Query 041510
Match_columns 339
No_of_seqs 209 out of 1637
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 13:14:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g3n_C V-cyclin; cyclin-depend 100.0 2.3E-50 7.7E-55 375.5 23.8 231 102-338 6-241 (257)
2 2f2c_A Cyclin homolog, V-cycli 100.0 7.3E-50 2.5E-54 371.5 24.0 229 104-338 9-241 (254)
3 2cch_B Cyclin A2, cyclin-A; co 100.0 3.9E-49 1.3E-53 367.8 25.6 217 113-338 3-221 (260)
4 2b9r_A Human cyclin B1; cell c 100.0 2.5E-49 8.4E-54 371.0 18.4 217 111-338 1-218 (269)
5 3g33_B CCND3 protein; Ser/Thr 100.0 1E-48 3.5E-53 373.2 22.8 228 106-338 29-260 (306)
6 1f5q_B Gamma herpesvirus cycli 100.0 5.4E-49 1.8E-53 365.5 14.1 224 101-338 8-235 (252)
7 1w98_B Cyclin E, G1/S-specific 100.0 6.5E-47 2.2E-51 357.1 26.6 220 107-338 8-235 (283)
8 2w96_A G1/S-specific cyclin-D1 100.0 2.9E-46 9.9E-51 350.3 22.5 231 103-338 13-250 (271)
9 2i53_A Cyclin K; cell cycle, t 100.0 6.6E-36 2.2E-40 277.5 13.3 201 136-338 26-244 (258)
10 2ivx_A Cyclin-T2; transcriptio 100.0 8.6E-35 2.9E-39 270.1 16.6 189 142-338 22-233 (257)
11 3rgf_B Cyclin-C; protein kinas 100.0 1.7E-33 5.9E-38 265.6 18.4 182 148-338 40-235 (285)
12 1zp2_A RNA polymerase II holoe 100.0 3.1E-33 1.1E-37 256.6 15.1 179 151-338 28-213 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 1.3E-33 4.6E-38 274.2 9.4 189 142-338 29-240 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 2.2E-31 7.5E-36 255.4 20.1 189 148-337 54-253 (323)
15 1c9b_A General transcription f 99.9 7.1E-26 2.4E-30 203.5 20.9 179 150-338 4-182 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 1.1E-21 3.9E-26 175.0 20.9 179 150-338 8-188 (200)
17 3k7a_M Transcription initiatio 99.7 4.8E-18 1.6E-22 164.1 7.7 178 151-338 126-315 (345)
18 4bbr_M Transcription initiatio 99.3 7.9E-12 2.7E-16 120.5 9.5 176 152-337 127-314 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.4 2E-06 6.7E-11 80.4 11.4 108 153-263 76-186 (293)
20 1ais_B TFB TFIIB, protein (tra 96.9 0.0062 2.1E-07 53.2 10.2 90 155-247 109-198 (200)
21 1c9b_A General transcription f 95.2 0.078 2.7E-06 46.4 8.9 86 155-243 103-188 (207)
22 2ivx_A Cyclin-T2; transcriptio 90.9 1.4 4.7E-05 39.6 10.2 87 156-242 148-238 (257)
23 1zp2_A RNA polymerase II holoe 88.8 0.54 1.8E-05 41.8 5.5 84 156-243 136-219 (235)
24 2i53_A Cyclin K; cell cycle, t 88.4 1.8 6E-05 38.8 8.7 88 156-243 153-250 (258)
25 3rgf_B Cyclin-C; protein kinas 87.5 1.4 4.8E-05 40.4 7.6 82 156-242 159-240 (285)
26 2pk2_A Cyclin-T1, protein TAT; 87.3 1.5 5.2E-05 41.7 8.0 88 156-243 155-246 (358)
27 2f2c_A Cyclin homolog, V-cycli 84.1 3.8 0.00013 36.7 8.6 85 156-242 154-246 (254)
28 1g3n_C V-cyclin; cyclin-depend 83.0 4.7 0.00016 36.1 8.7 86 155-242 152-246 (257)
29 2cch_B Cyclin A2, cyclin-A; co 82.6 3.2 0.00011 37.3 7.5 85 155-242 140-226 (260)
30 3k7a_M Transcription initiatio 80.7 0.32 1.1E-05 46.1 0.0 55 156-210 237-291 (345)
31 2b9r_A Human cyclin B1; cell c 80.0 2.4 8.2E-05 38.4 5.7 82 156-240 140-221 (269)
32 3g33_B CCND3 protein; Ser/Thr 75.1 9.8 0.00034 35.1 8.4 88 157-246 174-269 (306)
33 4bbr_M Transcription initiatio 74.8 13 0.00045 35.0 9.4 65 272-338 145-209 (345)
34 1jkw_A Cyclin H; cell cycle, c 74.6 12 0.00041 34.8 9.0 91 154-244 167-261 (323)
35 2w96_A G1/S-specific cyclin-D1 73.1 8.6 0.00029 34.6 7.4 90 155-246 158-259 (271)
36 3h4c_A Transcription factor TF 70.0 27 0.00094 30.7 9.3 88 153-244 14-104 (260)
37 2pmi_B PHO85 cyclin PHO80, ami 50.7 1.1E+02 0.0036 28.2 10.2 80 249-334 75-157 (293)
38 1w98_B Cyclin E, G1/S-specific 42.9 63 0.0021 29.1 7.4 60 276-336 73-135 (283)
39 1f5q_B Gamma herpesvirus cycli 36.6 1.1E+02 0.0038 27.1 8.0 58 276-334 72-131 (252)
40 2qdj_A Retinoblastoma-associat 34.0 96 0.0033 28.6 7.1 66 158-223 6-74 (304)
41 3o0g_D Cyclin-dependent kinase 33.5 28 0.00097 28.4 3.0 86 152-242 28-124 (149)
42 2p1m_A SKP1-like protein 1A; F 30.5 52 0.0018 27.1 4.4 38 194-232 112-149 (160)
43 3m03_A ORC6, origin recognitio 29.2 1.9E+02 0.0064 22.0 8.4 79 158-241 6-90 (95)
44 2wh0_Q Pkcev3, protein kinase 27.2 46 0.0016 19.4 2.3 18 228-245 12-29 (31)
45 1unl_D Cyclin-dependent kinase 26.2 1E+02 0.0036 26.2 5.3 107 152-263 73-192 (208)
46 3m03_A ORC6, origin recognitio 26.0 1.1E+02 0.0037 23.3 5.0 42 293-336 43-84 (95)
47 1q1s_A Large T antigen; import 24.2 27 0.00091 20.2 0.9 11 34-44 13-23 (26)
No 1
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.3e-50 Score=375.51 Aligned_cols=231 Identities=19% Similarity=0.272 Sum_probs=203.5
Q ss_pred CcccCCCCcccc-ccHHHHHHHHHHhHhhccCCCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 041510 102 KSNESLSALRNC-AYSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVD 180 (339)
Q Consensus 102 ~~~~~~~d~q~~-eY~~dI~~~l~~~E~e~~~~p~~~yl~~~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llD 180 (339)
.++...+||++| + +||| +|+++|. ++.|.++|+...|+++++.||.++||||++|+.+|+++++|+|+||+|||
T Consensus 6 ~~~~~~~dp~~~~~--~~i~-~l~~~E~--~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~D 80 (257)
T 1g3n_C 6 NPPSGLLDPTLCED--RIFY-NILEIEP--RFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLD 80 (257)
T ss_dssp ----------CHHH--HHHH-HHHHHGG--GGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCccCCCCCccccH--HHHH-HHHHHHH--HhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 355677899999 8 9999 9988775 57888999977799999999999999999999999999999999999999
Q ss_pred HHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHH
Q 041510 181 RFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEMEEKVLEFLNFEMGSPTTKSFLRIFTR 260 (339)
Q Consensus 181 RfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~ 260 (339)
||++...+.+.++||+|+||||||||+||..||++.+|++++++.|++++|.+||+.||++|+|+++.|||++|+++|+.
T Consensus 81 Rfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~ 160 (257)
T 1g3n_C 81 RLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLL 160 (257)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhcCCCchhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCC----CCCChHHHHHHhCCCHHhHHHHH
Q 041510 261 VTEENCKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPK----IHPWSWELQTFSGYRPSDLKECH 336 (339)
Q Consensus 261 ~~~~~~~~~~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~----~~~W~~~L~~~tgy~~~dL~~C~ 336 (339)
.+..+... ...+..++.++++++++|+.|++|+||.||+|||++|+..++.. .+.|...|.++|||++++|.+|+
T Consensus 161 ~~~~~~~~-~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~ 239 (257)
T 1g3n_C 161 KLVGGSQH-LDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAV 239 (257)
T ss_dssp HHSCSSTT-HHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCChhH-HHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHH
Confidence 87654332 22456789999999999999999999999999999999998732 25799999999999999999998
Q ss_pred Hh
Q 041510 337 KV 338 (339)
Q Consensus 337 ~~ 338 (339)
+.
