BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041510
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 164 bits (414), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 135/223 (60%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y+++ Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 7 YQEDIHTYLREMEV--KCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 63
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 64 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 123
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F + NCK E L+ +L ELSL+D L
Sbjct: 124 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCK-----VESLAMFLGELSLIDADPYLK 178
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPSL+A ++ L+ + + + P S QT GY LK C
Sbjct: 179 YLPSLIAGAAFHLALYTVTGQSWPESLAQQT--GYTLESLKPC 219
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 135/223 (60%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y+++ Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 4 YQEDIHTYLREMEV--KCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 120
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F + NCK E L+ +L ELSL+D L
Sbjct: 121 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCK-----VESLAMFLGELSLIDADPYLK 175
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPSL+A ++ L+ + + + P S QT GY LK C
Sbjct: 176 YLPSLIAGAAFHLALYTVTGQSWPESLAQQT--GYTLESLKPC 216
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 135/223 (60%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y+++ Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 4 YQEDIHTYLREMEV--KCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 120
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F + NCK E L+ +L ELSL+D L
Sbjct: 121 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCK-----VESLAMFLGELSLIDADPYLK 175
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPSL+A ++ L+ + + + P S QT GY LK C
Sbjct: 176 YLPSLIAGAAFHLALYTVTGQSWPESLAQQT--GYTLESLKPC 216
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 134/223 (60%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 179
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++AA++ L+ + + + W L +GY LK C
Sbjct: 180 YLPSVIAAAAFHLALYTVTGQ--SWPESLIRKTGYTLESLKPC 220
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 134/223 (60%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 179
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++AA++ L+ + + + W L +GY LK C
Sbjct: 180 YLPSVIAAAAFHLALYTVTGQ--SWPESLVQKTGYTLETLKPC 220
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 134/223 (60%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 179
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++AA++ L+ + + + W L +GY LK C
Sbjct: 180 YLPSVIAAAAFHLALYTVTGQ--SWPESLVQKTGYTLETLKPC 220
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 134/223 (60%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 179
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++AA++ L+ + + + W L +GY LK C
Sbjct: 180 YLPSVIAAAAFHLALYTVTGQ--SWPESLVQKTGYTLETLKPC 220
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 134/223 (60%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 179
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++AA++ L+ + + + W L +GY LK C
Sbjct: 180 YLPSVIAAAAFHLALYTVTGQ--SWPESLVQKTGYTLETLKPC 220
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 134/223 (60%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 179
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++AA++ L+ + + + W L +GY LK C
Sbjct: 180 YLPSVIAAAAFHLALYTVTGQ--SWPESLVQKTGYTLETLKPC 220
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 134/223 (60%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 179
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++AA++ L+ + + + W L +GY LK C
Sbjct: 180 YLPSVIAAAAFHLALYTVTGQ--SWPESLVQKTGYTLETLKPC 220
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 133/223 (59%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 7 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 63
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 64 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 123
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 124 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 178
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++A ++ L+ + + + W L +GY LK C
Sbjct: 179 YLPSVIAGAAFHLALYTVTGQ--SWPESLIRKTGYTLESLKPC 219
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 160 bits (406), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 133/223 (59%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 11 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 67
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 68 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 127
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 128 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 182
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++A ++ L+ + + + W L +GY LK C
Sbjct: 183 YLPSVIAGAAFHLALYTVTGQ--SWPESLIRKTGYTLESLKPC 223
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 160 bits (406), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 133/223 (59%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 6 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 62
