Query 041511
Match_columns 147
No_of_seqs 109 out of 1038
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:16:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qd7_I S17 ribosomal protein; 100.0 7.6E-37 2.6E-41 220.5 11.6 81 42-122 2-82 (89)
2 3r8n_Q 30S ribosomal protein S 100.0 2.3E-35 7.9E-40 208.9 6.2 78 42-119 2-79 (80)
3 3j20_R 30S ribosomal protein S 100.0 3.8E-34 1.3E-38 214.2 12.3 83 38-120 27-110 (113)
4 2vqe_Q 30S ribosomal protein S 100.0 2.2E-34 7.4E-39 213.1 9.5 81 42-122 3-83 (105)
5 3bbn_Q Ribosomal protein S17; 100.0 3.4E-34 1.2E-38 221.5 9.1 82 39-120 56-138 (142)
6 2xzm_Q Ribosomal protein S17 c 100.0 2.1E-32 7.2E-37 214.5 11.9 82 38-119 63-145 (157)
7 3u5c_L RP41, S18, YS12, 40S ri 100.0 3E-32 1E-36 213.4 10.5 82 39-120 65-147 (156)
8 2zkq_q 40S ribosomal protein S 100.0 5.7E-32 2E-36 212.2 9.4 82 38-119 66-149 (158)
9 3iz6_P 40S ribosomal protein S 100.0 4.6E-32 1.6E-36 213.3 -6.2 82 38-119 65-147 (161)
10 3iuw_A Activating signal coint 47.8 14 0.00047 25.7 2.9 57 62-118 10-66 (83)
11 1d7q_A Translation initiation 33.4 1.5E+02 0.0052 22.2 7.7 53 43-109 31-88 (143)
12 1jt8_A EIF-1A, probable transl 30.1 1.5E+02 0.005 20.9 6.5 52 43-108 20-77 (102)
13 3m7n_A Putative uncharacterize 29.7 66 0.0023 24.2 4.4 60 39-100 56-122 (179)
14 1g31_A GP31; chaperone, CO-cha 28.8 73 0.0025 23.0 4.3 15 86-100 59-73 (111)
15 3e1y_E Eukaryotic peptide chai 28.3 17 0.00058 27.8 0.8 51 39-98 16-69 (204)
16 1a62_A RHO; transcription term 28.3 73 0.0025 23.1 4.3 43 79-121 77-122 (130)
17 3i4o_A Translation initiation 27.6 74 0.0025 21.5 3.9 59 42-108 13-71 (79)
18 2ot2_A Hydrogenase isoenzymes 26.7 32 0.0011 24.0 2.0 17 85-101 37-53 (90)
19 4he6_A Peptidase family U32; u 24.9 69 0.0023 21.1 3.3 33 87-121 27-59 (89)
20 2dgy_A MGC11102 protein; EIF-1 23.1 2.1E+02 0.0071 20.4 7.8 51 44-108 16-72 (111)
21 2vl6_A SSO MCM N-TER, minichro 21.0 54 0.0018 25.8 2.5 25 77-101 211-236 (268)
22 3u5c_c S33, YS27, 40S ribosoma 20.4 82 0.0028 21.1 2.9 22 81-102 39-60 (67)
23 2v1q_A SLA1, cytoskeleton asse 20.3 62 0.0021 19.0 2.2 21 81-101 11-32 (60)
No 1
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=100.00 E-value=7.6e-37 Score=220.48 Aligned_cols=81 Identities=42% Similarity=0.616 Sum_probs=78.5
Q ss_pred cceEEEEEEeCCCCceEEEEEeeEEeecceeeEEeeeceEEEECCCCCCCCCCEEEEeecCcCCcceeEEEEEEEecccc
Q 041511 42 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPSRPLSKHKHWLVAEILKKARI 121 (147)
Q Consensus 42 ~k~l~G~VVS~km~KTvvV~V~r~~~hpkY~K~i~r~kK~~vHDp~n~~kvGDiV~I~ecRPiSK~K~f~V~eIi~k~~~ 121 (147)
.++|+|+|+|++|+|||+|+|+++++||+|+||++++++|+||||+|+|++||+|+|+|||||||+|+|.|++|++++..