T Consensus 240 ~~ 241 (257)
T 1g3n_C 240 EQ 241 (257)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 2
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=7.3e-50 Score=371.47 Aligned_cols=229 Identities=18% Similarity=0.291 Sum_probs=205.4
Q ss_pred ccCCCCcccc-ccHHHHHHHHHHhHhhccCCCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Q 041510 104 NESLSALRNC-AYSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRF 182 (339)
Q Consensus 104 ~~~~~d~q~~-eY~~dI~~~l~~~E~e~~~~p~~~yl~~~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRf 182 (339)
+...+||++| + +|||. |+++|. ++.|.++|+...|+++++.||.++||||++|+.+|+++++|+|+||+|+|||
T Consensus 9 ~~~~~dp~l~~~--~~i~~-l~~~E~--~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRf 83 (254)
T 2f2c_A 9 NRAKIDSTTMKD--PRVLN-NLKLRE--LLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRY 83 (254)
T ss_dssp CBCCCCHHHHTC--HHHHH-HHHHHH--TTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred CCCCCCcccccH--HHHHH-HHHHHH--hhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 3667799999 8 99999 988875 6788899998779999999999999999999999999999999999999999
Q ss_pred hhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHh
Q 041510 183 LSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEMEEKVLEFLNFEMGSPTTKSFLRIFTRVT 262 (339)
Q Consensus 183 Ls~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~ 262 (339)
++...+.+.++||+|+||||||||+||..||++.+|++++++.|++++|.+||+.||++|+|+++.|||++|+++|+..+
T Consensus 84 ls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~ 163 (254)
T 2f2c_A 84 LCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNAL 163 (254)
T ss_dssp TTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHT
T ss_pred HccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhcCCCchhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHhCCCHHhHHHHHHh
Q 041510 263 EENCKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPW---SWELQTFSGYRPSDLKECHKV 338 (339)
Q Consensus 263 ~~~~~~~~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W---~~~L~~~tgy~~~dL~~C~~~ 338 (339)
..+... ...+...+.++++++++|+.|++|+||.||+|||++|+...+....+| ...|+++|||++++|++|++.
T Consensus 164 ~~~~~~-~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~ 241 (254)
T 2f2c_A 164 KIPEDL-WPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQ 241 (254)
T ss_dssp TCCGGG-HHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCChhh-HHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 643321 223566899999999999999999999999999999999863322246 889999999999999999974
No 3
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=3.9e-49 Score=367.77 Aligned_cols=217 Identities=44% Similarity=0.725 Sum_probs=204.4
Q ss_pred c-ccHHHHHHHHHHhHhhccCCCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccc
Q 041510 113 C-AYSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRN 191 (339)
Q Consensus 113 ~-eY~~dI~~~l~~~E~e~~~~p~~~yl~~~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~ 191 (339)
| ||++|||.||+++|. +++|.++|+.. |+++++.||.++||||++++..|+++++|+++||+|+|||++...+.+.
T Consensus 3 ~~eY~~di~~~l~~~E~--~~~p~~~y~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~ 79 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRG 79 (260)
T ss_dssp CCTTHHHHHHHHHHHHH--HTCCCTTGGGG-CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_pred hHhHHHHHHHHHHHHHh--hcCCCchhhhc-CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHH
Confidence 5 999999999998886 57788999986 9999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHhhhcCCCchh
Q 041510 192 KLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEMEEKVLEFLNFEMGSPTTKSFLRIFTRVTEENCKKPDL 271 (339)
Q Consensus 192 ~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~~~~~~ 271 (339)
++||+|+||||||||+||..+|++.+|++++++.|++++|.+||+.||+.|+|+++.|||++|+.+|+..++.+ ..
T Consensus 80 ~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~----~~ 155 (260)
T 2cch_B 80 KLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA----NC 155 (260)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSC----CH
T ss_pred HHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCC----hH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877532 23
Q ss_pred HHHHHHHHHHHHhhhhhc-ccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhCCCHHhHHHHHHh
Q 041510 272 LYEFLSCYLAELSLLDYG-CLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKECHKV 338 (339)
Q Consensus 272 ~i~~la~~l~elsL~d~~-~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~dL~~C~~~ 338 (339)
++..+++++++++++|+. |++|+||.||+|||++|+.+++. +.|...|+++|||++++|++|++.
T Consensus 156 ~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~--~~w~~~l~~~~g~~~~~i~~~~~~ 221 (260)
T 2cch_B 156 KVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG--QSWPESLIRKTGYTLESLKPCLMD 221 (260)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS--CCSCHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC--CcchHHHHHHhCcCHHHHHHHHHH
Confidence 567899999999999999 99999999999999999999863 789999999999999999999974
No 4
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=2.5e-49 Score=371.00 Aligned_cols=217 Identities=39% Similarity=0.676 Sum_probs=199.5
Q ss_pred ccc-ccHHHHHHHHHHhHhhccCCCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCc
Q 041510 111 RNC-AYSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALS 189 (339)
Q Consensus 111 q~~-eY~~dI~~~l~~~E~e~~~~p~~~yl~~~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~ 189 (339)
|+| ||++|||.||+.+|. .+.|.++|+.. | ++++.||.++++||++++..|+++++|+++||+|+|||++...+.
T Consensus 1 ~~~~eY~~di~~~l~~~E~--~~~~~~~y~~~-q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~ 76 (269)
T 2b9r_A 1 NLSSEYVKDIYAYLRQLEA--AQAVRPKYLLG-R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVP 76 (269)
T ss_dssp ------CCTTTTTHHHHHH--TTCCCTTTTSS-S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CChHHHHHHHHHHHHHHHH--hhCCCcccccC-C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCc
Confidence 678 999999999999886 56778899975 6 999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHhhhcCCCc
Q 041510 190 RNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEMEEKVLEFLNFEMGSPTTKSFLRIFTRVTEENCKKP 269 (339)
Q Consensus 190 ~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~~~~ 269 (339)
+.++||+|+||||||||+||..+|++.+|++++++.|++++|.+||+.||+.|+|+++.|||++|+.+|+...+.
T Consensus 77 ~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~----- 151 (269)
T 2b9r_A 77 KKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEV----- 151 (269)
T ss_dssp GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCC-----
T ss_pred HHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886542
Q ss_pred hhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhCCCHHhHHHHHHh
Q 041510 270 DLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKECHKV 338 (339)
Q Consensus 270 ~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~dL~~C~~~ 338 (339)
+..+..++.+++++++.++.|++|+||.||+|||++|+.+++. ..|...|+++|||++++|++|+..
T Consensus 152 ~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~--~~w~~~l~~~tg~~~~~l~~~~~~ 218 (269)
T 2b9r_A 152 DVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDN--GEWTPTLQHYLSYTEESLLPVMQH 218 (269)
T ss_dssp CHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTC--CCSCTTHHHHSCCCSSTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCC--CCCCHHHHHHHCCCHHHHHHHHHH
Confidence 2356778999999999999999999999999999999999964 489999999999999999999864
No 5
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1e-48 Score=373.24 Aligned_cols=228 Identities=26% Similarity=0.384 Sum_probs=201.7
Q ss_pred CCCCccccccHHHHHHHHHHhHhhccCCCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhc
Q 041510 106 SLSALRNCAYSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSS 185 (339)
Q Consensus 106 ~~~d~q~~eY~~dI~~~l~~~E~e~~~~p~~~yl~~~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~ 185 (339)
-..||+++ |.+|||.+|+.+|. +++|.++|+..+|++|++.||.++|+||++|+.+|+++++|+|+||+|||||+++
T Consensus 29 a~~dp~l~-~~~~i~~~l~~~E~--~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~ 105 (306)
T 3g33_B 29 AGPDPRLL-GDQRVLQSLLRLEE--RYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSC 105 (306)
T ss_dssp ---------CHHHHHHHHHHHGG--GGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred cCCCCccc-chHHHHHHHHHHHH--HhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhc
Confidence 45588888 99999999988875 5788899998889999999999999999999999999999999999999999999
Q ss_pred CcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHhhhc
Q 041510 186 HALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEMEEKVLEFLNFEMGSPTTKSFLRIFTRVTEEN 265 (339)
Q Consensus 186 ~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~ 265 (339)
..+.+.++||+|+||||||||+||..+|++.+|++++++.|++++|++||+.||++|+|+++.|||++||.+|+..+...
T Consensus 106 ~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~ 185 (306)
T 3g33_B 106 VPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLP 185 (306)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCC
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887544
Q ss_pred CCCchhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCC----ChHHHHHHhCCCHHhHHHHHHh
Q 041510 266 CKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHP----WSWELQTFSGYRPSDLKECHKV 338 (339)
Q Consensus 266 ~~~~~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~----W~~~L~~~tgy~~~dL~~C~~~ 338 (339)
... ...+...+.++++++++++.|+.|+||+||+|||++|+..++. .+. |...|.++|||+.++|++|++.
T Consensus 186 ~~~-~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~-~~~w~~~w~~~L~~~tg~~~~~l~~c~~~ 260 (306)
T 3g33_B 186 RDR-QALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGA-CSMSGDELTELLAGITGTEVDCLRACQEQ 260 (306)
T ss_dssp TTT-HHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC----CCHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhH-HHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHCCCHHHHHHHHHH
Confidence 322 2235567899999999999999999999999999999999974 334 5688999999999999999874
No 6
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=5.4e-49 Score=365.53 Aligned_cols=224 Identities=16% Similarity=0.211 Sum_probs=196.7
Q ss_pred CCcccCCCCccccccHHHHHHHHHHhHhhccCCCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 041510 101 RKSNESLSALRNCAYSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVD 180 (339)
Q Consensus 101 ~~~~~~~~d~q~~eY~~dI~~~l~~~E~e~~~~p~~~yl~~~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llD 180 (339)
..++....||++| .++||.+|+++|.. +.| ...|+++++.||.++||||++|+.+|+++++|+|+||+|+|
T Consensus 8 ~~~~~~~~dp~l~--~d~i~~~l~~~E~~--~~p-----~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lD 78 (252)
T 1f5q_B 8 GFLDSSLLNEEDC--RQMIYRSEREHDAR--MVG-----VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLD 78 (252)
T ss_dssp SSCSCTTCCHHHH--HHHHHHHHHHHHHH--HSS-----SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CCCCcCcCCHHHh--HHHHHHHHHHHHHH--hCc-----CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 4455677799999 45999999988864 455 23588899999999999999999999999999999999999
Q ss_pred HHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHH
Q 041510 181 RFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEMEEKVLEFLNFEMGSPTTKSFLRIFTR 260 (339)
Q Consensus 181 RfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~ 260 (339)
|||+...+.+.++||+|+||||||||+||..||.+.+|++++++.|++++|++||+.||++|+|+++.|||++|+++|+.
