 30 p~f~P~~vLD~-GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~DL 105 (274)
T PF09243_consen 30 PDFRPRSVLDF-GSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP--FPPDDL 105 (274)
T ss_pred cCCCCceEEEe-cCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc--CCCCcE
Confidence 35689999999 9999976555555554 46789999999999999998877221 111111101111111 234499
Q ss_pred EEEcCC-----cCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 115 VLIDCN-----LENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 115 VfiD~~-----~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
|++..- .....+.++.+-..+. +.+++++.....|
T Consensus 106 vi~s~~L~EL~~~~r~~lv~~LW~~~~--~~LVlVEpGt~~G 145 (274)
T PF09243_consen 106 VIASYVLNELPSAARAELVRSLWNKTA--PVLVLVEPGTPAG 145 (274)
T ss_pred EEEehhhhcCCchHHHHHHHHHHHhcc--CcEEEEcCCChHH
Confidence 987531 1334566666665554 3677777655543
No 226
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.74 E-value=0.0004 Score=58.04 Aligned_cols=102 Identities=11% Similarity=0.017 Sum_probs=81.8
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
..++.|| ||--+|.+++|..-- ...++++.|+++..++.|.+++. ++.++|+...||.+..+. .++.+|.+++.
T Consensus 17 ~~~iaDI-GsDHAYLp~~Lv~~~--~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-~~d~~d~ivIA 92 (226)
T COG2384 17 GARIADI-GSDHAYLPIYLVKNN--PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-LEDEIDVIVIA 92 (226)
T ss_pred CCceeec-cCchhHhHHHHHhcC--CcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-ccCCcCEEEEe
Confidence 3449999 999999999998764 36899999999999999999998 788999999999987765 36689999999
Q ss_pred CCcCc-HHHHHHHHHhcCCCCcEEEEEec
Q 041509 119 CNLEN-HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 119 ~~~~~-y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+--+. -.+.+++-.+.|+.--.++..-|
T Consensus 93 GMGG~lI~~ILee~~~~l~~~~rlILQPn 121 (226)
T COG2384 93 GMGGTLIREILEEGKEKLKGVERLILQPN 121 (226)
T ss_pred CCcHHHHHHHHHHhhhhhcCcceEEECCC
Confidence 87663 46788888877752124554333
No 227
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.73 E-value=0.00014 Score=63.35 Aligned_cols=121 Identities=15% Similarity=0.078 Sum_probs=78.8
Q ss_pred CChhHHHHHHHHHhhC-CCCeEEEEccccHHHHHHHHHHHc----cC--CCcEEEEEeCChhHHHHHHHHhc--------
Q 041509 24 KEPNEAEFISALAAGN-NAQLMVVACANVANATTLALAAAA----HQ--TGGRVVCILRRVEEYKLSKKILG-------- 88 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~-~~~~VLEi~Gtg~G~stl~la~a~----~~--~~g~v~tiE~~~~~~~~Ar~~~~-------- 88 (211)
-+|..=+.|...+... ++-+|+-. ||+||-=+..||..+ +. ..-+|+++|+|+.+++.|++..=
T Consensus 98 Rd~~~f~~L~~~~~~~~~~irIWSA-gCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~ 176 (287)
T PRK10611 98 REAHHFPILAEHARRRSGEYRVWSA-AASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTL 176 (287)
T ss_pred CCcHHHHHHHHHHHhcCCCEEEEEc-cccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcC
Confidence 3444444454433322 33579999 999995443333332 21 13579999999999999987620
Q ss_pred ------------------------CCCCcEEEEEcchHHHhhhccCCccEEEEc-----CCcCcHHHHHHHHHhcCCCCc
Q 041509 89 ------------------------LDASHVEFVIGDAQSLLLSHFREADFVLID-----CNLENHEGVLRAVQAGNKPNG 139 (211)
Q Consensus 89 ------------------------~~~~~V~~~~gda~e~l~~l~~~fD~VfiD-----~~~~~y~~~l~~~~~~L~pgG 139 (211)
.+...|+|...|..+.-....++||+||.- .+.+...+.++.+.+.|+|||
T Consensus 177 p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG 256 (287)
T PRK10611 177 SPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDG 256 (287)
T ss_pred CHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCc
Confidence 012457888888765211124789999963 233456789999999999999
Q ss_pred EEEEEe
Q 041509 140 AVVVGY 145 (211)
Q Consensus 140 ~viv~d 145 (211)
.+++.+
T Consensus 257 ~L~lG~ 262 (287)
T PRK10611 257 LLFAGH 262 (287)
T ss_pred EEEEeC
Confidence 888765
No 228
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.68 E-value=0.00013 Score=66.08 Aligned_cols=114 Identities=15% Similarity=0.076 Sum_probs=86.9
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhh-ccC
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLS-HFR 110 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~-l~~ 110 (211)
+....++..+|||+| +..|-=|.++|.-+. +.|.|++-|.+...+...+.|+. | -++..+.+.|..++-.. ..+
T Consensus 235 ~aL~Pq~gERIlDmc-AAPGGKTt~IAalMk-n~G~I~AnD~n~~r~~~l~~n~~rlG-v~ntiv~n~D~~ef~~~~~~~ 311 (460)
T KOG1122|consen 235 MALDPQPGERILDMC-AAPGGKTTHIAALMK-NTGVIFANDSNENRLKSLKANLHRLG-VTNTIVSNYDGREFPEKEFPG 311 (460)
T ss_pred eecCCCCCCeecchh-cCCCchHHHHHHHHc-CCceEEecccchHHHHHHHHHHHHhC-CCceEEEccCcccccccccCc
Confidence 335667889999997 999999999998775 48999999999999999999998 5 45667778888765322 234
Q ss_pred CccEEEEcCCcC---------------------c----HHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 111 EADFVLIDCNLE---------------------N----HEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 111 ~fD~VfiD~~~~---------------------~----y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
+||-|++|++=+ . ..+.+..+.+++++||.++-.......
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 899999996311 1 156778888899998877665554443
No 229
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.66 E-value=0.0001 Score=60.84 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=64.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccC----C---CcEEEEEeCChhHHHHHHHH------------------h-c--C--
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQ----T---GGRVVCILRRVEEYKLSKKI------------------L-G--L-- 89 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~----~---~g~v~tiE~~~~~~~~Ar~~------------------~-~--~-- 89 (211)
++-+|+-. ||++|-=+-.||..+.. . .-+|++.|+|+.+++.|++- + . +
T Consensus 31 ~~lrIWSa-gCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSA-GCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEET-T-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEEC-CCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 45678999 99999654444433322 1 24999999999999998753 2 1 1
Q ss_pred ------CCCcEEEEEcchHHHhhhccCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 90 ------DASHVEFVIGDAQSLLLSHFREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 90 ------~~~~V~~~~gda~e~l~~l~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+.++|+|...|..+. ....++||+||.-- +.+...+.++.+...|+|||.+++...
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~-~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDP-DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S-------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eeEChHHcCceEEEecccCCC-CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 124689999999882 22368999999642 344557899999999999988887653
No 230
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00049 Score=57.08 Aligned_cols=93 Identities=22% Similarity=0.175 Sum_probs=67.3
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hh----hhcc-CC
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LL----LSHF-RE 111 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l----~~l~-~~ 111 (211)
.+...|+|+ |+..|-.+-.+++.+.. +++|++||+.|- +. -..|.++.+|+.+ .+ ..+. .+
T Consensus 44 ~~~~~ViDL-GAAPGgWsQva~~~~~~-~~~ivavDi~p~---------~~-~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 44 KPGMVVVDL-GAAPGGWSQVAAKKLGA-GGKIVAVDILPM---------KP-IPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred cCCCEEEEc-CCCCCcHHHHHHHHhCC-CCcEEEEECccc---------cc-CCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 457889999 89999999999988864 678999999872 21 2348999998643 22 2223 35
Q ss_pred ccEEEEcCCc--------CcH------HHHHHHHHhcCCCCcEEEE
Q 041509 112 ADFVLIDCNL--------ENH------EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~VfiD~~~--------~~y------~~~l~~~~~~L~pgG~viv 143 (211)
+|+|..|... .++ ...++.+...|+|+|.+++
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 7999999765 122 4456666778999887776
No 231
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.60 E-value=0.00059 Score=65.69 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=69.9
Q ss_pred CCeEEEEccccHHHHHHHHHHHcc-----CC-----CcEEEEEeCChhH--------------HHHHHHHhc-------C
Q 041509 41 AQLMVVACANVANATTLALAAAAH-----QT-----GGRVVCILRRVEE--------------YKLSKKILG-------L 89 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~-----~~-----~g~v~tiE~~~~~--------------~~~Ar~~~~-------~ 89 (211)
.=+|+|+ |=|+|+..+.+..... .+ .-+++++|..|-. .+.+++..+ +
T Consensus 58 ~~~i~e~-gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 58 RFVIAET-GFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred cEEEEec-CcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3569999 8999998888776551 11 2378999986521 222222221 1
Q ss_pred C------CC--cEEEEEcchHHHhhhccCCccEEEEcCCc--C----cHHHHHHHHHhcCCCCcEEE
Q 041509 90 D------AS--HVEFVIGDAQSLLLSHFREADFVLIDCNL--E----NHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 90 ~------~~--~V~~~~gda~e~l~~l~~~fD~VfiD~~~--~----~y~~~l~~~~~~L~pgG~vi 142 (211)
. .+ +++++.||+.+.++++...+|.+|+|+-. . .-.++++.+.++++|||.++
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 1 12 46688999999999877789999999622 2 23789999999999977655
No 232
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.60 E-value=0.00035 Score=57.93 Aligned_cols=104 Identities=11% Similarity=-0.032 Sum_probs=70.6
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CC---CCcEEEEEcchHHHhh----hccCCcc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LD---ASHVEFVIGDAQSLLL----SHFREAD 113 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~---~~~V~~~~gda~e~l~----~l~~~fD 113 (211)
+|||| |+|||--+.++|..++ .-+-..-|.++....-.+.++. ++ ...+.+=..+...-.. ...++||
T Consensus 28 ~vLEi-aSGtGqHa~~FA~~lP--~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEI-ASGTGQHAVYFAQALP--HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEE-cCCccHHHHHHHHHCC--CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 59999 9999999999999996 4778899999988666665554 32 2223332222211111 0146899
Q ss_pred EEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 114 FVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 114 ~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
.||.-- ..+..+..++.+.++|++||.++ .+..+..
T Consensus 105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~-~YGPF~~ 145 (204)
T PF06080_consen 105 AIFCINMLHISPWSAVEGLFAGAARLLKPGGLLF-LYGPFNR 145 (204)
T ss_pred eeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEE-EeCCccc
Confidence 999642 23356789999999999977655 4777753
No 233
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.57 E-value=0.00017 Score=59.39 Aligned_cols=100 Identities=14% Similarity=0.036 Sum_probs=70.2
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
..++++|||+ |+|+|..++..+.+. ...|++.|++|.....++-|.+.+.-.|.+...|..- . +..||+++.
T Consensus 77 tVrgkrVLd~-gagsgLvaIAaa~aG---A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g--~--~~~~Dl~La 148 (218)
T COG3897 77 TVRGKRVLDL-GAGSGLVAIAAARAG---AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG--S--PPAFDLLLA 148 (218)
T ss_pred ccccceeeec-ccccChHHHHHHHhh---hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC--C--CcceeEEEe
Confidence 3567899999 899999888887764 5689999999999998888888444668888888764 2 578999987
Q ss_pred cC---CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DC---NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~---~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.- ++......+....++...|-.|+|.|
T Consensus 149 gDlfy~~~~a~~l~~~~~~l~~~g~~vlvgd 179 (218)
T COG3897 149 GDLFYNHTEADRLIPWKDRLAEAGAAVLVGD 179 (218)
T ss_pred eceecCchHHHHHHHHHHHHHhCCCEEEEeC
Confidence 42 44433334443333223344455544
No 234
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00033 Score=60.95 Aligned_cols=106 Identities=16% Similarity=0.117 Sum_probs=81.4
Q ss_pred HHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC-CCcEEEEEcchHHHhhhc-
Q 041509 35 LAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD-ASHVEFVIGDAQSLLLSH- 108 (211)
Q Consensus 35 l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~-~~~V~~~~gda~e~l~~l- 108 (211)
+.+..+|++||-| |.|-|-.--.-+.. +.-+.+.-+|+|...++..++++. ++ ..+|.++.||...++...
T Consensus 116 l~s~~npkkvlVV-gggDggvlrevikH--~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~ 192 (337)
T KOG1562|consen 116 LCSHPNPKKVLVV-GGGDGGVLREVIKH--KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK 192 (337)
T ss_pred cccCCCCCeEEEE-ecCCccceeeeecc--ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc
Confidence 3566789999999 77666432222222 234789999999999999999987 44 568999999999999877
Q ss_pred cCCccEEEEcCCcC------cH-HHHHHHHHhcCCCCcEEEE
Q 041509 109 FREADFVLIDCNLE------NH-EGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 109 ~~~fD~VfiD~~~~------~y-~~~l~~~~~~L~pgG~viv 143 (211)
.++||.|.+|.... .| +.+++.+.+.|+++|.++.
T Consensus 193 ~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 193 ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 78999999997543 23 6689999999998776544
No 235
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.54 E-value=0.0066 Score=53.71 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=77.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCC--CcEEEEEeCChhHHHHHHHHhc-CCCCcEEE--EEcchHHHhhhc-----c
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQT--GGRVVCILRRVEEYKLSKKILG-LDASHVEF--VIGDAQSLLLSH-----F 109 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~--~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~--~~gda~e~l~~l-----~ 109 (211)
++..++|+ |||.|.=|-.|..++.+. ..+.+.||++.++++.+.+++. ..-..+++ ++||..+.+..+ .
T Consensus 76 ~~~~lIEL-GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVEL-GSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEE-CCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 34479999 999999999888888532 3578999999999999999988 43344555 999988765432 1
Q ss_pred CCccEEE-EcCCcC-----cHHHHHHHHHh-cCCCCcEEEEEecCC
Q 041509 110 READFVL-IDCNLE-----NHEGVLRAVQA-GNKPNGAVVVGYNAF 148 (211)
Q Consensus 110 ~~fD~Vf-iD~~~~-----~y~~~l~~~~~-~L~pgG~viv~dn~~ 148 (211)
....++| +..... +-...++.+.+ .|.|||.+++.=+..
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 2345554 443333 33567888888 899999988865433
No 236
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.54 E-value=0.0012 Score=47.78 Aligned_cols=100 Identities=23% Similarity=0.165 Sum_probs=67.7
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCc--EEEEEcchHH-Hhhhcc-CCccEEEEcC
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASH--VEFVIGDAQS-LLLSHF-READFVLIDC 119 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~--V~~~~gda~e-~l~~l~-~~fD~VfiD~ 119 (211)
++|+ |||+|..+ .++..... ...++++|.++.++..++..... ... +.+..+|... .++... ..||++....
T Consensus 52 ~ld~-~~g~g~~~-~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDI-GCGTGRLA-LLARLGGR-GAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEe-cCCcCHHH-HHHHhCCC-CceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeee
Confidence 9999 99999977 44433221 24889999999999886555432 222 7889999876 244223 3799993332
Q ss_pred CcC--cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 120 NLE--NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 120 ~~~--~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
... .....+..+.+.++|+|.+++.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 211 1367888899999998887776544
No 237
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.53 E-value=0.00068 Score=60.11 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=79.2
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc---
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID--- 118 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD--- 118 (211)
+..+|+ |.|+|-.+-.+.... -+|-.|+.+...+..++.++. ..|+.+.||...-.|. -|+||+-
T Consensus 179 ~~avDv-GgGiG~v~k~ll~~f----p~ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~~P~----~daI~mkWiL 246 (342)
T KOG3178|consen 179 NVAVDV-GGGIGRVLKNLLSKY----PHIKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQDTPK----GDAIWMKWIL 246 (342)
T ss_pred ceEEEc-CCcHhHHHHHHHHhC----CCCceeecCHHHHHhhhhhhc---CCcceecccccccCCC----cCeEEEEeec
Confidence 678999 999999988888743 259999999999988888874 1288999998765553 4699874
Q ss_pred --CCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 119 --CNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 119 --~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
-.-++-.++++.|...|.|||.|++.||+.+..
T Consensus 247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e 281 (342)
T KOG3178|consen 247 HDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEE 281 (342)
T ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Confidence 344567899999999999999999999988763
No 238
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.51 E-value=0.00024 Score=60.12 Aligned_cols=86 Identities=19% Similarity=0.116 Sum_probs=55.7
Q ss_pred HHHHHHHhhCCC--CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc----CC------CCcEEEE
Q 041509 30 EFISALAAGNNA--QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG----LD------ASHVEFV 97 (211)
Q Consensus 30 ~lL~~l~~~~~~--~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~----~~------~~~V~~~ 97 (211)
+.|...+...+. .+|||. -+|.|-=++-+|. + +++|+++|.+|-.+.+.+.-++ .. ..+|+++
T Consensus 63 ~~l~kA~Glk~~~~~~VLDa-TaGLG~Da~vlA~-~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~ 137 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDA-TAGLGRDAFVLAS-L---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLI 137 (234)
T ss_dssp SHHHHHTT-BTTB---EEET-T-TTSHHHHHHHH-H---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEE
T ss_pred cHHHHHhCCCCCCCCEEEEC-CCcchHHHHHHHc-c---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEE
Confidence 445555544443 379999 6999999888885 3 6799999999999888776654 21 1489999
Q ss_pred EcchHHHhhhccCCccEEEEcCC
Q 041509 98 IGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 98 ~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
++|+.++|....++||+|++|..
T Consensus 138 ~~d~~~~L~~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 138 HGDALEYLRQPDNSFDVVYFDPM 160 (234)
T ss_dssp ES-CCCHCCCHSS--SEEEE--S
T ss_pred cCCHHHHHhhcCCCCCEEEECCC
Confidence 99999998844789999999974
No 239
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.49 E-value=0.00078 Score=58.15 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=73.1
Q ss_pred CCeEEEEccccHH---HH-HHHHHHHccC---CCcEEEEEeCChhHHHHHHHHh-------------------c-C----
Q 041509 41 AQLMVVACANVAN---AT-TLALAAAAHQ---TGGRVVCILRRVEEYKLSKKIL-------------------G-L---- 89 (211)
Q Consensus 41 ~~~VLEi~Gtg~G---~s-tl~la~a~~~---~~g~v~tiE~~~~~~~~Ar~~~-------------------~-~---- 89 (211)
+-+|+-+ ||+|| || |+.|.+..+. ..-+|++.|+|...++.|+.-. . .
T Consensus 97 ~irIWSa-aCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 97 PIRIWSA-ACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred ceEEEec-CcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 6689999 99999 33 4445555532 2468999999999999987321 1 0
Q ss_pred ------CCCcEEEEEcchHHHhhhccCCccEEEEc-----CCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 90 ------DASHVEFVIGDAQSLLLSHFREADFVLID-----CNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 90 ------~~~~V~~~~gda~e~l~~l~~~fD~VfiD-----~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+...|+|...|..+--+ ..+.||+||+= .+.+...+.++.....|+|||.+++.++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 11246666666654432 35789999963 3555667889999999999998888764
No 240
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.0022 Score=57.83 Aligned_cols=118 Identities=14% Similarity=-0.040 Sum_probs=83.5
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccC--C----------------------------Cc-----
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQ--T----------------------------GG----- 68 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~--~----------------------------~g----- 68 (211)
+-+..+.-|-.++.-.+.+.++|- =||+|...+..|.-.+. + .+
T Consensus 175 LketLAaAil~lagw~~~~pl~DP-mCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 175 LKETLAAAILLLAGWKPDEPLLDP-MCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred chHHHHHHHHHHcCCCCCCccccC-CCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 334445555555554455579999 48899888877765431 0 01
Q ss_pred --EEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcC-----------cHHHHHHHHHh
Q 041509 69 --RVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLE-----------NHEGVLRAVQA 133 (211)
Q Consensus 69 --~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~-----------~y~~~l~~~~~ 133 (211)
.++++|+|+.+++.|+.|.. |+.+.|+|..+|+..+-+. .+.+|+|+.+.+-+ .|.++.+.+++
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHH
Confidence 47899999999999999998 8899999999999987543 27899999986421 46666777777
Q ss_pred cCCCCcEEEE
Q 041509 134 GNKPNGAVVV 143 (211)
Q Consensus 134 ~L~pgG~viv 143 (211)
.+.-.+..++
T Consensus 333 ~~~~ws~~v~ 342 (381)
T COG0116 333 LLAGWSRYVF 342 (381)
T ss_pred HhcCCceEEE
Confidence 7764344444
No 241
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.45 E-value=0.00058 Score=60.68 Aligned_cols=99 Identities=18% Similarity=0.040 Sum_probs=65.3
Q ss_pred CCCeEEEEccccHH-HHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---------C--CCCcEEEEEcchHHH-hh
Q 041509 40 NAQLMVVACANVAN-ATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---------L--DASHVEFVIGDAQSL-LL 106 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G-~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---------~--~~~~V~~~~gda~e~-l~ 106 (211)
+..+|||+ |||-| ..--|... .-++++++|++++.++.|++..+ . ..-..+|+.+|+... +.
T Consensus 62 ~~~~VLDl-~CGkGGDL~Kw~~~----~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~ 136 (331)
T PF03291_consen 62 PGLTVLDL-CCGKGGDLQKWQKA----KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR 136 (331)
T ss_dssp TT-EEEEE-T-TTTTTHHHHHHT----T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred CCCeEEEe-cCCCchhHHHHHhc----CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence 56889999 79955 45555542 25899999999999999999982 1 123578899997532 22
Q ss_pred h-c---cCCccEEEEcCCcC-------cHHHHHHHHHhcCCCCcEEEE
Q 041509 107 S-H---FREADFVLIDCNLE-------NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 107 ~-l---~~~fD~VfiD~~~~-------~y~~~l~~~~~~L~pgG~viv 143 (211)
. + ..+||+|-+=.... .-...++.+-..|+|||.+|.
T Consensus 137 ~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp CTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred hhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 1 25999997654321 225588888999999887654
No 242
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.42 E-value=0.00079 Score=60.86 Aligned_cols=101 Identities=19% Similarity=0.073 Sum_probs=74.1
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCC-cEEEEEcchHHHhhhccCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDAS-HVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~-~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
+-++||. =+|+|.=++..+..++. ..+|+.-|+||++.+..++|++ ++.+ ++++.+.||...+......||+|=+
T Consensus 50 ~~~~lDa-laasGvR~iRy~~E~~~-~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDA-LAASGVRGIRYAKELAG-VDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEET-T-TTSHHHHHHHHH-SS-ECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEec-cccccHHHHHHHHHcCC-CCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 3479999 48999999999888643 5799999999999999999998 5555 7999999999988544789999999
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+--. -..+++.+.+.++.||.+.|.
T Consensus 128 DPfGS-p~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 128 DPFGS-PAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp --SS---HHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCC-ccHhHHHHHHHhhcCCEEEEe
Confidence 97533 456888888888876665553
No 243
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.39 E-value=0.0019 Score=55.34 Aligned_cols=93 Identities=14% Similarity=0.035 Sum_probs=64.5
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+..++||| |.|-|-.|..++... .+|++.|.++.|...-++ +| .+++ +..+. ...+.+||+|-.=
T Consensus 93 ~~~~~lLDl-GAGdG~VT~~l~~~f----~~v~aTE~S~~Mr~rL~~--kg----~~vl--~~~~w-~~~~~~fDvIscL 158 (265)
T PF05219_consen 93 WKDKSLLDL-GAGDGEVTERLAPLF----KEVYATEASPPMRWRLSK--KG----FTVL--DIDDW-QQTDFKFDVISCL 158 (265)
T ss_pred ccCCceEEe-cCCCcHHHHHHHhhc----ceEEeecCCHHHHHHHHh--CC----CeEE--ehhhh-hccCCceEEEeeh
Confidence 366789999 999999999998765 579999999998654433 23 2222 23332 2225689999642
Q ss_pred C--Cc-CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 C--NL-ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~--~~-~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
- ++ ......++.+.+.|+|+|.++++-
T Consensus 159 NvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 159 NVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 1 11 134678899999999999887753
No 244
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.38 E-value=0.0021 Score=57.26 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=67.4
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccE
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
+...+.++|+-+ |. |.|..++-+|.++ +.+|+++|.+++..+.|++.-+ -.++.+.-.+.++.+.+.||+
T Consensus 162 ~~~~pG~~V~I~-G~GGlGh~avQ~Aka~---ga~Via~~~~~~K~e~a~~lGA-----d~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVV-GAGGLGHMAVQYAKAM---GAEVIAITRSEEKLELAKKLGA-----DHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred cCCCCCCEEEEE-CCcHHHHHHHHHHHHc---CCeEEEEeCChHHHHHHHHhCC-----cEEEEcCCchhhHHhHhhCcE
Confidence 445667888777 43 6778888899887 5899999999999999987522 223332222233333345999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
|+.-.. . ..++...+.|+++|.++++-+.
T Consensus 233 ii~tv~-~---~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVG-P---ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEECCC-h---hhHHHHHHHHhcCCEEEEECCC
Confidence 987766 3 3344555566679999887765
No 245
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0022 Score=57.41 Aligned_cols=99 Identities=19% Similarity=0.118 Sum_probs=80.2
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
+.+|+|.. +|+|.=++.+|...+. -+|+.=|++|++.+.+++|++ +.......++.||...+.++...||+|=+|.
T Consensus 53 ~~~v~Dal-satGiRgIRya~E~~~--~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDAL-SATGIRGIRYAVETGV--VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDP 129 (380)
T ss_pred CeEEeecc-cccchhHhhhhhhcCc--cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCC
Confidence 88999994 9999999999887643 389999999999999999999 5456788888999999987678999998886
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
--. -..+++.+.+.++.+|.+-+
T Consensus 130 FGS-PaPFlDaA~~s~~~~G~l~v 152 (380)
T COG1867 130 FGS-PAPFLDAALRSVRRGGLLCV 152 (380)
T ss_pred CCC-CchHHHHHHHHhhcCCEEEE
Confidence 322 34677777777777776544
No 246
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.35 E-value=0.00057 Score=53.45 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=55.5
Q ss_pred EEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccC-CccEEEEc------CCcC------cHHHHHHHHHh
Q 041509 69 RVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFR-EADFVLID------CNLE------NHEGVLRAVQA 133 (211)
Q Consensus 69 ~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~-~fD~VfiD------~~~~------~y~~~l~~~~~ 133 (211)
+|+++|+.+++++..++.++ +..++|++++..=..+...+.. ++|+++.+ +++. .-...++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 69999999999999999998 6677999999887665543444 89999876 2332 23678888999
Q ss_pred cCCCCcEEEEE
Q 041509 134 GNKPNGAVVVG 144 (211)
Q Consensus 134 ~L~pgG~viv~ 144 (211)
+|+|||.++++
T Consensus 81 lL~~gG~i~iv 91 (140)
T PF06962_consen 81 LLKPGGIITIV 91 (140)
T ss_dssp HEEEEEEEEEE
T ss_pred hhccCCEEEEE
Confidence 99998877664
No 247
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.28 E-value=0.0014 Score=57.61 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=60.4
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-- 108 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-- 108 (211)
.+..| ...+...+||. --|.|--|..+.+.++ +++|+++|.||++++.|++++....+++.+++++..++...+
T Consensus 12 vl~~L-~~~~~g~~vD~-T~G~GGHS~aiL~~~~--~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 12 VLEAL-NPKPGGIYVDC-TFGGGGHSKAILEKLP--NGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHH-T--TT-EEEET-T-TTSHHHHHHHHT-T--T-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred HHHhh-CcCCCceEEee-cCCcHHHHHHHHHhCC--CCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence 34444 35566788999 5777777788888775 499999999999999999999866889999999987654322
Q ss_pred ---cCCccEEEEcCCcC
Q 041509 109 ---FREADFVLIDCNLE 122 (211)
Q Consensus 109 ---~~~fD~VfiD~~~~ 122 (211)
...+|.|++|...+
T Consensus 88 ~~~~~~~dgiL~DLGvS 104 (310)
T PF01795_consen 88 LNGINKVDGILFDLGVS 104 (310)
T ss_dssp TTTTS-EEEEEEE-S--
T ss_pred ccCCCccCEEEEccccC
Confidence 24899999997665
No 248
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=97.26 E-value=0.0029 Score=52.10 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=83.4
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCC--cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTG--GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~--g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda 101 (211)
..|.--..++.+.-..+|+.|+|+ |+--|-|++|.|.-+-..+ -+|.++|+|-.-++-+... ..+|.|+.|+.
T Consensus 53 k~p~D~~~yQellw~~~P~lvIE~-Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----~p~i~f~egss 127 (237)
T COG3510 53 KSPSDMWNYQELLWELQPSLVIEF-GSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----VPDILFIEGSS 127 (237)
T ss_pred CCHHHHHHHHHHHHhcCCceeEee-ccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----CCCeEEEeCCC
Confidence 445555567777777899999999 9999999999987665433 5899999886554433221 46799999986
Q ss_pred HHH-----hhhccC--CccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 102 QSL-----LLSHFR--EADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 102 ~e~-----l~~l~~--~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+. +..+.+ +-=||++|+++. .....++...++|..|--++|.|...
T Consensus 128 ~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v 183 (237)
T COG3510 128 TDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNV 183 (237)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccc
Confidence 542 222222 345667788876 45667777888888766666666444
No 249
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.18 E-value=0.007 Score=53.93 Aligned_cols=99 Identities=26% Similarity=0.215 Sum_probs=68.5
Q ss_pred CCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc-chHHHhhhc-c-CCccE
Q 041509 39 NNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG-DAQSLLLSH-F-READF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g-da~e~l~~l-~-~~fD~ 114 (211)
.++.+|+-+ |+| .|..++.+++.+. ..+|+.+|.+++.++.|++... .+.+..... +..+....+ . ..+|+
T Consensus 167 ~~~~~V~V~-GaGpIGLla~~~a~~~G--a~~Viv~d~~~~Rl~~A~~~~g--~~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 167 RPGGTVVVV-GAGPIGLLAIALAKLLG--ASVVIVVDRSPERLELAKEAGG--ADVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcC--CceEEEeCCCHHHHHHHHHhCC--CeEeecCccccHHHHHHHHhCCCCCCE
Confidence 344579999 877 5888888888764 5899999999999999998654 111111112 333333223 2 37999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|-... ....++.+.+.++|+|.+++.-
T Consensus 242 vie~~G---~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 242 VIEAVG---SPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred EEECCC---CHHHHHHHHHHhcCCCEEEEEe
Confidence 997666 4457888888999999887743
No 250
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.16 E-value=0.0039 Score=55.59 Aligned_cols=86 Identities=15% Similarity=0.064 Sum_probs=62.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+.+.+||+ |+++|-.|-.|++. +++|++||..+- +.. +. ...+|+.+.+|.....+. .+++|.++.|
T Consensus 210 ~~g~~vlDL-GAsPGGWT~~L~~r----G~~V~AVD~g~l----~~~-L~-~~~~V~h~~~d~fr~~p~-~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDL-GAAPGGWTYQLVRR----GMFVTAVDNGPM----AQS-LM-DTGQVEHLRADGFKFRPP-RKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEe-CCCCcHHHHHHHHc----CCEEEEEechhc----CHh-hh-CCCCEEEEeccCcccCCC-CCCCCEEEEe
Confidence 467889999 99999999988864 679999996552 111 11 246899999999887764 6789999999
Q ss_pred CCcCcHHHHHHHHHhcCCC
Q 041509 119 CNLENHEGVLRAVQAGNKP 137 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~p 137 (211)
..-. ..+..+.+.+.|..
T Consensus 278 mve~-P~rva~lm~~Wl~~ 295 (357)
T PRK11760 278 MVEK-PARVAELMAQWLVN 295 (357)
T ss_pred cccC-HHHHHHHHHHHHhc
Confidence 7532 33455555555543
No 251
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0048 Score=51.17 Aligned_cols=105 Identities=12% Similarity=0.117 Sum_probs=75.9
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh--hhccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL--LSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l--~~l~~~fD~ 114 (211)
...+..+||=+ |..+|.+..+.+--++ .|.+++||.+|.....--...+ ...||--+.+||..-- ..+-+..|+
T Consensus 73 pi~~g~~VLYL-GAasGTTvSHVSDIv~--~G~iYaVEfs~R~~reLl~~a~-~R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 73 PIKEGSKVLYL-GAASGTTVSHVSDIVG--EGRIYAVEFSPRPMRELLDVAE-KRPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CcCCCCEEEEe-eccCCCcHhHHHhccC--CCcEEEEEecchhHHHHHHHHH-hCCCceeeecccCCcHHhhhhcccccE
Confidence 34568899999 9999999889998874 6999999999986543322222 2467888899985422 223578999
Q ss_pred EEEcCCcCcHHHHHH-HHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLR-AVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~-~~~~~L~pgG~viv~d 145 (211)
||.|-..++..+.+. .+...|+++|.++++-
T Consensus 149 iy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 149 IYQDVAQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEEecCCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 999988887766544 3455688888766543
No 252
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.10 E-value=0.0089 Score=55.85 Aligned_cols=131 Identities=18% Similarity=0.105 Sum_probs=94.3
Q ss_pred CCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCC--CcEEEEEeCChhHHHHHHHHhc--CCCCcEE
Q 041509 20 GQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQT--GGRVVCILRRVEEYKLSKKILG--LDASHVE 95 (211)
Q Consensus 20 ~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~--~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~ 95 (211)
++..-++.+.+++..++...+.++|.|-| ||+|-+-+..+..+... ...+++.|+++....+|+.|+- +....+.
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~Dpa-cGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPA-CGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCC-CchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 33456777889999998876677899996 99998766666666432 3779999999999999999987 4333567
Q ss_pred EEEcchHHHhhh----ccCCccEEEEcCCc----------------------------CcHHHHHHHHHhcCCCCc--EE
Q 041509 96 FVIGDAQSLLLS----HFREADFVLIDCNL----------------------------ENHEGVLRAVQAGNKPNG--AV 141 (211)
Q Consensus 96 ~~~gda~e~l~~----l~~~fD~VfiD~~~----------------------------~~y~~~l~~~~~~L~pgG--~v 141 (211)
..++|...-... ..++||+|+...+. ..+..+++.+...|+|+| ++
T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 778877654322 23679988764211 123678888999999865 35
Q ss_pred EEEecCCCCC
Q 041509 142 VVGYNAFRKG 151 (211)
Q Consensus 142 iv~dn~~~~~ 151 (211)
++.++++.++
T Consensus 325 vl~~gvlfr~ 334 (489)
T COG0286 325 VLPDGVLFRG 334 (489)
T ss_pred EecCCcCcCC
Confidence 6667788775
No 253
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.07 E-value=0.0072 Score=52.87 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=66.8
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc----cCCc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH----FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l----~~~f 112 (211)
...+....+|. -=|.|--+-.+.+.++. .|+++++|.||++++.|++.+..+.+++.+++++..++...+ .+.+
T Consensus 20 ~~~~~giyiD~-TlG~GGHS~~iL~~l~~-~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~v 97 (314)
T COG0275 20 APKPDGIYIDG-TLGAGGHSRAILEKLPD-LGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKV 97 (314)
T ss_pred ccCCCcEEEEe-cCCCcHhHHHHHHhCCC-CCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCce
Confidence 44566778998 45666666777777764 799999999999999999999866789999999987765433 3589
Q ss_pred cEEEEcCCcCc
Q 041509 113 DFVLIDCNLEN 123 (211)
Q Consensus 113 D~VfiD~~~~~ 123 (211)
|-|++|-..+-
T Consensus 98 DGiL~DLGVSS 108 (314)
T COG0275 98 DGILLDLGVSS 108 (314)
T ss_pred eEEEEeccCCc
Confidence 99999976653
No 254
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.04 E-value=0.0025 Score=56.24 Aligned_cols=100 Identities=17% Similarity=0.104 Sum_probs=68.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---CC----CCcEEEEEcchHH-Hhhhc--
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---LD----ASHVEFVIGDAQS-LLLSH-- 108 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~~----~~~V~~~~gda~e-~l~~l-- 108 (211)
.+.+.++++ |||-|--.+-.-.|. -+.++++|+.+..++.|++..+ +. .-.+.|+.||... .|..+
T Consensus 116 ~~~~~~~~L-gCGKGGDLlKw~kAg---I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e 191 (389)
T KOG1975|consen 116 KRGDDVLDL-GCGKGGDLLKWDKAG---IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE 191 (389)
T ss_pred cccccccee-ccCCcccHhHhhhhc---ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc
Confidence 467789999 999886555444332 4799999999999999998886 22 2358999999743 22222
Q ss_pred -cCC-ccEEEEcCCc----C---cHHHHHHHHHhcCCCCcEEE
Q 041509 109 -FRE-ADFVLIDCNL----E---NHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 109 -~~~-fD~VfiD~~~----~---~y~~~l~~~~~~L~pgG~vi 142 (211)
..+ ||+|-.-... + .-.-.+..+...|+|||.+|
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 344 9998543211 1 22446777788899977554
No 255
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.91 E-value=0.0051 Score=51.27 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=63.8
Q ss_pred HHHHHHHhh--cCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh
Q 041509 10 TKAYLKTLK--MGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL 87 (211)
Q Consensus 10 ~~ay~~~~~--~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~ 87 (211)
...|-...+ ..+....|. -.++..+-...+...|-|+ |||-+-. |.+++. .-+|.+.|.-..
T Consensus 41 F~~YH~Gfr~Qv~~WP~nPv-d~iI~~l~~~~~~~viaD~-GCGdA~l----a~~~~~-~~~V~SfDLva~--------- 104 (219)
T PF05148_consen 41 FDIYHEGFRQQVKKWPVNPV-DVIIEWLKKRPKSLVIADF-GCGDAKL----AKAVPN-KHKVHSFDLVAP--------- 104 (219)
T ss_dssp HHHHHHHHHHHHCTSSS-HH-HHHHHHHCTS-TTS-EEEE-S-TT-HH----HHH--S----EEEEESS-S---------
T ss_pred HHHHHHHHHHHHhcCCCCcH-HHHHHHHHhcCCCEEEEEC-CCchHHH----HHhccc-CceEEEeeccCC---------
Confidence 355665433 233344443 3344444443334578999 9999874 455542 457999998531
Q ss_pred cCCCCcEEEEEcchHHHhhhccCCccEEEEcCC--cCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 88 GLDASHVEFVIGDAQSLLLSHFREADFVLIDCN--LENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 88 ~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~--~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+. ++..|...+ |-.++..|+++..-. ..+|.++++++.|.|+|||.+.|++
T Consensus 105 ---n~~--Vtacdia~v-PL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 105 ---NPR--VTACDIANV-PLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp ---STT--EEES-TTS--S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCC--EEEecCccC-cCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEE
Confidence 123 445666444 422689999987643 4589999999999999999999977
No 256
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0061 Score=54.57 Aligned_cols=114 Identities=19% Similarity=0.118 Sum_probs=80.8
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCC--CcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhh-------
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQT--GGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLL------- 106 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~--~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~------- 106 (211)
...+..+|||+| ...|..|+.|.+++... .|.|++=|.++..+..-+..+. -...++.+...|+...-.
T Consensus 152 ~v~p~~~VLDmC-AAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 152 GVKPGDKVLDMC-AAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred ccCCCCeeeeec-cCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCc
Confidence 456788899997 99999999999988632 5799999999998887776665 224445555555433211
Q ss_pred -hccCCccEEEEcCCc--------------C------------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 107 -SHFREADFVLIDCNL--------------E------------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 107 -~l~~~fD~VfiD~~~--------------~------------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.-...||-|++|.+= + -..+++....++|++||.++-....+++-
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 013589999999410 0 11456777788899999998877777653
No 257
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0012 Score=60.87 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=78.1
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhc------cCCccE
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSH------FREADF 114 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l------~~~fD~ 114 (211)
..+|-+ |-|.|....++-..++ ..++++||++|++++.|+.++. .-..+..++..|+.+.+.+. +..||+
T Consensus 297 ~~~lvv-g~ggG~l~sfl~~~~p--~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 297 GKQLVV-GLGGGGLPSFLHMSLP--KFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred CcEEEE-ecCCCccccceeeecC--ccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 345666 6666887777776664 5899999999999999999998 33457888899999887654 348999
Q ss_pred EEEcCCcC----------cH--HHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 115 VLIDCNLE----------NH--EGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 115 VfiD~~~~----------~y--~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
+++|-+-. .+ ...+..++..|.|.|.+++ |...+
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~i--nlv~r 419 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFII--NLVTR 419 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEE--EEecC
Confidence 99985322 12 5577777888999997766 65544
No 258
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.011 Score=50.15 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=67.9
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc-chHHHhhh-ccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG-DAQSLLLS-HFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g-da~e~l~~-l~~~fD~V 115 (211)
..+.+.+||| |++||-+|-++.+.- ..+|++||.--..+.. .++ ...+|..+.. |+..+-+. +.+..|++
T Consensus 77 ~~k~kv~LDi-GsSTGGFTd~lLq~g---Ak~VyavDVG~~Ql~~---kLR-~d~rV~~~E~tN~r~l~~~~~~~~~d~~ 148 (245)
T COG1189 77 DVKGKVVLDI-GSSTGGFTDVLLQRG---AKHVYAVDVGYGQLHW---KLR-NDPRVIVLERTNVRYLTPEDFTEKPDLI 148 (245)
T ss_pred CCCCCEEEEe-cCCCccHHHHHHHcC---CcEEEEEEccCCccCH---hHh-cCCcEEEEecCChhhCCHHHcccCCCeE
Confidence 3567889999 999999999998752 5799999987543321 122 2455555544 34333222 24588999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
++|-..--....+..+..++.|++-++.
T Consensus 149 v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 149 VIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred EEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 9998877777888888888888665443
No 259
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.74 E-value=0.0011 Score=61.33 Aligned_cols=100 Identities=12% Similarity=-0.047 Sum_probs=55.7
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
..-+.+||+ |||+|.++.+|.+. +-.+.++-.+.......+-.++ |....+-++ +..-||...+.||+|-.