T Consensus 2 ~k~l~G~VvS~Km~KTivV~ve~~~~hp~Y~K~~kr~kk~~aHDe~n~~k~GD~V~I~E~RPlSKtK~~~vv~iv~~a~~ 81 (89)
T 1qd7_I 2 RKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMETRPLSATKRFRLVEIVEKAVR 81 (89)
T ss_pred cEEEEEEEEecCCCceEEEEEEEEEEcCccceEEeccEEEEEeCCccCCCCCCEEEEEEcccCCCCEEEEEEEEEeecee
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 041511 122 Y 122 (147)
Q Consensus 122 ~ 122 (147)
+
T Consensus 82 ~ 82 (89)
T 1qd7_I 82 A 82 (89)
T ss_pred e
Confidence 4
No 2
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=100.00 E-value=2.3e-35 Score=208.93 Aligned_cols=78 Identities=49% Similarity=0.914 Sum_probs=75.9
Q ss_pred cceEEEEEEeCCCCceEEEEEeeEEeecceeeEEeeeceEEEECCCCCCCCCCEEEEeecCcCCcceeEEEEEEEecc
Q 041511 42 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPSRPLSKHKHWLVAEILKKA 119 (147)
Q Consensus 42 ~k~l~G~VVS~km~KTvvV~V~r~~~hpkY~K~i~r~kK~~vHDp~n~~kvGDiV~I~ecRPiSK~K~f~V~eIi~k~ 119 (147)
.++|+|+|+|++|+|||+|+|+++++||+|+||++++++|+||||+|+|++||+|+|+|||||||+|+|.|.+|++++
T Consensus 2 ~r~l~G~VvS~km~KTvvV~v~~~~~hp~Y~K~~kr~kk~~aHDe~n~~~~GD~V~I~e~RPlSKtk~~~v~~i~~~~ 79 (80)
T 3r8n_Q 2 IRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 79 (80)
T ss_dssp CSCBCCEEEECCSTTCCEEECCEEEEETTTEEEEEECCEEECBCGGGCCCTTCEEEEEEEEEEETTEEEEEEEEECCC
T ss_pred CeEEEEEEEecCCCCeEEEEEEEEEEcccccccEEecceEEEECCCCCCCCCCEEEEEEeccCCCcEeEEEEEEEEec
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999999886
No 3
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.8e-34 Score=214.16 Aligned_cols=83 Identities=36% Similarity=0.538 Sum_probs=79.8
Q ss_pred ccCccceEEEEEEeCCCCceEEEEEeeEEeecceeeEEeeeceEEEECC-CCCCCCCCEEEEeecCcCCcceeEEEEEEE
Q 041511 38 GPSQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDE-NNECNIGDRVRLDPSRPLSKHKHWLVAEIL 116 (147)
Q Consensus 38 ~~~~~k~l~G~VVS~km~KTvvV~V~r~~~hpkY~K~i~r~kK~~vHDp-~n~~kvGDiV~I~ecRPiSK~K~f~V~eIi 116 (147)
.+.++++|+|+|+|++|+|||+|+|+++++||+|+||++++++|+|||| .|+|++||+|+|+|||||||+|+|.|++|+
T Consensus 27 ~~vrgr~l~G~VvS~KM~KTivV~ve~~~~hpkY~K~~kr~kk~~aHDe~~n~~~vGD~V~I~E~RPlSKtKr~~vv~i~ 106 (113)
T 3j20_R 27 LKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINAKVGDKVLIAETRPLSKTKHFVVVAVL 106 (113)
T ss_dssp CCCCSCEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTSEEEEEECSCSSSSEEEEEEEEC
T ss_pred eeEeeEEEEEEEEeccCCceEEEEEEEEEEcCcccEEEECceEEEEECCCCCCCCCCCEEEEEecccCCCcEeEEEEEEE
Confidence 3668899999999999999999999999999999999999999999999 789999999999999999999999999999
Q ss_pred eccc
Q 041511 117 KKAR 120 (147)
Q Consensus 117 ~k~~ 120 (147)
+++.
T Consensus 107 ~~a~ 110 (113)
T 3j20_R 107 ERAE 110 (113)
T ss_dssp CCCC
T ss_pred eccc
Confidence 9875
No 4
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=100.00 E-value=2.2e-34 Score=213.10 Aligned_cols=81 Identities=41% Similarity=0.703 Sum_probs=78.2
Q ss_pred cceEEEEEEeCCCCceEEEEEeeEEeecceeeEEeeeceEEEECCCCCCCCCCEEEEeecCcCCcceeEEEEEEEecccc
Q 041511 42 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPSRPLSKHKHWLVAEILKKARI 121 (147)
Q Consensus 42 ~k~l~G~VVS~km~KTvvV~V~r~~~hpkY~K~i~r~kK~~vHDp~n~~kvGDiV~I~ecRPiSK~K~f~V~eIi~k~~~ 121 (147)
.++|+|+|+|++|+|||+|.|+++++||+|+||++++++|+||||+|+|++||+|+|+|||||||+|+|.|++|++++..