T Consensus 79 RfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~ 158 (252)
T 1f5q_B 79 ELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILH 158 (252)
T ss_dssp HHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhcCCCchhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHhCCCHHhHHHHH
Q 041510 261 VTEENCKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPW----SWELQTFSGYRPSDLKECH 336 (339)
Q Consensus 261 ~~~~~~~~~~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W----~~~L~~~tgy~~~dL~~C~ 336 (339)
.+..+.+. ...+...+.++++++++|+.|+.|+||+||+||+.++. +. ..+| .+.|+++|||+.++|.+|+
T Consensus 159 ~~~~~~~~-~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l---~~-~~~~~~~~~~~L~~~t~~~~~~l~~C~ 233 (252)
T 1f5q_B 159 IMHAPRED-YLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM---NQ-KYDYYENRIDGVCKSLYITKEELHQCC 233 (252)
T ss_dssp HTTCCHHH-HHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH---TT-TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HcCCCcch-HHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh---cc-CCCchhhHHHHHHHHHCcCHHHHHHHH
Confidence 86532211 12456689999999999999999999999999965443 32 3344 6789999999999999998
Q ss_pred Hh
Q 041510 337 KV 338 (339)
Q Consensus 337 ~~ 338 (339)
+.
T Consensus 234 ~~ 235 (252)
T 1f5q_B 234 DL 235 (252)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 7
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=6.5e-47 Score=357.11 Aligned_cols=220 Identities=29% Similarity=0.464 Sum_probs=199.8
Q ss_pred CCCcccc-ccHHHHHHHHHHhHhhccCCCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhc
Q 041510 107 LSALRNC-AYSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSS 185 (339)
Q Consensus 107 ~~d~q~~-eY~~dI~~~l~~~E~e~~~~p~~~yl~~~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~ 185 (339)
..+|++| +|.+|||.+|+.+|. ++.|.++|+.. |+++++.||.++|+||++++.++++.++|+++||+|||||++.
T Consensus 8 ~~~p~l~~~y~~~i~~~l~~~E~--~~~~~~~y~~~-q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~ 84 (283)
T 1w98_B 8 SPLPVLSWANREEVWKIMLNKEK--TYLRDQHFLEQ-HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMAT 84 (283)
T ss_dssp CCSCCCSSSCHHHHHHHHHHHTT--TSCCCTTGGGG-CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhcCHHHHHHHHHHHHH--HhCCCchhhcc-CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHh
Confidence 4589999 999999999998885 57788999975 9999999999999999999999999999999999999999998
Q ss_pred -CcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHhhh
Q 041510 186 -HALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEMEEKVLEFLNFEMGSPTTKSFLRIFTRVTEE 264 (339)
Q Consensus 186 -~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~ 264 (339)
..+.+.++||+|+||||||||+||..+|++.+|++++++.|++++|.+||+.||++|+|+++.|||++|+.+|+.....
T Consensus 85 ~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~ 164 (283)
T 1w98_B 85 QENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYL 164 (283)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999987753
Q ss_pred cCCC------chhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhCCCHHhHHHHHHh
Q 041510 265 NCKK------PDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKECHKV 338 (339)
Q Consensus 265 ~~~~------~~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~dL~~C~~~ 338 (339)
+... ........+.++++++++|+.|++|+||.||+|||++|+ |.+.+..+|||++++|++|++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~---------~~~~l~~~tg~~~~~i~~c~~~ 235 (283)
T 1w98_B 165 NDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS---------SSELMQKVSGYQWCDIENCVKW 235 (283)
T ss_dssp CSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS---------CHHHHHHHSCCCHHHHHHHHHH
T ss_pred CchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH---------ChHHHHHHhCCCHHHHHHHHHH
Confidence 3221 112223357789999999999999999999999999984 6888999999999999999874
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=2.9e-46 Score=350.34 Aligned_cols=231 Identities=26% Similarity=0.400 Sum_probs=198.2
Q ss_pred cccCCCCccccccHHHHHHHHHHhHhhccCCCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Q 041510 103 SNESLSALRNCAYSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRF 182 (339)
Q Consensus 103 ~~~~~~d~q~~eY~~dI~~~l~~~E~e~~~~p~~~yl~~~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRf 182 (339)
+.....||+++ .+|||.+|+++|. ++.|.++|+...|+++++.||.++|+||++++.+|+++.+|+++||+|||||
T Consensus 13 ~~~~~~dp~~~--~~~i~~~l~~~E~--~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRf 88 (271)
T 2w96_A 13 IRRAYPDANLL--NDRVLRAMLKAEE--TCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRF 88 (271)
T ss_dssp C-------------CHHHHHHHHHHH--HTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred cccCCCCCccc--HHHHHHHHHHHHH--HhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHh
Confidence 34566789888 7799999988875 6788999998889999999999999999999999999999999999999999
Q ss_pred hhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHh
Q 041510 183 LSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEMEEKVLEFLNFEMGSPTTKSFLRIFTRVT 262 (339)
Q Consensus 183 Ls~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~ 262 (339)
++..++.+.++||+|+||||||||+||+.||++++|++++++.|++++|.+||+.||++|+|+++.|||++|+.+|+..+
T Consensus 89 ls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l 168 (271)
T 2w96_A 89 LSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKM 168 (271)
T ss_dssp HTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTS
T ss_pred CCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhcCCCchhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhC---CCCCC----ChHHHHHHhCCCHHhHHHH
Q 041510 263 EENCKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQ---PKIHP----WSWELQTFSGYRPSDLKEC 335 (339)
Q Consensus 263 ~~~~~~~~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~---~~~~~----W~~~L~~~tgy~~~dL~~C 335 (339)
..+... ...+...+.+++++++.|+.|+.|+||.||+|||++|+..++ ++.+. |...|.+++||++++|++|
T Consensus 169 ~~~~~~-~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c 247 (271)
T 2w96_A 169 PEAEEN-KQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRAC 247 (271)
T ss_dssp CCCHHH-HHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHH
T ss_pred CCCchH-HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHH
Confidence 532211 112345688999999999999999999999999999999875 22333 4568999999999999999
Q ss_pred HHh
Q 041510 336 HKV 338 (339)
Q Consensus 336 ~~~ 338 (339)
++.
T Consensus 248 ~~~ 250 (271)
T 2w96_A 248 QEQ 250 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=6.6e-36 Score=277.47 Aligned_cols=201 Identities=20% Similarity=0.322 Sum_probs=171.5
Q ss_pred CchhhhcCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCCh
Q 041510 136 PNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHV 215 (339)
Q Consensus 136 ~~yl~~~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l 215 (339)
|.+...+++++...||..+++||.+++..|+++.+|+++|++|||||++..++.+.++|++|+||||||||+||. ++++
T Consensus 26 ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~-~~~l 104 (258)
T 2i53_A 26 PSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEET-PKKC 104 (258)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCH
T ss_pred chhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccc-cccH
Confidence 455556677788899999999999999999999999999999999999999999999999999999999999995 8899
Q ss_pred hhhhhhh-----cCCC------CHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHh
Q 041510 216 EDFCYIT-----DNTY------MKEEVVEMEEKVLEFLNFEMGSPTTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELS 284 (339)
Q Consensus 216 ~dl~~i~-----~~~~------t~~ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~~~~~~~i~~la~~l~els 284 (339)
.+++..+ ++.| ++++|++||+.||+.|+|+++.|||++|+.+|+..+..+.. ....+...|.++++.+
T Consensus 105 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~-~~~~~~~~A~~l~~~s 183 (258)
T 2i53_A 105 KDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKN-KIQKLVQMAWTFVNDS 183 (258)
T ss_dssp HHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHH
Confidence 9998644 3444 48999999999999999999999999999999987654321 1125677899999999
Q ss_pred hhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChHH------HH-HHhCCCHHhHHHHHHh
Q 041510 285 LLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWE------LQ-TFSGYRPSDLKECHKV 338 (339)
Q Consensus 285 L~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~------L~-~~tgy~~~dL~~C~~~ 338 (339)
+.++.++.|+||.||+|||++|..+++.+.+.|... .. .++||+.++|.+|+..
