Query 041510
Match_columns 339
No_of_seqs 209 out of 1637
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 13:14:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041510.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041510hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w98b2 a.74.1.1 (B:88-227) G1 100.0 3.3E-35 2.4E-39 247.7 17.3 136 109-247 3-140 (140)
2 d2cchb1 a.74.1.1 (B:181-308) C 100.0 1.7E-34 1.3E-38 239.6 16.0 128 118-248 1-128 (128)
3 d1g3nc1 a.74.1.1 (C:16-147) Vi 100.0 1.6E-34 1.2E-38 241.2 15.6 131 115-247 2-132 (132)
4 d1bu2a1 a.74.1.1 (A:22-148) Vi 100.0 1.3E-33 9.2E-38 234.3 14.5 126 119-247 2-127 (127)
5 d1f5qb1 a.74.1.1 (B:6-146) Vir 100.0 4.3E-30 3.1E-34 216.5 9.2 106 142-247 35-140 (141)
6 d2i53a1 a.74.1.1 (A:14-157) Cy 99.8 1.5E-20 1.1E-24 157.8 9.8 99 149-248 35-144 (144)
7 d1jkwa1 a.74.1.1 (A:11-161) Cy 99.8 8.2E-19 6E-23 148.2 12.6 99 149-248 45-150 (151)
8 d2ivxa1 a.74.1.1 (A:7-149) Cyc 99.8 1.1E-18 8.3E-23 145.6 10.3 99 149-248 29-143 (143)
9 d2cchb2 a.74.1.1 (B:309-432) C 99.7 1.1E-16 7.8E-21 130.9 8.8 84 249-338 1-85 (124)
10 d1w98b1 a.74.1.1 (B:228-357) G 98.2 4.6E-06 3.4E-10 66.5 10.3 81 248-337 1-87 (130)
11 d1vola1 a.74.1.2 (A:113-207) T 98.1 2.1E-05 1.5E-09 59.5 11.6 90 155-247 6-95 (95)
12 d1aisb1 a.74.1.2 (B:1108-1205) 97.9 4.6E-05 3.3E-09 57.8 11.2 88 154-244 5-92 (98)
13 d2i53a2 a.74.1.1 (A:158-267) C 97.9 1.1E-05 8E-10 62.9 6.4 85 250-337 2-95 (110)
14 d1aisb2 a.74.1.2 (B:1206-1300) 97.7 0.00012 8.5E-09 55.2 9.9 88 156-246 5-92 (95)
15 d2ivxa2 a.74.1.1 (A:150-262) C 97.7 6.8E-05 4.9E-09 58.7 8.4 81 250-337 2-89 (113)
16 d1vola2 a.74.1.2 (A:208-316) T 97.3 0.00052 3.8E-08 52.8 8.6 83 249-338 2-84 (109)
17 d1aisb2 a.74.1.2 (B:1206-1300) 97.3 0.00069 5E-08 50.7 9.0 82 250-338 2-83 (95)
18 d1vola2 a.74.1.2 (A:208-316) T 97.2 0.00045 3.2E-08 53.2 7.9 86 155-243 5-90 (109)
19 d1jkwa2 a.74.1.1 (A:162-287) C 96.9 0.0012 8.9E-08 52.2 7.5 70 250-319 1-72 (126)
20 d2ivxa2 a.74.1.1 (A:150-262) C 96.1 0.023 1.7E-06 43.7 10.1 87 157-243 6-96 (113)
21 d1aisb1 a.74.1.2 (B:1108-1205) 95.6 0.039 2.8E-06 40.8 9.4 81 251-338 5-85 (98)
22 d1vola1 a.74.1.2 (A:113-207) T 95.4 0.042 3E-06 40.4 8.7 81 251-338 5-85 (95)
23 d2i53a2 a.74.1.1 (A:158-267) C 93.4 0.28 2E-05 36.8 9.6 73 170-242 23-101 (110)
24 d1jkwa1 a.74.1.1 (A:11-161) Cy 73.8 5 0.00036 30.9 7.5 39 272-310 68-106 (151)
25 d1f5qb1 a.74.1.1 (B:6-146) Vir 72.9 6.6 0.00048 30.0 8.0 60 275-335 66-127 (141)
26 d2cchb1 a.74.1.1 (B:181-308) C 71.6 5.1 0.00037 30.0 6.9 61 273-334 51-113 (128)
27 d1f5qb2 a.74.1.1 (B:147-252) V 70.2 2.3 0.00017 29.8 4.0 65 271-338 22-89 (106)
28 d2i53a1 a.74.1.1 (A:14-157) Cy 68.5 7.1 0.00052 29.6 7.2 38 273-310 57-94 (144)
29 d1bu2a1 a.74.1.1 (A:22-148) Vi 67.6 15 0.0011 27.2 8.9 59 275-334 53-113 (127)
30 d2ivxa1 a.74.1.1 (A:7-149) Cyc 65.0 3.7 0.00027 31.2 4.8 38 274-311 52-89 (143)
31 d2cchb2 a.74.1.1 (B:309-432) C 64.1 14 0.001 27.3 8.1 73 166-241 16-89 (124)
32 d1w98b2 a.74.1.1 (B:88-227) G1 55.5 19 0.0014 27.0 7.5 62 273-335 63-127 (140)
33 d1g3nc1 a.74.1.1 (C:16-147) Vi 52.7 18 0.0013 26.9 6.9 60 274-334 57-118 (132)
34 d1bu2a2 a.74.1.1 (A:149-250) V 34.2 41 0.003 23.1 5.5 56 272-327 24-79 (102)
35 d1unld_ a.74.1.1 (D:) CDK5 act 31.7 15 0.0011 28.1 3.0 62 152-213 28-100 (150)
No 1
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=3.3e-35 Score=247.75 Aligned_cols=136 Identities=31% Similarity=0.572 Sum_probs=128.3
Q ss_pred Ccccc-ccHHHHHHHHHHhHhhccCCCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcC-
Q 041510 109 ALRNC-AYSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSH- 186 (339)
Q Consensus 109 d~q~~-eY~~dI~~~l~~~E~e~~~~p~~~yl~~~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~- 186 (339)
+|++| .|++|||.+|.++|. ++.+.++|+.+ |++++++||.++|+||++++..++++.+|+|+||+|||||++..