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 63 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 123 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 177
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++A ++ L+ + + + W L +GY LK C
Sbjct: 178 YLPSVIAGAAFHLALYTVTGQ--SWPESLIRKTGYTLESLKPC 218
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 160 bits (406), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 133/223 (59%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 6 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 62
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 63 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 123 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 177
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++A ++ L+ + + + W L +GY LK C
Sbjct: 178 YLPSVIAGAAFHLALYTVTGQ--SWPESLIRKTGYTLESLKPC 218
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 160 bits (406), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 133/223 (59%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 2 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 58
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 59 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 118
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 119 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 173
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++A ++ L+ + + + W L +GY LK C
Sbjct: 174 YLPSVIAGAAFHLALYTVTGQ--SWPESLIRKTGYTLESLKPC 214
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 160 bits (405), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 133/223 (59%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 4 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 120
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 121 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 175
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++A ++ L+ + + + W L +GY LK C
Sbjct: 176 YLPSVIAGAAFHLALYTVTGQ--SWPESLIRKTGYTLESLKPC 216
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 160 bits (405), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 133/223 (59%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 4 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 120
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 121 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 175
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++A ++ L+ + + + W L +GY LK C
Sbjct: 176 YLPSVIAGAAFHLALYTVTGQ--SWPESLIRKTGYTLESLKPC 216
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 160 bits (405), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 133/223 (59%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 5 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 61
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 62 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 121
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 122 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 176
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++A ++ L+ + + + W L +GY LK C
Sbjct: 177 YLPSVIAGAAFHLALYTVTGQ--SWPESLIRKTGYTLESLKPC 217
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 133/221 (60%), Gaps = 12/221 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 179
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLK 333
YLPS++AA++ L+ + + + W L +GY LK
Sbjct: 180 YLPSVIAAAAFHLALYTVTGQ--SWPESLIRKTGYTLESLK 218
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 133/223 (59%), Gaps = 12/223 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y I+ +LR +E+ K +P Y++K Q DI+ +MR LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
V+Y+DRFLSS ++ R KLQL+G ML+ASK+EEI PP V +F YITD+TY
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 235 XXXXLEFLNFEMGSPTTKSFL-RIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLW 292
L+ L F++ +PT FL + F NCK E L+ +L ELSL+D L
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK-----VESLAMFLGELSLIDADPYLK 179
Query: 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKEC 335
YLPS++AA++ L+ + + + W L +GY K C
Sbjct: 180 YLPSVIAAAAFHLALYTVTGQ--SWPESLIRKTGYTLETSKPC 220
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 123/213 (57%), Gaps = 11/213 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y IY +LR LE RP YL + +++ NMR L+DWLV+V +++L+ +T+Y+
Sbjct: 6 YVKDIYAYLRQLEAAQAVRP--KYL--LGREVTGNMRAILIDWLVQVQMKFRLLQETMYM 61
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
TVS +DRF+ ++++ + LQL+GV M IASKYEE+ PP + DF ++TDNTY
Sbjct: 62 TVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQM 121
Query: 235 XXXXLEFLNFEMGSPTTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYGCLWYL 294
L LNF +G P FLR +++ E + ++ L+ YL EL++LDY + +
Sbjct: 122 EMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQ-----HTLAKYLMELTMLDYDMVHFP 176
Query: 295 PSLVAASSIFLSRFIMQPKIHPWSWELQTFSGY 327
PS +AA + L+ I+ W+ LQ + Y
Sbjct: 177 PSQIAAGAFSLALKILDNG--EWTPTLQHYLSY 207
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 124/218 (56%), Gaps = 11/218 (5%)
Query: 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYL 174
Y IY +LR LE E RP YL + +++ NMR L+DWLV+V +++L+ +T+Y+
Sbjct: 4 YVKDIYAYLRQLEEEQAVRP--KYL--LGREVTGNMRAILIDWLVQVQMKFRLLQETMYM 59