T Consensus 184 ~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~ 244 (258)
T 2i53_A 184 LCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQ 244 (258)
T ss_dssp TTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHH
T ss_pred HcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHH
Confidence 999999999999999999999999987543444321 12 2479999999999863
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=8.6e-35 Score=270.10 Aligned_cols=189 Identities=20% Similarity=0.262 Sum_probs=164.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhh
Q 041510 142 VQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYI 221 (339)
Q Consensus 142 ~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i 221 (339)
++.+....||..+++||.+++..|+|+.+|+++|++|||||++.+++.+.++|++|+||||||||+||. ++++.+++.+
T Consensus 22 ~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~ 100 (257)
T 2ivx_A 22 VEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKV 100 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHH
Confidence 344445689999999999999999999999999999999999999999999999999999999999999 8999999765
Q ss_pred h--------------cCCCC--HHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhh
Q 041510 222 T--------------DNTYM--KEEVVEMEEKVLEFLNFEMGSPTTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSL 285 (339)
Q Consensus 222 ~--------------~~~~t--~~ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~~~~~~~i~~la~~l~elsL 285 (339)
+ ++.|+ +++|++||+.||+.|+|+++.|||++|+.+|+..+..+ ..+..+|+++++.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~-----~~~~~~A~~~~~~sl 175 (257)
T 2ivx_A 101 AHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRAS-----KDLAQTSYFMATNSL 175 (257)
T ss_dssp HHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCC-----HHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCC-----cHHHHHHHHHHHhhh
Confidence 4 44565 89999999999999999999999999999999887532 356678999999998
Q ss_pred h-hhcccCCcHHHHHHHHHHHHHHHhCCC------CCCChHHHHHHhCCCHHhHHHHHHh
Q 041510 286 L-DYGCLWYLPSLVAASSIFLSRFIMQPK------IHPWSWELQTFSGYRPSDLKECHKV 338 (339)
Q Consensus 286 ~-d~~~~~~~PS~iAaAai~lA~~~l~~~------~~~W~~~L~~~tgy~~~dL~~C~~~ 338 (339)
. +.-++.|+||.||+|||++|..+++.. ..+|...+ .+||+.++|.+|+..
T Consensus 176 ~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~ 233 (257)
T 2ivx_A 176 HLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHE 233 (257)
T ss_dssp HHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHH
T ss_pred hcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHH
Confidence 6 444899999999999999999998732 24587654 458999999999864
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=265.59 Aligned_cols=182 Identities=17% Similarity=0.209 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhc----
Q 041510 148 INMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITD---- 223 (339)
Q Consensus 148 ~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~---- 223 (339)
..+|..+++||.+++..|+|+.+|+++|++|||||++.+.+.+.++|+||+||||||||+||+.+|++.+++.++.
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k 119 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLK 119 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHc
Confidence 4799999999999999999999999999999999999999999999999999999999999999889999887652
Q ss_pred ----------CCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhhhhhcccCC
Q 041510 224 ----------NTYMKEEVVEMEEKVLEFLNFEMGSPTTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYGCLWY 293 (339)
Q Consensus 224 ----------~~~t~~ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~~~~~~~i~~la~~l~elsL~d~~~~~~ 293 (339)
..+++++|++||+.||+.|+|++..+||++||.+|+..++. ...+..+|+++++.++.++.++.|
T Consensus 120 ~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~-----~~~~~~~A~~~l~~sl~t~~~l~~ 194 (285)
T 3rgf_B 120 TRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQ-----EDMLLPLAWRIVNDTYRTDLCLLY 194 (285)
T ss_dssp HHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHTTSSHHHHS
T ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHccChhhcc
Confidence 24789999999999999999999999999999999988763 346778999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhCCCHHhHHHHHHh
Q 041510 294 LPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKECHKV 338 (339)
Q Consensus 294 ~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~dL~~C~~~ 338 (339)
+||.||+|||++|..+++.+..+|... .|++.++|.+|+..
T Consensus 195 ~Ps~IAaAaiylA~~~~~~~~~~W~~~----~~~~~~~l~~~~~~ 235 (285)
T 3rgf_B 195 PPFMIALACLHVACVVQQKDARQWFAE----LSVDMEKILEIIRV 235 (285)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHT----SCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCChhhHHHH----HCCCHHHHHHHHHH
Confidence 999999999999999998655667654 49999999999864
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-33 Score=256.57 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCcc-chhHHHHHHHHHHhhhhccCCCCChhhhhhhhcC-----
Q 041510 151 RQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSR-NKLQLLGVCCMLIASKYEEISPPHVEDFCYITDN----- 224 (339)
Q Consensus 151 R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~-~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~----- 224 (339)
|...++||.+++..|+|+.+|+++|++|||||++...+.+ .++|+||+||||||||+||. ++.+.+++.++++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~~~~ 106 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC-PVHIRTICNEANDLWSLK 106 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccC-cccHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999 99999999999999999995 7889999998875
Q ss_pred -CCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHH
Q 041510 225 -TYMKEEVVEMEEKVLEFLNFEMGSPTTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSI 303 (339)
Q Consensus 225 -~~t~~ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~~~~~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai 303 (339)
.+++++|.+||+.||+.|+|++..|||+.||.+|+...+. ...+...|.++++.++.++.++.|+||.||+|||
T Consensus 107 ~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~-----~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai 181 (235)
T 1zp2_A 107 VKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGII-----NQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAAL 181 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSS-----CHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHH
Confidence 6899999999999999999999999999999999986422 2356678999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCChHHHHHHhCCCHHhHHHHHHh
Q 041510 304 FLSRFIMQPKIHPWSWELQTFSGYRPSDLKECHKV 338 (339)
Q Consensus 304 ~lA~~~l~~~~~~W~~~L~~~tgy~~~dL~~C~~~ 338 (339)
++|..+++...+.|...++ |++.++|.+|+..
T Consensus 182 ~lA~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~ 213 (235)
T 1zp2_A 182 LISCCNDENTIPKLLDLIK---STDAFKVILCVQR 213 (235)
T ss_dssp HHHHTSCTTHHHHHHHHCC---HHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCcchhh---cCCHHHHHHHHHH
Confidence 9999987533233555553 9999999999864
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=1.3e-33 Score=274.22 Aligned_cols=189 Identities=20% Similarity=0.244 Sum_probs=164.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhh
Q 041510 142 VQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYI 221 (339)
Q Consensus 142 ~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i 221 (339)
++.+....||..+++||.+++..|+|+.+|+++|++|||||++.+.+.+.++|+||+||||||||+||+ ++.+.+|+.+
T Consensus 29 i~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v 107 (358)
T 2pk2_A 29 VDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKV 107 (358)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC-CCCHHHHHHH
Confidence 344455689999999999999999999999999999999999999999999999999999999999999 8899999865
Q ss_pred h--------------cCCCC--HHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhh
Q 041510 222 T--------------DNTYM--KEEVVEMEEKVLEFLNFEMGSPTTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSL 285 (339)
Q Consensus 222 ~--------------~~~~t--~~ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~~~~~~~i~~la~~l~elsL 285 (339)
+ ++.|+ +++|++||+.||+.|+|++..|||++||.+|+..+.. ...+..+|+++++.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~-----~~~l~~~A~~ll~~sl 182 (358)
T 2pk2_A 108 AHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRA-----SKDLAQTSYFMATNSL 182 (358)
T ss_dssp HHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTC-----CHHHHHHHHHHHHHHT
T ss_pred HHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHH
Confidence 4 34554 8999999999999999999999999999999987753 2356778999999999
Q ss_pred hhhc-ccCCcHHHHHHHHHHHHHHHhCCC------CCCChHHHHHHhCCCHHhHHHHHHh
Q 041510 286 LDYG-CLWYLPSLVAASSIFLSRFIMQPK------IHPWSWELQTFSGYRPSDLKECHKV 338 (339)
Q Consensus 286 ~d~~-~~~~~PS~iAaAai~lA~~~l~~~------~~~W~~~L~~~tgy~~~dL~~C~~~ 338 (339)
+++. ++.|+||.||+|||++|..+++.. ..+|...+ .++|+.++|.+|+..
T Consensus 183 ~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 183 HLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHE 240 (358)
T ss_dssp TTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHH
T ss_pred hcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHH
Confidence 6444 799999999999999999998632 24587654 358999999999864
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.97 E-value=2.2e-31 Score=255.40 Aligned_cols=189 Identities=16% Similarity=0.154 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcC-
Q 041510 148 INMRQTLVDWLVEVLEEYK--LVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDN- 224 (339)
Q Consensus 148 ~~~R~~lVdWl~ev~~~l~--L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~- 224 (339)
..+|...++||.++|..|+ |+.+|+++|++|||||++.+++.+.++|+||+||||||||+||+ ++++.+|++.+.+
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccC
Confidence 4689999999999999999 99999999999999999999999999999999999999999998 6789999986643
Q ss_pred ----CCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHhhhcC--CCchhHHHHHHHHHHHHhhhhhcccCCcHHHH
Q 041510 225 ----TYMKEEVVEMEEKVLEFLNFEMGSPTTKSFLRIFTRVTEENC--KKPDLLYEFLSCYLAELSLLDYGCLWYLPSLV 298 (339)
Q Consensus 225 ----~~t~~ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~--~~~~~~i~~la~~l~elsL~d~~~~~~~PS~i 298 (339)
.|++++|++||+.||+.|+|++..+||+.||..|+..++... ......+...|+++++.++.++.++.|+||.|
T Consensus 133 p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~I 212 (323)
T 1jkw_A 133 PLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQI 212 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHH
Confidence 367899999999999999999999999999999987664321 11223567789999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHH--hCCCHHhHHHHHH
Q 041510 299 AASSIFLSRFIMQPKIHPWSWELQTF--SGYRPSDLKECHK 337 (339)
Q Consensus 299 AaAai~lA~~~l~~~~~~W~~~L~~~--tgy~~~dL~~C~~ 337 (339)
|+|||++|...++.+.+.|...+..+ ++++.++|.+|+.
T Consensus 213 AaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~ 253 (323)
T 1jkw_A 213 ALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMK 253 (323)
T ss_dssp HHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHH
Confidence 99999999999987778899988775 8899999998875
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.94 E-value=7.1e-26 Score=203.55 Aligned_cols=179 Identities=14% Similarity=0.158 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHH
Q 041510 150 MRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKE 229 (339)
Q Consensus 150 ~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ 229 (339)
......+||.+++..|+|+..|+..|+.|++||+..+.+...+.+++++||||||||+||. |+++.|++.+++ ++..