T Consensus 3 ~p~~~~~~~~dI~~~l~~~E~--~~~~~~~~l~~-q~~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~ 79 (140)
T d1w98b2 3 LPVLSWANREEVWKIMLNKEK--TYLRDQHFLEQ-HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQE 79 (140)
T ss_dssp SCCCSSSCHHHHHHHHHHHTT--TSCCCTTGGGG-CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCC
T ss_pred CccccccCHHHHHHHHHHHHH--hhCCChHHHhC-CCCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhccc
Confidence 68999 999999999988775 57777889865 99999999999999999999999999999999999999999864
Q ss_pred cCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHcCCccc
Q 041510 187 ALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEMEEKVLEFLNFEMG 247 (339)
Q Consensus 187 ~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE~~IL~~L~f~l~ 247 (339)
.+.++++||+|+||||||+|+||..+|.+.+++++|++.|+.++|.+||..||++|+|+++
T Consensus 80 ~v~~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~Ln 140 (140)
T d1w98b2 80 NVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS 140 (140)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred cccHHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCcCC
Confidence 5899999999999999999999999999999999999999999999999999999999985
No 2
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00 E-value=1.7e-34 Score=239.62 Aligned_cols=128 Identities=54% Similarity=0.877 Sum_probs=122.9
Q ss_pred HHHHHHHHhHhhccCCCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHH
Q 041510 118 SIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLG 197 (339)
Q Consensus 118 dI~~~l~~~E~e~~~~p~~~yl~~~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva 197 (339)
|||.||+++|. +++|.++|+.+ |+++++.+|..+|+||++++..++++++|+|+||+|||||++...+.++++||+|
T Consensus 1 dI~~~l~~~E~--~~~p~~~~l~~-q~~i~~~~R~~li~W~~~v~~~~~l~~~t~~lAv~llDr~l~~~~i~~~~~qLi~ 77 (128)
T d2cchb1 1 DIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVG 77 (128)
T ss_dssp HHHHHHHHHHH--HTCCCTTGGGG-CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred CHHHHHHHHHh--hhCCCchhhhC-CCCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcccCCchHHHHHHH
Confidence 79999999886 57888899975 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHcCCcccC
Q 041510 198 VCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEMEEKVLEFLNFEMGS 248 (339)
Q Consensus 198 vtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~ 248 (339)
+||||||||+||..+|.+.++++++++.|+.++|.+||+.||++|+|++..
T Consensus 78 ~~cl~iAsK~ee~~~~~l~~l~~~~~~~~t~~~i~~mE~~IL~~L~~~l~a 128 (128)
T d2cchb1 78 TAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAA 128 (128)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCeecC
Confidence 999999999999999999999999999999999999999999999999863
No 3
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=100.00 E-value=1.6e-34 Score=241.22 Aligned_cols=131 Identities=24% Similarity=0.519 Sum_probs=125.4
Q ss_pred cHHHHHHHHHHhHhhccCCCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhH
Q 041510 115 YSSSIYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQ 194 (339)
Q Consensus 115 Y~~dI~~~l~~~E~e~~~~p~~~yl~~~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lq 194 (339)
|.++|+.+|.+.| .++.|.++|+..+|+++|+.||..+|+||.+|+..++++++|+|+||+|||||+++..++++++|
T Consensus 2 ~~~~i~~~l~~~E--~~~~p~~~y~~~~q~~it~~~R~~lidWl~~v~~~~~l~~et~~lAv~llDrfls~~~v~~~~lq 79 (132)
T d1g3nc1 2 CEDRIFYNILEIE--PRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQ 79 (132)
T ss_dssp HHHHHHHHHHHHG--GGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHH
T ss_pred chHHHHHHHHHHH--HHHCCChHHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCcccCcHHHHH
Confidence 4678999997665 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHcCCccc
Q 041510 195 LLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEMEEKVLEFLNFEMG 247 (339)
Q Consensus 195 LvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE~~IL~~L~f~l~ 247 (339)
|+|+||||||+|+||..+|.+.++++++++.|+.++|.+||..||++|+|++.
T Consensus 80 Lia~tcl~iAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~w~l~ 132 (132)
T d1g3nc1 80 KTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTE 132 (132)
T ss_dssp HHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCC
Confidence 99999999999999999999999999999999999999999999999999974
No 4
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=100.00 E-value=1.3e-33 Score=234.27 Aligned_cols=126 Identities=25% Similarity=0.499 Sum_probs=118.8
Q ss_pred HHHHHHHhHhhccCCCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHH
Q 041510 119 IYKHLRSLEIEDKTRPLPNYLEKVQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGV 198 (339)
Q Consensus 119 I~~~l~~~E~e~~~~p~~~yl~~~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvav 198 (339)
|+++|+..| ...|...++..+|+++|+.||.++||||++++.+++++++|+|+||+|||||++...+.++++||+|+
T Consensus 2 ~~~~l~~~e---~~~p~~~~~~~~q~~it~~~R~~lidWl~~v~~~~~l~~eTl~lAv~llDryl~~~~i~~~~lqLi~~ 78 (127)
T d1bu2a1 2 VLNNLKLRE---LLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGA 78 (127)
T ss_dssp CHHHHHHTT---TSSCCCSSTTTTCSSSCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHH
T ss_pred hHHHHHHHH---HhCCCchHHhhcCCcCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcccccccHHHHHHHHH
Confidence 456665555 57888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHcCCccc
Q 041510 199 CCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEMEEKVLEFLNFEMG 247 (339)
Q Consensus 199 tcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE~~IL~~L~f~l~ 247 (339)
||||||||+||..||.+++++++|++.|+.++|.+||..||++|+||+.
T Consensus 79 tcL~IAsK~ee~~~~~l~~l~~~~~~~~t~~ei~~mE~~IL~~L~~dl~ 127 (127)
T d1bu2a1 79 ACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTE 127 (127)
T ss_dssp HHHHHHHHHSSSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999999999999974
No 5
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]}
Probab=99.96 E-value=4.3e-30 Score=216.49 Aligned_cols=106 Identities=19% Similarity=0.367 Sum_probs=103.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhh
Q 041510 142 VQNDISINMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYI 221 (339)
Q Consensus 142 ~Q~~it~~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i 221 (339)
+|+++|+.+|..+|+||++++.+++++++|+|+||+|||||++...+.++++||+|+||||||+|+||..+|.+.+++++
T Consensus 35 ~~~~it~~~R~~lvdWm~~v~~~~~l~~etl~lAv~llDrfls~~~i~~~~lqL~a~tcL~IAsK~ee~~~~~~~~l~~~ 114 (141)
T d1f5qb1 35 VDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYL 114 (141)
T ss_dssp HHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred cCccCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCccc
Q 041510 222 TDNTYMKEEVVEMEEKVLEFLNFEMG 247 (339)
Q Consensus 222 ~~~~~t~~ei~~mE~~IL~~L~f~l~ 247 (339)
|++.|+.++|.+||..||++|+|.+.