T Consensus 116 g~iR~~LDv-GcG~aSF~a~l~~r----~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~---~s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 116 GGIRTALDV-GCGVASFGAYLLER----NVTTMSFAPNDEHEAQVQFALERGVPAMIGVL---GSQRLPFPSNAFDMVHC 187 (506)
T ss_pred CceEEEEec-cceeehhHHHHhhC----CceEEEcccccCCchhhhhhhhcCcchhhhhh---ccccccCCccchhhhhc
Confidence 344568999 99999999988753 3344444443332222221122 322211111 23345544789999954
Q ss_pred c----CCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 118 D----CNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 118 D----~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
. .+..+-.-++-++-++|||||.++...-
T Consensus 188 src~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 188 SRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ccccccchhcccceeehhhhhhccCceEEecCC
Confidence 3 2222223467778889999887766443
No 260
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.70 E-value=0.0041 Score=46.64 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=60.6
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-c-CCccEEEEcCCcCcHHHHH
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-F-READFVLIDCNLENHEGVL 128 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~-~~fD~VfiD~~~~~y~~~l 128 (211)
|+|..++.+|++. +.+|++++.+++..+.+++.-. ..-+.....|..+.+..+ . ..+|.||-.... ...+
T Consensus 1 ~vG~~a~q~ak~~---G~~vi~~~~~~~k~~~~~~~Ga--~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---~~~~ 72 (130)
T PF00107_consen 1 GVGLMAIQLAKAM---GAKVIATDRSEEKLELAKELGA--DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---GDTL 72 (130)
T ss_dssp HHHHHHHHHHHHT---TSEEEEEESSHHHHHHHHHTTE--SEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---HHHH
T ss_pred ChHHHHHHHHHHc---CCEEEEEECCHHHHHHHHhhcc--cccccccccccccccccccccccceEEEEecCc---HHHH
Confidence 5789999999886 5899999999999999987422 111111222344444444 2 379999866553 3678
Q ss_pred HHHHhcCCCCcEEEEEe
Q 041509 129 RAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 129 ~~~~~~L~pgG~viv~d 145 (211)
+.....|+|+|.++++-
T Consensus 73 ~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 73 QEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp HHHHHHEEEEEEEEEES
T ss_pred HHHHHHhccCCEEEEEE
Confidence 88888899988877754
No 261
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.69 E-value=0.0062 Score=55.83 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=49.8
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL 104 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~ 104 (211)
.|||| |||||..++..+++. +-.||++|.=..|.+.|++-.. |.+++|+++.-...|+
T Consensus 69 ~vLdi-gtGTGLLSmMAvrag---aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 69 FVLDI-GTGTGLLSMMAVRAG---ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEc-cCCccHHHHHHHHhc---CCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 47999 999999888777765 4579999999999999999987 7789999998877665
No 262
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.69 E-value=0.012 Score=50.84 Aligned_cols=94 Identities=12% Similarity=0.007 Sum_probs=64.8
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCC-
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCN- 120 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~- 120 (211)
+++|+| ||+|-.++.+..+- ...+.++|+++.+.+..+.|+... ++++|..++.... ...+|+++.+.+
T Consensus 2 ~v~dLF-sG~Gg~~~gl~~~G---~~~v~a~e~~~~a~~~~~~N~~~~-----~~~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLF-AGIGGFRLGLEKAG---FEIVAANEIDKSAAETYEANFPNK-----LIEGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEc-cCcchHHHHHHHcC---CEEEEEEeCCHHHHHHHHHhCCCC-----CccCccccCchhhcCCCCCEEEeCCCC
Confidence 589994 89998877776542 346899999999999999997631 5677777765432 467999998741
Q ss_pred ---------c-----C--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 121 ---------L-----E--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 121 ---------~-----~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+ + .+.++++.+.. ++| - +++.+|+-
T Consensus 73 q~fS~ag~~~~~~d~r~~L~~~~~~~i~~-~~P-~-~~v~ENV~ 113 (275)
T cd00315 73 QPFSIAGKRKGFEDTRGTLFFEIIRILKE-KKP-K-YFLLENVK 113 (275)
T ss_pred hhhhHHhhcCCCCCchHHHHHHHHHHHHh-cCC-C-EEEEEcCc
Confidence 1 1 13455554443 577 3 56669975
No 263
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.68 E-value=0.0075 Score=51.14 Aligned_cols=95 Identities=12% Similarity=0.147 Sum_probs=70.1
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC--
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC-- 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~-- 119 (211)
..+++| ||+.|+..-.|... .-++++-+|.+-.|++.++..-.+ .-.+...++|-. .|+.-++++|+|+..-
T Consensus 74 p~a~di-Gcs~G~v~rhl~~e---~vekli~~DtS~~M~~s~~~~qdp-~i~~~~~v~DEE-~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 74 PTAFDI-GCSLGAVKRHLRGE---GVEKLIMMDTSYDMIKSCRDAQDP-SIETSYFVGDEE-FLDFKENSVDLIISSLSL 147 (325)
T ss_pred cceeec-ccchhhhhHHHHhc---chhheeeeecchHHHHHhhccCCC-ceEEEEEecchh-cccccccchhhhhhhhhh
Confidence 468999 99999987776532 257899999999999888764331 223556677743 4454478999998653
Q ss_pred -CcCcHHHHHHHHHhcCCCCcEEE
Q 041509 120 -NLENHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 120 -~~~~y~~~l~~~~~~L~pgG~vi 142 (211)
+..+.+.+...|...|+|.|.++
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFI 171 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccch
Confidence 44567889999999999977554
No 264
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.63 E-value=0.0012 Score=57.56 Aligned_cols=102 Identities=17% Similarity=0.047 Sum_probs=69.4
Q ss_pred CCeEEEEccccHHHHHH-HHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 41 AQLMVVACANVANATTL-ALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl-~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
...|+|+ ..|+||+|+ ++..+ ....|+++|.||..++.-|++++ +..++-.++.||-...-+ ....|.|-+
T Consensus 195 ~eviVDL-YAGIGYFTlpflV~a---gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--~~~AdrVnL 268 (351)
T KOG1227|consen 195 GEVIVDL-YAGIGYFTLPFLVTA---GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--RLRADRVNL 268 (351)
T ss_pred cchhhhh-hcccceEEeehhhcc---CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--cccchheee
Confidence 3789999 899999999 67655 25799999999999999999998 445666777777765433 568899888
Q ss_pred cCCcCcHHHHHHHHHhcCCC-Cc-EEEEEecCCC
Q 041509 118 DCNLENHEGVLRAVQAGNKP-NG-AVVVGYNAFR 149 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~p-gG-~viv~dn~~~ 149 (211)
.--.+--..|...+ +.|+| || .+=|..|+-.
T Consensus 269 GLlPSse~~W~~A~-k~Lk~eggsilHIHenV~~ 301 (351)
T KOG1227|consen 269 GLLPSSEQGWPTAI-KALKPEGGSILHIHENVKD 301 (351)
T ss_pred ccccccccchHHHH-HHhhhcCCcEEEEeccccc
Confidence 75433222333322 23444 44 3444445544
No 265
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.61 E-value=0.0095 Score=52.23 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=59.3
Q ss_pred cCChhHHHHHHHHHhhc-----------CCcCCChhHHH-----HHHHHHhhCC-----CCeEEEEccccHHHHHHH--H
Q 041509 3 CWSAENATKAYLKTLKM-----------GQKAKEPNEAE-----FISALAAGNN-----AQLMVVACANVANATTLA--L 59 (211)
Q Consensus 3 ~~~~~~~~~ay~~~~~~-----------~~~~~~~~~~~-----lL~~l~~~~~-----~~~VLEi~Gtg~G~stl~--l 59 (211)
.|++..+..++-.++-. ..+.++|--++ +|.-+....+ .-++||| |||.- .++ |
T Consensus 44 dF~~~~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDI-GTGAs--cIYpLL 120 (299)
T PF05971_consen 44 DFSDPEAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDI-GTGAS--CIYPLL 120 (299)
T ss_dssp -TTSHHHHHHHHHHHHHHHH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEE-S-TTT--THHHHH
T ss_pred ecCCHHHHHHHHHHHHHHhcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecC-CccHH--HHHHHH
Confidence 46666666666555322 11234444343 2444444333 2368999 87654 454 3
Q ss_pred HHHccCCCcEEEEEeCChhHHHHHHHHhc---CCCCcEEEEEcchH-HHhhhc---cCCccEEEEcCCc
Q 041509 60 AAAAHQTGGRVVCILRRVEEYKLSKKILG---LDASHVEFVIGDAQ-SLLLSH---FREADFVLIDCNL 121 (211)
Q Consensus 60 a~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~~~~~V~~~~gda~-e~l~~l---~~~fD~VfiD~~~ 121 (211)
+... .+=++++.|+|+..++.|++|++ .+.++|+++..+.. .++..+ .+.|||.....+.
T Consensus 121 g~~~--~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 121 GAKL--YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp HHHH--H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE----
T ss_pred hhhh--cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEecCCcc
Confidence 3333 26799999999999999999998 46889999876433 232222 4689999976543
No 266
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.57 E-value=0.011 Score=49.15 Aligned_cols=146 Identities=12% Similarity=0.059 Sum_probs=91.1
Q ss_pred CCChhH---HHHHHHHHhhCCCC-eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--------CC
Q 041509 23 AKEPNE---AEFISALAAGNNAQ-LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--------LD 90 (211)
Q Consensus 23 ~~~~~~---~~lL~~l~~~~~~~-~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--------~~ 90 (211)
-++|+. .++.-...+..+.+ .+.|| |||.|-..+.|+...| +.-+.+.|+..+..+-.++.+. +.
T Consensus 39 PvsP~~mDWS~~yp~f~~~~~~kvefaDI-GCGyGGLlv~Lsp~fP--dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~ 115 (249)
T KOG3115|consen 39 PVSPQEMDWSKYYPDFRRALNKKVEFADI-GCGYGGLLMKLAPKFP--DTLILGMEIRDKVSDYVKERIQALRRTSAEGQ 115 (249)
T ss_pred CCChHhCcHHHhhhhhhhhccccceEEee-ccCccchhhhccccCc--cceeeeehhhHHHHHHHHHHHHHHhccccccc
Confidence 355553 34443343333322 37999 9999999999988775 6889999999888887777664 33
Q ss_pred CCcEEEEEcchHHHhhhcc--CCc--cEEEE-cCCcC--------cHHHHHHHHHhcCCCCcEEEEEecCCCCCcee---
Q 041509 91 ASHVEFVIGDAQSLLLSHF--REA--DFVLI-DCNLE--------NHEGVLRAVQAGNKPNGAVVVGYNAFRKGSWR--- 154 (211)
Q Consensus 91 ~~~V~~~~gda~e~l~~l~--~~f--D~Vfi-D~~~~--------~y~~~l~~~~~~L~pgG~viv~dn~~~~~~~~--- 154 (211)
..++.+...++...++++. +.. ||.+. |.... .-..++.+..=+|++||.++...++..-..|.
T Consensus 116 ~~ni~vlr~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~ 195 (249)
T KOG3115|consen 116 YPNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKH 195 (249)
T ss_pred cccceeeeccchhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHH
Confidence 5679999999999998762 233 33332 22110 11345555555688899888766644322332
Q ss_pred ---cCCCcEEEeecCCcEEE
Q 041509 155 ---SSGSKSQLLPIGEGLLV 171 (211)
Q Consensus 155 ---~~~~~~v~lpig~Gl~v 171 (211)
+|-|+....+.-++..+
T Consensus 196 ~e~hplfe~lt~ee~~~d~~ 215 (249)
T KOG3115|consen 196 LEEHPLFERLTEEEEENDPC 215 (249)
T ss_pred HHhCcHhhhcchhhhcCCcc
Confidence 45566555554444433
No 267
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.0032 Score=56.25 Aligned_cols=140 Identities=12% Similarity=0.013 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhcCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh
Q 041509 8 NATKAYLKTLKMGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL 87 (211)
Q Consensus 8 ~~~~ay~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~ 87 (211)
.+.+||+.+.-...+..-..+-.-|..-.....|+.|||+ |.|.|....++-.-.| .--.++-+|.+|..-++.-.-.
T Consensus 81 m~V~Ayias~lp~~Yasv~asL~~L~~~~~dfapqsiLDv-G~GPgtgl~A~n~i~P-dl~sa~ile~sp~lrkV~~tl~ 158 (484)
T COG5459 81 MAVKAYIASRLPQTYASVRASLDELQKRVPDFAPQSILDV-GAGPGTGLWALNDIWP-DLKSAVILEASPALRKVGDTLA 158 (484)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCcCcchhhcc-CCCCchhhhhhcccCC-CchhhhhhccCHHHHHHHHHHH
Confidence 4456777653322221111111222333445678999999 8888764333333333 2456788898887665544333
Q ss_pred c-CCCCcEEEEEcchHHHhhhc--cCCccEEEEc------CCcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 88 G-LDASHVEFVIGDAQSLLLSH--FREADFVLID------CNLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 88 ~-~~~~~V~~~~gda~e~l~~l--~~~fD~VfiD------~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
+ -...+.....+|..+-...+ .+.|+++++- ........+++.+..++.|||.+++++---.
T Consensus 159 ~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 159 ENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhcccccCCCCCCccchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 2 11233334444443221112 4567777653 2222345588888889999999998874433
No 268
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.0036 Score=57.93 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=87.3
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc-
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH- 108 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l- 108 (211)
+....+..++-+|||. =+++|.-++..|..++. -++|++-|.++..+...++|.+ +..+.|+..++||..++-..
T Consensus 101 ~~~~~~~~~~l~vLea-lsAtGlrslRya~El~~-v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~ 178 (525)
T KOG1253|consen 101 AALLKREEKSLRVLEA-LSATGLRSLRYAKELPG-VRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP 178 (525)
T ss_pred cchhhhccCcchHHHH-hhhhhHHHHHHHHHhcc-hhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcc
Confidence 3444556677889999 49999999999999864 7899999999999999999999 45678999999998877544
Q ss_pred --cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 109 --FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 109 --~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
...||+|=+|.--. -..+++.+.+.++.||.+.|.
T Consensus 179 ~~~~~FDvIDLDPyGs-~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 179 MVAKFFDVIDLDPYGS-PSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ccccccceEecCCCCC-ccHHHHHHHHHhhcCCEEEEE
Confidence 37899999996432 235777777777877766553
No 269
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.45 E-value=0.021 Score=48.77 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=67.8
Q ss_pred ChhHHHHHHHHHhhcCCc---CCChhHHHHHHHHHhhC-CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHH
Q 041509 5 SAENATKAYLKTLKMGQK---AKEPNEAEFISALAAGN-NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEY 80 (211)
Q Consensus 5 ~~~~~~~ay~~~~~~~~~---~~~~~~~~lL~~l~~~~-~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~ 80 (211)
.+..+..++++.+-..+. ---|..-+|+..+.... .|.+|+|| |||.--.|+...... ++.+++++|+|..++
T Consensus 66 ~D~e~~~~~~r~lL~~HaST~ERl~~Ld~fY~~if~~~~~p~sVlDi-gCGlNPlalp~~~~~--~~a~Y~a~DID~~~v 142 (251)
T PF07091_consen 66 GDPEAIRAWCRRLLAGHASTRERLPNLDEFYDEIFGRIPPPDSVLDI-GCGLNPLALPWMPEA--PGATYIAYDIDSQLV 142 (251)
T ss_dssp THHHHHHHHHHHHHHTSHHHHCCGGGHHHHHHHHCCCS---SEEEEE-T-TTCHHHHHTTTSS--TT-EEEEEESBHHHH
T ss_pred CCHHHHHHHHHHHHhhccchhhhhhhHHHHHHHHHhcCCCCchhhhh-hccCCceehhhcccC--CCcEEEEEeCCHHHH
Confidence 344445566554332221 11233445666665543 48999999 999999888655332 367999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 81 KLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 81 ~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+.....+.-+.-..++.+.|...-.+ .+..|+.++=
T Consensus 143 e~l~~~l~~l~~~~~~~v~Dl~~~~~--~~~~DlaLll 178 (251)
T PF07091_consen 143 EFLNAFLAVLGVPHDARVRDLLSDPP--KEPADLALLL 178 (251)
T ss_dssp HHHHHHHHHTT-CEEEEEE-TTTSHT--TSEESEEEEE
T ss_pred HHHHHHHHhhCCCcceeEeeeeccCC--CCCcchhhHH
Confidence 99999888333456666777765433 4678998863
No 270
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.40 E-value=0.0072 Score=54.42 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=76.9
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..++..++++ |||.|-...+++.-- ...+++++.++.-+.++..... .+.++-.++.+|...... -++.||++
T Consensus 108 ~~~~~~~~~~-~~g~~~~~~~i~~f~---~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f-edn~fd~v 182 (364)
T KOG1269|consen 108 CFPGSKVLDV-GTGVGGPSRYIAVFK---KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF-EDNTFDGV 182 (364)
T ss_pred Cccccccccc-CcCcCchhHHHHHhc---cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC-CccccCcE
Confidence 3556679999 999999999888652 5789999999988877776665 445555558888887644 37899998
Q ss_pred -EEcC--CcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 116 -LIDC--NLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 116 -fiD~--~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
|+|. ..+.....++++.+.++|||..++
T Consensus 183 ~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 183 RFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred EEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence 4564 345678899999999999776554
No 271
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.28 E-value=0.041 Score=48.72 Aligned_cols=102 Identities=21% Similarity=0.141 Sum_probs=70.2
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc-c-hH---HHhhhc-
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG-D-AQ---SLLLSH- 108 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g-d-a~---e~l~~l- 108 (211)
+..+...+||-+ |+| +|..|+..|+++. ..+|+.+|..+..++.||+ +. .+.+..... + +. +.+...
T Consensus 165 ~~vk~Gs~vLV~-GAGPIGl~t~l~Aka~G--A~~VVi~d~~~~Rle~Ak~-~G--a~~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 165 AGVKKGSKVLVL-GAGPIGLLTGLVAKAMG--ASDVVITDLVANRLELAKK-FG--ATVTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred cCcccCCeEEEE-CCcHHHHHHHHHHHHcC--CCcEEEeecCHHHHHHHHH-hC--CeEEeeccccccHHHHHHHHHhhc
Confidence 455678899999 877 6888999999985 5899999999999999999 54 112222222 1 22 222222
Q ss_pred -cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 109 -FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 109 -~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
...+|+.|-....+ ..++.....++++|.++++..
T Consensus 239 g~~~~d~~~dCsG~~---~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 239 GKKQPDVTFDCSGAE---VTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred cccCCCeEEEccCch---HHHHHHHHHhccCCEEEEecc
Confidence 24689998655543 456666777888999877663
No 272
>PRK11524 putative methyltransferase; Provisional
Probab=96.23 E-value=0.012 Score=50.88 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=42.9
Q ss_pred CcEEEEEcchHHHhhhc-cCCccEEEEcCCcC---------------cH----HHHHHHHHhcCCCCcEEEEEec
Q 041509 92 SHVEFVIGDAQSLLLSH-FREADFVLIDCNLE---------------NH----EGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 92 ~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~---------------~y----~~~l~~~~~~L~pgG~viv~dn 146 (211)
...++++||+.+.+..+ +++||+||+|.+-. +| .+++.++.++|+|+|.+++..+
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 45679999999988766 57999999997521 12 3678899999999999887543
No 273
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.15 E-value=0.013 Score=50.05 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=75.3
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhh--hccCCccE
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLL--SHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~--~l~~~fD~ 114 (211)
.+.+..+||=+ |.++|++-...+....+ .|-|++||.++..-...- |++....+|--+..||..--+ -+-+-.|+
T Consensus 153 hikpGsKVLYL-GAasGttVSHvSDiVGp-eG~VYAVEfs~rsGRdL~-nmAkkRtNiiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 153 HIKPGSKVLYL-GAASGTTVSHVSDIVGP-EGCVYAVEFSHRSGRDLI-NMAKKRTNIIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred eecCCceEEEe-eccCCceeehhhcccCC-CceEEEEEecccchHHHH-HHhhccCCceeeeccCCCchheeeeeeeEEE
Confidence 35678899999 99999998888887765 899999999986533222 222224667778888865322 12457899
Q ss_pred EEEcCCcCcHHHHHHHHHh-cCCCCcEEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQA-GNKPNGAVVVG 144 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~-~L~pgG~viv~ 144 (211)
||.|-+.++..+.+..-.+ .|++||-+++.
T Consensus 230 IFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 230 IFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 9999988877666654444 38998888775
No 274
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=96.14 E-value=0.0067 Score=46.44 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=36.0
Q ss_pred cEEEEEcchHHHhhhccCCccEEEEcCCc--Cc----HHHHHHHHHhcCCCCcEE
Q 041509 93 HVEFVIGDAQSLLLSHFREADFVLIDCNL--EN----HEGVLRAVQAGNKPNGAV 141 (211)
Q Consensus 93 ~V~~~~gda~e~l~~l~~~fD~VfiD~~~--~~----y~~~l~~~~~~L~pgG~v 141 (211)
++++..||+.+.++++...+|.||+|+-. .+ -.++++.+.++++|||.+
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l 86 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTL 86 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEE
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEE
Confidence 47889999999999888999999999722 12 278999999999986544
No 275
>PRK13699 putative methylase; Provisional
Probab=96.13 E-value=0.011 Score=49.74 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=39.9
Q ss_pred EEEEEcchHHHhhhc-cCCccEEEEcCCc--------------Cc----HHHHHHHHHhcCCCCcEEEEE
Q 041509 94 VEFVIGDAQSLLLSH-FREADFVLIDCNL--------------EN----HEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 94 V~~~~gda~e~l~~l-~~~fD~VfiD~~~--------------~~----y~~~l~~~~~~L~pgG~viv~ 144 (211)
.++++||+.+.++.+ ++++|+||.|.+- .. +.++++++.+.|+|||.+++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 478999999999877 6899999999532 11 246778889999998877664
No 276
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.12 E-value=0.084 Score=47.27 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=68.7
Q ss_pred HhhCCCCeEEEEccccH-HHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcc-hHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACANVA-NATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGD-AQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~-G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd-a~e~l~~l--~~~ 111 (211)
....+.++||.. |+|. |..++.+|++.+ .+++++++.+++..+.+++... ...+.....+ ..+.+..+ ...
T Consensus 180 ~~~~~g~~VlV~-g~G~vG~~~~~la~~~g--~~~vi~~~~~~~~~~~~~~~~~--~~vi~~~~~~~~~~~l~~~~~~~~ 254 (386)
T cd08283 180 AEVKPGDTVAVW-GCGPVGLFAARSAKLLG--AERVIAIDRVPERLEMARSHLG--AETINFEEVDDVVEALRELTGGRG 254 (386)
T ss_pred ccCCCCCEEEEE-CCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHcCC--cEEEcCCcchHHHHHHHHHcCCCC
Confidence 444567889999 8877 999999998863 2479999999999999987532 1222222332 33333322 236
Q ss_pred ccEEEEcCCc------------------CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNL------------------ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~------------------~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+||--... .+....++.+.+.|+|+|.++...
T Consensus 255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 9987643211 112456788888899999887764
No 277
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.09 E-value=0.06 Score=46.62 Aligned_cols=97 Identities=20% Similarity=0.109 Sum_probs=70.3
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH----------------------------hc---
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI----------------------------LG--- 88 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~----------------------------~~--- 88 (211)
+..+||-= |||.|-.+..+|.. +-.+.+.|.+--|+-..+-- ++
T Consensus 56 ~~~~VLVP-GsGLGRLa~Eia~~----G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~ 130 (270)
T PF07942_consen 56 SKIRVLVP-GSGLGRLAWEIAKL----GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVR 130 (270)
T ss_pred CccEEEEc-CCCcchHHHHHhhc----cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceE
Confidence 35689999 99999999989864 67899999999886432211 11
Q ss_pred -C---------CCCcEEEEEcchHHHhhhc--cCCccEE----EEcCCcCcHHHHHHHHHhcCCCCcEEE
Q 041509 89 -L---------DASHVEFVIGDAQSLLLSH--FREADFV----LIDCNLENHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 89 -~---------~~~~V~~~~gda~e~l~~l--~~~fD~V----fiD~~~~~y~~~l~~~~~~L~pgG~vi 142 (211)
. ...+..+..||..++-... .+.||.| |||.. ++..+|++.|..+|+|||..|
T Consensus 131 iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA-~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 131 IPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA-ENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred eCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech-HHHHHHHHHHHHHhccCCEEE
Confidence 0 1235677788887775532 3689998 56774 368899999999999988444
No 278
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.0057 Score=49.15 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=67.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CC---CCcE---EEEEcchHHHhhhccCC
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LD---ASHV---EFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~---~~~V---~~~~gda~e~l~~l~~~ 111 (211)
..+++|||++|..+|.+++.+|..++ ...|.-.|-|++.++-.++-.. +. .++. ++..-.+... ....+
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~--~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq--~eq~t 103 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAP--DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQ--QEQHT 103 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecC--CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHH--HhhCc
Confidence 34578999955668888888887764 6889999999998877765443 11 1222 2222222221 12569
Q ss_pred ccEEEE-cCC--cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 112 ADFVLI-DCN--LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~Vfi-D~~--~~~y~~~l~~~~~~L~pgG~viv 143 (211)
||+|+. |+- .+..+...+.+..+|+|.|.-++
T Consensus 104 FDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 104 FDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred ccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 999985 443 23457788999999999998665
No 279
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.88 E-value=0.11 Score=45.69 Aligned_cols=99 Identities=11% Similarity=0.065 Sum_probs=60.4
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+.++||-+++.++|..++.+|+++. ..+|++++.+++..+.|++ +. ...-+.....+..+... ..+.+|+||-.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G--~~~Vi~~~~~~~~~~~a~~-lG-a~~vi~~~~~~~~~~~~-~~g~~D~vid~ 242 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLG--AAEIVCADVSPRSLSLARE-MG-ADKLVNPQNDDLDHYKA-EKGYFDVSFEV 242 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEEeCCHHHHHHHHH-cC-CcEEecCCcccHHHHhc-cCCCCCEEEEC
Confidence 35678887822457777777887752 2479999999999998876 32 11111111223333322 23469988744
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.... ..++.+.+.|+++|.++..-
T Consensus 243 ~G~~---~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 243 SGHP---SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred CCCH---HHHHHHHHHhhcCCEEEEEc
Confidence 3322 35666777788999877654
No 280
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.87 E-value=0.27 Score=41.81 Aligned_cols=116 Identities=15% Similarity=0.054 Sum_probs=61.7
Q ss_pred CCcCCChhHH--HHHHHHHhh-CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcE
Q 041509 20 GQKAKEPNEA--EFISALAAG-NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHV 94 (211)
Q Consensus 20 ~~~~~~~~~~--~lL~~l~~~-~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V 94 (211)
.|-.+++++. +.+...-+. ..+++||=+ |=.--. ++++|.. ....+|+-+|+|+..++..++..+ ++. |
T Consensus 21 DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~l-GDDDLt-SlA~al~--~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i 94 (243)
T PF01861_consen 21 DQGYATPETTLRRAALMAERGDLEGKRILFL-GDDDLT-SLALALT--GLPKRITVVDIDERLLDFINRVAEEEGLP--I 94 (243)
T ss_dssp T---B-HHHHHHHHHHHHHTT-STT-EEEEE-S-TT-H-HHHHHHH--T--SEEEEE-S-HHHHHHHHHHHHHHT----E
T ss_pred ccccccHHHHHHHHHHHHhcCcccCCEEEEE-cCCcHH-HHHHHhh--CCCCeEEEEEcCHHHHHHHHHHHHHcCCc--e
Confidence 3445667664 222122221 357899999 844333 3545433 235899999999999999998887 543 9
Q ss_pred EEEEcchHHHhhh-ccCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEE
Q 041509 95 EFVIGDAQSLLLS-HFREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAV 141 (211)
Q Consensus 95 ~~~~gda~e~l~~-l~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~v 141 (211)
+.++.|..+-||. +.++||.+|.|.+-. ...-++......|+..|..
T Consensus 95 ~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~ 144 (243)
T PF01861_consen 95 EAVHYDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCA 144 (243)
T ss_dssp EEE---TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-E
T ss_pred EEEEecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCce
Confidence 9999999998875 378999999998643 3455666667777766643
No 281
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.81 E-value=0.026 Score=46.72 Aligned_cols=118 Identities=17% Similarity=0.066 Sum_probs=72.5
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhH----HHHHHHHhc---CCCCcEEEEEcch
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEE----YKLSKKILG---LDASHVEFVIGDA 101 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~----~~~Ar~~~~---~~~~~V~~~~gda 101 (211)
++.|.+ +...+...|+|+ -.|.||.|-.++.++.+ .|.|+++-.++.. .+..+.+.. ....+++.+-++.
T Consensus 38 ~E~L~F-aGlkpg~tVid~-~PGgGy~TrI~s~~vgp-~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~ 114 (238)
T COG4798 38 GEVLAF-AGLKPGATVIDL-IPGGGYFTRIFSPAVGP-KGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPL 114 (238)
T ss_pred cceeEE-eccCCCCEEEEE-ecCCccHhhhhchhcCC-ceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcc
Confidence 444443 356678889999 79999999999999976 6799998766541 111111111 1223444443333
Q ss_pred HHHhhhccCCccEEEEc--------CCc-C-cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 102 QSLLLSHFREADFVLID--------CNL-E-NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 102 ~e~l~~l~~~fD~VfiD--------~~~-~-~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.... .....|+++.. -+. . .-...+..+++.|+|||.++|.|..-.+|
T Consensus 115 ~A~~--~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG 172 (238)
T COG4798 115 VALG--APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPG 172 (238)
T ss_pred cccC--CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCC
Confidence 2221 12344555431 111 2 23668888999999999999988776665
No 282
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=95.75 E-value=0.18 Score=44.59 Aligned_cols=100 Identities=20% Similarity=0.132 Sum_probs=64.6
Q ss_pred HhhCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc-chHHHhhhc-cCC
Q 041509 36 AAGNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG-DAQSLLLSH-FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g-da~e~l~~l-~~~ 111 (211)
+...+.++||-. |+ ++|..++.+|++. +.+|++++.+++..+.+++.+. ...-+..... +..+.+..+ .+.
T Consensus 154 ~~~~~g~~VlV~-GaaG~vG~~aiqlAk~~---G~~Vi~~~~~~~k~~~~~~~lG-a~~vi~~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 154 CSPKKGDSVFVS-AASGAVGQLVGQLAKLH---GCYVVGSAGSSQKVDLLKNKLG-FDEAFNYKEEPDLDAALKRYFPEG 228 (348)
T ss_pred cCCCCCCEEEEe-cCccHHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHHhcC-CCEEEECCCcccHHHHHHHHCCCC
Confidence 345567888888 64 6888888888875 6789999999988887764443 1111221112 343433332 346
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|++| |+--. ..++.+.+.|+++|.++++
T Consensus 229 vD~v~-d~vG~---~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 229 IDIYF-DNVGG---DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred cEEEE-ECCCH---HHHHHHHHHhccCCEEEEE
Confidence 89887 54332 4667778888999988764
No 283
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=95.68 E-value=0.19 Score=43.14 Aligned_cols=101 Identities=15% Similarity=0.077 Sum_probs=64.9
Q ss_pred HHhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCC
Q 041509 35 LAAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FRE 111 (211)
Q Consensus 35 l~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~ 111 (211)
.....++++||-. | .+.|..++.+|++. +.+|+++..+++..+.+++ +. ...-+.....+..+.+..+ .+.
T Consensus 138 ~~~~~~g~~vlI~-ga~g~vG~~aiqlA~~~---G~~vi~~~~s~~~~~~l~~-~G-a~~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 138 ICKPKAGETVVVN-GAAGAVGSLVGQIAKIK---GCKVIGCAGSDDKVAWLKE-LG-FDAVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred hcCCCCCCEEEEe-cCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-cC-CCEEEeCCCccHHHHHHHHCCCC
Confidence 3445567788877 5 67888888888875 5689999999998888876 32 2111222222333333322 356
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+|| |+--. ..++...+.|+++|.++...
T Consensus 212 vd~vl-d~~g~---~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 212 IDCYF-DNVGG---EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred cEEEE-ECCCH---HHHHHHHHhhccCCEEEEEc
Confidence 99887 54332 45677788888999887643
No 284
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.59 E-value=0.17 Score=43.48 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=61.5
Q ss_pred hCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEE
Q 041509 38 GNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~V 115 (211)
..+..+||.. |+| +|..++.+|... +.+|++++.+++..+.+++. . ....+.....+..+.+... ...+|++
T Consensus 163 ~~~~~~vli~-g~g~vG~~~~~la~~~---G~~V~~~~~s~~~~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 163 VKPGETVLVI-GLGGLGLNAVQIAKAM---GAAVIAVDIKEEKLELAKEL-G-ADEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHHh-C-CCEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 4556788888 765 688888888875 57899999999988888652 2 2111111111222222111 4579976
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+ |+... ...++.+.+.|+++|.++...
T Consensus 237 i-d~~g~--~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 237 F-DFVGT--QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred E-ECCCC--HHHHHHHHHHhhcCCEEEEEC
Confidence 5 43211 246777788888999887653
No 285
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.59 E-value=0.24 Score=42.80 Aligned_cols=109 Identities=12% Similarity=0.149 Sum_probs=65.7
Q ss_pred HhhCCCCeEEEEccccHHH--HHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcC-CCCcEEEEEcchHHH---hh--h
Q 041509 36 AAGNNAQLMVVACANVANA--TTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGL-DASHVEFVIGDAQSL---LL--S 107 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~--stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~-~~~~V~~~~gda~e~---l~--~ 107 (211)
+....-+..||| |||.=. .+-..|++..+ +.+|+-+|.||-.+..+|..+.+ ...+..++.+|..+. |. .
T Consensus 64 a~~~GIrQFLDl-GsGlPT~~nvHevAq~~~P-~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~ 141 (267)
T PF04672_consen 64 AEEAGIRQFLDL-GSGLPTAGNVHEVAQRVAP-DARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPE 141 (267)
T ss_dssp HCTT---EEEEE-T--S--SS-HHHHHHHH-T-T-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHH
T ss_pred HHhcCcceEEEc-ccCCCCCCCHhHHHHhhCC-CceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHH
Confidence 333356789999 988643 24557777654 89999999999999999998883 234699999997653 32 1
Q ss_pred c------cCCccEEEEcC-----CcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 108 H------FREADFVLIDC-----NLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 108 l------~~~fD~VfiD~-----~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
. ..++-++++.- +.++-...++.+.+.|.||..+++.+-
T Consensus 142 ~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp HHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred HHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 1 34555565542 334668899999999999777777553
No 286
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.53 E-value=0.076 Score=45.40 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=60.3
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-------CCCCc---EEEEEcchHHHhhhcc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-------LDASH---VEFVIGDAQSLLLSHF 109 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-------~~~~~---V~~~~gda~e~l~~l~ 109 (211)
++++|||+ |+|||.-++..|... ...+..-|...-.... +.|.. .+... ..+..|++.+.... .
T Consensus 86 ~~~~vlEL-GsGtglvG~~aa~~~---~~~v~ltD~~~~~~~L-~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~-~ 159 (248)
T KOG2793|consen 86 KYINVLEL-GSGTGLVGILAALLL---GAEVVLTDLPKVVENL-KFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR-L 159 (248)
T ss_pred cceeEEEe-cCCccHHHHHHHHHh---cceeccCCchhhHHHH-HHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc-c
Confidence 57789999 999998888777654 4566666654433332 22221 22222 34456777665433 3
Q ss_pred CC-ccEEEE-cC--CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 110 RE-ADFVLI-DC--NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~-fD~Vfi-D~--~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.. +|+|+. |. ..+.+......+..+|..++.+++..
T Consensus 160 ~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 160 PNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred CCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 34 899885 32 33456777777777777677555544
No 287
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.52 E-value=0.087 Score=38.71 Aligned_cols=108 Identities=21% Similarity=0.244 Sum_probs=65.1
Q ss_pred ccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEcCCcCcHH
Q 041509 50 NVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLIDCNLENHE 125 (211)
Q Consensus 50 tg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD~~~~~y~ 125 (211)
||.|..+..+++.+.+ .+ .|+.+|.+++..+.+++. .+.++.||+.+ .+.+. -.+.|.+++..+.....
T Consensus 4 ~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELREE------GVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp ES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHT------TSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred EcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhc------ccccccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 4667888999999987 66 899999999998887653 26799999865 34443 45899999887655333
Q ss_pred HHHHHHHhcCCCCcEEEEEec-CCCCCceecCCCcEEEee
Q 041509 126 GVLRAVQAGNKPNGAVVVGYN-AFRKGSWRSSGSKSQLLP 164 (211)
Q Consensus 126 ~~l~~~~~~L~pgG~viv~dn-~~~~~~~~~~~~~~v~lp 164 (211)
-..-...+.+.|...+++.-+ .-....+...+.+.++.|
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred HHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 233333333445455544221 101112334555665554
No 288
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.50 E-value=0.035 Score=47.67 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=63.2
Q ss_pred CCCCeEEEEccccHHHHHHH-HHHHccCCCcEEEEEeCChhHHHHHHHHhcCCC--------------------------
Q 041509 39 NNAQLMVVACANVANATTLA-LAAAAHQTGGRVVCILRRVEEYKLSKKILGLDA-------------------------- 91 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~-la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~-------------------------- 91 (211)
.+++++||| |||.- ++ +..+.+ .--+|+..|..+...+..++.+++-.
T Consensus 55 ~~g~~llDi-GsGPt---iy~~lsa~~-~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~ 129 (256)
T PF01234_consen 55 VKGETLLDI-GSGPT---IYQLLSACE-WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEE 129 (256)
T ss_dssp S-EEEEEEE-S-TT-----GGGTTGGG-TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHH
T ss_pred cCCCEEEEe-CCCcH---HHhhhhHHH-hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHH
Confidence 356789999 99863 33 333333 35789999999999987777665100
Q ss_pred ---CcEE-EEEcchHHHhh--h---ccCCccEEEEc-------CCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 92 ---SHVE-FVIGDAQSLLL--S---HFREADFVLID-------CNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 92 ---~~V~-~~~gda~e~l~--~---l~~~fD~VfiD-------~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..|+ ++..|..+--+ . +..+||.|+.- .+.+.|...++.+.++|+|||-++++.
T Consensus 130 ~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 130 KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0122 44444433211 1 12349998764 255689999999999999988887754
No 289
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.44 E-value=0.17 Score=43.73 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=71.8
Q ss_pred HHHHHHHHHhh--cCCcCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHH
Q 041509 8 NATKAYLKTLK--MGQKAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKK 85 (211)
Q Consensus 8 ~~~~ay~~~~~--~~~~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~ 85 (211)
.+.+.|.+... ..+....| .-.++..+-...+...|-|+ |||-+-. |+.- .-.|+++|.-+
T Consensus 147 ~afdlYH~gfr~QV~kWP~nP-ld~ii~~ik~r~~~~vIaD~-GCGEaki----A~~~---~~kV~SfDL~a-------- 209 (325)
T KOG3045|consen 147 TAFDLYHAGFRSQVKKWPENP-LDVIIRKIKRRPKNIVIADF-GCGEAKI----ASSE---RHKVHSFDLVA-------- 209 (325)
T ss_pred HHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHhCcCceEEEec-ccchhhh----hhcc---ccceeeeeeec--------
Confidence 45566666533 22223333 23344444333334457899 9998864 3222 35799998743
Q ss_pred HhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC--CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 86 ILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC--NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 86 ~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~--~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
-+=+++..|...+ |-.+++.|+++... ...+..++++++.+.|+|||.++|+.
T Consensus 210 ------~~~~V~~cDm~~v-Pl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 210 ------VNERVIACDMRNV-PLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred ------CCCceeeccccCC-cCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEe
Confidence 1223455666653 42378999998664 34588999999999999999999987
No 290
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=95.40 E-value=0.27 Score=42.72 Aligned_cols=94 Identities=20% Similarity=0.187 Sum_probs=60.2
Q ss_pred CeEEEEcc--ccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEE
Q 041509 42 QLMVVACA--NVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLI 117 (211)
Q Consensus 42 ~~VLEi~G--tg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~Vfi 117 (211)
++||-. | .+.|..++.+|++. +. +|++++.+++..+.+++.+. ...-+.....+..+.+..+ .+.+|+||
T Consensus 156 ~~VlI~-ga~g~vG~~aiqlAk~~---G~~~Vi~~~~s~~~~~~~~~~lG-a~~vi~~~~~~~~~~i~~~~~~gvd~vi- 229 (345)
T cd08293 156 QTMVVS-GAAGACGSLAGQIGRLL---GCSRVVGICGSDEKCQLLKSELG-FDAAINYKTDNVAERLRELCPEGVDVYF- 229 (345)
T ss_pred CEEEEE-CCCcHHHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHHhcC-CcEEEECCCCCHHHHHHHHCCCCceEEE-
Confidence 688887 5 57888888888875 55 79999999988888776443 2111221122333333333 35799887
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+-.. ..++.+.+.|+++|.++..
T Consensus 230 d~~g~---~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 DNVGG---EISDTVISQMNENSHIILC 253 (345)
T ss_pred ECCCc---HHHHHHHHHhccCCEEEEE
Confidence 54433 2356777888999988764
No 291
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=95.40 E-value=0.33 Score=42.01 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=63.3
Q ss_pred HHhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cchHHHhhhc-cC
Q 041509 35 LAAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GDAQSLLLSH-FR 110 (211)
Q Consensus 35 l~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l-~~ 110 (211)
.+...+.++||=. | .++|..++.+|++. +.+|++++.+++..+.+++ +. ...-+.... .+..+.+... .+
T Consensus 133 ~~~~~~g~~VLI~-ga~g~vG~~aiqlAk~~---G~~Vi~~~~s~~~~~~~~~-lG-a~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 133 ICGVKGGETVMVN-AAAGAVGSVVGQIAKLK---GCKVVGAAGSDEKVAYLKK-LG-FDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred HhCCCCCCEEEEe-CCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-cC-CCEEEeccccccHHHHHHHhCCC
Confidence 3445667888888 6 56888888888775 6689999999988888864 32 211122111 1233333322 34
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.+|+|| |+--. ..++.+.+.|+++|.++..
T Consensus 207 gvdvv~-d~~G~---~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 207 GYDCYF-DNVGG---EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CeEEEE-ECCCH---HHHHHHHHHhCcCcEEEEe
Confidence 699887 54432 3457778888999988764
No 292
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=95.33 E-value=0.34 Score=43.81 Aligned_cols=102 Identities=10% Similarity=0.060 Sum_probs=62.9
Q ss_pred CCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC----CCcEEEEE----cchHHHhhhc
Q 041509 39 NNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD----ASHVEFVI----GDAQSLLLSH 108 (211)
Q Consensus 39 ~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~----~~~V~~~~----gda~e~l~~l 108 (211)
.+.++||-+ | .+.|..++.+|++......+|+++|.+++..+.|++.+... .....++. .+..+.+..+
T Consensus 174 ~~g~~VlV~-G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 174 KPGGNTAIL-GGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCEEEEE-eCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence 445778877 5 56888888888775321248999999999999998864310 01112222 2333333332
Q ss_pred --cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 109 --FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 109 --~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
...+|.||..... ...++...+.++++|.+++.