T Consensus 3 ~k~l~G~VvS~Km~KTivV~ver~~~hpkY~K~~kr~kk~~aHDe~n~~k~GD~V~I~E~RPlSKtKr~~vv~iv~~a~~ 82 (105)
T 2vqe_Q 3 KKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGRM 82 (105)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEEEEEECTTCCCCTTCEEEEEEEEEEETTEEEEEEEEEECCCH
T ss_pred ceEEEEEEEecCCCcEEEEEEEEEEEcCccceEEecceEEEEECCCCCCCCCCEEEEEEcccCCCCEEEEEEEEeecccc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred c
Q 041511 122 Y 122 (147)
Q Consensus 122 ~ 122 (147)
+
T Consensus 83 ~ 83 (105)
T 2vqe_Q 83 D 83 (105)
T ss_dssp H
T ss_pred c
Confidence 3
No 5
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=3.4e-34 Score=221.51 Aligned_cols=82 Identities=38% Similarity=0.583 Sum_probs=76.7
Q ss_pred cCcc-ceEEEEEEeCCCCceEEEEEeeEEeecceeeEEeeeceEEEECCCCCCCCCCEEEEeecCcCCcceeEEEEEEEe
Q 041511 39 PSQM-KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPSRPLSKHKHWLVAEILK 117 (147)
Q Consensus 39 ~~~~-k~l~G~VVS~km~KTvvV~V~r~~~hpkY~K~i~r~kK~~vHDp~n~~kvGDiV~I~ecRPiSK~K~f~V~eIi~ 117 (147)
+.++ ++|+|+|+|++|+|||+|+|+++++||+|+||+++++||+||||+|+|++||+|+|+|||||||+|+|+|++|++
T Consensus 56 svrg~k~l~G~VVS~KMdKTIvV~Ver~~~hpkY~K~vkr~kKy~AHDe~n~~kvGD~V~I~E~RPLSKtKrw~VveIve 135 (142)
T 3bbn_Q 56 VIRAMKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIA 135 (142)
T ss_dssp ----CCEEEEEEEECCSTTEEEEEEEEEEECSSSCSEEEEEEEEEEECTTCCCCTTEEEEEEECCCSSSSCCEEECCCSE
T ss_pred cccceEEEEEEEEEccCCceEEEEEEEEEEcCccccEEecceEEEEECCCCCCCCCCEEEEEEccCCCCcEEEEEEEEEe
Confidence 4555 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 041511 118 KAR 120 (147)
Q Consensus 118 k~~ 120 (147)
++.
T Consensus 136 ka~ 138 (142)
T 3bbn_Q 136 RAA 138 (142)
T ss_dssp EEC
T ss_pred ccc
Confidence 876
No 6
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=99.98 E-value=2.1e-32 Score=214.48 Aligned_cols=82 Identities=28% Similarity=0.390 Sum_probs=78.1
Q ss_pred ccCccceEEEEEEeCCCCceEEEEEeeEEeecceeeEEeeeceEEEECC-CCCCCCCCEEEEeecCcCCcceeEEEEEEE
Q 041511 38 GPSQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDE-NNECNIGDRVRLDPSRPLSKHKHWLVAEIL 116 (147)
Q Consensus 38 ~~~~~k~l~G~VVS~km~KTvvV~V~r~~~hpkY~K~i~r~kK~~vHDp-~n~~kvGDiV~I~ecRPiSK~K~f~V~eIi 116 (147)
.+.++++|+|+|+|++|+|||+|+|+++++||+|+|+++++++|+|||| .|+|++||+|+|+|||||||+|+|+|++|+
T Consensus 63 lsvRgr~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDee~n~~kvGD~V~I~EcRPLSKtKrw~Vv~I~ 142 (157)
T 2xzm_Q 63 LSIRGKIIKGLVISTKMNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCFSVKEGDILVAGQCRPISKTVRFNALQVV 142 (157)
T ss_dssp CCCCSCEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTCEEEEEECCCCSSSCCEEEEEEC