T Consensus 115 ~~~~yt~~ei~~mE~~IL~~L~w~~~ 140 (141)
T d1f5qb1 115 CGGATTADKLLTLEVKSLDTLSWVAD 140 (141)
T ss_dssp HCTTCCHHHHHHHHHHHHHHTTTCCC
T ss_pred hcCCCCHHHHHHHHHHHHHHCCccCC
Confidence 99999999999999999999999985
No 6
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82 E-value=1.5e-20 Score=157.77 Aligned_cols=99 Identities=26% Similarity=0.421 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhh------
Q 041510 149 NMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYIT------ 222 (339)
Q Consensus 149 ~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~------ 222 (339)
.+|..+++||.+++.+++++..|+++|+.|||||++..++...+++++|+||||||+|+||. +..+.+++.++
T Consensus 35 ~~R~~~~~~i~~~~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~~lva~acl~LA~K~eE~-~~~l~~vi~~~~~~~~~ 113 (144)
T d2i53a1 35 RYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEET-PKKCKDIIKTARSLLND 113 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHhhh
Confidence 58999999999999999999999999999999999999999999999999999999999997 55677776432
Q ss_pred -----cCCCCHHHHHHHHHHHHHHcCCcccC
Q 041510 223 -----DNTYMKEEVVEMEEKVLEFLNFEMGS 248 (339)
Q Consensus 223 -----~~~~t~~ei~~mE~~IL~~L~f~l~~ 248 (339)
.+.+++++|++||..||++|+|++++
T Consensus 114 ~~~~~~~~~~~~~i~~~E~~iL~~L~Fdl~V 144 (144)
T d2i53a1 114 VQFGQFGDDPKEEVMVLERILLQTIKFDLQV 144 (144)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHTTTCCCC
T ss_pred hhhhhhchhhHHHHHHHHHHHHHHCCCeeeC
Confidence 34567899999999999999999874
No 7
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.77 E-value=8.2e-19 Score=148.22 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhh----
Q 041510 149 NMRQTLVDWLVEVLEEYK--LVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYIT---- 222 (339)
Q Consensus 149 ~~R~~lVdWl~ev~~~l~--L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~---- 222 (339)
.+|...++||.++|..|+ ++.+|+++|+.|||||++..++...+++++|+|||+||||+||. ++.+.+++...
T Consensus 45 ~l~~~~~~~l~~~~~~~k~~l~~~~~~tA~~~~~RF~~~~s~~~~~~~li~~acl~LA~K~ee~-~~~~~~~~~~~~~~~ 123 (151)
T d1jkwa1 45 TLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRESP 123 (151)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSCH
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHHHccc-CCCHHHHHHHHHhhc
Confidence 699999999999999886 88999999999999999999999999999999999999999996 67799887643
Q ss_pred -cCCCCHHHHHHHHHHHHHHcCCcccC
Q 041510 223 -DNTYMKEEVVEMEEKVLEFLNFEMGS 248 (339)
Q Consensus 223 -~~~~t~~ei~~mE~~IL~~L~f~l~~ 248 (339)
++.++.++|++||..||++|+|++.+
T Consensus 124 ~~~~~~~~~i~~~E~~iL~~L~f~L~V 150 (151)
T d1jkwa1 124 LGQEKALEQILEYELLLIQQLNFHLIV 150 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccccccHHHHHHHHHHHHHHcCCeeee
Confidence 34578999999999999999999864
No 8
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.76 E-value=1.1e-18 Score=145.65 Aligned_cols=99 Identities=20% Similarity=0.342 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcC----
Q 041510 149 NMRQTLVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDN---- 224 (339)
Q Consensus 149 ~~R~~lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~---- 224 (339)
..|...++||.+++.+++++..|+++|+.|||||++.+++.+.+++++|+||||||+|+||. +..+.+++..+..
T Consensus 29 ~~R~~~~~~i~~~~~~l~l~~~t~~~A~~l~~Rf~~~~s~~~~~~~~va~acl~LA~K~eE~-~~~~~~ii~~~~~~~~~ 107 (143)
T d2ivxa1 29 SCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHACLHP 107 (143)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHhcc
Confidence 58999999999999999999999999999999999999999999999999999999999997 4457776543221
Q ss_pred ------------CCCHHHHHHHHHHHHHHcCCcccC
Q 041510 225 ------------TYMKEEVVEMEEKVLEFLNFEMGS 248 (339)
Q Consensus 225 ------------~~t~~ei~~mE~~IL~~L~f~l~~ 248 (339)
.+.+++|+.||..||+.|+|++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~Fdl~V 143 (143)
T d2ivxa1 108 LEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITI 143 (143)
T ss_dssp TSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred cchhhhhchhhhHHHHHHHHHHHHHHHHHcCCeeeC
Confidence 235789999999999999999874
No 9
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.65 E-value=1.1e-16 Score=130.93 Aligned_cols=84 Identities=31% Similarity=0.498 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhhhhhc-ccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhCC
Q 041510 249 PTTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYG-CLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGY 327 (339)
Q Consensus 249 pTp~~FL~~fl~~~~~~~~~~~~~i~~la~~l~elsL~d~~-~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tgy 327 (339)
||+.+||++|...... .+.++..+|.||+|++++|++ |++|+||.||+|||++|+.+++ ..+|++.|+++|||
T Consensus 1 PT~~~FL~ry~~~~~~----~d~~~~~la~Yl~ElsLl~~~~~l~~~PS~lAaaai~lar~~l~--~~~W~~~L~~~t~y 74 (124)
T d2cchb2 1 PTVNQFLTQYFLHQQP----ANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVT--GQSWPESLIRKTGY 74 (124)
T ss_dssp CCHHHHHHHHHTTCSS----CCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHH--SCCSCHHHHHHHCC
T ss_pred CchhHHHHHHHHHHcc----CcHHHHHHHHHHHHHHHHhHHHHHccChHHHHHHHHHHHHHHhC--CCCchHHHHHHhCC
Confidence 8999999877543221 245677899999999999985 9999999999999999999996 45799999999999
Q ss_pred CHHhHHHHHHh
Q 041510 328 RPSDLKECHKV 338 (339)
Q Consensus 328 ~~~dL~~C~~~ 338 (339)
+.+||.+|+..