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~~~~ 80 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISKK 80 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--SCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--CCHH
Confidence 3557789999999999999999999999999999999999999999999999999999998 889999999887 8999
Q ss_pred HHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHH
Q 041510 230 EVVEMEEKVLEFLNFEMGSPTTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFI 309 (339)
Q Consensus 230 ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~~~~~~~~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~ 309 (339)
+|.++|+.|++.|+|++..++|+.|+.+|...++-+ ..+...|+++++.++.+.-+.+++|+.||+||||+|..+
T Consensus 81 ~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~-----~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~ 155 (207)
T 1c9b_A 81 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLP-----KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQA 155 (207)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCC-----HHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999877532 356678999999999888888999999999999999998
Q ss_pred hCCCCCCChHHHHHHhCCCHHhHHHHHHh
Q 041510 310 MQPKIHPWSWELQTFSGYRPSDLKECHKV 338 (339)
Q Consensus 310 l~~~~~~W~~~L~~~tgy~~~dL~~C~~~ 338 (339)
.+ .+.|...+..++|+++.+|++|+..
T Consensus 156 ~~--~~~~~~~i~~~~~v~~~tI~~~~~~ 182 (207)
T 1c9b_A 156 SA--EKRTQKEIGDIAGVADVTIRQSYRL 182 (207)
T ss_dssp SS--SCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HC--CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 85 5678889999999999999999864
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.89 E-value=1.1e-21 Score=175.02 Aligned_cols=179 Identities=9% Similarity=0.039 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHH
Q 041510 150 MRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKE 229 (339)
Q Consensus 150 ~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ 229 (339)
......++|.+++..++|+..+...|..|++||+....+...+.+.++++|+++|||.|+ .|.++.|++.+++ ++..
T Consensus 8 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~--v~~~ 84 (200)
T 1ais_B 8 NLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK-VPRTLDEIADIAR--VDKK 84 (200)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTT--SCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHC--CCHH
Confidence 345889999999999999999999999999999999999989999999999999999999 5889999998876 8999
Q ss_pred HHHHHHHHHHHHcCCcccC--CCHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHH
Q 041510 230 EVVEMEEKVLEFLNFEMGS--PTTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSR 307 (339)
Q Consensus 230 ei~~mE~~IL~~L~f~l~~--pTp~~FL~~fl~~~~~~~~~~~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~ 307 (339)
+|.++++.|++.|+|++.. ++|..|+.+|...++-+ ..+...|+++++.+..+.-+.+++|+.||+||||+|.
T Consensus 85 ~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~-----~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~ 159 (200)
T 1ais_B 85 EIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLS-----EKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIAS 159 (200)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCC-----HHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999887532 3466789999999999888899999999999999999
Q ss_pred HHhCCCCCCChHHHHHHhCCCHHhHHHHHHh
Q 041510 308 FIMQPKIHPWSWELQTFSGYRPSDLKECHKV 338 (339)
Q Consensus 308 ~~l~~~~~~W~~~L~~~tgy~~~dL~~C~~~ 338 (339)
+..+ .+.|...+..++|+++.+|..|++.
T Consensus 160 ~~~~--~~~t~~ei~~~~~vs~~ti~~~~~~ 188 (200)
T 1ais_B 160 LLEG--EKRTQREVAEVARVTEVTVRNRYKE 188 (200)
T ss_dssp HHTT--CCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHhC--CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 9985 5679999999999999999999874
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.8e-18 Score=164.09 Aligned_cols=178 Identities=12% Similarity=0.055 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHH
Q 041510 151 RQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEE 230 (339)
Q Consensus 151 R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~e 230 (339)
-......|..++..++|+..+.-.|..||.+++....+...+.+.++++|||||||.|+. |.++.+++.+++ ++..+
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~ke 202 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKE 202 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCSHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHH
Confidence 346789999999999999999999999999999999999999999999999999999887 889999998876 88999
Q ss_pred HHHHHHHHHHHcC------------CcccCCCHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhhhhhcccCCcHHHH
Q 041510 231 VVEMEEKVLEFLN------------FEMGSPTTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLV 298 (339)
Q Consensus 231 i~~mE~~IL~~L~------------f~l~~pTp~~FL~~fl~~~~~~~~~~~~~i~~la~~l~elsL~d~~~~~~~PS~i 298 (339)
|.++++.|++.|+ +++..++|..|+.+|...+.-+ ..+...|.++++.+..+.-+..++|+.|
T Consensus 203 Igr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~-----~~v~~~A~~i~~~~~~~~l~~Gr~P~~I 277 (345)
T 3k7a_M 203 FGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLP-----MQVTTSAEYTAKKCKEIKEIAGKSPITI 277 (345)
T ss_dssp HHHHHHHHHHHHTCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHHhchhcCCCHHHH
Confidence 9999999999999 9999999999999999877543 2455689999999998888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHhCCCHHhHHHHHHh
Q 041510 299 AASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKECHKV 338 (339)
Q Consensus 299 AaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~dL~~C~~~ 338 (339)
|+||||+|..+++ ...|...+...+|+++..|+.++.-
T Consensus 278 AaAaIylAa~~~~--~~~t~~eIa~~~~Vse~TIr~~yke 315 (345)
T 3k7a_M 278 AVVSIYLNILLFQ--IPITAAKVGQTLQVTEGTIKSGYKI 315 (345)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999885 4568889999999999999988754
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.28 E-value=7.9e-12 Score=120.50 Aligned_cols=176 Identities=11% Similarity=0.033 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHH
Q 041510 152 QTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEV 231 (339)
Q Consensus 152 ~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei 231 (339)
......|.+++..++|+..+.-.|..++.+++....+.......++++|+|||||.++. |-++.+++.+++ .+..+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~-prtl~eI~~~~~--v~~kei 203 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCC-BCCHHHHHHHHT--CCTTHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-CccHHHHHHHhC--CCHHHH
Confidence 35677889999999999999999999999999998888889999999999999999875 778999988776 789999
Q ss_pred HHHHHHHHHHcCCc------------ccCCCHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhhhhhcccCCcHHHHH
Q 041510 232 VEMEEKVLEFLNFE------------MGSPTTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVA 299 (339)
Q Consensus 232 ~~mE~~IL~~L~f~------------l~~pTp~~FL~~fl~~~~~~~~~~~~~i~~la~~l~elsL~d~~~~~~~PS~iA 299 (339)
-+..+.|.+.|+.. +...+|.+|+.+|...+.-+. ++...|..+++.+.-+.-...-+|+.||
T Consensus 204 gr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~-----~v~~~A~~i~~~~~~~~i~~GR~P~~IA 278 (345)
T 4bbr_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-----QVTTSAEYTAKKCKEIKEIAGKSPITIA 278 (345)
T ss_dssp HHHHHHHHHCC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHHHhcccccCCChHHHH
Confidence 99999999999974 677889999999988765432 3455778888877776666789999999
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHhCCCHHhHHHHHH
Q 041510 300 ASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKECHK 337 (339)
Q Consensus 300 aAai~lA~~~l~~~~~~W~~~L~~~tgy~~~dL~~C~~ 337 (339)
+||||+|..+.+. ..-...+...+|.++..|+..+.
T Consensus 279 AAaIylAa~l~g~--~~t~~eIa~v~~Vse~TIr~ryk 314 (345)
T 4bbr_M 279 VVSIYLNILLFQI--PITAAKVGQTLQVTEGTIKSGYK 314 (345)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHhCC--CCCHHHHHHHHCCCHHHHHHHHH
Confidence 9999999988753 22345688888888887776654
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.38 E-value=2e-06 Score=80.42 Aligned_cols=108 Identities=11% Similarity=0.099 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcC---cCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHH
Q 041510 153 TLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSH---ALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKE 229 (339)
Q Consensus 153 ~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~---~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ 229 (339)
.+-+|+..+...-+++.+++-.|..|+||+.... .+......-+-++||.+|+|+-+.....-..+..++ .++.+
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg--Gisl~ 153 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG--GVRCH 153 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--TSCHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc--CcCHH
Confidence 3667899999999999999999999999998753 345667888889999999999888777778887774 48999
Q ss_pred HHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHhh
Q 041510 230 EVVEMEEKVLEFLNFEMGSPTTKSFLRIFTRVTE 263 (339)
Q Consensus 230 ei~~mE~~IL~~L~f~l~~pTp~~FL~~fl~~~~ 263 (339)
|+-.||+..|..|+|++.++ ...|...++...+
T Consensus 154 ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~~ 186 (293)
T 2pmi_B 154 ELNILENDFLKRVNYRIIPR-DHNITLCSIEQKQ 186 (293)
T ss_dssp HHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCCceeeC-HHHHHHHHHHHhh
Confidence 99999999999999998665 5567766665543
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.85 E-value=0.0062 Score=53.21 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=78.0
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHH
Q 041510 155 VDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEM 234 (339)
Q Consensus 155 VdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~m 234 (339)
.++|..++..++++.++...|..++.+......+.......++++|+++|++..+. +.+..++..+++ ++..+|.+.
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~--vs~~ti~~~ 185 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVAR--VTEVTVRNR 185 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHT--CCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC--CCHHHHHHH
Confidence 35677789999999999999999999999887788888999999999999999764 557888888776 789999999
Q ss_pred HHHHHHHcCCccc
Q 041510 235 EEKVLEFLNFEMG 247 (339)
Q Consensus 235 E~~IL~~L~f~l~ 247 (339)
=..|.+.|+..+.