T ss_pred eeeeeEEEEEEEEEecCCccEEEEEEEEEecCccceEeecceeEEEECCCCCCCCCCCEEEEEEcCCCCCcEEEEEEEEE
Confidence 3668899999999999999999999999999999999999999999995 589999999999999999999999999999
Q ss_pred ecc
Q 041511 117 KKA 119 (147)
Q Consensus 117 ~k~ 119 (147)
+++
T Consensus 143 ~ka 145 (157)
T 2xzm_Q 143 PNE 145 (157)
T ss_dssp CCC
T ss_pred ecc
Confidence 774
No 7
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=99.97 E-value=3e-32 Score=213.42 Aligned_cols=82 Identities=30% Similarity=0.414 Sum_probs=78.5
Q ss_pred cCccceEEEEEEeCCCCceEEEEEeeEEeecceeeEEeeeceEEEECCC-CCCCCCCEEEEeecCcCCcceeEEEEEEEe
Q 041511 39 PSQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN-NECNIGDRVRLDPSRPLSKHKHWLVAEILK 117 (147)
Q Consensus 39 ~~~~k~l~G~VVS~km~KTvvV~V~r~~~hpkY~K~i~r~kK~~vHDp~-n~~kvGDiV~I~ecRPiSK~K~f~V~eIi~ 117 (147)
+.++++|+|+|+|++|+|||+|++++++|||+|+|+++++++|+||||+ |+|++||+|+|+|||||||+|+|+|++|++
T Consensus 65 svRgr~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~ 144 (156)
T 3u5c_L 65 SIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKVSA 144 (156)
T ss_dssp CEEEEEEEEEEEECCSTTEEEEEEEEEEEEGGGTEEEEEEEEEEEECCTTSCCCTTCEEEEEEEEEEETTEEEEEEEECC
T ss_pred eEeeEEEEEEEEeecCCCeEEEEEEEEeecCccceEEECceEEEEECCCcCcCCCCCEEEEEecccCCCcEeEEEEEEEe
Confidence 5688999999999999999999999999999999999999999999985 699999999999999999999999999999
Q ss_pred ccc
Q 041511 118 KAR 120 (147)
Q Consensus 118 k~~ 120 (147)
+++
T Consensus 145 ka~ 147 (156)
T 3u5c_L 145 AAG 147 (156)
T ss_dssp CCS
T ss_pred cCC
Confidence 863
No 8
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=99.97 E-value=5.7e-32 Score=212.20 Aligned_cols=82 Identities=32% Similarity=0.441 Sum_probs=71.9
Q ss_pred ccCccceEEEEEEeCCCCceEEEEEeeEEeecceeeEEeeeceEEEECCC-C-CCCCCCEEEEeecCcCCcceeEEEEEE
Q 041511 38 GPSQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN-N-ECNIGDRVRLDPSRPLSKHKHWLVAEI 115 (147)
Q Consensus 38 ~~~~~k~l~G~VVS~km~KTvvV~V~r~~~hpkY~K~i~r~kK~~vHDp~-n-~~kvGDiV~I~ecRPiSK~K~f~V~eI 115 (147)
.+.++++|+|+|+|++|+|||+|+++++++||+|+|+++++++|+||||+ | +|++||+|+|+|||||||+|+|+|++|
T Consensus 66 lsvRGr~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~~kvGD~V~I~E~RPLSKtKrw~Vv~I 145 (158)
T 2zkq_q 66 VSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKV 145 (158)
T ss_dssp -----CEEEEEEEECSSSCEEEEEEEEECSSTTCCCEEEEEEEECCBCCSSCCCC-CCCEEEEECCSCSSSCC-CEEEEE
T ss_pred cceeeEEEEEEEEEccCCccEEEEEEEEEecCccceeeecceeEEEECCcccCcCCCCCEEEEEEccccCCcEEEEEEEE
Confidence 36788999999999999999999999999999999999999999999987 4 799999999999999999999999999
Q ss_pred Eecc
Q 041511 116 LKKA 119 (147)
Q Consensus 116 i~k~ 119 (147)
++.+
T Consensus 146 ~~~~ 149 (158)