T Consensus 253 t~g~g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 253 TGGQGFDDVFVFVPV---PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred hCCCCCCEEEEcCCC---HHHHHHHHHHhccCCeEEEE
Confidence 3469988875433 24566677778877876553
No 293
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.26 E-value=0.019 Score=51.68 Aligned_cols=95 Identities=21% Similarity=0.276 Sum_probs=72.9
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcch
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDA 101 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda 101 (211)
+++..--=+.++++...++..|+|+| |..|..|..+|.-++. .|+++++|.+++.++.-++.++ .....++..+||+
T Consensus 196 ilqd~asclpA~ll~p~~g~~v~d~c-aapg~KTsH~a~i~~n-~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df 273 (413)
T KOG2360|consen 196 ILQDKASCLPAHLLDPRPGSRVIDTC-AAPGNKTSHLAAIMRN-QGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDF 273 (413)
T ss_pred EEechhhcchhhhcCCCCCCceeeec-cccccchhhHHHHhhc-cCCcchhhhhhHHHHHHHHHHHHcCCCccccccccc
Confidence 34443334666777788889999997 9999999999988864 8999999999999998888887 3356688889999
Q ss_pred HHHh-hhccCCccEEEEcC
Q 041509 102 QSLL-LSHFREADFVLIDC 119 (211)
Q Consensus 102 ~e~l-~~l~~~fD~VfiD~ 119 (211)
..+. +......-.|++|.
T Consensus 274 ~~t~~~~~~~~v~~iL~Dp 292 (413)
T KOG2360|consen 274 LNTATPEKFRDVTYILVDP 292 (413)
T ss_pred cCCCCcccccceeEEEeCC
Confidence 8751 22234567778774
No 294
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.14 E-value=0.22 Score=46.83 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=62.8
Q ss_pred hCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEE--E-------------Ecch
Q 041509 38 GNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEF--V-------------IGDA 101 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~--~-------------~gda 101 (211)
..++.+|+-+ |+| .|..++..|.++ +.+|+.+|.+++..+.|++ +. .+.+.+ - ..+.
T Consensus 162 ~~pg~kVlVi-GaG~iGL~Ai~~Ak~l---GA~V~a~D~~~~rle~aes-lG--A~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 162 KVPPAKVLVI-GAGVAGLAAIGAAGSL---GAIVRAFDTRPEVAEQVES-MG--AEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred CcCCCEEEEE-CCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHH-cC--CeEEEeccccccccccchhhhcchhH
Confidence 3578999999 776 588888888876 5689999999999999987 33 111111 1 1111
Q ss_pred HHH----hhhccCCccEEEEcCCcCc--HHHH-HHHHHhcCCCCcEEE
Q 041509 102 QSL----LLSHFREADFVLIDCNLEN--HEGV-LRAVQAGNKPNGAVV 142 (211)
Q Consensus 102 ~e~----l~~l~~~fD~VfiD~~~~~--y~~~-l~~~~~~L~pgG~vi 142 (211)
.+. +.+..+.+|+|+-.+..+. -... .++..+.++|||.++
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIV 282 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIV 282 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEE
Confidence 111 1111246999987765432 1234 488888899977654
No 295
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=95.11 E-value=0.47 Score=41.32 Aligned_cols=100 Identities=20% Similarity=0.125 Sum_probs=64.7
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc-chHHHhhhc-cCC
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG-DAQSLLLSH-FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g-da~e~l~~l-~~~ 111 (211)
+...++++||-. | .+.|..++.+|++. +.+|+++..+++..+.+++.+. ...-+..-.. +..+.+..+ .+.
T Consensus 147 ~~~~~g~~VlI~-Ga~G~vG~~aiqlAk~~---G~~Vi~~~~~~~~~~~~~~~lG-a~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 147 CKPKKGETVFVS-AASGAVGQLVGQLAKLK---GCYVVGSAGSDEKVDLLKNKLG-FDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred cCCCCCCEEEEe-cCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHhcC-CceeEEcCCcccHHHHHHHhCCCC
Confidence 445667889888 6 47788888888875 6789999999988888876443 1111221111 333333322 357
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|+|| |+-.. ..++.+.+.|+++|.++..
T Consensus 222 vd~v~-d~~g~---~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 222 IDIYF-DNVGG---KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred cEEEE-ECCCH---HHHHHHHHHhccCcEEEEe
Confidence 99887 54332 4567778888899988764
No 296
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=95.10 E-value=0.37 Score=42.62 Aligned_cols=103 Identities=20% Similarity=0.177 Sum_probs=67.0
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-c-CC
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-F-RE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~-~~ 111 (211)
....+.+.||-. | .|.|..++-||+++ +++++.+-.+++..+.+++. +...-|.+...|..+.+.++ . ..
T Consensus 138 ~~l~~g~~VLV~-gaaGgVG~~aiQlAk~~---G~~~v~~~~s~~k~~~~~~l--GAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 138 AGLKPGETVLVH-GAAGGVGSAAIQLAKAL---GATVVAVVSSSEKLELLKEL--GADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred cCCCCCCEEEEe-cCCchHHHHHHHHHHHc---CCcEEEEecCHHHHHHHHhc--CCCEEEcCCcccHHHHHHHHcCCCC
Confidence 445667899998 5 67788888899886 43666666666655555543 22334566677777666555 3 36
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+|+|| |.--. +.+......|+++|.++.+-+.-
T Consensus 212 vDvv~-D~vG~---~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 212 VDVVL-DTVGG---DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred ceEEE-ECCCH---HHHHHHHHHhccCCEEEEEecCC
Confidence 99997 33322 44555666677889888766543
No 297
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.06 E-value=0.28 Score=43.54 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=59.8
Q ss_pred hCCCCeEEEEcc-ccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccE
Q 041509 38 GNNAQLMVVACA-NVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADF 114 (211)
Q Consensus 38 ~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~ 114 (211)
..+.++||-. | .++|..++.+|++. +. +|++++.+++..+.|++. +...-+.....+..+.+..+ .+.+|+
T Consensus 189 i~~g~~VlV~-G~G~vG~~a~~lak~~---G~~~Vi~~~~~~~r~~~a~~~--Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 189 VRPGQSVAVV-GLGGVGLSALLGAVAA---GASQVVAVDLNEDKLALAREL--GATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCcEEEEcCCHHHHHHHHHc--CCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 4456788778 5 35566667777764 44 799999999999888653 21111221122333333322 347998
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
||-.... ...++.+.+.|+++|.++...
T Consensus 263 vid~~G~---~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 263 AFEMAGS---VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEECCCC---hHHHHHHHHHHhcCCEEEEEc
Confidence 8733322 245666677788899887654
No 298
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.97 E-value=0.13 Score=44.29 Aligned_cols=93 Identities=17% Similarity=0.072 Sum_probs=62.7
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCC-
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCN- 120 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~- 120 (211)
+++|+| ||+|-+++.+-.+- --.+.++|+++.+.+.-+.|+. ....+|..++-... .+.+|+++-..+
T Consensus 2 ~~~dlF-sG~Gg~~~g~~~ag---~~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~~l~~~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLF-SGIGGFSLGLEQAG---FEVVWAVEIDPDACETYKANFP------EVICGDITEIDPSDLPKDVDLLIGGPPC 71 (335)
T ss_dssp EEEEET--TTTHHHHHHHHTT---EEEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHHHHHHT-SEEEEE---
T ss_pred cEEEEc-cCccHHHHHHHhcC---cEEEEEeecCHHHHHhhhhccc------ccccccccccccccccccceEEEeccCC
Confidence 589996 99998888777652 2478999999999999998876 78899988765432 226999886521
Q ss_pred --------------cC--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 121 --------------LE--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 121 --------------~~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+ .+.++++.+.. ++| . +++.+|+-
T Consensus 72 Q~fS~ag~~~~~~d~r~~L~~~~~~~v~~-~~P-k-~~~~ENV~ 112 (335)
T PF00145_consen 72 QGFSIAGKRKGFDDPRNSLFFEFLRIVKE-LKP-K-YFLLENVP 112 (335)
T ss_dssp TTTSTTSTHHCCCCHTTSHHHHHHHHHHH-HS--S-EEEEEEEG
T ss_pred ceEeccccccccccccchhhHHHHHHHhh-ccc-e-EEEecccc
Confidence 11 24566666654 577 3 45569974
No 299
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=94.94 E-value=0.17 Score=43.18 Aligned_cols=119 Identities=19% Similarity=0.159 Sum_probs=66.6
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS 103 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e 103 (211)
..+.....+..+...+.... +.. ..|+=.. .+..+++ .-+++.+|..|+-.+.-++++.+ ..+|+++.+|+.+
T Consensus 42 ~p~~l~~yl~~v~~~n~~~~-l~~-YPGSP~i---a~~llR~-qDrl~l~ELHp~d~~~L~~~~~~-~~~v~v~~~DG~~ 114 (245)
T PF04378_consen 42 LPPALQPYLDAVRALNPDGE-LRF-YPGSPAI---AARLLRE-QDRLVLFELHPQDFEALKKNFRR-DRRVRVHHRDGYE 114 (245)
T ss_dssp S-GGGHHHHHHHHHHSSSSS---E-EE-HHHH---HHHHS-T-TSEEEEE--SHHHHHHHTTS--T-TS-EEEE-S-HHH
T ss_pred chHHHHHHHHHHHHhccCCC-cCc-CCCCHHH---HHHhCCc-cceEEEEecCchHHHHHHHHhcc-CCccEEEeCchhh
Confidence 44455566666655443332 566 5654443 3334444 78999999999999988888874 4689999999999
Q ss_pred HhhhccC---CccEEEEcCC---cCcHHHHHHHHHhcCC--CCcEEEEEecCCC
Q 041509 104 LLLSHFR---EADFVLIDCN---LENHEGVLRAVQAGNK--PNGAVVVGYNAFR 149 (211)
Q Consensus 104 ~l~~l~~---~fD~VfiD~~---~~~y~~~l~~~~~~L~--pgG~viv~dn~~~ 149 (211)
.+..+-. +=-+|+||.. +.+|.+..+.+...++ |.|++++=.-++.
T Consensus 115 ~l~allPP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~ 168 (245)
T PF04378_consen 115 GLKALLPPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKD 168 (245)
T ss_dssp HHHHH-S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESS
T ss_pred hhhhhCCCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeeccc
Confidence 8766533 3459999984 4578666665544332 4687776555444
No 300
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.93 E-value=0.086 Score=42.79 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=30.9
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHH
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKK 85 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~ 85 (211)
..+...|||-+ +|+|.+ +..|..+ +-+.+++|++++.+++|++
T Consensus 189 t~~gdiVlDpF-~GSGTT-~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPF-AGSGTT-AVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT--TTTHH-HHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhh-hccChH-HHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 35678899996 999965 4444444 6689999999999999975
No 301
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.91 E-value=0.023 Score=46.24 Aligned_cols=95 Identities=21% Similarity=0.166 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC--------------CCcEEEEEcchHHHhhhccCCccEEE
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD--------------ASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~--------------~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
|.||.++.+|..+...+-+|+++|+|++.++..++-.... ..+..+ ..|..+.+. ..|++|
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~ai~----~adv~~ 81 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEAIK----DADVVF 81 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHHHH----H-SEEE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhhhh----ccceEE
Confidence 4677777777777666779999999999887765432110 122222 233333332 478888
Q ss_pred EcCCc----------CcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 117 IDCNL----------ENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 117 iD~~~----------~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+.-+. .......+.+.+.+++ |.++|......+|
T Consensus 82 I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~-~~lvV~~STvppG 125 (185)
T PF03721_consen 82 ICVPTPSDEDGSPDLSYVESAIESIAPVLRP-GDLVVIESTVPPG 125 (185)
T ss_dssp E----EBETTTSBETHHHHHHHHHHHHHHCS-CEEEEESSSSSTT
T ss_pred EecCCCccccCCccHHHHHHHHHHHHHHHhh-cceEEEccEEEEe
Confidence 86321 1246778888888887 7788878888887
No 302
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.84 E-value=0.76 Score=39.11 Aligned_cols=96 Identities=22% Similarity=0.143 Sum_probs=58.1
Q ss_pred CCCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccE
Q 041509 39 NNAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~ 114 (211)
.+.++||-+ |+ +.|..++.+|++. +. +|+.++.+++..+.|++. . ...-+. ..+..+.+..+ ...+|+
T Consensus 119 ~~g~~VlV~-G~G~vG~~~~~~ak~~---G~~~Vi~~~~~~~r~~~a~~~-G-a~~~i~--~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 119 LKGRRVLVV-GAGMLGLTAAAAAAAA---GAARVVAADPSPDRRELALSF-G-ATALAE--PEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHc-C-CcEecC--chhhHHHHHHHhCCCCCCE
Confidence 456788888 54 5677777777765 44 499999999988888763 2 111111 11112222222 346998
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|--.... ..++.+.+.|+|+|.+++.-
T Consensus 191 vid~~G~~---~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALEFSGAT---AAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEECCCCh---HHHHHHHHHhcCCCEEEEec
Confidence 87433222 45667778888999887654
No 303
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.80 E-value=0.66 Score=38.12 Aligned_cols=98 Identities=22% Similarity=0.187 Sum_probs=60.4
Q ss_pred CCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh-ccCCccEEE
Q 041509 39 NNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS-HFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~-l~~~fD~Vf 116 (211)
.+.++||-. |+| +|..++.++.+. +.+|+.++.+++..+.+++.-. ...+.....+..+.+.. ..+.+|+++
T Consensus 133 ~~~~~vli~-g~~~~G~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 133 KPGDTVLVL-GAGGVGLLAAQLAKAA---GARVIVTDRSDEKLELAKELGA--DHVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHc---CCeEEEEcCCHHHHHHHHHhCC--ceeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 567789998 766 577777777764 6799999999988877765311 11111111222221111 146899998
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
-..... ...+.+.+.|+++|.++...
T Consensus 207 ~~~~~~---~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 207 DAVGGP---ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred ECCCCH---HHHHHHHHhcccCCEEEEEc
Confidence 544431 34566667778888877654
No 304
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.64 E-value=0.16 Score=36.12 Aligned_cols=82 Identities=24% Similarity=0.248 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHccCCC---cEEEEE-eCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHH
Q 041509 51 VANATTLALAAAAHQTG---GRVVCI-LRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEG 126 (211)
Q Consensus 51 g~G~stl~la~a~~~~~---g~v~ti-E~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~ 126 (211)
|+|-.+..|+..+-..+ .+|+-+ +.+++..+...+.+. +.+...+..+.+. ..|+||+......+.+
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~~~~----~advvilav~p~~~~~ 76 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-----VQATADDNEEAAQ----EADVVILAVKPQQLPE 76 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-----TEEESEEHHHHHH----HTSEEEE-S-GGGHHH
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-----cccccCChHHhhc----cCCEEEEEECHHHHHH
Confidence 45666666666665545 689844 999998877765543 3444456666655 4799999999999999
Q ss_pred HHHHHHhcCCCCcEEEE
Q 041509 127 VLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 127 ~l~~~~~~L~pgG~viv 143 (211)
.++.+ +.+.+ +.++|
T Consensus 77 v~~~i-~~~~~-~~~vi 91 (96)
T PF03807_consen 77 VLSEI-PHLLK-GKLVI 91 (96)
T ss_dssp HHHHH-HHHHT-TSEEE
T ss_pred HHHHH-hhccC-CCEEE
Confidence 99998 54555 44554
No 305
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.57 E-value=0.27 Score=40.61 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=58.9
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc-chHHH------hhhc-cC
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG-DAQSL------LLSH-FR 110 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g-da~e~------l~~l-~~ 110 (211)
.+..+|||+ |+..|..+--.-+... +.|.|.+||+-+ +.. ..-++++.| |..+. ...+ +.
T Consensus 68 ~p~~~VlD~-G~APGsWsQVavqr~~-p~g~v~gVDllh---------~~p-~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDC-GAAPGSWSQVAVQRVN-PNGMVLGVDLLH---------IEP-PEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEc-cCCCChHHHHHHHhhC-CCceEEEEeeee---------ccC-CCCcccccccccCCHHHHHHHHHhCCCC
Confidence 467899999 9999998777776664 489999999842 221 233556666 43221 1222 46
Q ss_pred CccEEEEcCCcC-------cHHHHHH-------HHHhcCCCCcEEEE
Q 041509 111 EADFVLIDCNLE-------NHEGVLR-------AVQAGNKPNGAVVV 143 (211)
Q Consensus 111 ~fD~VfiD~~~~-------~y~~~l~-------~~~~~L~pgG~viv 143 (211)
+.|.|+.|-... ++....+ .....+.|+|.+++
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvc 182 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVC 182 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEE
Confidence 899999995321 2333333 33455789887654
No 306
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.51 E-value=0.45 Score=41.87 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=58.3
Q ss_pred CCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeC---ChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccE
Q 041509 39 NNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILR---RVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~---~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
.+.++||-+ |+ ++|..++.+|++. +.+|+.++. +++..+.|++. . .+.+.....+..+ .. ..+.+|+
T Consensus 171 ~~g~~vlI~-G~G~vG~~a~q~ak~~---G~~vi~~~~~~~~~~~~~~~~~~-G--a~~v~~~~~~~~~-~~-~~~~~d~ 241 (355)
T cd08230 171 WNPRRALVL-GAGPIGLLAALLLRLR---GFEVYVLNRRDPPDPKADIVEEL-G--ATYVNSSKTPVAE-VK-LVGEFDL 241 (355)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHc-C--CEEecCCccchhh-hh-hcCCCCE
Confidence 356788888 54 4577777777775 558999987 67777777642 2 1112111122222 11 2357998
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
||--.... ..+....+.|+++|.++++-
T Consensus 242 vid~~g~~---~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 242 IIEATGVP---PLAFEALPALAPNGVVILFG 269 (355)
T ss_pred EEECcCCH---HHHHHHHHHccCCcEEEEEe
Confidence 87544432 35677788889999877644
No 307
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.38 E-value=0.12 Score=39.83 Aligned_cols=97 Identities=20% Similarity=0.088 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHH-Hhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHH
Q 041509 52 ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKK-ILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVL 128 (211)
Q Consensus 52 ~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~-~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l 128 (211)
.|..+..+|..+...+-+|+.+...+ .++.-++ -+. .......+.............++||+||+...-.+..+.+
T Consensus 6 ~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~~~~~l 84 (151)
T PF02558_consen 6 AGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQLEQAL 84 (151)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGGHHHHH
T ss_pred cCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccchHHHH
Confidence 34455566655544467899999988 4444332 222 1111111111111111111257999999987766788899
Q ss_pred HHHHhcCCCCcEEEEEecCCC
Q 041509 129 RAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 129 ~~~~~~L~pgG~viv~dn~~~ 149 (211)
+.+.+.+.|+..+++..|-+.
T Consensus 85 ~~l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 85 QSLKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp HHHCTGEETTEEEEEESSSSS
T ss_pred HHHhhccCCCcEEEEEeCCCC
Confidence 999999998767888788665
No 308
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.26 E-value=0.64 Score=40.96 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=60.9
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+.++||-. |+ ++|..++.+|++. +. +|++++.+++..+.+++. +...-+.....+..+.+..+ ...+
T Consensus 173 ~~~~g~~VlV~-G~g~vG~~a~~~ak~~---G~~~Vi~~~~~~~~~~~~~~~--Ga~~~i~~~~~~~~~~i~~~~~~~g~ 246 (358)
T TIGR03451 173 GVKRGDSVAVI-GCGGVGDAAIAGAALA---GASKIIAVDIDDRKLEWAREF--GATHTVNSSGTDPVEAIRALTGGFGA 246 (358)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHHc--CCceEEcCCCcCHHHHHHHHhCCCCC
Confidence 34567888888 54 4566677777765 44 599999999999888652 22111222223333333333 2368
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+|| |+.-. ...++...+.++++|.+++.-
T Consensus 247 d~vi-d~~g~--~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 247 DVVI-DAVGR--PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CEEE-ECCCC--HHHHHHHHHHhccCCEEEEEC
Confidence 9876 54322 234566677788899887654
No 309
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.21 E-value=0.25 Score=45.19 Aligned_cols=100 Identities=17% Similarity=0.107 Sum_probs=59.5
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh-----------ccC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS-----------HFR 110 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~-----------l~~ 110 (211)
++|.=| | .||.+..+|..+...+-+|+++|.+++.++..+.. .+.+...+..+.+.+ ..+
T Consensus 4 ~kI~VI-G--lG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g------~~~~~e~~l~~~l~~~~~~g~l~~~~~~~ 74 (415)
T PRK11064 4 ETISVI-G--LGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRG------EIHIVEPDLDMVVKTAVEGGYLRATTTPE 74 (415)
T ss_pred cEEEEE-C--cchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCC------CCCcCCCCHHHHHHHHhhcCceeeecccc
Confidence 456666 5 46666777776655578999999999987753211 111111122222110 012
Q ss_pred CccEEEEcCCcC----------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 111 EADFVLIDCNLE----------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 111 ~fD~VfiD~~~~----------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
..|+||+.-+.+ ......+.+.+.+++ |.++|......++
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~-g~iVI~~STv~pg 124 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKK-GDLVILESTSPVG 124 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCC-CCEEEEeCCCCCC
Confidence 579999876542 335567778888887 6777756566666
No 310
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.18 E-value=0.8 Score=41.01 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=65.0
Q ss_pred hhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc----chHHHhhhc-cC
Q 041509 37 AGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG----DAQSLLLSH-FR 110 (211)
Q Consensus 37 ~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g----da~e~l~~l-~~ 110 (211)
+..+...|.-+ | .|.|.+++.-|.... .+++++||++++..+.|++.=. ..+++. |..+.+..+ ++
T Consensus 182 ~v~~G~tvaV~-GlGgVGlaaI~gA~~ag--A~~IiAvD~~~~Kl~~A~~fGA-----T~~vn~~~~~~vv~~i~~~T~g 253 (366)
T COG1062 182 KVEPGDTVAVF-GLGGVGLAAIQGAKAAG--AGRIIAVDINPEKLELAKKFGA-----THFVNPKEVDDVVEAIVELTDG 253 (366)
T ss_pred cCCCCCeEEEE-eccHhHHHHHHHHHHcC--CceEEEEeCCHHHHHHHHhcCC-----ceeecchhhhhHHHHHHHhcCC
Confidence 45667778777 5 468999888887764 6899999999999999987532 223322 565665555 44
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
..|.+|--.... +.+++.+..++++|..++.
T Consensus 254 G~d~~~e~~G~~---~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 254 GADYAFECVGNV---EVMRQALEATHRGGTSVII 284 (366)
T ss_pred CCCEEEEccCCH---HHHHHHHHHHhcCCeEEEE
Confidence 889987443322 2455555555567876664
No 311
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=94.01 E-value=1.2 Score=39.16 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=59.0
Q ss_pred hCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEc---chHHHhhhc--cCC
Q 041509 38 GNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIG---DAQSLLLSH--FRE 111 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g---da~e~l~~l--~~~ 111 (211)
..+.++||-. |+| .|..++.+|++. +.+|+.++.+++..+.|++ +. ....+..... +..+.+..+ ...
T Consensus 164 ~~~g~~VlV~-G~G~vG~~a~~~a~~~---G~~vi~~~~~~~~~~~~~~-~G-a~~~i~~~~~~~~~~~~~~~~~t~~~g 237 (349)
T TIGR03201 164 LKKGDLVIVI-GAGGVGGYMVQTAKAM---GAAVVAIDIDPEKLEMMKG-FG-ADLTLNPKDKSAREVKKLIKAFAKARG 237 (349)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHc---CCeEEEEcCCHHHHHHHHH-hC-CceEecCccccHHHHHHHHHhhcccCC
Confidence 4557789888 653 477777777775 5689999999999888865 32 2111221111 222222222 234
Q ss_pred ccE---EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADF---VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~---VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|. +++|+.-. ...++.+.+.|+++|.+++.-
T Consensus 238 ~d~~~d~v~d~~g~--~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 238 LRSTGWKIFECSGS--KPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCcCEEEECCCC--hHHHHHHHHHHhcCCeEEEEC
Confidence 552 45565432 235566667778899887654
No 312
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.99 E-value=0.94 Score=41.22 Aligned_cols=97 Identities=16% Similarity=0.117 Sum_probs=61.8
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~Vfi 117 (211)
.++|+=+ |+ |..+..+++.+...+..|+.+|.+++..+.+++.. ..+.++.||+.+ .|.+. -..+|.|++
T Consensus 231 ~~~iiIi-G~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 231 VKRVMIV-GG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----PNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCEEEEE-CC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----CCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 4667777 65 77777888888766789999999999888776643 246789999854 34332 357899987
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
-.+.....-....+.+.+.+.-.++.+
T Consensus 304 ~~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 304 LTNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CCCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 654432222223333444443333333
No 313
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=93.90 E-value=0.093 Score=40.48 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=26.7
Q ss_pred EEccccHH--HHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH
Q 041509 46 VACANVAN--ATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI 86 (211)
Q Consensus 46 Ei~Gtg~G--~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~ 86 (211)
|| |+..| .++.+++.+....+++|+++|.+|...+..+++
T Consensus 1 Dv-GA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DV-GANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EE-S-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred Cc-ccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 78 99999 777776533223479999999999999988888
No 314
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.87 E-value=1.1 Score=38.90 Aligned_cols=99 Identities=18% Similarity=0.133 Sum_probs=58.0
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+.++||-+ |+ +.|..++.+|++. +.+ |+.++.+++..+.+++. . ...-+.....+ .+.+..+ ...+
T Consensus 160 ~~~~g~~vlV~-G~G~vG~~~~~~ak~~---G~~~vi~~~~~~~~~~~~~~~-g-a~~~i~~~~~~-~~~~~~~~~~~~~ 232 (339)
T cd08239 160 GVSGRDTVLVV-GAGPVGLGALMLARAL---GAEDVIGVDPSPERLELAKAL-G-ADFVINSGQDD-VQEIRELTSGAGA 232 (339)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHh-C-CCEEEcCCcch-HHHHHHHhCCCCC
Confidence 34567788888 54 5666666677665 456 99999999988888653 2 11112221222 2222222 2379
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+||-..... ..++...+.|+++|.+++.-
T Consensus 233 d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 233 DVAIECSGNT---AARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CEEEECCCCH---HHHHHHHHHhhcCCEEEEEc
Confidence 9887433322 33455566778889887643
No 315
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.77 E-value=0.97 Score=39.69 Aligned_cols=93 Identities=12% Similarity=0.118 Sum_probs=57.0
Q ss_pred CCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.+.++||-+ |+ ++|..++.+++.+. .+.+|+.+|.+++..+.|++ +.. ...+ + +. .. ...+|+||
T Consensus 162 ~~g~~VlV~-G~G~vGl~~~~~a~~~~-g~~~vi~~~~~~~k~~~a~~-~~~----~~~~--~--~~-~~-~~g~d~vi- 227 (341)
T cd08237 162 KDRNVIGVW-GDGNLGYITALLLKQIY-PESKLVVFGKHQEKLDLFSF-ADE----TYLI--D--DI-PE-DLAVDHAF- 227 (341)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHhc-CCCcEEEEeCcHhHHHHHhh-cCc----eeeh--h--hh-hh-ccCCcEEE-
Confidence 457889888 64 45555555565421 14589999999998888875 221 1111 1 11 11 22589887
Q ss_pred cCCcC-cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DCNLE-NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~~~~-~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+.-. .....++...++|+++|.+++.-
T Consensus 228 D~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 228 ECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 44322 23456788888999999887654
No 316
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=93.75 E-value=1.1 Score=39.23 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=60.3
Q ss_pred hCCCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccE
Q 041509 38 GNNAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADF 114 (211)
Q Consensus 38 ~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~ 114 (211)
..+.++||-. |+ +.|..++.+|++. +. .|++++.+++..+.+++ +. ...-+.....+..++.... ...+|-
T Consensus 158 ~~~g~~vlV~-G~g~vG~~~~~~a~~~---G~~~v~~~~~~~~~~~~~~~-~G-a~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 158 GCEGKNVIII-GAGTIGLLAIQCAVAL---GAKSVTAIDINSEKLALAKS-LG-AMQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEECCCHHHHHHHHH-cC-CceEecCcccCHHHHHHHhcCCCCCe
Confidence 3456788888 54 4666667777765 44 47999999998888764 22 1111111112222222212 346886
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+++|+.-. ...+....+.|+++|.+++.-
T Consensus 232 ~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 232 LILETAGV--PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred EEEECCCC--HHHHHHHHHHhhcCCEEEEEc
Confidence 77776543 245677777888999887753
No 317
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.74 E-value=0.45 Score=41.84 Aligned_cols=93 Identities=15% Similarity=0.063 Sum_probs=61.0
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCC---
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCN--- 120 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~--- 120 (211)
|+|++ ||.|-.++-+-.+- --.+.++|+++...+..+.|+.. .++++|..++.......+|+++-..+
T Consensus 1 vidLF-~G~GG~~~Gl~~aG---~~~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~~~~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLF-AGIGGIRLGFEQAG---FKCVFASEIDKYAQKTYEANFGN-----KVPFGDITKISPSDIPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEe-cCccHHHHHHHHcC---CeEEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence 58895 88888877776542 23467899999999999988752 44578887765432346898875421
Q ss_pred ------------cC--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 121 ------------LE--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 121 ------------~~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+ .+.++++.+. .++| . +++.+|+-
T Consensus 72 fS~ag~~~~~~d~r~~L~~~~~r~i~-~~~P-~-~~v~ENV~ 110 (315)
T TIGR00675 72 FSIAGKRKGFEDTRGTLFFEIVRILK-EKKP-K-FFLLENVK 110 (315)
T ss_pred cchhcccCCCCCchhhHHHHHHHHHh-hcCC-C-EEEeeccH
Confidence 11 1344555554 3677 3 66679974
No 318
>PRK11524 putative methyltransferase; Provisional
Probab=93.66 E-value=0.21 Score=43.27 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=42.0
Q ss_pred HHHHHHHHhh--CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc
Q 041509 29 AEFISALAAG--NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 29 ~~lL~~l~~~--~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
-+|+..++.. .+++.|||-+ +|+|.+++ .|..+ +-+.+++|++++..+.|++.+.
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF-~GSGTT~~-AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPF-AGSFTTGA-VAKAS---GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECC-CCCcHHHH-HHHHc---CCCEEEEeCCHHHHHHHHHHHH
Confidence 3556665543 5688999996 99996544 44443 6789999999999999999986
No 319
>PRK10867 signal recognition particle protein; Provisional
Probab=93.52 E-value=0.56 Score=43.28 Aligned_cols=104 Identities=18% Similarity=0.156 Sum_probs=59.4
Q ss_pred CCeEEEEcc-ccHHHHHHH--HHHHccCC-CcEEEEEeCChhHH---HHHHHHhcCCCCcEEEEE----cchHHHhhh--
Q 041509 41 AQLMVVACA-NVANATTLA--LAAAAHQT-GGRVVCILRRVEEY---KLSKKILGLDASHVEFVI----GDAQSLLLS-- 107 (211)
Q Consensus 41 ~~~VLEi~G-tg~G~stl~--la~a~~~~-~g~v~tiE~~~~~~---~~Ar~~~~~~~~~V~~~~----gda~e~l~~-- 107 (211)
|..|+=+ | +|+|-+|.. ||..+... +.+|.-|+.|.... +..+.+.+ ...|.++. .|+.++...
T Consensus 100 p~vI~~v-G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~--~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 100 PTVIMMV-GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGE--QIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHh--hcCCeEEecCCCCCHHHHHHHHH
Confidence 4455555 5 889988755 55544443 45676666664332 22222222 12244332 255444321
Q ss_pred ---ccCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 108 ---HFREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 108 ---l~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
....||+|++|.+.+ ...+.+..+.+.+.|...++|+|..
T Consensus 177 ~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~ 224 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAM 224 (433)
T ss_pred HHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecc
Confidence 145799999998754 2344556666777898888887753
No 320
>PLN02827 Alcohol dehydrogenase-like
Probab=93.42 E-value=1.3 Score=39.67 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=58.5
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEE--cchHHHhhhc-cCC
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVI--GDAQSLLLSH-FRE 111 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~--gda~e~l~~l-~~~ 111 (211)
...+.++||-. |+ +.|..++.+|++. +. .|++++.+++..+.|++. +...-+.... .+..+.+.++ .+.
T Consensus 190 ~~~~g~~VlV~-G~G~vG~~~iqlak~~---G~~~vi~~~~~~~~~~~a~~l--Ga~~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 190 DVSKGSSVVIF-GLGTVGLSVAQGAKLR---GASQIIGVDINPEKAEKAKTF--GVTDFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEECCCHHHHHHHHHc--CCcEEEcccccchHHHHHHHHHhCCC
Confidence 34567888888 54 5666667777765 44 689999999988888652 2211122111 1333333333 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~ 144 (211)
+|+||=-.... ..+..+.+.++++ |.+++.
T Consensus 264 ~d~vid~~G~~---~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 264 ADYSFECVGDT---GIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCEEEECCCCh---HHHHHHHHhhccCCCEEEEE
Confidence 99887333321 3456667777887 777653
No 321
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.40 E-value=1.9 Score=37.70 Aligned_cols=92 Identities=14% Similarity=0.082 Sum_probs=57.4
Q ss_pred hhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 37 AGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 37 ~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
...+.++||-. | .+.|..++.+|++. +.+|++++.+++..+.|++. . . +.+ +. ..+. ..+.+|.+
T Consensus 162 ~~~~g~~VlV~-G~g~iG~~a~~~a~~~---G~~vi~~~~~~~~~~~a~~~-G-a-~~v--i~--~~~~---~~~~~d~~ 227 (329)
T TIGR02822 162 SLPPGGRLGLY-GFGGSAHLTAQVALAQ---GATVHVMTRGAAARRLALAL-G-A-ASA--GG--AYDT---PPEPLDAA 227 (329)
T ss_pred CCCCCCEEEEE-cCCHHHHHHHHHHHHC---CCeEEEEeCChHHHHHHHHh-C-C-cee--cc--cccc---CcccceEE
Confidence 34567788888 6 44666666667664 56899999999988888763 2 1 111 11 0010 12458876
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+...... ..++...+.|+++|.+++.-
T Consensus 228 i~~~~~~---~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 228 ILFAPAG---GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EECCCcH---HHHHHHHHhhCCCcEEEEEe
Confidence 6433222 46777888899999887754
No 322
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.31 E-value=2 Score=37.54 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=60.8
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
+...+.++||-. |+ ++|..++.+|++.. ...+++++.+++..+.+++ +. ...-+.....+..+.+..+ ...+
T Consensus 162 ~~~~~g~~vlI~-g~g~iG~~~~~lak~~G--~~~v~~~~~~~~~~~~~~~-~g-~~~~v~~~~~~~~~~i~~~~~~~~~ 236 (351)
T cd08285 162 ANIKLGDTVAVF-GIGPVGLMAVAGARLRG--AGRIIAVGSRPNRVELAKE-YG-ATDIVDYKNGDVVEQILKLTGGKGV 236 (351)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH-cC-CceEecCCCCCHHHHHHHHhCCCCC
Confidence 334567788888 54 47777777887752 2469999999988888875 22 2111222122322222222 3479
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|+++-..... ..+..+.+.|+++|.++..
T Consensus 237 d~vld~~g~~---~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 237 DAVIIAGGGQ---DTFEQALKVLKPGGTISNV 265 (351)
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCEEEEe
Confidence 9887433322 4567777778888887654
No 323
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.30 E-value=0.25 Score=41.99 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=59.8
Q ss_pred CCeEEEEccccHHHHHHHHHHHccC---CCc----EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH------HHhhh
Q 041509 41 AQLMVVACANVANATTLALAAAAHQ---TGG----RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ------SLLLS 107 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~---~~g----~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~------e~l~~ 107 (211)
.++++|+| ...|..+-.|++.+-. +.+ +|++||+.|- .. -.-|.-+.||+. .++.-
T Consensus 42 v~rvVDLC-AAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M---------aP-I~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLC-AAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM---------AP-IEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhh-cCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC---------Cc-cCceEEeecccCCHhHHHHHHHH
Confidence 57899997 9999999999988754 122 3999998762 21 234666677643 33433
Q ss_pred c-cCCccEEEEcCCcC--------cH------HHHHHHHHhcCCCCcEEE
Q 041509 108 H-FREADFVLIDCNLE--------NH------EGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 108 l-~~~fD~VfiD~~~~--------~y------~~~l~~~~~~L~pgG~vi 142 (211)
+ .++.|+|+.|+... +| ...+......|+|||.++
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 3 45899999998643 23 223333345599988765
No 324
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.27 E-value=2.2 Score=36.02 Aligned_cols=97 Identities=22% Similarity=0.162 Sum_probs=62.2
Q ss_pred hCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 38 GNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 38 ~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
..+++.||-. | +++|..++.+|++. +.+|+++..+++..+.+++ + +. +.+-....+..+.+..+...+|++
T Consensus 140 ~~~g~~vlV~-ga~g~~g~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~-g~-~~~~~~~~~~~~~i~~~~~~~d~v 212 (320)
T cd08243 140 LQPGDTLLIR-GGTSSVGLAALKLAKAL---GATVTATTRSPERAALLKE-L-GA-DEVVIDDGAIAEQLRAAPGGFDKV 212 (320)
T ss_pred CCCCCEEEEE-cCCChHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHh-c-CC-cEEEecCccHHHHHHHhCCCceEE
Confidence 4566788877 6 57888888888875 6789999999888777753 2 22 222111223333333334579988
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+ |+... ..++.+.+.|+++|.++.+.
T Consensus 213 l-~~~~~---~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 213 L-ELVGT---ATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred E-ECCCh---HHHHHHHHHhccCCEEEEEc
Confidence 7 54332 35677778888889877654
No 325
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=93.22 E-value=1.6 Score=38.09 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=60.9
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-c-CCcc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-F-READ 113 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~-~~fD 113 (211)
...++++||=..+.++|..++.+|++. +. +|+.++.+++..+.+++. +...-+.....+..+.+.++ . +.+|
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~---G~~~v~~~~~~~~~~~~~~~~--ga~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAA---GASKIIVSEPSEARRELAEEL--GATIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHh--CCCEEECCCccCHHHHHHHHhCCCCCC
Confidence 345567787772245677777777765 44 899999999988888653 22111222233333333322 2 3599
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+++--.... ..++.+.+.|+++|.++.+-
T Consensus 244 ~vid~~g~~---~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 244 VSFDCAGVQ---ATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred EEEECCCCH---HHHHHHHHhccCCCEEEEEc
Confidence 987543322 35677777888888877644
No 326
>PLN02740 Alcohol dehydrogenase-like
Probab=93.12 E-value=1.5 Score=39.04 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=59.1
Q ss_pred HhhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEE--cchHHHhhhc-cC
Q 041509 36 AAGNNAQLMVVACA-NVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVI--GDAQSLLLSH-FR 110 (211)
Q Consensus 36 ~~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~--gda~e~l~~l-~~ 110 (211)
+...+.++||-+ | .+.|..++.+|++. +. +|++++.+++..+.|++. +....+.... .+..+.+..+ .+
T Consensus 194 ~~~~~g~~VlV~-G~G~vG~~a~q~ak~~---G~~~Vi~~~~~~~r~~~a~~~--Ga~~~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 194 ANVQAGSSVAIF-GLGAVGLAVAEGARAR---GASKIIGVDINPEKFEKGKEM--GITDFINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHC---CCCcEEEEcCChHHHHHHHHc--CCcEEEecccccchHHHHHHHHhCC
Confidence 345567788888 5 44666666777764 45 799999999999988652 2211122111 1233333333 23
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEEe
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~d 145 (211)
.+|+||=-.... ..++.....++++ |.+++.-
T Consensus 268 g~dvvid~~G~~---~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 268 GVDYSFECAGNV---EVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCEEEECCCCh---HHHHHHHHhhhcCCCEEEEEc
Confidence 799876433322 3455666667776 7766543
No 327
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.10 E-value=0.38 Score=40.78 Aligned_cols=47 Identities=9% Similarity=-0.135 Sum_probs=38.8
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCC------CcEEEEEeCChhHHHHHHHHhc
Q 041509 41 AQLMVVACANVANATTLALAAAAHQT------GGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~------~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
+-+|+|+ |.|.|..+.-+...+... .-+++-||.+|.+.+..++.+.
T Consensus 19 ~~~ivE~-GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEI-GAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEE-S-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEE-CCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 3579999 999999999999988753 2489999999999999999987
No 328
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=93.07 E-value=2.2 Score=36.81 Aligned_cols=87 Identities=21% Similarity=0.095 Sum_probs=52.4
Q ss_pred ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccEEEEcCCcCcHHHH
Q 041509 50 NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADFVLIDCNLENHEGV 127 (211)
Q Consensus 50 tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~VfiD~~~~~y~~~ 127 (211)
.++|..++.+|++. +.+|++++.+++..+.+++. +...-+.....+..+.+.++ ...+|++| |+--. ..
T Consensus 154 g~vG~~a~q~a~~~---G~~vi~~~~~~~~~~~~~~~--g~~~~i~~~~~~~~~~v~~~~~~~~~d~vi-d~~g~---~~ 224 (324)
T cd08291 154 SALGRMLVRLCKAD---GIKVINIVRRKEQVDLLKKI--GAEYVLNSSDPDFLEDLKELIAKLNATIFF-DAVGG---GL 224 (324)
T ss_pred cHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHc--CCcEEEECCCccHHHHHHHHhCCCCCcEEE-ECCCc---HH
Confidence 66777777788775 67899999999988888762 21111222222333333322 24689887 54322 22
Q ss_pred HHHHHhcCCCCcEEEEEe
Q 041509 128 LRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 128 l~~~~~~L~pgG~viv~d 145 (211)
.....+.|+++|.++.+-
T Consensus 225 ~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 225 TGQILLAMPYGSTLYVYG 242 (324)
T ss_pred HHHHHHhhCCCCEEEEEE
Confidence 344566678889877653
No 329
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=92.94 E-value=1.7 Score=37.58 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=60.1
Q ss_pred hhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCcc
Q 041509 37 AGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREAD 113 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD 113 (211)
...+.++||-. |+| +|..++.+|++.. ..++++++.+++..+.+++. +....+.....+..+.+..+ .+.+|
T Consensus 164 ~~~~~~~VlI~-g~g~vg~~~iqlak~~g--~~~v~~~~~~~~~~~~~~~~--g~~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 164 GIKPGSTVAVI-GAGPVGLCAVAGARLLG--AARIIAVDSNPERLDLAKEA--GATDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHh--CCcEEEcCCcchHHHHHHHHcCCCCCc
Confidence 34556788777 554 6888888888752 24899999888887777653 11111222222333333322 35799
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
++| |+... ...++...+.|+++|.++.+
T Consensus 239 ~vl-d~~g~--~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVI-EAVGF--EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEE-EccCC--HHHHHHHHHHhhcCCEEEEE
Confidence 887 44322 13566777778888887654
No 330
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.91 E-value=1.3 Score=39.95 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=58.5
Q ss_pred CCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 40 NAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 40 ~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
++.+|+-+ |+| +|..++..+.++ +.+|+.+|.+++..+.+...+. ..+.....+..++ ...-..+|+|+..