T Consensus 186 ~~~l~~~l~~~~~ 198 (200)
T 1ais_B 186 YKELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHHTCCCC
T ss_pred HHHHHHHcCCCCC
Confidence 9999999986653
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.18 E-value=0.078 Score=46.36 Aligned_cols=86 Identities=6% Similarity=0.006 Sum_probs=69.7
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHH
Q 041510 155 VDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEM 234 (339)
Q Consensus 155 VdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~m 234 (339)
.++|...+..++++.++..+|..++..-+....+.......++++|+++|++..+. +.+..++...++ ++..+|.+.
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~-~~~~~~i~~~~~--v~~~tI~~~ 179 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAE-KRTQKEIGDIAG--VADVTIRQS 179 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSS-CCCHHHHHHHHT--CCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCC-CCCHHHHHHHhC--CCHHHHHHH
Confidence 45667888999999999999999999988877777888999999999999999764 445677766654 678888887
Q ss_pred HHHHHHHcC
Q 041510 235 EEKVLEFLN 243 (339)
Q Consensus 235 E~~IL~~L~ 243 (339)
=..|+..++
T Consensus 180 ~~~l~~~l~ 188 (207)
T 1c9b_A 180 YRLIYPRAP 188 (207)
T ss_dssp HHHHGGGHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 22
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=90.91 E-value=1.4 Score=39.56 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=61.5
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHh-hcCcCccchhHHHHHHHHHHhhhhccCCCCChh---hhhhhhcCCCCHHHH
Q 041510 156 DWLVEVLEEYKLVSDTLYLTVSYVDRFL-SSHALSRNKLQLLGVCCMLIASKYEEISPPHVE---DFCYITDNTYMKEEV 231 (339)
Q Consensus 156 dWl~ev~~~l~L~~eTl~lAV~llDRfL-s~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~---dl~~i~~~~~t~~ei 231 (339)
++|......++.+.++..+|..++..-+ ....+.......||++|+++|+++-+...|... ..-...+..++.++|
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l 227 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELL 227 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHH
Confidence 4556667778888888888988885544 333355667889999999999999765544221 122222445899999
Q ss_pred HHHHHHHHHHc
Q 041510 232 VEMEEKVLEFL 242 (339)
Q Consensus 232 ~~mE~~IL~~L 242 (339)
..+-..|+..+
T Consensus 228 ~~~~~~i~~~~ 238 (257)
T 2ivx_A 228 DELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=88.75 E-value=0.54 Score=41.82 Aligned_cols=84 Identities=14% Similarity=0.110 Sum_probs=61.0
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHH
Q 041510 156 DWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEME 235 (339)
Q Consensus 156 dWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE 235 (339)
++|...+..++++.++...|..++..-+....+.......||++|+++|++.-+...| .+-.... .++.++|..+=
T Consensus 136 ~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~--~~~~~~~--~~~~~~i~~~~ 211 (235)
T 1zp2_A 136 TSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIP--KLLDLIK--STDAFKVILCV 211 (235)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHH--HHHHHCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCC--CCcchhh--cCCHHHHHHHH
Confidence 3455556678889999999999999887776677777889999999999998554222 1111121 57888888888
Q ss_pred HHHHHHcC
Q 041510 236 EKVLEFLN 243 (339)
Q Consensus 236 ~~IL~~L~ 243 (339)
..|+....
T Consensus 212 ~~i~~ly~ 219 (235)
T 1zp2_A 212 QRIISIYY 219 (235)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88877543
No 24
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=88.37 E-value=1.8 Score=38.78 Aligned_cols=88 Identities=9% Similarity=0.147 Sum_probs=64.2
Q ss_pred HHHHHHHHHccCch----HHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChh------hhhhhhcCC
Q 041510 156 DWLVEVLEEYKLVS----DTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVE------DFCYITDNT 225 (339)
Q Consensus 156 dWl~ev~~~l~L~~----eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~------dl~~i~~~~ 225 (339)
+++...+..++.+. ++..+|..+++.-+....+.......||++|+++|+++-+...|... ..-..-...
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~ 232 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQD 232 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSS
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccC
Confidence 56777778888876 57788999998887776777778899999999999998765433211 111111235
Q ss_pred CCHHHHHHHHHHHHHHcC
Q 041510 226 YMKEEVVEMEEKVLEFLN 243 (339)
Q Consensus 226 ~t~~ei~~mE~~IL~~L~ 243 (339)
++.++|..+-..|+...+
T Consensus 233 ~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 233 VPVDVLEDICHQILDLYS 250 (258)
T ss_dssp CCHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 899999999999987655
No 25
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=87.50 E-value=1.4 Score=40.45 Aligned_cols=82 Identities=11% Similarity=0.130 Sum_probs=60.9
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHH
Q 041510 156 DWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEME 235 (339)
Q Consensus 156 dWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE 235 (339)
++|...+..++.+.++..+|..++..-+....+.......||++|+++|++...... ...-.. -.++.++|..+-
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~---~~W~~~--~~~~~~~l~~~~ 233 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA---RQWFAE--LSVDMEKILEII 233 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC---HHHHHT--SCSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh---hhHHHH--HCCCHHHHHHHH
Confidence 556667777888889999999999887766666667788999999999999866432 222222 247888888887
Q ss_pred HHHHHHc
Q 041510 236 EKVLEFL 242 (339)
Q Consensus 236 ~~IL~~L 242 (339)
..|+...
T Consensus 234 ~~il~ly 240 (285)
T 3rgf_B 234 RVILKLY 240 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 26
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=87.34 E-value=1.5 Score=41.70 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=61.5
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHhh-cCcCccchhHHHHHHHHHHhhhhccCCCCCh---hhhhhhhcCCCCHHHH
Q 041510 156 DWLVEVLEEYKLVSDTLYLTVSYVDRFLS-SHALSRNKLQLLGVCCMLIASKYEEISPPHV---EDFCYITDNTYMKEEV 231 (339)
Q Consensus 156 dWl~ev~~~l~L~~eTl~lAV~llDRfLs-~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l---~dl~~i~~~~~t~~ei 231 (339)
+||..+...++.+.++..+|.+++..-+. ...+.......||++|+++|+++-+...|.. ...-...+..++.++|
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l 234 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELL 234 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHH
Confidence 35555666778888888889888855542 3334556678999999999999976544321 1122223346899999
Q ss_pred HHHHHHHHHHcC
Q 041510 232 VEMEEKVLEFLN 243 (339)
Q Consensus 232 ~~mE~~IL~~L~ 243 (339)
..+-..|+..++
T Consensus 235 ~~i~~~il~~y~ 246 (358)
T 2pk2_A 235 DELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 27
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=84.07 E-value=3.8 Score=36.68 Aligned_cols=85 Identities=15% Similarity=0.206 Sum_probs=55.9
Q ss_pred HHHHHHHHHccCchHHH----HHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCC----hhhhhhhhcCCCC
Q 041510 156 DWLVEVLEEYKLVSDTL----YLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPH----VEDFCYITDNTYM 227 (339)
Q Consensus 156 dWl~ev~~~l~L~~eTl----~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~----l~dl~~i~~~~~t 227 (339)
+|+......++++.++. ..|..+++.-+....+.....-.+|++|+++|.+.....+.. ...+..+++ ++
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg--~~ 231 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILN--FS 231 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHT--CC
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHC--cC
Confidence 34444555666665542 356777776665555666778899999999999985222222 445555554 78
Q ss_pred HHHHHHHHHHHHHHc
Q 041510 228 KEEVVEMEEKVLEFL 242 (339)
Q Consensus 228 ~~ei~~mE~~IL~~L 242 (339)
.++|..+=..|.+.+
T Consensus 232 ~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 232 TNTVRTVKDQVSEAF 246 (254)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899988877776654
No 28
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=82.95 E-value=4.7 Score=36.11 Aligned_cols=86 Identities=10% Similarity=-0.026 Sum_probs=58.0
Q ss_pred HHHHHHHHHHccCchHH----HHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCC-----CChhhhhhhhcCC
Q 041510 155 VDWLVEVLEEYKLVSDT----LYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISP-----PHVEDFCYITDNT 225 (339)
Q Consensus 155 VdWl~ev~~~l~L~~eT----l~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~-----p~l~dl~~i~~~~ 225 (339)
.+|+......++++.++ ..+|-.+++.-+....+.....-.+|++|+++|.+.-+..+ .-...+..++ .
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t--~ 229 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASIL--G 229 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHH--T
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHH--C
Confidence 45566666666776554 34577777766665666677788999999999999876432 1233444444 4
Q ss_pred CCHHHHHHHHHHHHHHc
Q 041510 226 YMKEEVVEMEEKVLEFL 242 (339)
Q Consensus 226 ~t~~ei~~mE~~IL~~L 242 (339)
++.++|..+=..|...+
T Consensus 230 ~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 230 CDVSVLQAAVEQILTSV 246 (257)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 78888888777776654
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=82.59 E-value=3.2 Score=37.26 Aligned_cols=85 Identities=9% Similarity=-0.020 Sum_probs=59.9
Q ss_pred HHHHHHHHHHccCch-HHHHHHHHHHHHHhhcCc-CccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHH
Q 041510 155 VDWLVEVLEEYKLVS-DTLYLTVSYVDRFLSSHA-LSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVV 232 (339)
Q Consensus 155 VdWl~ev~~~l~L~~-eTl~lAV~llDRfLs~~~-i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~ 232 (339)
.+|+...+..++++. .+..+|-.+++.-+.... +.....-.+|++|+++|++.-+. ++-...+..+++ ++.++|.