T 2zkq_q 146 TKAA 149 (158)
T ss_dssp EEC-
T ss_pred ecCC
Confidence 9754
No 9
>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=4.6e-32 Score=213.25 Aligned_cols=82 Identities=29% Similarity=0.402 Sum_probs=56.5
Q ss_pred ccCccceEEEEEEeCCCCceEEEEEeeEEeecceeeEEeeeceEEEECC-CCCCCCCCEEEEeecCcCCcceeEEEEEEE
Q 041511 38 GPSQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDE-NNECNIGDRVRLDPSRPLSKHKHWLVAEIL 116 (147)
Q Consensus 38 ~~~~~k~l~G~VVS~km~KTvvV~V~r~~~hpkY~K~i~r~kK~~vHDp-~n~~kvGDiV~I~ecRPiSK~K~f~V~eIi 116 (147)
.+.++++|+|+|+|++|+|||+|++++++|||+|+||++++++|+|||| .|+|++||+|+|+|||||||+|+|+|++|+
T Consensus 65 lsiRgril~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv 144 (161)
T 3iz6_P 65 VSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 144 (161)
T ss_dssp EEEEEEECTTTCCEEEEEEEEEEECTTCCCCSSCEEEEEECCCSSSSCCEEEEECCCCCC--------------------
T ss_pred eEEeeEEEEEEEEeccCCCeEEEEEEEEEecCccceEEECceeEEEECCCCCcCCCCCEEEEEeccCCCCcEeEEEEEEE
Confidence 4678999999999999999999999999999999999999999999998 479999999999999999999999999999
Q ss_pred ecc
Q 041511 117 KKA 119 (147)
Q Consensus 117 ~k~ 119 (147)
+++
T Consensus 145 ~~~ 147 (161)
T 3iz6_P 145 PAG 147 (161)
T ss_dssp ---
T ss_pred ecC
Confidence 886
No 10
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=47.78 E-value=14 Score=25.65 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=33.7
Q ss_pred EeeEEeecceeeEEeeeceEEEECCCCCCCCCCEEEEeecCcCCcceeEEEEEEEec
Q 041511 62 VDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPSRPLSKHKHWLVAEILKK 118 (147)
Q Consensus 62 V~r~~~hpkY~K~i~r~kK~~vHDp~n~~kvGDiV~I~ecRPiSK~K~f~V~eIi~k 118 (147)
.+-..+...|.....-+|++.+---....++||++.+.|...=.-+-+-...+|..-
T Consensus 10 H~lki~~~~F~~V~~G~Kt~EiR~nDr~~~vGD~l~l~E~~~g~yTGr~i~~~Vt~i 66 (83)
T 3iuw_A 10 HTLKIETEFFKAVKERRKTFEIRKNDRNFQVGDILILEEYMNGMYLDDECEAEVIYI 66 (83)
T ss_dssp EEEEEEHHHHHHHHTTSCCEEEEECCSCCCTTCEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EEEEcCHHHHHHHHcCCcEEEEEecccCCCCCCEEEEEEccCCCccCcEEEEEEEEE
Confidence 333344445555566667776665555699999999999842111233344455544
No 11
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=33.43 E-value=1.5e+02 Score=22.22 Aligned_cols=53 Identities=13% Similarity=0.015 Sum_probs=36.2
Q ss_pred ceEEEEEEeCCCCceEEEEEeeEEeecceeeEEeeeceEEEECCCC-----CCCCCCEEEEeecCcCCccee
Q 041511 43 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENN-----ECNIGDRVRLDPSRPLSKHKH 109 (147)
Q Consensus 43 k~l~G~VVS~km~KTvvV~V~r~~~hpkY~K~i~r~kK~~vHDp~n-----~~kvGDiV~I~ecRPiSK~K~ 109 (147)
.++.|+|+....+....|..+- -..++||-+.. -.+.||+|++.. +|...+|-
T Consensus 31 ge~~g~V~e~lgn~~f~V~l~n-------------G~~~La~I~GKmRk~IwI~~GD~VlVe~-~~yd~~KG 88 (143)