T Consensus 166 ~~~~VlVi-GaG~vG~~aa~~a~~l---Ga~V~v~d~~~~~~~~l~~~~g---~~v~~~~~~~~~l-~~~l~~aDvVI~a 237 (370)
T TIGR00518 166 EPGDVTII-GGGVVGTNAAKMANGL---GATVTILDINIDRLRQLDAEFG---GRIHTRYSNAYEI-EDAVKRADLLIGA 237 (370)
T ss_pred CCceEEEE-cCCHHHHHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcC---ceeEeccCCHHHH-HHHHccCCEEEEc
Confidence 56779999 776 666666666655 5689999999987766655443 1232222232222 2223578999976
Q ss_pred CC---cCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 119 CN---LENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 119 ~~---~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.. .....=..+.....++|++ +++ |-...+|
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~-vIv-Dva~d~G 271 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGA-VIV-DVAIDQG 271 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCC-EEE-EEecCCC
Confidence 41 1111112244555678754 444 6455544
No 331
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=92.79 E-value=2.7 Score=36.36 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=63.2
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
....+.++||-. |+| .|..++.+|++. +.+|+++..+++..+.+++. . ...-+.....+..+.+.++ ...+
T Consensus 155 ~~l~~g~~vLI~-g~g~vG~~a~~lA~~~---g~~v~~~~~s~~~~~~~~~~-g-~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 155 AGVTAGDTVLVV-GAGPIGLGVIQVAKAR---GARVIVVDIDDERLEFAREL-G-ADDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCeEEEECCCHHHHHHHHHh-C-CCEEecCcccCHHHHHHHHhCCCCC
Confidence 344567789988 665 588888888875 67899999888888877542 2 1122222233333333322 3469
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|++|-.... ...+..+.+.|+++|.++...
T Consensus 229 d~vld~~g~---~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 229 DVVIDATGN---PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CEEEECCCC---HHHHHHHHHHHhcCCEEEEEc
Confidence 999754322 234666677778888877543
No 332
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=92.74 E-value=2.3 Score=37.67 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=59.2
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEE--cchHHHhhhc-cCC
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVI--GDAQSLLLSH-FRE 111 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~--gda~e~l~~l-~~~ 111 (211)
...+.++||-. |+ ++|..++.+|++. +. +|++++.+++..+.|++. . ...-+.... .+..+.+.++ .+.
T Consensus 182 ~~~~g~~VlV~-G~G~iG~~a~q~Ak~~---G~~~Vi~~~~~~~~~~~a~~~-G-a~~~i~~~~~~~~~~~~v~~~~~~g 255 (368)
T TIGR02818 182 KVEEGDTVAVF-GLGGIGLSVIQGARMA---KASRIIAIDINPAKFELAKKL-G-ATDCVNPNDYDKPIQEVIVEITDGG 255 (368)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHHh-C-CCeEEcccccchhHHHHHHHHhCCC
Confidence 34567888888 54 5677777777765 45 799999999998888653 2 111122111 1122323222 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~d 145 (211)
+|++|-.... ...+..+.+.++++ |.+++.-
T Consensus 256 ~d~vid~~G~---~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 256 VDYSFECIGN---VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCEEEECCCC---HHHHHHHHHHhhcCCCeEEEEe
Confidence 8988733222 23466666777776 7776544
No 333
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.74 E-value=1.2 Score=38.33 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=57.3
Q ss_pred CCeEEEEccccHHHHHHH--HHHHccCCCcEEEEEeCChhH---HHHHHHHhcCCCCcEEEEEc----chHHH----hhh
Q 041509 41 AQLMVVACANVANATTLA--LAAAAHQTGGRVVCILRRVEE---YKLSKKILGLDASHVEFVIG----DAQSL----LLS 107 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~--la~a~~~~~g~v~tiE~~~~~---~~~Ar~~~~~~~~~V~~~~g----da~e~----l~~ 107 (211)
++.++=++-+|+|-+|.. ||..+...+.+|.-+|.|+-. .+..+.+.+. ..+.++.. |..+. +..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~--~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKR--LGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHh--CCeEEEeCCCCCCHHHHHHHHHHH
Confidence 344555523889998765 565555546688888877532 2233333331 12444432 22222 221
Q ss_pred -ccCCccEEEEcCCcCcH-----HHHHHHHHhcCC------CCcEEEEEecC
Q 041509 108 -HFREADFVLIDCNLENH-----EGVLRAVQAGNK------PNGAVVVGYNA 147 (211)
Q Consensus 108 -l~~~fD~VfiD~~~~~y-----~~~l~~~~~~L~------pgG~viv~dn~ 147 (211)
..+.||+|++|.....+ .+.++.+.+... |.+.++|.+-.
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~ 201 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT 201 (272)
T ss_pred HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence 14679999999876532 233444444444 67888877753
No 334
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=92.71 E-value=2.9 Score=30.48 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=59.2
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEE-EEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVV-CILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~-tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
+|.=| |+|........+.....++.+++ .+|.+++..+.+.+.+. +. ...|..+++.. ..+|+|++..+.
T Consensus 2 ~v~ii-G~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~-----~~-~~~~~~~ll~~--~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGII-GAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG-----IP-VYTDLEELLAD--EDVDAVIIATPP 72 (120)
T ss_dssp EEEEE-STSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT-----SE-EESSHHHHHHH--TTESEEEEESSG
T ss_pred EEEEE-CCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc-----cc-chhHHHHHHHh--hcCCEEEEecCC
Confidence 46677 88665332222222111356665 57899988777655544 22 67778887763 589999999988
Q ss_pred CcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 122 ENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 122 ~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
....++...+.+ .|.-++++=.+
T Consensus 73 ~~h~~~~~~~l~----~g~~v~~EKP~ 95 (120)
T PF01408_consen 73 SSHAEIAKKALE----AGKHVLVEKPL 95 (120)
T ss_dssp GGHHHHHHHHHH----TTSEEEEESSS
T ss_pred cchHHHHHHHHH----cCCEEEEEcCC
Confidence 877777777775 35556657444
No 335
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=92.70 E-value=2.7 Score=37.20 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=60.6
Q ss_pred hhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEc--chHHHhhhc-cCC
Q 041509 37 AGNNAQLMVVACA-NVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIG--DAQSLLLSH-FRE 111 (211)
Q Consensus 37 ~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g--da~e~l~~l-~~~ 111 (211)
...+.++||-. | .+.|..++.+|++. +. +|++++.+++..+.+++ +. ...-+..... +..+.+.++ .+.
T Consensus 183 ~~~~g~~VlV~-G~G~vG~~a~~~ak~~---G~~~vi~~~~~~~~~~~~~~-lG-a~~~i~~~~~~~~~~~~v~~~~~~g 256 (368)
T cd08300 183 KVEPGSTVAVF-GLGAVGLAVIQGAKAA---GASRIIGIDINPDKFELAKK-FG-ATDCVNPKDHDKPIQQVLVEMTDGG 256 (368)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEEeCCHHHHHHHHH-cC-CCEEEcccccchHHHHHHHHHhCCC
Confidence 34567888888 5 45677777777765 45 79999999999888864 22 2111221111 233333333 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~d 145 (211)
+|+||--... ...++.+.+.|+++ |.++..-
T Consensus 257 ~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 257 VDYTFECIGN---VKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CcEEEECCCC---hHHHHHHHHhhccCCCeEEEEc
Confidence 9988733222 24566677778776 7777654
No 336
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.61 E-value=0.42 Score=43.43 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=44.1
Q ss_pred HHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHH
Q 041509 29 AEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKK 85 (211)
Q Consensus 29 ~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~ 85 (211)
.++++.+....+.+.|+|+ |.|.||.+-.|+-.. +-.|++||-+....+.|++
T Consensus 142 selvSsi~~f~gi~~vvD~-GaG~G~LSr~lSl~y---~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDV-GAGQGHLSRFLSLGY---GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHhhcCCCeeEEc-CCCchHHHHHHhhcc---CceEEEeccchHHHHHHHH
Confidence 5677788777888999999 999999999998654 6799999999777666653
No 337
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=92.58 E-value=0.54 Score=39.82 Aligned_cols=71 Identities=27% Similarity=0.223 Sum_probs=43.0
Q ss_pred cHHHHHH--HHHHHccCCCcEEEEEeCChhH--HHHHHHHhc--CCCCcEEEEEcchHHHhhhc-----cCCccEEEEcC
Q 041509 51 VANATTL--ALAAAAHQTGGRVVCILRRVEE--YKLSKKILG--LDASHVEFVIGDAQSLLLSH-----FREADFVLIDC 119 (211)
Q Consensus 51 g~G~stl--~la~a~~~~~g~v~tiE~~~~~--~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l-----~~~fD~VfiD~ 119 (211)
|.|-+|. .||.++...+++|+-||-||.. .+.++...+ ...+++++..++-...+... ...||+|++|.
T Consensus 12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~VlvDl 91 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLVDL 91 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEEeC
Confidence 4555554 4666665568999999999874 444332222 23556777666533333221 24699999996
Q ss_pred Cc
Q 041509 120 NL 121 (211)
Q Consensus 120 ~~ 121 (211)
..
T Consensus 92 eG 93 (231)
T PF07015_consen 92 EG 93 (231)
T ss_pred CC
Confidence 43
No 338
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=92.49 E-value=3.6 Score=35.45 Aligned_cols=102 Identities=12% Similarity=0.130 Sum_probs=63.6
Q ss_pred HhhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cchHHHhhhccCCcc
Q 041509 36 AAGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GDAQSLLLSHFREAD 113 (211)
Q Consensus 36 ~~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l~~~fD 113 (211)
+...++++||-. | .+.|..++.+|... .+.+|++++.+++..+.+++ +. ...-+.... .+..+.+..+.+.+|
T Consensus 158 ~~~~~g~~vlV~-g~g~vG~~~~~la~~~--~g~~v~~~~~~~~~~~~~~~-~g-~~~v~~~~~~~~~~~~v~~~~~~~d 232 (338)
T PRK09422 158 SGIKPGQWIAIY-GAGGLGNLALQYAKNV--FNAKVIAVDINDDKLALAKE-VG-ADLTINSKRVEDVAKIIQEKTGGAH 232 (338)
T ss_pred cCCCCCCEEEEE-CCcHHHHHHHHHHHHh--CCCeEEEEeCChHHHHHHHH-cC-CcEEecccccccHHHHHHHhcCCCc
Confidence 444567788777 5 34677777777653 26789999999999888854 32 211111111 222233333334689
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.++++.... ..++.+.+.|+++|.++.+.
T Consensus 233 ~vi~~~~~~---~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 233 AAVVTAVAK---AAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred EEEEeCCCH---HHHHHHHHhccCCCEEEEEe
Confidence 888886533 55777788888899887654
No 339
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.34 E-value=0.75 Score=42.01 Aligned_cols=95 Identities=19% Similarity=0.149 Sum_probs=61.1
Q ss_pred ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhh------c--------cCCccEE
Q 041509 50 NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLS------H--------FREADFV 115 (211)
Q Consensus 50 tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~------l--------~~~fD~V 115 (211)
-|.||.++.+|.+....+-+|+++|+|+...+...+ ....+..=+-.+.+.. + ...-|++
T Consensus 15 iGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~------G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~ 88 (436)
T COG0677 15 IGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR------GESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVF 88 (436)
T ss_pred EccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC------CcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEE
Confidence 468899999988887767899999999987765432 2222223332322211 1 1256777
Q ss_pred EEcCC----------cCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 116 LIDCN----------LENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 116 fiD~~----------~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
++.-+ .+...+..+.+.+.|++ |-++|.....++|
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~k-G~LVIlEST~~PG 133 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAARSIAPVLKK-GDLVILESTTPPG 133 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHHHHHHHhcCC-CCEEEEecCCCCC
Confidence 66421 11236778888999997 6677778888887
No 340
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.19 E-value=0.2 Score=42.16 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=34.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
..|-.+.|-| ||.||.---+..--+..=..|++-|+|+++++.|++|+.
T Consensus 50 ~~p~tLyDPC-CG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 50 KGPYTLYDPC-CGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp -S-EEEEETT--TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCCeeeeccC-CCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 3456789997 999997554443322223789999999999999999974
No 341
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.18 E-value=1.3 Score=40.92 Aligned_cols=105 Identities=14% Similarity=0.075 Sum_probs=57.0
Q ss_pred CCeEEEEccccHHHHHHH--HHHHcc-CCCcEEEEEeCChh---HHHHHHHHhcCCCCcEEEEE----cchHHHh----h
Q 041509 41 AQLMVVACANVANATTLA--LAAAAH-QTGGRVVCILRRVE---EYKLSKKILGLDASHVEFVI----GDAQSLL----L 106 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~--la~a~~-~~~g~v~tiE~~~~---~~~~Ar~~~~~~~~~V~~~~----gda~e~l----~ 106 (211)
|..++=++-+|+|-+|.. ||..+. ..+.+|.-|+.|.. +.+..+..... ..+.+.. .++.++. .
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~--~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQ--VGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHh--cCCceEecCCCCCHHHHHHHHHH
Confidence 344555522899998775 454442 23556766666643 23322222221 1122221 2333332 2
Q ss_pred hc-cCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 107 SH-FREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 107 ~l-~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
.. ...||+|++|.+.. ...+.+..+.+.+.|.+.++|.|..
T Consensus 177 ~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~ 223 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAM 223 (428)
T ss_pred HHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEecc
Confidence 11 46799999998764 2344555566677888888888754
No 342
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.13 E-value=1.4 Score=38.16 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=54.8
Q ss_pred CCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.+.++||-+ | .++|..++.+|++.. ...|+++|.+++.++.|+.. . ++ |..+. ....+|+||
T Consensus 143 ~~~~~vlV~-G~G~vG~~a~q~ak~~G--~~~v~~~~~~~~rl~~a~~~-~-------~i--~~~~~---~~~g~Dvvi- 205 (308)
T TIGR01202 143 VKVLPDLIV-GHGTLGRLLARLTKAAG--GSPPAVWETNPRRRDGATGY-E-------VL--DPEKD---PRRDYRAIY- 205 (308)
T ss_pred cCCCcEEEE-CCCHHHHHHHHHHHHcC--CceEEEeCCCHHHHHhhhhc-c-------cc--Chhhc---cCCCCCEEE-
Confidence 356678888 5 457888888887752 23477889998877766542 1 01 11110 134689887
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+.-. ...++.+.+.|+++|.++++-
T Consensus 206 d~~G~--~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 206 DASGD--PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ECCCC--HHHHHHHHHhhhcCcEEEEEe
Confidence 44322 235677788889999887643
No 343
>PRK13699 putative methylase; Provisional
Probab=92.08 E-value=0.47 Score=39.84 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=40.0
Q ss_pred HHHHHHHh--hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc
Q 041509 30 EFISALAA--GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 30 ~lL~~l~~--~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
+++..++. ..+++.|||-+ +|+|.++++.. .+ +-+.+++|++++..+.|.+.++
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf-~Gsgtt~~aa~-~~---~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPF-AGSGSTCVAAL-QS---GRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCC-CCCCHHHHHHH-Hc---CCCEEEEecCHHHHHHHHHHHH
Confidence 44554443 35778899995 89997655433 33 5689999999999999998886
No 344
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.96 E-value=0.76 Score=39.50 Aligned_cols=102 Identities=12% Similarity=0.058 Sum_probs=56.9
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH-hc--CCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI-LG--LDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~-~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
+|+=+ |+|.- +..+|..+...+-.|+.++. ++..+..+++ +. .......+ ......-.....+.+|+||+-.
T Consensus 2 kI~Ii-G~G~i--G~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 2 RIAVV-GAGAV--GGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred eEEEE-CCCHH--HHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccCCCCEEEEEe
Confidence 46667 66543 33444444333567999998 6665554432 11 11111111 1111111111236899999998
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
......+.++.+.+.+.++..++..-|-+.
T Consensus 77 k~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 77 KAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred cccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 877788899999888877555555567554
No 345
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=91.94 E-value=3.3 Score=36.54 Aligned_cols=102 Identities=13% Similarity=0.118 Sum_probs=58.3
Q ss_pred HhhCCCCeEEEEccccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEE--cchHHHhhhc-cCC
Q 041509 36 AAGNNAQLMVVACANVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVI--GDAQSLLLSH-FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~--gda~e~l~~l-~~~ 111 (211)
+...+.++||-..+.+.|..++.+|++. +. +|++++.+++..+.|++ +. ...-+.... .+..+.+.++ .+.
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~---G~~~vi~~~~~~~~~~~~~~-~G-a~~~i~~~~~~~~~~~~v~~~~~~~ 257 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIR---GASRIIGVDLNPSKFEQAKK-FG-VTEFVNPKDHDKPVQEVIAEMTGGG 257 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHH-cC-CceEEcccccchhHHHHHHHHhCCC
Confidence 4455678888882245666666677765 44 89999999999888865 22 211122111 1122333322 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~d 145 (211)
+|++| |+--. ...+..+.+.++++ |.+++.-
T Consensus 258 ~d~vi-d~~G~--~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 258 VDYSF-ECTGN--IDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CCEEE-ECCCC--hHHHHHHHHHhhcCCCEEEEEC
Confidence 89665 44321 23455566677785 7776544
No 346
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=91.83 E-value=1.3 Score=37.93 Aligned_cols=100 Identities=15% Similarity=0.067 Sum_probs=59.6
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC---CCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD---ASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~---~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
+|.=+ |+| ..+..+|..+...+.+|+.++.+++..+..+++ +. ........ ...+-.... +++|+||+-.
T Consensus 2 ~I~Ii-G~G--~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~--g~~~~~~~~~~~~-~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 2 KIAIL-GAG--AIGGLFGAALAQAGHDVTLVARRGAHLDALNEN--GLRLEDGEITVPV-LAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred EEEEE-CCC--HHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc--CCcccCCceeecc-cCCCChhHc-CCCCEEEEec
Confidence 46667 664 444455554444456899999988776655542 21 11111000 011111222 6899999988
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
........++.+.+.+.++..++...|-+.
T Consensus 75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred ccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 777778899999988877556666667553
No 347
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.82 E-value=3.9 Score=35.57 Aligned_cols=100 Identities=22% Similarity=0.220 Sum_probs=58.7
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcc----hHHHhhhc-
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGD----AQSLLLSH- 108 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd----a~e~l~~l- 108 (211)
+...+.++||-. |+ +.|..++.+|++. +.+ |+.++.+++..+.+++ +. ...-+.....+ +.++....
T Consensus 158 ~~~~~g~~vlI~-g~g~vG~~a~~lak~~---G~~~v~~~~~~~~~~~~~~~-~g-~~~vi~~~~~~~~~~~~~~~~~~~ 231 (343)
T cd05285 158 AGVRPGDTVLVF-GAGPIGLLTAAVAKAF---GATKVVVTDIDPSRLEFAKE-LG-ATHTVNVRTEDTPESAEKIAELLG 231 (343)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCcEEEEECCCHHHHHHHHH-cC-CcEEeccccccchhHHHHHHHHhC
Confidence 344567787777 54 4588888888875 455 8999998888877755 22 11111111122 22222212
Q ss_pred cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 109 FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 109 ~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
...+|+||-..... ..++...+.|+++|.++.+
T Consensus 232 ~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 232 GKGPDVVIECTGAE---SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence 34699887543321 2456667777888887754
No 348
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=91.81 E-value=0.49 Score=40.36 Aligned_cols=72 Identities=22% Similarity=0.192 Sum_probs=45.6
Q ss_pred CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 67 GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 67 ~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
..+|+++|.+++.++.|++. |..+. ...+ .+.+ ..+|+|++..+.....++++++.+.+++ |.+++ |-
T Consensus 11 ~~~v~g~d~~~~~~~~a~~~--g~~~~---~~~~-~~~~----~~~DlvvlavP~~~~~~~l~~~~~~~~~-~~iv~-Dv 78 (258)
T PF02153_consen 11 DVEVYGYDRDPETLEAALEL--GIIDE---ASTD-IEAV----EDADLVVLAVPVSAIEDVLEEIAPYLKP-GAIVT-DV 78 (258)
T ss_dssp TSEEEEE-SSHHHHHHHHHT--TSSSE---EESH-HHHG----GCCSEEEE-S-HHHHHHHHHHHHCGS-T-TSEEE-E-
T ss_pred CeEEEEEeCCHHHHHHHHHC--CCeee---ccCC-HhHh----cCCCEEEEcCCHHHHHHHHHHhhhhcCC-CcEEE-Ee
Confidence 47999999999998888643 22222 1222 3332 4579999999998999999999998887 55554 63
Q ss_pred CCCC
Q 041509 147 AFRK 150 (211)
Q Consensus 147 ~~~~ 150 (211)
...+
T Consensus 79 ~SvK 82 (258)
T PF02153_consen 79 GSVK 82 (258)
T ss_dssp -S-C
T ss_pred CCCC
Confidence 3333
No 349
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.71 E-value=0.85 Score=39.17 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=56.4
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCc
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLEN 123 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~ 123 (211)
|.=| |+ |..+..++.++...+.+|+.+|.+++..+.+.+. +. +.....+. +. -...|+||+..+...
T Consensus 3 I~II-G~--G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~--g~---~~~~~~~~-~~----~~~aDlVilavp~~~ 69 (279)
T PRK07417 3 IGIV-GL--GLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER--GL---VDEASTDL-SL----LKDCDLVILALPIGL 69 (279)
T ss_pred EEEE-ee--cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC--CC---cccccCCH-hH----hcCCCEEEEcCCHHH
Confidence 4555 54 5555666666654466899999999888777542 21 11111222 22 246799999988777
Q ss_pred HHHHHHHHHhcCCCCcEEEEEec
Q 041509 124 HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 124 y~~~l~~~~~~L~pgG~viv~dn 146 (211)
..+.++.+.+.+++ +.++ .|.
T Consensus 70 ~~~~~~~l~~~l~~-~~ii-~d~ 90 (279)
T PRK07417 70 LLPPSEQLIPALPP-EAIV-TDV 90 (279)
T ss_pred HHHHHHHHHHhCCC-CcEE-EeC
Confidence 77888888888876 5554 454
No 350
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=91.63 E-value=3.7 Score=34.29 Aligned_cols=100 Identities=17% Similarity=0.121 Sum_probs=60.8
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
....+.+.||=. | .+.|..++.++.+. +.+|+.++.+++..+.+++ +. ...-+.-...+..+.+..+ ...
T Consensus 132 ~~~~~g~~vlI~-g~~g~~g~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~ 205 (320)
T cd05286 132 YPVKPGDTVLVH-AAAGGVGLLLTQWAKAL---GATVIGTVSSEEKAELARA-AG-ADHVINYRDEDFVERVREITGGRG 205 (320)
T ss_pred cCCCCCCEEEEE-cCCchHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHH-CC-CCEEEeCCchhHHHHHHHHcCCCC
Confidence 445567788877 6 46888888888775 6789999999888877754 22 2111111111222223222 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+++ |+... .....+.+.|+++|.++.+.
T Consensus 206 ~d~vl-~~~~~---~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 206 VDVVY-DGVGK---DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred eeEEE-ECCCc---HhHHHHHHhhccCcEEEEEe
Confidence 99988 43322 34566677788888877554
No 351
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.49 E-value=2.7 Score=38.20 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=59.6
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEcC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLIDC 119 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD~ 119 (211)
+|+-+ |+ |..+..++..+...+..|+.+|.+++..+.+++. ..++++.||+.+ .+... -..+|.|++..
T Consensus 2 ~viIi-G~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-----~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 2 KIIIV-GA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-----LDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred EEEEE-CC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-----cCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 45555 54 8888889988876577999999999987776642 237888898854 33433 45799998876
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
+............+.+.|.-.+++
T Consensus 74 ~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 74 DSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred CChHHHHHHHHHHHHhcCCCeEEE
Confidence 544333333333333433333333
No 352
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=91.48 E-value=5.5 Score=34.45 Aligned_cols=126 Identities=19% Similarity=0.141 Sum_probs=87.3
Q ss_pred CCChhHHHHHHHH----HhhCCCCeEEEEccccHHHHHHHHHHHccCCC--cEEEEEeCChhHHHHHHHHhc-C-CCCcE
Q 041509 23 AKEPNEAEFISAL----AAGNNAQLMVVACANVANATTLALAAAAHQTG--GRVVCILRRVEEYKLSKKILG-L-DASHV 94 (211)
Q Consensus 23 ~~~~~~~~lL~~l----~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~--g~v~tiE~~~~~~~~Ar~~~~-~-~~~~V 94 (211)
...+-.+.+|... +....+...+|+ |+|.---|-.|..++.+.+ .+.+.||++...++--.+.+. . ..-.|
T Consensus 57 YpTRtEaaIl~~~a~Eia~~~g~~~lveL-GsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v 135 (321)
T COG4301 57 YPTRTEAAILQARAAEIASITGACTLVEL-GSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEV 135 (321)
T ss_pred cCchhHHHHHHHHHHHHHHhhCcceEEEe-cCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeE
Confidence 3455556666544 445678999999 9998888888888886533 578999999987765444443 2 23357
Q ss_pred EEEEcchHHHhhhcc--CCccEEEEcCCcCc-----HHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 95 EFVIGDAQSLLLSHF--READFVLIDCNLEN-----HEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 95 ~~~~gda~e~l~~l~--~~fD~VfiD~~~~~-----y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
.-++||....|..+. ++==++|+....++ -..++.++...|+||..+++.-+...
T Consensus 136 ~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 136 NALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred eehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 788999888776553 33345666654443 36688888889999998887655443
No 353
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=91.36 E-value=4.9 Score=34.18 Aligned_cols=100 Identities=17% Similarity=0.009 Sum_probs=57.5
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
+...+...||=. | .+.|..++.+|++. +.+++.+..+++..+.+++ + +...-+.....+..+.+.++ ...
T Consensus 135 ~~~~~g~~vlI~-g~~g~ig~~~~~~a~~~---G~~v~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~i~~~~~~~~ 208 (324)
T cd08292 135 LGVKPGQWLIQN-AAGGAVGKLVAMLAAAR---GINVINLVRRDAGVAELRA-L-GIGPVVSTEQPGWQDKVREAAGGAP 208 (324)
T ss_pred hCCCCCCEEEEc-ccccHHHHHHHHHHHHC---CCeEEEEecCHHHHHHHHh-c-CCCEEEcCCCchHHHHHHHHhCCCC
Confidence 344566777776 4 45888888888876 5677777666666665554 2 32111111111222222222 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+|| |+... .....+.+.|+++|.++.+-
T Consensus 209 ~d~v~-d~~g~---~~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 209 ISVAL-DSVGG---KLAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred CcEEE-ECCCC---hhHHHHHHhhcCCcEEEEEe
Confidence 99988 54322 23456677788889887653
No 354
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=91.26 E-value=3.6 Score=35.16 Aligned_cols=99 Identities=19% Similarity=0.148 Sum_probs=60.8
Q ss_pred hCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccE
Q 041509 38 GNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADF 114 (211)
Q Consensus 38 ~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~ 114 (211)
..+.+.||=. | .++|..++.+|++. +.+|+.++.+++..+.+++.+. ....+.....+..+.+..+ .+.+|.
T Consensus 143 ~~~~~~vlI~-g~~g~ig~~~~~~a~~~---G~~vi~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~v~~~~~~~~d~ 217 (329)
T cd05288 143 PKPGETVVVS-AAAGAVGSVVGQIAKLL---GARVVGIAGSDEKCRWLVEELG-FDAAINYKTPDLAEALKEAAPDGIDV 217 (329)
T ss_pred CCCCCEEEEe-cCcchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHhhcC-CceEEecCChhHHHHHHHhccCCceE
Confidence 3455778777 6 46787777788774 6789999999988887766433 1111222112222222222 357998
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++ |+... ..++.+.+.|+++|.++.+-
T Consensus 218 vi-~~~g~---~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 218 YF-DNVGG---EILDAALTLLNKGGRIALCG 244 (329)
T ss_pred EE-EcchH---HHHHHHHHhcCCCceEEEEe
Confidence 87 54322 35677777888888877543
No 355
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.05 E-value=0.43 Score=44.98 Aligned_cols=97 Identities=15% Similarity=0.119 Sum_probs=64.9
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCC--CcEEEEEeCChhHHHHHHH-HhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQT--GGRVVCILRRVEEYKLSKK-ILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~--~g~v~tiE~~~~~~~~Ar~-~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
...|.-+ |.|-|-..-+..+++... .-++++||.||.++..-+. |++.-.++|+++.+|-.+.-+. .++.|+++.
T Consensus 368 ~tVimvl-GaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap-~eq~DI~VS 445 (649)
T KOG0822|consen 368 TTVIMVL-GAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAP-REQADIIVS 445 (649)
T ss_pred eEEEEEe-cCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCc-hhhccchHH
Confidence 3446677 999998766655554432 3568999999998765543 3335578999999998776532 467888864
Q ss_pred c-----CCcCcHHHHHHHHHhcCCCCc
Q 041509 118 D-----CNLENHEGVLRAVQAGNKPNG 139 (211)
Q Consensus 118 D-----~~~~~y~~~l~~~~~~L~pgG 139 (211)
. ++-+.-.+.++-+...|+|.|
T Consensus 446 ELLGSFGDNELSPECLDG~q~fLkpdg 472 (649)
T KOG0822|consen 446 ELLGSFGDNELSPECLDGAQKFLKPDG 472 (649)
T ss_pred HhhccccCccCCHHHHHHHHhhcCCCc
Confidence 3 233334666777777777754
No 356
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=91.04 E-value=6.6 Score=34.03 Aligned_cols=98 Identities=17% Similarity=0.082 Sum_probs=58.1
Q ss_pred CCCCeEEEEccc-cHHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccE
Q 041509 39 NNAQLMVVACAN-VANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~ 114 (211)
.+.++||-. |+ ++|..++.+|++. +.+ |+.++.+++..+.+++. +...-+.....+..+.+..+ .+.+|+
T Consensus 160 ~~g~~vlI~-~~g~vg~~a~~la~~~---G~~~v~~~~~~~~~~~~~~~~--g~~~~v~~~~~~~~~~l~~~~~~~~~d~ 233 (340)
T TIGR00692 160 ISGKSVLVT-GAGPIGLMAIAVAKAS---GAYPVIVSDPNEYRLELAKKM--GATYVVNPFKEDVVKEVADLTDGEGVDV 233 (340)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHc---CCcEEEEECCCHHHHHHHHHh--CCcEEEcccccCHHHHHHHhcCCCCCCE
Confidence 455666556 44 4777777788775 454 88888888777776542 22111222233443433333 357999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++-..... ..+..+.+.|+++|.++...
T Consensus 234 vld~~g~~---~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 234 FLEMSGAP---KALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEECCCCH---HHHHHHHHhhcCCCEEEEEc
Confidence 87542322 34666777788888877653
No 357
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=91.04 E-value=2.8 Score=36.91 Aligned_cols=98 Identities=19% Similarity=0.187 Sum_probs=58.8
Q ss_pred CCCCeEEEEccc-cHHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccE
Q 041509 39 NNAQLMVVACAN-VANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~ 114 (211)
.+.++||-. |+ +.|..++.+|++. +.+ +++++.+++..+.+++ +. ...-+.....+..+.+..+ ...+|+
T Consensus 186 ~~g~~VlI~-g~g~vG~~~~~lak~~---G~~~vi~~~~s~~~~~~~~~-~g-~~~v~~~~~~~~~~~l~~~~~~~~~d~ 259 (367)
T cd08263 186 RPGETVAVI-GVGGVGSSAIQLAKAF---GASPIIAVDVRDEKLAKAKE-LG-ATHTVNAAKEDAVAAIREITGGRGVDV 259 (367)
T ss_pred CCCCEEEEE-CCcHHHHHHHHHHHHc---CCCeEEEEeCCHHHHHHHHH-hC-CceEecCCcccHHHHHHHHhCCCCCCE
Confidence 456778766 54 4788888888775 445 9999999888777754 22 1111111122222222222 357999
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+ |+-... ...+.+.+.|+++|.++...
T Consensus 260 vl-d~vg~~--~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 260 VV-EALGKP--ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EE-EeCCCH--HHHHHHHHHHhcCCEEEEEc
Confidence 88 543331 25666777888899887654
No 358
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.02 E-value=0.94 Score=37.59 Aligned_cols=119 Identities=14% Similarity=0.068 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHhhcCCcC------CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhH
Q 041509 6 AENATKAYLKTLKMGQKA------KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEE 79 (211)
Q Consensus 6 ~~~~~~ay~~~~~~~~~~------~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~ 79 (211)
|++.+.....++....+. +.....+-+........+++||-+ |.. ..+.+.|+.+.+ ..+||-+|++|.+
T Consensus 4 pe~GITe~vkT~~s~~~v~Dvv~eI~~~K~~ai~~~~~~~E~~~vli~-G~Y--ltG~~~a~~Ls~-~~~vtv~Di~p~~ 79 (254)
T COG4017 4 PEYGITEMVKTIDSKTRVVDVVNEIAKKKYQAIRDFLEGEEFKEVLIF-GVY--LTGNYTAQMLSK-ADKVTVVDIHPFM 79 (254)
T ss_pred CCccHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhhhhcccCcceEEEE-Eee--ehhHHHHHHhcc-cceEEEecCCHHH
Confidence 677777777776654332 333334444444456678999999 763 123556766654 7899999999966
Q ss_pred HHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcC-cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 80 YKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLE-NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 80 ~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~-~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
-... ..+|+|..+ +..+.+.+|+|+=-.... --++. ++.+.| +.++| .|
T Consensus 80 r~~l-------p~~v~Fr~~-----~~~~~G~~DlivDlTGlGG~~Pe~----L~~fnp-~vfiV-Ed 129 (254)
T COG4017 80 RGFL-------PNNVKFRNL-----LKFIRGEVDLIVDLTGLGGIEPEF----LAKFNP-KVFIV-ED 129 (254)
T ss_pred HhcC-------CCCccHhhh-----cCCCCCceeEEEeccccCCCCHHH----HhccCC-ceEEE-EC
Confidence 4322 344666555 343578999987322222 11233 344566 66666 54
No 359
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.96 E-value=0.42 Score=41.03 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=56.8
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---------CC-C--------CcEEEEEcchHHH
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---------LD-A--------SHVEFVIGDAQSL 104 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---------~~-~--------~~V~~~~gda~e~ 104 (211)
+|-=| |+ |+.+..+|..+...+-+|+.+|.+++.++.+++.++ +. . .++++ ..|..+
T Consensus 5 kI~VI-G~--G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 5 KIGVI-GA--GTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred EEEEE-cc--CHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 46666 65 455555555554445689999999999876654332 21 1 13332 233221
Q ss_pred hhhccCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 105 LLSHFREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 105 l~~l~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
.+..|+|++..... ...+.++.+.+.++| +.++. .|.
T Consensus 80 ----~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~-~~il~-s~t 118 (282)
T PRK05808 80 ----LKDADLVIEAATENMDLKKKIFAQLDEIAKP-EAILA-TNT 118 (282)
T ss_pred ----hccCCeeeecccccHHHHHHHHHHHHhhCCC-CcEEE-ECC
Confidence 24679999887543 236889999888887 56654 443
No 360
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=90.80 E-value=5.7 Score=35.02 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=57.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
.+.++||-....++|..++.+|++. +.+++.++.+++..+.+.+.+. . +.+ +...+. +.+..+...+|++|-.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~---G~~vi~~~~~~~~~~~~~~~~G-a-~~~-i~~~~~-~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM---GHHVTVISSSDKKREEALEHLG-A-DDY-LVSSDA-AEMQEAADSLDYIIDT 251 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHHhcC-C-cEE-ecCCCh-HHHHHhcCCCcEEEEC
Confidence 3567787772256777777788775 5678888888876666554333 1 211 111222 2222233468988733
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
... ...++.+.+.|+++|.++...
T Consensus 252 ~g~---~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 252 VPV---FHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CCc---hHHHHHHHHHhccCCEEEEEC
Confidence 322 235666777888999887754
No 361
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.79 E-value=1.8 Score=38.24 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=56.5
Q ss_pred CCeEEEEccccHHHHHHH--HHHHccCCCcEEEEEeCChhHH---HHHHHHhcCCCCcEEEEEc----chH----HHhh-
Q 041509 41 AQLMVVACANVANATTLA--LAAAAHQTGGRVVCILRRVEEY---KLSKKILGLDASHVEFVIG----DAQ----SLLL- 106 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~--la~a~~~~~g~v~tiE~~~~~~---~~Ar~~~~~~~~~V~~~~g----da~----e~l~- 106 (211)
+..++=++-+|+|-+|.. ||..+...+++|.-++.|.... +..+.+.. ...+.++.. |+. +.+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~--~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGE--RVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHH--HcCceEEEeCCCCCHHHHHHHHHHH
Confidence 445555522899999876 5555555567888888776322 23322222 112444332 221 2221
Q ss_pred hccCCccEEEEcCCcCcH-----HHHHHHHHhc------CCCCcEEEEEecC
Q 041509 107 SHFREADFVLIDCNLENH-----EGVLRAVQAG------NKPNGAVVVGYNA 147 (211)
Q Consensus 107 ~l~~~fD~VfiD~~~~~y-----~~~l~~~~~~------L~pgG~viv~dn~ 147 (211)
.....||+|++|.+.... .+.++.+.+. ..|.+.++|.|-.
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~ 243 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT 243 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC
Confidence 125789999999865422 2334444332 2366667776644
No 362
>PRK14974 cell division protein FtsY; Provisional
Probab=90.66 E-value=3.1 Score=37.16 Aligned_cols=104 Identities=22% Similarity=0.172 Sum_probs=56.6
Q ss_pred CCeEEEEccccHHHHHHH--HHHHccCCCcEEEEEeCC---hhHHHHHHHHhcCCCCcEEEEE----cchHHHh----hh
Q 041509 41 AQLMVVACANVANATTLA--LAAAAHQTGGRVVCILRR---VEEYKLSKKILGLDASHVEFVI----GDAQSLL----LS 107 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~--la~a~~~~~g~v~tiE~~---~~~~~~Ar~~~~~~~~~V~~~~----gda~e~l----~~ 107 (211)
|..|+=++-+|+|-+|.. ||..+...+.+|.-+..| ..+.++.+.+...+. +.++. +|..+.+ ..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lg--v~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLG--VKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcC--CceecccCCCCHHHHHHHHHHH
Confidence 455555523899998844 455554445577666666 334444444433111 22221 2322221 11
Q ss_pred -ccCCccEEEEcCCcC-----cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 108 -HFREADFVLIDCNLE-----NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 108 -l~~~fD~VfiD~~~~-----~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
....+|+|++|.... ++.+.++.+.+.+.|...++|.|-
T Consensus 218 ~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a 262 (336)
T PRK14974 218 AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDA 262 (336)
T ss_pred HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecc
Confidence 135799999997644 234455666666788777766554
No 363
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=90.59 E-value=6 Score=34.89 Aligned_cols=100 Identities=13% Similarity=0.185 Sum_probs=58.6
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEc--chHHHhhhc-cCC
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIG--DAQSLLLSH-FRE 111 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g--da~e~l~~l-~~~ 111 (211)
...+.++||-+ |+ +.|..++.+|++. +. +|++++.+++..+.+++ +. ...-+....- +..+.+..+ .+.
T Consensus 181 ~~~~g~~vlV~-G~g~vG~~~~~~a~~~---G~~~Vi~~~~~~~~~~~~~~-~g-a~~~i~~~~~~~~~~~~~~~~~~~g 254 (365)
T cd08277 181 KVEPGSTVAVF-GLGAVGLSAIMGAKIA---GASRIIGVDINEDKFEKAKE-FG-ATDFINPKDSDKPVSEVIREMTGGG 254 (365)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCeEEEEeCCHHHHHHHHH-cC-CCcEeccccccchHHHHHHHHhCCC
Confidence 34567888888 54 5666667777765 45 79999999998888865 32 1111221111 112222222 346
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPN-GAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~viv~d 145 (211)
+|+|| |+... ...++...+.++++ |.++++-
T Consensus 255 ~d~vi-d~~g~--~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 255 VDYSF-ECTGN--ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCEEE-ECCCC--hHHHHHHHHhcccCCCEEEEEc
Confidence 99887 43221 24566677778775 7776644
No 364
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.49 E-value=0.83 Score=39.86 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=61.2
Q ss_pred CeEEEEccccH--HHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH--hc--CCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 42 QLMVVACANVA--NATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI--LG--LDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 42 ~~VLEi~Gtg~--G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~--~~--~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
.+|+=+ |+|. |+.+..|+++ +..|+.++..++.++..+++ +. .......+... ... +...++||+|
T Consensus 3 m~I~Ii-GaGaiG~~~a~~L~~~----G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~-~~~--~~~~~~~D~v 74 (305)
T PRK05708 3 MTWHIL-GAGSLGSLWACRLARA----GLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIP-AET--ADAAEPIHRL 74 (305)
T ss_pred ceEEEE-CCCHHHHHHHHHHHhC----CCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccC-CCC--cccccccCEE
Confidence 357777 6553 3344445432 56799999987766655542 22 11111111110 100 1113589999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
|+.....+..+.++.+.+.+.++..++.+-|-+..