T Consensus 75 ~~~~l~~c~~~ 85 (124)
T d2cchb2 75 TLESLKPCLMD 85 (124)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999974
No 10
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.20 E-value=4.6e-06 Score=66.46 Aligned_cols=81 Identities=28% Similarity=0.372 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHhhhcCCCc-----hhHHHH-HHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChHHH
Q 041510 248 SPTTKSFLRIFTRVTEENCKKP-----DLLYEF-LSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWEL 321 (339)
Q Consensus 248 ~pTp~~FL~~fl~~~~~~~~~~-----~~~i~~-la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L 321 (339)
+.|+..||..|+++...+.... -.+.++ -...|++++.+|..+++|+-|+|||||++. +.+ .+..
T Consensus 1 PiT~~~WLn~YmQl~~~~~~~~~l~Pqys~~~fiq~aqLLDLC~LDi~sl~fsYsvLAAaAl~h---~~~------~e~~ 71 (130)
T d1w98b1 1 PLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYH---FSS------SELM 71 (130)
T ss_dssp CCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHH---TSC------HHHH
T ss_pred CcchhHHHHHHHHHHhcCCccceecCCCCHHHHHHHHHHHHHHHhhhhhhcCchHHHHHHHHHH---ccc------HHHH
Confidence 4689999999998875432111 002222 256789999999999999999999999993 221 4667
Q ss_pred HHHhCCCHHhHHHHHH
Q 041510 322 QTFSGYRPSDLKECHK 337 (339)
Q Consensus 322 ~~~tgy~~~dL~~C~~ 337 (339)
.++||++.++|.+|++
T Consensus 72 ~kvSGl~w~~l~~Cv~ 87 (130)
T d1w98b1 72 QKVSGYQWCDIENCVK 87 (130)
T ss_dssp HHHSCCCHHHHHHHHH
T ss_pred HHccCccHHHHHHHHH
Confidence 8999999999999997
No 11
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.09 E-value=2.1e-05 Score=59.49 Aligned_cols=90 Identities=14% Similarity=0.269 Sum_probs=80.6
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHH
Q 041510 155 VDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEM 234 (339)
Q Consensus 155 VdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~m 234 (339)
..-|-.+|..++|+..+...|..++.+......+.......++++|+++||+.++. |-+..++...++ .+..+|.+.
T Consensus 6 ~~~I~~~~~~L~L~~~i~~~A~~i~~~~~~~~~~~Gr~~~~i~AA~iY~acr~~~~-p~t~~eIa~~~~--i~~~~i~k~ 82 (95)
T d1vola1 6 FKEITTMADRINLPRNKVDRTNNLFRQAYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISKKEIGRC 82 (95)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTTC--SCHHHHHHH
T ss_pred HHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHcCC-CCCHHHHHHHhC--CCHHHHHHH
Confidence 45678899999999999999999999999988888888999999999999998764 778899988765 889999999
Q ss_pred HHHHHHHcCCccc
Q 041510 235 EEKVLEFLNFEMG 247 (339)
Q Consensus 235 E~~IL~~L~f~l~ 247 (339)
-+.|.+.|+.++.
T Consensus 83 ~k~i~~~L~~~v~ 95 (95)
T d1vola1 83 FKLILKALETSVD 95 (95)
T ss_dssp HHHHHHHTTCCCC
T ss_pred HHHHHHHHCCcCC
Confidence 9999999998763
No 12
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=97.94 E-value=4.6e-05 Score=57.84 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHH
Q 041510 154 LVDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVE 233 (339)
Q Consensus 154 lVdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~ 233 (339)
...-|-.+|..++|+..+...|..++.+..............++++|+++||+.++. |-+..|++..++ .+..+|.+
T Consensus 5 a~~~I~~~~~~L~L~~~i~~~A~~i~k~~~~~~~~~g~~~~~iaaA~iY~Acr~~~~-~~t~~eIa~~~~--is~~ti~k 81 (98)
T d1aisb1 5 ALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKV-PRTLDEIADIAR--VDKKEIGR 81 (98)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTC-CCCHHHHHHHTT--SCHHHHHH
T ss_pred HHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHC--CCHHHHHH
Confidence 345578899999999999999999999999888888888999999999999999865 678899988765 78999999
Q ss_pred HHHHHHHHcCC
Q 041510 234 MEEKVLEFLNF 244 (339)
Q Consensus 234 mE~~IL~~L~f 244 (339)
..+.|++.|+-
T Consensus 82 ~yk~i~~~L~l 92 (98)
T d1aisb1 82 SYRFIARNLNL 92 (98)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 99999999873
No 13
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.86 E-value=1.1e-05 Score=62.94 Aligned_cols=85 Identities=13% Similarity=0.156 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCC---------CCChHH
Q 041510 250 TTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKI---------HPWSWE 320 (339)
Q Consensus 250 Tp~~FL~~fl~~~~~~~~~~~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~---------~~W~~~ 320 (339)
+|+.||-.|+..++.+.. ....+...|+.++.-++...-++.|+|.+||+|||++|.+..+... .+|-..
T Consensus 2 HP~~~L~~~~~~l~~~~~-~~~~l~q~AW~~lNDs~rT~lcL~~~P~~IA~a~I~lA~~~~~~~ip~~~~~~~~~~W~~~ 80 (110)
T d2i53a2 2 HPYQFLLKYAKQLKGDKN-KIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQ 80 (110)
T ss_dssp CHHHHHHHHHHTBCSCHH-HHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGG
T ss_pred CCcHHHHHHHHHhcCccc-cchHHHHHHHHHHHHHhcCCchhccCcHHHHHHHHHHHHHHhCCCCCCcccCcccccHHHH
Confidence 588899998887754321 1235677899999999999999999999999999999999886332 234332
Q ss_pred HHHHhCCCHHhHHHHHH
Q 041510 321 LQTFSGYRPSDLKECHK 337 (339)
Q Consensus 321 L~~~tgy~~~dL~~C~~ 337 (339)
+ ..+.+.+++.+++.