T 1d7q_A 31 GQEYAQVIKMLGNGRLEAMCFD-------------GVKRLCHIRGKLRKKVWINTSDIILVGL-RDYQDNKA 88 (143)
T ss_dssp TEEEEEEEEECSSSEEEEEETT-------------TEEEEEECCSGGGGSCCCCTTCEEEEEC-SSSSSSCC
T ss_pred CEEEEEEEEEcCCCEEEEEeCC-------------CCEEEEEecccceeeEEecCCCEEEEee-ccCCCCeE
Confidence 3579999988888888887531 12344444431 477899999885 67777774
No 12
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=30.07 E-value=1.5e+02 Score=20.95 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=35.9
Q ss_pred ceEEEEEEeCCCCceEEEEEeeEEeecceeeEEeeeceEEEECCCC-----CCCCCCEEEEeecCcCC-cce
Q 041511 43 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENN-----ECNIGDRVRLDPSRPLS-KHK 108 (147)
Q Consensus 43 k~l~G~VVS~km~KTvvV~V~r~~~hpkY~K~i~r~kK~~vHDp~n-----~~kvGDiV~I~ecRPiS-K~K 108 (147)
-+..|+|+....+....|..+- -..++||-+.. =.+.||.|++. ..|.. .+|
T Consensus 20 ~e~~g~V~~~lgn~~~~V~l~n-------------G~~~la~i~GKmRk~IwI~~GD~VlVe-~~~yd~~~K 77 (102)
T 1jt8_A 20 NEILGIIEQMLGASRVRVRCLD-------------GKTRLGRIPGRLKNRIWVREGDVVIVK-PWEVQGDQK 77 (102)
T ss_dssp CCEEEEEECSSCSSEEEEEEET-------------TEEEEEECCHHHHHHHCCCSCEEEEEC-CBCCTTSEE
T ss_pred CEEEEEEEEEcCCCEEEEEECC-------------CCEEEEEEcccceeeEEecCCCEEEEE-eccCCCCce
Confidence 3579999998888888887641 23455555542 47889999887 44655 555
No 13
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=29.66 E-value=66 Score=24.17 Aligned_cols=60 Identities=10% Similarity=0.004 Sum_probs=34.6
Q ss_pred cCccceEEEEEEeCCCCceEEEEEeeE-----EeecceeeEEeeec--eEEEECCCCCCCCCCEEEEee
Q 041511 39 PSQMKSVVGLVVSNKMQKSVVVAVDRL-----FHHKVYNRYVKRTS--KFMAHDENNECNIGDRVRLDP 100 (147)
Q Consensus 39 ~~~~k~l~G~VVS~km~KTvvV~V~r~-----~~hpkY~K~i~r~k--K~~vHDp~n~~kvGDiV~I~e 100 (147)
+. +....|+|++-. ++-+.|.+.-. .....|.-+++... .-.+-+..+.+++||+|..+=
T Consensus 56 p~-GdiV~G~V~~V~-~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akV 122 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLR-NSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARV 122 (179)
T ss_dssp CT-TCEEEEEEEEEC-SSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEE
T ss_pred CC-CCEEEEEEEEEe-CCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEE
Confidence 67 999999999754 56677877542 00002222332211 001235557899999996543
No 14
>1g31_A GP31; chaperone, CO-chaperonin, groes, in VIVO protein folding, bacteriophage T4; 2.30A {Enterobacteria phage T4} SCOP: b.35.1.1 PDB: 2cgt_O
Probab=28.83 E-value=73 Score=23.03 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=12.2
Q ss_pred CCCCCCCCCEEEEee
Q 041511 86 ENNECNIGDRVRLDP 100 (147)
Q Consensus 86 p~n~~kvGDiV~I~e 100 (147)
+...+++||.|++..