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g--~~~~~i~ 216 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTG--YTLESLK 216 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhC--cCHHHHH
Confidence 467777777788765 677788888887554444 55666789999999999987654 333344555553 7888888
Q ss_pred HHHHHHHHHc
Q 041510 233 EMEEKVLEFL 242 (339)
Q Consensus 233 ~mE~~IL~~L 242 (339)
.+=..|...+
T Consensus 217 ~~~~~l~~~~ 226 (260)
T 2cch_B 217 PCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777776654
No 30
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=80.69 E-value=0.32 Score=46.13 Aligned_cols=55 Identities=5% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccC
Q 041510 156 DWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEI 210 (339)
Q Consensus 156 dWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~ 210 (339)
++|..++..++++.++...|..++.+......+......-|+++|++||+.+.+.
T Consensus 237 ~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~ 291 (345)
T 3k7a_M 237 TYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCC
Confidence 7788889999999999999999999988777777788899999999999998654
No 31
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=79.96 E-value=2.4 Score=38.41 Aligned_cols=82 Identities=7% Similarity=0.039 Sum_probs=56.9
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHH
Q 041510 156 DWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEME 235 (339)
Q Consensus 156 dWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE 235 (339)
+||...+...+++.++..+|-.+++.-+....+.....-.+|++|+++|++.-+.. +-..++..+++ ++.++|..+=
T Consensus 140 ~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~tg--~~~~~l~~~~ 216 (269)
T 2b9r_A 140 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG-EWTPTLQHYLS--YTEESLLPVM 216 (269)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC-CSCTTHHHHSC--CCSSTTTTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHC--CCHHHHHHHH
Confidence 56777777888888888889999998887666777778899999999999986543 22233443433 4555555444
Q ss_pred HHHHH
Q 041510 236 EKVLE 240 (339)
Q Consensus 236 ~~IL~ 240 (339)
..|+.
T Consensus 217 ~~l~~ 221 (269)
T 2b9r_A 217 QHLAK 221 (269)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 32
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=75.09 E-value=9.8 Score=35.12 Aligned_cols=88 Identities=11% Similarity=0.034 Sum_probs=54.6
Q ss_pred HHHHHHHHccCchH----HHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCCh----hhhhhhhcCCCCH
Q 041510 157 WLVEVLEEYKLVSD----TLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHV----EDFCYITDNTYMK 228 (339)
Q Consensus 157 Wl~ev~~~l~L~~e----Tl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l----~dl~~i~~~~~t~ 228 (339)
||......++...+ ....|-++++.-+....+.....-.||++|+++|.+.-+..++.. ..+..++ .++.
T Consensus 174 fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~t--g~~~ 251 (306)
T 3g33_B 174 FLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGIT--GTEV 251 (306)
T ss_dssp GHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHH--TCCH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH--CCCH
Confidence 34444445554433 224455666655555566667788999999999999866544332 2333444 4789
Q ss_pred HHHHHHHHHHHHHcCCcc
Q 041510 229 EEVVEMEEKVLEFLNFEM 246 (339)
Q Consensus 229 ~ei~~mE~~IL~~L~f~l 246 (339)
++|..+-..|+..+.=.+
T Consensus 252 ~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 252 DCLRACQEQIEAALRESL 269 (306)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998888887776443
No 33
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=74.83 E-value=13 Score=34.98 Aligned_cols=65 Identities=9% Similarity=-0.041 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhCCCHHhHHHHHHh
Q 041510 272 LYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKECHKV 338 (339)
Q Consensus 272 ~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~dL~~C~~~ 338 (339)
.+...|..+...++-...+-..+...+|+||||+|.+.-+ .+.-...+..+++++..+|-.|+..
T Consensus 145 ~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~--~prtl~eI~~~~~v~~keigr~~k~ 209 (345)
T 4bbr_M 145 IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE--VARTFKEIQSLIHVKTKEFGKTLNI 209 (345)
T ss_dssp HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC--CBCCHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC--CCccHHHHHHHhCCCHHHHHHHHHH
Confidence 3444677776666654444567889999999999999874 4444567888999999999988765
No 34
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=74.64 E-value=12 Score=34.80 Aligned_cols=91 Identities=8% Similarity=0.149 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHc---cCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCC-hhhhhhhhcCCCCHH
Q 041510 154 LVDWLVEVLEEY---KLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPH-VEDFCYITDNTYMKE 229 (339)
Q Consensus 154 lVdWl~ev~~~l---~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~-l~dl~~i~~~~~t~~ 229 (339)
+..++..+...+ +.+.....+|..++..-+....+.......||++|+++|++..+...|. ..++....+..++.+
T Consensus 167 L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~ 246 (323)
T 1jkw_A 167 FEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLS 246 (323)
T ss_dssp HHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHH
Confidence 344554444432 2334556778788876655555555667899999999999987765444 233434334567888
Q ss_pred HHHHHHHHHHHHcCC
Q 041510 230 EVVEMEEKVLEFLNF 244 (339)
Q Consensus 230 ei~~mE~~IL~~L~f 244 (339)
++...=..|+..+..
T Consensus 247 ~l~~~~~~i~~l~~~ 261 (323)
T 1jkw_A 247 QLLDIMKSMRNLVKK 261 (323)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 888888888776543
No 35
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=73.10 E-value=8.6 Score=34.62 Aligned_cols=90 Identities=8% Similarity=0.070 Sum_probs=57.2
Q ss_pred HHHHHHHHHHccCchHHH----HHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccC---C-CC----Chhhhhhhh
Q 041510 155 VDWLVEVLEEYKLVSDTL----YLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEI---S-PP----HVEDFCYIT 222 (339)
Q Consensus 155 VdWl~ev~~~l~L~~eTl----~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~---~-~p----~l~dl~~i~ 222 (339)
.+|+..+...++++.++. ..|..+++..+....+.....-.+|++|+++|...-+. . ++ ....+..++
T Consensus 158 ~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~ 237 (271)
T 2w96_A 158 HDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVI 237 (271)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHH
Confidence 356666666777766653 34556666544334444556789999999999976432 1 11 123344444
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcc
Q 041510 223 DNTYMKEEVVEMEEKVLEFLNFEM 246 (339)
Q Consensus 223 ~~~~t~~ei~~mE~~IL~~L~f~l 246 (339)
.++.++|..+=..|+..++=.+
T Consensus 238 --~v~~~~l~~c~~~i~~l~~~~~ 259 (271)
T 2w96_A 238 --KCDPDCLRACQEQIEALLESSL 259 (271)
T ss_dssp --TSCHHHHHHHHHHHHHHHTTTT
T ss_pred --CcCHHHHHHHHHHHHHHHHHHH
Confidence 4789999998888888776444
No 36
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=69.98 E-value=27 Score=30.67 Aligned_cols=88 Identities=13% Similarity=0.241 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHhhc---CcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHH
Q 041510 153 TLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSS---HALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKE 229 (339)
Q Consensus 153 ~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~---~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ 229 (339)
.+.+-|..++++-+++..++--||-+--.|.-. .+..-.+-+-|+++|+.||+---. .|..+.++..+ |.+..
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~-~PiplaE~r~l-D~sL~-- 89 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQ-QPLPLAEVRCL-DSSLG-- 89 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHH-CTTCC--
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcC-CCccHHHHHHH-hhhhh--
Confidence 345666899999999999999999999999864 455667789999999999996433 35556665433 44444
Q ss_pred HHHHHHHHHHHHcCC
Q 041510 230 EVVEMEEKVLEFLNF 244 (339)
Q Consensus 230 ei~~mE~~IL~~L~f 244 (339)
||.---.+|++.++-
T Consensus 90 Dvelrr~Eiv~~l~l 104 (260)
T 3h4c_A 90 DVELRRADIVRELHL 104 (260)
T ss_dssp CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccC
Confidence 333333445666653
No 37
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=50.72 E-value=1.1e+02 Score=28.24 Aligned_cols=80 Identities=9% Similarity=-0.018 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHH-Hhhhhhcc--cCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHh
Q 041510 249 PTTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAE-LSLLDYGC--LWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFS 325 (339)
Q Consensus 249 pTp~~FL~~fl~~~~~~~~~~~~~i~~la~~l~e-lsL~d~~~--~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~t 325 (339)
++..+|+.++....+-. .....++.++++ +......+ ......-+-++|+.+|.+.+. +...|+....++.
T Consensus 75 ISI~~Yl~RI~k~t~ls-----~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ld-D~~ysN~~wAkVg 148 (293)
T 2pmi_B 75 ISIFNYFIRLTKFSSLE-----HCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLC-DSFSTNAHYAKVG 148 (293)
T ss_dssp SCHHHHHHHHHHTTTCC-----HHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHC-SSCCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhcc-ccccChhHhhhcc
Confidence 45677777777654321 111112333333 22222222 346677888999999999997 4677899999999
Q ss_pred CCCHHhHHH
Q 041510 326 GYRPSDLKE 334 (339)
Q Consensus 326 gy~~~dL~~ 334 (339)
|++..||-.