T Consensus 81 f--~~dvt~e~i~~i~~ 95 (110)
T d2i53a2 81 F--VQDVPVDVLEDICH 95 (110)
T ss_dssp T--SSSCCHHHHHHHHH
T ss_pred H--HccCCHHHHHHHHH
Confidence 2 23788999988765
No 14
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=97.71 E-value=0.00012 Score=55.18 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=78.7
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHH
Q 041510 156 DWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEME 235 (339)
Q Consensus 156 dWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE 235 (339)
|||-.+|..++|+.++.-.|..++........+......-++++|+++|++.... +.++.+++..++ .+...|.+.-
T Consensus 5 d~I~R~~~~L~L~~~i~~~A~~i~~~~~~~~~~~Gr~p~~vaAA~iY~a~r~~~~-~~t~~eIa~~~~--vs~~tI~~~y 81 (95)
T d1aisb2 5 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVAR--VTEVTVRNRY 81 (95)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHT--CCHHHHHHHH
T ss_pred HHHHHHHHHcCcCHHHHHHHHHHHHHHHHcCCcCCCcHHhHHHHHHHHHHHHcCC-CcCHHHHHHHHC--CCHHHHHHHH
Confidence 7888999999999999999999999999888888888999999999999999865 567888888775 7888999999
Q ss_pred HHHHHHcCCcc
Q 041510 236 EKVLEFLNFEM 246 (339)
Q Consensus 236 ~~IL~~L~f~l 246 (339)
+.|...|+..+
T Consensus 82 k~l~~~l~~~~ 92 (95)
T d1aisb2 82 KELVEKLKIKV 92 (95)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHhCCCC
Confidence 99999998765
No 15
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.68 E-value=6.8e-05 Score=58.70 Aligned_cols=81 Identities=20% Similarity=0.128 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhhh-hhcccCCcHHHHHHHHHHHHHHHhCCCCC------CChHHHH
Q 041510 250 TTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLL-DYGCLWYLPSLVAASSIFLSRFIMQPKIH------PWSWELQ 322 (339)
Q Consensus 250 Tp~~FL~~fl~~~~~~~~~~~~~i~~la~~l~elsL~-d~~~~~~~PS~iAaAai~lA~~~l~~~~~------~W~~~L~ 322 (339)
+|+.|+-.|++.++. ...+...|+.++.-++. ..-+++|+|.+||+|||+||.++.+...+ +|-..+
T Consensus 2 HPhk~ll~~~k~l~~-----~~~l~q~AW~~lnDs~r~T~lcL~~~P~~IA~a~I~LA~~~~~~~~p~~~~~~~Ww~~f- 75 (113)
T d2ivxa2 2 HPHTDVVKCTQLVRA-----SKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV- 75 (113)
T ss_dssp CHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT-
T ss_pred CCcHHHHHHHHHhCC-----ChHHHHHHHHHHHHHhccCCeeeecCcHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHH-
Confidence 588899888888753 23567789999999987 55679999999999999999998864332 354333
Q ss_pred HHhCCCHHhHHHHHH
Q 041510 323 TFSGYRPSDLKECHK 337 (339)
Q Consensus 323 ~~tgy~~~dL~~C~~ 337 (339)
..+.+.+++.+.+.
T Consensus 76 -d~~vt~e~i~~i~~ 89 (113)
T d2ivxa2 76 -DPTVTLELLDELTH 89 (113)
T ss_dssp -CSSCCHHHHHHHHH
T ss_pred -ccCCCHHHHHHHHH
Confidence 23677888776654
No 16
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.27 E-value=0.00052 Score=52.83 Aligned_cols=83 Identities=14% Similarity=0.064 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhCCC
Q 041510 249 PTTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYR 328 (339)
Q Consensus 249 pTp~~FL~~fl~~~~~~~~~~~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tgy~ 328 (339)
.||.+|+.+|...++-+ ..+...|..+...+.-..-...-.|..+|+||||+|.+..+ .+.-...+...+|.+
T Consensus 2 i~~~d~i~Rf~s~L~L~-----~~i~~~A~~i~~~~~~~~~~~Gr~p~~iaAa~iY~a~r~~~--~~~t~~eIa~~~~vs 74 (109)
T d1vola2 2 ITTGDFMSRFCSNLCLP-----KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASA--EKRTQKEIGDIAGVA 74 (109)
T ss_dssp CCGGGTHHHHHHHHTCC-----HHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSS--SCCCHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHcCcC-----HHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHCCC
Confidence 58899999999887532 24555677766665544445678899999999999999875 344467899999999
Q ss_pred HHhHHHHHHh
Q 041510 329 PSDLKECHKV 338 (339)
Q Consensus 329 ~~dL~~C~~~ 338 (339)
+.++..|+..
T Consensus 75 ~~tI~k~yk~ 84 (109)
T d1vola2 75 DVTIRQSYRL 84 (109)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 17
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=97.27 E-value=0.00069 Score=50.71 Aligned_cols=82 Identities=6% Similarity=-0.015 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhCCCH
Q 041510 250 TTKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRP 329 (339)
Q Consensus 250 Tp~~FL~~fl~~~~~~~~~~~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~ 329 (339)
.|-+|+.+|...++-. ..+...+..+...+.-..-...-.|..+|+||||+|.+..+ .+.-...+...+|.+.
T Consensus 2 ~P~d~I~R~~~~L~L~-----~~i~~~A~~i~~~~~~~~~~~Gr~p~~vaAA~iY~a~r~~~--~~~t~~eIa~~~~vs~ 74 (95)
T d1aisb2 2 KPTDYVNKFADELGLS-----EKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEG--EKRTQREVAEVARVTE 74 (95)
T ss_dssp CGGGGHHHHHHHHTCC-----HHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTT--CCCCHHHHHHHHTCCH
T ss_pred CHHHHHHHHHHHcCcC-----HHHHHHHHHHHHHHHHcCCcCCCcHHhHHHHHHHHHHHHcC--CCcCHHHHHHHHCCCH
Confidence 6889999998877532 24555677777766655455668999999999999999885 3444678999999999
Q ss_pred HhHHHHHHh
Q 041510 330 SDLKECHKV 338 (339)
Q Consensus 330 ~dL~~C~~~ 338 (339)
.+|..|++.