T Consensus 75 iv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~ 109 (305)
T PRK05708 75 LLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGS 109 (305)
T ss_pred EEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCC
Confidence 99876556678899999999888878888887754
No 365
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=90.46 E-value=3.3 Score=35.91 Aligned_cols=96 Identities=18% Similarity=0.085 Sum_probs=55.0
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCC--cEEEEE-eCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTG--GRVVCI-LRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~--g~v~ti-E~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.-+|.=| ||| |+.....+.++...+ -.++++ |.+++.++...+.+.. .-...|..+++. .+.+|+|+|
T Consensus 3 ~irvgii-G~G-~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~-----~~~~~~~~~ll~--~~~iD~V~I 73 (342)
T COG0673 3 MIRVGII-GAG-GIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGI-----AKAYTDLEELLA--DPDIDAVYI 73 (342)
T ss_pred eeEEEEE-ccc-HHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCC-----CcccCCHHHHhc--CCCCCEEEE
Confidence 3467778 888 343333333333322 256665 9999887666655441 144566777765 456999999
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEEecCCC
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~ 149 (211)
-.+...+.++...++. .|.-++|+=.+.
T Consensus 74 atp~~~H~e~~~~AL~----aGkhVl~EKPla 101 (342)
T COG0673 74 ATPNALHAELALAALE----AGKHVLCEKPLA 101 (342)
T ss_pred cCCChhhHHHHHHHHh----cCCEEEEcCCCC
Confidence 8776544444433332 244555554443
No 366
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=90.39 E-value=0.29 Score=41.05 Aligned_cols=79 Identities=13% Similarity=0.065 Sum_probs=49.5
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH-hhhc-cCCccEEEEcC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL-LLSH-FREADFVLIDC 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~-l~~l-~~~fD~VfiD~ 119 (211)
-++||| |+-..+..+.-.. --.|+.||.++..-. +...|..+. +|.. .+.||+|.+.-
T Consensus 53 lrlLEV-Gals~~N~~s~~~-----~fdvt~IDLns~~~~--------------I~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 53 LRLLEV-GALSTDNACSTSG-----WFDVTRIDLNSQHPG--------------ILQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred ceEEee-cccCCCCcccccC-----ceeeEEeecCCCCCC--------------ceeeccccCCCCCCcccceeEEEEEE
Confidence 479999 9865553332221 235999999873221 234444443 2222 57999997652
Q ss_pred ------CcCcHHHHHHHHHhcCCCCcE
Q 041509 120 ------NLENHEGVLRAVQAGNKPNGA 140 (211)
Q Consensus 120 ------~~~~y~~~l~~~~~~L~pgG~ 140 (211)
+...--+.++.+.+.|+|+|.
T Consensus 113 VLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 113 VLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 233456788888889999888
No 367
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=90.39 E-value=1.2 Score=38.87 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=57.0
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
.+|+=+ |+|. .+..+|..+...+..|+-+..++. ....+..+. .......+..-.+..... ..+++|+||+..
T Consensus 6 m~I~Ii-G~Ga--iG~~lA~~L~~~g~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vilav 80 (313)
T PRK06249 6 PRIGII-GTGA--IGGFYGAMLARAGFDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVGL 80 (313)
T ss_pred cEEEEE-CCCH--HHHHHHHHHHHCCCeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEEe
Confidence 468888 7543 333333333333567888887762 222111111 111111111001111111 136899999987
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
...+..+.++.+.+.+.+++.++...|-+..
T Consensus 81 K~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~ 111 (313)
T PRK06249 81 KTTANALLAPLIPQVAAPDAKVLLLQNGLGV 111 (313)
T ss_pred cCCChHhHHHHHhhhcCCCCEEEEecCCCCc
Confidence 7666677888888889888877777776643
No 368
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.38 E-value=2.7 Score=38.78 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=55.8
Q ss_pred CCeEEEEcc-ccHHHHHHH--HHHHccCCCcEEEEEeCChhH---HHHHHHHhcCCCCcEEEEE----cchHHH----hh
Q 041509 41 AQLMVVACA-NVANATTLA--LAAAAHQTGGRVVCILRRVEE---YKLSKKILGLDASHVEFVI----GDAQSL----LL 106 (211)
Q Consensus 41 ~~~VLEi~G-tg~G~stl~--la~a~~~~~g~v~tiE~~~~~---~~~Ar~~~~~~~~~V~~~~----gda~e~----l~ 106 (211)
|..|+=+ | +|+|-+|.. ||..+...+.+|.-|+.|+.. .++.+.+.+ ...+.+.. .|+.++ +.
T Consensus 100 ~~vi~lv-G~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~--~~~vp~~~~~~~~dp~~i~~~~l~ 176 (429)
T TIGR01425 100 QNVIMFV-GLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNAT--KARIPFYGSYTESDPVKIASEGVE 176 (429)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhh--ccCCeEEeecCCCCHHHHHHHHHH
Confidence 4445555 6 899988766 565555445577666666543 333222222 12233332 243322 22
Q ss_pred hc-cCCccEEEEcCCcCc-----HHHHHHHHHhcCCCCcEEEEEec
Q 041509 107 SH-FREADFVLIDCNLEN-----HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 107 ~l-~~~fD~VfiD~~~~~-----y~~~l~~~~~~L~pgG~viv~dn 146 (211)
.+ .+.||+|++|..-+. ..+.+..+.+...|.-.++|.|-
T Consensus 177 ~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda 222 (429)
T TIGR01425 177 KFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDG 222 (429)
T ss_pred HHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecc
Confidence 22 358999999986542 23344444445677666666663
No 369
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=90.26 E-value=3.2 Score=35.74 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh
Q 041509 26 PNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL 105 (211)
Q Consensus 26 ~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l 105 (211)
.....+|...-+.++.. =|.. .+|+=..+-.+. + ..-++..+|..|+-+..-+++|.+ ..++++..+|....+
T Consensus 75 a~l~~yl~~i~~lN~~~-~l~~-YpGSP~lA~~ll---R-~qDRl~l~ELHp~D~~~L~~~f~~-d~~vrv~~~DG~~~l 147 (279)
T COG2961 75 AELEPYLDAVRQLNPGG-GLRY-YPGSPLLARQLL---R-EQDRLVLTELHPSDAPLLRNNFAG-DRRVRVLRGDGFLAL 147 (279)
T ss_pred HHHHHHHHHHHHhCCCC-Cccc-CCCCHHHHHHHc---c-hhceeeeeecCccHHHHHHHHhCC-CcceEEEecCcHHHH
Confidence 33344455444443333 3677 676654433333 2 367999999999999999999984 568999999987766
Q ss_pred hhc---cCCccEEEEcCCcC---cHHHHHHHHHhcCC--CCcEEEEEec
Q 041509 106 LSH---FREADFVLIDCNLE---NHEGVLRAVQAGNK--PNGAVVVGYN 146 (211)
Q Consensus 106 ~~l---~~~fD~VfiD~~~~---~y~~~l~~~~~~L~--pgG~viv~dn 146 (211)
... .++=-+|+||.+.+ +|...++.+.+.++ ++|+..+=.-
T Consensus 148 ~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYP 196 (279)
T COG2961 148 KAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYP 196 (279)
T ss_pred hhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEe
Confidence 433 34568999998754 78776666655432 3566555343
No 370
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.24 E-value=1.5 Score=41.58 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=48.1
Q ss_pred ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEcCCc
Q 041509 50 NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLIDCNL 121 (211)
Q Consensus 50 tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD~~~ 121 (211)
||.|-.+..+++.+.+.+-.++.||.|++..+.+++ .....++||+.+ .+.+. -++.|.+++..+.
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~------~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE------RGIRAVLGNAANEEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------CCCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence 445677778888887656789999999999888874 237789999865 34332 3588988776443
No 371
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.19 E-value=3 Score=37.15 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=68.9
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE-
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI- 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi- 117 (211)
..+.+|.-|.|.-.|+-+.-+|..+ ++.|+-+|+|.+.+..-...+ ..+++.+..+...+-.. -.+.|+++-
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~gl---gA~Vtild~n~~rl~~ldd~f---~~rv~~~~st~~~iee~-v~~aDlvIga 238 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGL---GADVTILDLNIDRLRQLDDLF---GGRVHTLYSTPSNIEEA-VKKADLVIGA 238 (371)
T ss_pred CCCccEEEECCccccchHHHHHhcc---CCeeEEEecCHHHHhhhhHhh---CceeEEEEcCHHHHHHH-hhhccEEEEE
Confidence 3445566673455688888888776 789999999988776655443 45788888888776543 467888763
Q ss_pred ---cCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 118 ---DCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 118 ---D~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
-+.+ ...=..++..+.++| |.++| |-+...|
T Consensus 239 VLIpgak-aPkLvt~e~vk~Mkp-GsViv-DVAiDqG 272 (371)
T COG0686 239 VLIPGAK-APKLVTREMVKQMKP-GSVIV-DVAIDQG 272 (371)
T ss_pred EEecCCC-CceehhHHHHHhcCC-CcEEE-EEEEcCC
Confidence 2222 223355666667787 66665 7777655
No 372
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=90.18 E-value=5.7 Score=33.83 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=60.2
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcc-hHHHhhhc--cCC
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGD-AQSLLLSH--FRE 111 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd-a~e~l~~l--~~~ 111 (211)
...+.+.||=. | .++|..++.+|++. +.+++.+..+++..+.+++ +. ...-+.....+ ..+.+..+ ...
T Consensus 137 ~~~~~~~vlI~-ga~g~~g~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (334)
T PTZ00354 137 DVKKGQSVLIH-AGASGVGTAAAQLAEKY---GAATIITTSSEEKVDFCKK-LA-AIILIRYPDEEGFAPKVKKLTGEKG 210 (334)
T ss_pred CCCCCCEEEEE-cCCchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-cC-CcEEEecCChhHHHHHHHHHhCCCC
Confidence 34456777766 5 57888888888775 5677778888888888854 22 21111111112 22333322 356
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|++| |+-. .+.++.+.+.|+++|.++.+.
T Consensus 211 ~d~~i-~~~~---~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 211 VNLVL-DCVG---GSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred ceEEE-ECCc---hHHHHHHHHHhccCCeEEEEe
Confidence 89988 4432 246667777888889877643
No 373
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.14 E-value=6.7 Score=31.84 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=49.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~ 110 (211)
+.++||-. |++ |..+..+++.+...+.+|+.+..+++..+.+.+.+.. ..+++++.+|..+. +.. ..+
T Consensus 4 ~~~~vlIt-Ga~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAII-GVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-YGNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEE-CCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45788888 653 4455666666655577999999998876655444432 13578888875432 111 135
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
.+|.++..+.
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 6798887653
No 374
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.10 E-value=6.9 Score=32.61 Aligned_cols=96 Identities=22% Similarity=0.114 Sum_probs=59.1
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCcc
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD 113 (211)
+...+.++||-. |+| .|..++.+|.+. +.+ |++++.+++..+.+++. +..+.+..... .... ...+|
T Consensus 93 ~~~~~g~~vlI~-g~g~vg~~~i~~a~~~---g~~~vi~~~~~~~~~~~~~~~--g~~~~~~~~~~---~~~~--~~~~d 161 (277)
T cd08255 93 AEPRLGERVAVV-GLGLVGLLAAQLAKAA---GAREVVGVDPDAARRELAEAL--GPADPVAADTA---DEIG--GRGAD 161 (277)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCcEEEECCCHHHHHHHHHc--CCCccccccch---hhhc--CCCCC
Confidence 445567888888 664 477777788776 445 99999999988877764 11111111110 1111 35799
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++|-..... ...+...+.|+++|.++..-
T Consensus 162 ~vl~~~~~~---~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 162 VVIEASGSP---SALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEEccCCh---HHHHHHHHHhcCCcEEEEEe
Confidence 887543322 35666677788888877543
No 375
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=90.10 E-value=5.8 Score=33.76 Aligned_cols=99 Identities=20% Similarity=0.190 Sum_probs=60.0
Q ss_pred hhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l--~~~f 112 (211)
...+.+.|+=. | .++|..++.+|.+. +.+|+.++.+++..+.+++ + +....+.... .+..+.+..+ .+.+
T Consensus 157 ~~~~g~~vli~-g~g~~g~~~~~~a~~~---G~~v~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (336)
T cd08276 157 PLKPGDTVLVQ-GTGGVSLFALQFAKAA---GARVIATSSSDEKLERAKA-L-GADHVINYRTTPDWGEEVLKLTGGRGV 230 (336)
T ss_pred CCCCCCEEEEE-CCcHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-c-CCCEEEcCCcccCHHHHHHHHcCCCCC
Confidence 34456666655 4 35777777777775 6789999999888887765 2 2211122112 2333333333 3579
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+++ |.... ..+..+.+.|+++|.++.+.
T Consensus 231 d~~i-~~~~~---~~~~~~~~~l~~~G~~v~~g 259 (336)
T cd08276 231 DHVV-EVGGP---GTLAQSIKAVAPGGVISLIG 259 (336)
T ss_pred cEEE-ECCCh---HHHHHHHHhhcCCCEEEEEc
Confidence 9988 43222 34666777888889877643
No 376
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.10 E-value=3.3 Score=36.23 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=63.2
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHH---hc---C--CCCcEEEEEcchHHHhhhccCCccEE
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKI---LG---L--DASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~---~~---~--~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
|.=| |+ |..+..++..+...+-.|+-++.+++..+..+++ .. + +..++.+. .|..+.+ .+.+|+|
T Consensus 3 I~Ii-Ga--Ga~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~---~~~~Dli 75 (326)
T PRK14620 3 ISIL-GA--GSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL---SDNATCI 75 (326)
T ss_pred EEEE-Cc--CHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH---hCCCCEE
Confidence 5556 55 4455555555544456899999998877666653 21 1 11233332 3443332 2578999
Q ss_pred EEcCCcCcHHHHHHHHHh-cCCCCcEEEEEecCCCC
Q 041509 116 LIDCNLENHEGVLRAVQA-GNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~-~L~pgG~viv~dn~~~~ 150 (211)
|+--......+.++.+.+ .+.++..++++.|-+..
T Consensus 76 iiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 76 ILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred EEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 998877778888999988 77776566666776643
No 377
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=90.09 E-value=6.7 Score=30.62 Aligned_cols=91 Identities=21% Similarity=0.215 Sum_probs=59.9
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--C------CCCcEEEEEcchHHHhhhccCCccEE
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--L------DASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~------~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
|.-+ |+|.+-++++...+ ..+-+|+-...+++..+..+++-. . +..++.+ ..|..+.+. ..|+|
T Consensus 2 I~Vi-GaG~~G~AlA~~la--~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~----~ad~I 73 (157)
T PF01210_consen 2 IAVI-GAGNWGTALAALLA--DNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALE----DADII 73 (157)
T ss_dssp EEEE-SSSHHHHHHHHHHH--HCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHT----T-SEE
T ss_pred EEEE-CcCHHHHHHHHHHH--HcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhC----cccEE
Confidence 4556 77777665554333 345689999999987776665433 1 1235654 566666653 46999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
++--+.....++++.+.+.+++ +..++
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~-~~~ii 100 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKK-GQIII 100 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHT-T-EEE
T ss_pred EecccHHHHHHHHHHHhhccCC-CCEEE
Confidence 9998888889999999999986 54444
No 378
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=90.03 E-value=0.32 Score=45.47 Aligned_cols=99 Identities=13% Similarity=0.024 Sum_probs=60.3
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCC--hhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCcc
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRR--VEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREAD 113 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~--~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD 113 (211)
...+-++|+|+ .+|+|-+|.+|.. ..--|..|-.. +..+.+. ++ |+.. +.-|-.|..+....+||
T Consensus 362 ~~~~iRNVMDM-nAg~GGFAAAL~~----~~VWVMNVVP~~~~ntL~vI---ydRGLIG----~yhDWCE~fsTYPRTYD 429 (506)
T PF03141_consen 362 KWGRIRNVMDM-NAGYGGFAAALID----DPVWVMNVVPVSGPNTLPVI---YDRGLIG----VYHDWCEAFSTYPRTYD 429 (506)
T ss_pred cccceeeeeee-cccccHHHHHhcc----CCceEEEecccCCCCcchhh---hhcccch----hccchhhccCCCCcchh
Confidence 34456789999 8999998777753 23334333322 1112111 11 3311 12234444444468999
Q ss_pred EEEEcCCcC------cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 114 FVLIDCNLE------NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 114 ~VfiD~~~~------~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
+|-.|+-.. .....+-++-+.|||+|.+++-|++
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 998875333 4578888999999999998887753
No 379
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.03 E-value=1.4 Score=42.16 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=57.4
Q ss_pred ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEcCCcCcHH-
Q 041509 50 NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLIDCNLENHE- 125 (211)
Q Consensus 50 tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD~~~~~y~- 125 (211)
||.|-.+..+++.+...+-.++.||.||+..+.+++. ...++.||+.+ .+.+. -++.|.+++-.+..+-.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY------GYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------CCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 4567777788887766577999999999999888752 25689999864 44433 35789888766554322
Q ss_pred HHHHHHHhcCCCCcEEEE
Q 041509 126 GVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 126 ~~l~~~~~~L~pgG~viv 143 (211)
.....+. .+.|.-.+++
T Consensus 480 ~i~~~~r-~~~p~~~Iia 496 (601)
T PRK03659 480 KIVELCQ-QHFPHLHILA 496 (601)
T ss_pred HHHHHHH-HHCCCCeEEE
Confidence 2333333 3455544443
No 380
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=89.88 E-value=2.3 Score=35.06 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=51.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHH-----------Hhh
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQS-----------LLL 106 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e-----------~l~ 106 (211)
.+.+++|=. |+ +|..+..+++.+...+.+|+.++.+++..+...+.+. ....++.++..|..+ .+.
T Consensus 10 ~~~k~vlIt-G~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVT-GA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEe-CC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 356788888 64 5566677776665556799999999877665555554 223467777766531 111
Q ss_pred hccCCccEEEEcC
Q 041509 107 SHFREADFVLIDC 119 (211)
Q Consensus 107 ~l~~~fD~VfiD~ 119 (211)
...+++|.|+..+
T Consensus 88 ~~~~~id~vi~~A 100 (247)
T PRK08945 88 EQFGRLDGVLHNA 100 (247)
T ss_pred HHhCCCCEEEECC
Confidence 1136899998765
No 381
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=89.86 E-value=2.7 Score=38.18 Aligned_cols=95 Identities=21% Similarity=0.128 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-----C--------C-CCcEEEEEcchHHHhhhccCCccEEE
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-----L--------D-ASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-----~--------~-~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
|.||.+..+|..+...+-+|+.+|.+++.++..++... + . ..++++ ..+..+.+ ...|+||
T Consensus 7 GlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~-~~~~~~~~----~~advvi 81 (411)
T TIGR03026 7 GLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA-TTDYEDAI----RDADVII 81 (411)
T ss_pred CCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE-ECCHHHHH----hhCCEEE
Confidence 35667777777765556789999999988765543210 0 0 122332 23333332 3579999
Q ss_pred EcCCcC----------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 117 IDCNLE----------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 117 iD~~~~----------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+.-+.+ ......+.+.+.+++ |.+++......++
T Consensus 82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~-g~lvi~~STv~pg 125 (411)
T TIGR03026 82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRK-GATVVLESTVPPG 125 (411)
T ss_pred EEeCCCCCCCCCcChHHHHHHHHHHHHhcCC-CCEEEEeCcCCCC
Confidence 875432 245566777777876 5666644455555
No 382
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=89.85 E-value=3.3 Score=34.60 Aligned_cols=97 Identities=21% Similarity=0.186 Sum_probs=60.2
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEcCC
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLIDCN 120 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD~~ 120 (211)
++=+ | .|-.+..+|+.+...+-.|+.||.|++..+.+... .-....++||+.+ .|.+. -..+|.++....
T Consensus 3 iiIi-G--~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~----~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 3 IIII-G--AGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD----ELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred EEEE-C--CcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh----hcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 4445 4 45666777877776567999999999987764321 1246778888854 55554 468999998877
Q ss_pred cCcHHHHHHHHHhc-CCCCcEEEEEecC
Q 041509 121 LENHEGVLRAVQAG-NKPNGAVVVGYNA 147 (211)
Q Consensus 121 ~~~y~~~l~~~~~~-L~pgG~viv~dn~ 147 (211)
...-.-.+-.+... +...-.+.-+.|.
T Consensus 76 ~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 76 NDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 65443333333322 3333445544443
No 383
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=89.85 E-value=8 Score=34.22 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=54.2
Q ss_pred CCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cchHHHhhhccCCccEEE
Q 041509 39 NNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GDAQSLLLSHFREADFVL 116 (211)
Q Consensus 39 ~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l~~~fD~Vf 116 (211)
.+.++||-. | .+.|..++.+|++. +.+|+.++.+++....+.+.+ +. + .++. .+. +.+..+.+.+|+||
T Consensus 182 ~~g~~VlV~-G~G~vG~~avq~Ak~~---Ga~vi~~~~~~~~~~~~~~~~-Ga-~--~vi~~~~~-~~~~~~~~~~D~vi 252 (360)
T PLN02586 182 EPGKHLGVA-GLGGLGHVAVKIGKAF---GLKVTVISSSSNKEDEAINRL-GA-D--SFLVSTDP-EKMKAAIGTMDYII 252 (360)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHC---CCEEEEEeCCcchhhhHHHhC-CC-c--EEEcCCCH-HHHHhhcCCCCEEE
Confidence 356777777 5 45777777777775 568888887765433332222 21 1 1111 111 12222234689887
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+.-. ...++.+.+.|+++|.++.+-
T Consensus 253 -d~~g~--~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 253 -DTVSA--VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred -ECCCC--HHHHHHHHHHhcCCcEEEEeC
Confidence 54321 235666778889999887653
No 384
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=89.84 E-value=0.26 Score=45.28 Aligned_cols=63 Identities=21% Similarity=0.103 Sum_probs=52.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C-CC-CcEEEEEcchHHHhh
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L-DA-SHVEFVIGDAQSLLL 106 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~-~~-~~V~~~~gda~e~l~ 106 (211)
.++..|-|+| ||.|-.++.++. .+.+|++-|.+|++++.-+.|++ + .. .+|+++.-||.+.+.
T Consensus 248 k~gevv~D~F-aGvGPfa~Pa~k----K~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVF-AGVGPFALPAAK----KGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhh-cCcCccccchhh----cCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 3566788996 999998887764 36899999999999999999998 3 33 459999999999884
No 385
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=89.81 E-value=3.3 Score=33.45 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=27.2
Q ss_pred CCCeEEEE-ccccHHHHH--HHHHHHccCCCcEEEEEeCChhHHHH
Q 041509 40 NAQLMVVA-CANVANATT--LALAAAAHQTGGRVVCILRRVEEYKL 82 (211)
Q Consensus 40 ~~~~VLEi-~Gtg~G~st--l~la~a~~~~~g~v~tiE~~~~~~~~ 82 (211)
+++.|.=. +..|.|-+| ..||.++...+.+|.-||.|+..-..
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l 61 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVM 61 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhH
Confidence 34554444 124666654 45777776667799999999765443
No 386
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=89.60 E-value=6 Score=33.98 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=60.1
Q ss_pred hhCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccE
Q 041509 37 AGNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
...+.+.||-. |+ ..|..++.+|.+. +.+++.++.+++..+.+++..... +... +..+.+..+ +.+|+
T Consensus 159 ~~~~~~~vlI~-g~~g~~g~~~~~la~~~---g~~vi~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~v~~~-~~~d~ 228 (334)
T PRK13771 159 GVKKGETVLVT-GAGGGVGIHAIQVAKAL---GAKVIAVTSSESKAKIVSKYADYV---IVGS--KFSEEVKKI-GGADI 228 (334)
T ss_pred CCCCCCEEEEE-CCCccHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHh---cCch--hHHHHHHhc-CCCcE
Confidence 34456677776 54 7888888888875 678999999998888876541110 1111 222333333 46898
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++ |+... .....+.+.|+++|.++...
T Consensus 229 ~l-d~~g~---~~~~~~~~~l~~~G~~v~~g 255 (334)
T PRK13771 229 VI-ETVGT---PTLEESLRSLNMGGKIIQIG 255 (334)
T ss_pred EE-EcCCh---HHHHHHHHHHhcCCEEEEEe
Confidence 87 54322 24567777788899877654
No 387
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=89.53 E-value=8.4 Score=33.35 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=59.3
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCC-cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccE
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTG-GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADF 114 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~-g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~ 114 (211)
..+.++||-....+.|..++.+|++. + .+|+.++.+++..+.+++. +...-+.....+..+.+..+ ...+|+
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~---G~~~v~~~~~~~~~~~~~~~~--g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLY---SPSKIIMVDLDDNRLEVAKKL--GATHTVNSAKGDAIEQVLELTDGRGVDV 238 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHHh--CCCceeccccccHHHHHHHHhCCCCCCE
Confidence 34566766561356666777777765 4 6899999998887777642 22222333333333322222 357998
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
++ |+... ...++.+.+.|+++|.++..
T Consensus 239 vl-d~~g~--~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 239 VI-EAVGI--PATFELCQELVAPGGHIANV 265 (345)
T ss_pred EE-ECCCC--HHHHHHHHHhccCCcEEEEe
Confidence 87 54321 23567777888888887654
No 388
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=89.49 E-value=0.36 Score=42.04 Aligned_cols=105 Identities=14% Similarity=0.025 Sum_probs=73.0
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
..=|.+.+|+..... ...++++ |||-|-.+. ..+.-.+++.|++...+..|++. +...+..+|++
T Consensus 31 ~~Wp~v~qfl~~~~~---gsv~~d~-gCGngky~~------~~p~~~~ig~D~c~~l~~~ak~~-----~~~~~~~ad~l 95 (293)
T KOG1331|consen 31 APWPMVRQFLDSQPT---GSVGLDV-GCGNGKYLG------VNPLCLIIGCDLCTGLLGGAKRS-----GGDNVCRADAL 95 (293)
T ss_pred CccHHHHHHHhccCC---cceeeec-ccCCcccCc------CCCcceeeecchhhhhccccccC-----CCceeehhhhh
Confidence 444667777765533 5678999 999995321 11346789999998888777642 22278889998
Q ss_pred HHhhhccCCccEEEEcCCc------CcHHHHHHHHHhcCCCCcEEEE
Q 041509 103 SLLLSHFREADFVLIDCNL------ENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~------~~y~~~l~~~~~~L~pgG~viv 143 (211)
..... ..+||.+..=+-. ..-...++++.+.|+|||-..+
T Consensus 96 ~~p~~-~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 96 KLPFR-EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred cCCCC-CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 87543 7899998755422 2346789999999999998655
No 389
>PRK08655 prephenate dehydrogenase; Provisional
Probab=89.40 E-value=2.8 Score=38.64 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=56.8
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHH-HHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEY-KLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~-~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
+|.=| | |+|..+.+++.++...+.+|+.++.+++.. +.|++ . + ++ ...+..+. -...|+||+..+.
T Consensus 2 kI~II-G-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~-~-g----v~-~~~~~~e~----~~~aDvVIlavp~ 68 (437)
T PRK08655 2 KISII-G-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE-L-G----VE-YANDNIDA----AKDADIVIISVPI 68 (437)
T ss_pred EEEEE-e-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH-c-C----Ce-eccCHHHH----hccCCEEEEecCH
Confidence 35556 5 345666677777765456899999998764 33332 1 1 11 12333333 2457999998887
Q ss_pred CcHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 122 ENHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 122 ~~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
....+.++.+.+.++| |.+++ |..
T Consensus 69 ~~~~~vl~~l~~~l~~-~~iVi-Dvs 92 (437)
T PRK08655 69 NVTEDVIKEVAPHVKE-GSLLM-DVT 92 (437)
T ss_pred HHHHHHHHHHHhhCCC-CCEEE-Ecc
Confidence 7777888888888887 55554 543
No 390
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=89.39 E-value=10 Score=32.20 Aligned_cols=100 Identities=23% Similarity=0.155 Sum_probs=60.3
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
....++..||=. | .++|..++.+|++. +.+|++++.+++..+.+++ +. ...-+.....+..+.+..+ ...
T Consensus 138 ~~~~~~~~vlI~-g~~~~~g~~~~~la~~~---g~~v~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~ 211 (324)
T cd08244 138 ATLTPGDVVLVT-AAAGGLGSLLVQLAKAA---GATVVGAAGGPAKTALVRA-LG-ADVAVDYTRPDWPDQVREALGGGG 211 (324)
T ss_pred cCCCCCCEEEEE-cCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHH-cC-CCEEEecCCccHHHHHHHHcCCCC
Confidence 344556777777 6 57888888888875 6789999999988877754 22 2111211122333333222 246
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+++ |+-.. ...+.+.+.|+++|.++.+-
T Consensus 212 ~d~vl-~~~g~---~~~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 212 VTVVL-DGVGG---AIGRAALALLAPGGRFLTYG 241 (324)
T ss_pred ceEEE-ECCCh---HhHHHHHHHhccCcEEEEEe
Confidence 99997 44322 23466677788888877543
No 391
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.35 E-value=4.1 Score=35.18 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=62.1
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C--C-----CCcEEEEEcchHHHhhhccCCccE
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L--D-----ASHVEFVIGDAQSLLLSHFREADF 114 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~--~-----~~~V~~~~gda~e~l~~l~~~fD~ 114 (211)
+|.=| |+ |..+..++..+...+-.|+.++.+++..+..++... . . ...++. ..+..+. ....|+
T Consensus 3 kI~ii-G~--G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~D~ 74 (325)
T PRK00094 3 KIAVL-GA--GSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEA----LADADL 74 (325)
T ss_pred EEEEE-CC--CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHH----HhCCCE
Confidence 46666 65 566667766665546689999999988776665421 0 0 012322 2233333 246799
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
||+-.......+.++.+.+.+.++..++..-|.+.+
T Consensus 75 vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 75 ILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred EEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence 999877666677788888878775545545555654
No 392
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.29 E-value=2.2 Score=37.04 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=54.7
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCC--cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTG--GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~--g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
++|.=| |+|. .+..++.++...+ .+|+.+|.+++..+.+++. +... . ...+..+. ....|+|++..
T Consensus 7 ~~I~II-G~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~--g~~~--~-~~~~~~~~----~~~aDvViiav 74 (307)
T PRK07502 7 DRVALI-GIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARAREL--GLGD--R-VTTSAAEA----VKGADLVILCV 74 (307)
T ss_pred cEEEEE-eeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC--CCCc--e-ecCCHHHH----hcCCCEEEECC
Confidence 468888 7653 3444444443322 3899999999887776541 2111 1 12233332 24689999988
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEE
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv 143 (211)
.......+++.+.+.++++ .+++
T Consensus 75 p~~~~~~v~~~l~~~l~~~-~iv~ 97 (307)
T PRK07502 75 PVGASGAVAAEIAPHLKPG-AIVT 97 (307)
T ss_pred CHHHHHHHHHHHHhhCCCC-CEEE
Confidence 8766677788888878874 4443
No 393
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.24 E-value=4.7 Score=34.82 Aligned_cols=93 Identities=18% Similarity=0.143 Sum_probs=55.6
Q ss_pred CCCeEEEEcccc-HHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcc---hHHHhhhccCCccE
Q 041509 40 NAQLMVVACANV-ANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGD---AQSLLLSHFREADF 114 (211)
Q Consensus 40 ~~~~VLEi~Gtg-~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd---a~e~l~~l~~~fD~ 114 (211)
+.++||-. |+| .|..++.+|++. +. +++.++.+++..+.+++. . . + .++..+ ..+... ..+.+|+
T Consensus 165 ~~~~VLI~-g~g~vG~~~~~lak~~---G~~~v~~~~~s~~~~~~~~~~-g-~-~--~vi~~~~~~~~~~~~-~~~~vd~ 234 (339)
T cd08232 165 AGKRVLVT-GAGPIGALVVAAARRA---GAAEIVATDLADAPLAVARAM-G-A-D--ETVNLARDPLAAYAA-DKGDFDV 234 (339)
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHHc---CCcEEEEECCCHHHHHHHHHc-C-C-C--EEEcCCchhhhhhhc-cCCCccE
Confidence 56778777 554 477777777765 44 799999988888766552 2 1 1 122111 111111 1345899
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++--.... ..++.+.+.|+++|.++...
T Consensus 235 vld~~g~~---~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 235 VFEASGAP---AALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEECCCCH---HHHHHHHHHHhcCCEEEEEe
Confidence 87543322 34666777788889887653
No 394
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=89.20 E-value=7.9 Score=33.44 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=58.5
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCc
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREA 112 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~f 112 (211)
+...+..+||-. |+| +|..++.+|++. +.+ ++.+..+++..+.+++ + +...-+........++.... ...+
T Consensus 155 ~~~~~~~~vlI~-g~g~~g~~~~~lA~~~---G~~~v~~~~~~~~~~~~l~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 155 AGITLGDTVVVI-GAGTIGLLAIQWLKIL---GAKRVIAVDIDDEKLAVARE-L-GADDTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHH-c-CCCEEecCccccHHHHHHHhCCCCC
Confidence 344566788888 654 488888888875 444 9999988887776643 2 22111221111222222222 2459
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+++-.... ...+..+.+.|+++|.++...
T Consensus 229 d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 229 DLVIEAAGS---PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 988743222 234566677778888877654
No 395
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=89.18 E-value=9.7 Score=32.83 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=60.4
Q ss_pred hhCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+..+||-. |+ ++|..++.+|++. +.+|+.+..+++..+.+++ +. ...-+.....+..+.+.++ .+.+
T Consensus 162 ~~~~~~~vlV~-g~~~~vg~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~g-~~~v~~~~~~~~~~~~~~~~~~~~v 235 (341)
T cd08297 162 GLKPGDWVVIS-GAGGGLGHLGVQYAKAM---GLRVIAIDVGDEKLELAKE-LG-ADAFVDFKKSDDVEAVKELTGGGGA 235 (341)
T ss_pred CCCCCCEEEEE-CCCchHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHH-cC-CcEEEcCCCccHHHHHHHHhcCCCC
Confidence 34556778777 54 4888888888876 5689999999988777743 32 1111111111333333333 3579
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|.++-+.... .....+.+.++++|.++.+
T Consensus 236 d~vl~~~~~~---~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 236 HAVVVTAVSA---AAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred CEEEEcCCch---HHHHHHHHHhhcCCEEEEe
Confidence 9988655433 3455666677788887764
No 396
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.18 E-value=1.6 Score=40.81 Aligned_cols=100 Identities=14% Similarity=0.018 Sum_probs=57.9
Q ss_pred eEEEEccccHHHHHHHHHHHccCC--CcEEEEEeCChhHHHHHHHHhc-----CCC-------C-cEEEEEcchHHHhhh
Q 041509 43 LMVVACANVANATTLALAAAAHQT--GGRVVCILRRVEEYKLSKKILG-----LDA-------S-HVEFVIGDAQSLLLS 107 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~--~g~v~tiE~~~~~~~~Ar~~~~-----~~~-------~-~V~~~~gda~e~l~~ 107 (211)
+|.-+ |+ ||.++.+|..+... +-+|+++|.+++.++..++... ++. . +.+ ...|..+.+
T Consensus 3 ~I~Vi-G~--GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~~i-- 76 (473)
T PLN02353 3 KICCI-GA--GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEKHV-- 76 (473)
T ss_pred EEEEE-CC--CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHHHH--
Confidence 35556 54 55556655555432 4679999999999877654321 110 0 111 122222221
Q ss_pred ccCCccEEEEcC--Cc----------C---cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 108 HFREADFVLIDC--NL----------E---NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 108 l~~~fD~VfiD~--~~----------~---~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
...|++|+.- +. . ......+.+.+.|++ |.++|.....++|
T Consensus 77 --~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~-~~lVv~~STvp~G 132 (473)
T PLN02353 77 --AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS-DKIVVEKSTVPVK 132 (473)
T ss_pred --hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC-CcEEEEeCCCCCC
Confidence 3468888742 11 1 236677888888886 6777778777777
No 397
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.17 E-value=2.6 Score=37.21 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=63.1
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cC-CccEEEEcC
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FR-EADFVLIDC 119 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~-~fD~VfiD~ 119 (211)
-+++|+| ||+|-..+-+-.+- ---+.++|++|.+.+.-+.|+.. -.++.+|..+..... .+ .+|++.-..
T Consensus 4 ~~~idLF-sG~GG~~lGf~~ag---f~~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLF-AGIGGLSLGFEEAG---FEIVFANEIDPPAVATYKANFPH----GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeec-cCCchHHHHHHhcC---CeEEEEEecCHHHHHHHHHhCCC----CceeechHhhcChhhccccCCCEEEeCC
Confidence 4689996 88888766665542 24679999999999999988762 456677777665432 22 788886531
Q ss_pred --------Cc-------C--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 120 --------NL-------E--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 120 --------~~-------~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+ + .+.++.+.+.. ++| .+++.+|+-
T Consensus 76 PCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~-~~P--~~fv~ENV~ 118 (328)
T COG0270 76 PCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQ-LRP--KFFVLENVK 118 (328)
T ss_pred CCcchhhcCcccCCcCccceeeHHHHHHHHh-hCC--CEEEEecCc
Confidence 11 1 24555555554 566 456669863
No 398
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.15 E-value=6.1 Score=36.32 Aligned_cols=87 Identities=13% Similarity=0.017 Sum_probs=53.8
Q ss_pred CCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
...++|+-+ |+| +|...+.+++++ +.+|+.+|.+|...+.|++. |. +.. +..+.+ ...|+||.
T Consensus 200 l~GktVvVi-G~G~IG~~va~~ak~~---Ga~ViV~d~d~~R~~~A~~~--G~----~~~--~~~e~v----~~aDVVI~ 263 (413)
T cd00401 200 IAGKVAVVA-GYGDVGKGCAQSLRGQ---GARVIVTEVDPICALQAAME--GY----EVM--TMEEAV----KEGDIFVT 263 (413)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHC---CCEEEEEECChhhHHHHHhc--CC----EEc--cHHHHH----cCCCEEEE
Confidence 357889999 766 355555555554 67899999999988888652 22 111 122322 35798875
Q ss_pred cCCcCcHHHHHHH-HHhcCCCCcEEEEE
Q 041509 118 DCNLENHEGVLRA-VQAGNKPNGAVVVG 144 (211)
Q Consensus 118 D~~~~~y~~~l~~-~~~~L~pgG~viv~ 144 (211)
.... ...+.. ..+.+++||.++.+
T Consensus 264 atG~---~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 264 TTGN---KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred CCCC---HHHHHHHHHhcCCCCcEEEEe
Confidence 4432 234444 47788887766544
No 399
>PRK07102 short chain dehydrogenase; Provisional
Probab=89.07 E-value=2.5 Score=34.76 Aligned_cols=76 Identities=22% Similarity=0.108 Sum_probs=49.9
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHH------hhhccCCccE
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSL------LLSHFREADF 114 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~------l~~l~~~fD~ 114 (211)
++++-+ |+ +|..+..+++.+-..+.+|+.++.+++..+...+.+. ....+++++..|..+. +......+|.
T Consensus 2 ~~vlIt-Ga-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 2 KKILII-GA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred cEEEEE-cC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 467777 53 4556677777766557799999999876655444444 2245788998886543 2222346799
Q ss_pred EEEcC
Q 041509 115 VLIDC 119 (211)
Q Consensus 115 VfiD~ 119 (211)
++..+
T Consensus 80 vv~~a 84 (243)
T PRK07102 80 VLIAV 84 (243)
T ss_pred EEECC
Confidence 99754
No 400
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.94 E-value=5 Score=35.85 Aligned_cols=97 Identities=19% Similarity=0.105 Sum_probs=58.2
Q ss_pred CCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEE-EcchHHHhh-hccCCccEE
Q 041509 39 NNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFV-IGDAQSLLL-SHFREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~-~gda~e~l~-~l~~~fD~V 115 (211)
.++++|--+ | .|.|-.++-+|.|+ +.+||.|+.++..-+.|-+.+. ....|.+. ..|..+.+. .++.-.|-+
T Consensus 180 ~pG~~vgI~-GlGGLGh~aVq~AKAM---G~rV~vis~~~~kkeea~~~LG-Ad~fv~~~~d~d~~~~~~~~~dg~~~~v 254 (360)
T KOG0023|consen 180 GPGKWVGIV-GLGGLGHMAVQYAKAM---GMRVTVISTSSKKKEEAIKSLG-ADVFVDSTEDPDIMKAIMKTTDGGIDTV 254 (360)
T ss_pred CCCcEEEEe-cCcccchHHHHHHHHh---CcEEEEEeCCchhHHHHHHhcC-cceeEEecCCHHHHHHHHHhhcCcceee
Confidence 455665444 3 56999999999998 6899999999877777766554 12334443 333333222 223334444
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..=+. .-++.+..+||++|.++..-
T Consensus 255 ~~~a~-----~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 255 SNLAE-----HALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred eeccc-----cchHHHHHHhhcCCEEEEEe
Confidence 31112 23555566677899987754
No 401
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.86 E-value=3.3 Score=37.58 Aligned_cols=94 Identities=20% Similarity=0.217 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-----CCC-----CcEEEEEc-chHHHhhhccCCccEEEEcC
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-----LDA-----SHVEFVIG-DAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-----~~~-----~~V~~~~g-da~e~l~~l~~~fD~VfiD~ 119 (211)
|.||.++-+|..+.. +-+|+++|++++.++..++... ++. ...++... |..+. ....|+|++.-
T Consensus 7 GlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~----~~~ad~vii~V 81 (388)
T PRK15057 7 GTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA----YRDADYVIIAT 81 (388)
T ss_pred CCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh----hcCCCEEEEeC
Confidence 456666666655543 5689999999999888876432 100 12223221 12222 24579999864
Q ss_pred CcC-----------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 120 NLE-----------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 120 ~~~-----------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+.. ...+.++.+.+ +++ |.++|.....++|
T Consensus 82 pt~~~~k~~~~dl~~v~~v~~~i~~-~~~-g~lVV~~STv~pg 122 (388)
T PRK15057 82 PTDYDPKTNYFNTSSVESVIKDVVE-INP-YAVMVIKSTVPVG 122 (388)
T ss_pred CCCCccCCCCcChHHHHHHHHHHHh-cCC-CCEEEEeeecCCc
Confidence 322 22455666766 666 6677766667776
No 402
>PRK06949 short chain dehydrogenase; Provisional
Probab=88.86 E-value=4.3 Score=33.45 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=52.8
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~ 110 (211)
..++||-+ | ++|..+..+++.+...+.+|+.+..+++.++.....+.....++.++..|..+. +.. ..+
T Consensus 8 ~~k~ilIt-G-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 8 EGKVALVT-G-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCEEEEE-C-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 45788888 6 455566777776665577899999999887666665553334688888886432 111 135
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
++|.++..+.