T Consensus 149 Gisl~ELN~ 157 (293)
T 2pmi_B 149 GVRCHELNI 157 (293)
T ss_dssp TSCHHHHHH
T ss_pred CcCHHHHHH
Confidence 999988754
No 38
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=42.90 E-value=63 Score=29.10 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=39.8
Q ss_pred HHHHHHHHhhhh-hcccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhC--CCHHhHHHHH
Q 041510 276 LSCYLAELSLLD-YGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSG--YRPSDLKECH 336 (339)
Q Consensus 276 la~~l~elsL~d-~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tg--y~~~dL~~C~ 336 (339)
+|..+++-.+.- ........-.+|+||+++|.+.-.. .++-...+..+++ |+.++|..+-
T Consensus 73 lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~-~~p~l~~~~~i~~~~~~~~ei~~mE 135 (283)
T 1w98_B 73 LAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEI-YPPKLHQFAYVTDGACSGDEILTME 135 (283)
T ss_dssp HHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCS-SCCCHHHHHHTTTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhccc-CCCcHHHHHHHHcCCCCHHHHHHHH
Confidence 444444444433 2345677889999999999998643 2344556667774 8888887763
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=36.59 E-value=1.1e+02 Score=27.05 Aligned_cols=58 Identities=14% Similarity=0.009 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhC--CCHHhHHH
Q 041510 276 LSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSG--YRPSDLKE 334 (339)
Q Consensus 276 la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tg--y~~~dL~~ 334 (339)
+|-.+++--+..........-.+|++|+++|.+.-.. .++-...+..+|+ |+.+++..
T Consensus 72 lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~-~p~~~~~l~~~~~~~yt~~~i~~ 131 (252)
T 1f5q_B 72 LAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAY-MPIKATQLAYLCGGATTADKLLT 131 (252)
T ss_dssp HHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCS-SCCCHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHhCCCCCHHHHHH
Confidence 4444445444444445567789999999999998653 2334456667775 77888764
No 40
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=33.96 E-value=96 Score=28.63 Aligned_cols=66 Identities=11% Similarity=-0.007 Sum_probs=46.0
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHHhhcC---cCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhc
Q 041510 158 LVEVLEEYKLVSDTLYLTVSYVDRFLSSH---ALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITD 223 (339)
Q Consensus 158 l~ev~~~l~L~~eTl~lAV~llDRfLs~~---~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~ 223 (339)
..++|..++++..|.-.|..++.+.-+.. .-..+.-+..-.+||++|+.-.+....++..++..++
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 45789999999999999999999966641 1222334444455699999877777777887776653
No 41
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=33.53 E-value=28 Score=28.36 Aligned_cols=86 Identities=22% Similarity=0.301 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHhh------cCcCccchhHHHHHHHHHHhhhh--ccCCCCChhhhhh
Q 041510 152 QTLVDWLVEVLEEY---KLVSDTLYLTVSYVDRFLS------SHALSRNKLQLLGVCCMLIASKY--EEISPPHVEDFCY 220 (339)
Q Consensus 152 ~~lVdWl~ev~~~l---~L~~eTl~lAV~llDRfLs------~~~i~~~~lqLvavtcL~IAsK~--EE~~~p~l~dl~~ 220 (339)
..+|-|+..|-..+ |..+..+-.-.+++=-||- ...-...++|-+..|||++|--| .|+..| +.-|.-
T Consensus 28 ~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVFvYmL~r~~v~~~~~se~eLqa~~lTCLYlsYSYmGNEISYP-LKPFlv 106 (149)
T 3o0g_D 28 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNEISYP-LKPFLV 106 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSSCSCCHHHHHHHHHHHHHHSCTTCCSHHHHHHHHHHHHHHHHHHHCSSSCCC-SGGGCC
T ss_pred chhhhhHHhhhHHHHHccchhcccccchHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHhccccccc-Ccchhh
Confidence 37999999988875 4444433333333333432 22234456999999999999888 455544 333322
Q ss_pred hhcCCCCHHHHHHHHHHHHHHc
Q 041510 221 ITDNTYMKEEVVEMEEKVLEFL 242 (339)
Q Consensus 221 i~~~~~t~~ei~~mE~~IL~~L 242 (339)
+ -+++.+-+-=..|.+.+
T Consensus 107 --~--~~k~~FW~rcl~iin~~ 124 (149)
T 3o0g_D 107 --E--SCKEAFWDRCLSVINLM 124 (149)
T ss_dssp --C--SCHHHHHHHHHHHHHHH
T ss_pred --c--ccHHHHHHHHHHHHHhh
Confidence 1 13555544444444443
No 42
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=30.55 E-value=52 Score=27.09 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHH
Q 041510 194 QLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVV 232 (339)
Q Consensus 194 qLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~ 232 (339)
.|+-++|-++|..+.+-.|-.++.+..|.+ -||+++-.
T Consensus 112 ~Lldl~c~~vA~~ikgkt~eeir~~f~I~n-d~t~eEe~ 149 (160)
T 2p1m_A 112 NLLDLTCQTVADMIKGKTPEEIRTTFNIKN-DFTPEEEE 149 (160)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHTTCCC-CCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHHH
Confidence 578899999999998876666777777644 48876643
No 43
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=29.23 E-value=1.9e+02 Score=21.97 Aligned_cols=79 Identities=10% Similarity=0.159 Sum_probs=52.8
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHHhhcCc------CccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHH
Q 041510 158 LVEVLEEYKLVSDTLYLTVSYVDRFLSSHA------LSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEV 231 (339)
Q Consensus 158 l~ev~~~l~L~~eTl~lAV~llDRfLs~~~------i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei 231 (339)
+.++|..||+.. ..-.|-.++++|=..-+ +..+ --....+|+|.|||.--..++. ..++..++ .++.++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s-~P~f~aaA~~~acr~~K~kVdK-~KL~~~s~--lk~~~f 80 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLS-RPLFTSAALLSACKILKLKVDK-NKMVATSG--VKKAIF 80 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTT-SHHHHHHHHHHHHHHTTCCCCH-HHHHHTTC--BCHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhcccccc-ccHHHHHHHHHHHHHHccCCCH-HHHHHHHC--CCHHHH
Confidence 457888999765 77788899999975432 2223 3455668999999997776543 33444433 567777
Q ss_pred HHHHHHHHHH
Q 041510 232 VEMEEKVLEF 241 (339)
Q Consensus 232 ~~mE~~IL~~ 241 (339)
-+.+..+-+.
T Consensus 81 ~~l~~~~e~~ 90 (95)
T 3m03_A 81 DRLCKQLEKI 90 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 44
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=27.20 E-value=46 Score=19.39 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHcCCc
Q 041510 228 KEEVVEMEEKVLEFLNFE 245 (339)
Q Consensus 228 ~~ei~~mE~~IL~~L~f~ 245 (339)
.++|..+|..|-+.|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 578999999999999987
No 45
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=26.18 E-value=1e+02 Score=26.23 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHhh------cCcCccchhHHHHHHHHHHhhhh--ccCCCCChhhhhh
Q 041510 152 QTLVDWLVEVLEEY---KLVSDTLYLTVSYVDRFLS------SHALSRNKLQLLGVCCMLIASKY--EEISPPHVEDFCY 220 (339)
Q Consensus 152 ~~lVdWl~ev~~~l---~L~~eTl~lAV~llDRfLs------~~~i~~~~lqLvavtcL~IAsK~--EE~~~p~l~dl~~ 220 (339)
..+|-||..|-..+ |..+..|-.-.+++--||- ...-...++|-+.+|||+||--| .|+..| +.-|+-
T Consensus 73 ~d~VmWLR~VDRsLLLQGWQD~aFI~PaNvVFvYmL~R~~v~~~~~te~eLqa~vLTCLYlsYSYmGNEISYP-LKPFlv 151 (208)
T 1unl_D 73 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNEISYP-LKPFLV 151 (208)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCSCCHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHHHHHHHCSSSCCC-SGGGCC
T ss_pred cceehhHHhhhHHHHHccccccccccchhhhhHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHhhCcccccc-Ccceee
Confidence 37899999998876 4444433333333333332 22334456999999999999888 455544 333322
Q ss_pred hhcCCCCHHHHHHHHHHHHHHcCCcc--cCCCHHHHHHHHHHHhh
Q 041510 221 ITDNTYMKEEVVEMEEKVLEFLNFEM--GSPTTKSFLRIFTRVTE 263 (339)
Q Consensus 221 i~~~~~t~~ei~~mE~~IL~~L~f~l--~~pTp~~FL~~fl~~~~ 263 (339)
.-+++.+-+-=..|+..+.=++ ....|..|-+.|...-+
T Consensus 152 ----e~~ke~FWdRCl~ii~~~S~kML~iN~~p~~Ftevf~eLK~ 192 (208)
T 1unl_D 152 ----ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKN 192 (208)
T ss_dssp ----SSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred ----cCCHHHHHHHHHHHHHhhchhhheecCCccHHHHHHHHHHh
Confidence 1245555544444444443332 12345555555554433
No 46
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=25.95 E-value=1.1e+02 Score=23.34 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhCCCHHhHHHHH
Q 041510 293 YLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPSDLKECH 336 (339)
Q Consensus 293 ~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~dL~~C~ 336 (339)
+.--.-++||+|.+.+....+.+ ...|...+|.++.++....
T Consensus 43 ~s~P~f~aaA~~~acr~~K~kVd--K~KL~~~s~lk~~~f~~l~ 84 (95)
T 3m03_A 43 LSRPLFTSAALLSACKILKLKVD--KNKMVATSGVKKAIFDRLC 84 (95)
T ss_dssp TTSHHHHHHHHHHHHHHTTCCCC--HHHHHHTTCBCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHccCCC--HHHHHHHHCCCHHHHHHHH
Confidence 33445567888888888754333 7889999999999987643
No 47
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=24.17 E-value=27 Score=20.16 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=8.0
Q ss_pred CCCCCCCCccc
Q 041510 34 HHALETPRRVV 44 (339)
Q Consensus 34 ~~~~~~~~r~~ 44 (339)
+.-|||+||.+
T Consensus 13 ~sTPPKkKrk~ 23 (26)
T 1q1s_A 13 HAAPPKKKRKV 23 (26)
T ss_pred ccCCCcccccc
Confidence 55678888863
Done!