T Consensus 75 ~tI~~~yk~ 83 (95)
T d1aisb2 75 VTVRNRYKE 83 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
No 18
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.24 E-value=0.00045 Score=53.23 Aligned_cols=86 Identities=6% Similarity=0.006 Sum_probs=73.6
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHH
Q 041510 155 VDWLVEVLEEYKLVSDTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEM 234 (339)
Q Consensus 155 VdWl~ev~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~m 234 (339)
-|||-.+|..++|+..+...|..++..+.....+.......++++|+++|++.... +.+..++..+++ .+..+|.+.
T Consensus 5 ~d~i~Rf~s~L~L~~~i~~~A~~i~~~~~~~~~~~Gr~p~~iaAa~iY~a~r~~~~-~~t~~eIa~~~~--vs~~tI~k~ 81 (109)
T d1vola2 5 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAE-KRTQKEIGDIAG--VADVTIRQS 81 (109)
T ss_dssp GGTHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSS-CCCHHHHHHHHT--CCHHHHHHH
T ss_pred HHHHHHHHHHcCcCHHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHC--CCHHHHHHH
Confidence 36888999999999999999999999999988888888999999999999998765 668889888775 678888877
Q ss_pred HHHHHHHcC
Q 041510 235 EEKVLEFLN 243 (339)
Q Consensus 235 E~~IL~~L~ 243 (339)
-+.|...++
T Consensus 82 yk~l~~~~~ 90 (109)
T d1vola2 82 YRLIYPRAP 90 (109)
T ss_dssp HHHHGGGHH
T ss_pred HHHHHHHHH
Confidence 777755543
No 19
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.89 E-value=0.0012 Score=52.18 Aligned_cols=70 Identities=13% Similarity=0.010 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHhhhcC--CCchhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChH
Q 041510 250 TTKSFLRIFTRVTEENC--KKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSW 319 (339)
Q Consensus 250 Tp~~FL~~fl~~~~~~~--~~~~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~ 319 (339)
+|+.-|.-|+.-++... .....++...|+-++.-+++..-++.|+||+||+|||++|...++.+...|..
T Consensus 1 HPyRpl~g~l~dl~~~~~~~~~~~~l~~~a~~~lnds~~Td~~l~y~P~qIalaal~~a~~~~~~~l~~y~~ 72 (126)
T d1jkwa2 1 NPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLS 72 (126)
T ss_dssp CSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHH
T ss_pred CCCccHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHHHcCCeeeeeCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 46666666664443221 12244677788999999999888899999999999999999999765555543
No 20
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.10 E-value=0.023 Score=43.73 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=67.0
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHHh-hcCcCccchhHHHHHHHHHHhhhhccCCCCChh---hhhhhhcCCCCHHHHH
Q 041510 157 WLVEVLEEYKLVSDTLYLTVSYVDRFL-SSHALSRNKLQLLGVCCMLIASKYEEISPPHVE---DFCYITDNTYMKEEVV 232 (339)
Q Consensus 157 Wl~ev~~~l~L~~eTl~lAV~llDRfL-s~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~---dl~~i~~~~~t~~ei~ 232 (339)
.|++....++.+.+..-.|-+++--.+ +..-.-...-+.||++|++||+|+.....|.-. ..-.+.+...|.++|.
T Consensus 6 ~ll~~~k~l~~~~~l~q~AW~~lnDs~r~T~lcL~~~P~~IA~a~I~LA~~~~~~~~p~~~~~~~Ww~~fd~~vt~e~i~ 85 (113)
T d2ivxa2 6 DVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLD 85 (113)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhccCCeeeecCcHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHccCCCHHHHH
Confidence 466677778888999999998886655 466667788899999999999999887665432 2344556667899999
Q ss_pred HHHHHHHHHcC
Q 041510 233 EMEEKVLEFLN 243 (339)
Q Consensus 233 ~mE~~IL~~L~ 243 (339)
++...||...+
T Consensus 86 ~i~~~il~lYe 96 (113)
T d2ivxa2 86 ELTHEFLQILE 96 (113)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887754
No 21
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=95.62 E-value=0.039 Score=40.79 Aligned_cols=81 Identities=10% Similarity=-0.075 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhCCCHH
Q 041510 251 TKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPS 330 (339)
Q Consensus 251 p~~FL~~fl~~~~~~~~~~~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~ 330 (339)
++..|+.|...++- ...+...|..+...+.-+.-+..-.|..+|+||||+|.+..+ .+.-...+...+|+++.
T Consensus 5 a~~~I~~~~~~L~L-----~~~i~~~A~~i~k~~~~~~~~~g~~~~~iaaA~iY~Acr~~~--~~~t~~eIa~~~~is~~ 77 (98)
T d1aisb1 5 ALSELDRITAQLKL-----PRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK--VPRTLDEIADIARVDKK 77 (98)
T ss_dssp HHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT--CCCCHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHcCc-----CHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHCCCHH
Confidence 45566666655532 224555677777777666555678899999999999999884 45556789999999999
Q ss_pred hHHHHHHh
Q 041510 331 DLKECHKV 338 (339)
Q Consensus 331 dL~~C~~~ 338 (339)
+|..|++.
T Consensus 78 ti~k~yk~ 85 (98)
T d1aisb1 78 EIGRSYRF 85 (98)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 22
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.36 E-value=0.042 Score=40.37 Aligned_cols=81 Identities=7% Similarity=-0.052 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhCCCHH
Q 041510 251 TKSFLRIFTRVTEENCKKPDLLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGYRPS 330 (339)
Q Consensus 251 p~~FL~~fl~~~~~~~~~~~~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tgy~~~ 330 (339)
++..++.|...++- ...+...|..+...+.-..-...-.|..+|+||||+|.+..+ .+.-...+...+|++..
T Consensus 5 a~~~I~~~~~~L~L-----~~~i~~~A~~i~~~~~~~~~~~Gr~~~~i~AA~iY~acr~~~--~p~t~~eIa~~~~i~~~ 77 (95)
T d1vola1 5 AFKEITTMADRINL-----PRNKVDRTNNLFRQAYEQKSLKGRANDAIASACLYIACRQEG--VPRTFKEICAVSRISKK 77 (95)
T ss_dssp HHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHTT--CCCCHHHHHTTTCSCHH
T ss_pred HHHHHHHHHHHcCc-----CHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHcC--CCCCHHHHHHHhCCCHH
Confidence 45556666655432 234555666666666554444567899999999999999874 45557789999999999
Q ss_pred hHHHHHHh
Q 041510 331 DLKECHKV 338 (339)
Q Consensus 331 dL~~C~~~ 338 (339)
+|..|++.