T Consensus 86 ~~d~li~~ag 95 (258)
T PRK06949 86 TIDILVNNSG 95 (258)
T ss_pred CCCEEEECCC
Confidence 7899887654
No 403
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=88.83 E-value=7.7 Score=34.23 Aligned_cols=102 Identities=12% Similarity=0.100 Sum_probs=60.4
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccE
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADF 114 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~ 114 (211)
...+.++||-. |+ +.|..++.+|++.. ..++++++.+++..+.+++. . ...-+.....+..+.+..+ ...+|+
T Consensus 183 ~~~~g~~vlI~-g~g~vG~~~~~la~~~G--~~~v~~~~~~~~k~~~~~~~-g-~~~~i~~~~~~~~~~v~~~~~~~~d~ 257 (365)
T cd08278 183 KPRPGSSIAVF-GAGAVGLAAVMAAKIAG--CTTIIAVDIVDSRLELAKEL-G-ATHVINPKEEDLVAAIREITGGGVDY 257 (365)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHc-C-CcEEecCCCcCHHHHHHHHhCCCCcE
Confidence 34556788887 54 56887888888763 23799999999888877652 2 1111111111222222222 457998
Q ss_pred EEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 115 VLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 115 VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|+--.... ..+..+.+.|+++|.++....
T Consensus 258 vld~~g~~---~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 258 ALDTTGVP---AVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred EEECCCCc---HHHHHHHHHhccCCEEEEeCc
Confidence 87433222 346667777788888776543
No 404
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.81 E-value=5.5 Score=35.57 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=60.3
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHHhhhc-cCC
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSLLLSH-FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~l~~l-~~~ 111 (211)
++..++..+.-. |. +.|.+.+.-|++.. .+++++||+|++..+.|++.=. ....+ ++ ...+.|.+.++ ++.
T Consensus 188 Akv~~GstvAVf-GLG~VGLav~~Gaka~G--AsrIIgvDiN~~Kf~~ak~fGaTe~iNp~-d~-~~~i~evi~EmTdgG 262 (375)
T KOG0022|consen 188 AKVEPGSTVAVF-GLGGVGLAVAMGAKAAG--ASRIIGVDINPDKFEKAKEFGATEFINPK-DL-KKPIQEVIIEMTDGG 262 (375)
T ss_pred cccCCCCEEEEE-ecchHHHHHHHhHHhcC--cccEEEEecCHHHHHHHHhcCcceecChh-hc-cccHHHHHHHHhcCC
Confidence 455667777766 54 45666666666653 5899999999999999987533 11111 11 22567777665 788
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCC-cEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPN-GAVV 142 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pg-G~vi 142 (211)
+|+-|=..... +.+++++...+.| |.-+
T Consensus 263 vDysfEc~G~~---~~m~~al~s~h~GwG~sv 291 (375)
T KOG0022|consen 263 VDYSFECIGNV---STMRAALESCHKGWGKSV 291 (375)
T ss_pred ceEEEEecCCH---HHHHHHHHHhhcCCCeEE
Confidence 99998543322 3344444444445 4433
No 405
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=88.78 E-value=2.5 Score=37.48 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=66.1
Q ss_pred HHHHH--hhCCCCeEEEEcc-ccHHHHHHHH---HHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch----
Q 041509 32 ISALA--AGNNAQLMVVACA-NVANATTLAL---AAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA---- 101 (211)
Q Consensus 32 L~~l~--~~~~~~~VLEi~G-tg~G~stl~l---a~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda---- 101 (211)
|..+. .+.+..++.||+| .|+|-+++++ +.+. ..++++.=||.+...-....+.+.-..+++.+..-+.
T Consensus 43 LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~-~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~ 121 (321)
T TIGR02012 43 LDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQA 121 (321)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHH
Confidence 55554 4678888999944 7899998865 3333 3477887777765443332222221123444444332
Q ss_pred HHHhhhc--cCCccEEEEcCCcCcH---------------------HHHHHHHHhcCCCCcEEEEEecCC
Q 041509 102 QSLLLSH--FREADFVLIDCNLENH---------------------EGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 102 ~e~l~~l--~~~fD~VfiD~~~~~y---------------------~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+.+..+ .+.+|+|++|.-...+ .+.+..+...++..|+.+++-|-.
T Consensus 122 l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQv 191 (321)
T TIGR02012 122 LEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQI 191 (321)
T ss_pred HHHHHHHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 2333322 4689999999622100 134455556666778877777754
No 406
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.65 E-value=0.91 Score=39.21 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=55.2
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---------CCC---------CcEEEEEcchHH
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---------LDA---------SHVEFVIGDAQS 103 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---------~~~---------~~V~~~~gda~e 103 (211)
++|-=| |+| ..+..+|..+...+-+|+.+|.+++.++.+++.+. +.. .++.+ ..+. +
T Consensus 5 ~~V~vI-G~G--~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~-~ 79 (295)
T PLN02545 5 KKVGVV-GAG--QMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNL-E 79 (295)
T ss_pred CEEEEE-CCC--HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCH-H
Confidence 457777 664 44455555544446799999999999887665432 110 11221 1222 2
Q ss_pred HhhhccCCccEEEEcCC--cCcHHHHHHHHHhcCCCCcEEEE
Q 041509 104 LLLSHFREADFVLIDCN--LENHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~--~~~y~~~l~~~~~~L~pgG~viv 143 (211)
. -..-|+|+.... ......+++.+.+.++| +.+++
T Consensus 80 ~----~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~-~~il~ 116 (295)
T PLN02545 80 E----LRDADFIIEAIVESEDLKKKLFSELDRICKP-SAILA 116 (295)
T ss_pred H----hCCCCEEEEcCccCHHHHHHHHHHHHhhCCC-CcEEE
Confidence 2 245799998765 33456778888887877 55554
No 407
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=88.61 E-value=1.6 Score=39.31 Aligned_cols=47 Identities=11% Similarity=-0.062 Sum_probs=39.3
Q ss_pred CCeEEEEccccHHHHHHHHHHHccC------CCcEEEEEeCChhHHHHHHHHhc
Q 041509 41 AQLMVVACANVANATTLALAAAAHQ------TGGRVVCILRRVEEYKLSKKILG 88 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~------~~g~v~tiE~~~~~~~~Ar~~~~ 88 (211)
+-.++|| |.|.|..+.-+.+.+.. ...++.-||++|+..+.-+++++
T Consensus 78 ~~~lvEi-GaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 78 PLKLVEI-GAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CceEEEe-CCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 4569999 99999998887776632 25789999999999999998887
No 408
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.60 E-value=0.82 Score=39.41 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=58.2
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---------C-C---------CCcEEEEEcchH
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---------L-D---------ASHVEFVIGDAQ 102 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---------~-~---------~~~V~~~~gda~ 102 (211)
++|.-| |+|+=-+++ |..+...+-+|+.+|.+++.++.+++.++ + . ..++++ ..|..
T Consensus 4 ~kIaVi-GaG~mG~~i--A~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~ 79 (287)
T PRK08293 4 KNVTVA-GAGVLGSQI--AFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLA 79 (287)
T ss_pred cEEEEE-CCCHHHHHH--HHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHH
Confidence 467778 776433333 33333336789999999999888876642 0 1 023332 23333
Q ss_pred HHhhhccCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 103 SLLLSHFREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 103 e~l~~l~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
+.+ ..-|+|+....-. ....+++.+.+.+.+ +.++ ++|..
T Consensus 80 ~a~----~~aDlVieavpe~~~~k~~~~~~l~~~~~~-~~ii-~sntS 121 (287)
T PRK08293 80 EAV----KDADLVIEAVPEDPEIKGDFYEELAKVAPE-KTIF-ATNSS 121 (287)
T ss_pred HHh----cCCCEEEEeccCCHHHHHHHHHHHHhhCCC-CCEE-EECcc
Confidence 332 4579999876533 356778888887765 5555 35543
No 409
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=88.55 E-value=6.2 Score=27.75 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=49.7
Q ss_pred EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 70 VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 70 v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|.-+|-++...+..++.+....-..-....+..+.+..+ ...||+|++|...+ +..++++.+...- |...+++.-
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~-~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQIN-PSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHT-TTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeecccccccccccccccc-ccccEEEec
Confidence 456899999999999888821111233566666666544 56899999997544 5567777776654 455555544
No 410
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=88.48 E-value=2.8 Score=34.35 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=51.2
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh---------hhccCCc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL---------LSHFREA 112 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l---------~~l~~~f 112 (211)
+++|=. | ++|+.+..+++.+...+.+|+.++.+++..+.....+.....++.++.+|..+.- ....++.
T Consensus 2 ~~vlIt-G-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 2 KTALVT-G-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CEEEEc-C-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 456666 5 4677778888777655779999999987766665555433456888888865421 1113568
Q ss_pred cEEEEcC
Q 041509 113 DFVLIDC 119 (211)
Q Consensus 113 D~VfiD~ 119 (211)
|.|+..+
T Consensus 80 d~vi~~a 86 (255)
T TIGR01963 80 DILVNNA 86 (255)
T ss_pred CEEEECC
Confidence 9998765
No 411
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.29 E-value=4.3 Score=37.11 Aligned_cols=95 Identities=22% Similarity=0.219 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-----CC---------CCcEEEEEcchHHHhhhccCCccEEE
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-----LD---------ASHVEFVIGDAQSLLLSHFREADFVL 116 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-----~~---------~~~V~~~~gda~e~l~~l~~~fD~Vf 116 (211)
|+||.++-.+..+.+.+-.|+++|+|++.++..++... ++ ..|.+| ..|..+.+ ...|++|
T Consensus 7 GtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f-Ttd~~~a~----~~adv~f 81 (414)
T COG1004 7 GTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF-TTDYEEAV----KDADVVF 81 (414)
T ss_pred CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE-EcCHHHHH----hcCCEEE
Confidence 45666665554444557899999999999887765542 11 112333 22333332 3468888
Q ss_pred EcCCc----------CcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 117 IDCNL----------ENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 117 iD~~~----------~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
|.-.. +......+.+.+.++ +..++|.....+.|
T Consensus 82 IavgTP~~~dg~aDl~~V~ava~~i~~~~~-~~~vvV~KSTVPvG 125 (414)
T COG1004 82 IAVGTPPDEDGSADLSYVEAVAKDIGEILD-GKAVVVIKSTVPVG 125 (414)
T ss_pred EEcCCCCCCCCCccHHHHHHHHHHHHhhcC-CCeEEEEcCCCCCC
Confidence 85321 112556666777675 34777777777776
No 412
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=88.25 E-value=3 Score=35.71 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=52.0
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH--hhhccCCccEEE
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL--LLSHFREADFVL 116 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~--l~~l~~~fD~Vf 116 (211)
.++||-. | |+|+.+.++++.+...+-+|+++..++........... +...+++++.+|..+. +......+|.||
T Consensus 4 ~~~ilVt-G-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 4 GKVVCVT-G-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCEEEEE-C-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 4678877 4 58999999998887667789888887654332222211 2235799999998653 223345689998
Q ss_pred EcCC
Q 041509 117 IDCN 120 (211)
Q Consensus 117 iD~~ 120 (211)
.-+.
T Consensus 82 h~A~ 85 (322)
T PLN02662 82 HTAS 85 (322)
T ss_pred EeCC
Confidence 7653
No 413
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.19 E-value=2.3 Score=40.95 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=49.9
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHH--Hhhhc-cCCccEEEEc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQS--LLLSH-FREADFVLID 118 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e--~l~~l-~~~fD~VfiD 118 (211)
++|+=+ | .|-.+-.+++.+...+-.++.||.|++.++.+++. ...++.||+.+ .+.+. -++.|.+++.
T Consensus 401 ~~vII~-G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 401 PRVIIA-G--FGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred CcEEEE-e--cChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 455545 4 45666667777665466899999999999988752 25689999864 44432 3578988877
Q ss_pred CCcC
Q 041509 119 CNLE 122 (211)
Q Consensus 119 ~~~~ 122 (211)
.+..
T Consensus 472 ~~d~ 475 (621)
T PRK03562 472 IDDP 475 (621)
T ss_pred eCCH
Confidence 6544
No 414
>PRK08324 short chain dehydrogenase; Validated
Probab=88.12 E-value=8.1 Score=37.52 Aligned_cols=77 Identities=19% Similarity=0.118 Sum_probs=49.6
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhhc---cCC
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLSH---FRE 111 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~l---~~~ 111 (211)
.+.||-+ |+ +|..+..+++.+...+.+|+.++.+++..+.+.+.+... .++.++..|..+. +... .++
T Consensus 422 gk~vLVT-Ga-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 422 GKVALVT-GA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCEEEEe-cC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4678877 64 333445555555545789999999998776666555422 5688888875331 1111 357
Q ss_pred ccEEEEcCC
Q 041509 112 ADFVLIDCN 120 (211)
Q Consensus 112 fD~VfiD~~ 120 (211)
+|.||..+.
T Consensus 499 iDvvI~~AG 507 (681)
T PRK08324 499 VDIVVSNAG 507 (681)
T ss_pred CCEEEECCC
Confidence 999998764
No 415
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=88.06 E-value=9.3 Score=29.89 Aligned_cols=98 Identities=17% Similarity=0.102 Sum_probs=52.4
Q ss_pred cccHHHHHHH--HHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEc----chHHHh----h-hccCCccEEE
Q 041509 49 ANVANATTLA--LAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIG----DAQSLL----L-SHFREADFVL 116 (211)
Q Consensus 49 Gtg~G~stl~--la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~g----da~e~l----~-~l~~~fD~Vf 116 (211)
-+|+|-+|+. ++..+...+.+|..++.|+......++... .....+.+... |..+.+ . .....+|+|+
T Consensus 8 ~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 87 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFDVVI 87 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 4788888775 344444445678888877643322221111 11123444332 333222 1 1256899999
Q ss_pred EcCCcCc-----HHHHHHHHHhcCCCCcEEEEEec
Q 041509 117 IDCNLEN-----HEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 117 iD~~~~~-----y~~~l~~~~~~L~pgG~viv~dn 146 (211)
+|..... ....+..+.+.+.+.+.++|++.
T Consensus 88 iDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~ 122 (173)
T cd03115 88 VDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDA 122 (173)
T ss_pred EECcccchhhHHHHHHHHHHHhhcCCCeEEEEEEC
Confidence 9987542 23333444444567788888774
No 416
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=88.00 E-value=4.5 Score=37.42 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=56.9
Q ss_pred CCCeEEEEcc-ccHHHHHHH--HHHHccCCCcEEEEEeCChh---HHHHHHHHhcCCCCcEEEEE----cchHHHhhhc-
Q 041509 40 NAQLMVVACA-NVANATTLA--LAAAAHQTGGRVVCILRRVE---EYKLSKKILGLDASHVEFVI----GDAQSLLLSH- 108 (211)
Q Consensus 40 ~~~~VLEi~G-tg~G~stl~--la~a~~~~~g~v~tiE~~~~---~~~~Ar~~~~~~~~~V~~~~----gda~e~l~~l- 108 (211)
+|..|+=+ | +|+|-+|.. ||..+...+-+|.-|+.|.. ..++.+...... .+.+.. .|+.+.+...
T Consensus 94 ~p~vI~lv-G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~--gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLV-GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKI--GVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHc--CCcEEecCCccCHHHHHHHHH
Confidence 35566666 5 888888665 66666554557766766653 222233322211 122322 3433333211
Q ss_pred --cCCccEEEEcCCcCcH--HHH---HHHHHhcCCCCcEEEEEec
Q 041509 109 --FREADFVLIDCNLENH--EGV---LRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 109 --~~~fD~VfiD~~~~~y--~~~---l~~~~~~L~pgG~viv~dn 146 (211)
...+|+|++|.+.... .+. +..+...+.|...++++|-
T Consensus 171 ~~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda 215 (437)
T PRK00771 171 EKFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDA 215 (437)
T ss_pred HHhhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEec
Confidence 2456999999875432 233 4445555678777877774
No 417
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=87.96 E-value=5.4 Score=34.59 Aligned_cols=88 Identities=10% Similarity=0.062 Sum_probs=56.6
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCc
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNLEN 123 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~ 123 (211)
|-=| |+ |..+..|+..+...+-+|+..|.+++..+.+++. +.. ...+..+.... ....|+||+--+...
T Consensus 3 Ig~I-Gl--G~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~--g~~-----~~~s~~~~~~~-~~~~dvIi~~vp~~~ 71 (298)
T TIGR00872 3 LGLI-GL--GRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKED--RTT-----GVANLRELSQR-LSAPRVVWVMVPHGI 71 (298)
T ss_pred EEEE-cc--hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc--CCc-----ccCCHHHHHhh-cCCCCEEEEEcCchH
Confidence 4445 54 6666677777766567899999999887766542 110 01233343322 245799998876666
Q ss_pred HHHHHHHHHhcCCCCcEEEE
Q 041509 124 HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 124 y~~~l~~~~~~L~pgG~viv 143 (211)
..+.++.+.+.|++| .+++
T Consensus 72 ~~~v~~~l~~~l~~g-~ivi 90 (298)
T TIGR00872 72 VDAVLEELAPTLEKG-DIVI 90 (298)
T ss_pred HHHHHHHHHhhCCCC-CEEE
Confidence 677888888888874 4544
No 418
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=87.91 E-value=12 Score=29.83 Aligned_cols=111 Identities=12% Similarity=0.039 Sum_probs=65.2
Q ss_pred CChhHHHHHHHHHhh--CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcch
Q 041509 24 KEPNEAEFISALAAG--NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDA 101 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~--~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda 101 (211)
-+.++++.|...+.. .+..+|+=| ||=+-|.++.- ......+++-.|.|........+ ...+.-.+.
T Consensus 7 Ys~~T~~~l~~~l~~~~~~~~~iacl-stPsl~~~l~~---~~~~~~~~~Lle~D~RF~~~~~~-------~F~fyD~~~ 75 (162)
T PF10237_consen 7 YSDETAEFLARELLDGALDDTRIACL-STPSLYEALKK---ESKPRIQSFLLEYDRRFEQFGGD-------EFVFYDYNE 75 (162)
T ss_pred cCHHHHHHHHHHHHHhcCCCCEEEEE-eCcHHHHHHHh---hcCCCccEEEEeecchHHhcCCc-------ceEECCCCC
Confidence 456677666655544 345789999 78777754433 11236789999999765542211 111222222
Q ss_pred -HHHhhhccCCccEEEEcCCcC---cHHHHHHHHHhcCCCCcEEEEEe
Q 041509 102 -QSLLLSHFREADFVLIDCNLE---NHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 102 -~e~l~~l~~~fD~VfiD~~~~---~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.++...+.++||+|++|.+.- -...+.+.+.-++++++.++++-
T Consensus 76 p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 76 PEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred hhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEec
Confidence 333334568999999999862 12333455555567767777643
No 419
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.90 E-value=1.4 Score=40.00 Aligned_cols=73 Identities=11% Similarity=0.030 Sum_probs=52.2
Q ss_pred eCChhHHHHHHHHhc---CCCCcEEEEEcchHHHhhhc-cCCccEEEE-cC----CcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 74 LRRVEEYKLSKKILG---LDASHVEFVIGDAQSLLLSH-FREADFVLI-DC----NLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 74 E~~~~~~~~Ar~~~~---~~~~~V~~~~gda~e~l~~l-~~~fD~Vfi-D~----~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+..|..+. ++|++ ...++|++++++..+.+.+. .+++|.+.+ |. +.+.+.+.++.+.+.++|||.|+.
T Consensus 256 ~~~P~YL~--~e~f~~lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~- 332 (380)
T PF11899_consen 256 DCCPPYLR--PENFEALRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW- 332 (380)
T ss_pred CCCChhhc--HhHHHHHhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE-
Confidence 55554332 44444 22489999999999999876 689998765 53 345778899999999999887765
Q ss_pred ecCCC
Q 041509 145 YNAFR 149 (211)
Q Consensus 145 dn~~~ 149 (211)
-++..
T Consensus 333 Rsa~~ 337 (380)
T PF11899_consen 333 RSAAV 337 (380)
T ss_pred eeCCC
Confidence 44443
No 420
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.84 E-value=6.9 Score=36.97 Aligned_cols=125 Identities=16% Similarity=0.192 Sum_probs=70.3
Q ss_pred CCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEE---------------EEcchH
Q 041509 39 NNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEF---------------VIGDAQ 102 (211)
Q Consensus 39 ~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~---------------~~gda~ 102 (211)
.++.+|+-+ |+| +|..++.++.++ +..|+.+|.+++..+.+++ +. .+.+++ ...+..
T Consensus 162 vp~akVlVi-GaG~iGl~Aa~~ak~l---GA~V~v~d~~~~rle~a~~-lG--a~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVI-GAGVAGLAAIGAANSL---GAIVRAFDTRPEVKEQVQS-MG--AEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHH-cC--CeEEeccccccccccccceeecCHHHH
Confidence 467899999 665 467777777775 5679999999998888876 33 111111 111111
Q ss_pred H----HhhhccCCccEEEEcC---CcCcHHHHHHHHHhcCCCCcEEEEEecCCCCC-ce--ecCCCcEEEeecCCcEEEE
Q 041509 103 S----LLLSHFREADFVLIDC---NLENHEGVLRAVQAGNKPNGAVVVGYNAFRKG-SW--RSSGSKSQLLPIGEGLLVT 172 (211)
Q Consensus 103 e----~l~~l~~~fD~VfiD~---~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~-~~--~~~~~~~v~lpig~Gl~v~ 172 (211)
+ .+++....+|+|+-.. .++.-.=..++..+.++|| .++| |-...+| .. ..|. . +.-..+|+.+.
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG-svIV-DlA~d~GGn~E~t~p~--~-~~~~~~GV~~~ 309 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG-SVIV-DLAAEQGGNCEYTKPG--E-VYTTENQVKVI 309 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC-CEEE-EeeeCCCCCEEEecCc--e-EEEecCCEEEE
Confidence 1 1222246799997655 2221112456667778885 4544 6555554 32 2232 1 11225567665
Q ss_pred EEe
Q 041509 173 RIA 175 (211)
Q Consensus 173 ~~~ 175 (211)
-..
T Consensus 310 gv~ 312 (511)
T TIGR00561 310 GYT 312 (511)
T ss_pred eeC
Confidence 543
No 421
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.82 E-value=1.6 Score=37.61 Aligned_cols=93 Identities=12% Similarity=0.139 Sum_probs=55.1
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-----C----CC---------CcEEEEEcchHH
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-----L----DA---------SHVEFVIGDAQS 103 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-----~----~~---------~~V~~~~gda~e 103 (211)
++|.=| |+ |..+..+|..+...+-+|+.+|.+++.++.++++.. + .. .++++ ..+..+
T Consensus 2 ~~V~VI-G~--G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 77 (288)
T PRK09260 2 EKLVVV-GA--GVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA 77 (288)
T ss_pred cEEEEE-Cc--cHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH
Confidence 356667 66 444455555544446789999999999988876532 1 00 11222 223323
Q ss_pred HhhhccCCccEEEEcCCcCc--HHHHHHHHHhcCCCCcEEEE
Q 041509 104 LLLSHFREADFVLIDCNLEN--HEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~~~--y~~~l~~~~~~L~pgG~viv 143 (211)
. -...|+|+..-.... ...++..+.+.++| +.+++
T Consensus 78 ~----~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~-~~il~ 114 (288)
T PRK09260 78 A----VADADLVIEAVPEKLELKKAVFETADAHAPA-ECYIA 114 (288)
T ss_pred h----hcCCCEEEEeccCCHHHHHHHHHHHHhhCCC-CcEEE
Confidence 2 245799997755432 34677778887777 55543
No 422
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.80 E-value=3.5 Score=37.97 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=52.9
Q ss_pred CCCeEEEEccccHHHHHHH--HHHHccCCCcEEEEEeCChhH---HHHHHHHhcCCCCcEEEE-EcchHHH---hhhcc-
Q 041509 40 NAQLMVVACANVANATTLA--LAAAAHQTGGRVVCILRRVEE---YKLSKKILGLDASHVEFV-IGDAQSL---LLSHF- 109 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~--la~a~~~~~g~v~tiE~~~~~---~~~Ar~~~~~~~~~V~~~-~gda~e~---l~~l~- 109 (211)
+++.|+=++-+|+|-+|.. ||..+...+.+|.-++.|+.. .+.-+.+.+ ...+.++ ..+..++ +..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae--~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVK--TIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhh--hcCCcEEecCCHHHHHHHHHHHHh
Confidence 3456666623899998877 444443334467667776653 333333322 1223333 2343333 22222
Q ss_pred -CCccEEEEcCCcCcH--HHHHHHHHh---cCCCCcEEEEEe
Q 041509 110 -READFVLIDCNLENH--EGVLRAVQA---GNKPNGAVVVGY 145 (211)
Q Consensus 110 -~~fD~VfiD~~~~~y--~~~l~~~~~---~L~pgG~viv~d 145 (211)
..+|+||+|...+.+ .+.++++.+ ...|.-.+++.+
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLs 359 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLS 359 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEEC
Confidence 269999999865533 223333333 344544555533
No 423
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=87.68 E-value=2.8 Score=33.54 Aligned_cols=105 Identities=18% Similarity=0.152 Sum_probs=63.3
Q ss_pred cccHHHHHHHHHHHccCCCcEE--EEEeCChhHHHHHH---HHhcCC-CCcEEEEEc-chHHHhhhc---cCCccEEEEc
Q 041509 49 ANVANATTLALAAAAHQTGGRV--VCILRRVEEYKLSK---KILGLD-ASHVEFVIG-DAQSLLLSH---FREADFVLID 118 (211)
Q Consensus 49 Gtg~G~stl~la~a~~~~~g~v--~tiE~~~~~~~~Ar---~~~~~~-~~~V~~~~g-da~e~l~~l---~~~fD~VfiD 118 (211)
|=|-=..+++|++.... +..| |+.|..++..+... +|++.+ ...++++.| ||.++-... ..+||.|+-.
T Consensus 4 GeGdfSFs~sL~~~~~~-~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGS-ATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eccchHHHHHHHHHcCC-CCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 44445567788887653 4444 66666665555433 555522 233444444 555543322 4789999987
Q ss_pred CCcCc----------------HHHHHHHHHhcCCCCcEEEEEecCCCC-Ccee
Q 041509 119 CNLEN----------------HEGVLRAVQAGNKPNGAVVVGYNAFRK-GSWR 154 (211)
Q Consensus 119 ~~~~~----------------y~~~l~~~~~~L~pgG~viv~dn~~~~-~~~~ 154 (211)
.++-. ...+++.+.++|+++|.|.|...--.+ ..|.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~ 135 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWN 135 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCcccc
Confidence 54322 267888889999999998886643333 3453
No 424
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.66 E-value=14 Score=33.29 Aligned_cols=101 Identities=11% Similarity=-0.001 Sum_probs=61.0
Q ss_pred hhCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE---cchHHHhhhc--cC
Q 041509 37 AGNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI---GDAQSLLLSH--FR 110 (211)
Q Consensus 37 ~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~---gda~e~l~~l--~~ 110 (211)
...+.++||-. |+ ++|..++.+|++.. ...++++|.+++..+.|++. +. + .+.. .+..+.+..+ ..
T Consensus 182 ~~~~g~~VlV~-G~G~iG~~aiqlAk~~G--a~~vi~~d~~~~r~~~a~~~--Ga-~--~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 182 GVGPGSTVYIA-GAGPVGLAAAASAQLLG--AAVVIVGDLNPARLAQARSF--GC-E--TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHcC--CceEEEeCCCHHHHHHHHHc--CC-e--EEecCCcccHHHHHHHHcCCC
Confidence 34556777667 54 56777777777652 23467778999888888763 22 2 2222 1333333322 24
Q ss_pred CccEEEEcCCcCc-----------HHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLEN-----------HEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~~-----------y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+|++|--..... -...++++.+.++++|.+++.-
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 6898874333211 1246788888899999988754
No 425
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=87.62 E-value=4.3 Score=34.47 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=25.4
Q ss_pred CCCeEEEE--ccccHHHHH--HHHHHHccCCCcEEEEEeCChhH
Q 041509 40 NAQLMVVA--CANVANATT--LALAAAAHQTGGRVVCILRRVEE 79 (211)
Q Consensus 40 ~~~~VLEi--~Gtg~G~st--l~la~a~~~~~g~v~tiE~~~~~ 79 (211)
++.+++=+ +..|.|-|| ..||.++...+.+|.-||.|...
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~ 144 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRD 144 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 33455444 125566665 45777776667799999998654
No 426
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=87.61 E-value=17 Score=31.53 Aligned_cols=98 Identities=18% Similarity=0.113 Sum_probs=56.6
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCccEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD~V 115 (211)
.++++||-..+.+.|..++.+|++. +. +|+.++.+++..+.+++. . ...-+.....+.. .+.++ .+.+|++
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~---G~~~v~~~~~~~~~~~~~~~~-g-~~~~~~~~~~~~~-~~~~~~~~~~vd~v 235 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAA---GASLVIASDPNPYRLELAKKM-G-ADVVINPREEDVV-EVKSVTDGTGVDVV 235 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc---CCcEEEEECCCHHHHHHHHHh-C-cceeeCcccccHH-HHHHHcCCCCCCEE
Confidence 4556666561245677888888875 45 788888888777766642 2 1111111222332 22222 3579998
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|-.... ....+.+.+.|+++|.++...
T Consensus 236 ld~~g~---~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 236 LEMSGN---PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EECCCC---HHHHHHHHHHhccCCEEEEEc
Confidence 754332 234566677788889877654
No 427
>PRK07454 short chain dehydrogenase; Provisional
Probab=87.56 E-value=6.1 Score=32.29 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=51.9
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhhc---cC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLSH---FR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~l---~~ 110 (211)
..+.+|-+ |+ +|..+..+++.+...+.+|+.++.+++..+...+.++....++.++.+|..+. +... .+
T Consensus 5 ~~k~vlIt-G~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALIT-GA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEe-CC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 34678888 64 55566777776665577999999998766555554443345788888886432 1111 35
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
+.|.++..+.
T Consensus 83 ~id~lv~~ag 92 (241)
T PRK07454 83 CPDVLINNAG 92 (241)
T ss_pred CCCEEEECCC
Confidence 7899997653
No 428
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=87.50 E-value=13 Score=31.55 Aligned_cols=97 Identities=11% Similarity=0.101 Sum_probs=56.5
Q ss_pred hCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCcc
Q 041509 38 GNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREAD 113 (211)
Q Consensus 38 ~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD 113 (211)
..+.+.||-. |. +.|..++.++.+. +.+++.++.+++..+.++.. +....+.....+..+.+... .+.+|
T Consensus 164 ~~~~~~vlI~-g~~~~iG~~~~~~~~~~---g~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (342)
T cd08266 164 LRPGETVLVH-GAGSGVGSAAIQIAKLF---GATVIATAGSEDKLERAKEL--GADYVIDYRKEDFVREVRELTGKRGVD 237 (342)
T ss_pred CCCCCEEEEE-CCCchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHc--CCCeEEecCChHHHHHHHHHhCCCCCc
Confidence 4456778877 64 5677666666664 67899999998877766432 21111222222222222222 34789
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+++-.... ..++.+.+.++++|.++..
T Consensus 238 ~~i~~~g~----~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 238 VVVEHVGA----ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred EEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence 88844332 2455566677788887764
No 429
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=87.47 E-value=10 Score=31.22 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=51.7
Q ss_pred EEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh-cCC---CCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 44 MVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL-GLD---ASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~-~~~---~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
|.=| | |+|..+..++..+...+.+|+.++.+++..+...+.. ... .-.+++...+..+.+ ...|+||+-.
T Consensus 3 I~II-G-G~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~----~~aDvVilav 76 (219)
T TIGR01915 3 IAVL-G-GTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAA----KRADVVILAV 76 (219)
T ss_pred EEEE-c-CCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHH----hcCCEEEEEC
Confidence 5556 5 3455555666665554568888999988765544432 111 111223333433332 3579999998
Q ss_pred CcCcHHHHHHHHHhcCC
Q 041509 120 NLENHEGVLRAVQAGNK 136 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~ 136 (211)
......+.++.+.+.+.
T Consensus 77 p~~~~~~~l~~l~~~l~ 93 (219)
T TIGR01915 77 PWDHVLKTLESLRDELS 93 (219)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 87777777777766554
No 430
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=87.36 E-value=2.3 Score=36.91 Aligned_cols=96 Identities=21% Similarity=0.136 Sum_probs=58.3
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcE--EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCC
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGR--VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCN 120 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~--v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~ 120 (211)
+|+=+ | .|..+-++|+.++..+-. ++..|.+....+.|.+ -+..+. ..+... .......|+||+.-+
T Consensus 5 ~v~Iv-G--~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~--lgv~d~----~~~~~~--~~~~~~aD~VivavP 73 (279)
T COG0287 5 KVGIV-G--LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE--LGVIDE----LTVAGL--AEAAAEADLVIVAVP 73 (279)
T ss_pred EEEEE-C--CchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh--cCcccc----cccchh--hhhcccCCEEEEecc
Confidence 45555 5 677778888888764444 4555555554444432 122111 111110 112456899999999
Q ss_pred cCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 121 LENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 121 ~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.....++++++.+.|++ |.+++ |-...+.
T Consensus 74 i~~~~~~l~~l~~~l~~-g~iv~-Dv~S~K~ 102 (279)
T COG0287 74 IEATEEVLKELAPHLKK-GAIVT-DVGSVKS 102 (279)
T ss_pred HHHHHHHHHHhcccCCC-CCEEE-ecccccH
Confidence 98899999999998987 66654 6444443
No 431
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=87.31 E-value=3.8 Score=34.77 Aligned_cols=91 Identities=20% Similarity=0.098 Sum_probs=52.4
Q ss_pred HHHHHHHHHccCCCcEEEEEeCChhHHHHHHH-Hhc--CCCCcEEEEEcchHHHhhhccCCccEEEEcCCcCcHHHHHHH
Q 041509 54 ATTLALAAAAHQTGGRVVCILRRVEEYKLSKK-ILG--LDASHVEFVIGDAQSLLLSHFREADFVLIDCNLENHEGVLRA 130 (211)
Q Consensus 54 ~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~-~~~--~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~~~y~~~l~~ 130 (211)
+.+..|+++ +..|+-+..+ +.++..++ -+. .......+..-.+.+-... .+++|+||+-....+..+.++.
T Consensus 5 ~~a~~L~~~----G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~l~~ 78 (293)
T TIGR00745 5 LYGAYLARA----GHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQTEEAAAL 78 (293)
T ss_pred HHHHHHHhC----CCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhHHHHHHH
Confidence 334455543 5679999886 33433332 121 1112222211111111121 3589999998776677888999
Q ss_pred HHhcCCCCcEEEEEecCCCC
Q 041509 131 VQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 131 ~~~~L~pgG~viv~dn~~~~ 150 (211)
+.+.+.++..++...|-+..
T Consensus 79 l~~~l~~~~~iv~~qNG~g~ 98 (293)
T TIGR00745 79 LLPLIGKNTKVLFLQNGLGH 98 (293)
T ss_pred hHhhcCCCCEEEEccCCCCC
Confidence 99999887777776776643
No 432
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=87.29 E-value=5.2 Score=33.12 Aligned_cols=79 Identities=19% Similarity=0.250 Sum_probs=53.9
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--h----hhc---cC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--L----LSH---FR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l----~~l---~~ 110 (211)
+.+++|-. | ++|..+.++++.+...+.+|+.++.+++..+...+.+.....++.++.+|..+. + ... .+
T Consensus 11 ~~k~ilIt-G-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVT-G-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEE-C-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 45778888 6 455566777777765577999999998877766665553345688888887542 1 111 35
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
++|.|+..+.
T Consensus 89 ~id~vi~~ag 98 (259)
T PRK08213 89 HVDILVNNAG 98 (259)
T ss_pred CCCEEEECCC
Confidence 7899987653
No 433
>PRK10083 putative oxidoreductase; Provisional
Probab=87.23 E-value=16 Score=31.51 Aligned_cols=102 Identities=12% Similarity=0.055 Sum_probs=56.1
Q ss_pred hhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 37 AGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 37 ~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
...+.++||=. | .+.|..++.+|+++. ....+++++.+++..+.+++. +...-+.....+..+.+......+|++
T Consensus 157 ~~~~g~~vlI~-g~g~vG~~~~~~a~~~~-G~~~v~~~~~~~~~~~~~~~~--Ga~~~i~~~~~~~~~~~~~~g~~~d~v 232 (339)
T PRK10083 157 GPTEQDVALIY-GAGPVGLTIVQVLKGVY-NVKAVIVADRIDERLALAKES--GADWVINNAQEPLGEALEEKGIKPTLI 232 (339)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHh--CCcEEecCccccHHHHHhcCCCCCCEE
Confidence 34566777777 5 345555666666421 124688999999988888753 211112222223333333212234554
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+... ...+....+.|+++|.++...
T Consensus 233 -id~~g~--~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 233 -IDAACH--PSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred -EECCCC--HHHHHHHHHHhhcCCEEEEEc
Confidence 554332 234666677778889887653
No 434
>PRK09354 recA recombinase A; Provisional
Probab=87.18 E-value=3.5 Score=37.07 Aligned_cols=116 Identities=21% Similarity=0.193 Sum_probs=64.0
Q ss_pred HHHHHh--hCCCCeEEEEcc-ccHHHHHHHH---HHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcc----h
Q 041509 32 ISALAA--GNNAQLMVVACA-NVANATTLAL---AAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGD----A 101 (211)
Q Consensus 32 L~~l~~--~~~~~~VLEi~G-tg~G~stl~l---a~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gd----a 101 (211)
|..+.. +.+..+|.||+| +|+|-+++++ +.++. .++.+.=||.....-....+.+.-..+++-+..-+ +
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~ 126 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQA 126 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHH
Confidence 555544 677788999944 8899998886 33333 36777777765544332222222112344333322 2
Q ss_pred HHHhhhc--cCCccEEEEcCCcCcH---------------------HHHHHHHHhcCCCCcEEEEEecCC
Q 041509 102 QSLLLSH--FREADFVLIDCNLENH---------------------EGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 102 ~e~l~~l--~~~fD~VfiD~~~~~y---------------------~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
.+.+..+ .+.+|+|++|.-...+ ...++.+...++..++.+++-|-.
T Consensus 127 l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQv 196 (349)
T PRK09354 127 LEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQI 196 (349)
T ss_pred HHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEEee
Confidence 2333333 4689999999622111 122444555566677777776644
No 435
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=87.09 E-value=13 Score=32.13 Aligned_cols=99 Identities=21% Similarity=0.268 Sum_probs=59.6
Q ss_pred hhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 37 AGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 37 ~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
...+.++||-. | .+.|..++.+|++. +.+|+.++.+++..+.+++ +. ...-+.....+..+.+..+ +.+|++
T Consensus 160 ~~~~~~~vlV~-g~g~iG~~~~~~a~~~---G~~vi~~~~~~~~~~~~~~-~g-~~~~i~~~~~~~~~~~~~~-~~~d~v 232 (333)
T cd08296 160 GAKPGDLVAVQ-GIGGLGHLAVQYAAKM---GFRTVAISRGSDKADLARK-LG-AHHYIDTSKEDVAEALQEL-GGAKLI 232 (333)
T ss_pred CCCCCCEEEEE-CCcHHHHHHHHHHHHC---CCeEEEEeCChHHHHHHHH-cC-CcEEecCCCccHHHHHHhc-CCCCEE
Confidence 44556778777 5 35666666677664 5689999999988888854 22 1111222222333333333 468988
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+ |+.. ....++.+.+.|+++|.++...
T Consensus 233 i-~~~g--~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 233 L-ATAP--NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred E-ECCC--chHHHHHHHHHcccCCEEEEEe
Confidence 7 4321 1246677777888889877654
No 436
>PRK07671 cystathionine beta-lyase; Provisional
Probab=87.06 E-value=10 Score=34.07 Aligned_cols=122 Identities=12% Similarity=0.128 Sum_probs=65.5
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChh-HHHHHHHHhcCCCCcEEEEEc-
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVE-EYKLSKKILGLDASHVEFVIG- 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~-~~~~Ar~~~~~~~~~V~~~~g- 99 (211)
+.-.|...+|-..++...+.+..+=+ ++|++...+.++ .+. ++.+|+..+..-. ......+.+....-.+.++..
T Consensus 46 r~~~p~~~~Le~~lA~l~g~~~~~~~-~sG~aai~~~~~-~l~-~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 122 (377)
T PRK07671 46 RTGNPTRAALEELIAVLEGGHAGFAF-GSGMAAITAVMM-LFS-SGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTS 122 (377)
T ss_pred CCCChHHHHHHHHHHHHhCCCceEEe-CCHHHHHHHHHH-HhC-CCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCC
Confidence 34566677777777765555554446 676654433332 333 4678887765322 333333333322223444433
Q ss_pred chHHHhhhccCCccEEEEcCCc------CcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCNL------ENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~------~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
|..++...+..+..+|++.... .+..+..+.+. ..|.++++|+++..
T Consensus 123 d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~----~~g~~lvvD~a~~~ 175 (377)
T PRK07671 123 NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAK----EKGLLTIVDNTFMT 175 (377)
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHH----HcCCEEEEECCCCc
Confidence 4444434334567899986432 13344444443 35788888998754
No 437
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=87.03 E-value=8.3 Score=33.22 Aligned_cols=99 Identities=16% Similarity=0.071 Sum_probs=54.0
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCCh----hHHHHHHHHhcCCCCcEEEEEc---chHHHhhh
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRV----EEYKLSKKILGLDASHVEFVIG---DAQSLLLS 107 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~----~~~~~Ar~~~~~~~~~V~~~~g---da~e~l~~ 107 (211)
...+.++||=. | .++|..++.+|.+. +.+++.+-.++ +..+.+++ + +...-+..... +..+.+..
T Consensus 143 ~~~~g~~vlI~-g~~g~vg~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~i~~ 216 (341)
T cd08290 143 KLQPGDWVIQN-GANSAVGQAVIQLAKLL---GIKTINVVRDRPDLEELKERLKA-L-GADHVLTEEELRSLLATELLKS 216 (341)
T ss_pred ccCCCCEEEEc-cchhHHHHHHHHHHHHc---CCeEEEEEcCCCcchhHHHHHHh-c-CCCEEEeCcccccccHHHHHHH
Confidence 34567788877 5 57888888888876 45665554443 34555543 2 21111111111 23333332
Q ss_pred c-cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 108 H-FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 108 l-~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+ .+.+|+|+ |+... ..+..+.+.|+++|.++.+.