Query: 175 TVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXX 234
TVS +DRF+ ++ + + LQL+GV M IASKYEE+ PP + DF ++TDNTY
Sbjct: 60 TVSIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQM 119
Query: 235 XXXXLEFLNFEMGSPTTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYGCLWYL 294
L LNF +G P FLR +++ E + ++ L+ YL EL++LDY + +
Sbjct: 120 EMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQ-----HTLAKYLMELTMLDYDMVHFP 174
Query: 295 PSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDL 332
PS +AA + L+ I+ W+ LQ + Y L
Sbjct: 175 PSQIAAGAFCLALKILDNG--EWTPTLQHYLSYTEESL 210
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 1/178 (0%)
Query: 126 LEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSS 185
L +E++ P +Y + VQ +I +MR+ L W++EV EE + + L ++Y+DR+LS
Sbjct: 46 LRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSC 105
Query: 186 HALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXXXXXXLEFLNFE 245
+ +LQLLG CML+ASK E +P +E C TD+ L L ++
Sbjct: 106 VPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWD 165
Query: 246 MGSPTTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSI 303
+ + FL + L+ + +LA L DY Y PS++A SI
Sbjct: 166 LAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLA-LCATDYTFAMYPPSMIATGSI 222
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 18/197 (9%)
Query: 149 NMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHA-LSRNKLQLLGVCCMLIASKY 207
MR L+DWL+EV E YKL +T YL + DR++++ + + LQL+G+ + IA+K
Sbjct: 48 KMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKL 107
Query: 208 EEISPPHVEDFCYITDNTYXXXXXXXXXXXXLEFLNFEMGSPTTKSFLRIFTRVTEENCK 267
EEI PP + F Y+TD ++ L + + T S+L ++ +V N
Sbjct: 108 EEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDL 167
Query: 268 KPDLLYEF---LSCYLAE---LSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWEL 321
LL ++ + +AE L +LD CL + ++AAS+++ H S EL
Sbjct: 168 HEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALY----------HFSSSEL 217
Query: 322 -QTFSGYRPSDLKECHK 337
Q SGY+ D++ C K
Sbjct: 218 MQKVSGYQWCDIENCVK 234
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%)
Query: 126 LEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSS 185
L+ E+ P +Y + VQ ++ +MR+ + W++EV EE K + L ++Y+DRFLS
Sbjct: 18 LKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSL 77
Query: 186 HALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXXXXXXLEFLNFE 245
+ +++LQLLG CM +ASK +E P E C TDN+ + L +
Sbjct: 78 EPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWN 137
Query: 246 MGSPTTKSFLRIF 258
+ + T F+ F
Sbjct: 138 LAAMTPHDFIEHF 150
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%)
Query: 126 LEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSS 185
L+ E+ P +Y + VQ ++ +MR+ + W++EV EE K + L ++Y+DRFLS
Sbjct: 32 LKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSL 91
Query: 186 HALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXXXXXXLEFLNFE 245
+ +++LQLLG CM +ASK +E P E C TDN+ + L +
Sbjct: 92 EPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWN 151
Query: 246 MGSPTTKSFLRIF 258
+ + T F+ F
Sbjct: 152 LAAMTPHDFIEHF 164
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 64/135 (47%)
Query: 121 KHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVD 180
+ L +L++ + P L ++Q +++++ R L+ W+ + E ++L L+VS +D
Sbjct: 22 RVLNNLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILD 81
Query: 181 RFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXXXXXXLE 240
R+L ++ LQ +G C+LI SK + P V Y++ + + LE
Sbjct: 82 RYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILE 141
Query: 241 FLNFEMGSPTTKSFL 255
L ++ + FL
Sbjct: 142 ALKWDTEAVLATDFL 156
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 64/135 (47%)
Query: 121 KHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVD 180
+ L +L++ + P L ++Q +++++ R L+ W+ + E ++L L+VS +D
Sbjct: 1 RVLNNLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILD 60
Query: 181 RFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYXXXXXXXXXXXXLE 240
R+L ++ LQ +G C+LI SK + P V Y++ + + LE
Sbjct: 61 RYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILE 120
Query: 241 FLNFEMGSPTTKSFL 255
L ++ + FL
Sbjct: 121 ALKWDTEAVLATDFL 135
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|G Chain G, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 257
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 126 LEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSS 185
LEIE + + Q ++ +MR+ L W+ V +EY L + + L ++ +DR L
Sbjct: 26 LEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLI 85
Query: 186 HALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTY 226
+S+ Q G C+L+ASK ++P CY +++
Sbjct: 86 KQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSF 126
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 136 PNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQL 195
P+ LE + R+ ++ +V L DTL + Y RF H+ + +
Sbjct: 26 PSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYV 85
Query: 196 LGVCCMLIASKYEEISPPHVED 217
G CC+ +A K EE +P +D
Sbjct: 86 TGACCLFLAGKVEE-TPKKCKD 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,252,923
Number of Sequences: 62578
Number of extensions: 336185
Number of successful extensions: 860
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 50
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)