T Consensus 59 ~~~~vKvGD~Vl~~k 73 (111)
T 1g31_A 59 PEGFCEVGDLTSLPV 73 (111)
T ss_dssp CTTSCCTTCEEEEEG
T ss_pred ccccccCCCEEEECC
Confidence 445799999999966
No 15
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=28.34 E-value=17 Score=27.80 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=29.5
Q ss_pred cCccceEEEEEEeCCCC--ceEEEEEeeEEeecceeeEEeeeceEEEECCC-CCCCCCCEEEE
Q 041511 39 PSQMKSVVGLVVSNKMQ--KSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN-NECNIGDRVRL 98 (147)
Q Consensus 39 ~~~~k~l~G~VVS~km~--KTvvV~V~r~~~hpkY~K~i~r~kK~~vHDp~-n~~kvGDiV~I 98 (147)
+..+....|+|.++... -++.+. |- ....+-+.+..|+.. +++..||.|.|
T Consensus 16 ~g~G~v~~G~v~~G~i~~Gd~v~i~-------P~--~~~~~V~~I~~~~~~~~~A~aGd~V~l 69 (204)
T 3e1y_E 16 KDMGTVVLGKLESGSICKGQQLVMM-------PN--KHNVEVLGILSDDVETDTVAPGENLKI 69 (204)
T ss_dssp ESSSEEEEEECCBSCEESSCCEEET-------TT--TEEEEEEEECSSSSCBSEECTTSEEEE
T ss_pred cCCCEEEEEEEecCEEECCCEEEEC-------CC--CCEEEEEEEEECCEEeEEECCCCEEEE
Confidence 34677888998886432 223221 21 123455566666665 57777887766
No 16
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=28.31 E-value=73 Score=23.12 Aligned_cols=43 Identities=7% Similarity=0.051 Sum_probs=32.7
Q ss_pred ceEEEECCC---CCCCCCCEEEEeecCcCCcceeEEEEEEEecccc
Q 041511 79 SKFMAHDEN---NECNIGDRVRLDPSRPLSKHKHWLVAEILKKARI 121 (147)
Q Consensus 79 kK~~vHDp~---n~~kvGDiV~I~ecRPiSK~K~f~V~eIi~k~~~ 121 (147)
..++|.-.. ..++.||+|...-..|...-|.|.|.+|..=++.
T Consensus 77 ~DiyVs~~~irrf~lr~GD~V~g~vr~~~~~ek~~~l~~v~~vng~ 122 (130)
T 1a62_A 77 DDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFD 122 (130)
T ss_dssp TCEEECHHHHHHTTCCTTCEEEEEEECCCTTCCSEEEEEEEEETTB
T ss_pred CCEEECHHHHhHhCCCCCCEEEEEEeCCCCCCcccceeEEEeECCC
Confidence 455555332 2799999999988888888999999999765554
No 17
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=27.63 E-value=74 Score=21.55 Aligned_cols=59 Identities=14% Similarity=0.053 Sum_probs=31.3
Q ss_pred cceEEEEEEeCCCCceEEEEEeeEEeecceeeEEeeeceEEEECCCCCCCCCCEEEEeecCcCCcce
Q 041511 42 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPSRPLSKHK 108 (147)
Q Consensus 42 ~k~l~G~VVS~km~KTvvV~V~r~~~hpkY~K~i~r~kK~~vHDp~n~~kvGDiV~I~ecRPiSK~K 108 (147)
.-++.|+|+....+....|..+-- ..+..+++-+-+. -.--..+||.|.+. ..|..-+|
T Consensus 13 ~ie~~G~Vik~l~n~~f~V~l~nG---~~~~c~i~GK~Rk----~~I~Il~GD~V~ve-~~~yd~~k 71 (79)
T 3i4o_A 13 AIEVEGRVVEPLPNAMFRIELENG---HKVLAHISGKMRQ----HYIRILPEDRVVVE-LSPYDLSR 71 (79)
T ss_dssp CSEEEEEEEEEETTTEEEEEETTS---CEEEEEECHHHHH----TTCCCCTTCEEEEE-EETTEEEE
T ss_pred eEEEEEEEEEEcCCCEEEEEeCCC---CEEEEEeCcceec----CCccCCCCCEEEEE-ECccCCCc
Confidence 346899999876566677766521 0122222211100 01137889999885 44544444
No 18
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=26.72 E-value=32 Score=23.96 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=12.6
Q ss_pred CCCCCCCCCCEEEEeec
Q 041511 85 DENNECNIGDRVRLDPS 101 (147)
Q Consensus 85 Dp~n~~kvGDiV~I~ec 101 (147)
|+..++++||+|+|--.
T Consensus 37 ~~~~~~~vGD~VLVH~G 53 (90)
T 2ot2_A 37 DENGQPRVGQWVLVHVG 53 (90)
T ss_dssp CTTSCBCTTCEEEEETT
T ss_pred CCCCCCCCCCEEEEecC
Confidence 44446899999999654
No 19
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=24.94 E-value=69 Score=21.14 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=23.9
Q ss_pred CCCCCCCCEEEEeecCcCCcceeEEEEEEEecccc
Q 041511 87 NNECNIGDRVRLDPSRPLSKHKHWLVAEILKKARI 121 (147)
Q Consensus 87 ~n~~kvGDiV~I~ecRPiSK~K~f~V~eIi~k~~~ 121 (147)
.|...+||.|.|. .|--....|.|.++....+.