T Consensus 217 ~~~~~~d~vl-d~~g~---~~~~~~~~~l~~~G~~v~~g 251 (341)
T cd08290 217 APGGRPKLAL-NCVGG---KSATELARLLSPGGTMVTYG 251 (341)
T ss_pred HcCCCceEEE-ECcCc---HhHHHHHHHhCCCCEEEEEe
Confidence 2 22699887 55433 23445667788888877653
No 438
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=86.98 E-value=20 Score=31.31 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=56.1
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCC-CcEEEEEeCChhHH-HHHHHHhcCCCCcEEEEE-cchHHHhhhccCCccEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQT-GGRVVCILRRVEEY-KLSKKILGLDASHVEFVI-GDAQSLLLSHFREADFV 115 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~-~g~v~tiE~~~~~~-~~Ar~~~~~~~~~V~~~~-gda~e~l~~l~~~fD~V 115 (211)
.+.++|+-+ |+ |-.+..++..+... ..+|+.++.+++.. +.|++ +.. ..+. .+..+. -...|+|
T Consensus 176 l~~~~V~Vi-Ga--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~-~g~-----~~~~~~~~~~~----l~~aDvV 242 (311)
T cd05213 176 LKGKKVLVI-GA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAKE-LGG-----NAVPLDELLEL----LNEADVV 242 (311)
T ss_pred ccCCEEEEE-Cc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-cCC-----eEEeHHHHHHH----HhcCCEE
Confidence 367889999 87 55555555555432 35799999998765 44443 221 1222 122222 2458999
Q ss_pred EEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 116 LIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 116 fiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
|.-...+.+.+.++.+..... ++..+++|-..++
T Consensus 243 i~at~~~~~~~~~~~~~~~~~-~~~~~viDlavPr 276 (311)
T cd05213 243 ISATGAPHYAKIVERAMKKRS-GKPRLIVDLAVPR 276 (311)
T ss_pred EECCCCCchHHHHHHHHhhCC-CCCeEEEEeCCCC
Confidence 988776666444555544332 2334555866544
No 439
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=86.89 E-value=11 Score=33.64 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=57.5
Q ss_pred hCCCCeEEEEcc-ccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEc---chHHHhhhc--cC
Q 041509 38 GNNAQLMVVACA-NVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIG---DAQSLLLSH--FR 110 (211)
Q Consensus 38 ~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~g---da~e~l~~l--~~ 110 (211)
..+.++||-. | .+.|..++.+|++. +. +|++++.+++..+.+++. . ...-+..... +..+.+.++ ..
T Consensus 201 ~~~g~~VlV~-g~g~vG~~ai~lA~~~---G~~~vi~~~~~~~~~~~~~~~-g-~~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 201 FRPGAYVVVY-GAGPIGLAAIALAKAA---GASKVIAFEISEERRNLAKEM-G-ADYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHHc-C-CCEEEcccccccccHHHHHHHhcCCC
Confidence 4456777776 4 45666667777765 45 799999998877776652 2 2111111111 222222222 34
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+|+|+ |+.- .....++.+.+.|+++|.++...
T Consensus 275 gvDvvl-d~~g-~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 275 GADIQV-EAAG-APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCEEE-ECCC-CcHHHHHHHHHHHHcCCEEEEEC
Confidence 699776 6532 22345666677778889887643
No 440
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=86.82 E-value=14 Score=30.78 Aligned_cols=100 Identities=20% Similarity=0.141 Sum_probs=59.0
Q ss_pred HhhCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
....+.+.|+-. |+ +.|..++.++.+. +.+|+.++.+++..+.+++ + +...-+.....+..+.+... ...
T Consensus 135 ~~~~~~~~vli~-g~~~~~g~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~i~~~~~~~~ 208 (323)
T cd08241 135 ARLQPGETVLVL-GAAGGVGLAAVQLAKAL---GARVIAAASSEEKLALARA-L-GADHVIDYRDPDLRERVKALTGGRG 208 (323)
T ss_pred cCCCCCCEEEEE-cCCchHHHHHHHHHHHh---CCEEEEEeCCHHHHHHHHH-c-CCceeeecCCccHHHHHHHHcCCCC
Confidence 344566788888 75 5777777777764 5679999999888777754 2 22111222222333333322 346
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+++ |+.-. ...+.+.+.++++|.++.+.
T Consensus 209 ~d~v~-~~~g~---~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 209 VDVVY-DPVGG---DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred cEEEE-ECccH---HHHHHHHHhhccCCEEEEEc
Confidence 99887 43222 34555667778888876543
No 441
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.78 E-value=6.2 Score=32.17 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=52.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~ 110 (211)
+.+.+|-+ |+ +|..+..+++.+...+.+|+.++.+++..+.....+.....++.++..|..+. +.. ..+
T Consensus 6 ~~~~vlVt-G~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 6 QGKNALIT-GA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCCEEEEE-cC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 34678888 64 56677778777665678999999998766554444443345788888886332 111 135
Q ss_pred CccEEEEcC
Q 041509 111 EADFVLIDC 119 (211)
Q Consensus 111 ~fD~VfiD~ 119 (211)
+.|.|+..+
T Consensus 84 ~id~vi~~a 92 (239)
T PRK07666 84 SIDILINNA 92 (239)
T ss_pred CccEEEEcC
Confidence 789998765
No 442
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.76 E-value=9 Score=32.81 Aligned_cols=98 Identities=16% Similarity=0.052 Sum_probs=58.9
Q ss_pred HhhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcE-EEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH---HHhhhccC
Q 041509 36 AAGNNAQLMVVACANV-ANATTLALAAAAHQTGGR-VVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ---SLLLSHFR 110 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~-v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~---e~l~~l~~ 110 (211)
+...+.++||-+ |+| +|..++.+|++. +.+ ++.++.+++..+.+++. +.. .++..+.. +......+
T Consensus 155 ~~~~~g~~vlI~-g~g~vg~~~~~la~~~---G~~~v~~~~~~~~~~~~~~~~--g~~---~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 155 LGIKPGDSVLVF-GAGPIGLLLAQLLKLN---GASRVTVAEPNEEKLELAKKL--GAT---ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCcEEEEECCCHHHHHHHHHh--CCe---EEecCCCCCHHHHHHhcCC
Confidence 444567888888 654 577777787775 444 88999999888877542 211 22222211 11111145
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+|++|--... ...+..+.+.|+++|.++.+.
T Consensus 226 ~vd~v~~~~~~---~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATGV---PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCCC---hHHHHHHHHHHhcCCEEEEEe
Confidence 79999843222 245666677778889887654
No 443
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=86.70 E-value=10 Score=32.45 Aligned_cols=98 Identities=11% Similarity=0.011 Sum_probs=58.6
Q ss_pred hCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCcc
Q 041509 38 GNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREAD 113 (211)
Q Consensus 38 ~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD 113 (211)
..+.+.|+=. | ..+|..++.+|++. +.++++++.+++..+.+++ + +....+.....+..+.+..+ ...+|
T Consensus 138 ~~~g~~vlI~-g~~g~ig~~~~~lak~~---G~~v~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~d 211 (327)
T PRK10754 138 IKPDEQFLFH-AAAGGVGLIACQWAKAL---GAKLIGTVGSAQKAQRAKK-A-GAWQVINYREENIVERVKEITGGKKVR 211 (327)
T ss_pred CCCCCEEEEE-eCCcHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-C-CCCEEEcCCCCcHHHHHHHHcCCCCeE
Confidence 4456677655 4 56888888888875 6789999999888777754 2 22111211112232333222 34689
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+++ |+... .......+.++++|.++.+-
T Consensus 212 ~vl-~~~~~---~~~~~~~~~l~~~g~~v~~g 239 (327)
T PRK10754 212 VVY-DSVGK---DTWEASLDCLQRRGLMVSFG 239 (327)
T ss_pred EEE-ECCcH---HHHHHHHHHhccCCEEEEEc
Confidence 776 55322 34556677788889887654
No 444
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=86.64 E-value=5.2 Score=31.36 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc-CcHHHHHHH
Q 041509 52 ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL-ENHEGVLRA 130 (211)
Q Consensus 52 ~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~-~~y~~~l~~ 130 (211)
.|..+..+|+.+...+-+|+..|++++..+...+. + -....+..+.... .|+||+--.. ....+.+..
T Consensus 9 lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~--g-----~~~~~s~~e~~~~----~dvvi~~v~~~~~v~~v~~~ 77 (163)
T PF03446_consen 9 LGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA--G-----AEVADSPAEAAEQ----ADVVILCVPDDDAVEAVLFG 77 (163)
T ss_dssp -SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT--T-----EEEESSHHHHHHH----BSEEEE-SSSHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh--h-----hhhhhhhhhHhhc----ccceEeecccchhhhhhhhh
Confidence 46777777777765578999999999877665543 1 2344566666553 4999987544 355667776
Q ss_pred --HHhcCCCCcEEEEEecCCC
Q 041509 131 --VQAGNKPNGAVVVGYNAFR 149 (211)
Q Consensus 131 --~~~~L~pgG~viv~dn~~~ 149 (211)
+.+.|++ |.++|-.+...
T Consensus 78 ~~i~~~l~~-g~iiid~sT~~ 97 (163)
T PF03446_consen 78 ENILAGLRP-GKIIIDMSTIS 97 (163)
T ss_dssp TTHGGGS-T-TEEEEE-SS--
T ss_pred hHHhhcccc-ceEEEecCCcc
Confidence 7777876 66666333333
No 445
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.61 E-value=4.4 Score=32.40 Aligned_cols=105 Identities=17% Similarity=-0.009 Sum_probs=66.7
Q ss_pred HHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh-c-CCCCcEEEEEcchHHHhhhccCC
Q 041509 34 ALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL-G-LDASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~-~-~~~~~V~~~~gda~e~l~~l~~~ 111 (211)
.++...+..+.+|+ |+|-|-.-+..++-. --.-+++|.||-....+|-.. + +....++|..-|.-.+- ...
T Consensus 66 Sll~~n~~GklvDl-GSGDGRiVlaaar~g---~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d---l~d 138 (199)
T KOG4058|consen 66 SLLRGNPKGKLVDL-GSGDGRIVLAAARCG---LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD---LRD 138 (199)
T ss_pred HHccCCCCCcEEec-cCCCceeehhhhhhC---CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc---ccc
Confidence 44455666789999 999998555444321 135689999999998888654 3 77788888888876542 356
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|-.+++=+...-..+....+..-+..+-.++-+-
T Consensus 139 y~~vviFgaes~m~dLe~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 139 YRNVVIFGAESVMPDLEDKLRTELPANTRVVACR 172 (199)
T ss_pred cceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEe
Confidence 6666665655444444444443344444444433
No 446
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.60 E-value=9.3 Score=33.05 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=55.6
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc---CC--C--------CcEEEEEcchHHHhhhc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG---LD--A--------SHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~---~~--~--------~~V~~~~gda~e~l~~l 108 (211)
++|.=| |+|. .+..+|..+...+-+|+.+|.+++.++.+++.+. +. . .++++ ..|..+.
T Consensus 5 ~~I~vI-GaG~--mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~---- 76 (311)
T PRK06130 5 QNLAII-GAGT--MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA---- 76 (311)
T ss_pred cEEEEE-CCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH----
Confidence 567778 7764 3444444443335689999999999888876532 11 1 11222 2233322
Q ss_pred cCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEE
Q 041509 109 FREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVV 143 (211)
Q Consensus 109 ~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv 143 (211)
-...|+||+..... .....+..+.+.+++ +.+++
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~-~~ii~ 112 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDP-DTIFA 112 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCC-CcEEE
Confidence 24579999876544 256778888776664 55554
No 447
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=86.55 E-value=16 Score=31.00 Aligned_cols=94 Identities=16% Similarity=0.044 Sum_probs=56.7
Q ss_pred CCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEE
Q 041509 41 AQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLI 117 (211)
Q Consensus 41 ~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~Vfi 117 (211)
.++||=. | .+.|..++.+|++. +.+|++++.+++..+.+++ +. . +.+--......+.+..+ ...+|.|+
T Consensus 147 ~~~vlI~-g~~g~vg~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~g-~-~~v~~~~~~~~~~~~~~~~~~~d~vl- 218 (326)
T cd08289 147 QGPVLVT-GATGGVGSLAVSILAKL---GYEVVASTGKADAADYLKK-LG-A-KEVIPREELQEESIKPLEKQRWAGAV- 218 (326)
T ss_pred CCEEEEE-cCCchHHHHHHHHHHHC---CCeEEEEecCHHHHHHHHH-cC-C-CEEEcchhHHHHHHHhhccCCcCEEE-
Confidence 4578777 5 46777777777765 5689999999988877754 22 1 11111111111222222 35689876
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 118 DCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 118 D~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
|+-.. ..++...+.|+++|.++..-
T Consensus 219 d~~g~---~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 219 DPVGG---KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred ECCcH---HHHHHHHHHhhcCCEEEEEe
Confidence 65432 34666777788889887653
No 448
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=86.52 E-value=15 Score=31.18 Aligned_cols=97 Identities=16% Similarity=0.115 Sum_probs=56.3
Q ss_pred hCCCCeEEEEccc--cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCcc
Q 041509 38 GNNAQLMVVACAN--VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREAD 113 (211)
Q Consensus 38 ~~~~~~VLEi~Gt--g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~fD 113 (211)
..+...||=. |+ +.|..++.+|++. +.+++.+..+++..+.+++ + +...-+.....+..+.+..+ ...+|
T Consensus 136 ~~~~~~vlI~-g~~~~vg~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (323)
T cd05282 136 LPPGDWVIQN-AANSAVGRMLIQLAKLL---GFKTINVVRRDEQVEELKA-L-GADEVIDSSPEDLAQRVKEATGGAGAR 209 (323)
T ss_pred CCCCCEEEEc-ccccHHHHHHHHHHHHC---CCeEEEEecChHHHHHHHh-c-CCCEEecccchhHHHHHHHHhcCCCce
Confidence 3456677766 54 5888888888875 6788888888877777753 2 22111111111222222222 34799
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
.|+ |+.... ......+.|+++|.++..
T Consensus 210 ~vl-~~~g~~---~~~~~~~~l~~~g~~v~~ 236 (323)
T cd05282 210 LAL-DAVGGE---SATRLARSLRPGGTLVNY 236 (323)
T ss_pred EEE-ECCCCH---HHHHHHHhhCCCCEEEEE
Confidence 887 544331 234556678888887754
No 449
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=86.46 E-value=3.7 Score=35.35 Aligned_cols=79 Identities=9% Similarity=0.090 Sum_probs=51.5
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH--hhhccCCccEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL--LLSHFREADFV 115 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~--l~~l~~~fD~V 115 (211)
+.++||-. | |+|+.+.++++.+...+.+|+.+..+++.......... +...+++++.+|..+. +......+|.|
T Consensus 4 ~~k~vlVt-G-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVT-G-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEE-C-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 35778888 5 57888888888776656788887777654433322222 2235789999998653 23333468998
Q ss_pred EEcCC
Q 041509 116 LIDCN 120 (211)
Q Consensus 116 fiD~~ 120 (211)
|..+.
T Consensus 82 ih~A~ 86 (325)
T PLN02989 82 FHTAS 86 (325)
T ss_pred EEeCC
Confidence 87653
No 450
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=86.41 E-value=13 Score=31.74 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=58.4
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcE-EEEEcchHHHhhhc-cCCc
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHV-EFVIGDAQSLLLSH-FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V-~~~~gda~e~l~~l-~~~f 112 (211)
...+.++||=. | .++|..++.+|.+. +.+|+.+..+++..+.+++ +. . +.+ .....+..+.+..+ .+.+
T Consensus 136 ~~~~~~~vlI~-ga~g~ig~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~g-~-~~v~~~~~~~~~~~~~~~~~~~v 208 (329)
T cd08250 136 EMKSGETVLVT-AAAGGTGQFAVQLAKLA---GCHVIGTCSSDEKAEFLKS-LG-C-DRPINYKTEDLGEVLKKEYPKGV 208 (329)
T ss_pred CCCCCCEEEEE-eCccHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHH-cC-C-ceEEeCCCccHHHHHHHhcCCCC
Confidence 44567778777 5 56777777777774 6789999988887777754 32 1 111 11111222223222 3468
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|++| |+... ..+..+.+.|+++|.++.+
T Consensus 209 d~v~-~~~g~---~~~~~~~~~l~~~g~~v~~ 236 (329)
T cd08250 209 DVVY-ESVGG---EMFDTCVDNLALKGRLIVI 236 (329)
T ss_pred eEEE-ECCcH---HHHHHHHHHhccCCeEEEE
Confidence 9887 43322 4566667778888887754
No 451
>PLN02427 UDP-apiose/xylose synthase
Probab=86.37 E-value=3.3 Score=36.89 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=51.0
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCC-cEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHH--hhhccCCccE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTG-GRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSL--LLSHFREADF 114 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~-g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~--l~~l~~~fD~ 114 (211)
.++++||-+ | |+|+.+.++++.+-..+ -+|++++.+++.......... ....+++++.+|..+. +......+|.
T Consensus 12 ~~~~~VlVT-G-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 12 IKPLTICMI-G-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred ccCcEEEEE-C-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 356789987 4 68999999998886543 589999987654322111100 1234699999998643 2223346899
Q ss_pred EEEcC
Q 041509 115 VLIDC 119 (211)
Q Consensus 115 VfiD~ 119 (211)
||--+
T Consensus 90 ViHlA 94 (386)
T PLN02427 90 TINLA 94 (386)
T ss_pred EEEcc
Confidence 88655
No 452
>PRK07680 late competence protein ComER; Validated
Probab=86.31 E-value=7.3 Score=33.18 Aligned_cols=87 Identities=10% Similarity=0.094 Sum_probs=54.6
Q ss_pred EEEEccccHHHHHHHHHHHccCCC----cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 44 MVVACANVANATTLALAAAAHQTG----GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~----g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
|.=| | .|..+..++.++...+ ..|+.++.+++..+.+.+.+. .++. ..+..+.+ ...|+||+-.
T Consensus 3 I~iI-G--~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~----g~~~-~~~~~~~~----~~aDiVilav 70 (273)
T PRK07680 3 IGFI-G--TGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP----GIHV-AKTIEEVI----SQSDLIFICV 70 (273)
T ss_pred EEEE-C--ccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC----CeEE-ECCHHHHH----HhCCEEEEec
Confidence 4445 5 4666666666654423 268999999877655544321 2332 34554443 3579999988
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEE
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVV 142 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~vi 142 (211)
......++++.+.+.++++..++
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEE
Confidence 66667788888888887755444
No 453
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=86.29 E-value=14 Score=33.06 Aligned_cols=93 Identities=20% Similarity=0.208 Sum_probs=53.2
Q ss_pred CCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhH-HHHHHHHhcCCCCcEEEEE-cchHHHhhhccCCccEEE
Q 041509 40 NAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEE-YKLSKKILGLDASHVEFVI-GDAQSLLLSHFREADFVL 116 (211)
Q Consensus 40 ~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~-~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l~~~fD~Vf 116 (211)
+.+.||-. | .+.|..++.+|++. +.+|+.++.+++. .+.+++ + +. +. ++. .+... +....+.+|+||
T Consensus 178 ~g~~VlV~-G~G~vG~~avq~Ak~~---Ga~Vi~~~~~~~~~~~~a~~-l-Ga-~~--~i~~~~~~~-v~~~~~~~D~vi 247 (375)
T PLN02178 178 SGKRLGVN-GLGGLGHIAVKIGKAF---GLRVTVISRSSEKEREAIDR-L-GA-DS--FLVTTDSQK-MKEAVGTMDFII 247 (375)
T ss_pred CCCEEEEE-cccHHHHHHHHHHHHc---CCeEEEEeCChHHhHHHHHh-C-CC-cE--EEcCcCHHH-HHHhhCCCcEEE
Confidence 46777766 4 45677777777775 5689999887654 445533 2 21 11 111 12122 222224689887
Q ss_pred EcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 117 IDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 117 iD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
--... ...++.+.+.++++|.++..-
T Consensus 248 d~~G~---~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 248 DTVSA---EHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred ECCCc---HHHHHHHHHhhcCCCEEEEEc
Confidence 43322 234666777788899887654
No 454
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=86.20 E-value=0.73 Score=41.40 Aligned_cols=92 Identities=10% Similarity=0.025 Sum_probs=63.8
Q ss_pred CCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHH-------HHHHHhc--CC-CC
Q 041509 23 AKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYK-------LSKKILG--LD-AS 92 (211)
Q Consensus 23 ~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~-------~Ar~~~~--~~-~~ 92 (211)
..+++..=+.+.++...+++.|.|=+ .|||..-+..| .-|+.|++-|+|-.++. -.+.|++ +. ..
T Consensus 191 SmDAeLSli~AN~Amv~pGdivyDPF-VGTGslLvsaa----~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~ 265 (421)
T KOG2671|consen 191 SMDAELSLIMANQAMVKPGDIVYDPF-VGTGSLLVSAA----HFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQ 265 (421)
T ss_pred ccchhHHHHHhhhhccCCCCEEecCc-cccCceeeehh----hhcceeeccccchheeecccCCCcchhHhHHHhCCcch
Confidence 35555555666778888899999984 78886433222 23899999999988776 2456776 43 44
Q ss_pred cEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 93 HVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 93 ~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
.+.++.+|...-.-.-...||.|+.|.
T Consensus 266 fldvl~~D~sn~~~rsn~~fDaIvcDP 292 (421)
T KOG2671|consen 266 FLDVLTADFSNPPLRSNLKFDAIVCDP 292 (421)
T ss_pred hhheeeecccCcchhhcceeeEEEeCC
Confidence 588888988653222267899999994
No 455
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=86.17 E-value=14 Score=30.71 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=57.4
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCCc
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FREA 112 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~f 112 (211)
...+.++|+=. | .+.|..++.++.+. +.+|+.+..+++..+.+++ +. ....+.....+..+.+..+ ...+
T Consensus 136 ~~~~~~~vlv~-g~~~~ig~~~~~~~~~~---g~~v~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
T cd05276 136 GLKAGETVLIH-GGASGVGTAAIQLAKAL---GARVIATAGSEEKLEACRA-LG-ADVAINYRTEDFAEEVKEATGGRGV 209 (323)
T ss_pred CCCCCCEEEEE-cCcChHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHH-cC-CCEEEeCCchhHHHHHHHHhCCCCe
Confidence 44566778877 6 46788777777764 6789999999888777744 22 1111111112222322222 3479
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
|++|-... . ..+....+.++++|.++.+
T Consensus 210 d~vi~~~g-~---~~~~~~~~~~~~~g~~i~~ 237 (323)
T cd05276 210 DVILDMVG-G---DYLARNLRALAPDGRLVLI 237 (323)
T ss_pred EEEEECCc-h---HHHHHHHHhhccCCEEEEE
Confidence 98874333 2 2255566677888876654
No 456
>PRK07109 short chain dehydrogenase; Provisional
Probab=86.16 E-value=16 Score=32.03 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=51.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhh---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLS---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~---l~~ 110 (211)
+.+.||-. |++.| .+..+++.+...+.+|+.++.+++.++...+.++....++.++..|..+. +.. ..+
T Consensus 7 ~~k~vlIT-Gas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVIT-GASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEE-CCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 45678888 65433 34556555544578999999998877766666653335678888885432 111 136
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
++|.++..+.
T Consensus 85 ~iD~lInnAg 94 (334)
T PRK07109 85 PIDTWVNNAM 94 (334)
T ss_pred CCCEEEECCC
Confidence 8999987654
No 457
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=86.08 E-value=12 Score=32.64 Aligned_cols=98 Identities=19% Similarity=0.166 Sum_probs=56.9
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchH---HHhhhc--cCCcc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQ---SLLLSH--FREAD 113 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~---e~l~~l--~~~fD 113 (211)
+.++||=....++|..++.+|++. +. +|+.++.+++..+.+++ +. ...-+.....+.. +.+..+ ...+|
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~---G~~~v~~~~~~~~~~~~~~~-~g-~~~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA---GARRVIVIDGSPERLELARE-FG-ADATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHH-cC-CCeEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 566777772255677777777775 45 89999999988877753 22 2111111111111 122222 34799
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
++|-.... ...++...+.|+++|.++..-
T Consensus 252 ~vid~~g~---~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 252 VVIEASGH---PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred EEEECCCC---hHHHHHHHHHhccCCEEEEEc
Confidence 88743322 235666677888889887643
No 458
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=86.03 E-value=16 Score=29.26 Aligned_cols=84 Identities=18% Similarity=0.106 Sum_probs=45.2
Q ss_pred CCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-CCCCcEEEEEcchHHHhhhccCCccEEEE
Q 041509 39 NNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-LDASHVEFVIGDAQSLLLSHFREADFVLI 117 (211)
Q Consensus 39 ~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~~~~~V~~~~gda~e~l~~l~~~fD~Vfi 117 (211)
.+.++++=+ |. +|..+..++..+...+.+|+.+..+++.++...+.+. .....+.....+-.+-+...-...|+|+.
T Consensus 26 l~~~~vlVl-Gg-tG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 26 LKGKTAVVL-GG-TGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCCEEEEE-CC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 355788888 63 2333334444333335689999998877665555443 12222333222112222222356899988
Q ss_pred cCCcCcH
Q 041509 118 DCNLENH 124 (211)
Q Consensus 118 D~~~~~y 124 (211)
......+
T Consensus 104 at~~g~~ 110 (194)
T cd01078 104 AGAAGVE 110 (194)
T ss_pred CCCCCce
Confidence 7766554
No 459
>PRK12829 short chain dehydrogenase; Provisional
Probab=86.02 E-value=9.7 Score=31.35 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=51.5
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh------hh---
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL------LS--- 107 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l------~~--- 107 (211)
...+.+++|-+ |. +|..+..+++.+...+.+|+.++.+++..+...+.... .+++++.+|..+.- ..
T Consensus 7 ~~~~~~~vlIt-Ga-~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (264)
T PRK12829 7 KPLDGLRVLVT-GG-ASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG--AKVTATVADVADPAQVERVFDTAVE 82 (264)
T ss_pred hccCCCEEEEe-CC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 34566889988 65 45566777766655678999999998766544433332 26788888865321 11
Q ss_pred ccCCccEEEEcC
Q 041509 108 HFREADFVLIDC 119 (211)
Q Consensus 108 l~~~fD~VfiD~ 119 (211)
..+++|.|+..+
T Consensus 83 ~~~~~d~vi~~a 94 (264)
T PRK12829 83 RFGGLDVLVNNA 94 (264)
T ss_pred HhCCCCEEEECC
Confidence 125789998765
No 460
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=85.99 E-value=9.3 Score=34.70 Aligned_cols=104 Identities=18% Similarity=0.121 Sum_probs=65.5
Q ss_pred HHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHH-HHHHHHhc--CCC-CcEEEEEcchHHHhh
Q 041509 31 FISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEY-KLSKKILG--LDA-SHVEFVIGDAQSLLL 106 (211)
Q Consensus 31 lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~-~~Ar~~~~--~~~-~~V~~~~gda~e~l~ 106 (211)
+|..+........||-+ +=..|..|++++.. . ++++ .|.-.. .-.++|++ +.. +.++++.. .+-
T Consensus 35 ll~~~~~~~~~~~~~i~-nd~fGal~~~l~~~-~-----~~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~~-- 102 (378)
T PRK15001 35 LLQQLDDTEIRGPVLIL-NDAFGALSCALAEH-K-----PYSI-GDSYISELATRENLRLNGIDESSVKFLDS--TAD-- 102 (378)
T ss_pred HHHHHhhcccCCCEEEE-cCchhHHHHHHHhC-C-----CCee-ehHHHHHHHHHHHHHHcCCCcccceeecc--ccc--
Confidence 44454443222379999 99999999999842 1 1233 333333 33456666 443 34666532 222
Q ss_pred hccCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEecC
Q 041509 107 SHFREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 107 ~l~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
+.+.+|+|++=-+|. .....+..+.+.|.|++.+++..+.
T Consensus 103 -~~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 103 -YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred -ccCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 345799999988876 3466788888899998887776653
No 461
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=85.82 E-value=15 Score=33.41 Aligned_cols=124 Identities=22% Similarity=0.164 Sum_probs=68.0
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCCh-hHHHHHHHHhcCCCCcEEEEEc-
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRV-EEYKLSKKILGLDASHVEFVIG- 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~-~~~~~Ar~~~~~~~~~V~~~~g- 99 (211)
+.-.|...+|-..++...+.+..+=. ++|+......+...+. ++.+|++.+... .......+.++...-.+.++..
T Consensus 66 r~~~p~~~~le~~lA~l~g~~~al~~-~sG~~Ai~~~l~all~-~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~ 143 (403)
T PRK07810 66 RYGNPTVSMFEERLRLIEGAEACFAT-ASGMSAVFTALGALLG-AGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGE 143 (403)
T ss_pred CCCCchHHHHHHHHHHHhCCCcEEEE-CChHHHHHHHHHHHhC-CCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCC
Confidence 34556666777777777777777777 6666655444433343 367787665321 2223333333312234555533
Q ss_pred chHHHhhhccCCccEEEEcCCcC------cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCNLE------NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~------~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
|..++...+....++|++..... +..++.+.+.+ .|.++++||++..+
T Consensus 144 d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~----~g~~vivD~a~a~~ 197 (403)
T PRK07810 144 DLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHA----AGAKVVLDNVFATP 197 (403)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHH----cCCEEEEECCCCcc
Confidence 33333333345678999864321 33444444443 57888889987654
No 462
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=85.75 E-value=9.2 Score=34.73 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=72.3
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeC-ChhHHHHHHHHhcCCCCcEEEEEc-
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILR-RVEEYKLSKKILGLDASHVEFVIG- 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~-~~~~~~~Ar~~~~~~~~~V~~~~g- 99 (211)
+.-.|.+..+=..++..-++..++=. .+|.+..+..+...+++ +.+|+..+. =.......++.+....-.++++-.
T Consensus 51 R~gnPt~~~le~~la~Le~g~~a~~~-~SGmaAi~~~l~~ll~~-Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~ 128 (386)
T PF01053_consen 51 RYGNPTVRALEQRLAALEGGEDALLF-SSGMAAISAALLALLKP-GDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPT 128 (386)
T ss_dssp TTC-HHHHHHHHHHHHHHT-SEEEEE-SSHHHHHHHHHHHHS-T-TBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTT
T ss_pred ccccccHHHHHHHHHHhhcccceeec-cchHHHHHHHHHhhccc-CCceEecCCccCcchhhhhhhhcccCcEEEEeCch
Confidence 34556666666666666667777777 67777776666655654 788877764 333444555444432334555544
Q ss_pred chHHHhhhccCCccEEEEcCCcC------cHHHHHHHHHhcCCCCc-EEEEEecCCCC
Q 041509 100 DAQSLLLSHFREADFVLIDCNLE------NHEGVLRAVQAGNKPNG-AVVVGYNAFRK 150 (211)
Q Consensus 100 da~e~l~~l~~~fD~VfiD~~~~------~y~~~l~~~~~~L~pgG-~viv~dn~~~~ 150 (211)
|..++-..+.+..++||+...-. +...+.+.+.+ .| .++++||.+-.
T Consensus 129 d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~----~g~~~~vVDnT~at 182 (386)
T PF01053_consen 129 DLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKE----HGDILVVVDNTFAT 182 (386)
T ss_dssp SHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHH----TTT-EEEEECTTTH
T ss_pred hHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHH----hCCceEEeeccccc
Confidence 33444333467899999986432 44555555544 56 89999998854
No 463
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=85.66 E-value=5.8 Score=36.47 Aligned_cols=103 Identities=14% Similarity=0.083 Sum_probs=60.3
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCC--------CcEEEEEcchHHHhhhccCC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDA--------SHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~--------~~V~~~~gda~e~l~~l~~~ 111 (211)
++.+|--| | .||.++-+|..+.. +-+|+++|++++.++..++...... ....+...+..+. -..
T Consensus 5 ~~mkI~vI-G--lGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~----~~~ 76 (425)
T PRK15182 5 DEVKIAII-G--LGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEK----IKE 76 (425)
T ss_pred CCCeEEEE-C--cCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHH----HcC
Confidence 34456555 4 68898998888865 5799999999998877663221000 0001111121222 245
Q ss_pred ccEEEEcCCcC-------cH---HHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 112 ADFVLIDCNLE-------NH---EGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 112 fD~VfiD~~~~-------~y---~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
.|++|+.-+.+ +. ....+.+.+.|++ |.++|......++
T Consensus 77 advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~-g~lVI~~STv~pg 125 (425)
T PRK15182 77 CNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNR-GDIVVYESTVYPG 125 (425)
T ss_pred CCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCC-CCEEEEecCCCCc
Confidence 78888753321 22 3334566777887 5666756666666
No 464
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=85.60 E-value=3.1 Score=37.52 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=54.6
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
++|.-| | |.|..+-++|.++...+..|+.+|.++. .+..+. ....|+||+..+.
T Consensus 99 ~~I~Ii-G-G~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~----~~~aDlVilavP~ 152 (374)
T PRK11199 99 RPVVIV-G-GKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDI----LADAGMVIVSVPI 152 (374)
T ss_pred ceEEEE-c-CCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHH----HhcCCEEEEeCcH
Confidence 567777 6 4677788888888765678999998631 122222 2357999998887
Q ss_pred CcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 122 ENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 122 ~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
....+.++.+.+ ++| |.+++ |+...+
T Consensus 153 ~~~~~~~~~l~~-l~~-~~iv~-Dv~SvK 178 (374)
T PRK11199 153 HLTEEVIARLPP-LPE-DCILV-DLTSVK 178 (374)
T ss_pred HHHHHHHHHHhC-CCC-CcEEE-ECCCcc
Confidence 777888888877 766 66554 765443
No 465
>PRK06223 malate dehydrogenase; Reviewed
Probab=85.58 E-value=21 Score=30.91 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=54.6
Q ss_pred CeEEEEccccH-HHHHHHHHHHccCCCcEEEEEeCChhHHHH-HHHHhc-C--CCCcEEEEE-cchHHHhhhccCCccEE
Q 041509 42 QLMVVACANVA-NATTLALAAAAHQTGGRVVCILRRVEEYKL-SKKILG-L--DASHVEFVI-GDAQSLLLSHFREADFV 115 (211)
Q Consensus 42 ~~VLEi~Gtg~-G~stl~la~a~~~~~g~v~tiE~~~~~~~~-Ar~~~~-~--~~~~V~~~~-gda~e~l~~l~~~fD~V 115 (211)
.+|.-| |+|. |+.....+... ... +|+.+|++++.++- +....+ . .....++.. +|..+ + ..-|+|
T Consensus 3 ~KI~VI-GaG~vG~~ia~~la~~-~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~----~~aDiV 74 (307)
T PRK06223 3 KKISII-GAGNVGATLAHLLALK-ELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-I----AGSDVV 74 (307)
T ss_pred CEEEEE-CCCHHHHHHHHHHHhC-CCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-H----CCCCEE
Confidence 468888 8877 76544433222 113 99999999886532 111112 1 112234432 44432 2 457999
Q ss_pred EEcCCcC----------------cHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 116 LIDCNLE----------------NHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 116 fiD~~~~----------------~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
++....+ .+.++.+.+.+.. |.+.+++..|..
T Consensus 75 ii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~ 122 (307)
T PRK06223 75 VITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPV 122 (307)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 9875321 2455666666655 567788877754
No 466
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=85.55 E-value=6.4 Score=36.76 Aligned_cols=123 Identities=13% Similarity=0.058 Sum_probs=71.0
Q ss_pred cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc-CcHHHHHH
Q 041509 51 VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL-ENHEGVLR 129 (211)
Q Consensus 51 g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~-~~y~~~l~ 129 (211)
|.|..+..||..+...+-+|+..|.+++..+...+........++ ...+..+.+..+ ...|+|++-... ....+.++
T Consensus 8 GLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~-~~~s~~e~v~~l-~~~d~Iil~v~~~~~v~~vi~ 85 (470)
T PTZ00142 8 GLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVK-GYHTLEELVNSL-KKPRKVILLIKAGEAVDETID 85 (470)
T ss_pred eEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcce-ecCCHHHHHhcC-CCCCEEEEEeCChHHHHHHHH
Confidence 355666667777655566999999999987766553221011222 244555655432 356877776433 35567788
Q ss_pred HHHhcCCCCcEEEE-EecCCCCCc------eecCCCcEEEeecCCcEEEEEEec
Q 041509 130 AVQAGNKPNGAVVV-GYNAFRKGS------WRSSGSKSQLLPIGEGLLVTRIAA 176 (211)
Q Consensus 130 ~~~~~L~pgG~viv-~dn~~~~~~------~~~~~~~~v~lpig~Gl~v~~~~~ 176 (211)
.+.+.|.+| .+++ +-|...... ....++..+=.|+..|..-++..+
T Consensus 86 ~l~~~L~~g-~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~ 138 (470)
T PTZ00142 86 NLLPLLEKG-DIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP 138 (470)
T ss_pred HHHhhCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC
Confidence 888888875 4444 223332211 123556666667666655444444
No 467
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.49 E-value=6 Score=36.09 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=47.1
Q ss_pred CeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hhhccCCccEEEEc
Q 041509 42 QLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LLSHFREADFVLID 118 (211)
Q Consensus 42 ~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~~l~~~fD~VfiD 118 (211)
++||-| ||| .|..+++...+ ...++|+..|.+++..+.+.....+ +++.+.=|+.+. +..+-..+|+|+.-
T Consensus 2 ~~ilvi-GaG~Vg~~va~~la~--~~d~~V~iAdRs~~~~~~i~~~~~~---~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVI-GAGGVGSVVAHKLAQ--NGDGEVTIADRSKEKCARIAELIGG---KVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEE-CCchhHHHHHHHHHh--CCCceEEEEeCCHHHHHHHHhhccc---cceeEEecccChHHHHHHHhcCCEEEEe
Confidence 568999 764 45444443322 2248999999999988888766442 677777776544 33344566888765
Q ss_pred CC
Q 041509 119 CN 120 (211)
Q Consensus 119 ~~ 120 (211)
++
T Consensus 76 ~p 77 (389)
T COG1748 76 AP 77 (389)
T ss_pred CC
Confidence 44
No 468
>PLN02702 L-idonate 5-dehydrogenase
Probab=85.31 E-value=10 Score=33.29 Aligned_cols=100 Identities=16% Similarity=0.095 Sum_probs=59.9
Q ss_pred hCCCCeEEEEccc-cHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEE--EEcchHHHhhhc----cC
Q 041509 38 GNNAQLMVVACAN-VANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEF--VIGDAQSLLLSH----FR 110 (211)
Q Consensus 38 ~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~--~~gda~e~l~~l----~~ 110 (211)
..+.++||-+ |+ +.|..++.+|++.. ...+++++.+++..+.+++. . ....+.+ ...+..+.+..+ .+
T Consensus 179 ~~~g~~vlI~-g~g~vG~~~~~~a~~~G--~~~v~~~~~~~~~~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (364)
T PLN02702 179 IGPETNVLVM-GAGPIGLVTMLAARAFG--APRIVIVDVDDERLSVAKQL-G-ADEIVLVSTNIEDVESEVEEIQKAMGG 253 (364)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh-C-CCEEEecCcccccHHHHHHHHhhhcCC
Confidence 4456788888 64 46777788888753 24689999998888877653 2 1111221 112333332211 35
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+|+|+--.... ..+..+.+.|+++|.++...
T Consensus 254 ~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 254 GIDVSFDCVGFN---KTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCEEEECCCCH---HHHHHHHHHHhcCCEEEEEc
Confidence 789886433322 35677777788889877655
No 469
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.17 E-value=4 Score=35.14 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=56.0
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc------------CC---------CCcEEEEEcc
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG------------LD---------ASHVEFVIGD 100 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~------------~~---------~~~V~~~~gd 100 (211)
++|.=| |+| ..+..+|..+...+-+|+.+|.+++.++.+++.+. +. ..++.+. .|
T Consensus 4 ~~I~Vi-GaG--~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~ 79 (291)
T PRK06035 4 KVIGVV-GSG--VMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TS 79 (291)
T ss_pred cEEEEE-Ccc--HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CC
Confidence 457777 665 44444554444445689999999999887665432 10 0112221 12
Q ss_pred hHHHhhhccCCccEEEEcCCcCc--HHHHHHHHHhcCCCCcEEEEEecC
Q 041509 101 AQSLLLSHFREADFVLIDCNLEN--HEGVLRAVQAGNKPNGAVVVGYNA 147 (211)
Q Consensus 101 a~e~l~~l~~~fD~VfiD~~~~~--y~~~l~~~~~~L~pgG~viv~dn~ 147 (211)
. +. -...|+|+....... ..++++.+.+.++| +.+++ .|.
T Consensus 80 ~-~~----~~~aDlVieav~e~~~~k~~~~~~l~~~~~~-~~il~-S~t 121 (291)
T PRK06035 80 Y-ES----LSDADFIVEAVPEKLDLKRKVFAELERNVSP-ETIIA-SNT 121 (291)
T ss_pred H-HH----hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC-CeEEE-EcC
Confidence 2 21 245799998764432 46788888887776 56654 543
No 470
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.12 E-value=10 Score=32.98 Aligned_cols=95 Identities=16% Similarity=0.123 Sum_probs=55.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDC 119 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~ 119 (211)
.+++|+=+ |.|. .+..++..+...+.+|+.++.+++..+.++.. + .+++ +. +.+...-..+|+||.-.
T Consensus 151 ~g~kvlVi-G~G~--iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~--G----~~~~--~~-~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 151 HGSNVLVL-GFGR--TGMTLARTLKALGANVTVGARKSAHLARITEM--G----LSPF--HL-SELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCEEEEE-CCcH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc--C----Ceee--cH-HHHHHHhCCCCEEEECC
Confidence 57889999 7643 44444444433467999999998876665431 2 1111 11 11222335799999865
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 120 NLENHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 120 ~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+.. -..+...+.++| |.+++ |-+..++
T Consensus 219 p~~---~i~~~~l~~~~~-g~vII-Dla~~pg 245 (296)
T PRK08306 219 PAL---VLTKEVLSKMPP-EALII-DLASKPG 245 (296)
T ss_pred Chh---hhhHHHHHcCCC-CcEEE-EEccCCC
Confidence 432 123455566777 55554 7666665
No 471
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=85.08 E-value=2.9 Score=36.76 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=51.6
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh-c----CCCCcEEEEEcchHHH--hhhccCCc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL-G----LDASHVEFVIGDAQSL--LLSHFREA 112 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~-~----~~~~~V~~~~gda~e~--l~~l~~~f 112 (211)
+.++||-+ | |+|+.+.+|+..+...+-+|+++|..+.........+ . ....+++++.+|..+. +..+...+
T Consensus 14 ~~~~vlVt-G-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLIT-G-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEE-C-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 44789988 4 6899999999988765668999998654221111111 1 1124689999998653 23334568
Q ss_pred cEEEEcCC
Q 041509 113 DFVLIDCN 120 (211)
Q Consensus 113 D~VfiD~~ 120 (211)
|.||--+.