T Consensus 78 ~i~k~~k~ 85 (95)
T d1vola1 78 EIGRCFKL 85 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988864
No 23
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.38 E-value=0.28 Score=36.83 Aligned_cols=73 Identities=8% Similarity=0.139 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhhcCcCccchhHHHHHHHHHHhhhhccCCCCChhh------hhhhhcCCCCHHHHHHHHHHHHHHc
Q 041510 170 DTLYLTVSYVDRFLSSHALSRNKLQLLGVCCMLIASKYEEISPPHVED------FCYITDNTYMKEEVVEMEEKVLEFL 242 (339)
Q Consensus 170 eTl~lAV~llDRfLs~~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~d------l~~i~~~~~t~~ei~~mE~~IL~~L 242 (339)
+..-.|-+++--.+...-.-...-+.||++|++||+|.-+...|...+ .-.......+.++|.++-..||+.-
T Consensus 23 ~l~q~AW~~lNDs~rT~lcL~~~P~~IA~a~I~lA~~~~~~~ip~~~~~~~~~~W~~~f~~dvt~e~i~~i~~~il~lY 101 (110)
T d2i53a2 23 KLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLY 101 (110)
T ss_dssp HHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCCchhccCcHHHHHHHHHHHHHHhCCCCCCcccCcccccHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 355667777766665666677778999999999999998876654432 2223344578999999988888765
No 24
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.84 E-value=5 Score=30.91 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHh
Q 041510 272 LYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIM 310 (339)
Q Consensus 272 ~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l 310 (339)
.....|..+++--++......+.|-.+|+||++||.++-
T Consensus 68 ~~~~tA~~~~~RF~~~~s~~~~~~~li~~acl~LA~K~e 106 (151)
T d1jkwa1 68 SVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVD 106 (151)
T ss_dssp HHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHHHc
Confidence 445567777777777788889999999999999999985
No 25
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]}
Probab=72.87 E-value=6.6 Score=30.01 Aligned_cols=60 Identities=13% Similarity=-0.020 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhC--CCHHhHHHH
Q 041510 275 FLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSG--YRPSDLKEC 335 (339)
Q Consensus 275 ~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tg--y~~~dL~~C 335 (339)
++|-.+++..+.......-..-.+|++|+++|.++-.. .++....+..+++ |+.+++...
T Consensus 66 ~lAv~llDrfls~~~i~~~~lqL~a~tcL~IAsK~ee~-~~~~~~~l~~~~~~~yt~~ei~~m 127 (141)
T d1f5qb1 66 PLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAY-MPIKATQLAYLCGGATTADKLLTL 127 (141)
T ss_dssp HHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCS-SCCCHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHhcCCCCHHHHHHH
Confidence 35555666555544444456678999999999998754 4455667777776 788888653
No 26
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=71.61 E-value=5.1 Score=29.97 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhC--CCHHhHHH
Q 041510 273 YEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSG--YRPSDLKE 334 (339)
Q Consensus 273 i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tg--y~~~dL~~ 334 (339)
..++|..+++..+.......-....+|++|+++|.+.-.. .++....+..+++ |+.+||..
T Consensus 51 t~~lAv~llDr~l~~~~i~~~~~qLi~~~cl~iAsK~ee~-~~~~l~~l~~~~~~~~t~~~i~~ 113 (128)
T d2cchb1 51 TLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEI-YPPEVAEFVYITDDTYTKKQVLR 113 (128)
T ss_dssp HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCS-SCCCHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHcCCCCHHHHHH
Confidence 3445666666666544444445568899999999998764 3445556677776 67888764
No 27
>d1f5qb2 a.74.1.1 (B:147-252) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]}
Probab=70.16 E-value=2.3 Score=29.77 Aligned_cols=65 Identities=15% Similarity=0.043 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChH---HHHHHhCCCHHhHHHHHHh
Q 041510 271 LLYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSW---ELQTFSGYRPSDLKECHKV 338 (339)
Q Consensus 271 ~~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~---~L~~~tgy~~~dL~~C~~~ 338 (339)
+.+..+++--+-.+++|.....-+|..|.+||+.+.+.. +...+.. ...+-.-++.++|..|.++
T Consensus 22 lniynlcrpkifcalcdgrsamkrpvlitlacmhltmnq---kydyyenridgvckslyitkeelhqccdl 89 (106)
T d1f5qb2 22 LNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQ---KYDYYENRIDGVCKSLYITKEELHQCCDL 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHhccchheeeecCChhhhcCchhhhHHHHHHHHhc---chhHHHhhhhhhhhhheecHHHHHhhhhh
Confidence 345666666666788898888889999999999987542 2233333 4555567899999999864
No 28
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.55 E-value=7.1 Score=29.60 Aligned_cols=38 Identities=8% Similarity=-0.077 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHh
Q 041510 273 YEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIM 310 (339)
Q Consensus 273 i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l 310 (339)
....|..+++-.+.-..+..+.+-.+|+||+++|.++-
T Consensus 57 t~~~A~~~~dRf~~~~~~~~~~~~lva~acl~LA~K~e 94 (144)
T d2i53a1 57 TLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVE 94 (144)
T ss_dssp HHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHhh
Confidence 34567777788888888889999999999999999985
No 29
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=67.55 E-value=15 Score=27.23 Aligned_cols=59 Identities=14% Similarity=-0.008 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhC--CCHHhHHH
Q 041510 275 FLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSG--YRPSDLKE 334 (339)
Q Consensus 275 ~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tg--y~~~dL~~ 334 (339)
++|-.+++..+.......-.--.+|+||+++|.++-.. .++-...+..+++ |+.+++..
T Consensus 53 ~lAv~llDryl~~~~i~~~~lqLi~~tcL~IAsK~ee~-~~~~l~~l~~~~~~~~t~~ei~~ 113 (127)
T d1bu2a1 53 PLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTV-KPMTVSKLTYLSCDCFTNLELIN 113 (127)
T ss_dssp HHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHSSS-SCCCHHHHHHTTTTSSCHHHHHH
T ss_pred HHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHcCCCCHHHHHH
Confidence 45666666665554444555678999999999998653 3344556777775 67888764
No 30
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.00 E-value=3.7 Score=31.20 Aligned_cols=38 Identities=5% Similarity=0.083 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhC
Q 041510 274 EFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQ 311 (339)
Q Consensus 274 ~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~ 311 (339)
...|..+++-.++-..+..+.+-.+|+||+++|.++-.