T Consensus 27 rN~f~~GD~iEi~--~P~g~~~~~~v~~m~d~~G~ 59 (89)
T 4he6_A 27 RNHFRPGDEVEFF--GPEIENFTQVIEKIWDEDGN 59 (89)
T ss_dssp SSCBCTTCEEEEE--STTSCCEEEECCCEEETTSC
T ss_pred cCCcCCCCEEEEE--cCCCCcEEEEeHHeEcCCCC
Confidence 4678899999876 46555677888888755444
No 20
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.07 E-value=2.1e+02 Score=20.38 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=36.3
Q ss_pred eEEEEEEeCCCCceEEEEEeeEEeecceeeEEeeeceEEEECCCC-----CCCCCCEEEEeecCcCC-cce
Q 041511 44 SVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENN-----ECNIGDRVRLDPSRPLS-KHK 108 (147)
Q Consensus 44 ~l~G~VVS~km~KTvvV~V~r~~~hpkY~K~i~r~kK~~vHDp~n-----~~kvGDiV~I~ecRPiS-K~K 108 (147)
+..|+|+....+....|..+- -..++||-+.. -.+.||+|++.. .|.. +.|
T Consensus 16 e~~g~V~~~lgn~~f~V~l~n-------------G~~~la~i~GK~Rk~IwI~~GD~VlVe~-~~yd~~~k 72 (111)
T 2dgy_A 16 QQIVRVLRTPGNNLHEVETAQ-------------GQRFLVSMPSKYRKNIWIKRGDFLIVDP-IEEGEKVK 72 (111)
T ss_dssp CEEEEEEECCSSSEEEEECTT-------------SCEEEEECCTTCCSCCCCCSSCEEEEEE-CSSCSSCC
T ss_pred eEEEEEEEeCCCCEEEEEeCC-------------CCEEEEEechhhcccEEEcCCCEEEEEe-cccCCcce
Confidence 579999998888888887542 24566666653 477899999874 5666 443
No 21
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=20.95 E-value=54 Score=25.84 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=17.6
Q ss_pred eeceEEEECCC-CCCCCCCEEEEeec
Q 041511 77 RTSKFMAHDEN-NECNIGDRVRLDPS 101 (147)
Q Consensus 77 r~kK~~vHDp~-n~~kvGDiV~I~ec 101 (147)
|+-.+.+.|.- +.|+.||.|.|...
T Consensus 211 rsi~v~l~~dLvd~~~PGDrV~vtGI 236 (268)
T 2vl6_A 211 RQLEIILEDDLVDSARPGDRVKVTGI 236 (268)
T ss_dssp CEEEEEEEGGGTTSSCTTCEEEEEEE
T ss_pred cEEEEEEccCccCcccCCCEEEEEEE
Confidence 44555565655 58999999997654
No 22
>3u5c_c S33, YS27, 40S ribosomal protein S28-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Y 3o30_R 3o2z_R 3u5g_c 3iz6_Y
Probab=20.44 E-value=82 Score=21.11 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=16.2
Q ss_pred EEEECCCCCCCCCCEEEEeecC
Q 041511 81 FMAHDENNECNIGDRVRLDPSR 102 (147)
Q Consensus 81 ~~vHDp~n~~kvGDiV~I~ecR 102 (147)
+....=.--+++||++.+.||.
T Consensus 39 ~i~RnVkGPVR~GDIl~L~EtE 60 (67)
T 3u5c_c 39 TIVRNVKGPVRENDILVLMESE 60 (67)
T ss_dssp EEEEECSSCCCTTCEEEESSSS
T ss_pred EEEecccCCcccCCEEEEehhh
Confidence 3333444569999999999984
No 23
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=20.26 E-value=62 Score=19.05 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=14.5
Q ss_pred EEEECCCC-CCCCCCEEEEeec
Q 041511 81 FMAHDENN-ECNIGDRVRLDPS 101 (147)
Q Consensus 81 ~~vHDp~n-~~kvGDiV~I~ec 101 (147)
|.+.++.. ..+.||+|.|.+.
T Consensus 11 y~~~~~~eLs~~~Gd~i~v~~~ 32 (60)
T 2v1q_A 11 FMAESQDELTIKSGDKVYILDD 32 (60)
T ss_dssp BCCCSTTBCCBCTTCEEEEEES
T ss_pred ECCCCCCCccCCCCCEEEEEeC
Confidence 33444443 7899999999873
Done!