T Consensus 92 d~ViHlAa 99 (348)
T PRK15181 92 DYVLHQAA 99 (348)
T ss_pred CEEEECcc
Confidence 99987653
No 472
>PLN02256 arogenate dehydrogenase
Probab=84.96 E-value=12 Score=32.76 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=59.3
Q ss_pred HHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCC
Q 041509 32 ISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFRE 111 (211)
Q Consensus 32 L~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~ 111 (211)
|...+...+..+|.=| |+ |..+-+++.++...+.+|+++|.++. .+.|++ + + +.. ..+..+.+ ...
T Consensus 27 ~~~~~~~~~~~kI~II-G~--G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~-~-g----v~~-~~~~~e~~---~~~ 92 (304)
T PLN02256 27 LQEELEKSRKLKIGIV-GF--GNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAE-L-G----VSF-FRDPDDFC---EEH 92 (304)
T ss_pred HhHhhccCCCCEEEEE-ee--CHHHHHHHHHHHhCCCEEEEEECccH-HHHHHH-c-C----Cee-eCCHHHHh---hCC
Confidence 3333344455678888 75 55666677776554558999999874 233332 1 2 121 33444432 235
Q ss_pred ccEEEEcCCcCcHHHHHHHH-HhcCCCCcEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAV-QAGNKPNGAVVV 143 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~-~~~L~pgG~viv 143 (211)
.|+||+........++++.+ ...++| |.+++
T Consensus 93 aDvVilavp~~~~~~vl~~l~~~~l~~-~~ivi 124 (304)
T PLN02256 93 PDVVLLCTSILSTEAVLRSLPLQRLKR-STLFV 124 (304)
T ss_pred CCEEEEecCHHHHHHHHHhhhhhccCC-CCEEE
Confidence 79999988777778888887 566776 55554
No 473
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=84.91 E-value=17 Score=31.43 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=58.1
Q ss_pred hhCCCCeEEEEcc-ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEE-cchHHHhhhc-cCCcc
Q 041509 37 AGNNAQLMVVACA-NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVI-GDAQSLLLSH-FREAD 113 (211)
Q Consensus 37 ~~~~~~~VLEi~G-tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~-gda~e~l~~l-~~~fD 113 (211)
...+.++||-. | .+.|..++.+|++. +.+|+.+..+++..+.+++ + +...-+.... .+..+.+..+ .+.+|
T Consensus 162 ~~~~~~~vlV~-g~g~vg~~~~~~a~~~---G~~vi~~~~~~~~~~~~~~-~-g~~~~i~~~~~~~~~~~~~~~~~~~~d 235 (345)
T cd08260 162 RVKPGEWVAVH-GCGGVGLSAVMIASAL---GARVIAVDIDDDKLELARE-L-GAVATVNASEVEDVAAAVRDLTGGGAH 235 (345)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCeEEEEeCCHHHHHHHHH-h-CCCEEEccccchhHHHHHHHHhCCCCC
Confidence 34456777766 4 35677777777764 6789999999988888754 3 2211122222 2332222222 23799
Q ss_pred EEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 114 FVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 114 ~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
++| |+-.. ...+..+.+.|+++|.++..
T Consensus 236 ~vi-~~~g~--~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 236 VSV-DALGI--PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred EEE-EcCCC--HHHHHHHHHHhhcCCEEEEe
Confidence 887 44221 23455667777888887754
No 474
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=84.86 E-value=2.4 Score=33.25 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=38.8
Q ss_pred cHHHHH--HHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cCCccEEEEcCCcCc
Q 041509 51 VANATT--LALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FREADFVLIDCNLEN 123 (211)
Q Consensus 51 g~G~st--l~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~~fD~VfiD~~~~~ 123 (211)
|+|-|| +.||.++...+-+|.-||.|+..-..... +.+. . ......+.+..+ .+.||+|++|++...
T Consensus 10 G~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~-~~~~--~---~~~~l~~~~~~~~~~~yD~VIiD~pp~~ 79 (169)
T cd02037 10 GVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKM-WRGP--M---KMGAIKQFLTDVDWGELDYLVIDMPPGT 79 (169)
T ss_pred cCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHH-HhCc--c---hHHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 455554 45677776557899999999876432221 1110 0 011122233333 368999999998764
No 475
>PHA02518 ParA-like protein; Provisional
Probab=84.84 E-value=3.9 Score=32.79 Aligned_cols=72 Identities=18% Similarity=0.103 Sum_probs=39.6
Q ss_pred ccHHHHH--HHHHHHccCCCcEEEEEeCChhHH--HHHHHHhcCCCCcEEEEE--cchHHHhhhccCCccEEEEcCCcC
Q 041509 50 NVANATT--LALAAAAHQTGGRVVCILRRVEEY--KLSKKILGLDASHVEFVI--GDAQSLLLSHFREADFVLIDCNLE 122 (211)
Q Consensus 50 tg~G~st--l~la~a~~~~~g~v~tiE~~~~~~--~~Ar~~~~~~~~~V~~~~--gda~e~l~~l~~~fD~VfiD~~~~ 122 (211)
.|+|-+| +.||.++...+.+|..||.||+.- ..+...... ...+.... .+..+.+..+...||+|++|++..
T Consensus 10 GGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~~~d~viiD~p~~ 87 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEG-EPLIPVVRMGKSIRADLPKVASGYDYVVVDGAPQ 87 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhcccC-CCCCchhhccHHHHHHHHHHhccCCEEEEeCCCC
Confidence 3556655 446666665578999999998742 111111001 11122111 122334444567899999998765
No 476
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=84.83 E-value=4.7 Score=35.29 Aligned_cols=97 Identities=19% Similarity=0.130 Sum_probs=52.2
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHH-Hhc--CC-CCcEE-----EE-EcchHHHhhhccCCc
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKK-ILG--LD-ASHVE-----FV-IGDAQSLLLSHFREA 112 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~-~~~--~~-~~~V~-----~~-~gda~e~l~~l~~~f 112 (211)
+|.=| |+| ..+..+|..+...+-+|+.++.++.. +..++ .+. .. ..... +. ..+. + ....+
T Consensus 4 kI~Ii-G~G--~mG~~~A~~L~~~G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~ 74 (341)
T PRK08229 4 RICVL-GAG--SIGCYLGGRLAAAGADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A----ALATA 74 (341)
T ss_pred eEEEE-CCC--HHHHHHHHHHHhcCCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccCh-h----hccCC
Confidence 47777 665 33344444444435689999987643 33332 111 10 01111 11 1121 1 13579
Q ss_pred cEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCC
Q 041509 113 DFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAF 148 (211)
Q Consensus 113 D~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~ 148 (211)
|+||+-.......+.++.+.+.+.++-.++.+.|-+
T Consensus 75 D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~ 110 (341)
T PRK08229 75 DLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGV 110 (341)
T ss_pred CEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCC
Confidence 999998766666788888888887744344344544
No 477
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=84.77 E-value=24 Score=30.15 Aligned_cols=96 Identities=22% Similarity=0.170 Sum_probs=58.3
Q ss_pred hhCCCCeEEEEcccc-HHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEE
Q 041509 37 AGNNAQLMVVACANV-ANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFV 115 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg-~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~V 115 (211)
...+.+.||-. |+| +|..++.+|++. +.+|+.+..+++..+.+++ +. .+. ++...-.+......+.+|.+
T Consensus 159 ~~~~~~~vlI~-g~g~iG~~~~~~a~~~---G~~v~~~~~~~~~~~~~~~-~g--~~~--~~~~~~~~~~~~~~~~~d~v 229 (330)
T cd08245 159 GPRPGERVAVL-GIGGLGHLAVQYARAM---GFETVAITRSPDKRELARK-LG--ADE--VVDSGAELDEQAAAGGADVI 229 (330)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHH-hC--CcE--EeccCCcchHHhccCCCCEE
Confidence 34556788888 765 888777777775 5689999999988777744 22 111 11111111111123469988
Q ss_pred EEcC-CcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 116 LIDC-NLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 116 fiD~-~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+ |+ ... ...+.+.+.|+++|.++.+.
T Consensus 230 i-~~~~~~---~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 230 L-VTVVSG---AAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred E-ECCCcH---HHHHHHHHhcccCCEEEEEC
Confidence 7 43 222 35666677888889887654
No 478
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.77 E-value=6.8 Score=33.70 Aligned_cols=144 Identities=12% Similarity=0.165 Sum_probs=83.9
Q ss_pred eEEEEccccHHHHHHHHHHHccCC----CcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 43 LMVVACANVANATTLALAAAAHQT----GGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~----~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+|.=| |+ |..+-.|+.++.+. ..+|+.++.+++.++.+.+.+ + ++. ..+..+.+. .-|+||+.
T Consensus 4 ~IgfI-G~--G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~-g----~~~-~~~~~e~~~----~aDiIiLa 70 (272)
T PRK12491 4 QIGFI-GC--GNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY-G----ITI-TTNNNEVAN----SADILILS 70 (272)
T ss_pred eEEEE-Cc--cHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc-C----cEE-eCCcHHHHh----hCCEEEEE
Confidence 46667 65 45666666665432 236999999988776654432 1 222 344444432 46999999
Q ss_pred CCcCcHHHHHHHHHhcCCCCcEEEEEecCCCCC-------ceecC--CC----cEEEeecCCcEEEEEEeccCCCCccce
Q 041509 119 CNLENHEGVLRAVQAGNKPNGAVVVGYNAFRKG-------SWRSS--GS----KSQLLPIGEGLLVTRIAAASANKKSHW 185 (211)
Q Consensus 119 ~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~~-------~~~~~--~~----~~v~lpig~Gl~v~~~~~~~~~~~~~~ 185 (211)
.......+.++.+.+.+++ +.+++ + +-.| .+..+ ++ .++-.-+|.|++...........-+..
T Consensus 71 vkP~~~~~vl~~l~~~~~~-~~lvI-S--i~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~ 146 (272)
T PRK12491 71 IKPDLYSSVINQIKDQIKN-DVIVV-T--IAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKE 146 (272)
T ss_pred eChHHHHHHHHHHHHhhcC-CcEEE-E--eCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHH
Confidence 8877888888888887775 55555 3 1222 11111 11 122334788888776543322222445
Q ss_pred EEeccccCCceeeEEeec
Q 041509 186 IVKVDKCTGEEHVFRVRF 203 (211)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~ 203 (211)
+..+++.-|+..++.+..
T Consensus 147 v~~lf~~~G~~~~~~E~~ 164 (272)
T PRK12491 147 VLNIFNIFGQTEVVNEKL 164 (272)
T ss_pred HHHHHHcCCCEEEEcHHH
Confidence 666777777766655443
No 479
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.75 E-value=16 Score=32.33 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=66.0
Q ss_pred hCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHh---cCCC------CcEEEEEcchHHHhhhc
Q 041509 38 GNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKIL---GLDA------SHVEFVIGDAQSLLLSH 108 (211)
Q Consensus 38 ~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~---~~~~------~~V~~~~gda~e~l~~l 108 (211)
.+...+|.=+ |+|.--+ .+|..+.. .+.++.+..+++..+..++.- ..+. .++.+ ..|..+.+
T Consensus 4 ~~~~mkI~Ii-GaGa~G~--alA~~La~-~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a~--- 75 (341)
T PRK12439 4 AKREPKVVVL-GGGSWGT--TVASICAR-RGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEAA--- 75 (341)
T ss_pred ccCCCeEEEE-CCCHHHH--HHHHHHHH-CCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHHH---
Confidence 3455678888 7765444 44444433 347888889998887776532 1111 12322 23433332
Q ss_pred cCCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 109 FREADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 109 ~~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
...|+||+-.+.....+.++.+.+.++++..++.+-|-+..
T Consensus 76 -~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 76 -NCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred -hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 46799999888777888999999988876566666776654
No 480
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=84.74 E-value=20 Score=29.24 Aligned_cols=100 Identities=19% Similarity=0.101 Sum_probs=59.7
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCC--CCcEEEEEcchHHHhhhc--c
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLD--ASHVEFVIGDAQSLLLSH--F 109 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~--~~~V~~~~gda~e~l~~l--~ 109 (211)
....+.++|+-. | .+.|..+..++.+. +.+|+.++.+++..+.+++ +. . ...+.....+..+.+..+ .
T Consensus 100 ~~~~~g~~vlv~-g~~~~~g~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~ 173 (288)
T smart00829 100 ARLRPGESVLIH-AAAGGVGQAAIQLAQHL---GAEVFATAGSPEKRDFLRE-LG-IPDDHIFSSRDLSFADEILRATGG 173 (288)
T ss_pred hCCCCCCEEEEe-cCCcHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-cC-CChhheeeCCCccHHHHHHHHhCC
Confidence 344566777766 5 57777777777765 5689999999988888753 32 2 111222222333333222 3
Q ss_pred CCccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 110 READFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 110 ~~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..+|+++ |+-.. ...+...+.++++|.++.+.
T Consensus 174 ~~~d~vi-~~~~~---~~~~~~~~~l~~~g~~v~~g 205 (288)
T smart00829 174 RGVDVVL-NSLAG---EFLDASLRCLAPGGRFVEIG 205 (288)
T ss_pred CCcEEEE-eCCCH---HHHHHHHHhccCCcEEEEEc
Confidence 4689776 44322 34556677788888877543
No 481
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=84.72 E-value=6.1 Score=32.18 Aligned_cols=78 Identities=13% Similarity=0.178 Sum_probs=51.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH--hhhc-------cC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL--LLSH-------FR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~--l~~l-------~~ 110 (211)
..++||-+ |+ +|..+.++++.+...+.+|+.+..+++....+...+.....++.++.+|..+. +..+ .+
T Consensus 5 ~~~~ilIt-Ga-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 5 EGRVALVT-GA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCCEEEEc-CC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45678877 54 56667777777665577999999997766555554542234588888886542 1111 24
Q ss_pred CccEEEEcC
Q 041509 111 EADFVLIDC 119 (211)
Q Consensus 111 ~fD~VfiD~ 119 (211)
++|.|+..+
T Consensus 83 ~~d~vi~~a 91 (251)
T PRK12826 83 RLDILVANA 91 (251)
T ss_pred CCCEEEECC
Confidence 789998765
No 482
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=84.68 E-value=8.3 Score=31.57 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=53.0
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhhc---cC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLSH---FR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~l---~~ 110 (211)
+.++||=. |. +|+.+..+++.+...+.+|+.++.+++..+.....++....+++++.+|..+. +... .+
T Consensus 3 ~~~~vlIt-G~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 3 KGKVALVT-GA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCCEEEEE-CC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34678877 53 56777888887766677999999998877665555543345688888886432 1111 35
Q ss_pred CccEEEEcC
Q 041509 111 EADFVLIDC 119 (211)
Q Consensus 111 ~fD~VfiD~ 119 (211)
++|.|+..+
T Consensus 81 ~~d~vi~~a 89 (258)
T PRK12429 81 GVDILVNNA 89 (258)
T ss_pred CCCEEEECC
Confidence 789998765
No 483
>PTZ00357 methyltransferase; Provisional
Probab=84.66 E-value=3.6 Score=40.40 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=60.7
Q ss_pred eEEEEccccHHHHHHHHHHHccC--CCcEEEEEeCChhHHHHHHHHhc---CC-------CCcEEEEEcchHHHhhh---
Q 041509 43 LMVVACANVANATTLALAAAAHQ--TGGRVVCILRRVEEYKLSKKILG---LD-------ASHVEFVIGDAQSLLLS--- 107 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~--~~g~v~tiE~~~~~~~~Ar~~~~---~~-------~~~V~~~~gda~e~l~~--- 107 (211)
.|+-+ |+|=|-.--...+|+.. ..-+|++||.||..+...+.+.. .- .++|+++.+|-.+.-..
T Consensus 703 VImVV-GAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLL-GCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEE-cCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 47788 99999874443333322 14589999999876555544432 11 45799999998876321
Q ss_pred -------ccCCccEEEEc-----CCcCcHHHHHHHHHhcCCC
Q 041509 108 -------HFREADFVLID-----CNLENHEGVLRAVQAGNKP 137 (211)
Q Consensus 108 -------l~~~fD~VfiD-----~~~~~y~~~l~~~~~~L~p 137 (211)
..+++|+|+.. ++-+.-.+.++-+.+.|++
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhh
Confidence 12479999864 2334457788877777765
No 484
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=84.59 E-value=14 Score=32.47 Aligned_cols=101 Identities=20% Similarity=0.212 Sum_probs=59.9
Q ss_pred HhhCCCCeEEEEccc-cHHHHHHHHHHHccCCCc-EEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACAN-VANATTLALAAAAHQTGG-RVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~Gt-g~G~stl~la~a~~~~~g-~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
....+.++||-. |+ ++|..++.+|++. +. +|+.++.+++..+.+++ +. ....+.....+..+.+..+ ...
T Consensus 178 ~~~~~g~~vLI~-g~g~vG~a~i~lak~~---G~~~Vi~~~~~~~~~~~~~~-~g-~~~vv~~~~~~~~~~l~~~~~~~~ 251 (363)
T cd08279 178 ARVRPGDTVAVI-GCGGVGLNAIQGARIA---GASRIIAVDPVPEKLELARR-FG-ATHTVNASEDDAVEAVRDLTDGRG 251 (363)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHc---CCCcEEEEcCCHHHHHHHHH-hC-CeEEeCCCCccHHHHHHHHcCCCC
Confidence 334566788877 54 5788888888775 44 49999999888777753 22 2111111112333323323 356
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
+|+++ |+... ...++.+.+.|+++|.++...
T Consensus 252 vd~vl-d~~~~--~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 252 ADYAF-EAVGR--AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCEEE-EcCCC--hHHHHHHHHHhhcCCeEEEEe
Confidence 99775 44321 144666777788889887654
No 485
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=84.50 E-value=30 Score=31.10 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=61.9
Q ss_pred CChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCCh-hHHHHHHHHhcCCCCcEEEEEcchH
Q 041509 24 KEPNEAEFISALAAGNNAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRV-EEYKLSKKILGLDASHVEFVIGDAQ 102 (211)
Q Consensus 24 ~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~-~~~~~Ar~~~~~~~~~V~~~~gda~ 102 (211)
-.|....|=..++.....+.++=. .+|++.....+...+. ++.+|+..+..- .....+...++...-+++++.-+..
T Consensus 48 gnPt~~~lE~~lA~l~g~~~~~~~-~sG~~Ai~~al~all~-~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~ 125 (377)
T TIGR01324 48 GTLTHFALQDAMCELEGGAGCYLY-PSGLAAVTNSILAFVK-AGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIG 125 (377)
T ss_pred CCccHHHHHHHHHHHhCCCcEEEE-CcHHHHHHHHHHHhcC-CCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCH
Confidence 335444444445554455666655 4444443333333343 467887766443 2233333333311123443322111
Q ss_pred HHhhh-ccCCccEEEEcCCcC--cHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 041509 103 SLLLS-HFREADFVLIDCNLE--NHEGVLRAVQAGNKPNGAVVVGYNAFRKG 151 (211)
Q Consensus 103 e~l~~-l~~~fD~VfiD~~~~--~y~~~l~~~~~~L~pgG~viv~dn~~~~~ 151 (211)
+.+.+ +..+..+|+++.... .....++.+.++.+..|.++++||++..+
T Consensus 126 e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g 177 (377)
T TIGR01324 126 EDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAG 177 (377)
T ss_pred HHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 33332 345678999875432 22333444444444468888899998765
No 486
>PRK07326 short chain dehydrogenase; Provisional
Probab=84.49 E-value=8 Score=31.34 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=50.9
Q ss_pred CCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHH------hhhc---cCC
Q 041509 41 AQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSL------LLSH---FRE 111 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~------l~~l---~~~ 111 (211)
.+.+|-+ | ++|..+..++..+...+.+|+.++.+++......+.+... .+++++.+|..+. +... .++
T Consensus 6 ~~~ilIt-G-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 6 GKVALIT-G-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCEEEEE-C-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4678888 6 4666677777776555779999999987766655555421 5688888886432 1111 257
Q ss_pred ccEEEEcC
Q 041509 112 ADFVLIDC 119 (211)
Q Consensus 112 fD~VfiD~ 119 (211)
+|.||..+
T Consensus 83 ~d~vi~~a 90 (237)
T PRK07326 83 LDVLIANA 90 (237)
T ss_pred CCEEEECC
Confidence 89998764
No 487
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=84.49 E-value=18 Score=32.18 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=59.6
Q ss_pred hhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEE-------E----------
Q 041509 37 AGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEF-------V---------- 97 (211)
Q Consensus 37 ~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~-------~---------- 97 (211)
...+.++||=. | .++|..++.+|++. +.+++.++.+++..+.+++ +. ...-+.. .
T Consensus 190 ~~~~g~~vlV~-ga~g~iG~a~~~lak~~---G~~vv~~~~s~~~~~~~~~-~G-~~~~i~~~~~~~~~~~~~~~~~~~~ 263 (393)
T cd08246 190 TVKPGDNVLIW-GASGGLGSMAIQLARAA---GANPVAVVSSEEKAEYCRA-LG-AEGVINRRDFDHWGVLPDVNSEAYT 263 (393)
T ss_pred cCCCCCEEEEE-CCCcHHHHHHHHHHHHc---CCeEEEEeCCHHHHHHHHH-cC-CCEEEcccccccccccccccchhhh
Confidence 34556788888 6 47787777788775 5678889999998888876 33 0000110 0
Q ss_pred ----E-cchHHHhhhc-c-C-CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEec
Q 041509 98 ----I-GDAQSLLLSH-F-R-EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 98 ----~-gda~e~l~~l-~-~-~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
. -...+.+..+ . . .+|+++ |+... ..++...+.++++|.++.+.+
T Consensus 264 ~~~~~~~~~~~~v~~l~~~~~g~d~vi-d~~g~---~~~~~~~~~l~~~G~~v~~g~ 316 (393)
T cd08246 264 AWTKEARRFGKAIWDILGGREDPDIVF-EHPGR---ATFPTSVFVCDRGGMVVICAG 316 (393)
T ss_pred hhhhccchHHHHHHHHhCCCCCCeEEE-ECCch---HhHHHHHHHhccCCEEEEEcc
Confidence 0 0011122222 2 2 689776 65332 345666777888898877543
No 488
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=84.48 E-value=6.4 Score=36.79 Aligned_cols=99 Identities=12% Similarity=0.004 Sum_probs=64.1
Q ss_pred eEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEE-----
Q 041509 43 LMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLI----- 117 (211)
Q Consensus 43 ~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~Vfi----- 117 (211)
++|.+ |||---.+..+-... --.|+++|.++-.++.+...-..-..-.++...|.....-. +++||.|+.
T Consensus 51 ~~l~l-GCGNS~l~e~ly~~G---~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fe-dESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQL-GCGNSELSEHLYKNG---FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFE-DESFDIVIDKGTLD 125 (482)
T ss_pred eeEee-cCCCCHHHHHHHhcC---CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCC-CcceeEEEecCccc
Confidence 68899 887665444444332 24799999999877766544321234588888888766432 567777654
Q ss_pred ----cCCcC----cHHHHHHHHHhcCCCCcEEEEEec
Q 041509 118 ----DCNLE----NHEGVLRAVQAGNKPNGAVVVGYN 146 (211)
Q Consensus 118 ----D~~~~----~y~~~l~~~~~~L~pgG~viv~dn 146 (211)
|.+.. ...+++..+.++|+|+|..+...-
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 22211 235678888889999998665543
No 489
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=84.34 E-value=1.6 Score=40.62 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=60.2
Q ss_pred hhCCCCeEEEEccccHHHHHHHHHHHccCCCcEEE------EEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccC
Q 041509 37 AGNNAQLMVVACANVANATTLALAAAAHQTGGRVV------CILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFR 110 (211)
Q Consensus 37 ~~~~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~------tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~ 110 (211)
...+.++|+-| |||.=- ...|.-++..+-.|+ .||.+....+.|++. ++ ..++..+.++
T Consensus 32 ~~LkgKtIaII-GyGSqG--~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d--GF------~v~~~~Ea~~---- 96 (487)
T PRK05225 32 SYLKGKKIVIV-GCGAQG--LNQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN--GF------KVGTYEELIP---- 96 (487)
T ss_pred HHhCCCEEEEE-ccCHHH--HHHhCCCccccceeEEeccccccccccchHHHHHhc--CC------ccCCHHHHHH----
Confidence 33466899999 876533 344444444455566 566666666666542 32 2355666554
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
..|+|++-.+......+++.+.+.|+||..+..++
T Consensus 97 ~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 97 QADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred hCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecC
Confidence 58999987665556667799999999977666544
No 490
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=84.31 E-value=9.1 Score=31.28 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=54.2
Q ss_pred CCeEEEEccccHHHHHHH--HHHHccCCCc--EEEEEeC-ChhHHHHHHHHhcCCCCcEEEEEc----chHHH----hhh
Q 041509 41 AQLMVVACANVANATTLA--LAAAAHQTGG--RVVCILR-RVEEYKLSKKILGLDASHVEFVIG----DAQSL----LLS 107 (211)
Q Consensus 41 ~~~VLEi~Gtg~G~stl~--la~a~~~~~g--~v~tiE~-~~~~~~~Ar~~~~~~~~~V~~~~g----da~e~----l~~ 107 (211)
|+.|+=++-||+|-+|.. ||..+...+. .++|.|. .....++.+.+.+- -.+.+... |..+. +..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~--l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEI--LGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHH--HTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHH--hccccchhhcchhhHHHHHHHHHH
Confidence 344555523888887655 4444432233 3577884 44566666666651 12555443 23232 222
Q ss_pred c-cCCccEEEEcCCcCc-----HHHHHHHHHhcCCCCcEEEEEe
Q 041509 108 H-FREADFVLIDCNLEN-----HEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 108 l-~~~fD~VfiD~~~~~-----y~~~l~~~~~~L~pgG~viv~d 145 (211)
. .+.+|+|++|..-.. ..+.++.+.+.+.|--.++|.+
T Consensus 79 ~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVls 122 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLS 122 (196)
T ss_dssp HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEE
T ss_pred HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEe
Confidence 2 467999999975431 2334445555555644555544
No 491
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=84.25 E-value=23 Score=29.53 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=57.3
Q ss_pred HhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc--cCC
Q 041509 36 AAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH--FRE 111 (211)
Q Consensus 36 ~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l--~~~ 111 (211)
....+.+.|+=. | .+.|..++.++.+. +.+|+.++.+++..+.+++ + +....+.....+..+.+..+ .+.
T Consensus 140 ~~~~~g~~vlI~-g~~~~~g~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (325)
T cd08253 140 AGAKAGETVLVH-GGSGAVGHAAVQLARWA---GARVIATASSAEGAELVRQ-A-GADAVFNYRAEDLADRILAATAGQG 213 (325)
T ss_pred hCCCCCCEEEEE-cCCchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-c-CCCEEEeCCCcCHHHHHHHHcCCCc
Confidence 444566778776 5 56777777777664 6789999999888777754 2 22111221122222222222 347
Q ss_pred ccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEE
Q 041509 112 ADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 112 fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~ 144 (211)
+|+++-..... .++...+.++++|.++.+
T Consensus 214 ~d~vi~~~~~~----~~~~~~~~l~~~g~~v~~ 242 (325)
T cd08253 214 VDVIIEVLANV----NLAKDLDVLAPGGRIVVY 242 (325)
T ss_pred eEEEEECCchH----HHHHHHHhhCCCCEEEEE
Confidence 99998433322 244555667778877654
No 492
>PLN02650 dihydroflavonol-4-reductase
Probab=84.22 E-value=5.2 Score=35.03 Aligned_cols=78 Identities=14% Similarity=0.063 Sum_probs=51.6
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc--CCCCcEEEEEcchHHH--hhhccCCccEE
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG--LDASHVEFVIGDAQSL--LLSHFREADFV 115 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~--~~~~~V~~~~gda~e~--l~~l~~~fD~V 115 (211)
..++||-. .|+|+.+.++++.+...+-+|+++..++........... +...+++++.+|..+. +......+|.|
T Consensus 4 ~~k~iLVT--GatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~V 81 (351)
T PLN02650 4 QKETVCVT--GASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGV 81 (351)
T ss_pred CCCEEEEe--CCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEE
Confidence 44678888 468999999998887656799988887655443322222 2224689999997643 33333468988
Q ss_pred EEcC
Q 041509 116 LIDC 119 (211)
Q Consensus 116 fiD~ 119 (211)
|.-+
T Consensus 82 iH~A 85 (351)
T PLN02650 82 FHVA 85 (351)
T ss_pred EEeC
Confidence 8654
No 493
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.19 E-value=4.8 Score=34.83 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=55.5
Q ss_pred CeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhc-C---CC--------------CcEEEEEcchHH
Q 041509 42 QLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILG-L---DA--------------SHVEFVIGDAQS 103 (211)
Q Consensus 42 ~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~-~---~~--------------~~V~~~~gda~e 103 (211)
++|--| |+|+ .+..+|..+...+-+|+.+|.+++.++.+++.+. . +. .+++ ...|. +
T Consensus 6 ~~V~Vi-GaG~--mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~-~ 80 (286)
T PRK07819 6 QRVGVV-GAGQ--MGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDL-G 80 (286)
T ss_pred cEEEEE-cccH--HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCH-H
Confidence 467778 7753 3333333322347899999999999988776654 1 11 1122 12222 2
Q ss_pred HhhhccCCccEEEEcCCcC--cHHHHHHHHHhcC-CCCcEEEEEecCCC
Q 041509 104 LLLSHFREADFVLIDCNLE--NHEGVLRAVQAGN-KPNGAVVVGYNAFR 149 (211)
Q Consensus 104 ~l~~l~~~fD~VfiD~~~~--~y~~~l~~~~~~L-~pgG~viv~dn~~~ 149 (211)
. -...|+|+-...-. .....+..+...+ +| +.+++ .|...
T Consensus 81 ~----~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~-~~il~-snTS~ 123 (286)
T PRK07819 81 D----FADRQLVIEAVVEDEAVKTEIFAELDKVVTDP-DAVLA-SNTSS 123 (286)
T ss_pred H----hCCCCEEEEecccCHHHHHHHHHHHHHhhCCC-CcEEE-ECCCC
Confidence 1 24579888654322 2356777777776 55 66554 66443
No 494
>PRK07806 short chain dehydrogenase; Provisional
Probab=84.14 E-value=21 Score=29.06 Aligned_cols=103 Identities=15% Similarity=0.082 Sum_probs=59.6
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChh-HHHHHHHHhcCCCCcEEEEEcchHHHh------hhc---c
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVE-EYKLSKKILGLDASHVEFVIGDAQSLL------LSH---F 109 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~-~~~~Ar~~~~~~~~~V~~~~gda~e~l------~~l---~ 109 (211)
+++++|-. |+ +|..+..+++.+...+.+|+.+..++. ..+.....++....++.++.+|..+.- ... .
T Consensus 5 ~~k~vlIt-Ga-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVT-GS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEE-CC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 45788888 64 344556666666555678988887643 333333334322346788888865421 111 2
Q ss_pred CCccEEEEcCCcC-------------c---HHHHHHHHHhcCCCCcEEEEE
Q 041509 110 READFVLIDCNLE-------------N---HEGVLRAVQAGNKPNGAVVVG 144 (211)
Q Consensus 110 ~~fD~VfiD~~~~-------------~---y~~~l~~~~~~L~pgG~viv~ 144 (211)
+.+|.++..+... + ....++.+.+.++.+|.++..
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 4789988765321 1 245677777766655666554
No 495
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.98 E-value=8.3 Score=35.10 Aligned_cols=75 Identities=20% Similarity=0.314 Sum_probs=46.4
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCCh-hHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEc
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRV-EEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLID 118 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~-~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD 118 (211)
+.++|+=+ |.|. .+..+|+.+...+..|+.+|.++ +..+...+.+. ...++++.++..+. ..+.+|+|+..
T Consensus 4 ~~k~v~ii-G~g~--~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~---~~~~~d~vv~~ 75 (450)
T PRK14106 4 KGKKVLVV-GAGV--SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELG--ELGIELVLGEYPEE---FLEGVDLVVVS 75 (450)
T ss_pred CCCEEEEE-CCCH--HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHH--hcCCEEEeCCcchh---HhhcCCEEEEC
Confidence 45778888 6544 45566666666688999999985 22222112222 12366777777653 23579999987
Q ss_pred CCcC
Q 041509 119 CNLE 122 (211)
Q Consensus 119 ~~~~ 122 (211)
+...
T Consensus 76 ~g~~ 79 (450)
T PRK14106 76 PGVP 79 (450)
T ss_pred CCCC
Confidence 6543
No 496
>PRK08064 cystathionine beta-lyase; Provisional
Probab=83.96 E-value=17 Score=32.70 Aligned_cols=121 Identities=13% Similarity=0.148 Sum_probs=63.5
Q ss_pred cCCChhHHHHHHHHHhhCCCCeEEEEccccHHHHHHHHHH-HccCCCcEEEEEeCChh-HHHHHHHHhcCCCCcEEEEEc
Q 041509 22 KAKEPNEAEFISALAAGNNAQLMVVACANVANATTLALAA-AAHQTGGRVVCILRRVE-EYKLSKKILGLDASHVEFVIG 99 (211)
Q Consensus 22 ~~~~~~~~~lL~~l~~~~~~~~VLEi~Gtg~G~stl~la~-a~~~~~g~v~tiE~~~~-~~~~Ar~~~~~~~~~V~~~~g 99 (211)
+.-.|...++-..++...+.+..+=+ ++|+. ++.++- .+. ++.+|+..+..-. ......+.++...-++.++.-
T Consensus 50 r~~~p~~~~le~~lA~l~g~~~~v~~-~sG~~--ai~~~l~~l~-~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 125 (390)
T PRK08064 50 RSGNPTREALEDIIAELEGGTKGFAF-ASGMA--AISTAFLLLS-KGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDM 125 (390)
T ss_pred CCCChhHHHHHHHHHHHhCCCCeEEE-CCHHH--HHHHHHHHhC-CCCEEEEccCccchHHHHHHHHHHHcCCEEEEECC
Confidence 34556676776677666555554444 55554 444433 443 3677877765322 233333323312233444433
Q ss_pred -chHHHhhhccCCccEEEEcCCcC------cHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 041509 100 -DAQSLLLSHFREADFVLIDCNLE------NHEGVLRAVQAGNKPNGAVVVGYNAFRK 150 (211)
Q Consensus 100 -da~e~l~~l~~~fD~VfiD~~~~------~y~~~l~~~~~~L~pgG~viv~dn~~~~ 150 (211)
|..++...+..+.++|++..... +..+..+.+.+ .|.++++|+++..
T Consensus 126 ~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~----~g~~vvvD~a~~~ 179 (390)
T PRK08064 126 TNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKA----IGCLTFVDNTFLT 179 (390)
T ss_pred CCHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHH----cCCEEEEECCCCc
Confidence 34444333345678999875431 33444444443 4778888998654
No 497
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=83.94 E-value=17 Score=32.32 Aligned_cols=103 Identities=19% Similarity=0.149 Sum_probs=75.1
Q ss_pred HHHhhCCCCeEEEEcc--ccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhc-cC
Q 041509 34 ALAAGNNAQLMVVACA--NVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSH-FR 110 (211)
Q Consensus 34 ~l~~~~~~~~VLEi~G--tg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l-~~ 110 (211)
...+.+..+.|+-- + .++|....-||+. .+.+|+++=-.++..+.+++.+. +..-|.....|..+.|++. .+
T Consensus 144 ~igqpk~GetvvVS-aAaGaVGsvvgQiAKl---kG~rVVGiaGg~eK~~~l~~~lG-fD~~idyk~~d~~~~L~~a~P~ 218 (340)
T COG2130 144 DIGQPKAGETVVVS-AAAGAVGSVVGQIAKL---KGCRVVGIAGGAEKCDFLTEELG-FDAGIDYKAEDFAQALKEACPK 218 (340)
T ss_pred HhcCCCCCCEEEEE-ecccccchHHHHHHHh---hCCeEEEecCCHHHHHHHHHhcC-CceeeecCcccHHHHHHHHCCC
Confidence 33445556666655 3 4567667778874 38899999999999998887655 3445777777888888765 67
Q ss_pred CccEEEEcCCcCcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 111 EADFVLIDCNLENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 111 ~fD~VfiD~~~~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
.+|+.|=+-.. +.++.++++|++.+++.+|-
T Consensus 219 GIDvyfeNVGg----~v~DAv~~~ln~~aRi~~CG 249 (340)
T COG2130 219 GIDVYFENVGG----EVLDAVLPLLNLFARIPVCG 249 (340)
T ss_pred CeEEEEEcCCc----hHHHHHHHhhccccceeeee
Confidence 89998855443 57888888888888888764
No 498
>PRK07774 short chain dehydrogenase; Provisional
Probab=83.91 E-value=8.2 Score=31.58 Aligned_cols=79 Identities=19% Similarity=0.158 Sum_probs=50.7
Q ss_pred CCCeEEEEccccHHHHHHHHHHHccCCCcEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHh--h----h---ccC
Q 041509 40 NAQLMVVACANVANATTLALAAAAHQTGGRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLL--L----S---HFR 110 (211)
Q Consensus 40 ~~~~VLEi~Gtg~G~stl~la~a~~~~~g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l--~----~---l~~ 110 (211)
..+++|=+ | ++|+.+..+++.+...+.+|+.++.+++..+.....+.....++.++..|..+.- . . ..+
T Consensus 5 ~~k~vlIt-G-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVT-G-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEE-C-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 34678877 6 4566677787777666789999999987655554444422345667777765331 1 1 135
Q ss_pred CccEEEEcCC
Q 041509 111 EADFVLIDCN 120 (211)
Q Consensus 111 ~fD~VfiD~~ 120 (211)
++|.||..+.
T Consensus 83 ~id~vi~~ag 92 (250)
T PRK07774 83 GIDYLVNNAA 92 (250)
T ss_pred CCCEEEECCC
Confidence 7899997654
No 499
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=83.87 E-value=14 Score=34.22 Aligned_cols=121 Identities=13% Similarity=0.115 Sum_probs=69.9
Q ss_pred CCCCeEEEEcc-------ccHHHHHHHHHHHccCCCcEEEEEe-CChhHHHHHHHHhcCCCCcEEEEE----cchHHHhh
Q 041509 39 NNAQLMVVACA-------NVANATTLALAAAAHQTGGRVVCIL-RRVEEYKLSKKILGLDASHVEFVI----GDAQSLLL 106 (211)
Q Consensus 39 ~~~~~VLEi~G-------tg~G~stl~la~a~~~~~g~v~tiE-~~~~~~~~Ar~~~~~~~~~V~~~~----gda~e~l~ 106 (211)
.+|..|+=+ | |-+|-.+.||-..- ..--+++.| ..|.++++.+..... -.|.|.. -|+.++..
T Consensus 98 ~~P~vImmv-GLQGsGKTTt~~KLA~~lkk~~--~kvllVaaD~~RpAA~eQL~~La~q--~~v~~f~~~~~~~Pv~Iak 172 (451)
T COG0541 98 KPPTVILMV-GLQGSGKTTTAGKLAKYLKKKG--KKVLLVAADTYRPAAIEQLKQLAEQ--VGVPFFGSGTEKDPVEIAK 172 (451)
T ss_pred CCCeEEEEE-eccCCChHhHHHHHHHHHHHcC--CceEEEecccCChHHHHHHHHHHHH--cCCceecCCCCCCHHHHHH
Confidence 346667777 6 44444444554411 123367778 567777777776551 1122222 23444432
Q ss_pred ----hc-cCCccEEEEcCCcCc-----HHHHHHHHHhcCCCCcEEEEEecCCCCC------cee-cCCCcEEEee
Q 041509 107 ----SH-FREADFVLIDCNLEN-----HEGVLRAVQAGNKPNGAVVVGYNAFRKG------SWR-SSGSKSQLLP 164 (211)
Q Consensus 107 ----~l-~~~fD~VfiD~~~~~-----y~~~l~~~~~~L~pgG~viv~dn~~~~~------~~~-~~~~~~v~lp 164 (211)
.. ...||+|++|..-+. ..+-++.+...++|.=.++|+|-+.-.. .|. .-.+..++++
T Consensus 173 ~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 173 AALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEE
Confidence 11 467999999986552 3556677777899998899888655433 132 2445566654
No 500
>PRK08507 prephenate dehydrogenase; Validated
Probab=83.85 E-value=4.8 Score=34.36 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=54.6
Q ss_pred EEEEccccHHHHHHHHHHHccCCC--cEEEEEeCChhHHHHHHHHhcCCCCcEEEEEcchHHHhhhccCCccEEEEcCCc
Q 041509 44 MVVACANVANATTLALAAAAHQTG--GRVVCILRRVEEYKLSKKILGLDASHVEFVIGDAQSLLLSHFREADFVLIDCNL 121 (211)
Q Consensus 44 VLEi~Gtg~G~stl~la~a~~~~~--g~v~tiE~~~~~~~~Ar~~~~~~~~~V~~~~gda~e~l~~l~~~fD~VfiD~~~ 121 (211)
|.=| | .|..+..++.++...+ .+|+.+|.+++..+.+++ .+..+. ..+..+. .+ .|+||+..+.
T Consensus 3 I~iI-G--~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~--~g~~~~----~~~~~~~----~~-aD~Vilavp~ 68 (275)
T PRK08507 3 IGII-G--LGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE--LGLVDE----IVSFEEL----KK-CDVIFLAIPV 68 (275)
T ss_pred EEEE-c--cCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH--CCCCcc----cCCHHHH----hc-CCEEEEeCcH
Confidence 5556 5 4566666766665422 379999999988777643 122111 1232222 23 8999999888
Q ss_pred CcHHHHHHHHHhcCCCCcEEEEEe
Q 041509 122 ENHEGVLRAVQAGNKPNGAVVVGY 145 (211)
Q Consensus 122 ~~y~~~l~~~~~~L~pgG~viv~d 145 (211)
....+.++.+.+ +++ |.+++ |
T Consensus 69 ~~~~~~~~~l~~-l~~-~~iv~-d 89 (275)
T PRK08507 69 DAIIEILPKLLD-IKE-NTTII-D 89 (275)
T ss_pred HHHHHHHHHHhc-cCC-CCEEE-E
Confidence 888888888888 776 55555 5
Done!