T Consensus 52 ~~~A~~l~~Rf~~~~s~~~~~~~~va~acl~LA~K~eE 89 (143)
T d2ivxa1 52 INTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEE 89 (143)
T ss_dssp HHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHhcc
Confidence 44677777777777788899999999999999999853
No 31
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=64.12 E-value=14 Score=27.33 Aligned_cols=73 Identities=10% Similarity=-0.054 Sum_probs=50.0
Q ss_pred cCchHHHHHHHHHHHHHhhc-CcCccchhHHHHHHHHHHhhhhccCCCCChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 041510 166 KLVSDTLYLTVSYVDRFLSS-HALSRNKLQLLGVCCMLIASKYEEISPPHVEDFCYITDNTYMKEEVVEMEEKVLEF 241 (339)
Q Consensus 166 ~L~~eTl~lAV~llDRfLs~-~~i~~~~lqLvavtcL~IAsK~EE~~~p~l~dl~~i~~~~~t~~ei~~mE~~IL~~ 241 (339)
+.+.++.++|-++++.-|.. ..+..-.--.+|++|+++|-+.-...+ -..++...++ |+.+|+..+=..|.+.
T Consensus 16 ~~d~~~~~la~Yl~ElsLl~~~~~l~~~PS~lAaaai~lar~~l~~~~-W~~~L~~~t~--y~~~~l~~c~~~L~~~ 89 (124)
T d2cchb2 16 PANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQS-WPESLIRKTG--YTLESLKPCLMDLHQT 89 (124)
T ss_dssp SCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCC-SCHHHHHHHC--CCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhHHHHHccChHHHHHHHHHHHHHHhCCCC-chHHHHHHhC--CCHHHHHHHHHHHHHH
Confidence 34556777888888776654 334455566789999999998866543 3456666665 7899998776666554
No 32
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.50 E-value=19 Score=27.04 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhhhhc-ccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhC--CCHHhHHHH
Q 041510 273 YEFLSCYLAELSLLDYG-CLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSG--YRPSDLKEC 335 (339)
Q Consensus 273 i~~la~~l~elsL~d~~-~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tg--y~~~dL~~C 335 (339)
...+|-.+++..+.... ...-.--.+|++|+++|.+.-.. .++....+..+++ |+.+||..+
T Consensus 63 t~~lAv~llDryl~~~~~v~~~~lqL~a~acL~IAsK~ee~-~~~~~~~l~~~~~~~~t~~ei~~m 127 (140)
T d1w98b2 63 TFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEI-YPPKLHQFAYVTDGACSGDEILTM 127 (140)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCS-SCCCHHHHHHTTTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccHHHHhHHHHHHHHHHHHHccc-CCCCHHHHHHHHcCCCCHHHHHHH
Confidence 34456666665443222 12233458999999999998754 3455566777764 778888753
No 33
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=52.70 E-value=18 Score=26.91 Aligned_cols=60 Identities=10% Similarity=-0.044 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHh--CCCHHhHHH
Q 041510 274 EFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFS--GYRPSDLKE 334 (339)
Q Consensus 274 ~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~t--gy~~~dL~~ 334 (339)
.++|-.+++..+.......-.--.+|++|+++|.++-.. .++=...+..++ .|+.+||..
T Consensus 57 ~~lAv~llDrfls~~~v~~~~lqLia~tcl~iAsK~ee~-~~~~~~~l~~~~~~~~t~~ei~~ 118 (132)
T d1g3nc1 57 VALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSL-TPISTSSLCYAAADSFSRQELID 118 (132)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCS-SCCCHHHHHHHTTTCSCHHHHHH
T ss_pred HHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHhccc-CCCCHHHHHHHHcCCCCHHHHHH
Confidence 335555666555433322223347899999999998643 223334566676 477888764
No 34
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=34.18 E-value=41 Score=23.10 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhhhhcccCCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhCC
Q 041510 272 LYEFLSCYLAELSLLDYGCLWYLPSLVAASSIFLSRFIMQPKIHPWSWELQTFSGY 327 (339)
Q Consensus 272 ~i~~la~~l~elsL~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~W~~~L~~~tgy 327 (339)
|+..++..-+--++..+...-.+|..|.++.+.-....-+.+-.+|...|+..+.+
T Consensus 24 ql~e~~s~tickaliqpniall~p~licaggllttiet~ntn~~~wt~yledl~~i 79 (102)
T d1bu2a2 24 QLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSI 79 (102)
T ss_dssp HHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHTCSSCSTHHHHGGGTTTC
T ss_pred HHHHHHHHHHHHHHcCCCccccCcceeecccceEEEeeCCCCccchHHHHHhhHHH
Confidence 44444444444566777777889999999999998888777788999888776543
No 35
>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.74 E-value=15 Score=28.05 Aligned_cols=62 Identities=26% Similarity=0.343 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHh------hcCcCccchhHHHHHHHHHHhhhh--ccCCCC
Q 041510 152 QTLVDWLVEVLEEY---KLVSDTLYLTVSYVDRFL------SSHALSRNKLQLLGVCCMLIASKY--EEISPP 213 (339)
Q Consensus 152 ~~lVdWl~ev~~~l---~L~~eTl~lAV~llDRfL------s~~~i~~~~lqLvavtcL~IAsK~--EE~~~p 213 (339)
..+|-|+..|-..+ |.....+-.-.+++=-|| .-..-...++|.+.+|||++|--| .|+..|
T Consensus 28 ~d~v~WlR~VDRsLLLQGWQD~~Fi~PaNvVFvYmL~Re~v~~~~~se~eLqa~vLtCLYlsYSYmGnEISYP 100 (150)
T d1unld_ 28 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNEISYP 100 (150)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCSCCHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHHHHHHHCSSSCCC
T ss_pred cchhhhHHhhhHHHHHhhhhhccccCccceeehHHHHHHhcCccccCHHHHHHHHHHHHHHHHHhcCcccccC
Confidence 37899999998876 333333333333333333 223334456999999999999888 455544
Done!